Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
TTLL10	254173	broad.mit.edu	37	1	1115497	1115497	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:1115497G>A	uc001acy.2	+	6	434	c.283G>A	c.(283-285)GGA>AGA	p.G95R	uc001acx.1_5'Flank|TTLL10_uc010nyg.1_Missense_Mutation_p.G95R|TTLL10_uc001acz.1_Missense_Mutation_p.G22R	NM_001130045	NP_001123517	Q6ZVT0	TTL10_HUMAN	tubulin tyrosine ligase-like family, member 10	95					protein modification process		ATP binding|tubulin-tyrosine ligase activity			large_intestine(1)	1	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;9.48e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Lung SC(97;0.217)		Epithelial(90;4.75e-36)|OV - Ovarian serous cystadenocarcinoma(86;5.82e-22)|Colorectal(212;3.94e-05)|COAD - Colon adenocarcinoma(227;4.22e-05)|Kidney(185;0.00227)|BRCA - Breast invasive adenocarcinoma(365;0.00461)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.199)		CGACGCAGATGGACACTGTGG	0.687													5	19					0	0	0.001168	0	0
TNFRSF18	8784	broad.mit.edu	37	1	1140754	1140754	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:1140754G>A	uc001adc.2	-	2	444	c.306C>T	c.(304-306)TCC>TCT	p.S102S	TNFRSF18_uc001ada.2_Silent_p.S30S|TNFRSF18_uc001adb.2_Silent_p.S102S|TNFRSF18_uc001add.2_Silent_p.S102S	NM_004195	NP_004186	Q9Y5U5	TNR18_HUMAN	tumor necrosis factor receptor superfamily,	102	TNFR-Cys 2.|Extracellular (Potential).				anti-apoptosis|apoptosis	extracellular region|integral to plasma membrane	tumor necrosis factor receptor activity				0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		Epithelial(90;3.73e-36)|OV - Ovarian serous cystadenocarcinoma(86;1.01e-21)|Colorectal(212;3.94e-05)|COAD - Colon adenocarcinoma(227;4.22e-05)|Kidney(185;0.00227)|BRCA - Breast invasive adenocarcinoma(365;0.0025)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.199)		ACTTACCCTGGGACTGTACCC	0.652													10	7					0	0	0.006214	0	0
GABRD	2563	broad.mit.edu	37	1	1956779	1956779	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:1956779C>T	uc001aip.2	+	3	283	c.188C>T	c.(187-189)CCC>CTC	p.P63L		NM_000815	NP_000806	O14764	GBRD_HUMAN	gamma-aminobutyric acid (GABA) A receptor, delta	63	Extracellular (Probable).					cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3	all_cancers(77;0.000708)|all_epithelial(69;0.000943)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;2.7e-19)|all_lung(118;1.22e-08)|Lung NSC(185;1.24e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Medulloblastoma(700;0.123)|Lung SC(97;0.128)		Epithelial(90;2.19e-38)|OV - Ovarian serous cystadenocarcinoma(86;3.17e-24)|GBM - Glioblastoma multiforme(42;9.56e-08)|Colorectal(212;4.12e-05)|COAD - Colon adenocarcinoma(227;0.000194)|Kidney(185;0.00231)|BRCA - Breast invasive adenocarcinoma(365;0.00441)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0344)|Lung(427;0.2)		GCAGGCCCCCCCGTGAATGTG	0.652													24	91					0	0	0.007291	0	0
PEX10	5192	broad.mit.edu	37	1	2340004	2340004	+	Missense_Mutation	SNP	C	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:2340004C>G	uc001ajh.2	-	3	556	c.487G>C	c.(487-489)GCG>CCG	p.A163P	PEX10_uc001ajg.2_Missense_Mutation_p.A163P	NM_002617	NP_002608	O60683	PEX10_HUMAN	peroxisome biogenesis factor 10 isoform 2	163					protein import into peroxisome matrix|protein import into peroxisome matrix	integral to peroxisomal membrane|peroxisomal membrane	protein binding|protein C-terminus binding|zinc ion binding|zinc ion binding			central_nervous_system(1)	1	all_cancers(77;0.000247)|all_epithelial(69;9.96e-05)|all_lung(157;0.016)|Lung NSC(156;0.0376)|Ovarian(185;0.0634)	all_epithelial(116;5.35e-20)|all_lung(118;2.78e-08)|Lung NSC(185;2.69e-06)|Breast(487;0.00147)|Renal(390;0.00183)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Medulloblastoma(700;0.123)|Lung SC(97;0.128)		Epithelial(90;1.1e-37)|OV - Ovarian serous cystadenocarcinoma(86;6.02e-23)|GBM - Glioblastoma multiforme(42;9e-08)|Colorectal(212;3.94e-05)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00102)|BRCA - Breast invasive adenocarcinoma(365;0.00435)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0169)|Lung(427;0.199)		ACGAAGACCGCCCGCAGCAGC	0.672													5	41					0	0	0.000602	0	0
PLCH2	9651	broad.mit.edu	37	1	2421228	2421228	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:2421228G>A	uc001aji.1	+	10	1711	c.1437G>A	c.(1435-1437)GAG>GAA	p.E479E	PLCH2_uc010nyz.1_Silent_p.E267E|PLCH2_uc009vle.1_Silent_p.E267E|PLCH2_uc001ajj.1_Silent_p.E267E|PLCH2_uc001ajk.1_Silent_p.E267E	NM_014638	NP_055453	O75038	PLCH2_HUMAN	phospholipase C, eta 2	479					intracellular signal transduction|lipid catabolic process	cytoplasm|plasma membrane	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			central_nervous_system(3)|ovary(1)|skin(1)	5	all_cancers(77;0.000161)|all_epithelial(69;5.98e-05)|all_lung(157;0.016)|Lung NSC(156;0.0376)|Ovarian(185;0.0634)	all_epithelial(116;7.32e-16)|all_lung(118;1.15e-06)|Lung NSC(185;6.26e-05)|Renal(390;0.00571)|Breast(487;0.00832)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Medulloblastoma(700;0.151)|Lung SC(97;0.217)		Epithelial(90;1.44e-37)|OV - Ovarian serous cystadenocarcinoma(86;6.78e-23)|GBM - Glioblastoma multiforme(42;2.8e-08)|Colorectal(212;4.19e-05)|COAD - Colon adenocarcinoma(227;0.000195)|Kidney(185;0.00034)|BRCA - Breast invasive adenocarcinoma(365;0.00443)|KIRC - Kidney renal clear cell carcinoma(229;0.00548)|STAD - Stomach adenocarcinoma(132;0.00644)|Lung(427;0.2)		ACATCAGCGAGGATGCGGAGG	0.592													29	53					0	0	0.003271	0	0
MMEL1	79258	broad.mit.edu	37	1	2523021	2523021	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:2523021C>T	uc001ajy.2	-	23	2429	c.2215G>A	c.(2215-2217)GAC>AAC	p.D739N	MMEL1_uc009vlg.1_RNA	NM_033467	NP_258428	Q495T6	MMEL1_HUMAN	membrane metallo-endopeptidase-like 1	739	Lumenal (Potential).				proteolysis	extracellular region|integral to membrane|intracellular membrane-bounded organelle	metal ion binding|metalloendopeptidase activity				0	all_cancers(77;0.000233)|all_epithelial(69;8.55e-05)|all_lung(157;0.0228)|Lung NSC(156;0.0402)|Ovarian(185;0.0634)	all_epithelial(116;1.03e-20)|all_lung(118;5.15e-09)|Lung NSC(185;9.02e-07)|Breast(487;0.00147)|Renal(390;0.00183)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.0847)|Medulloblastoma(700;0.123)		Epithelial(90;4.31e-38)|OV - Ovarian serous cystadenocarcinoma(86;8.52e-23)|GBM - Glioblastoma multiforme(42;1.49e-08)|Colorectal(212;4.79e-05)|COAD - Colon adenocarcinoma(227;0.000213)|Kidney(185;0.000371)|BRCA - Breast invasive adenocarcinoma(365;0.00219)|KIRC - Kidney renal clear cell carcinoma(229;0.00571)|STAD - Stomach adenocarcinoma(132;0.00645)|Lung(427;0.131)		CTGTGGACGTCTGTCTTGATG	0.617													46	107					0	0	0.014410	0	0
ACTRT2	140625	broad.mit.edu	37	1	2938890	2938890	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:2938890G>A	uc001ajz.2	+	1	845	c.640G>A	c.(640-642)GAC>AAC	p.D214N		NM_080431	NP_536356	Q8TDY3	ACTT2_HUMAN	actin-related protein M2	214						cytoplasm|cytoskeleton					0	all_cancers(77;0.00205)|all_epithelial(69;0.0011)|Ovarian(185;0.0634)|Lung NSC(156;0.0893)|all_lung(157;0.0909)	all_epithelial(116;2.66e-20)|all_lung(118;1.56e-08)|Lung NSC(185;2.54e-06)|Breast(487;0.00156)|Renal(390;0.00183)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0308)|Lung SC(97;0.0847)|Medulloblastoma(700;0.123)		Epithelial(90;7.19e-38)|OV - Ovarian serous cystadenocarcinoma(86;5.15e-22)|GBM - Glioblastoma multiforme(42;1.1e-12)|Colorectal(212;3.98e-05)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.000329)|BRCA - Breast invasive adenocarcinoma(365;0.000949)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(132;0.00644)|Lung(427;0.125)		GGGTCTCGTGGACGACATCAA	0.642													21	54					0	0	0.014323	0	0
PRDM16	63976	broad.mit.edu	37	1	3102925	3102925	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:3102925C>T	uc001akf.2	+	2	354	c.274C>T	c.(274-276)CCA>TCA	p.P92S	PRDM16_uc001akc.2_Missense_Mutation_p.P92S|PRDM16_uc001akd.2_Missense_Mutation_p.P92S|PRDM16_uc001ake.2_Missense_Mutation_p.P92S|PRDM16_uc009vlh.2_5'UTR	NM_022114	NP_071397	Q9HAZ2	PRD16_HUMAN	PR domain containing 16 isoform 1	92	SET.				brown fat cell differentiation|negative regulation of granulocyte differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of cellular respiration|transcription, DNA-dependent	transcriptional repressor complex	protein binding|sequence-specific DNA binding|transcription coactivator activity|zinc ion binding			lung(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7	all_cancers(77;0.00208)|all_epithelial(69;0.000732)|Ovarian(185;0.0634)|Lung NSC(156;0.109)|all_lung(157;0.111)	all_epithelial(116;2.03e-21)|all_lung(118;7.55e-09)|Lung NSC(185;1.28e-06)|Breast(487;0.000792)|Renal(390;0.00137)|Hepatocellular(190;0.00515)|Myeloproliferative disorder(586;0.0267)|Ovarian(437;0.0365)|Lung SC(97;0.114)|Medulloblastoma(700;0.134)		Epithelial(90;5.59e-35)|OV - Ovarian serous cystadenocarcinoma(86;1.99e-20)|GBM - Glioblastoma multiforme(42;3.72e-11)|Colorectal(212;0.000425)|BRCA - Breast invasive adenocarcinoma(365;0.000946)|COAD - Colon adenocarcinoma(227;0.000968)|Kidney(185;0.00155)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0175)|Lung(427;0.137)		GTCCTCCATCCCAGGGGCTGG	0.662			T	EVI1	MDS|AML								20	49					0	0	0.012319	0	0
PRDM16	63976	broad.mit.edu	37	1	3347451	3347451	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:3347451C>T	uc001akf.2	+	15	3380	c.3300C>T	c.(3298-3300)ATC>ATT	p.I1100I	PRDM16_uc001akc.2_Silent_p.I1099I|PRDM16_uc001akd.2_Silent_p.I1099I|PRDM16_uc001ake.2_Silent_p.I1100I|PRDM16_uc009vlh.2_Silent_p.I800I	NM_022114	NP_071397	Q9HAZ2	PRD16_HUMAN	PR domain containing 16 isoform 1	1100	Mediates interaction with SKI and regulation of TGF-beta signaling.				brown fat cell differentiation|negative regulation of granulocyte differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of cellular respiration|transcription, DNA-dependent	transcriptional repressor complex	protein binding|sequence-specific DNA binding|transcription coactivator activity|zinc ion binding			lung(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7	all_cancers(77;0.00208)|all_epithelial(69;0.000732)|Ovarian(185;0.0634)|Lung NSC(156;0.109)|all_lung(157;0.111)	all_epithelial(116;2.03e-21)|all_lung(118;7.55e-09)|Lung NSC(185;1.28e-06)|Breast(487;0.000792)|Renal(390;0.00137)|Hepatocellular(190;0.00515)|Myeloproliferative disorder(586;0.0267)|Ovarian(437;0.0365)|Lung SC(97;0.114)|Medulloblastoma(700;0.134)		Epithelial(90;5.59e-35)|OV - Ovarian serous cystadenocarcinoma(86;1.99e-20)|GBM - Glioblastoma multiforme(42;3.72e-11)|Colorectal(212;0.000425)|BRCA - Breast invasive adenocarcinoma(365;0.000946)|COAD - Colon adenocarcinoma(227;0.000968)|Kidney(185;0.00155)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0175)|Lung(427;0.137)		ACATGCAGATCGTGGACGGCA	0.423			T	EVI1	MDS|AML								16	36					0	0	0.008871	0	0
ARHGEF16	27237	broad.mit.edu	37	1	3395096	3395096	+	Silent	SNP	C	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:3395096C>A	uc001akg.3	+	12	1982	c.1734C>A	c.(1732-1734)TCC>TCA	p.S578S	ARHGEF16_uc001aki.2_Silent_p.S290S|ARHGEF16_uc001akj.2_Silent_p.S290S|ARHGEF16_uc010nzh.1_Silent_p.S282S	NM_014448	NP_055263	Q5VV41	ARHGG_HUMAN	Rho guanine exchange factor 16	578	PH.				activation of Cdc42 GTPase activity|activation of Rac GTPase activity|apoptosis|cell chemotaxis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|positive regulation of establishment of protein localization in plasma membrane|small GTPase mediated signal transduction	cytosol	PDZ domain binding|receptor tyrosine kinase binding|Rho GTPase binding|Rho guanyl-nucleotide exchange factor activity			ovary(1)	1	all_cancers(77;0.00276)|all_epithelial(69;0.00102)|Ovarian(185;0.0634)|Lung NSC(156;0.0969)|all_lung(157;0.101)	all_epithelial(116;7.14e-21)|all_lung(118;2.24e-08)|Lung NSC(185;3.55e-06)|Breast(487;0.000765)|Renal(390;0.00121)|Hepatocellular(190;0.0046)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0308)|Lung SC(97;0.0847)|Medulloblastoma(700;0.211)		Epithelial(90;8.62e-38)|OV - Ovarian serous cystadenocarcinoma(86;3.62e-22)|GBM - Glioblastoma multiforme(42;2.49e-12)|Colorectal(212;4.25e-05)|COAD - Colon adenocarcinoma(227;0.000196)|Kidney(185;0.000342)|BRCA - Breast invasive adenocarcinoma(365;0.000681)|KIRC - Kidney renal clear cell carcinoma(229;0.00549)|STAD - Stomach adenocarcinoma(132;0.00644)|Lung(427;0.201)		GTAGCTCCTCCGTGCCCCACC	0.662													27	43					7.26314e-15	7.83895e-15	0.007291	1	0
MEGF6	1953	broad.mit.edu	37	1	3409227	3409227	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:3409227A>G	uc001akl.2	-	35	4719	c.4492T>C	c.(4492-4494)TAC>CAC	p.Y1498H	MEGF6_uc001akk.2_Missense_Mutation_p.Y1186H	NM_001409	NP_001400	O75095	MEGF6_HUMAN	EGF-like-domain, multiple 3 precursor	1498	EGF-like 27.					extracellular region	calcium ion binding			large_intestine(1)	1	all_cancers(77;0.00681)|all_epithelial(69;0.00301)|Ovarian(185;0.0634)|Lung NSC(156;0.0969)|all_lung(157;0.105)	all_epithelial(116;7.41e-22)|all_lung(118;8.3e-09)|Lung NSC(185;3.55e-06)|Breast(487;0.000659)|Renal(390;0.00121)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Lung SC(97;0.0262)|Ovarian(437;0.0308)|Medulloblastoma(700;0.211)		Epithelial(90;3.78e-37)|OV - Ovarian serous cystadenocarcinoma(86;6.86e-22)|GBM - Glioblastoma multiforme(42;1.96e-12)|Colorectal(212;6.15e-05)|COAD - Colon adenocarcinoma(227;0.000241)|Kidney(185;0.000448)|BRCA - Breast invasive adenocarcinoma(365;0.000779)|KIRC - Kidney renal clear cell carcinoma(229;0.00645)|STAD - Stomach adenocarcinoma(132;0.00669)|Lung(427;0.213)		GGCCCCATGTAGCCATCCACA	0.662													3	53					0	0	0.009096	0	0
CCDC27	148870	broad.mit.edu	37	1	3673449	3673449	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:3673449G>A	uc001akv.2	+	4	787	c.706G>A	c.(706-708)GAG>AAG	p.E236K		NM_152492	NP_689705	Q2M243	CCD27_HUMAN	coiled-coil domain containing 27	236										skin(1)	1	all_cancers(77;0.0385)|Ovarian(185;0.0634)|Lung NSC(156;0.21)|all_lung(157;0.218)	all_epithelial(116;5.52e-17)|all_lung(118;1.04e-06)|Lung NSC(185;0.000214)|Renal(390;0.00357)|Breast(487;0.00446)|Hepatocellular(190;0.0218)|Lung SC(97;0.0367)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.127)		Epithelial(90;1.11e-38)|OV - Ovarian serous cystadenocarcinoma(86;1.35e-22)|GBM - Glioblastoma multiforme(42;3.46e-16)|Colorectal(212;1.17e-05)|COAD - Colon adenocarcinoma(227;5.76e-05)|Kidney(185;0.00036)|BRCA - Breast invasive adenocarcinoma(365;0.000696)|KIRC - Kidney renal clear cell carcinoma(229;0.00558)|STAD - Stomach adenocarcinoma(132;0.00645)|Lung(427;0.203)		AGTCATCCACGAGAAGGTACT	0.612													12	15					0	0	0.013537	0	0
NPHP4	261734	broad.mit.edu	37	1	5923956	5923956	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:5923956G>A	uc001alq.1	-	29	4400	c.4134C>T	c.(4132-4134)TCC>TCT	p.S1378S	NPHP4_uc001alr.1_3'UTR	NM_015102	NP_055917	O75161	NPHP4_HUMAN	nephroretinin	1378					actin cytoskeleton organization|cell-cell adhesion|signal transduction|visual behavior	cell-cell junction|centrosome|cilium|microtubule basal body	protein binding|structural molecule activity			pancreas(1)	1	Ovarian(185;0.0634)	all_cancers(23;7.53e-41)|all_epithelial(116;3.96e-23)|all_lung(118;5.12e-09)|all_hematologic(16;5.45e-07)|Lung NSC(185;5.49e-07)|all_neural(13;3.21e-06)|Acute lymphoblastic leukemia(12;3.44e-05)|Breast(487;0.000601)|Renal(390;0.0007)|Colorectal(325;0.00113)|Hepatocellular(190;0.00213)|Glioma(11;0.00223)|Myeloproliferative disorder(586;0.0256)|Ovarian(437;0.04)|Lung SC(97;0.128)|Medulloblastoma(700;0.213)		Epithelial(90;1.69e-36)|GBM - Glioblastoma multiforme(13;5.07e-29)|OV - Ovarian serous cystadenocarcinoma(86;1.05e-19)|Colorectal(212;4.54e-07)|COAD - Colon adenocarcinoma(227;3.14e-05)|Kidney(185;0.00012)|BRCA - Breast invasive adenocarcinoma(365;0.00102)|KIRC - Kidney renal clear cell carcinoma(229;0.00179)|STAD - Stomach adenocarcinoma(132;0.00472)|READ - Rectum adenocarcinoma(331;0.0649)		ACACCTGGAAGGAGTCCTCTC	0.602													12	41					0	0	0.010729	0	0
NPHP4	261734	broad.mit.edu	37	1	5923958	5923958	+	Missense_Mutation	SNP	A	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:5923958A>T	uc001alq.1	-	29	4398	c.4132T>A	c.(4132-4134)TCC>ACC	p.S1378T	NPHP4_uc001alr.1_3'UTR	NM_015102	NP_055917	O75161	NPHP4_HUMAN	nephroretinin	1378					actin cytoskeleton organization|cell-cell adhesion|signal transduction|visual behavior	cell-cell junction|centrosome|cilium|microtubule basal body	protein binding|structural molecule activity			pancreas(1)	1	Ovarian(185;0.0634)	all_cancers(23;7.53e-41)|all_epithelial(116;3.96e-23)|all_lung(118;5.12e-09)|all_hematologic(16;5.45e-07)|Lung NSC(185;5.49e-07)|all_neural(13;3.21e-06)|Acute lymphoblastic leukemia(12;3.44e-05)|Breast(487;0.000601)|Renal(390;0.0007)|Colorectal(325;0.00113)|Hepatocellular(190;0.00213)|Glioma(11;0.00223)|Myeloproliferative disorder(586;0.0256)|Ovarian(437;0.04)|Lung SC(97;0.128)|Medulloblastoma(700;0.213)		Epithelial(90;1.69e-36)|GBM - Glioblastoma multiforme(13;5.07e-29)|OV - Ovarian serous cystadenocarcinoma(86;1.05e-19)|Colorectal(212;4.54e-07)|COAD - Colon adenocarcinoma(227;3.14e-05)|Kidney(185;0.00012)|BRCA - Breast invasive adenocarcinoma(365;0.00102)|KIRC - Kidney renal clear cell carcinoma(229;0.00179)|STAD - Stomach adenocarcinoma(132;0.00472)|READ - Rectum adenocarcinoma(331;0.0649)		ACCTGGAAGGAGTCCTCTCTG	0.607													12	41					0	0	0.010729	0	0
CHD5	26038	broad.mit.edu	37	1	6184100	6184100	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:6184100C>T	uc001amb.1	-	31	4707	c.4607G>A	c.(4606-4608)GGG>GAG	p.G1536E	CHD5_uc001alz.1_Missense_Mutation_p.G393E|CHD5_uc001ama.1_RNA|CHD5_uc001amc.1_RNA|CHD5_uc009vlx.1_RNA	NM_015557	NP_056372	Q8TDI0	CHD5_HUMAN	chromodomain helicase DNA binding protein 5	1536					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|DNA binding|zinc ion binding			central_nervous_system(3)|breast(3)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)|skin(1)|pancreas(1)	12	Ovarian(185;0.0634)	all_cancers(23;5.36e-32)|all_epithelial(116;2.32e-17)|all_neural(13;3.68e-06)|all_lung(118;3.94e-06)|all_hematologic(16;2.39e-05)|Lung NSC(185;5.33e-05)|Acute lymphoblastic leukemia(12;0.000372)|Glioma(11;0.00127)|Renal(390;0.00188)|Colorectal(325;0.00342)|Breast(487;0.00373)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.15)		Epithelial(90;3.08e-37)|GBM - Glioblastoma multiforme(13;1.36e-31)|OV - Ovarian serous cystadenocarcinoma(86;7.7e-19)|Colorectal(212;9.97e-08)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(185;6.16e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.00109)|BRCA - Breast invasive adenocarcinoma(365;0.0012)|STAD - Stomach adenocarcinoma(132;0.00346)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.193)		CGACTTCTTCCCCTCGGGCCC	0.552													12	22					0	0	0.001855	0	0
CHD5	26038	broad.mit.edu	37	1	6191793	6191793	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:6191793C>T	uc001amb.1	-	21	3260	c.3160G>A	c.(3160-3162)GAC>AAC	p.D1054N	CHD5_uc001alz.1_5'UTR|CHD5_uc001ama.1_RNA|CHD5_uc001amc.1_RNA|CHD5_uc009vlx.1_RNA	NM_015557	NP_056372	Q8TDI0	CHD5_HUMAN	chromodomain helicase DNA binding protein 5	1054	Helicase C-terminal.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|DNA binding|zinc ion binding			central_nervous_system(3)|breast(3)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)|skin(1)|pancreas(1)	12	Ovarian(185;0.0634)	all_cancers(23;5.36e-32)|all_epithelial(116;2.32e-17)|all_neural(13;3.68e-06)|all_lung(118;3.94e-06)|all_hematologic(16;2.39e-05)|Lung NSC(185;5.33e-05)|Acute lymphoblastic leukemia(12;0.000372)|Glioma(11;0.00127)|Renal(390;0.00188)|Colorectal(325;0.00342)|Breast(487;0.00373)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.15)		Epithelial(90;3.08e-37)|GBM - Glioblastoma multiforme(13;1.36e-31)|OV - Ovarian serous cystadenocarcinoma(86;7.7e-19)|Colorectal(212;9.97e-08)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(185;6.16e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.00109)|BRCA - Breast invasive adenocarcinoma(365;0.0012)|STAD - Stomach adenocarcinoma(132;0.00346)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.193)		TCCAGGAGGTCCAGCATCTTG	0.632													20	38					0	0	0.014323	0	0
CHD5	26038	broad.mit.edu	37	1	6209413	6209413	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:6209413C>T	uc001amb.1	-	8	1154	c.1054G>A	c.(1054-1056)GGT>AGT	p.G352S	CHD5_uc001amc.1_5'Flank	NM_015557	NP_056372	Q8TDI0	CHD5_HUMAN	chromodomain helicase DNA binding protein 5	352	PHD-type 1.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|DNA binding|zinc ion binding			central_nervous_system(3)|breast(3)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)|skin(1)|pancreas(1)	12	Ovarian(185;0.0634)	all_cancers(23;5.36e-32)|all_epithelial(116;2.32e-17)|all_neural(13;3.68e-06)|all_lung(118;3.94e-06)|all_hematologic(16;2.39e-05)|Lung NSC(185;5.33e-05)|Acute lymphoblastic leukemia(12;0.000372)|Glioma(11;0.00127)|Renal(390;0.00188)|Colorectal(325;0.00342)|Breast(487;0.00373)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.15)		Epithelial(90;3.08e-37)|GBM - Glioblastoma multiforme(13;1.36e-31)|OV - Ovarian serous cystadenocarcinoma(86;7.7e-19)|Colorectal(212;9.97e-08)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(185;6.16e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.00109)|BRCA - Breast invasive adenocarcinoma(365;0.0012)|STAD - Stomach adenocarcinoma(132;0.00346)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.193)		ATCTCCCCACCCTGCTGGCAC	0.597													20	26					0	0	0.010504	0	0
PLEKHG5	57449	broad.mit.edu	37	1	6528454	6528454	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:6528454G>A	uc001ano.1	-	21	2711	c.2610C>T	c.(2608-2610)TCC>TCT	p.S870S	PLEKHG5_uc001ann.1_Silent_p.S851S|PLEKHG5_uc001anq.1_Intron|PLEKHG5_uc001anp.1_Silent_p.S891S|TNFRSF25_uc001ana.2_5'Flank|TNFRSF25_uc001anb.2_5'Flank|TNFRSF25_uc001anc.2_5'Flank|TNFRSF25_uc001and.2_5'Flank|TNFRSF25_uc009vlz.2_5'Flank|TNFRSF25_uc001ane.2_5'Flank|TNFRSF25_uc001anf.2_5'Flank|TNFRSF25_uc001ang.2_5'Flank|TNFRSF25_uc001anh.2_5'Flank|TNFRSF25_uc001ani.1_5'Flank|PLEKHG5_uc001anj.1_Silent_p.S375S|PLEKHG5_uc009vma.1_Silent_p.S654S|PLEKHG5_uc010nzr.1_Silent_p.S883S|PLEKHG5_uc001ank.1_Silent_p.S814S|PLEKHG5_uc009vmb.1_Silent_p.S814S|PLEKHG5_uc001anl.1_Silent_p.S814S|PLEKHG5_uc001anm.1_Silent_p.S814S|PLEKHG5_uc001anr.1_Silent_p.S77S	NM_001042663	NP_001036128	O94827	PKHG5_HUMAN	pleckstrin homology domain containing family G	870					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|perinuclear region of cytoplasm	Rho guanyl-nucleotide exchange factor activity|signal transducer activity			liver(1)	1	Ovarian(185;0.02)|all_lung(157;0.154)	all_cancers(23;1.7e-35)|all_epithelial(116;2.78e-22)|all_lung(118;7.57e-07)|Lung NSC(185;4.26e-06)|Colorectal(325;4.47e-05)|all_hematologic(16;0.00014)|Breast(487;0.000688)|Renal(390;0.0007)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0448)		Epithelial(90;5.51e-35)|GBM - Glioblastoma multiforme(13;3.57e-27)|Colorectal(212;6.23e-08)|COAD - Colon adenocarcinoma(227;1.33e-05)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000894)|BRCA - Breast invasive adenocarcinoma(365;0.00107)|STAD - Stomach adenocarcinoma(132;0.00159)|READ - Rectum adenocarcinoma(331;0.0419)		CAGAGTCCATGGAGCAGGAGC	0.652													5	8					0	0	0.001168	0	0
TAS1R1	80835	broad.mit.edu	37	1	6634974	6634974	+	Missense_Mutation	SNP	G	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:6634974G>C	uc001ant.2	+	3	782	c.782G>C	c.(781-783)CGC>CCC	p.R261P	TAS1R1_uc001anu.2_Intron|TAS1R1_uc001anv.2_Intron|TAS1R1_uc001anw.2_Missense_Mutation_p.R261P	NM_138697	NP_619642	Q7RTX1	TS1R1_HUMAN	sweet taste receptor T1r isoform b	261	Extracellular (Potential).				sensory perception of umami taste	plasma membrane	protein heterodimerization activity|taste receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3	Ovarian(185;0.0212)|all_lung(157;0.154)	all_cancers(23;8.73e-34)|all_epithelial(116;9.26e-22)|all_lung(118;7.57e-07)|Lung NSC(185;4.26e-06)|Breast(487;0.000353)|Renal(390;0.0007)|Colorectal(325;0.00104)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0443)		Colorectal(212;1.29e-07)|COAD - Colon adenocarcinoma(227;1.33e-05)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000896)|BRCA - Breast invasive adenocarcinoma(365;0.00108)|STAD - Stomach adenocarcinoma(132;0.0167)|READ - Rectum adenocarcinoma(331;0.0642)		TGCCTCATGCGCCACCTGGCC	0.612													14	55					0	0	0.002450	0	0
CAMTA1	23261	broad.mit.edu	37	1	7724669	7724669	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:7724669G>A	uc001aoi.2	+	9	2269	c.2062G>A	c.(2062-2064)GGG>AGG	p.G688R		NM_015215	NP_056030	Q9Y6Y1	CMTA1_HUMAN	calmodulin-binding transcription activator 1	688					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	calmodulin binding			ovary(5)|central_nervous_system(2)|breast(1)|pancreas(1)	9	Ovarian(185;0.0634)	all_epithelial(116;8.38e-23)|all_lung(118;5.87e-07)|Lung NSC(185;3.43e-06)|Renal(390;0.000219)|Breast(487;0.000307)|Colorectal(325;0.000615)|Hepatocellular(190;0.0088)|Myeloproliferative disorder(586;0.0303)|Ovarian(437;0.0388)		UCEC - Uterine corpus endometrioid carcinoma (279;0.101)|Colorectal(212;1.33e-05)|COAD - Colon adenocarcinoma(227;0.000235)|BRCA - Breast invasive adenocarcinoma(304;0.000864)|Kidney(185;0.00244)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0179)|READ - Rectum adenocarcinoma(331;0.133)		GACGGCAGAAGGGGAGGTCAC	0.637													25	45					0	0	0.003954	0	0
SLC45A1	50651	broad.mit.edu	37	1	8384558	8384558	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:8384558C>T	uc001apb.2	+	1	169	c.169C>T	c.(169-171)CGT>TGT	p.R57C		NM_001080397	NP_001073866	Q9Y2W3	S45A1_HUMAN	DNB5	57					carbohydrate transport	integral to membrane	symporter activity			central_nervous_system(2)|pancreas(1)|skin(1)	4	Ovarian(185;0.0661)|all_lung(157;0.127)	all_epithelial(116;1.22e-15)|all_lung(118;0.000147)|Lung NSC(185;0.000251)|Renal(390;0.000469)|Colorectal(325;0.00578)|Breast(348;0.00686)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.11)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;3.95e-66)|GBM - Glioblastoma multiforme(8;5.93e-33)|Colorectal(212;2.86e-07)|COAD - Colon adenocarcinoma(227;3.11e-05)|Kidney(185;5.33e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000513)|KIRC - Kidney renal clear cell carcinoma(229;0.000979)|STAD - Stomach adenocarcinoma(132;0.00199)|READ - Rectum adenocarcinoma(331;0.0649)		GAAGTGCATTCGTCCCTCCCC	0.647													10	30					0	0	0.010729	0	0
SLC45A1	50651	broad.mit.edu	37	1	8395530	8395530	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:8395530G>A	uc001apb.2	+	5	1477	c.1477G>A	c.(1477-1479)GAG>AAG	p.E493K	SLC45A1_uc001apc.2_Missense_Mutation_p.E191K	NM_001080397	NP_001073866	Q9Y2W3	S45A1_HUMAN	DNB5	493					carbohydrate transport	integral to membrane	symporter activity			central_nervous_system(2)|pancreas(1)|skin(1)	4	Ovarian(185;0.0661)|all_lung(157;0.127)	all_epithelial(116;1.22e-15)|all_lung(118;0.000147)|Lung NSC(185;0.000251)|Renal(390;0.000469)|Colorectal(325;0.00578)|Breast(348;0.00686)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.11)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;3.95e-66)|GBM - Glioblastoma multiforme(8;5.93e-33)|Colorectal(212;2.86e-07)|COAD - Colon adenocarcinoma(227;3.11e-05)|Kidney(185;5.33e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000513)|KIRC - Kidney renal clear cell carcinoma(229;0.000979)|STAD - Stomach adenocarcinoma(132;0.00199)|READ - Rectum adenocarcinoma(331;0.0649)		CGTGAAGTATGAGAGCGAGCT	0.647													31	74					0	0	0.003271	0	0
UBE4B	10277	broad.mit.edu	37	1	10182103	10182103	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:10182103C>T	uc001aqs.3	+	10	2236	c.1523C>T	c.(1522-1524)ACC>ATC	p.T508I	UBE4B_uc001aqr.3_Missense_Mutation_p.T379I|UBE4B_uc010oai.1_RNA|UBE4B_uc010oaj.1_Intron	NM_001105562	NP_001099032	O95155	UBE4B_HUMAN	ubiquitination factor E4B isoform 1	508					apoptosis|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to UV	cytoplasm|ubiquitin ligase complex	enzyme binding			ovary(2)|skin(2)	4		all_lung(284;1.13e-05)|Lung NSC(185;1.74e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0268)|Colorectal(212;1.42e-07)|COAD - Colon adenocarcinoma(227;2.77e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000435)|Kidney(185;0.000482)|KIRC - Kidney renal clear cell carcinoma(229;0.00164)|STAD - Stomach adenocarcinoma(132;0.0117)|READ - Rectum adenocarcinoma(331;0.046)		CTGGTGAGAACCACTCACCAG	0.488													27	53					0	0	0.009535	0	0
CASZ1	54897	broad.mit.edu	37	1	10720315	10720315	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:10720315C>T	uc001aro.2	-	6	1104	c.784G>A	c.(784-786)GAG>AAG	p.E262K	CASZ1_uc001arp.1_Missense_Mutation_p.E262K|CASZ1_uc009vmx.2_Missense_Mutation_p.E286K|CASZ1_uc001arq.1_Missense_Mutation_p.E121K	NM_001079843	NP_001073312	Q86V15	CASZ1_HUMAN	castor homolog 1, zinc finger isoform a	262					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			skin(1)	1	Ovarian(185;0.203)|all_lung(157;0.204)	Lung NSC(185;4.96e-06)|all_lung(284;1.22e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00212)|Hepatocellular(190;0.00913)|Ovarian(437;0.0229)|Myeloproliferative disorder(586;0.0255)	STAD - Stomach adenocarcinoma(5;0.0224)	UCEC - Uterine corpus endometrioid carcinoma (279;0.0265)|Colorectal(212;3.54e-08)|COAD - Colon adenocarcinoma(227;9.56e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000219)|Kidney(185;0.00142)|KIRC - Kidney renal clear cell carcinoma(229;0.00381)|READ - Rectum adenocarcinoma(331;0.0419)|STAD - Stomach adenocarcinoma(132;0.0623)		ACCCGCTCCTCGGTCTTGGTG	0.687													23	31					0	0	0.012319	0	0
C1orf127	148345	broad.mit.edu	37	1	11024217	11024217	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:11024217C>T	uc010oao.1	-	1	42	c.37G>A	c.(37-39)GAA>AAA	p.E13K	C1orf127_uc001arr.1_Missense_Mutation_p.E13K|C1orf127_uc001ars.1_Missense_Mutation_p.E13K	NM_173507	NP_775778	B7ZLG7	B7ZLG7_HUMAN	hypothetical protein LOC148345	13										ovary(1)	1	Ovarian(185;0.249)	Lung NSC(185;0.000226)|all_lung(284;0.000302)|Renal(390;0.000469)|Colorectal(325;0.0062)|Breast(348;0.0139)|Hepatocellular(190;0.0305)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0731)	STAD - Stomach adenocarcinoma(5;0.0224)	UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.71e-07)|COAD - Colon adenocarcinoma(227;7.79e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000305)|Kidney(185;0.000785)|KIRC - Kidney renal clear cell carcinoma(229;0.00262)|READ - Rectum adenocarcinoma(331;0.0509)		TGGACGCTTTCCTGGCCCAGC	0.562													18	41					0	0	0.008871	0	0
UBIAD1	29914	broad.mit.edu	37	1	11345804	11345804	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:11345804C>T	uc001asg.2	+	2	967	c.633C>T	c.(631-633)GCC>GCT	p.A211A		NM_013319	NP_037451	Q9Y5Z9	UBIA1_HUMAN	UbiA prenyltransferase domain containing 1	211	Helical; (Potential).				menaquinone biosynthetic process	endoplasmic reticulum membrane|integral to membrane|mitochondrion|nucleus	prenyltransferase activity				0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.000818)|all_lung(284;0.00105)|Colorectal(325;0.0062)|Breast(348;0.012)|Hepatocellular(190;0.0305)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;1.52e-06)|COAD - Colon adenocarcinoma(227;0.000254)|BRCA - Breast invasive adenocarcinoma(304;0.000299)|Kidney(185;0.000754)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(313;0.00727)|READ - Rectum adenocarcinoma(331;0.0487)		GGTCCCTGGCCATCTTCCCAC	0.592													27	82					0	0	0.003271	0	0
PTCHD2	57540	broad.mit.edu	37	1	11596669	11596669	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:11596669C>T	uc001ash.3	+	21	4243	c.4105C>T	c.(4105-4107)CTG>TTG	p.L1369L		NM_020780	NP_065831	Q9P2K9	PTHD2_HUMAN	patched domain containing 2	1369	Helical; (Potential).				cholesterol homeostasis|regulation of lipid transport|smoothened signaling pathway	endoplasmic reticulum|integral to membrane|nuclear membrane	hedgehog receptor activity			skin(3)|ovary(2)|pancreas(1)|breast(1)	7	Ovarian(185;0.249)	Lung NSC(185;4.16e-05)|all_lung(284;4.76e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.13e-07)|COAD - Colon adenocarcinoma(227;4.83e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000325)|Kidney(185;0.000877)|KIRC - Kidney renal clear cell carcinoma(229;0.00273)|STAD - Stomach adenocarcinoma(313;0.00766)|READ - Rectum adenocarcinoma(331;0.0549)		GGCAGGGGCCCTGGGGCTGGG	0.682													9	10					0	0	0.006214	0	0
CLCN6	1185	broad.mit.edu	37	1	11889376	11889376	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:11889376C>T	uc001ate.3	+	13	1358	c.1245C>T	c.(1243-1245)CTC>CTT	p.L415L	CLCN6_uc010oat.1_Silent_p.L131L|CLCN6_uc010oau.1_Silent_p.L393L	NM_001286	NP_001277	P51797	CLCN6_HUMAN	chloride channel 6 isoform ClC-6a	415					cell volume homeostasis|signal transduction	endosome membrane|integral to membrane	antiporter activity|ATP binding|voltage-gated chloride channel activity				0	Ovarian(185;0.249)	Lung NSC(185;8.69e-05)|all_lung(284;9.87e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.13e-06)|COAD - Colon adenocarcinoma(227;0.000274)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.000816)|KIRC - Kidney renal clear cell carcinoma(229;0.00268)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0649)		CATTCCAGCTCCAGGTAACCC	0.483													23	42					0	0	0.014323	0	0
CLCN6	1185	broad.mit.edu	37	1	11894319	11894319	+	Missense_Mutation	SNP	C	T	T	rs149710478		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:11894319C>T	uc001ate.3	+	16	1666	c.1553C>T	c.(1552-1554)TCG>TTG	p.S518L	CLCN6_uc010oat.1_Missense_Mutation_p.S234L|CLCN6_uc010oau.1_Missense_Mutation_p.S496L	NM_001286	NP_001277	P51797	CLCN6_HUMAN	chloride channel 6 isoform ClC-6a	518					cell volume homeostasis|signal transduction	endosome membrane|integral to membrane	antiporter activity|ATP binding|voltage-gated chloride channel activity				0	Ovarian(185;0.249)	Lung NSC(185;8.69e-05)|all_lung(284;9.87e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.13e-06)|COAD - Colon adenocarcinoma(227;0.000274)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.000816)|KIRC - Kidney renal clear cell carcinoma(229;0.00268)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0649)		CACATCTATTCGGGGACCTTT	0.542													14	31					0	0	0.003163	0	0
NPPA	4878	broad.mit.edu	37	1	11907251	11907251	+	Silent	SNP	C	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:11907251C>G	uc001ati.2	-	2	468	c.369G>C	c.(367-369)CGG>CGC	p.R123R	CLCN6_uc010oav.1_Intron|CLCN6_uc010oaw.1_Intron|CLCN6_uc010oax.1_Intron|CLCN6_uc010oay.1_Intron|CLCN6_uc010oaz.1_Intron|CLCN6_uc010oba.1_Intron	NM_006172	NP_006163	P01160	ANF_HUMAN	natriuretic peptide precursor A preproprotein	123		Cleavage; by CORIN.		R->G: Loss of cleavage by CORIN.	cGMP biosynthetic process|receptor guanylyl cyclase signaling pathway|regulation of blood pressure|regulation of blood vessel size	extracellular region	hormone activity			ovary(1)|central_nervous_system(1)	2	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00149)|all_lung(284;0.00189)|Breast(348;0.00586)|Colorectal(325;0.0062)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0556)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.04e-06)|COAD - Colon adenocarcinoma(227;0.000245)|BRCA - Breast invasive adenocarcinoma(304;0.000295)|Kidney(185;0.000733)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		TCCGCAGGCTCCGAGGGGCAG	0.642													4	222					0	0	0.009096	0	0
MIIP	60672	broad.mit.edu	37	1	12082306	12082306	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:12082306C>T	uc001ato.1	+	3	449	c.269C>T	c.(268-270)TCG>TTG	p.S90L		NM_021933	NP_068752	Q5JXC2	MIIP_HUMAN	invasion inhibitory protein 45	90										ovary(1)	1						GTGGCCAGATCGGGGGTGGCC	0.677													31	60					0	0	0.005524	0	0
VPS13D	55187	broad.mit.edu	37	1	12328876	12328876	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:12328876C>T	uc001atv.2	+	16	2056	c.1915C>T	c.(1915-1917)CCG>TCG	p.P639S	VPS13D_uc001atw.2_Missense_Mutation_p.P639S	NM_015378	NP_056193	Q5THJ4	VP13D_HUMAN	vacuolar protein sorting 13D isoform 1	639					protein localization					ovary(4)|pancreas(1)	5	Ovarian(185;0.249)	Lung NSC(185;4.08e-05)|all_lung(284;4.55e-05)|Renal(390;0.000147)|Colorectal(325;0.00058)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0327)|Colorectal(212;4.63e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000289)|COAD - Colon adenocarcinoma(227;0.000801)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0476)|Lung(427;0.209)		CATATACAATCCGCAGGCCAT	0.423													41	86					0	0	0.007835	0	0
VPS13D	55187	broad.mit.edu	37	1	12389938	12389938	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:12389938C>T	uc001atv.2	+	37	8391	c.8250C>T	c.(8248-8250)TTC>TTT	p.F2750F	VPS13D_uc001atw.2_Silent_p.F2750F|VPS13D_uc001atx.2_Silent_p.F1938F|VPS13D_uc001aty.1_Silent_p.F488F	NM_015378	NP_056193	Q5THJ4	VP13D_HUMAN	vacuolar protein sorting 13D isoform 1	2750					protein localization					ovary(4)|pancreas(1)	5	Ovarian(185;0.249)	Lung NSC(185;4.08e-05)|all_lung(284;4.55e-05)|Renal(390;0.000147)|Colorectal(325;0.00058)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0327)|Colorectal(212;4.63e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000289)|COAD - Colon adenocarcinoma(227;0.000801)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0476)|Lung(427;0.209)		ATGCCCACTTCACCCTTTCTG	0.418													11	31					0	0	0.013537	0	0
DHRS3	9249	broad.mit.edu	37	1	12639399	12639399	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:12639399G>A	uc001auc.2	-	3	848	c.381C>T	c.(379-381)GTC>GTT	p.V127V	DHRS3_uc001aub.2_Silent_p.V42V|DHRS3_uc009vnm.2_Silent_p.V127V	NM_004753	NP_004744	O75911	DHRS3_HUMAN	dehydrogenase/reductase (SDR family) member 3	127					retinol metabolic process|visual perception	integral to membrane	electron carrier activity|NADP-retinol dehydrogenase activity|nucleotide binding			skin(1)	1	Ovarian(185;0.249)	Lung NSC(185;4.11e-05)|all_lung(284;4.58e-05)|Renal(390;0.000147)|Colorectal(325;0.000585)|Breast(348;0.000596)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.023)|Colorectal(212;9.25e-07)|COAD - Colon adenocarcinoma(227;0.000326)|BRCA - Breast invasive adenocarcinoma(304;0.000344)|Kidney(185;0.00235)|KIRC - Kidney renal clear cell carcinoma(229;0.00656)|STAD - Stomach adenocarcinoma(313;0.00798)|READ - Rectum adenocarcinoma(331;0.0419)	Vitamin A(DB00162)	TCTTCCCATGGACCACGGCGG	0.602													27	34					0	0	0.006320	0	0
PRAMEF1	65121	broad.mit.edu	37	1	12855945	12855945	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:12855945C>T	uc001auj.1	+	4	1328	c.1225C>T	c.(1225-1227)CTG>TTG	p.L409L		NM_023013	NP_075389	O95521	PRAM1_HUMAN	PRAME family member 1	409											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		CAAGTTAAGCCTGGAGACGTA	0.537													34	100					0	0	0.011902	0	0
PRAMEF1	65121	broad.mit.edu	37	1	12856020	12856020	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:12856020C>T	uc001auj.1	+	4	1403	c.1300C>T	c.(1300-1302)CGG>TGG	p.R434W		NM_023013	NP_075389	O95521	PRAM1_HUMAN	PRAME family member 1	434											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		CACCCCACTTCGGGCTGAGCT	0.562													9	253					0	0	0.004990	0	0
PRAMEF11	440560	broad.mit.edu	37	1	12887352	12887352	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:12887352C>T	uc001auk.2	-	3	701	c.505G>A	c.(505-507)GAG>AAG	p.E169K		NM_001146344	NP_001139816	O60813	PRA11_HUMAN	PRAME family member 11	169											0						ACTTCCACCTCCTGGATACAG	0.463													112	269					0	0	0.014410	0	0
LOC649330	649330	broad.mit.edu	37	1	12907336	12907336	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:12907336C>T	uc009vno.2	-	1	902	c.807G>A	c.(805-807)TTG>TTA	p.L269L	HNRNPCL1_uc010obf.1_Silent_p.L269L	NM_001146181	NP_001139653	B7ZW38	B7ZW38_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	269							nucleic acid binding|nucleotide binding				0						CATCCTTGATCAACTCCAGCT	0.502													15	228					0	0	0.004007	0	0
LOC649330	649330	broad.mit.edu	37	1	12907649	12907649	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:12907649C>T	uc009vno.2	-	1	589	c.494G>A	c.(493-495)GGA>GAA	p.G165E	HNRNPCL1_uc010obf.1_Missense_Mutation_p.G165E	NM_001146181	NP_001139653	B7ZW38	B7ZW38_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	165							nucleic acid binding|nucleotide binding				0						TCCCCGCTTTCCACTCTTAGA	0.493													88	174					0	0	0.014410	0	0
PRAMEF2	65122	broad.mit.edu	37	1	12920100	12920100	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:12920100C>T	uc001aum.1	+	3	927	c.840C>T	c.(838-840)TTC>TTT	p.F280F		NM_023014	NP_075390	O60811	PRAM2_HUMAN	PRAME family member 2	280											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;2.4e-06)|Kidney(185;4.89e-05)|COAD - Colon adenocarcinoma(227;0.000152)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		TCACCTTCTTCAGTGGGCACC	0.458													39	79					0	0	0.008740	0	0
LOC440563	440563	broad.mit.edu	37	1	13183479	13183479	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:13183479G>A	uc010obg.1	-	1	489	c.394C>T	c.(394-396)CCT>TCT	p.P132S		NM_001136561	NP_001130033	B2RXH8	B2RXH8_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	132						ribonucleoprotein complex	nucleic acid binding|nucleotide binding				0						GGAGGAGGAGGAGGTACACGT	0.512													41	176					0	0	0.005524	0	0
PRAMEF17	391004	broad.mit.edu	37	1	13716932	13716932	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:13716932G>A	uc009vnz.1	+	2	449	c.419G>A	c.(418-420)AGG>AAG	p.R140K		NM_001099851	NP_001093321	Q5VTA0	PRA17_HUMAN	PRAME family member 17	140											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;9.86e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|COAD - Colon adenocarcinoma(227;0.000502)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		GACTATCCAAGGACGGGAGAG	0.537													40	161					0	0	0.014410	0	0
PDPN	10630	broad.mit.edu	37	1	13940889	13940889	+	Missense_Mutation	SNP	A	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:13940889A>T	uc001avd.2	+	5	742	c.693A>T	c.(691-693)AAA>AAT	p.K231N	PDPN_uc001avc.2_Missense_Mutation_p.K231N|PDPN_uc009vob.2_Missense_Mutation_p.K113N|PDPN_uc009voc.2_Missense_Mutation_p.K113N|PDPN_uc001ave.2_Missense_Mutation_p.K113N|PDPN_uc001avf.2_Missense_Mutation_p.K113N	NM_006474	NP_006465	Q86YL7	PDPN_HUMAN	lung type-I cell membrane-associated	155	Cytoplasmic (Potential).				cell morphogenesis|lymphangiogenesis|regulation of cell shape	filopodium membrane|integral to plasma membrane|lamellipodium membrane|microvillus membrane|ruffle membrane				ovary(2)	2	Ovarian(185;0.249)	all_lung(284;2.29e-05)|Lung NSC(185;4.37e-05)|Renal(390;0.000147)|Breast(348;0.000162)|Colorectal(325;0.00058)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)	GBM - Glioblastoma multiforme(2;0.00182)	UCEC - Uterine corpus endometrioid carcinoma (279;0.00969)|Colorectal(212;4.48e-06)|COAD - Colon adenocarcinoma(227;0.000194)|BRCA - Breast invasive adenocarcinoma(304;0.000347)|Kidney(185;0.00087)|KIRC - Kidney renal clear cell carcinoma(229;0.0027)|STAD - Stomach adenocarcinoma(313;0.00802)|READ - Rectum adenocarcinoma(331;0.0678)		TTATGCGAAAAATGTCGGGAA	0.418													36	72					0	0	0.006999	0	0
AGMAT	79814	broad.mit.edu	37	1	15905500	15905500	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:15905500C>T	uc001awv.1	-	4	717	c.574G>A	c.(574-576)GAC>AAC	p.D192N	DNAJC16_uc001awu.2_Intron	NM_024758	NP_079034	Q9BSE5	SPEB_HUMAN	agmatine ureohydrolase (agmatinase) precursor	192					putrescine biosynthetic process|spermidine biosynthetic process	mitochondrion	agmatinase activity|metal ion binding			skin(1)	1		Breast(348;0.000207)|Colorectal(325;0.000258)|Lung NSC(340;0.000359)|all_lung(284;0.000486)|Renal(390;0.000518)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.93e-07)|COAD - Colon adenocarcinoma(227;3.91e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000121)|KIRC - Kidney renal clear cell carcinoma(229;0.00257)|STAD - Stomach adenocarcinoma(313;0.00734)|READ - Rectum adenocarcinoma(331;0.0649)		AGGGCCTTGTCGGTCGTGTCC	0.647													17	19					0	0	0.007413	0	0
SLC25A34	284723	broad.mit.edu	37	1	16063165	16063165	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:16063165G>A	uc001axb.1	+	1	357	c.185G>A	c.(184-186)CGA>CAA	p.R62Q	SLC25A34_uc009vok.1_5'Flank	NM_207348	NP_997231	Q6PIV7	S2534_HUMAN	solute carrier family 25, member 34	62	Solcar 1.|Helical; Name=2; (Potential).				transport	integral to membrane|mitochondrial inner membrane					0		Colorectal(325;0.00108)|Renal(390;0.00145)|Breast(348;0.00224)|Lung NSC(340;0.00566)|all_lung(284;0.00831)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0798)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.96e-07)|COAD - Colon adenocarcinoma(227;3.56e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000115)|KIRC - Kidney renal clear cell carcinoma(229;0.00244)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		GCTGTGGCCCGAGCAGACGGG	0.662													7	25					0	0	0.003080	0	0
SLC25A34	284723	broad.mit.edu	37	1	16063167	16063167	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:16063167G>A	uc001axb.1	+	1	359	c.187G>A	c.(187-189)GCA>ACA	p.A63T	SLC25A34_uc009vok.1_5'Flank	NM_207348	NP_997231	Q6PIV7	S2534_HUMAN	solute carrier family 25, member 34	63	Solcar 1.|Helical; Name=2; (Potential).				transport	integral to membrane|mitochondrial inner membrane					0		Colorectal(325;0.00108)|Renal(390;0.00145)|Breast(348;0.00224)|Lung NSC(340;0.00566)|all_lung(284;0.00831)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0798)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.96e-07)|COAD - Colon adenocarcinoma(227;3.56e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000115)|KIRC - Kidney renal clear cell carcinoma(229;0.00244)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		TGTGGCCCGAGCAGACGGGCT	0.662													7	26					0	0	0.003080	0	0
FBLIM1	54751	broad.mit.edu	37	1	16095027	16095027	+	Missense_Mutation	SNP	C	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:16095027C>A	uc001axd.1	+	6	886	c.443C>A	c.(442-444)CCA>CAA	p.P148Q	FBLIM1_uc001axe.1_Missense_Mutation_p.P148Q|FBLIM1_uc001axf.2_RNA|FBLIM1_uc001axg.1_Missense_Mutation_p.P148Q|FBLIM1_uc001axh.1_Intron|FBLIM1_uc001axi.1_Intron	NM_017556	NP_060026	Q8WUP2	FBLI1_HUMAN	filamin-binding LIM protein-1 isoform a	148	Pro-rich.				cell adhesion|cell junction assembly|regulation of cell shape	cell cortex|cytoskeleton|cytosol|focal adhesion|intracellular membrane-bounded organelle	zinc ion binding			skin(1)	1		Colorectal(325;0.000257)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.96e-07)|COAD - Colon adenocarcinoma(227;3.56e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000115)|KIRC - Kidney renal clear cell carcinoma(229;0.00244)|READ - Rectum adenocarcinoma(331;0.0649)|STAD - Stomach adenocarcinoma(313;0.138)		CCACAGGCCCCAGCGGAGGGA	0.587													18	29					4.96729e-08	5.33403e-08	0.008871	1	0
HSPB7	27129	broad.mit.edu	37	1	16343579	16343579	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:16343579C>T	uc001axo.2	-	2	1150	c.323G>A	c.(322-324)CGG>CAG	p.R108Q	HSPB7_uc001axp.2_Intron|HSPB7_uc001axq.2_Missense_Mutation_p.R200Q|HSPB7_uc001axr.2_Missense_Mutation_p.R201Q|HSPB7_uc001axs.2_Missense_Mutation_p.R183Q|CLCNKA_uc001axt.2_5'Flank	NM_014424	NP_055239	Q9UBY9	HSPB7_HUMAN	cardiovascular heat shock protein	108					regulation of heart contraction|response to heat|response to unfolded protein	Cajal body	protein C-terminus binding				0		Colorectal(325;3.46e-05)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Colorectal(212;8.21e-08)|COAD - Colon adenocarcinoma(227;5.5e-06)|BRCA - Breast invasive adenocarcinoma(304;9.08e-05)|Kidney(64;0.000162)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(313;0.00656)|READ - Rectum adenocarcinoma(331;0.0649)		CTTCTCAGCCCGCACCTCGAT	0.567													33	78					0	0	0.012213	0	0
CLCNKA	1187	broad.mit.edu	37	1	16353030	16353031	+	Splice_Site	DNP	GG	AT	AT			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:16353030_16353031GG>AT	uc001axu.2	+	6	579	c.499_splice	c.e6-1	p.G167_splice	CLCNKA_uc001axt.2_Splice_Site|CLCNKA_uc001axv.2_Splice_Site_p.G167_splice|CLCNKA_uc010obw.1_Splice_Site_p.G124_splice|CLCNKB_uc001axw.3_Intron|CLCNKA_uc010obx.1_5'Flank|CLCNKA_uc010oby.1_5'Flank	NM_004070	NP_004061	P51800	CLCKA_HUMAN	chloride channel Ka isoform 1						excretion	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			ovary(1)	1		Colorectal(325;3.46e-05)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Colorectal(212;8.04e-08)|COAD - Colon adenocarcinoma(227;5.46e-06)|BRCA - Breast invasive adenocarcinoma(304;9.02e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(313;0.00655)|READ - Rectum adenocarcinoma(331;0.0649)	Niflumic Acid(DB04552)	TCCCTCTGCAGGGCCCTTTCGT	0.658													9	55					0	0	0.004672	0	0
CLCNKA	1187	broad.mit.edu	37	1	16355340	16355340	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:16355340G>A	uc001axu.2	+	11	1133	c.1053G>A	c.(1051-1053)CGG>CGA	p.R351R	CLCNKA_uc001axt.2_RNA|CLCNKA_uc001axv.2_Silent_p.R351R|CLCNKA_uc010obw.1_Silent_p.R308R|CLCNKB_uc001axw.3_Intron|CLCNKA_uc010obx.1_5'UTR|CLCNKA_uc010oby.1_Missense_Mutation_p.A81T	NM_004070	NP_004061	P51800	CLCKA_HUMAN	chloride channel Ka isoform 1	351					excretion	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			ovary(1)	1		Colorectal(325;3.46e-05)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Colorectal(212;8.04e-08)|COAD - Colon adenocarcinoma(227;5.46e-06)|BRCA - Breast invasive adenocarcinoma(304;9.02e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(313;0.00655)|READ - Rectum adenocarcinoma(331;0.0649)	Niflumic Acid(DB04552)	TAGCTTCTCGGGTAAGGGGTC	0.488													30	48					0	0	0.003271	0	0
EPHA2	1969	broad.mit.edu	37	1	16460021	16460021	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:16460021C>T	uc001aya.1	-	10	1956	c.1819G>A	c.(1819-1821)GAG>AAG	p.E607K		NM_004431	NP_004422	P29317	EPHA2_HUMAN	ephrin receptor EphA2 precursor	607	Mediates interaction with ARHGEF16 and ELMO2.|Cytoplasmic (Potential).				activation of Rac GTPase activity|angiogenesis|apoptosis|cell chemotaxis|negative regulation of protein kinase B signaling cascade|positive regulation of establishment of protein localization in plasma membrane|protein kinase B signaling cascade|regulation of blood vessel endothelial cell migration|regulation of cell adhesion mediated by integrin|regulation of lamellipodium assembly|response to growth factor stimulus	focal adhesion|integral to plasma membrane|lamellipodium membrane|ruffle membrane	ATP binding|ephrin receptor activity|protein binding			lung(3)|central_nervous_system(3)|stomach(2)|ovary(2)	10		Colorectal(325;3.46e-05)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0181)|Colorectal(212;3.63e-07)|COAD - Colon adenocarcinoma(227;2.25e-05)|BRCA - Breast invasive adenocarcinoma(304;9.58e-05)|Kidney(64;0.000175)|KIRC - Kidney renal clear cell carcinoma(64;0.00261)|STAD - Stomach adenocarcinoma(313;0.00669)|READ - Rectum adenocarcinoma(331;0.0649)	Dasatinib(DB01254)	GGATGGATCTCGGTAGTGAAC	0.592													25	34					0	0	0.003954	0	0
EPHA2	1969	broad.mit.edu	37	1	16461625	16461625	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:16461625G>A	uc001aya.1	-	7	1625	c.1488C>T	c.(1486-1488)GAC>GAT	p.D496D		NM_004431	NP_004422	P29317	EPHA2_HUMAN	ephrin receptor EphA2 precursor	496	Extracellular (Potential).|Fibronectin type-III 2.				activation of Rac GTPase activity|angiogenesis|apoptosis|cell chemotaxis|negative regulation of protein kinase B signaling cascade|positive regulation of establishment of protein localization in plasma membrane|protein kinase B signaling cascade|regulation of blood vessel endothelial cell migration|regulation of cell adhesion mediated by integrin|regulation of lamellipodium assembly|response to growth factor stimulus	focal adhesion|integral to plasma membrane|lamellipodium membrane|ruffle membrane	ATP binding|ephrin receptor activity|protein binding			lung(3)|central_nervous_system(3)|stomach(2)|ovary(2)	10		Colorectal(325;3.46e-05)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0181)|Colorectal(212;3.63e-07)|COAD - Colon adenocarcinoma(227;2.25e-05)|BRCA - Breast invasive adenocarcinoma(304;9.58e-05)|Kidney(64;0.000175)|KIRC - Kidney renal clear cell carcinoma(64;0.00261)|STAD - Stomach adenocarcinoma(313;0.00669)|READ - Rectum adenocarcinoma(331;0.0649)	Dasatinib(DB01254)	CTGGGGCCAGGTCGTCCAGGG	0.662													83	140					0	0	0.014410	0	0
NBPF1	55672	broad.mit.edu	37	1	16892227	16892227	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:16892227G>A	uc009vos.1	-	28	4078	c.3190C>T	c.(3190-3192)CCT>TCT	p.P1064S	uc001ayw.2_5'Flank	NM_017940	NP_060410	Q3BBV0	NBPF1_HUMAN	hypothetical protein LOC55672	1064	NBPF 7.					cytoplasm					0				UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		CAACTGGAAGGAGTTGAATAA	0.473													23	845					0	0	0.004656	0	0
CROCCL1	84809	broad.mit.edu	37	1	16945450	16945450	+	RNA	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:16945450G>A	uc010ocf.1	-	4		c.707C>T			CROCCL1_uc009vov.1_RNA|CROCCL1_uc001aze.2_RNA|CROCCL1_uc001azf.2_RNA					Homo sapiens mRNA for FLJ00313 protein.												0						GCCTCCCTACGACGGCAGGCC	0.642													9	96					0	0	0.006214	0	0
MST1P2	11209	broad.mit.edu	37	1	16974216	16974216	+	RNA	SNP	G	C	C	rs140637426		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:16974216G>C	uc009vow.2	+	5		c.1026G>C			MST1P2_uc010ocg.1_RNA|MST1P2_uc010och.1_Intron|MST1P2_uc010oci.1_RNA|MST1P2_uc001azk.2_Intron|MST1P2_uc001azl.3_RNA|MST1P2_uc009vox.2_Intron|MST1P2_uc001azm.3_Intron					Homo sapiens cDNA FLJ53774 complete cds, moderately similar to Hepatocyte growth factor-like protein precursor.												0						AGGCGGGTTTGGTCCCAGCCC	0.662													3	9					0	0	0.004672	0	0
MST1P2	11209	broad.mit.edu	37	1	16976623	16976623	+	RNA	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:16976623G>A	uc010och.1	+	14		c.2344G>A			MST1P2_uc001azl.3_RNA|MST1P2_uc009vox.2_RNA|MST1P2_uc001azm.3_RNA	NR_027504				Homo sapiens cDNA FLJ43241 fis, clone HEART1000010, weakly  similar to Hepatocyte growth factor-like protein precursor.												0						GGTCCTGAAAGGAATTAGAAT	0.577													4	85					0	0	0.000602	0	0
MST1P9	11223	broad.mit.edu	37	1	17085656	17085656	+	Nonsense_Mutation	SNP	G	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:17085656G>T	uc010ock.1	-	9	1065	c.1065C>A	c.(1063-1065)TAC>TAA	p.Y355*	CROCC_uc009voy.1_Intron|MST1P9_uc001azp.3_5'UTR	NR_002729				SubName: Full=Hepatocyte growth factor-like protein homolog;												0						CCGCGCCGTGGTAGCAGTCTG	0.711													5	49					0.000602214	0.000642832	0.000602	1	0
MST1P9	11223	broad.mit.edu	37	1	17086000	17086000	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:17086000C>T	uc010ock.1	-	7	897	c.897G>A	c.(895-897)GGG>GGA	p.G299G	CROCC_uc009voy.1_Intron|MST1P9_uc001azp.3_5'UTR	NR_002729				SubName: Full=Hepatocyte growth factor-like protein homolog;												0						CGCCCGCCCCCCCGCCCACCT	0.657													8	5					0	0	0.004482	0	0
CROCC	9696	broad.mit.edu	37	1	17277559	17277559	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:17277559C>T	uc001azt.2	+	20	3017	c.2948C>T	c.(2947-2949)TCT>TTT	p.S983F	CROCC_uc009voz.1_Intron|CROCC_uc001azu.2_Missense_Mutation_p.S286F	NM_014675	NP_055490	Q5TZA2	CROCC_HUMAN	ciliary rootlet coiled-coil	983	Potential.				cell cycle|cell projection organization|centrosome organization|protein localization	actin cytoskeleton|centriole|ciliary rootlet|plasma membrane	kinesin binding|structural molecule activity			ovary(2)|breast(2)|central_nervous_system(1)	5		Colorectal(325;3.46e-05)|Breast(348;0.000162)|Lung NSC(340;0.000174)|all_lung(284;0.000234)|Renal(390;0.000518)|Ovarian(437;0.00669)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.63e-06)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(64;0.000163)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.181)		GCCCAGGCCTCTCTGCGGGAG	0.622													10	16					0	0	0.008291	0	0
MFAP2	4237	broad.mit.edu	37	1	17301806	17301806	+	Missense_Mutation	SNP	T	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:17301806T>A	uc001azw.2	-	8	539	c.406A>T	c.(406-408)ATC>TTC	p.I136F	MFAP2_uc001azx.2_Missense_Mutation_p.I135F|MFAP2_uc001azy.2_Missense_Mutation_p.I136F|MFAP2_uc010ocl.1_Missense_Mutation_p.I135F	NM_002403	NP_002394	P55001	MFAP2_HUMAN	microfibrillar-associated protein 2 isoform a	136						microfibril					0		Colorectal(325;3.46e-05)|Breast(348;0.000118)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000538)|Ovarian(437;0.00669)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|COAD - Colon adenocarcinoma(227;1.07e-05)|BRCA - Breast invasive adenocarcinoma(304;3.04e-05)|Kidney(64;0.000377)|KIRC - Kidney renal clear cell carcinoma(64;0.00544)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.181)		CGAACACAGATCTCCTTGTTA	0.607													19	27					0	0	0.014323	0	0
PADI3	51702	broad.mit.edu	37	1	17603042	17603042	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:17603042G>A	uc001bai.2	+	12	1376	c.1336G>A	c.(1336-1338)GTG>ATG	p.V446M		NM_016233	NP_057317	Q9ULW8	PADI3_HUMAN	peptidyl arginine deiminase, type III	446					peptidyl-citrulline biosynthetic process from peptidyl-arginine	cytoplasm	calcium ion binding|protein-arginine deiminase activity			ovary(1)|breast(1)	2		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000337)|Lung NSC(340;0.000419)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00488)|BRCA - Breast invasive adenocarcinoma(304;1.17e-05)|COAD - Colon adenocarcinoma(227;1.18e-05)|Kidney(64;0.000186)|KIRC - Kidney renal clear cell carcinoma(64;0.00272)|STAD - Stomach adenocarcinoma(196;0.00656)|READ - Rectum adenocarcinoma(331;0.0655)|Lung(427;0.189)	L-Citrulline(DB00155)	CACCCAGGTGGTGCGGGACTT	0.532													32	60					0	0	0.012213	0	0
PADI4	23569	broad.mit.edu	37	1	17690199	17690199	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:17690199C>T	uc001baj.2	+	16	1969	c.1941C>T	c.(1939-1941)ACC>ACT	p.T647T		NM_012387	NP_036519	Q9UM07	PADI4_HUMAN	peptidyl arginine deiminase, type IV	647					chromatin modification|peptidyl-citrulline biosynthetic process from peptidyl-arginine|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	calcium ion binding|protein-arginine deiminase activity			ovary(1)|skin(1)	2		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000338)|Lung NSC(340;0.00042)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00537)|BRCA - Breast invasive adenocarcinoma(304;8.54e-06)|COAD - Colon adenocarcinoma(227;1.33e-05)|Kidney(64;0.000223)|KIRC - Kidney renal clear cell carcinoma(64;0.00313)|STAD - Stomach adenocarcinoma(196;0.00707)|READ - Rectum adenocarcinoma(331;0.0689)|Lung(427;0.199)	L-Citrulline(DB00155)	ACTGCGGCACCAACGTGCGCA	0.602													12	22					0	0	0.013537	0	0
IGSF21	84966	broad.mit.edu	37	1	18618479	18618479	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:18618479G>A	uc001bau.1	+	3	686	c.303G>A	c.(301-303)GTG>GTA	p.V101V		NM_032880	NP_116269	Q96ID5	IGS21_HUMAN	immunoglobin superfamily, member 21 precursor	101	Ig-like 1.					extracellular region				ovary(2)|large_intestine(1)|skin(1)	4		Colorectal(325;0.000147)|Renal(390;0.00145)|all_lung(284;0.00366)|Lung NSC(340;0.00376)|Breast(348;0.00387)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0121)|BRCA - Breast invasive adenocarcinoma(304;5.52e-05)|Kidney(64;0.00103)|KIRC - Kidney renal clear cell carcinoma(64;0.0102)|STAD - Stomach adenocarcinoma(196;0.0118)|READ - Rectum adenocarcinoma(331;0.157)		AGTCCACTGTGAGGTGAGTGC	0.597													39	81					0	0	0.014410	0	0
KLHDC7A	127707	broad.mit.edu	37	1	18807949	18807949	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:18807949C>T	uc001bax.2	+	1	526	c.474C>T	c.(472-474)TTC>TTT	p.F158F	KLHDC7A_uc009vpg.2_5'UTR	NM_152375	NP_689588	Q5VTJ3	KLD7A_HUMAN	kelch domain containing 7A	158						integral to membrane				ovary(2)|upper_aerodigestive_tract(1)	3		Colorectal(325;3.46e-05)|all_lung(284;0.000152)|Lung NSC(340;0.000185)|Breast(348;0.00046)|Renal(390;0.000518)|Ovarian(437;0.0014)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00462)|BRCA - Breast invasive adenocarcinoma(304;1.41e-05)|Kidney(64;0.00017)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		CTCCCCATTTCCCCCGCTTGG	0.647													17	33					0	0	0.006122	0	0
KLHDC7A	127707	broad.mit.edu	37	1	18808905	18808905	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:18808905G>A	uc001bax.2	+	1	1482	c.1430G>A	c.(1429-1431)GGG>GAG	p.G477E	KLHDC7A_uc009vpg.2_Missense_Mutation_p.G259E	NM_152375	NP_689588	Q5VTJ3	KLD7A_HUMAN	kelch domain containing 7A	477						integral to membrane				ovary(2)|upper_aerodigestive_tract(1)	3		Colorectal(325;3.46e-05)|all_lung(284;0.000152)|Lung NSC(340;0.000185)|Breast(348;0.00046)|Renal(390;0.000518)|Ovarian(437;0.0014)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00462)|BRCA - Breast invasive adenocarcinoma(304;1.41e-05)|Kidney(64;0.00017)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		TGCCTGAGCGGGGCAGAGCGC	0.667													29	67					0	0	0.006320	0	0
KLHDC7A	127707	broad.mit.edu	37	1	18808916	18808916	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:18808916G>A	uc001bax.2	+	1	1493	c.1441G>A	c.(1441-1443)GAG>AAG	p.E481K	KLHDC7A_uc009vpg.2_Missense_Mutation_p.E263K	NM_152375	NP_689588	Q5VTJ3	KLD7A_HUMAN	kelch domain containing 7A	481						integral to membrane				ovary(2)|upper_aerodigestive_tract(1)	3		Colorectal(325;3.46e-05)|all_lung(284;0.000152)|Lung NSC(340;0.000185)|Breast(348;0.00046)|Renal(390;0.000518)|Ovarian(437;0.0014)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00462)|BRCA - Breast invasive adenocarcinoma(304;1.41e-05)|Kidney(64;0.00017)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		GGCAGAGCGCGAGCTGATCCT	0.657													27	61					0	0	0.004656	0	0
KLHDC7A	127707	broad.mit.edu	37	1	18809104	18809104	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:18809104C>T	uc001bax.2	+	1	1681	c.1629C>T	c.(1627-1629)TTC>TTT	p.F543F	KLHDC7A_uc009vpg.2_Silent_p.F325F	NM_152375	NP_689588	Q5VTJ3	KLD7A_HUMAN	kelch domain containing 7A	543	Kelch 3.					integral to membrane				ovary(2)|upper_aerodigestive_tract(1)	3		Colorectal(325;3.46e-05)|all_lung(284;0.000152)|Lung NSC(340;0.000185)|Breast(348;0.00046)|Renal(390;0.000518)|Ovarian(437;0.0014)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00462)|BRCA - Breast invasive adenocarcinoma(304;1.41e-05)|Kidney(64;0.00017)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		ATTATCTCTTCGTGGTGTCCG	0.667													24	40					0	0	0.003330	0	0
KLHDC7A	127707	broad.mit.edu	37	1	18809748	18809748	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:18809748G>A	uc001bax.2	+	1	2325	c.2273G>A	c.(2272-2274)GGC>GAC	p.G758D	KLHDC7A_uc009vpg.2_Intron	NM_152375	NP_689588	Q5VTJ3	KLD7A_HUMAN	kelch domain containing 7A	758						integral to membrane				ovary(2)|upper_aerodigestive_tract(1)	3		Colorectal(325;3.46e-05)|all_lung(284;0.000152)|Lung NSC(340;0.000185)|Breast(348;0.00046)|Renal(390;0.000518)|Ovarian(437;0.0014)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00462)|BRCA - Breast invasive adenocarcinoma(304;1.41e-05)|Kidney(64;0.00017)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		GCCCCGCAGGGCACCCTCCTG	0.642													25	61					0	0	0.005443	0	0
TAS1R2	80834	broad.mit.edu	37	1	19180731	19180731	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:19180731G>A	uc001bba.1	-	3	1234	c.1233C>T	c.(1231-1233)ACC>ACT	p.T411T		NM_152232	NP_689418	Q8TE23	TS1R2_HUMAN	taste receptor, type 1, member 2 precursor	411	Extracellular (Potential).				detection of chemical stimulus involved in sensory perception of sweet taste	plasma membrane	protein heterodimerization activity|taste receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Colorectal(325;3.46e-05)|all_lung(284;0.000321)|Lung NSC(340;0.000398)|Renal(390;0.000518)|Breast(348;0.000812)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00466)|BRCA - Breast invasive adenocarcinoma(304;3.56e-05)|Kidney(64;0.000177)|KIRC - Kidney renal clear cell carcinoma(64;0.00262)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)	Aspartame(DB00168)	CCACCCTCTTGGTGCAGGTGC	0.627													10	29					0	0	0.013537	0	0
AKR7L	246181	broad.mit.edu	37	1	19597021	19597021	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:19597021T>C	uc010ocx.1	-	4	431	c.431A>G	c.(430-432)AAC>AGC	p.N144S	AKR7L_uc010ocy.1_Missense_Mutation_p.N144S	NM_201252	NP_957704			aflatoxin B1 aldehyde reductase 3 isoform 1												0						GGCGGCATAGTTGGAGAGGCC	0.637													16	23					0	0	0.006122	0	0
EPHA8	2046	broad.mit.edu	37	1	22902951	22902951	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:22902951G>A	uc001bfx.1	+	3	526	c.401G>A	c.(400-402)GGG>GAG	p.G134E	EPHA8_uc001bfw.2_Missense_Mutation_p.G134E	NM_020526	NP_065387	P29322	EPHA8_HUMAN	ephrin receptor EphA8 isoform 1 precursor	134	Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			central_nervous_system(5)|breast(3)|lung(2)|large_intestine(1)|stomach(1)|skin(1)	13		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;7.29e-27)|Colorectal(126;1.61e-07)|COAD - Colon adenocarcinoma(152;1.14e-05)|GBM - Glioblastoma multiforme(114;1.74e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000554)|KIRC - Kidney renal clear cell carcinoma(1967;0.00272)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199)		CGCGACCTGGGGGCCAGCACA	0.587													20	42					0	0	0.008871	0	0
EPHA8	2046	broad.mit.edu	37	1	22913001	22913001	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:22913001C>T	uc001bfx.1	+	4	977	c.852C>T	c.(850-852)GCC>GCT	p.A284A	EPHA8_uc001bfw.2_Silent_p.A284A	NM_020526	NP_065387	P29322	EPHA8_HUMAN	ephrin receptor EphA8 isoform 1 precursor	284	Extracellular (Potential).|Cys-rich.					integral to plasma membrane	ATP binding|ephrin receptor activity			central_nervous_system(5)|breast(3)|lung(2)|large_intestine(1)|stomach(1)|skin(1)	13		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;7.29e-27)|Colorectal(126;1.61e-07)|COAD - Colon adenocarcinoma(152;1.14e-05)|GBM - Glioblastoma multiforme(114;1.74e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000554)|KIRC - Kidney renal clear cell carcinoma(1967;0.00272)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199)		ACAAGTCAGCCCCTGGGGACC	0.677													17	34					0	0	0.006122	0	0
C1QC	714	broad.mit.edu	37	1	22973756	22973756	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:22973756G>A	uc001bgc.3	+	3	321	c.218G>A	c.(217-219)GGG>GAG	p.G73E	C1QC_uc001bga.3_Missense_Mutation_p.G73E|C1QC_uc001bgb.2_Missense_Mutation_p.G73E	NM_172369	NP_758957	P02747	C1QC_HUMAN	complement component 1, q subcomponent, C chain	73	Collagen-like.				complement activation, classical pathway|innate immune response|negative regulation of granulocyte differentiation|negative regulation of macrophage differentiation	collagen					0		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00262)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;6.21e-27)|Colorectal(126;1.5e-07)|COAD - Colon adenocarcinoma(152;1.12e-05)|GBM - Glioblastoma multiforme(114;1.61e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000538)|KIRC - Kidney renal clear cell carcinoma(1967;0.00269)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.196)	Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	GGACCCAAAGGGCAGAAGGGA	0.493													16	25					0	0	0.004990	0	0
EPHB2	2048	broad.mit.edu	37	1	23111267	23111267	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:23111267C>T	uc009vqj.1	+	3	654	c.509C>T	c.(508-510)TCC>TTC	p.S170F	EPHB2_uc001bge.2_Missense_Mutation_p.S170F|EPHB2_uc001bgf.2_Missense_Mutation_p.S170F|EPHB2_uc010odu.1_Missense_Mutation_p.S170F	NM_017449	NP_059145	P29323	EPHB2_HUMAN	ephrin receptor EphB2 isoform 1 precursor	170	Extracellular (Potential).				axon guidance	integral to plasma membrane	ATP binding|transmembrane-ephrin receptor activity			ovary(3)|lung(1)|pancreas(1)	5		Colorectal(325;3.46e-05)|Lung NSC(340;3.7e-05)|all_lung(284;5.45e-05)|Renal(390;0.000228)|Breast(348;0.0027)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0258)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0348)|OV - Ovarian serous cystadenocarcinoma(117;3.67e-26)|Colorectal(126;3.23e-08)|COAD - Colon adenocarcinoma(152;9.32e-07)|GBM - Glioblastoma multiforme(114;2.93e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000606)|KIRC - Kidney renal clear cell carcinoma(1967;0.00371)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.126)|Lung(427;0.153)		GGACCTGTGTCCCGCAGCGGC	0.607									Hereditary_Prostate_Cancer				8	24					0	0	0.003080	0	0
EPHB2	2048	broad.mit.edu	37	1	23191429	23191429	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:23191429G>A	uc009vqj.1	+	5	1172	c.1027G>A	c.(1027-1029)GAG>AAG	p.E343K	EPHB2_uc001bge.2_Missense_Mutation_p.E343K|EPHB2_uc001bgf.2_Missense_Mutation_p.E343K|EPHB2_uc010odu.1_Missense_Mutation_p.E343K|hsa-mir-4253|MI0015860_5'Flank	NM_017449	NP_059145	P29323	EPHB2_HUMAN	ephrin receptor EphB2 isoform 1 precursor	343	Extracellular (Potential).|Fibronectin type-III 1.				axon guidance	integral to plasma membrane	ATP binding|transmembrane-ephrin receptor activity			ovary(3)|lung(1)|pancreas(1)	5		Colorectal(325;3.46e-05)|Lung NSC(340;3.7e-05)|all_lung(284;5.45e-05)|Renal(390;0.000228)|Breast(348;0.0027)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0258)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0348)|OV - Ovarian serous cystadenocarcinoma(117;3.67e-26)|Colorectal(126;3.23e-08)|COAD - Colon adenocarcinoma(152;9.32e-07)|GBM - Glioblastoma multiforme(114;2.93e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000606)|KIRC - Kidney renal clear cell carcinoma(1967;0.00371)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.126)|Lung(427;0.153)		CCTCATGCTGGAGTGGACCCC	0.677									Hereditary_Prostate_Cancer				38	92					0	0	0.009718	0	0
HTR1D	3352	broad.mit.edu	37	1	23520171	23520171	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:23520171G>A	uc001bgn.2	-	1	1052	c.542C>T	c.(541-543)GCC>GTC	p.A181V		NM_000864	NP_000855	P28221	5HT1D_HUMAN	5-hydroxytryptamine (serotonin) receptor 1D	181	Extracellular (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|intestine smooth muscle contraction|synaptic transmission	integral to plasma membrane	serotonin receptor activity				0		Colorectal(325;0.000147)|Renal(390;0.000734)|Lung NSC(340;0.000779)|all_lung(284;0.00135)|Breast(348;0.0385)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0561)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;4.69e-27)|Colorectal(126;4.86e-08)|COAD - Colon adenocarcinoma(152;2.86e-06)|GBM - Glioblastoma multiforme(114;0.00012)|BRCA - Breast invasive adenocarcinoma(304;0.000949)|KIRC - Kidney renal clear cell carcinoma(1967;0.00122)|STAD - Stomach adenocarcinoma(196;0.0123)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.083)|LUSC - Lung squamous cell carcinoma(448;0.185)	Almotriptan(DB00918)|Dihydroergotamine(DB00320)|Eletriptan(DB00216)|Ergotamine(DB00696)|Frovatriptan(DB00998)|Naratriptan(DB00952)|Rizatriptan(DB00953)|Sumatriptan(DB00669)|Tegaserod(DB01079)|Ziprasidone(DB00246)|Zolmitriptan(DB00315)	CTCCTCCTGGGCCTTGGCCTG	0.602													20	45					0	0	0.012319	0	0
HTR1D	3352	broad.mit.edu	37	1	23520476	23520476	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:23520476G>A	uc001bgn.2	-	1	747	c.237C>T	c.(235-237)TCC>TCT	p.S79S		NM_000864	NP_000855	P28221	5HT1D_HUMAN	5-hydroxytryptamine (serotonin) receptor 1D	79	Helical; Name=2; (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|intestine smooth muscle contraction|synaptic transmission	integral to plasma membrane	serotonin receptor activity				0		Colorectal(325;0.000147)|Renal(390;0.000734)|Lung NSC(340;0.000779)|all_lung(284;0.00135)|Breast(348;0.0385)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0561)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;4.69e-27)|Colorectal(126;4.86e-08)|COAD - Colon adenocarcinoma(152;2.86e-06)|GBM - Glioblastoma multiforme(114;0.00012)|BRCA - Breast invasive adenocarcinoma(304;0.000949)|KIRC - Kidney renal clear cell carcinoma(1967;0.00122)|STAD - Stomach adenocarcinoma(196;0.0123)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.083)|LUSC - Lung squamous cell carcinoma(448;0.185)	Almotriptan(DB00918)|Dihydroergotamine(DB00320)|Eletriptan(DB00216)|Ergotamine(DB00696)|Frovatriptan(DB00998)|Naratriptan(DB00952)|Rizatriptan(DB00953)|Sumatriptan(DB00669)|Tegaserod(DB01079)|Ziprasidone(DB00246)|Zolmitriptan(DB00315)	TGGTGGCCAGGGAGCCAATCA	0.537													52	123					0	0	0.014410	0	0
RHCE	6006	broad.mit.edu	37	1	25712324	25712324	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:25712324G>A	uc001bkf.2	-	7	1037	c.951C>T	c.(949-951)AAC>AAT	p.N317N	RHCE_uc001bkg.2_Intron|RHCE_uc001bkh.2_Silent_p.N212N|RHCE_uc001bki.2_Silent_p.N166N|RHCE_uc001bkj.2_Silent_p.N301N	NM_020485	NP_065231	P18577	RHCE_HUMAN	Rhesus blood group, CcEe antigens isoform 1	317						integral to plasma membrane					0		Colorectal(325;3.46e-05)|Lung NSC(340;0.000245)|all_lung(284;0.000335)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0101)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0936)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0426)|OV - Ovarian serous cystadenocarcinoma(117;2.12e-27)|Colorectal(126;3.16e-08)|COAD - Colon adenocarcinoma(152;1.72e-06)|STAD - Stomach adenocarcinoma(196;0.00035)|KIRC - Kidney renal clear cell carcinoma(1967;0.000769)|BRCA - Breast invasive adenocarcinoma(304;0.00101)|GBM - Glioblastoma multiforme(114;0.00458)|READ - Rectum adenocarcinoma(331;0.0649)		CCAGCACTCGGTTACAACACA	0.517													42	86					0	0	0.011902	0	0
TMEM57	55219	broad.mit.edu	37	1	25784985	25784986	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:25784985_25784986CC>TT	uc001bkk.2	+	6	958_959	c.756_757CC>TT	c.(754-759)TACCGA>TATTGA	p.R253*	TMEM57_uc009vru.2_Intron|TMEM57_uc009vrv.2_Intron|TMEM57_uc009vrt.2_RNA	NM_018202	NP_060672	Q8N5G2	MACOI_HUMAN	transmembrane protein 57	253						axon|integral to membrane|neuron projection terminus|nuclear membrane|synapse part					0		Colorectal(325;0.000147)|Renal(390;0.00211)|Lung NSC(340;0.00715)|all_lung(284;0.00989)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.051)|Breast(348;0.0675)|all_neural(195;0.201)		UCEC - Uterine corpus endometrioid carcinoma (279;0.042)|OV - Ovarian serous cystadenocarcinoma(117;1.85e-26)|Colorectal(126;2.99e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.000751)|STAD - Stomach adenocarcinoma(196;0.000766)|BRCA - Breast invasive adenocarcinoma(304;0.000986)|GBM - Glioblastoma multiforme(114;0.0191)|READ - Rectum adenocarcinoma(331;0.0649)		AGATAGAATACCGAGAAAAAGG	0.376													40	59					0	0	0.004672	0	0
CATSPER4	378807	broad.mit.edu	37	1	26524783	26524783	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:26524783T>C	uc010oez.1	+	6	685	c.685T>C	c.(685-687)TCC>CCC	p.S229P	CATSPER4_uc010oey.1_Missense_Mutation_p.S51P|CATSPER4_uc009vsf.2_Intron	NM_198137	NP_937770	Q7RTX7	CTSR4_HUMAN	cation channel, sperm associated 4	229	Helical; Name=Segment S5; (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	cilium|flagellar membrane|integral to membrane	calcium channel activity|voltage-gated ion channel activity			ovary(1)	1		all_cancers(24;2.05e-18)|Colorectal(325;0.000147)|Renal(390;0.00211)|all_lung(284;0.00218)|Lung NSC(340;0.00239)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.051)|Breast(348;0.0589)|all_neural(195;0.0687)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;3.52e-26)|Colorectal(126;1.34e-08)|COAD - Colon adenocarcinoma(152;9.31e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.000755)|BRCA - Breast invasive adenocarcinoma(304;0.000995)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.00878)|READ - Rectum adenocarcinoma(331;0.0649)		ACAGGTTTTTTCCGTGTTTGG	0.493													134	269					0	0	0.014410	0	0
CATSPER4	378807	broad.mit.edu	37	1	26526468	26526468	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:26526468C>T	uc010oez.1	+	7	906	c.906C>T	c.(904-906)TTC>TTT	p.F302F	CATSPER4_uc010oey.1_Silent_p.F124F|CATSPER4_uc009vsf.2_RNA	NM_198137	NP_937770	Q7RTX7	CTSR4_HUMAN	cation channel, sperm associated 4	302	Helical; Name=Segment S6; (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	cilium|flagellar membrane|integral to membrane	calcium channel activity|voltage-gated ion channel activity			ovary(1)	1		all_cancers(24;2.05e-18)|Colorectal(325;0.000147)|Renal(390;0.00211)|all_lung(284;0.00218)|Lung NSC(340;0.00239)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.051)|Breast(348;0.0589)|all_neural(195;0.0687)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;3.52e-26)|Colorectal(126;1.34e-08)|COAD - Colon adenocarcinoma(152;9.31e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.000755)|BRCA - Breast invasive adenocarcinoma(304;0.000995)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.00878)|READ - Rectum adenocarcinoma(331;0.0649)		TCAACCTGTTCGTCATCGTGG	0.517													12	20					0	0	0.010729	0	0
SLC9A1	6548	broad.mit.edu	37	1	27436209	27436209	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:27436209G>A	uc001bnm.2	-	3	1499	c.873C>T	c.(871-873)ATC>ATT	p.I291I	SLC9A1_uc010ofk.1_5'UTR|SLC9A1_uc001bnn.2_Silent_p.I291I	NM_003047	NP_003038	P19634	SL9A1_HUMAN	solute carrier family 9, isoform A1	291	Extracellular (Potential).				regulation of pH	integral to membrane	sodium:hydrogen antiporter activity			ovary(1)|central_nervous_system(1)	2				UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Epithelial(14;2.19e-50)|OV - Ovarian serous cystadenocarcinoma(117;1.8e-29)|Colorectal(126;7.61e-09)|COAD - Colon adenocarcinoma(152;9.32e-07)|BRCA - Breast invasive adenocarcinoma(304;0.000521)|KIRC - Kidney renal clear cell carcinoma(1967;0.00079)|STAD - Stomach adenocarcinoma(196;0.00125)|READ - Rectum adenocarcinoma(331;0.046)	Amiloride(DB00594)	AGCCGAGGAAGATGTCCACGA	0.622													34	73					0	0	0.003755	0	0
MAP3K6	9064	broad.mit.edu	37	1	27689240	27689240	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:27689240G>A	uc001bny.1	-	8	1396	c.1147C>T	c.(1147-1149)CGC>TGC	p.R383C	MAP3K6_uc009vsw.1_Missense_Mutation_p.R375C|MAP3K6_uc001bnz.1_5'Flank	NM_004672	NP_004663	O95382	M3K6_HUMAN	mitogen-activated protein kinase kinase kinase	383					activation of JUN kinase activity		ATP binding|magnesium ion binding|MAP kinase kinase kinase activity			breast(4)|lung(3)|ovary(1)|central_nervous_system(1)	9		all_lung(284;1.6e-05)|Lung NSC(340;2.92e-05)|Colorectal(325;3.46e-05)|Renal(390;0.0007)|Breast(348;0.0021)|Ovarian(437;0.0175)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0416)|OV - Ovarian serous cystadenocarcinoma(117;1.69e-27)|Colorectal(126;1.24e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00132)|KIRC - Kidney renal clear cell carcinoma(1967;0.00163)|STAD - Stomach adenocarcinoma(196;0.00303)|READ - Rectum adenocarcinoma(331;0.0419)		AAAGCCTTGCGATACCTGGGG	0.592													9	24					0	0	0.006214	0	0
PTAFR	5724	broad.mit.edu	37	1	28476731	28476731	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:28476731G>A	uc001bpl.2	-	2	929	c.802C>T	c.(802-804)CAC>TAC	p.H268Y	PTAFR_uc001bpm.3_Missense_Mutation_p.H268Y|PTAFR_uc009vte.2_Missense_Mutation_p.H268Y	NM_000952	NP_000943	P25105	PTAFR_HUMAN	platelet-activating factor receptor	268	Extracellular (Potential).				chemotaxis|inflammatory response|interferon-gamma-mediated signaling pathway|phosphatidylinositol-mediated signaling	integral to plasma membrane|nucleus	phospholipid binding|platelet activating factor receptor activity				0		Colorectal(325;0.000147)|Renal(390;0.00357)|Lung NSC(340;0.00715)|all_lung(284;0.00732)|Breast(348;0.0174)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0545)|all_neural(195;0.0557)		UCEC - Uterine corpus endometrioid carcinoma (279;0.215)|OV - Ovarian serous cystadenocarcinoma(117;6e-22)|Colorectal(126;3.04e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.00279)|BRCA - Breast invasive adenocarcinoma(304;0.00595)|STAD - Stomach adenocarcinoma(196;0.00678)|READ - Rectum adenocarcinoma(331;0.0649)		ATGGCCTGGTGGAATTTGCTG	0.552													18	34					0	0	0.006122	0	0
PHACTR4	65979	broad.mit.edu	37	1	28785613	28785614	+	Missense_Mutation	DNP	AC	CT	CT			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:28785613_28785614AC>CT	uc001bpw.2	+	3	316_317	c.34_35AC>CT	c.(34-36)ACT>CTT	p.T12L	PHACTR4_uc001bpu.2_Missense_Mutation_p.T12L|PHACTR4_uc001bpv.1_RNA|PHACTR4_uc001bpx.2_5'UTR|PHACTR4_uc001bpy.2_Missense_Mutation_p.T22L	NM_001048183	NP_001041648	Q8IZ21	PHAR4_HUMAN	phosphatase and actin regulator 4 isoform 1	12							actin binding|protein phosphatase inhibitor activity				0		Colorectal(325;3.46e-05)|Lung NSC(340;4.37e-05)|all_lung(284;7.01e-05)|Renal(390;0.00121)|Breast(348;0.00345)|all_neural(195;0.0208)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0261)		OV - Ovarian serous cystadenocarcinoma(117;1.35e-21)|Colorectal(126;2.96e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.00273)|STAD - Stomach adenocarcinoma(196;0.00299)|BRCA - Breast invasive adenocarcinoma(304;0.0144)|READ - Rectum adenocarcinoma(331;0.0649)		AGACCAGCCCACTACAGAGCCA	0.47													8	34					0	0	0.004672	0	0
PTPRU	10076	broad.mit.edu	37	1	29606570	29606570	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:29606570C>T	uc001bru.2	+	11	1895	c.1785C>T	c.(1783-1785)GCC>GCT	p.A595A	PTPRU_uc001brv.2_Silent_p.A595A|PTPRU_uc001brw.2_Silent_p.A595A|PTPRU_uc009vtq.2_Silent_p.A595A|PTPRU_uc009vtr.2_Silent_p.A595A	NM_005704	NP_005695	Q92729	PTPRU_HUMAN	protein tyrosine phosphatase, receptor type, U	595	Extracellular (Potential).|Fibronectin type-III 4.				canonical Wnt receptor signaling pathway|cell differentiation|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transmembrane receptor protein tyrosine phosphatase signaling pathway	cell-cell junction|integral to plasma membrane	beta-catenin binding|transmembrane receptor protein tyrosine phosphatase activity			large_intestine(3)|ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	7		Colorectal(325;0.000399)|Lung NSC(340;0.00953)|all_lung(284;0.0112)|Breast(348;0.0126)|all_neural(195;0.0199)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0563)|Medulloblastoma(700;0.123)		Colorectal(126;6.99e-07)|COAD - Colon adenocarcinoma(152;3.18e-05)|STAD - Stomach adenocarcinoma(196;0.0234)|READ - Rectum adenocarcinoma(331;0.0686)|BRCA - Breast invasive adenocarcinoma(304;0.0871)		TTGATTATGCCGACATGCCGT	0.637													21	44					0	0	0.004656	0	0
DCDC2B	149069	broad.mit.edu	37	1	32678136	32678136	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:32678136G>A	uc001bun.2	+	5	573	c.573G>A	c.(571-573)CTG>CTA	p.L191L		NM_001099434	NP_001092904	A2VCK2	DCD2B_HUMAN	doublecortin domain containing 2B	191	Doublecortin 2.				intracellular signal transduction						0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Ovarian(437;0.101)|Breast(348;0.174)				GGAAGGAGCTGGTAACTGGCC	0.587													33	45					0	0	0.012213	0	0
LCK	3932	broad.mit.edu	37	1	32739964	32739964	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:32739964G>A	uc001bux.2	+	2	172	c.34G>A	c.(34-36)GAC>AAC	p.D12N	LCK_uc001buy.2_Missense_Mutation_p.D12N|LCK_uc001buz.2_Missense_Mutation_p.D12N|LCK_uc010ohc.1_Missense_Mutation_p.D56N|LCK_uc001bva.2_Missense_Mutation_p.D12N	NM_005356	NP_005347	P06239	LCK_HUMAN	lymphocyte-specific protein tyrosine kinase	12	Interactions with CD4 and CD8 (By similarity).				activation of caspase activity|cellular zinc ion homeostasis|induction of apoptosis|interspecies interaction between organisms|leukocyte migration|platelet activation|positive regulation of T cell receptor signaling pathway|regulation of defense response to virus by virus|release of sequestered calcium ion into cytosol|response to drug|T cell costimulation|T cell differentiation|T cell receptor signaling pathway|viral reproduction	cytosol|Golgi apparatus|membrane raft|pericentriolar material|plasma membrane	ATP binding|ATPase binding|CD4 receptor binding|CD8 receptor binding|glycoprotein binding|non-membrane spanning protein tyrosine kinase activity|phosphatidylinositol 3-kinase binding|protein C-terminus binding|protein kinase binding|protein serine/threonine phosphatase activity|SH2 domain binding			lung(3)|central_nervous_system(2)|ovary(1)	6		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Ovarian(437;0.101)|Breast(348;0.212)			Dasatinib(DB01254)	CCCGGAAGATGACTGGATGGA	0.577			T	TRB@	T-ALL								34	54					0	0	0.004878	0	0
ZBTB8A	653121	broad.mit.edu	37	1	33058852	33058852	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:33058852T>C	uc001bvn.2	+	3	805	c.320T>C	c.(319-321)ATG>ACG	p.M107T	ZBTB8A_uc001bvk.2_RNA|ZBTB8A_uc001bvm.2_Missense_Mutation_p.M107T	NM_001040441	NP_001035531	Q96BR9	ZBT8A_HUMAN	zinc finger and BTB domain containing 8A	107					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TTCCTTCAGATGACTGATGTC	0.373													36	77					0	0	0.003755	0	0
S100PBP	64766	broad.mit.edu	37	1	33321617	33321617	+	Missense_Mutation	SNP	T	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:33321617T>G	uc001bvz.2	+	7	1482	c.1205T>G	c.(1204-1206)CTC>CGC	p.L402R	S100PBP_uc001bwc.2_Missense_Mutation_p.L402R|S100PBP_uc001bwd.2_RNA	NM_022753	NP_073590	Q96BU1	S1PBP_HUMAN	S100P binding protein isoform a	402						nucleus	calcium-dependent protein binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Breast(348;0.244)				TTCCAGCGTCTCCCAGACTTC	0.493													13	31					0	0	0.002450	0	0
RNF19B	127544	broad.mit.edu	37	1	33404090	33404090	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:33404090G>A	uc010oho.1	-	8	1653	c.1653C>T	c.(1651-1653)CCC>CCT	p.P551P	RNF19B_uc001bwm.3_Silent_p.P550P|RNF19B_uc010ohp.1_Silent_p.P550P	NM_153341	NP_699172	Q6ZMZ0	RN19B_HUMAN	ring finger protein 19B isoform a	551						integral to membrane	ligase activity|protein binding|zinc ion binding				0		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.186)				CTGTGTCTTTGGGGAAAATTT	0.463													18	94					0	0	0.008871	0	0
CSMD2	114784	broad.mit.edu	37	1	34008417	34008417	+	Silent	SNP	G	A	A	rs138523089	byFrequency	TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:34008417G>A	uc001bxn.1	-	57	8777	c.8748C>T	c.(8746-8748)ATC>ATT	p.I2916I	CSMD2_uc001bxm.1_Silent_p.I3060I	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	2916	Sushi 21.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				ACTCATAGACGATAGAGCTGG	0.542													19	30					0	0	0.012319	0	0
CSMD2	114784	broad.mit.edu	37	1	34189909	34189909	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:34189909G>A	uc001bxn.1	-	19	2798	c.2769C>T	c.(2767-2769)CTC>CTT	p.L923L	CSMD2_uc001bxm.1_Silent_p.L963L	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	923	Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				AGCCACCACAGAGAGCTACAG	0.562													4	28					0	0	0.009096	0	0
CSMD2	114784	broad.mit.edu	37	1	34312485	34312485	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:34312485C>T	uc001bxn.1	-	6	942	c.913G>A	c.(913-915)GTC>ATC	p.V305I	CSMD2_uc001bxm.1_Missense_Mutation_p.V345I	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	305	CUB 2.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				ACCTGCCTACCTTGGTATTGG	0.612													14	44					0	0	0.003163	0	0
HMGB4	127540	broad.mit.edu	37	1	34330148	34330148	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:34330148C>T	uc001bxp.2	+	2	2099	c.356C>T	c.(355-357)TCG>TTG	p.S119L	CSMD2_uc001bxm.1_Intron|CSMD2_uc001bxn.1_Intron|HMGB4_uc001bxq.2_Missense_Mutation_p.S45L	NM_145205	NP_660206	Q8WW32	HMGB4_HUMAN	HMG2 like isoform 1	119						nucleus	DNA binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.211)				CCGAACTGGTCGGTGGTGCAG	0.567													32	42					0	0	0.010818	0	0
CSMD2	114784	broad.mit.edu	37	1	34401488	34401488	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:34401488G>A	uc001bxn.1	-	4	494	c.465C>T	c.(463-465)TTC>TTT	p.F155F	CSMD2_uc001bxm.1_Silent_p.F195F	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	155	Sushi 1.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				CACCGAGGTTGAAGGTTGAAC	0.602													37	78					0	0	0.009718	0	0
GJB5	2709	broad.mit.edu	37	1	35223146	35223146	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:35223146C>T	uc001bxu.2	+	2	315	c.215C>T	c.(214-216)TCC>TTC	p.S72F	GJB4_uc001bxv.1_5'Flank	NM_005268	NP_005259	O95377	CXB5_HUMAN	gap junction protein, beta 5, 31.1kDa	72	Extracellular (Potential).				cell communication|epidermis development	connexon complex|integral to membrane				ovary(1)	1		Myeloproliferative disorder(586;0.0393)				TTCCCTGTGTCCCATGTGCGC	0.602													7	60					0	0	0.004482	0	0
GJB5	2709	broad.mit.edu	37	1	35223590	35223590	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:35223590G>A	uc001bxu.2	+	2	759	c.659G>A	c.(658-660)AGG>AAG	p.R220K	GJB4_uc001bxv.1_5'Flank	NM_005268	NP_005259	O95377	CXB5_HUMAN	gap junction protein, beta 5, 31.1kDa	220	Cytoplasmic (Potential).				cell communication|epidermis development	connexon complex|integral to membrane				ovary(1)	1		Myeloproliferative disorder(586;0.0393)				CTGGCAGCAAGGAAAGCTCAA	0.567													10	52					0	0	0.008291	0	0
EIF2C1	26523	broad.mit.edu	37	1	36379862	36379862	+	Missense_Mutation	SNP	C	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:36379862C>A	uc001bzl.2	+	14	2033	c.1820C>A	c.(1819-1821)CCT>CAT	p.P607H	EIF2C1_uc001bzk.2_Missense_Mutation_p.P532H|EIF2C1_uc009vuy.2_RNA	NM_012199	NP_036331	Q9UL18	AGO1_HUMAN	eukaryotic translation initiation factor 2C, 1	607	Piwi.				negative regulation of translation involved in gene silencing by miRNA|nuclear-transcribed mRNA catabolic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol|micro-ribonucleoprotein complex|polysome	protein binding|RNA binding			ovary(2)|skin(1)	3		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				GGGAAAAAACCTTCTATCACA	0.483													23	42					3.83957e-06	4.11152e-06	0.002780	1	0
MAP7D1	55700	broad.mit.edu	37	1	36645561	36645561	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:36645561G>A	uc001bzz.2	+	16	2624	c.2408G>A	c.(2407-2409)GGA>GAA	p.G803E	MAP7D1_uc001caa.2_Missense_Mutation_p.G770E|MAP7D1_uc001cab.2_Missense_Mutation_p.G765E|MAP7D1_uc001cac.2_Missense_Mutation_p.G502E|MAP7D1_uc001cad.2_Missense_Mutation_p.G339E	NM_018067	NP_060537	Q3KQU3	MA7D1_HUMAN	MAP7 domain containing 1	803						cytoplasm|spindle				ovary(3)|breast(2)	5		Myeloproliferative disorder(586;0.0393)				TCCACCAACGGACCCTCTGGG	0.597													14	26					0	0	0.004007	0	0
GRIK3	2899	broad.mit.edu	37	1	37270698	37270698	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:37270698G>A	uc001caz.2	-	15	2590	c.2455C>T	c.(2455-2457)CAG>TAG	p.Q819*	GRIK3_uc001cba.1_Nonsense_Mutation_p.Q819*	NM_000831	NP_000822	Q13003	GRIK3_HUMAN	glutamate receptor, ionotropic, kainate 3	819	Extracellular (Potential).				negative regulation of synaptic transmission, glutamatergic|regulation of membrane potential|synaptic transmission	cell junction|dendrite cytoplasm|integral to plasma membrane|perikaryon|postsynaptic membrane|terminal button	adenylate cyclase inhibiting metabotropic glutamate receptor activity|extracellular-glutamate-gated ion channel activity|G-protein-coupled receptor binding|kainate selective glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)|breast(1)	7		Myeloproliferative disorder(586;0.0258)|all_neural(195;0.169)			L-Glutamic Acid(DB00142)	CCGATCTTCTGGATCCCCAGG	0.597													18	78					0	0	0.012319	0	0
GRIK3	2899	broad.mit.edu	37	1	37285336	37285336	+	Splice_Site	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:37285336C>T	uc001caz.2	-	12	2008	c.1873_splice	c.e12+1	p.G625_splice	GRIK3_uc001cba.1_Splice_Site_p.G625_splice	NM_000831	NP_000822	Q13003	GRIK3_HUMAN	glutamate receptor, ionotropic, kainate 3						negative regulation of synaptic transmission, glutamatergic|regulation of membrane potential|synaptic transmission	cell junction|dendrite cytoplasm|integral to plasma membrane|perikaryon|postsynaptic membrane|terminal button	adenylate cyclase inhibiting metabotropic glutamate receptor activity|extracellular-glutamate-gated ion channel activity|G-protein-coupled receptor binding|kainate selective glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)|breast(1)	7		Myeloproliferative disorder(586;0.0258)|all_neural(195;0.169)			L-Glutamic Acid(DB00142)	AGGGTGCATACCTTGCTGCAT	0.572													7	20					0	0	0.004482	0	0
GRIK3	2899	broad.mit.edu	37	1	37337848	37337848	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:37337848G>A	uc001caz.2	-	4	808	c.673C>T	c.(673-675)CGG>TGG	p.R225W	GRIK3_uc001cba.1_Missense_Mutation_p.R225W	NM_000831	NP_000822	Q13003	GRIK3_HUMAN	glutamate receptor, ionotropic, kainate 3	225	Extracellular (Potential).				negative regulation of synaptic transmission, glutamatergic|regulation of membrane potential|synaptic transmission	cell junction|dendrite cytoplasm|integral to plasma membrane|perikaryon|postsynaptic membrane|terminal button	adenylate cyclase inhibiting metabotropic glutamate receptor activity|extracellular-glutamate-gated ion channel activity|G-protein-coupled receptor binding|kainate selective glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)|breast(1)	7		Myeloproliferative disorder(586;0.0258)|all_neural(195;0.169)			L-Glutamic Acid(DB00142)	CGGAATTCCCGGCCTCGCTTC	0.592													16	31					0	0	0.004990	0	0
SNIP1	79753	broad.mit.edu	37	1	38005955	38005955	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:38005955G>A	uc001cbi.2	-	3	802	c.729C>T	c.(727-729)GTC>GTT	p.V243V	SNIP1_uc010oid.1_RNA	NM_024700	NP_078976	Q8TAD8	SNIP1_HUMAN	Smad nuclear interacting protein	243					production of miRNAs involved in gene silencing by miRNA	nucleus	protein binding			upper_aerodigestive_tract(1)|lung(1)	2		Myeloproliferative disorder(586;0.0393)				TATATTTAATGACTACACCCC	0.453													21	47					0	0	0.014323	0	0
GNL2	29889	broad.mit.edu	37	1	38039990	38039990	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:38039990G>A	uc001cbk.2	-	12	1533	c.1370C>T	c.(1369-1371)CCT>CTT	p.P457L		NM_013285	NP_037417	Q13823	NOG2_HUMAN	guanine nucleotide binding protein-like 2	457					ribosome biogenesis	nucleolus	GTP binding|GTPase activity|protein binding			ovary(1)|central_nervous_system(1)	2		Myeloproliferative disorder(586;0.0393)				GACAAAGAAAGGAATCCGGCC	0.552													5	30					0	0	0.001168	0	0
EPHA10	284656	broad.mit.edu	37	1	38185154	38185154	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:38185154G>A	uc009vvi.2	-	15	2774	c.2688C>T	c.(2686-2688)ATC>ATT	p.I896I	EPHA10_uc001cbt.2_Intron|EPHA10_uc009vvh.1_Intron|EPHA10_uc001cbu.2_Intron|EPHA10_uc001cbv.1_RNA	NM_001099439	NP_001092909	Q5JZY3	EPHAA_HUMAN	EPH receptor A10 isofom 3	896	Cytoplasmic (Potential).|Protein kinase.					extracellular region|integral to membrane|integral to plasma membrane	ATP binding|ephrin receptor activity|protein binding|transmembrane-ephrin receptor activity			breast(4)|stomach(3)|lung(1)	8	Acute lymphoblastic leukemia(166;0.074)|all_hematologic(146;0.197)	Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				GGATGCTGTGGATCTGGGAGA	0.617													29	43					0	0	0.003271	0	0
MACF1	23499	broad.mit.edu	37	1	39799709	39799709	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:39799709C>T	uc010oiu.1	+	1	2900	c.2769C>T	c.(2767-2769)TCC>TCT	p.S923S	MACF1_uc010ois.1_Intron|MACF1_uc001cda.1_Intron|MACF1_uc001cdc.1_Intron|MACF1_uc001cdb.1_Intron	NM_033044	NP_149033	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	2488					cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			TTGTGCAGTCCATTGACAGAG	0.403													68	129					0	0	0.014410	0	0
MACF1	23499	broad.mit.edu	37	1	39852864	39852864	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:39852864C>T	uc010oiu.1	+	22	9801	c.9670C>T	c.(9670-9672)CGC>TGC	p.R3224C	MACF1_uc010ois.1_Missense_Mutation_p.R2722C|MACF1_uc001cda.1_Missense_Mutation_p.R2609C|MACF1_uc001cdc.1_Missense_Mutation_p.R1788C	NM_033044	NP_149033	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	4789	LRR 18.				cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			TTCAGCCGATCGCATTAACAG	0.443													60	122					0	0	0.014410	0	0
KIAA0754	643314	broad.mit.edu	37	1	39878858	39878858	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:39878858C>T	uc009vvt.1	+	1	3683	c.2921C>T	c.(2920-2922)CCT>CTT	p.P974L	MACF1_uc010ois.1_Intron|MACF1_uc001cda.1_Intron|MACF1_uc001cdc.1_Intron|MACF1_uc010oiu.1_Intron	NM_015038	NP_055853	O94854	K0754_HUMAN	hypothetical protein LOC643314	838	Ala-rich.										0	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0393)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			CCAGAAGGGCCTGTCACCCCA	0.592													4	10					0	0	0.009096	0	0
HEYL	26508	broad.mit.edu	37	1	40097243	40097243	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:40097243C>T	uc001cdp.2	-	3	207	c.156G>A	c.(154-156)GAG>GAA	p.E52E	HEYL_uc010oiw.1_Silent_p.E24E	NM_014571	NP_055386	Q9NQ87	HEYL_HUMAN	hairy/enhancer-of-split related with YRPW	52	Transcriptional repression and interaction with NCOR1 and SIN3A (By similarity).|Basic motif.				multicellular organismal development|Notch signaling pathway|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1	Lung NSC(20;3.81e-06)|Ovarian(52;0.00769)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;1.1e-18)|Epithelial(16;2.77e-17)|all cancers(16;5.64e-16)|LUSC - Lung squamous cell carcinoma(16;0.000261)|Lung(16;0.000457)			GACGCCGTTTCTCTATGATCT	0.338													18	29					0	0	0.010504	0	0
DEM1	64789	broad.mit.edu	37	1	40980261	40980261	+	Silent	SNP	A	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:40980261A>G	uc001cfp.2	+	3	250	c.45A>G	c.(43-45)TCA>TCG	p.S15S	DEM1_uc001cfq.2_Silent_p.S15S|DEM1_uc001cfr.2_Silent_p.S15S|DEM1_uc001cfs.2_Silent_p.S15S	NM_022774	NP_073611	Q9H790	EXO5_HUMAN	defects in morphology 1 homolog	15							DNA binding|exonuclease activity				0						CAGAAGCCTCAGGGTTCTCAG	0.488													30	79					0	0	0.013726	0	0
KCNQ4	9132	broad.mit.edu	37	1	41283836	41283836	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:41283836G>A	uc001cgh.1	+	3	488	c.406G>A	c.(406-408)GAA>AAA	p.E136K	KCNQ4_uc001cgi.1_Missense_Mutation_p.E136K	NM_004700	NP_004691	P56696	KCNQ4_HUMAN	potassium voltage-gated channel KQT-like protein	136	Helical; Name=Segment S2; (Potential).				sensory perception of sound	basal plasma membrane|voltage-gated potassium channel complex				central_nervous_system(1)	1	Ovarian(52;0.00769)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;1.38e-17)			GGTCCCACAGGAATTCGTGAT	0.632													17	77					0	0	0.004990	0	0
KCNQ4	9132	broad.mit.edu	37	1	41303367	41303367	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:41303367G>A	uc001cgh.1	+	13	1858	c.1776G>A	c.(1774-1776)GGG>GGA	p.G592G	KCNQ4_uc001cgi.1_Silent_p.G538G	NM_004700	NP_004691	P56696	KCNQ4_HUMAN	potassium voltage-gated channel KQT-like protein	592	Cytoplasmic.|A-domain (Tetramerization).				sensory perception of sound	basal plasma membrane|voltage-gated potassium channel complex				central_nervous_system(1)	1	Ovarian(52;0.00769)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;1.38e-17)			GGGGGCCCGGGGACAGGAAGG	0.627													8	32					0	0	0.004482	0	0
HIVEP3	59269	broad.mit.edu	37	1	41978682	41978682	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:41978682C>T	uc001cgz.3	-	8	7423	c.6210G>A	c.(6208-6210)AGG>AGA	p.R2070R	HIVEP3_uc001cha.3_Silent_p.R2070R|HIVEP3_uc001cgy.2_RNA	NM_024503	NP_078779	Q5T1R4	ZEP3_HUMAN	human immunodeficiency virus type I enhancer	2070	5.|6 X 4 AA tandem repeats of S-P-X-[RK].				positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6	Ovarian(52;0.00769)|all_hematologic(146;0.109)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0367)				GAGACCATCTCCTGGTGGGCG	0.687													23	21					0	0	0.002780	0	0
HIVEP3	59269	broad.mit.edu	37	1	42047200	42047200	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:42047200G>A	uc001cgz.3	-	4	4482	c.3269C>T	c.(3268-3270)TCT>TTT	p.S1090F	HIVEP3_uc001cha.3_Missense_Mutation_p.S1090F|HIVEP3_uc001cgy.2_RNA	NM_024503	NP_078779	Q5T1R4	ZEP3_HUMAN	human immunodeficiency virus type I enhancer	1090					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6	Ovarian(52;0.00769)|all_hematologic(146;0.109)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0367)				GGTGGCCGCAGAGGAAATCTG	0.607													7	66					0	0	0.001984	0	0
RIMKLA	284716	broad.mit.edu	37	1	42880390	42880390	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:42880390G>A	uc001chi.2	+	5	1059	c.921G>A	c.(919-921)CAG>CAA	p.Q307Q		NM_173642	NP_775913	Q8IXN7	RIMKA_HUMAN	ribosomal modification protein rimK-like family	307					protein modification process	cytoplasm	acid-amino acid ligase activity|ATP binding|metal ion binding				0						CAAATAGGCAGACTGGAAAGA	0.517													40	57					0	0	0.007835	0	0
ZMYND12	84217	broad.mit.edu	37	1	42905641	42905641	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:42905641G>A	uc001chj.2	-	4	750	c.480C>T	c.(478-480)GTC>GTT	p.V160V	ZMYND12_uc010ojt.1_Silent_p.V50V	NM_032257	NP_115633	Q9H0C1	ZMY12_HUMAN	zinc finger, MYND-type containing 12 isoform 1	160						intracellular	zinc ion binding			ovary(1)	1	Ovarian(52;0.00744)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				TTGATTTGAGGACTGTCCACT	0.443													21	112					0	0	0.003330	0	0
MPL	4352	broad.mit.edu	37	1	43812583	43812583	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:43812583G>A	uc001ciw.2	+	8	1331	c.1286G>A	c.(1285-1287)GGA>GAA	p.G429E	MPL_uc001civ.2_Missense_Mutation_p.G429E|MPL_uc009vwr.2_Missense_Mutation_p.G422E	NM_005373	NP_005364	P40238	TPOR_HUMAN	myeloproliferative leukemia virus oncogene	429	Fibronectin type-III 2.|Extracellular (Potential).				cell proliferation|platelet activation	integral to plasma membrane	cytokine receptor activity			haematopoietic_and_lymphoid_tissue(361)|upper_aerodigestive_tract(1)|pancreas(1)	363	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				CGATACACAGGAGAAGGCCAT	0.562			Mis		MPD	MPD	congenital amegakaryocytic thrombocytopenia						22	43					0	0	0.014323	0	0
KIAA0467	23334	broad.mit.edu	37	1	43881724	43881724	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:43881724C>T	uc009vws.1	+	6	808	c.724C>T	c.(724-726)CGT>TGT	p.R242C				Q5T011	SZT2_HUMAN	Homo sapiens mRNA for KIAA0467 protein, partial cds.	242						peroxisome					0	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				CAGTATGATTCGTCAGGGCAT	0.567													6	23					0	0	0.003080	0	0
PTPRF	5792	broad.mit.edu	37	1	44072119	44072119	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:44072119C>T	uc001cjr.2	+	20	4032	c.3692C>T	c.(3691-3693)CCC>CTC	p.P1231L	PTPRF_uc001cjs.2_Missense_Mutation_p.P1222L|PTPRF_uc001cju.2_Missense_Mutation_p.P609L|PTPRF_uc009vwt.2_Missense_Mutation_p.P791L|PTPRF_uc001cjv.2_Missense_Mutation_p.P691L|PTPRF_uc001cjw.2_Missense_Mutation_p.P457L	NM_002840	NP_002831	P10586	PTPRF_HUMAN	protein tyrosine phosphatase, receptor type, F	1231	Extracellular (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|skin(3)|lung(1)|kidney(1)|central_nervous_system(1)	10	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				TTGAAGGAACCCATGGACCAG	0.587													42	111					0	0	0.008740	0	0
PTPRF	5792	broad.mit.edu	37	1	44083233	44083233	+	Missense_Mutation	SNP	A	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:44083233A>T	uc001cjr.2	+	24	4529	c.4189A>T	c.(4189-4191)ATC>TTC	p.I1397F	PTPRF_uc001cjs.2_Missense_Mutation_p.I1388F|PTPRF_uc001cju.2_Missense_Mutation_p.I786F|PTPRF_uc009vwt.2_Missense_Mutation_p.I957F|PTPRF_uc001cjv.2_Missense_Mutation_p.I868F|PTPRF_uc001cjw.2_Missense_Mutation_p.I623F	NM_002840	NP_002831	P10586	PTPRF_HUMAN	protein tyrosine phosphatase, receptor type, F	1397	Tyrosine-protein phosphatase 1.|Cytoplasmic (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|skin(3)|lung(1)|kidney(1)|central_nervous_system(1)	10	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				CCTTACCTCTATCGATGGTGA	0.552													49	109					0	0	0.014410	0	0
PTPRF	5792	broad.mit.edu	37	1	44083235	44083235	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:44083235C>T	uc001cjr.2	+	24	4531	c.4191C>T	c.(4189-4191)ATC>ATT	p.I1397I	PTPRF_uc001cjs.2_Silent_p.I1388I|PTPRF_uc001cju.2_Silent_p.I786I|PTPRF_uc009vwt.2_Silent_p.I957I|PTPRF_uc001cjv.2_Silent_p.I868I|PTPRF_uc001cjw.2_Silent_p.I623I	NM_002840	NP_002831	P10586	PTPRF_HUMAN	protein tyrosine phosphatase, receptor type, F	1397	Tyrosine-protein phosphatase 1.|Cytoplasmic (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|skin(3)|lung(1)|kidney(1)|central_nervous_system(1)	10	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				TTACCTCTATCGATGGTGAGC	0.552													50	109					0	0	0.014410	0	0
SLC6A9	6536	broad.mit.edu	37	1	44468196	44468196	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:44468196G>A	uc001cll.2	-	7	1257	c.1065C>T	c.(1063-1065)ATC>ATT	p.I355I	SLC6A9_uc009vxe.2_Silent_p.I211I|SLC6A9_uc010okm.1_Silent_p.I282I|SLC6A9_uc001clm.2_Silent_p.I301I|SLC6A9_uc009vxd.2_RNA|SLC6A9_uc010okn.1_Silent_p.I286I|SLC6A9_uc001cln.2_Silent_p.I282I|SLC6A9_uc010oko.1_Silent_p.I171I|SLC6A9_uc010okp.1_RNA	NM_201649	NP_964012	P48067	SC6A9_HUMAN	solute carrier family 6 member 9 isoform 2	355						integral to plasma membrane|membrane fraction	glycine:sodium symporter activity|neurotransmitter:sodium symporter activity				0	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0511)			Glycine(DB00145)	TGGCCTCCAGGATCTTGTCCC	0.632													11	42					0	0	0.013537	0	0
KLF17	128209	broad.mit.edu	37	1	44595255	44595255	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:44595255G>A	uc001clp.2	+	2	370	c.312G>A	c.(310-312)GCG>GCA	p.A104A	KLF17_uc009vxf.1_Silent_p.A67A	NM_173484	NP_775755	Q5JT82	KLF17_HUMAN	zinc finger protein 393	104					regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(166;0.155)					GCCCCCAAGCGACTCTCACTC	0.557													52	73					0	0	0.014410	0	0
KLF17	128209	broad.mit.edu	37	1	44595815	44595815	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:44595815G>A	uc001clp.2	+	2	930	c.872G>A	c.(871-873)GGA>GAA	p.G291E	KLF17_uc009vxf.1_Missense_Mutation_p.G254E	NM_173484	NP_775755	Q5JT82	KLF17_HUMAN	zinc finger protein 393	291	C2H2-type 1.				regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(166;0.155)					GAGAACTGCGGAAAAGCTTAT	0.577													11	74					0	0	0.008291	0	0
BEST4	266675	broad.mit.edu	37	1	45251749	45251749	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:45251749C>T	uc001cmm.2	-	4	682	c.633G>A	c.(631-633)TTG>TTA	p.L211L		NM_153274	NP_695006	Q8NFU0	BEST4_HUMAN	bestrophin 4	211	Extracellular (Potential).					chloride channel complex|plasma membrane	chloride channel activity			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)					CACTCACTTCCAAAAGTAGAC	0.448											OREG0013447	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	36	77					0	0	0.004878	0	0
MAST2	23139	broad.mit.edu	37	1	46474017	46474017	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:46474017C>T	uc001cov.2	+	9	1235	c.952C>T	c.(952-954)CAT>TAT	p.H318Y	MAST2_uc001cow.2_Missense_Mutation_p.H318Y|MAST2_uc001coy.1_Missense_Mutation_p.H26Y|MAST2_uc001coz.1_Missense_Mutation_p.H203Y|MAST2_uc009vya.2_Missense_Mutation_p.H240Y|MAST2_uc001cpa.2_RNA	NM_015112	NP_055927	Q6P0Q8	MAST2_HUMAN	microtubule associated serine/threonine kinase	318					regulation of interleukin-12 biosynthetic process|spermatid differentiation	cytoplasm|cytoskeleton|plasma membrane	ATP binding|magnesium ion binding|phosphatase binding|protein serine/threonine kinase activity			ovary(5)|lung(3)|stomach(2)|breast(1)	11	Acute lymphoblastic leukemia(166;0.155)|Lung SC(450;0.184)					AATGATGAATCATGTTTACAA	0.423													10	20					0	0	0.006214	0	0
FAAH	2166	broad.mit.edu	37	1	46872007	46872007	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:46872007C>T	uc001cpu.2	+	7	1000	c.918C>T	c.(916-918)GAC>GAT	p.D306D	FAAH_uc001cpv.2_Intron	NM_001441	NP_001432	O00519	FAAH1_HUMAN	fatty acid amide hydrolase	306	Cytoplasmic (By similarity).				fatty acid catabolic process	cytoplasm|cytoskeleton|endomembrane system|integral to membrane|organelle membrane	carbon-nitrogen ligase activity, with glutamine as amido-N-donor|fatty acid amide hydrolase activity			ovary(1)|breast(1)	2	Acute lymphoblastic leukemia(166;0.155)				Propofol(DB00818)|Thiopental(DB00599)	TCCGCTTGGACCCCACTGTGC	0.662											OREG0013458	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	16	34					0	0	0.007413	0	0
CYP4B1	1580	broad.mit.edu	37	1	47279266	47279266	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:47279266G>A	uc001cqm.3	+	5	692	c.608G>A	c.(607-609)GGC>GAC	p.G203D	CYP4B1_uc009vyl.1_Missense_Mutation_p.G40D|CYP4B1_uc001cqn.3_Missense_Mutation_p.G203D|CYP4B1_uc009vym.2_Missense_Mutation_p.G188D|CYP4B1_uc010omk.1_Missense_Mutation_p.G40D|CYP4B1_uc010oml.1_Missense_Mutation_p.G40D	NM_000779	NP_000770	P13584	CP4B1_HUMAN	cytochrome P450, family 4, subfamily B,	203					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(166;0.155)					GGAGACACCGGCCTGGGCCAC	0.582													10	30					0	0	0.010729	0	0
CYP4X1	260293	broad.mit.edu	37	1	47501741	47501741	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:47501741C>T	uc001cqt.2	+	6	923	c.673C>T	c.(673-675)CAC>TAC	p.H225Y	CYP4X1_uc001cqr.2_Missense_Mutation_p.H224Y|CYP4X1_uc001cqs.2_Missense_Mutation_p.H160Y	NM_178033	NP_828847	Q8N118	CP4X1_HUMAN	cytochrome P450, family 4, subfamily X,	225						endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)|skin(1)	2						AATCATATTTCACCGCTTGTA	0.388													41	97					0	0	0.007835	0	0
CYP4A22	284541	broad.mit.edu	37	1	47603166	47603166	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:47603166C>T	uc001cqv.1	+	1	60	c.9C>T	c.(7-9)GTC>GTT	p.V3V	CYP4A22_uc009vyo.2_Silent_p.V3V|CYP4A22_uc009vyp.2_Silent_p.V3V	NM_001010969	NP_001010969	Q5TCH4	CP4AM_HUMAN	cytochrome P450, family 4, subfamily A,	3						endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding			skin(2)|ovary(1)|breast(1)	4						CCATGAGTGTCTCTGTCCTGA	0.602													26	66					0	0	0.005443	0	0
CYP4A22	284541	broad.mit.edu	37	1	47610592	47610592	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:47610592G>A	uc001cqv.1	+	9	1223	c.1172G>A	c.(1171-1173)AGA>AAA	p.R391K	CYP4A22_uc009vyo.2_Missense_Mutation_p.R391K|CYP4A22_uc009vyp.2_Missense_Mutation_p.R293K	NM_001010969	NP_001010969	Q5TCH4	CP4AM_HUMAN	cytochrome P450, family 4, subfamily A,	391						endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding			skin(2)|ovary(1)|breast(1)	4						GGCATTGGAAGAGAGCTCAGC	0.577													13	26					0	0	0.007413	0	0
EPS15	2060	broad.mit.edu	37	1	51929354	51929354	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:51929354G>A	uc001csq.1	-	7	584	c.492C>T	c.(490-492)ATC>ATT	p.I164I	EPS15_uc009vyz.1_Silent_p.I164I	NM_001981	NP_001972	P42566	EPS15_HUMAN	epidermal growth factor receptor pathway	164	EH 2.|EF-hand 1.				cell proliferation|clathrin coat assembly|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|protein transport	cytosol|early endosome membrane	calcium ion binding|SH3 domain binding			lung(1)|kidney(1)	2						CTCTTCCAAGGATATCCACAG	0.303			T	MLL	ALL								7	29					0	0	0.001984	0	0
GPX7	2882	broad.mit.edu	37	1	53072487	53072487	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:53072487C>T	uc001cue.2	+	2	309	c.270C>T	c.(268-270)GGC>GGT	p.G90G		NM_015696	NP_056511	Q96SL4	GPX7_HUMAN	glutathione peroxidase 7 precursor	90					response to oxidative stress	extracellular region	glutathione peroxidase activity				0					Glutathione(DB00143)	ACCAGTTTGGCCAACAGGAGC	0.587													31	51					0	0	0.012213	0	0
ZYG11B	79699	broad.mit.edu	37	1	53282222	53282222	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:53282222C>T	uc001cuj.2	+	13	2160	c.1965C>T	c.(1963-1965)TTC>TTT	p.F655F	ZYG11B_uc009vzg.2_RNA|ZYG11B_uc010onj.1_Silent_p.F576F|ZYG11B_uc009vzh.2_Silent_p.F77F	NM_024646	NP_078922	Q9C0D3	ZY11B_HUMAN	zyg-11 homolog B	655							protein binding			upper_aerodigestive_tract(2)|ovary(1)|pancreas(1)	4						ATCCATTTTTCCCATTACTTG	0.373													42	95					0	0	0.014410	0	0
LRP8	7804	broad.mit.edu	37	1	53722919	53722919	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:53722919G>A	uc001cvi.1	-	15	2569	c.2427C>T	c.(2425-2427)TCC>TCT	p.S809S	LRP8_uc001cvh.1_Silent_p.S362S|LRP8_uc001cvk.1_Silent_p.S639S|LRP8_uc001cvj.1_Silent_p.S809S|LRP8_uc001cvl.1_Intron|LRP8_uc001cvm.1_Silent_p.S394S	NM_004631	NP_004622	Q14114	LRP8_HUMAN	low density lipoprotein receptor-related protein	809	Extracellular (Potential).				cytokine-mediated signaling pathway|endocytosis|lipid metabolic process|platelet activation|proteolysis	caveola	calcium ion binding|very-low-density lipoprotein particle receptor activity				0						TACAGTGCTGGGAGTGGTTGC	0.552													10	28					0	0	0.006214	0	0
TMEM59	9528	broad.mit.edu	37	1	54509162	54509162	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:54509162G>A	uc001cwp.2	-	4	677	c.427C>T	c.(427-429)CCT>TCT	p.P143S	TMEM59_uc001cwn.2_Missense_Mutation_p.P6S|TMEM59_uc001cwo.2_Missense_Mutation_p.P6S|TMEM59_uc001cwq.2_Missense_Mutation_p.P143S|TMEM59_uc001cwr.2_Missense_Mutation_p.P76S|TMEM59_uc001cws.1_Missense_Mutation_p.P154S	NM_004872	NP_004863	Q9BXS4	TMM59_HUMAN	thymic dendritic cell-derived factor 1	143	Extracellular (Potential).					Golgi membrane|integral to membrane					0						AGAGTTAGAGGAAAGAGTAGG	0.333													26	53					0	0	0.009535	0	0
C1orf175	374977	broad.mit.edu	37	1	55174728	55174728	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:55174728C>T	uc010ooe.1	+	23	4033	c.3709C>T	c.(3709-3711)CGT>TGT	p.R1237C	C1orf175_uc001cxq.2_RNA|C1orf175_uc001cxs.2_RNA|C1orf175_uc010ood.1_Missense_Mutation_p.R755C|C1orf175_uc010oof.1_RNA|C1orf175_uc001cxr.1_RNA|C1orf175_uc009vzq.1_RNA|C1orf175_uc001cxt.1_RNA|C1orf175_uc009vzr.1_Missense_Mutation_p.R438C	NM_001039464	NP_001034553	Q68CQ1	HEAT8_HUMAN	hypothetical protein LOC374977	1237						integral to membrane	binding				0						GACAGAAGATCGTCTGAATGA	0.517													30	76					0	0	0.012213	0	0
BSND	7809	broad.mit.edu	37	1	55470745	55470745	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:55470745G>A	uc001cye.2	+	2	471	c.228G>A	c.(226-228)AAG>AAA	p.K76K		NM_057176	NP_476517	Q8WZ55	BSND_HUMAN	barttin	76	Cytoplasmic (Potential).					basolateral plasma membrane|cytoplasm|integral to plasma membrane|protein complex				ovary(1)|skin(1)	2						TCTCCCCAAAGGCCATGGGCC	0.607													6	54					0	0	0.001984	0	0
PCSK9	255738	broad.mit.edu	37	1	55512300	55512300	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:55512300G>A	uc001cyf.1	+	3	795	c.504G>A	c.(502-504)GCG>GCA	p.A168A	PCSK9_uc010ool.1_RNA|PCSK9_uc010oom.1_Intron	NM_174936	NP_777596	Q8NBP7	PCSK9_HUMAN	proprotein convertase subtilisin/kexin type 9	168	Peptidase S8.				cellular response to insulin stimulus|cellular response to starvation|cholesterol homeostasis|cholesterol metabolic process|kidney development|liver development|low-density lipoprotein particle receptor catabolic process|lysosomal transport|negative regulation of catalytic activity|negative regulation of low-density lipoprotein particle clearance|negative regulation of receptor recycling|neuron differentiation|positive regulation of neuron apoptosis|positive regulation of receptor internalization|protein autoprocessing|regulation of receptor activity	extracellular space|late endosome|lysosome|perinuclear region of cytoplasm	apolipoprotein receptor binding|identical protein binding|low-density lipoprotein particle receptor binding|serine-type endopeptidase activity|very-low-density lipoprotein particle receptor binding			ovary(2)|central_nervous_system(1)|skin(1)	4						GGTACCGGGCGGATGAATACC	0.617													87	181					0	0	0.014410	0	0
PCSK9	255738	broad.mit.edu	37	1	55521827	55521827	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:55521827G>A	uc001cyf.1	+	6	1252	c.961G>A	c.(961-963)GAT>AAT	p.D321N	PCSK9_uc010oom.1_RNA	NM_174936	NP_777596	Q8NBP7	PCSK9_HUMAN	proprotein convertase subtilisin/kexin type 9	321	Peptidase S8.				cellular response to insulin stimulus|cellular response to starvation|cholesterol homeostasis|cholesterol metabolic process|kidney development|liver development|low-density lipoprotein particle receptor catabolic process|lysosomal transport|negative regulation of catalytic activity|negative regulation of low-density lipoprotein particle clearance|negative regulation of receptor recycling|neuron differentiation|positive regulation of neuron apoptosis|positive regulation of receptor internalization|protein autoprocessing|regulation of receptor activity	extracellular space|late endosome|lysosome|perinuclear region of cytoplasm	apolipoprotein receptor binding|identical protein binding|low-density lipoprotein particle receptor binding|serine-type endopeptidase activity|very-low-density lipoprotein particle receptor binding			ovary(2)|central_nervous_system(1)|skin(1)	4						CTTCCGGGACGATGCCTGCCT	0.592													22	113					0	0	0.003330	0	0
USP24	23358	broad.mit.edu	37	1	55547002	55547003	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:55547002_55547003CC>TT	uc001cyg.3	-	56	6590_6591	c.6590_6591GG>AA	c.(6589-6591)AGG>AAA	p.R2197K		NM_015306	NP_056121	Q9UPU5	UBP24_HUMAN	ubiquitin specific protease 24	2357					ubiquitin-dependent protein catabolic process		binding|cysteine-type peptidase activity|ubiquitin thiolesterase activity			ovary(6)|kidney(6)|breast(1)	13						TACCAACATTCCTTTGGGATGA	0.371													42	261					0	0	0.004672	0	0
PRKAA2	5563	broad.mit.edu	37	1	57169990	57169990	+	Nonsense_Mutation	SNP	A	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:57169990A>T	uc001cyk.3	+	7	1206	c.1135A>T	c.(1135-1137)AAA>TAA	p.K379*		NM_006252	NP_006243	P54646	AAPK2_HUMAN	AMP-activated protein kinase alpha 2 catalytic	379					carnitine shuttle|cell cycle arrest|cholesterol biosynthetic process|energy reserve metabolic process|fatty acid biosynthetic process|insulin receptor signaling pathway|regulation of fatty acid biosynthetic process|regulation of fatty acid oxidation	cytosol|nucleoplasm	ATP binding|metal ion binding			breast(4)|ovary(1)|stomach(1)	6						AGACAGCCCCAAAGCAAGATG	0.468													21	34					0	0	0.014323	0	0
C8A	731	broad.mit.edu	37	1	57373655	57373655	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:57373655G>A	uc001cyo.2	+	9	1381	c.1249G>A	c.(1249-1251)GAA>AAA	p.E417K		NM_000562	NP_000553	P07357	CO8A_HUMAN	complement component 8, alpha polypeptide	417	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular space|membrane attack complex				ovary(1)|central_nervous_system(1)|skin(1)	3						CATGGCTGTGGAAGACATTAT	0.517													15	36					0	0	0.004007	0	0
C8B	732	broad.mit.edu	37	1	57399055	57399055	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:57399055G>A	uc001cyp.2	-	10	1572	c.1505C>T	c.(1504-1506)TCC>TTC	p.S502F	C8B_uc010oon.1_Missense_Mutation_p.S440F|C8B_uc010ooo.1_Missense_Mutation_p.S450F	NM_000066	NP_000057	P07358	CO8B_HUMAN	complement component 8, beta polypeptide	502	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	membrane attack complex				central_nervous_system(2)|large_intestine(1)|ovary(1)	4						ACAGTGGCAGGAACTAACTTC	0.522													28	56					0	0	0.009535	0	0
C1orf87	127795	broad.mit.edu	37	1	60520946	60520946	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:60520946T>C	uc001czs.1	-	3	364	c.272A>G	c.(271-273)AAC>AGC	p.N91S		NM_152377	NP_689590	Q8N0U7	CA087_HUMAN	hypothetical protein LOC127795	91							calcium ion binding			ovary(1)|breast(1)	2						TTTCTGGTTGTTCTCTGGGTG	0.433													82	151					0	0	0.014410	0	0
NFIA	4774	broad.mit.edu	37	1	61824904	61824904	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:61824904G>A	uc001czw.2	+	6	1388	c.904G>A	c.(904-906)GGA>AGA	p.G302R	NFIA_uc001czy.2_Missense_Mutation_p.G294R|NFIA_uc010oos.1_Missense_Mutation_p.G347R|NFIA_uc001czv.2_Missense_Mutation_p.G302R	NM_001134673	NP_001128145	Q12857	NFIA_HUMAN	nuclear factor I/A isoform 1	302					DNA replication|viral genome replication	cell junction|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding			pancreas(1)|skin(1)	2						GCGCTCCCCAGGAAGTGGCAG	0.522													21	73					0	0	0.014323	0	0
INADL	10207	broad.mit.edu	37	1	62253636	62253636	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:62253636C>T	uc001dab.2	+	8	1174	c.1060C>T	c.(1060-1062)CCT>TCT	p.P354S	INADL_uc009waf.1_Missense_Mutation_p.P354S|INADL_uc001daa.2_Missense_Mutation_p.P354S|INADL_uc001dad.3_Missense_Mutation_p.P51S	NM_176877	NP_795352	Q8NI35	INADL_HUMAN	InaD-like	354					intracellular signal transduction|tight junction assembly	apical plasma membrane|perinuclear region of cytoplasm|tight junction	protein binding			ovary(3)|skin(1)	4						CAGCAAGGGCCCTGGTTCTGT	0.488													11	33					0	0	0.001855	0	0
INADL	10207	broad.mit.edu	37	1	62340985	62340985	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:62340985G>A	uc001dab.2	+	21	3020	c.2906G>A	c.(2905-2907)AGA>AAA	p.R969K	INADL_uc009waf.1_Missense_Mutation_p.R969K|INADL_uc001daa.2_Missense_Mutation_p.R969K|INADL_uc001dad.3_Missense_Mutation_p.R666K|INADL_uc001dac.2_RNA	NM_176877	NP_795352	Q8NI35	INADL_HUMAN	InaD-like	969					intracellular signal transduction|tight junction assembly	apical plasma membrane|perinuclear region of cytoplasm|tight junction	protein binding			ovary(3)|skin(1)	4						CAACAAGGCAGATTTGACGAC	0.333													21	63					0	0	0.008871	0	0
INADL	10207	broad.mit.edu	37	1	62349956	62349956	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:62349956C>T	uc001dab.2	+	22	3121	c.3007C>T	c.(3007-3009)CCT>TCT	p.P1003S	INADL_uc009waf.1_Missense_Mutation_p.P1003S|INADL_uc001daa.2_Missense_Mutation_p.P1003S|INADL_uc001dad.3_Missense_Mutation_p.P700S|INADL_uc001dac.2_RNA	NM_176877	NP_795352	Q8NI35	INADL_HUMAN	InaD-like	1003					intracellular signal transduction|tight junction assembly	apical plasma membrane|perinuclear region of cytoplasm|tight junction	protein binding			ovary(3)|skin(1)	4						CATTGACCTTCCTGTTGTGGC	0.463													45	108					0	0	0.011902	0	0
INADL	10207	broad.mit.edu	37	1	62550265	62550265	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:62550265C>T	uc001dab.2	+	33	4436	c.4322C>T	c.(4321-4323)TCC>TTC	p.S1441F	INADL_uc009waf.1_Missense_Mutation_p.S1441F|INADL_uc001daa.2_Missense_Mutation_p.S1441F|INADL_uc001dad.3_Missense_Mutation_p.S1138F|INADL_uc001dac.2_RNA|INADL_uc010oot.1_Missense_Mutation_p.S225F|INADL_uc009wag.2_Missense_Mutation_p.S225F|INADL_uc010oou.1_Missense_Mutation_p.S114F	NM_176877	NP_795352	Q8NI35	INADL_HUMAN	InaD-like	1441	PDZ 8.				intracellular signal transduction|tight junction assembly	apical plasma membrane|perinuclear region of cytoplasm|tight junction	protein binding			ovary(3)|skin(1)	4						ATAGAAATATCCAAGGGACGT	0.458													18	60					0	0	0.008871	0	0
L1TD1	54596	broad.mit.edu	37	1	62672691	62672691	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:62672691G>A	uc001dae.3	+	3	693	c.391G>A	c.(391-393)GAA>AAA	p.E131K		NM_019079	NP_061952	Q5T7N2	LITD1_HUMAN	LINE-1 type transposase domain containing 1	131										ovary(1)|skin(1)	2						tgatgataatgaaaatttaac	0.02													32	65					0	0	0.010818	0	0
KANK4	163782	broad.mit.edu	37	1	62739144	62739144	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:62739144C>T	uc001dah.3	-	3	2009	c.1632G>A	c.(1630-1632)GGG>GGA	p.G544G	KANK4_uc001dai.3_Intron|KANK4_uc001dag.3_5'Flank	NM_181712	NP_859063	Q5T7N3	KANK4_HUMAN	ankyrin repeat domain 38	544										ovary(3)|skin(2)|lung(1)	6						GGTGCTCCTTCCCTGGGAGAT	0.617													25	38					0	0	0.005443	0	0
KANK4	163782	broad.mit.edu	37	1	62739545	62739545	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:62739545C>T	uc001dah.3	-	3	1608	c.1231G>A	c.(1231-1233)GAC>AAC	p.D411N	KANK4_uc001dai.3_Intron|KANK4_uc001dag.3_5'Flank	NM_181712	NP_859063	Q5T7N3	KANK4_HUMAN	ankyrin repeat domain 38	411										ovary(3)|skin(2)|lung(1)	6						ACCATCACGTCCGTCTGGCCC	0.517													33	114					0	0	0.012213	0	0
DOCK7	85440	broad.mit.edu	37	1	63024829	63024829	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:63024829G>A	uc001daq.2	-	20	2296	c.2262C>T	c.(2260-2262)GTC>GTT	p.V754V	DOCK7_uc001dan.2_Silent_p.V646V|DOCK7_uc001dao.2_Silent_p.V646V|DOCK7_uc001dap.2_Silent_p.V754V	NM_033407	NP_212132	Q96N67	DOCK7_HUMAN	dedicator of cytokinesis 7	754	DHR-1.				activation of Rac GTPase activity|axonogenesis|establishment of neuroblast polarity|microtubule cytoskeleton organization|positive regulation of peptidyl-serine phosphorylation	axon|basal part of cell|growth cone	GTP binding|guanyl-nucleotide exchange factor activity|Rac GTPase binding			ovary(2)	2						CCCCAATTCGGACTGGGAACA	0.393													10	22					0	0	0.013537	0	0
ROR1	4919	broad.mit.edu	37	1	64624850	64624850	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:64624850C>T	uc001dbj.2	+	8	1760	c.1361C>T	c.(1360-1362)TCA>TTA	p.S454L	uc001dbl.2_Intron	NM_005012	NP_005003	Q01973	ROR1_HUMAN	receptor tyrosine kinase-like orphan receptor 1	454	Cytoplasmic (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	cytoplasm|integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity|Wnt-protein binding			ovary(6)|large_intestine(3)|breast(3)|stomach(2)|lung(2)|central_nervous_system(1)|skin(1)|kidney(1)	19						GTAGAGATGTCAATGCTGAAT	0.448													19	35					0	0	0.010504	0	0
ROR1	4919	broad.mit.edu	37	1	64643822	64643822	+	Nonsense_Mutation	SNP	G	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:64643822G>T	uc001dbj.2	+	9	2497	c.2098G>T	c.(2098-2100)GAA>TAA	p.E700*	uc001dbm.2_5'Flank	NM_005012	NP_005003	Q01973	ROR1_HUMAN	receptor tyrosine kinase-like orphan receptor 1	700	Cytoplasmic (Potential).|Protein kinase.				transmembrane receptor protein tyrosine kinase signaling pathway	cytoplasm|integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity|Wnt-protein binding			ovary(6)|large_intestine(3)|breast(3)|stomach(2)|lung(2)|central_nervous_system(1)|skin(1)|kidney(1)	19						CAGTAACCAGGAAGTGATTGA	0.458													25	69					1.42536e-11	1.5372e-11	0.004656	1	0
CACHD1	57685	broad.mit.edu	37	1	65119465	65119465	+	Missense_Mutation	SNP	T	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:65119465T>A	uc001dbo.1	+	11	1517	c.1412T>A	c.(1411-1413)CTT>CAT	p.L471H	CACHD1_uc001dbp.1_Missense_Mutation_p.L226H|CACHD1_uc001dbq.1_Missense_Mutation_p.L226H	NM_020925	NP_065976	Q5VU97	CAHD1_HUMAN	cache domain containing 1	522	Extracellular (Potential).|Cache 1.				calcium ion transport	integral to membrane				ovary(2)	2						CACCCATCTCTTACCAGGCCA	0.338													51	117					0	0	0.014410	0	0
CACHD1	57685	broad.mit.edu	37	1	65130323	65130323	+	Missense_Mutation	SNP	C	T	T	rs145700540		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:65130323C>T	uc001dbo.1	+	15	2189	c.2084C>T	c.(2083-2085)TCC>TTC	p.S695F	CACHD1_uc001dbp.1_Missense_Mutation_p.S450F|CACHD1_uc001dbq.1_Missense_Mutation_p.S450F|CACHD1_uc010opa.1_5'Flank	NM_020925	NP_065976	Q5VU97	CAHD1_HUMAN	cache domain containing 1	746	Extracellular (Potential).				calcium ion transport	integral to membrane				ovary(2)	2						TATCCTGGTTCCCTCATGGAC	0.458													16	118					0	0	0.006122	0	0
LEPR	3953	broad.mit.edu	37	1	66088588	66088588	+	Splice_Site	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:66088588G>A	uc001dci.2	+	19	2800	c.2598_splice	c.e19-1	p.R866_splice	LEPR_uc001dcg.2_Splice_Site_p.R866_splice|LEPR_uc001dch.2_Splice_Site_p.R866_splice|LEPR_uc009waq.2_Intron|LEPR_uc001dcj.2_Splice_Site_p.R866_splice|LEPR_uc001dck.2_Splice_Site_p.R866_splice	NM_002303	NP_002294	P48357	LEPR_HUMAN	leptin receptor isoform 1						energy reserve metabolic process|multicellular organismal development	extracellular region|integral to membrane|plasma membrane	cytokine receptor activity			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(397;0.00722)|KIRC - Kidney renal clear cell carcinoma(1967;0.094)		ATCCTTTGTAGAATGAAAAAG	0.348													6	30					0	0	0.001168	0	0
PDE4B	5142	broad.mit.edu	37	1	66384349	66384349	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:66384349G>A	uc001dcn.2	+	3	303	c.112G>A	c.(112-114)GAC>AAC	p.D38N	PDE4B_uc009war.2_Intron|PDE4B_uc001dco.2_Missense_Mutation_p.D38N	NM_001037341	NP_001032418	Q07343	PDE4B_HUMAN	phosphodiesterase 4B isoform 1	38					signal transduction	cytosol|insoluble fraction|soluble fraction	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding			ovary(2)|central_nervous_system(1)	3					Adenosine monophosphate(DB00131)|Amrinone(DB01427)|Caffeine(DB00201)|Cilostazol(DB01166)|Dyphylline(DB00651)|Enprofylline(DB00824)|Papaverine(DB01113)|Pentoxifylline(DB00806)|Theophylline(DB00277)	ACTTGGGATCGACCTCTGGAG	0.433													20	43					0	0	0.012319	0	0
TCTEX1D1	200132	broad.mit.edu	37	1	67243089	67243089	+	Silent	SNP	T	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:67243089T>C	uc001dcv.2	+	5	623	c.492T>C	c.(490-492)AAT>AAC	p.N164N	TCTEX1D1_uc009wau.2_RNA|TCTEX1D1_uc009wav.2_RNA	NM_152665	NP_689878	Q8N7M0	TC1D1_HUMAN	Tctex1 domain containing 1	164											0						TTTTCAGAAATTCTTCTCTCT	0.378													40	76					0	0	0.009718	0	0
WDR78	79819	broad.mit.edu	37	1	67299299	67299299	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:67299299G>A	uc001dcx.2	-	13	2038	c.1982C>T	c.(1981-1983)GCT>GTT	p.A661V	WDR78_uc009waw.2_Missense_Mutation_p.A407V|WDR78_uc009wax.2_RNA	NM_024763	NP_079039	Q5VTH9	WDR78_HUMAN	WD repeat domain 78 isoform 1	661	WD 3.									ovary(2)	2						CATTCCAGGAGCCTGTCGAGA	0.343													9	31					0	0	0.004482	0	0
DIRAS3	9077	broad.mit.edu	37	1	68512467	68512467	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:68512467C>T	uc001ded.2	-	2	809	c.514G>A	c.(514-516)GAG>AAG	p.E172K	uc001deb.1_Intron|uc001dec.1_Intron	NM_004675	NP_004666	O95661	DIRA3_HUMAN	DIRAS family, GTP-binding RAS-like 3	172					regulation of cyclin-dependent protein kinase activity|regulation of gene expression by genetic imprinting|small GTPase mediated signal transduction	plasma membrane	GTP binding|GTPase activity			skin(1)	1						CAATTCCACTCCATCGCACAG	0.527													35	68					0	0	0.003755	0	0
LRRC7	57554	broad.mit.edu	37	1	70478773	70478773	+	Splice_Site	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:70478773G>A	uc001dep.2	+	11	1166	c.1136_splice	c.e11+1	p.R379_splice	LRRC7_uc009wbg.2_Splice_Site	NM_020794	NP_065845	Q96NW7	LRRC7_HUMAN	leucine rich repeat containing 7							centrosome|focal adhesion|nucleolus	protein binding			ovary(9)|breast(2)|central_nervous_system(2)|liver(1)	14						GTGACAACAGGTATTTTTGCA	0.328													43	70					0	0	0.009718	0	0
LRRC7	57554	broad.mit.edu	37	1	70488881	70488881	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:70488881G>A	uc001dep.2	+	15	1534	c.1504G>A	c.(1504-1506)GAT>AAT	p.D502N	LRRC7_uc009wbg.2_Intron	NM_020794	NP_065845	Q96NW7	LRRC7_HUMAN	leucine rich repeat containing 7	502						centrosome|focal adhesion|nucleolus	protein binding			ovary(9)|breast(2)|central_nervous_system(2)|liver(1)	14						ACTGTCTGGCGATTGCTGCAC	0.572													17	39					0	0	0.004990	0	0
LRRC7	57554	broad.mit.edu	37	1	70493873	70493873	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:70493873G>A	uc001dep.2	+	16	1730	c.1700G>A	c.(1699-1701)CGA>CAA	p.R567Q	LRRC7_uc009wbg.2_Intron	NM_020794	NP_065845	Q96NW7	LRRC7_HUMAN	leucine rich repeat containing 7	567						centrosome|focal adhesion|nucleolus	protein binding			ovary(9)|breast(2)|central_nervous_system(2)|liver(1)	14						AACCTAAAACGATATCCAACT	0.323													23	50					0	0	0.003330	0	0
LRRC40	55631	broad.mit.edu	37	1	70644645	70644645	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:70644645G>A	uc001der.1	-	6	745	c.693C>T	c.(691-693)CTC>CTT	p.L231L		NM_017768	NP_060238	Q9H9A6	LRC40_HUMAN	leucine rich repeat containing 40	231	LRR 7.									ovary(1)	1						TAGTTTCCAAGAGATTTGAAT	0.308													11	29					0	0	0.001855	0	0
LRRIQ3	127255	broad.mit.edu	37	1	74575135	74575135	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:74575135C>T	uc001dfy.3	-	5	1002	c.810G>A	c.(808-810)AAG>AAA	p.K270K	LRRIQ3_uc001dfz.3_RNA	NM_001105659	NP_001099129	A6PVS8	LRIQ3_HUMAN	leucine-rich repeats and IQ motif containing 3	270										ovary(2)	2						AAAAGAGATCCTTAAGGAGCT	0.269													18	19					0	0	0.006122	0	0
C1orf173	127254	broad.mit.edu	37	1	75039122	75039122	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:75039122C>T	uc001dgg.2	-	14	2491	c.2272G>A	c.(2272-2274)GAA>AAA	p.E758K		NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	758	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						TGCTGGGATTCCTTGTTTGAG	0.408													28	39					0	0	0.010818	0	0
C1orf173	127254	broad.mit.edu	37	1	75065462	75065462	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:75065462G>A	uc001dgg.2	-	11	1862	c.1643C>T	c.(1642-1644)TCA>TTA	p.S548L	uc001dgh.2_Intron|C1orf173_uc001dgi.3_Missense_Mutation_p.S342L	NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	548	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						TGCCTTCTGTGATGAGGTTTC	0.423													46	66					0	0	0.010771	0	0
C1orf173	127254	broad.mit.edu	37	1	75072435	75072435	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:75072435C>T	uc001dgg.2	-	10	1558	c.1339G>A	c.(1339-1341)GAG>AAG	p.E447K	uc001dgh.2_Intron|C1orf173_uc001dgi.3_Missense_Mutation_p.E241K	NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	447	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						GTTTTGTTCTCCTTGATCTCA	0.403													47	88					0	0	0.014410	0	0
SLC44A5	204962	broad.mit.edu	37	1	75688085	75688085	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:75688085C>T	uc001dgu.2	-	14	1190	c.1046G>A	c.(1045-1047)CGA>CAA	p.R349Q	SLC44A5_uc001dgt.2_Missense_Mutation_p.R349Q|SLC44A5_uc001dgs.2_Missense_Mutation_p.R307Q|SLC44A5_uc001dgr.2_Missense_Mutation_p.R307Q|SLC44A5_uc010oqz.1_Missense_Mutation_p.R388Q|SLC44A5_uc010ora.1_Missense_Mutation_p.R343Q|SLC44A5_uc010orb.1_Missense_Mutation_p.R219Q	NM_152697	NP_689910	Q8NCS7	CTL5_HUMAN	solute carrier family 44, member 5 isoform A	349	Cytoplasmic (Potential).					integral to membrane|plasma membrane	choline transmembrane transporter activity			ovary(2)|skin(2)	4						GACTCGGATTCGATTCCTGAG	0.393													15	40					0	0	0.004007	0	0
SLC44A5	204962	broad.mit.edu	37	1	75708618	75708618	+	Missense_Mutation	SNP	A	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:75708618A>C	uc001dgu.2	-	8	568	c.424T>G	c.(424-426)TGG>GGG	p.W142G	SLC44A5_uc001dgt.2_Missense_Mutation_p.W142G|SLC44A5_uc001dgs.2_Missense_Mutation_p.W100G|SLC44A5_uc001dgr.2_Missense_Mutation_p.W100G|SLC44A5_uc010oqz.1_Missense_Mutation_p.W181G|SLC44A5_uc010ora.1_Missense_Mutation_p.W136G|SLC44A5_uc010orb.1_Missense_Mutation_p.W12G	NM_152697	NP_689910	Q8NCS7	CTL5_HUMAN	solute carrier family 44, member 5 isoform A	142	Extracellular (Potential).					integral to membrane|plasma membrane	choline transmembrane transporter activity			ovary(2)|skin(2)	4						TAGTCTTCCCAGTAGCTTTTG	0.373													10	104					0	0	0.010729	0	0
ST6GALNAC3	256435	broad.mit.edu	37	1	76877777	76877777	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:76877777C>T	uc001dhh.2	+	3	461	c.298C>T	c.(298-300)CGA>TGA	p.R100*	ST6GALNAC3_uc001dhg.3_Nonsense_Mutation_p.R100*|ST6GALNAC3_uc010orh.1_Nonsense_Mutation_p.R35*	NM_152996	NP_694541	Q8NDV1	SIA7C_HUMAN	sialyltransferase 7C isoform 1	100	Lumenal (Potential).				protein glycosylation	integral to Golgi membrane	sialyltransferase activity			ovary(3)|skin(2)	5						TGAGATAGATCGATCCTCCTG	0.473													29	41					0	0	0.007291	0	0
FAM73A	374986	broad.mit.edu	37	1	78272765	78272765	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:78272765C>T	uc001dhx.2	+	5	648	c.616C>T	c.(616-618)CCA>TCA	p.P206S	FAM73A_uc010ork.1_Missense_Mutation_p.P206S|FAM73A_uc010orl.1_Missense_Mutation_p.P168S|FAM73A_uc001dhy.1_5'UTR	NM_198549	NP_940951	Q8NAN2	FA73A_HUMAN	hypothetical protein LOC374986	206						integral to membrane				ovary(1)	1				Colorectal(170;0.226)		TGTGACTACTCCAGAGAACTT	0.299													23	50					0	0	0.004656	0	0
PTGFR	5737	broad.mit.edu	37	1	78959150	78959150	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:78959150G>A	uc001din.2	+	2	988	c.722G>A	c.(721-723)AGA>AAA	p.R241K	PTGFR_uc001dim.2_Missense_Mutation_p.R241K	NM_000959	NP_000950	P43088	PF2R_HUMAN	prostaglandin F receptor isoform a precursor	241	Cytoplasmic (Potential).				parturition	extracellular region|integral to plasma membrane	prostaglandin F receptor activity			ovary(3)|breast(2)|skin(1)	6				Colorectal(170;0.248)	Bimatoprost(DB00905)|Latanoprost(DB00654)|Travoprost(DB00287)	AGACAAGGCAGATCTCATCAT	0.423													30	43					0	0	0.008361	0	0
IFI44	10561	broad.mit.edu	37	1	79129455	79129455	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:79129455C>T	uc001dip.3	+	9	1418	c.1294C>T	c.(1294-1296)CTA>TTA	p.L432L		NM_006417	NP_006408	Q8TCB0	IFI44_HUMAN	interferon-induced, hepatitis C-associated	432					response to virus	cytoplasm				ovary(1)|central_nervous_system(1)	2						CTCAGGGAATCTAAGGGAGGA	0.363													9	33					0	0	0.008291	0	0
ELTD1	64123	broad.mit.edu	37	1	79358832	79358832	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:79358832G>A	uc001diq.3	-	13	1948	c.1792C>T	c.(1792-1794)CGT>TGT	p.R598C		NM_022159	NP_071442	Q9HBW9	ELTD1_HUMAN	EGF, latrophilin and seven transmembrane domain	598	Cytoplasmic (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(1)|skin(1)	2				COAD - Colon adenocarcinoma(225;0.0905)|Colorectal(170;0.103)|all cancers(265;0.105)|Epithelial(280;0.148)		GCAGTGTGACGAAAAACTTTG	0.299													18	24					0	0	0.012319	0	0
LPHN2	23266	broad.mit.edu	37	1	82434986	82434986	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:82434986G>A	uc001dit.3	+	14	2778	c.2597G>A	c.(2596-2598)CGA>CAA	p.R866Q	LPHN2_uc001dis.2_Intron|LPHN2_uc001diu.2_Missense_Mutation_p.R866Q|LPHN2_uc001div.2_Missense_Mutation_p.R866Q|LPHN2_uc009wcd.2_Missense_Mutation_p.R866Q|LPHN2_uc001diw.2_Missense_Mutation_p.R450Q|LPHN2_uc009wce.1_5'Flank	NM_012302	NP_036434	O95490	LPHN2_HUMAN	latrophilin 2 precursor	879	Cytoplasmic (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|latrotoxin receptor activity|sugar binding			ovary(3)|lung(3)|breast(2)|central_nervous_system(1)	9				all cancers(265;0.00142)|Epithelial(280;0.00829)|OV - Ovarian serous cystadenocarcinoma(397;0.077)|STAD - Stomach adenocarcinoma(256;0.248)		CAGAGTGACCGAAATACTATT	0.408													43	111					0	0	0.011902	0	0
LPHN2	23266	broad.mit.edu	37	1	82436123	82436123	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:82436123G>A	uc001dit.3	+	15	2989	c.2808G>A	c.(2806-2808)AGG>AGA	p.R936R	LPHN2_uc001dis.2_Intron|LPHN2_uc001diu.2_Silent_p.R936R|LPHN2_uc001div.2_Silent_p.R936R|LPHN2_uc009wcd.2_Silent_p.R936R|LPHN2_uc001diw.2_Silent_p.R520R|LPHN2_uc009wce.1_Silent_p.R22R	NM_012302	NP_036434	O95490	LPHN2_HUMAN	latrophilin 2 precursor	949	Cytoplasmic (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|latrotoxin receptor activity|sugar binding			ovary(3)|lung(3)|breast(2)|central_nervous_system(1)	9				all cancers(265;0.00142)|Epithelial(280;0.00829)|OV - Ovarian serous cystadenocarcinoma(397;0.077)|STAD - Stomach adenocarcinoma(256;0.248)		AATATTCAAGGAAAAAATATT	0.378													27	61					0	0	0.004656	0	0
LPHN2	23266	broad.mit.edu	37	1	82456238	82456238	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:82456238C>T	uc001dit.3	+	21	3802	c.3621C>T	c.(3619-3621)ATC>ATT	p.I1207I	LPHN2_uc001dis.2_Silent_p.I187I|LPHN2_uc001diu.2_Silent_p.I1207I|LPHN2_uc001div.2_3'UTR|LPHN2_uc009wcd.2_3'UTR|LPHN2_uc001diw.2_Silent_p.I834I	NM_012302	NP_036434	O95490	LPHN2_HUMAN	latrophilin 2 precursor	1263	Cytoplasmic (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|latrotoxin receptor activity|sugar binding			ovary(3)|lung(3)|breast(2)|central_nervous_system(1)	9				all cancers(265;0.00142)|Epithelial(280;0.00829)|OV - Ovarian serous cystadenocarcinoma(397;0.077)|STAD - Stomach adenocarcinoma(256;0.248)		AGAAAATGATCATTTCAGAAT	0.463													12	26					0	0	0.013537	0	0
TTLL7	79739	broad.mit.edu	37	1	84376910	84376910	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:84376910C>T	uc001djc.2	-	15	2120	c.1724G>A	c.(1723-1725)AGA>AAA	p.R575K	TTLL7_uc001djb.2_RNA|TTLL7_uc001djd.2_RNA|TTLL7_uc001dje.2_RNA|TTLL7_uc001djf.2_RNA|TTLL7_uc001djg.2_RNA	NM_024686	NP_078962	Q6ZT98	TTLL7_HUMAN	tubulin tyrosine ligase-like family, member 7	575				R -> G (in Ref. 4; AAH60878).	cell differentiation|nervous system development|protein modification process	cilium|dendrite|microtubule basal body|perikaryon	tubulin-tyrosine ligase activity			ovary(1)	1				all cancers(265;0.0126)|Epithelial(280;0.0372)|OV - Ovarian serous cystadenocarcinoma(397;0.16)		TTGCTTTTCTCTTTTCTTATT	0.328													14	38					0	0	0.003163	0	0
MCOLN3	55283	broad.mit.edu	37	1	85484831	85484831	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:85484831G>A	uc001dkp.2	-	13	1730	c.1637C>T	c.(1636-1638)TCT>TTT	p.S546F	MCOLN3_uc001dko.2_Missense_Mutation_p.S165F|MCOLN3_uc001dkq.2_Missense_Mutation_p.S490F	NM_018298	NP_060768	Q8TDD5	MCLN3_HUMAN	mucolipin 3	546						integral to membrane	ion channel activity			skin(1)	1				all cancers(265;0.00957)|Epithelial(280;0.0254)		GCAGAATAAAGATACTGGAGG	0.373													7	44					0	0	0.003080	0	0
DDAH1	23576	broad.mit.edu	37	1	85824519	85824519	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:85824519C>T	uc001dlb.2	-	2	476	c.315G>A	c.(313-315)ATG>ATA	p.M105I	DDAH1_uc001dlc.2_Missense_Mutation_p.M2I|uc001dla.1_Intron|DDAH1_uc010osb.1_Missense_Mutation_p.M5I|DDAH1_uc009wco.2_Missense_Mutation_p.M2I	NM_012137	NP_036269	O94760	DDAH1_HUMAN	dimethylarginine dimethylaminohydrolase 1	105					arginine catabolic process|citrulline metabolic process|nitric oxide mediated signal transduction		dimethylargininase activity|metal ion binding				0				all cancers(265;0.0318)|Epithelial(280;0.0657)	L-Citrulline(DB00155)	ATGCTTCTTTCATCATGTCAA	0.308													19	58					0	0	0.012319	0	0
COL24A1	255631	broad.mit.edu	37	1	86210408	86210408	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:86210408C>T	uc001dlj.2	-	57	4655	c.4613G>A	c.(4612-4614)CGA>CAA	p.R1538Q	COL24A1_uc001dli.2_Missense_Mutation_p.R653Q|COL24A1_uc010osd.1_Missense_Mutation_p.R838Q|COL24A1_uc001dlk.2_RNA|COL24A1_uc010ose.1_RNA|COL24A1_uc010osf.1_RNA	NM_152890	NP_690850	Q17RW2	COOA1_HUMAN	collagen, type XXIV, alpha 1 precursor	1538	Fibrillar collagen NC1.				cell adhesion	collagen	extracellular matrix structural constituent			ovary(3)|central_nervous_system(1)|skin(1)	5				all cancers(265;0.0627)|Epithelial(280;0.0689)		TGGGTTATCTCGTGTGCCAAG	0.368													27	49					0	0	0.007291	0	0
CLCA2	9635	broad.mit.edu	37	1	86898095	86898095	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:86898095C>T	uc001dlr.3	+	5	790	c.628C>T	c.(628-630)CCT>TCT	p.P210S		NM_006536	NP_006527	Q9UQC9	CLCA2_HUMAN	chloride channel accessory 2 precursor	210	Extracellular (Potential).				cell adhesion	basal plasma membrane|cell junction|extracellular region|integral to plasma membrane	chloride channel activity			ovary(1)|breast(1)|skin(1)	3		Lung NSC(277;0.238)		all cancers(265;0.0233)|Epithelial(280;0.0452)		TGAAAAAGGTCCTTGCCCCCA	0.348													33	78					0	0	0.013726	0	0
CLCA2	9635	broad.mit.edu	37	1	86921097	86921097	+	Silent	SNP	T	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:86921097T>C	uc001dlr.3	+	14	2881	c.2719T>C	c.(2719-2721)TTA>CTA	p.L907L		NM_006536	NP_006527	Q9UQC9	CLCA2_HUMAN	chloride channel accessory 2 precursor	907	Helical; (Potential).				cell adhesion	basal plasma membrane|cell junction|extracellular region|integral to plasma membrane	chloride channel activity			ovary(1)|breast(1)|skin(1)	3		Lung NSC(277;0.238)		all cancers(265;0.0233)|Epithelial(280;0.0452)		GAAAGGAGTTTTAACAGCAAT	0.398													60	106					0	0	0.014410	0	0
CLCA1	1179	broad.mit.edu	37	1	86957012	86957012	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:86957012C>T	uc001dlt.2	+	9	1551	c.1422C>T	c.(1420-1422)GCC>GCT	p.A474A	CLCA1_uc001dls.1_Silent_p.A413A	NM_001285	NP_001276	A8K7I4	CLCA1_HUMAN	chloride channel accessory 1 precursor	474	VWFA.				calcium ion transport	extracellular space|integral to plasma membrane	chloride channel activity			ovary(1)	1		Lung NSC(277;0.239)		all cancers(265;0.0249)|Epithelial(280;0.0476)		CTTTTGGGGCCCTTTCATCAG	0.388													22	47					0	0	0.014323	0	0
CLCA4	22802	broad.mit.edu	37	1	87040246	87040246	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:87040246G>A	uc009wcs.2	+	10	1535	c.1491G>A	c.(1489-1491)CTG>CTA	p.L497L	CLCA4_uc009wct.2_Silent_p.L260L|CLCA4_uc009wcu.2_Silent_p.L317L	NM_012128	NP_036260	Q14CN2	CLCA4_HUMAN	chloride channel accessory 4	497						apical plasma membrane|extracellular region|integral to plasma membrane	chloride channel activity			ovary(2)	2		Lung NSC(277;0.238)		all cancers(265;0.0202)|Epithelial(280;0.0404)		GATTAACACTGAATAGTAATG	0.348													17	47					0	0	0.006122	0	0
SH3GLB1	51100	broad.mit.edu	37	1	87190087	87190087	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:87190087C>T	uc001dlw.2	+	5	895	c.569C>T	c.(568-570)TCA>TTA	p.S190L	SH3GLB1_uc001dlx.2_Missense_Mutation_p.S190L|SH3GLB1_uc001dly.2_Missense_Mutation_p.S190L|SH3GLB1_uc001dlz.2_Missense_Mutation_p.S90L	NM_016009	NP_057093	Q9Y371	SHLB1_HUMAN	SH3-containing protein SH3GLB1	190	BAR.|Potential.				anti-apoptosis|filopodium assembly|signal transduction	Golgi membrane|mitochondrial outer membrane	cytoskeletal adaptor activity|protein homodimerization activity|SH3 domain binding				0		Lung NSC(277;0.209)		all cancers(265;0.0136)|Epithelial(280;0.0414)		ACTAGAAATTCAGTAAGTAAA	0.264													5	13					0	0	0.001168	0	0
RBMXL1	494115	broad.mit.edu	37	1	89449212	89449212	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:89449212G>A	uc009wcx.2	-	3	1014	c.298C>T	c.(298-300)CCA>TCA	p.P100S	CCBL2_uc001dmp.2_Intron|CCBL2_uc001dmq.2_Intron|CCBL2_uc001dmr.2_Intron|RBMXL1_uc001dms.2_Missense_Mutation_p.P100S	NM_001162536	NP_001156008	Q96E39	RBMXL_HUMAN	RNA binding motif protein, X-linked-like 1	100							nucleotide binding|RNA binding				0						CTACTTCTTGGAGGTGGGGGC	0.512													33	64					0	0	0.012213	0	0
GBP1	2633	broad.mit.edu	37	1	89520430	89520430	+	Missense_Mutation	SNP	T	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:89520430T>G	uc001dmx.2	-	10	1820	c.1600A>C	c.(1600-1602)AAG>CAG	p.K534Q		NM_002053	NP_002044	P32455	GBP1_HUMAN	guanylate binding protein 1,	534					interferon-gamma-mediated signaling pathway	plasma membrane	GTP binding|GTPase activity			ovary(1)|skin(1)	2		Lung NSC(277;0.123)		all cancers(265;0.0156)|Epithelial(280;0.0291)		TTCTCCATCTTCTCAGTCAGT	0.433													155	254					0	0	0.014410	0	0
GBP1	2633	broad.mit.edu	37	1	89520832	89520832	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:89520832C>T	uc001dmx.2	-	9	1655	c.1435G>A	c.(1435-1437)GAC>AAC	p.D479N		NM_002053	NP_002044	P32455	GBP1_HUMAN	guanylate binding protein 1,	479					interferon-gamma-mediated signaling pathway	plasma membrane	GTP binding|GTPase activity			ovary(1)|skin(1)	2		Lung NSC(277;0.123)		all cancers(265;0.0156)|Epithelial(280;0.0291)		AGAGTCTGGTCTGTCTGGAGA	0.423													7	18					0	0	0.001855	0	0
GBP2	2634	broad.mit.edu	37	1	89582838	89582838	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:89582838G>A	uc001dmz.1	-	6	976	c.705C>T	c.(703-705)GTC>GTT	p.V235V	GBP2_uc001dmy.1_RNA	NM_004120	NP_004111	P32456	GBP2_HUMAN	guanylate binding protein 2,	235					interferon-gamma-mediated signaling pathway|type I interferon-mediated signaling pathway	plasma membrane	GTP binding|GTPase activity			ovary(1)	1		Lung NSC(277;0.0908)		all cancers(265;0.0151)|Epithelial(280;0.0284)		GCCAATCGAAGACGAAGCACT	0.423													15	41					0	0	0.004007	0	0
GBP5	115362	broad.mit.edu	37	1	89729432	89729432	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:89729432C>T	uc001dnc.2	-	9	1886	c.1349G>A	c.(1348-1350)CGG>CAG	p.R450Q	GBP5_uc001dnd.2_Missense_Mutation_p.R450Q|GBP5_uc001dne.1_Missense_Mutation_p.R450Q	NM_052942	NP_443174	Q96PP8	GBP5_HUMAN	guanylate-binding protein 5	450						plasma membrane	GTP binding|GTPase activity			ovary(1)	1				all cancers(265;0.00784)|Epithelial(280;0.0286)		TATTCCTTTCCGAGGCTCCCG	0.433													35	63					0	0	0.006230	0	0
LRRC8C	84230	broad.mit.edu	37	1	90178523	90178523	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:90178523C>T	uc001dnl.3	+	3	636	c.394C>T	c.(394-396)CTC>TTC	p.L132F		NM_032270	NP_115646	Q8TDW0	LRC8C_HUMAN	leucine rich repeat containing 8 family, member	132	Helical; (Potential).					endoplasmic reticulum membrane|integral to membrane				ovary(3)|skin(3)|pancreas(1)|central_nervous_system(1)	8		all_lung(203;0.126)		all cancers(265;0.00756)|Epithelial(280;0.0313)		TTACCTTGTCCTCATCCATAC	0.443													16	86					0	0	0.003163	0	0
LRRC8D	55144	broad.mit.edu	37	1	90399360	90399360	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:90399360G>A	uc001dnm.2	+	3	1158	c.733G>A	c.(733-735)GGG>AGG	p.G245R	LRRC8D_uc001dnn.2_Missense_Mutation_p.G245R	NM_001134479	NP_001127951	Q7L1W4	LRC8D_HUMAN	leucine rich repeat containing 8 family, member	245						integral to membrane	protein binding			ovary(2)	2		all_lung(203;0.0894)|Lung NSC(277;0.227)		all cancers(265;0.0109)|Epithelial(280;0.0427)		CAGTGATGAAGGGAGCCCCAG	0.458													17	34					0	0	0.007413	0	0
ZNF326	284695	broad.mit.edu	37	1	90484280	90484280	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:90484280C>T	uc001dnq.2	+	9	1250	c.1111C>T	c.(1111-1113)CGT>TGT	p.R371C	ZNF326_uc009wda.1_Missense_Mutation_p.R282C|ZNF326_uc001dnr.2_Missense_Mutation_p.R165C	NM_182976	NP_892021	Q5BKZ1	ZN326_HUMAN	zinc finger protein 326 isoform 1	371					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear matrix	DNA binding			ovary(1)	1		all_lung(203;0.0116)|Lung NSC(277;0.0417)		all cancers(265;0.00728)|Epithelial(280;0.0265)		AACATCTATTCGTAAGCAACA	0.259													26	46					0	0	0.012213	0	0
ABCA4	24	broad.mit.edu	37	1	94508412	94508412	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:94508412C>T	uc001dqh.2	-	22	3337	c.3233G>A	c.(3232-3234)GGA>GAA	p.G1078E		NM_000350	NP_000341	P78363	ABCA4_HUMAN	ATP-binding cassette, sub-family A member 4	1078	Cytoplasmic.|ABC transporter 1.				phototransduction, visible light|visual perception	integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)|skin(4)|central_nervous_system(2)|upper_aerodigestive_tract(1)|breast(1)	12		all_lung(203;0.000757)|Lung NSC(277;0.00335)		all cancers(265;0.00432)|GBM - Glioblastoma multiforme(16;0.00715)|Epithelial(280;0.171)		CTTGGCATCTCCCACAAAGGC	0.557													27	57					0	0	0.006320	0	0
ABCA4	24	broad.mit.edu	37	1	94564427	94564427	+	Missense_Mutation	SNP	A	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:94564427A>T	uc001dqh.2	-	6	795	c.691T>A	c.(691-693)TCC>ACC	p.S231T	ABCA4_uc010otn.1_Missense_Mutation_p.S231T	NM_000350	NP_000341	P78363	ABCA4_HUMAN	ATP-binding cassette, sub-family A member 4	231	Extracellular.				phototransduction, visible light|visual perception	integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)|skin(4)|central_nervous_system(2)|upper_aerodigestive_tract(1)|breast(1)	12		all_lung(203;0.000757)|Lung NSC(277;0.00335)		all cancers(265;0.00432)|GBM - Glioblastoma multiforme(16;0.00715)|Epithelial(280;0.171)		TGGGAGAGGGAGCACAGGGCA	0.602													14	41					0	0	0.002450	0	0
F3	2152	broad.mit.edu	37	1	94997929	94997929	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:94997929C>T	uc001dqr.2	-	5	878	c.699G>A	c.(697-699)AAG>AAA	p.K233K	F3_uc001dqp.2_RNA|F3_uc001dqq.2_Intron|F3_uc001dqs.2_Intron	NM_001993	NP_001984	P13726	TF_HUMAN	coagulation factor III precursor	233	Extracellular (Potential).				activation of caspase activity|activation of plasma proteins involved in acute inflammatory response|anti-apoptosis|blood coagulation, extrinsic pathway|positive regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of platelet-derived growth factor receptor signaling pathway|positive regulation of protein kinase B signaling cascade	extracellular matrix|extracellular space|integral to membrane	cell surface binding|phospholipid binding|protease binding			central_nervous_system(1)	1		all_lung(203;0.00106)|Lung NSC(277;0.00475)		all cancers(265;0.0232)|Epithelial(280;0.121)	Coagulation factor VIIa(DB00036)	TGTCTGTACTCTTCCGGTTAA	0.488													34	67					0	0	0.003271	0	0
DPYD	1806	broad.mit.edu	37	1	98348842	98348842	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:98348842C>T	uc001drv.2	-	2	265	c.128G>A	c.(127-129)AGA>AAA	p.R43K	DPYD_uc010oub.1_Intron|DPYD_uc001drw.2_Missense_Mutation_p.R43K	NM_000110	NP_000101	Q12882	DPYD_HUMAN	dihydropyrimidine dehydrogenase isoform 1	43					'de novo' pyrimidine base biosynthetic process|purine base catabolic process|thymidine catabolic process|thymine catabolic process|UMP biosynthetic process|uracil catabolic process	cytosol	4 iron, 4 sulfur cluster binding|dihydroorotate oxidase activity|dihydropyrimidine dehydrogenase (NADP+) activity|electron carrier activity|flavin adenine dinucleotide binding|metal ion binding|NADP binding|protein homodimerization activity			ovary(3)|skin(3)|breast(2)	8		all_epithelial(167;0.000185)|all_lung(203;0.00318)|Lung NSC(277;0.00994)		Colorectal(170;0.0165)|Epithelial(280;0.0526)|all cancers(265;0.104)|READ - Rectum adenocarcinoma(84;0.171)|Lung(183;0.216)	Capecitabine(DB01101)|Enfuvirtide(DB00109)	ATCAGGATTTCTTTTCCAATG	0.383													12	32					0	0	0.002450	0	0
LPPR4	9890	broad.mit.edu	37	1	99762394	99762394	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:99762394C>T	uc001dse.2	+	3	615	c.509C>T	c.(508-510)TCC>TTC	p.S170F	LPPR4_uc010oue.1_Missense_Mutation_p.S170F	NM_014839	NP_055654	Q7Z2D5	LPPR4_HUMAN	plasticity related gene 1	170							phosphatidate phosphatase activity			ovary(3)	3		all_epithelial(167;3.54e-06)|all_lung(203;0.00139)|Lung NSC(277;0.00202)		Epithelial(280;0.0736)|all cancers(265;0.0975)|COAD - Colon adenocarcinoma(174;0.142)|Lung(183;0.201)|Colorectal(170;0.22)		AACTTCAATTCCTTCCTCAGA	0.378													16	43					0	0	0.007413	0	0
LPPR4	9890	broad.mit.edu	37	1	99767441	99767441	+	Silent	SNP	T	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:99767441T>C	uc001dse.2	+	6	1060	c.954T>C	c.(952-954)ATT>ATC	p.I318I	LPPR4_uc010oue.1_Intron	NM_014839	NP_055654	Q7Z2D5	LPPR4_HUMAN	plasticity related gene 1	318	Helical; (Potential).						phosphatidate phosphatase activity			ovary(3)	3		all_epithelial(167;3.54e-06)|all_lung(203;0.00139)|Lung NSC(277;0.00202)		Epithelial(280;0.0736)|all cancers(265;0.0975)|COAD - Colon adenocarcinoma(174;0.142)|Lung(183;0.201)|Colorectal(170;0.22)		GAGGAGGAATTGCACTGTACT	0.348													21	44					0	0	0.004656	0	0
PALMD	54873	broad.mit.edu	37	1	100154504	100154504	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:100154504G>A	uc001dsg.2	+	7	1131	c.688G>A	c.(688-690)GGC>AGC	p.G230S	PALMD_uc001dsf.2_Missense_Mutation_p.G230S	NM_017734	NP_060204	Q9NP74	PALMD_HUMAN	palmdelphin	230					regulation of cell shape	cytoplasm|membrane				ovary(2)|pancreas(1)	3		all_epithelial(167;0.000813)|all_lung(203;0.0214)|Lung NSC(277;0.0216)		Epithelial(280;0.067)|all cancers(265;0.117)|COAD - Colon adenocarcinoma(174;0.142)|Lung(183;0.201)		AGCATACAATGGCACCGATGG	0.428													39	86					0	0	0.006999	0	0
AGL	178	broad.mit.edu	37	1	100368320	100368320	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:100368320C>T	uc001dsi.1	+	27	4070	c.3670C>T	c.(3670-3672)CCC>TCC	p.P1224S	AGL_uc001dsj.1_Missense_Mutation_p.P1224S|AGL_uc001dsk.1_Missense_Mutation_p.P1224S|AGL_uc001dsl.1_Missense_Mutation_p.P1224S|AGL_uc001dsm.1_Missense_Mutation_p.P1208S|AGL_uc001dsn.1_Missense_Mutation_p.P1207S	NM_000642	NP_000633	P35573	GDE_HUMAN	amylo-1,6-glucosidase,	1224	4-alpha-glucanotransferase.				glucose metabolic process|glycogen biosynthetic process|glycogen catabolic process	cytosol|isoamylase complex|nucleus	4-alpha-glucanotransferase activity|amylo-alpha-1,6-glucosidase activity|cation binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_epithelial(167;2.2e-06)|all_lung(203;0.000295)|Lung NSC(277;0.00131)		Epithelial(280;0.15)|COAD - Colon adenocarcinoma(174;0.151)|Lung(183;0.209)|all cancers(265;0.237)		GAATGCTGGTCCCCAGATAGA	0.388													21	25					0	0	0.010504	0	0
VCAM1	7412	broad.mit.edu	37	1	101185425	101185425	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:101185425G>A	uc001dti.2	+	1	129	c.9G>A	c.(7-9)GGG>GGA	p.G3G	VCAM1_uc001dtj.2_Silent_p.G3G|VCAM1_uc010ouj.1_Silent_p.G3G	NM_001078	NP_001069	P19320	VCAM1_HUMAN	vascular cell adhesion molecule 1 isoform a	3					heterophilic cell-cell adhesion|interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|leukocyte tethering or rolling|membrane to membrane docking|positive regulation of T cell proliferation|regulation of immune response	alpha9-beta1 integrin-vascular cell adhesion molecule-1 complex|apical part of cell|external side of plasma membrane|extracellular space|filopodium|integral to membrane|microvillus|podosome	cell adhesion molecule binding|integrin binding			central_nervous_system(1)	1		all_epithelial(167;3.83e-06)|all_lung(203;0.000485)|Lung NSC(277;0.0011)		Epithelial(280;0.0227)|all cancers(265;0.0276)|COAD - Colon adenocarcinoma(174;0.149)|Colorectal(144;0.169)|Lung(183;0.196)	Carvedilol(DB01136)	AAATGCCTGGGAAGATGGTCG	0.413													10	38					0	0	0.013537	0	0
S1PR1	1901	broad.mit.edu	37	1	101705422	101705422	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:101705422G>A	uc001dud.2	+	2	1396	c.882G>A	c.(880-882)GAG>GAA	p.E294E	S1PR1_uc009weg.2_Silent_p.E294E	NM_001400	NP_001391	P21453	S1PR1_HUMAN	sphingosine-1-phosphate receptor 1	294	Helical; Name=7; (By similarity).				cell adhesion	integral to membrane	lysosphingolipid and lysophosphatidic acid receptor activity			ovary(2)|lung(1)	3						TCAGAGCGGAGTACTTCCTGG	0.562													68	158					0	0	0.014410	0	0
OLFM3	118427	broad.mit.edu	37	1	102269929	102269929	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:102269929G>A	uc001duf.2	-	6	1373	c.1302C>T	c.(1300-1302)TTC>TTT	p.F434F	OLFM3_uc001dug.2_Silent_p.F414F|OLFM3_uc001duh.2_RNA|OLFM3_uc001dui.2_RNA|OLFM3_uc001duj.2_Silent_p.F339F|OLFM3_uc001due.2_RNA	NM_058170	NP_477518	Q96PB7	NOE3_HUMAN	olfactomedin 3	434	Olfactomedin-like.					extracellular region				ovary(2)|skin(1)	3		all_epithelial(167;1.87e-06)|all_lung(203;8.12e-05)|Lung NSC(277;0.000189)		all cancers(265;0.0843)|Epithelial(280;0.0921)|COAD - Colon adenocarcinoma(174;0.145)		ATTGGTTATGGAAGGGAATGT	0.458													57	82					0	0	0.014410	0	0
COL11A1	1301	broad.mit.edu	37	1	103444981	103444982	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:103444981_103444982CC>TT	uc001dul.2	-	32	2884_2885	c.2566_2567GG>AA	c.(2566-2568)GGA>AAA	p.G856K	COL11A1_uc001duk.2_Missense_Mutation_p.G52K|COL11A1_uc001dum.2_Missense_Mutation_p.G868K|COL11A1_uc001dun.2_Missense_Mutation_p.G817K|COL11A1_uc009weh.2_Missense_Mutation_p.G740K	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A	856	Triple-helical region.				collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		CCCAGGGAATCCAGTGGAACCC	0.312													9	23					0	0	0.004672	0	0
AMY2A	279	broad.mit.edu	37	1	104160673	104160673	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:104160673G>A	uc001dut.2	+	2	330	c.266G>A	c.(265-267)GGA>GAA	p.G89E	AMY2A_uc010ouq.1_Missense_Mutation_p.G89E	NM_000699	NP_000690	P04746	AMYP_HUMAN	pancreatic amylase alpha 2A precursor	89					carbohydrate catabolic process|polysaccharide digestion	extracellular space	alpha-amylase activity|calcium ion binding|chloride ion binding			ovary(1)|skin(1)	2		all_epithelial(167;3.05e-05)|all_lung(203;0.000199)|Lung NSC(277;0.000451)		Colorectal(144;0.0654)|all cancers(265;0.0808)|Epithelial(280;0.0921)|Lung(183;0.111)	Acarbose(DB00284)|Bentiromide(DB00522)|Icodextrin(DB00702)|Miglitol(DB00491)|Pancrelipase(DB00085)	ACAAGATCTGGAAATGAAGAT	0.353													48	104					0	0	0.014410	0	0
VAV3	10451	broad.mit.edu	37	1	108313335	108313335	+	Missense_Mutation	SNP	C	T	T	rs140605941		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:108313335C>T	uc001dvk.1	-	6	625	c.571G>A	c.(571-573)GAT>AAT	p.D191N	VAV3_uc010ouw.1_Missense_Mutation_p.D191N|VAV3_uc001dvl.1_Missense_Mutation_p.D15N|VAV3_uc010oux.1_Missense_Mutation_p.D191N	NM_006113	NP_006104	Q9UKW4	VAV3_HUMAN	vav 3 guanine nucleotide exchange factor isoform	191					angiogenesis|apoptosis|B cell receptor signaling pathway|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of B cell proliferation|regulation of Rho protein signal transduction|response to DNA damage stimulus|response to drug|small GTPase mediated signal transduction	cytosol	GTPase activator activity|metal ion binding|SH3/SH2 adaptor activity			ovary(5)|lung(2)|breast(2)	9		all_epithelial(167;5.38e-05)|all_lung(203;0.000314)|Lung NSC(277;0.000594)		Colorectal(144;0.0331)|Lung(183;0.128)|Epithelial(280;0.204)		CTTCGTATATCATTTTCTGGA	0.294													44	76					0	0	0.014410	0	0
KIAA1324	57535	broad.mit.edu	37	1	109743402	109743403	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:109743402_109743403GG>AA	uc001dwq.2	+	22	2989_2990	c.2853_2854GG>AA	c.(2851-2856)AAGGAC>AAAAAC	p.D952N	KIAA1324_uc009wex.1_Missense_Mutation_p.D902N|KIAA1324_uc009wey.2_Missense_Mutation_p.D865N|KIAA1324_uc010ovg.1_Missense_Mutation_p.D850N|KIAA1324_uc001dwr.2_Missense_Mutation_p.D602N	NM_020775	NP_065826	Q6UXG2	K1324_HUMAN	hypothetical protein LOC57535 precursor	952	Cytoplasmic (Potential).				macroautophagy|positive regulation of vacuole organization|regulation of apoptosis	integral to plasma membrane				ovary(2)|haematopoietic_and_lymphoid_tissue(1)|breast(1)|skin(1)	5		all_epithelial(167;0.000102)|all_lung(203;0.000323)|Lung NSC(277;0.00063)		Colorectal(144;0.0188)|Lung(183;0.0527)|COAD - Colon adenocarcinoma(174;0.14)|Epithelial(280;0.21)|all cancers(265;0.249)		CTACTCTCAAGGACTGTGACCT	0.485											OREG0013630	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	159	336					0	0	0.004672	0	0
ATXN7L2	127002	broad.mit.edu	37	1	110029767	110029767	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:110029767C>T	uc001dxr.2	+	4	452	c.437C>T	c.(436-438)TCC>TTC	p.S146F	ATXN7L2_uc001dxs.2_5'Flank	NM_153340	NP_699171	Q5T6C5	AT7L2_HUMAN	ataxin 7-like 2	146										ovary(2)	2		all_epithelial(167;0.00197)|all_lung(203;0.00291)|Lung NSC(277;0.00453)		Colorectal(144;0.0129)|Lung(183;0.0426)|Epithelial(280;0.0675)|READ - Rectum adenocarcinoma(129;0.0693)|all cancers(265;0.071)|LUSC - Lung squamous cell carcinoma(189;0.228)		AAAACCTCCTCCAGGGAGAAG	0.617													126	261					0	0	0.014410	0	0
GSTM2	2946	broad.mit.edu	37	1	110212119	110212119	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:110212119C>T	uc001dyi.2	+	5	600	c.286C>T	c.(286-288)CGC>TGC	p.R96C	GSTM2_uc001dyj.2_Missense_Mutation_p.R96C|GSTM2_uc010ovt.1_Missense_Mutation_p.R96C|GSTM2_uc009wfk.2_RNA	NM_000848	NP_000839	P28161	GSTM2_HUMAN	glutathione S-transferase mu 2 isoform 1	96	GST C-terminal.				glutathione metabolic process|xenobiotic catabolic process	cytoplasm	glutathione transferase activity				0		all_epithelial(167;2.5e-05)|all_lung(203;0.000135)|Lung NSC(277;0.000269)|Breast(1374;0.244)		all cancers(265;0.0122)|Colorectal(144;0.0129)|Epithelial(280;0.0146)|Lung(183;0.0422)|COAD - Colon adenocarcinoma(174;0.047)|LUSC - Lung squamous cell carcinoma(189;0.227)	Glutathione(DB00143)	GGAGCAGATTCGCGAAGACAT	0.562													17	29					0	0	0.006122	0	0
GSTM2	2946	broad.mit.edu	37	1	110212149	110212149	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:110212149G>A	uc001dyi.2	+	5	630	c.316G>A	c.(316-318)GAC>AAC	p.D106N	GSTM2_uc001dyj.2_Missense_Mutation_p.D106N|GSTM2_uc010ovt.1_Missense_Mutation_p.D106N|GSTM2_uc009wfk.2_RNA	NM_000848	NP_000839	P28161	GSTM2_HUMAN	glutathione S-transferase mu 2 isoform 1	106	GST C-terminal.				glutathione metabolic process|xenobiotic catabolic process	cytoplasm	glutathione transferase activity				0		all_epithelial(167;2.5e-05)|all_lung(203;0.000135)|Lung NSC(277;0.000269)|Breast(1374;0.244)		all cancers(265;0.0122)|Colorectal(144;0.0129)|Epithelial(280;0.0146)|Lung(183;0.0422)|COAD - Colon adenocarcinoma(174;0.047)|LUSC - Lung squamous cell carcinoma(189;0.227)	Glutathione(DB00143)	CCAGTTTATGGACAGCCGTAT	0.542													13	18					0	0	0.002450	0	0
GSTM3	2947	broad.mit.edu	37	1	110280150	110280150	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:110280150G>A	uc001dyo.2	-	8	818	c.508C>T	c.(508-510)CAG>TAG	p.Q170*	GSTM3_uc001dyp.2_Nonsense_Mutation_p.Q167*|GSTM3_uc010ovv.1_Nonsense_Mutation_p.Q170*	NM_000849	NP_000840	P21266	GSTM3_HUMAN	glutathione S-transferase mu 3	170	GST C-terminal.				establishment of blood-nerve barrier|glutathione metabolic process|response to estrogen stimulus	cytoplasm	glutathione transferase activity|identical protein binding				0		all_epithelial(167;1.95e-05)|all_lung(203;0.000135)|Lung NSC(277;0.000269)		Colorectal(144;0.0339)|Lung(183;0.0426)|all cancers(265;0.113)|Epithelial(280;0.125)|COAD - Colon adenocarcinoma(174;0.134)|LUSC - Lung squamous cell carcinoma(189;0.228)	Glutathione(DB00143)	ATACGGTTCTGATCCAAGATA	0.438													5	78					0	0	0.001984	0	0
EPS8L3	79574	broad.mit.edu	37	1	110294795	110294795	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:110294795C>T	uc001dyr.1	-	15	1401	c.1256G>A	c.(1255-1257)GGG>GAG	p.G419E	EPS8L3_uc001dys.1_Intron|EPS8L3_uc001dyq.1_Missense_Mutation_p.G420E|EPS8L3_uc009wfm.1_Intron|EPS8L3_uc009wfn.1_Intron	NM_133181	NP_573444	Q8TE67	ES8L3_HUMAN	epidermal growth factor receptor pathway	419						cytoplasm	protein binding			ovary(2)|skin(1)	3		all_epithelial(167;1.95e-05)|all_lung(203;0.000135)|Lung NSC(277;0.000269)		Lung(183;0.0245)|Colorectal(144;0.0365)|all cancers(265;0.103)|Epithelial(280;0.109)|LUSC - Lung squamous cell carcinoma(189;0.137)|COAD - Colon adenocarcinoma(174;0.141)		TGAGGTGCTCCCTAACCTATG	0.582													75	134					0	0	0.014410	0	0
UBL4B	164153	broad.mit.edu	37	1	110655500	110655500	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:110655500G>A	uc001dzc.2	+	1	439	c.344G>A	c.(343-345)AGG>AAG	p.R115K		NM_203412	NP_981957	Q8N7F7	UBL4B_HUMAN	ubiquitin-like 4B	115						cytoplasm				ovary(1)	1		all_cancers(81;1.14e-05)|all_epithelial(167;3.23e-06)|all_lung(203;0.000116)|Lung NSC(277;0.000233)		Lung(183;0.0236)|all cancers(265;0.0823)|Epithelial(280;0.0917)|Colorectal(144;0.109)|LUSC - Lung squamous cell carcinoma(189;0.134)		CAGCTGCTAAGGCAGGAGCAC	0.637													6	31					0	0	0.001984	0	0
KCNA10	3744	broad.mit.edu	37	1	111061129	111061129	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:111061129C>T	uc001dzt.1	-	1	669	c.281G>A	c.(280-282)GGG>GAG	p.G94E		NM_005549	NP_005540	Q16322	KCA10_HUMAN	potassium voltage-gated channel, shaker-related	94						voltage-gated potassium channel complex	intracellular cyclic nucleotide activated cation channel activity|voltage-gated potassium channel activity			ovary(3)|large_intestine(1)	4		all_cancers(81;4.57e-06)|all_epithelial(167;1.52e-05)|all_lung(203;0.000152)|Lung NSC(277;0.000301)		Lung(183;0.0238)|all cancers(265;0.0874)|Colorectal(144;0.103)|Epithelial(280;0.116)|LUSC - Lung squamous cell carcinoma(189;0.134)		AAATCTCAGCCCAGCAATGTT	0.532													31	68					0	0	0.012213	0	0
CHI3L2	1117	broad.mit.edu	37	1	111770380	111770380	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:111770380C>T	uc001eam.2	+	1	100	c.29C>T	c.(28-30)TCT>TTT	p.S10F	CHI3L2_uc001ean.2_Missense_Mutation_p.S10F|CHI3L2_uc001eao.2_5'Flank|CHI3L2_uc009wga.2_5'Flank	NM_004000	NP_003991	Q15782	CH3L2_HUMAN	chitinase 3-like 2 isoform a	10					chitin catabolic process	extracellular space	cation binding|chitinase activity			central_nervous_system(1)	1		all_cancers(81;1.89e-05)|all_epithelial(167;7.36e-06)|all_lung(203;0.00018)|Lung NSC(277;0.000359)		Lung(183;0.0171)|Colorectal(144;0.0387)|all cancers(265;0.0464)|LUSC - Lung squamous cell carcinoma(189;0.0872)|Epithelial(280;0.0994)|COAD - Colon adenocarcinoma(174;0.141)		GACCAGAAGTCTCTCTGGGCA	0.483													14	46					0	0	0.004007	0	0
ADORA3	140	broad.mit.edu	37	1	112026336	112026336	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:112026336C>T	uc001ebf.2	-	6	1784	c.1017G>A	c.(1015-1017)AAG>AAA	p.K339K	ADORA3_uc001ebg.3_Silent_p.K258K	NM_020683	NP_065734	P33765	AA3R_HUMAN	adenosine A3 receptor isoform 1	Error:Variant_position_missing_in_P33765_after_alignment					activation of adenylate cyclase activity|inflammatory response|regulation of heart contraction	integral to plasma membrane	adenosine receptor activity, G-protein coupled			ovary(2)|large_intestine(1)|skin(1)	4		all_cancers(81;1.63e-06)|all_epithelial(167;5.01e-06)|all_lung(203;8.02e-05)|Lung NSC(277;0.000156)		all cancers(265;0.0185)|Colorectal(144;0.0186)|Lung(183;0.0238)|COAD - Colon adenocarcinoma(174;0.0644)|Epithelial(280;0.0872)|LUSC - Lung squamous cell carcinoma(189;0.134)	Adenosine(DB00640)|Aminophylline(DB01223)	GAGCCATTTCCTTTGGAGTCA	0.428													9	19					0	0	0.008291	0	0
RAP1A	5906	broad.mit.edu	37	1	112240080	112240080	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:112240080C>T	uc001ebi.2	+	4	248	c.144C>T	c.(142-144)TGC>TGT	p.C48C	RAP1A_uc001ebk.2_Silent_p.C48C|RAP1A_uc001ebl.2_Silent_p.C48C|RAP1A_uc001ebm.2_RNA	NM_002884	NP_002875	P62834	RAP1A_HUMAN	RAP1A, member of RAS oncogene family precursor	48					activation of MAPKK activity|blood coagulation|energy reserve metabolic process|nerve growth factor receptor signaling pathway|regulation of insulin secretion	cytosol|plasma membrane	GTP binding|GTPase activity				0		all_cancers(81;6.79e-06)|all_epithelial(167;2.42e-05)|all_lung(203;0.000105)|Lung NSC(277;0.00021)		Lung(183;0.0183)|Colorectal(144;0.0418)|LUSC - Lung squamous cell carcinoma(189;0.0966)|all cancers(265;0.098)|Epithelial(280;0.0981)|COAD - Colon adenocarcinoma(174;0.141)		AAGTCGATTGCCAACAGTGTA	0.373													10	72					0	0	0.010729	0	0
CTTNBP2NL	55917	broad.mit.edu	37	1	112999697	112999697	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:112999697C>T	uc001ebx.2	+	6	1811	c.1583C>T	c.(1582-1584)CCC>CTC	p.P528L	CTTNBP2NL_uc001ebz.2_RNA	NM_018704	NP_061174	Q9P2B4	CT2NL_HUMAN	CTTNBP2 N-terminal like	528						actin cytoskeleton	protein binding			central_nervous_system(2)|ovary(1)	3		all_cancers(81;0.00064)|all_epithelial(167;0.000415)|all_lung(203;0.00045)|Lung NSC(69;0.000705)		Lung(183;0.0234)|all cancers(265;0.0246)|Epithelial(280;0.0342)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		AACAGCTCTCCCTTTGGCACA	0.552													28	44					0	0	0.009535	0	0
RSBN1	54665	broad.mit.edu	37	1	114354713	114354713	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:114354713G>A	uc001edq.2	-	1	358	c.322C>T	c.(322-324)CCT>TCT	p.P108S	RSBN1_uc001edr.2_RNA	NM_018364	NP_060834	Q5VWQ0	RSBN1_HUMAN	round spermatid basic protein 1	108	Pro-rich.					nucleus				ovary(1)	1	Lung SC(450;0.184)	all_cancers(81;3.78e-08)|all_epithelial(167;5.56e-08)|all_lung(203;6.97e-06)|Lung NSC(69;1.18e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		GGAGCGAGAGGGGGCTCCTGG	0.697													5	13					0	0	0.001984	0	0
PTPN22	26191	broad.mit.edu	37	1	114372236	114372236	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:114372236C>T	uc001eds.2	-	18	2358	c.2228G>A	c.(2227-2229)GGA>GAA	p.G743E	PTPN22_uc009wgq.2_Missense_Mutation_p.G688E|PTPN22_uc010owo.1_Missense_Mutation_p.G499E|PTPN22_uc001edt.2_Intron|PTPN22_uc009wgr.2_Missense_Mutation_p.G743E|PTPN22_uc009wgs.2_Missense_Mutation_p.G616E	NM_015967	NP_057051	Q9Y2R2	PTN22_HUMAN	protein tyrosine phosphatase, non-receptor type	743					negative regulation of T cell activation|negative regulation of T cell receptor signaling pathway|phosphoanandamide dephosphorylation|regulation of B cell receptor signaling pathway|regulation of natural killer cell proliferation|T cell differentiation	internal side of plasma membrane|nucleus|perinuclear region of cytoplasm	kinase binding|protein tyrosine phosphatase activity|SH3 domain binding			kidney(2)|lung(1)|skin(1)	4	Lung SC(450;0.184)	all_cancers(81;1.93e-08)|all_epithelial(167;4.37e-08)|all_lung(203;5.22e-06)|Lung NSC(69;8.94e-06)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		GAAACTTTTTCCAGGAGTCTT	0.393													30	76					0	0	0.008361	0	0
SYT6	148281	broad.mit.edu	37	1	114640423	114640423	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:114640423C>T	uc001eev.2	-	6	1436	c.1186G>A	c.(1186-1188)GAG>AAG	p.E396K	SYT6_uc001eeu.2_Missense_Mutation_p.E41K	NM_205848	NP_995320	Q5T7P8	SYT6_HUMAN	synaptotagmin VI	481	Cytoplasmic (Potential).				acrosomal vesicle exocytosis	cell junction|cytosol|integral to membrane|perinuclear endoplasmic reticulum|peripheral to membrane of membrane fraction|synaptic vesicle membrane	clathrin binding|metal ion binding|protein homodimerization activity|syntaxin binding|transporter activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5	Lung SC(450;0.184)	all_cancers(81;4.41e-08)|all_epithelial(167;5.18e-08)|all_lung(203;1.58e-05)|Lung NSC(69;2.82e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		GCCAGCATCTCGTTCCAGTGG	0.572													28	46					0	0	0.009535	0	0
DENND2C	163259	broad.mit.edu	37	1	115141952	115141952	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:115141952G>A	uc001efd.1	-	16	2928	c.2226C>T	c.(2224-2226)TTC>TTT	p.F742F	DENND2C_uc001eez.2_Intron|DENND2C_uc001efc.1_Silent_p.F685F	NM_198459	NP_940861	Q68D51	DEN2C_HUMAN	DENN/MADD domain containing 2C	742	DENN.									skin(3)	3	all_epithelial(7;9.54e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		TTCCAATAAGGAATGGTGTAG	0.468													38	71					0	0	0.009718	0	0
DENND2C	163259	broad.mit.edu	37	1	115166153	115166153	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:115166153C>T	uc001efd.1	-	5	1620	c.918G>A	c.(916-918)GAG>GAA	p.E306E	DENND2C_uc001eez.2_RNA|DENND2C_uc001efc.1_Silent_p.E306E	NM_198459	NP_940861	Q68D51	DEN2C_HUMAN	DENN/MADD domain containing 2C	306										skin(3)	3	all_epithelial(7;9.54e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		AGATATTGTCCTCAGACTGTG	0.353													6	38					0	0	0.001984	0	0
AMPD1	270	broad.mit.edu	37	1	115215745	115215745	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:115215745G>A	uc001efe.1	-	16	2318	c.2234C>T	c.(2233-2235)TCA>TTA	p.S745L	DENND2C_uc001eez.2_5'Flank|AMPD1_uc001eff.1_Missense_Mutation_p.S741L	NM_000036	NP_000027	P23109	AMPD1_HUMAN	adenosine monophosphate deaminase 1 (isoform M)	745					purine base metabolic process|purine ribonucleoside monophosphate biosynthetic process|purine-containing compound salvage	cytosol	AMP deaminase activity|metal ion binding			ovary(2)|large_intestine(1)|skin(1)	4	all_epithelial(7;7.83e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)	Adenosine monophosphate(DB00131)	TTATTCTGTTGATTTAAGACC	0.284													6	13					0	0	0.001168	0	0
AMPD1	270	broad.mit.edu	37	1	115220031	115220031	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:115220031G>A	uc001efe.1	-	10	1413	c.1329C>T	c.(1327-1329)TTC>TTT	p.F443F	AMPD1_uc001eff.1_Silent_p.F439F	NM_000036	NP_000027	P23109	AMPD1_HUMAN	adenosine monophosphate deaminase 1 (isoform M)	443					purine base metabolic process|purine ribonucleoside monophosphate biosynthetic process|purine-containing compound salvage	cytosol	AMP deaminase activity|metal ion binding			ovary(2)|large_intestine(1)|skin(1)	4	all_epithelial(7;7.83e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)	Adenosine monophosphate(DB00131)	GATTGCAGACGAACCAGGAGG	0.562													12	72					0	0	0.010729	0	0
AMPD1	270	broad.mit.edu	37	1	115221145	115221145	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:115221145C>T	uc001efe.1	-	8	985	c.901G>A	c.(901-903)GAC>AAC	p.D301N	AMPD1_uc001eff.1_Missense_Mutation_p.D297N	NM_000036	NP_000027	P23109	AMPD1_HUMAN	adenosine monophosphate deaminase 1 (isoform M)	301					purine base metabolic process|purine ribonucleoside monophosphate biosynthetic process|purine-containing compound salvage	cytosol	AMP deaminase activity|metal ion binding			ovary(2)|large_intestine(1)|skin(1)	4	all_epithelial(7;7.83e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)	Adenosine monophosphate(DB00131)	ATATGGGTGTCCACCTGTATG	0.413													12	19					0	0	0.010729	0	0
SYCP1	6847	broad.mit.edu	37	1	115420732	115420732	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:115420732C>T	uc001efr.2	+	12	1028	c.819C>T	c.(817-819)ATC>ATT	p.I273I	SYCP1_uc010owt.1_RNA|SYCP1_uc001efq.2_Silent_p.I273I|SYCP1_uc009wgw.2_Silent_p.I273I	NM_003176	NP_003167	Q15431	SYCP1_HUMAN	synaptonemal complex protein 1	273	Potential.				cell division|reciprocal meiotic recombination|spermatogenesis|synaptonemal complex assembly		DNA binding			skin(1)	1	Lung SC(450;0.211)	all_cancers(81;8.65e-08)|all_epithelial(167;3.32e-07)|all_lung(203;6.55e-06)|Lung NSC(69;1.11e-05)|Acute lymphoblastic leukemia(138;0.221)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		TACTATTGATCCAAATCACTG	0.224													9	27					0	0	0.004482	0	0
SYCP1	6847	broad.mit.edu	37	1	115487549	115487549	+	Silent	SNP	T	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:115487549T>C	uc001efr.2	+	25	2309	c.2100T>C	c.(2098-2100)GAT>GAC	p.D700D	SYCP1_uc010owt.1_RNA|SYCP1_uc001efq.2_Silent_p.D700D|SYCP1_uc009wgw.2_Silent_p.D700D	NM_003176	NP_003167	Q15431	SYCP1_HUMAN	synaptonemal complex protein 1	700	Potential.				cell division|reciprocal meiotic recombination|spermatogenesis|synaptonemal complex assembly		DNA binding			skin(1)	1	Lung SC(450;0.211)	all_cancers(81;8.65e-08)|all_epithelial(167;3.32e-07)|all_lung(203;6.55e-06)|Lung NSC(69;1.11e-05)|Acute lymphoblastic leukemia(138;0.221)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		AAGAAATTGATAAGCGATGTC	0.264													9	21					0	0	0.001855	0	0
TSPAN2	10100	broad.mit.edu	37	1	115593133	115593133	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:115593133C>T	uc001eft.2	-	8	706	c.644G>A	c.(643-645)CGA>CAA	p.R215Q		NM_005725	NP_005716	O60636	TSN2_HUMAN	tetraspan 2	215	Cytoplasmic (Potential).					integral to membrane					0	Lung SC(450;0.211)	all_cancers(81;2.9e-07)|all_epithelial(167;1.42e-06)|all_lung(203;6.72e-06)|Lung NSC(69;1.13e-05)|Acute lymphoblastic leukemia(138;0.191)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)|all cancers(265;0.159)|Epithelial(280;0.179)		TCGTGAGTTTCGTATCGCACA	0.398													6	40					0	0	0.001984	0	0
TSPAN2	10100	broad.mit.edu	37	1	115615558	115615558	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:115615558G>A	uc001eft.2	-	2	202	c.140C>T	c.(139-141)TCA>TTA	p.S47L		NM_005725	NP_005716	O60636	TSN2_HUMAN	tetraspan 2	47	Extracellular (Potential).					integral to membrane					0	Lung SC(450;0.211)	all_cancers(81;2.9e-07)|all_epithelial(167;1.42e-06)|all_lung(203;6.72e-06)|Lung NSC(69;1.13e-05)|Acute lymphoblastic leukemia(138;0.191)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)|all cancers(265;0.159)|Epithelial(280;0.179)		CTTGTCCTCTGATGATAACTC	0.498													7	58					0	0	0.006214	0	0
NGF	4803	broad.mit.edu	37	1	115828826	115828826	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:115828826C>T	uc001efu.1	-	3	760	c.591G>A	c.(589-591)TGG>TGA	p.W197*		NM_002506	NP_002497	P01138	NGF_HUMAN	nerve growth factor, beta polypeptide precursor	197					activation of MAPKK activity|activation of phospholipase C activity|anti-apoptosis|apoptosis|induction of apoptosis by extracellular signals|negative regulation of cell cycle|nerve growth factor processing|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|Ras protein signal transduction	endosome|Golgi lumen	growth factor activity|nerve growth factor receptor binding			upper_aerodigestive_tract(2)	2	Lung SC(450;0.211)	all_cancers(81;1.07e-06)|all_epithelial(167;4.43e-06)|all_lung(203;2.86e-05)|Lung NSC(69;4.99e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)|all cancers(265;0.159)|Epithelial(280;0.179)	Clenbuterol(DB01407)	AATATGAGTTCCAGTGCTTTG	0.512													17	52					0	0	0.006122	0	0
CASQ2	845	broad.mit.edu	37	1	116311110	116311110	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:116311110C>T	uc001efx.3	-	1	317	c.53G>A	c.(52-54)AGG>AAG	p.R18K	CASQ2_uc010owu.1_Missense_Mutation_p.R18K	NM_001232	NP_001223	O14958	CASQ2_HUMAN	cardiac calsequestrin 2 precursor	18					heart development|striated muscle contraction	sarcoplasmic reticulum lumen	calcium ion binding			skin(1)	1	Lung SC(450;0.211)	all_cancers(81;1.25e-06)|all_epithelial(167;1.02e-06)|all_lung(203;8.03e-06)|Lung NSC(69;5.01e-05)		Lung(183;0.0171)|Colorectal(144;0.0686)|LUSC - Lung squamous cell carcinoma(189;0.0903)|all cancers(265;0.108)|COAD - Colon adenocarcinoma(174;0.111)|Epithelial(280;0.12)		CTCTTCTGCCCTGCAAGAGGA	0.408													20	27					0	0	0.007413	0	0
SLC22A15	55356	broad.mit.edu	37	1	116577854	116577854	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:116577854G>A	uc001egb.3	+	7	1121	c.991G>A	c.(991-993)GAT>AAT	p.D331N		NM_018420	NP_060890	Q8IZD6	S22AF_HUMAN	solute carrier family 22, member 15	331					ion transport	integral to membrane	transmembrane transporter activity			large_intestine(2)	2	Lung SC(450;0.184)	all_cancers(81;3.17e-06)|all_epithelial(167;2.32e-06)|all_lung(203;9.81e-06)|Lung NSC(69;5.94e-05)		Lung(183;0.0171)|Colorectal(144;0.0686)|LUSC - Lung squamous cell carcinoma(189;0.0903)|all cancers(265;0.108)|COAD - Colon adenocarcinoma(174;0.111)|Epithelial(280;0.12)		GAGTGCGGGTGATCTAGGTGG	0.453													23	51					0	0	0.004656	0	0
CD2	914	broad.mit.edu	37	1	117297327	117297327	+	Missense_Mutation	SNP	C	T	T	rs142374557	byFrequency	TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:117297327C>T	uc001egu.3	+	2	165	c.136C>T	c.(136-138)CCT>TCT	p.P46S	CD2_uc010owz.1_Missense_Mutation_p.P46S|CD2_uc010oxa.1_Missense_Mutation_p.P46S	NM_001767	NP_001758	P06729	CD2_HUMAN	CD2 molecule precursor	46	Extracellular (Potential).|Ig-like V-type.				blood coagulation|cell surface receptor linked signaling pathway|cell-cell adhesion|induction of apoptosis|leukocyte migration|membrane raft polarization|natural killer cell activation|positive regulation of myeloid dendritic cell activation|regulation of T cell differentiation|T cell activation	integral to plasma membrane	receptor activity			breast(1)	1	Lung SC(450;0.225)	all_cancers(81;3.15e-06)|Acute lymphoblastic leukemia(138;1.7e-08)|all_epithelial(167;8.38e-07)|all_lung(203;3.37e-06)|Lung NSC(69;2.31e-05)		Epithelial(280;6.71e-26)|OV - Ovarian serous cystadenocarcinoma(397;4.74e-24)|all cancers(265;1.93e-22)|Lung(183;0.0543)|Kidney(133;0.0813)|Colorectal(144;0.174)|KIRC - Kidney renal clear cell carcinoma(1967;0.176)|LUSC - Lung squamous cell carcinoma(189;0.189)|BRCA - Breast invasive adenocarcinoma(282;0.201)	Alefacept(DB00092)	CTTGGACATTCCTAGTTTTCA	0.378													21	39					0	0	0.014323	0	0
CD2	914	broad.mit.edu	37	1	117307147	117307147	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:117307147G>A	uc001egu.3	+	4	684	c.655G>A	c.(655-657)GGA>AGA	p.G219R	CD2_uc010owz.1_Missense_Mutation_p.G219R|CD2_uc010oxa.1_Silent_p.E161E	NM_001767	NP_001758	P06729	CD2_HUMAN	CD2 molecule precursor	219	Helical; (Potential).				blood coagulation|cell surface receptor linked signaling pathway|cell-cell adhesion|induction of apoptosis|leukocyte migration|membrane raft polarization|natural killer cell activation|positive regulation of myeloid dendritic cell activation|regulation of T cell differentiation|T cell activation	integral to plasma membrane	receptor activity			breast(1)	1	Lung SC(450;0.225)	all_cancers(81;3.15e-06)|Acute lymphoblastic leukemia(138;1.7e-08)|all_epithelial(167;8.38e-07)|all_lung(203;3.37e-06)|Lung NSC(69;2.31e-05)		Epithelial(280;6.71e-26)|OV - Ovarian serous cystadenocarcinoma(397;4.74e-24)|all cancers(265;1.93e-22)|Lung(183;0.0543)|Kidney(133;0.0813)|Colorectal(144;0.174)|KIRC - Kidney renal clear cell carcinoma(1967;0.176)|LUSC - Lung squamous cell carcinoma(189;0.189)|BRCA - Breast invasive adenocarcinoma(282;0.201)	Alefacept(DB00092)	CATATGTGGAGGAGGCAGCCT	0.493													24	39					0	0	0.008361	0	0
CD2	914	broad.mit.edu	37	1	117311250	117311250	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:117311250G>A	uc001egu.3	+	5	930	c.901G>A	c.(901-903)GGA>AGA	p.G301R		NM_001767	NP_001758	P06729	CD2_HUMAN	CD2 molecule precursor	301	Cytoplasmic (Potential).|Pro-rich.				blood coagulation|cell surface receptor linked signaling pathway|cell-cell adhesion|induction of apoptosis|leukocyte migration|membrane raft polarization|natural killer cell activation|positive regulation of myeloid dendritic cell activation|regulation of T cell differentiation|T cell activation	integral to plasma membrane	receptor activity			breast(1)	1	Lung SC(450;0.225)	all_cancers(81;3.15e-06)|Acute lymphoblastic leukemia(138;1.7e-08)|all_epithelial(167;8.38e-07)|all_lung(203;3.37e-06)|Lung NSC(69;2.31e-05)		Epithelial(280;6.71e-26)|OV - Ovarian serous cystadenocarcinoma(397;4.74e-24)|all cancers(265;1.93e-22)|Lung(183;0.0543)|Kidney(133;0.0813)|Colorectal(144;0.174)|KIRC - Kidney renal clear cell carcinoma(1967;0.176)|LUSC - Lung squamous cell carcinoma(189;0.189)|BRCA - Breast invasive adenocarcinoma(282;0.201)	Alefacept(DB00092)	CCCGCCTCCTGGACACCGTGT	0.602													18	54					0	0	0.004990	0	0
CD2	914	broad.mit.edu	37	1	117311293	117311293	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:117311293C>T	uc001egu.3	+	5	973	c.944C>T	c.(943-945)CCG>CTG	p.P315L		NM_001767	NP_001758	P06729	CD2_HUMAN	CD2 molecule precursor	315	Cytoplasmic (Potential).|Pro-rich.				blood coagulation|cell surface receptor linked signaling pathway|cell-cell adhesion|induction of apoptosis|leukocyte migration|membrane raft polarization|natural killer cell activation|positive regulation of myeloid dendritic cell activation|regulation of T cell differentiation|T cell activation	integral to plasma membrane	receptor activity			breast(1)	1	Lung SC(450;0.225)	all_cancers(81;3.15e-06)|Acute lymphoblastic leukemia(138;1.7e-08)|all_epithelial(167;8.38e-07)|all_lung(203;3.37e-06)|Lung NSC(69;2.31e-05)		Epithelial(280;6.71e-26)|OV - Ovarian serous cystadenocarcinoma(397;4.74e-24)|all cancers(265;1.93e-22)|Lung(183;0.0543)|Kidney(133;0.0813)|Colorectal(144;0.174)|KIRC - Kidney renal clear cell carcinoma(1967;0.176)|LUSC - Lung squamous cell carcinoma(189;0.189)|BRCA - Breast invasive adenocarcinoma(282;0.201)	Alefacept(DB00092)	CCTCCTGCTCCGTCGGGCACA	0.622													25	70					0	0	0.002780	0	0
PTGFRN	5738	broad.mit.edu	37	1	117503968	117503968	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:117503968G>A	uc001egv.1	+	5	1454	c.1317G>A	c.(1315-1317)GCG>GCA	p.A439A		NM_020440	NP_065173	Q9P2B2	FPRP_HUMAN	prostaglandin F2 receptor negative regulator	439	Extracellular (Potential).|Ig-like C2-type 4.					endoplasmic reticulum membrane|Golgi apparatus|integral to membrane	protein binding			liver(1)	1	Lung SC(450;0.225)	all_cancers(81;0.00104)|all_lung(203;8.97e-05)|all_epithelial(167;0.000139)|Lung NSC(69;0.000446)		Lung(183;0.0704)|LUSC - Lung squamous cell carcinoma(189;0.227)|Colorectal(144;0.248)		GTGGGGAGGCGAATGTCCGAT	0.602													17	51					0	0	0.004007	0	0
CD101	9398	broad.mit.edu	37	1	117554458	117554458	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:117554458G>A	uc010oxb.1	+	3	769	c.711G>A	c.(709-711)GAG>GAA	p.E237E	CD101_uc009whd.2_Silent_p.E237E|CD101_uc010oxc.1_Silent_p.E237E|CD101_uc010oxd.1_Silent_p.E175E	NM_004258	NP_004249	Q93033	IGSF2_HUMAN	immunoglobulin superfamily, member 2 precursor	237	Extracellular (Potential).|Ig-like C2-type 2.				cell surface receptor linked signaling pathway	integral to membrane|plasma membrane	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4						TGTCCATAGAGAGGCTCCAGT	0.498													12	23					0	0	0.001855	0	0
FAM46C	54855	broad.mit.edu	37	1	118166142	118166142	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:118166142G>A	uc001ehe.2	+	2	851	c.652G>A	c.(652-654)GAC>AAC	p.D218N		NM_017709	NP_060179	Q5VWP2	FA46C_HUMAN	hypothetical protein LOC54855	218											0	Lung SC(450;0.225)	all_cancers(81;0.000101)|all_lung(203;3.4e-06)|all_epithelial(167;4.98e-06)|Lung NSC(69;2.33e-05)		Lung(183;0.0576)|LUSC - Lung squamous cell carcinoma(189;0.192)|Colorectal(144;0.247)		CATGTACGGGGACTTTGAGGA	0.488										Multiple Myeloma(3;1.13e-06)			23	129					0	0	0.007291	0	0
WDR3	10885	broad.mit.edu	37	1	118497969	118497970	+	Missense_Mutation	DNP	GG	AA	AA	rs148919618		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:118497969_118497970GG>AA	uc010oxe.1	+	24	2507_2508	c.2441_2442GG>AA	c.(2440-2442)GGG>GAA	p.G814E	WDR3_uc001ehi.2_Intron|SPAG17_uc001ehk.2_Intron	NM_006784	NP_006775	Q9UNX4	WDR3_HUMAN	WD repeat-containing protein 3	814						nuclear membrane|nucleolus				upper_aerodigestive_tract(1)	1	Esophageal squamous(2;0.162)	all_cancers(81;2.72e-05)|Acute lymphoblastic leukemia(138;1e-08)|all_epithelial(167;4.4e-07)|all_lung(203;1.7e-06)|Lung NSC(69;1.98e-05)|Prostate(1639;0.00955)|Breast(1374;0.244)		OV - Ovarian serous cystadenocarcinoma(397;1.39e-08)|Epithelial(280;1.82e-07)|all cancers(265;2.04e-05)|Lung(183;0.0525)|BRCA - Breast invasive adenocarcinoma(282;0.0695)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.185)		ATTTTTAAAGGGATCAAGTCGA	0.332													9	34					0	0	0.004672	0	0
TBX15	6913	broad.mit.edu	37	1	119427478	119427478	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:119427478C>T	uc001ehl.1	-	8	1683	c.1368G>A	c.(1366-1368)ATG>ATA	p.M456I	TBX15_uc009whj.1_Missense_Mutation_p.M280I	NM_152380	NP_689593	Q96SF7	TBX15_HUMAN	T-box 15	562						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			large_intestine(1)|pancreas(1)	2	all_neural(166;0.117)	all_cancers(81;0.000692)|all_lung(203;3.05e-06)|Lung NSC(69;2.13e-05)|all_epithelial(167;0.000237)		Lung(183;0.044)|LUSC - Lung squamous cell carcinoma(189;0.141)		TGCTGTGCTCCATCCCTGACG	0.557													12	57					0	0	0.013537	0	0
TBX15	6913	broad.mit.edu	37	1	119427732	119427732	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:119427732G>A	uc001ehl.1	-	8	1429	c.1114C>T	c.(1114-1116)CAG>TAG	p.Q372*	TBX15_uc009whj.1_Nonsense_Mutation_p.Q196*	NM_152380	NP_689593	Q96SF7	TBX15_HUMAN	T-box 15	478						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			large_intestine(1)|pancreas(1)	2	all_neural(166;0.117)	all_cancers(81;0.000692)|all_lung(203;3.05e-06)|Lung NSC(69;2.13e-05)|all_epithelial(167;0.000237)		Lung(183;0.044)|LUSC - Lung squamous cell carcinoma(189;0.141)		ATGACATACTGAAACTGGGAA	0.567													20	23					0	0	0.010504	0	0
TBX15	6913	broad.mit.edu	37	1	119466167	119466167	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:119466167G>A	uc001ehl.1	-	5	750	c.435C>T	c.(433-435)TTC>TTT	p.F145F		NM_152380	NP_689593	Q96SF7	TBX15_HUMAN	T-box 15	251	T-box.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			large_intestine(1)|pancreas(1)	2	all_neural(166;0.117)	all_cancers(81;0.000692)|all_lung(203;3.05e-06)|Lung NSC(69;2.13e-05)|all_epithelial(167;0.000237)		Lung(183;0.044)|LUSC - Lung squamous cell carcinoma(189;0.141)		GGTCACTGCTGAAGTCTTTGC	0.463													26	55					0	0	0.005443	0	0
HMGCS2	3158	broad.mit.edu	37	1	120306903	120306903	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:120306903C>T	uc001eid.2	-	2	502	c.451G>A	c.(451-453)GAT>AAT	p.D151N	HMGCS2_uc010oxj.1_Missense_Mutation_p.D151N|HMGCS2_uc001eie.2_Missense_Mutation_p.D59N	NM_005518	NP_005509	P54868	HMCS2_HUMAN	hydroxymethylglutaryl-CoA synthase 2 isoform 1	151					acetoacetic acid biosynthetic process|cholesterol biosynthetic process|isoprenoid biosynthetic process|ketone body biosynthetic process	mitochondrial matrix	hydroxymethylglutaryl-CoA synthase activity			ovary(2)	2	all_cancers(5;6.38e-10)|all_epithelial(5;1.1e-10)|Melanoma(3;1.93e-05)|Breast(55;0.218)|all_neural(166;0.219)	all_lung(203;1.29e-06)|Lung NSC(69;9.35e-06)|all_epithelial(167;0.00124)		Lung(183;0.0112)|LUSC - Lung squamous cell carcinoma(189;0.0595)		TTGCCTGAATCCTGGAAGAGT	0.512													155	345					0	0	0.014410	0	0
ADAM30	11085	broad.mit.edu	37	1	120437336	120437336	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:120437336G>A	uc001eij.2	-	1	1778	c.1624C>T	c.(1624-1626)CGA>TGA	p.R542*		NM_021794	NP_068566	Q9UKF2	ADA30_HUMAN	ADAM metallopeptidase domain 30 preproprotein	542	Cys-rich.|Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			ovary(2)|lung(1)	3	all_cancers(5;7.07e-10)|all_epithelial(5;1.62e-10)|all_neural(166;0.153)|Breast(55;0.234)	all_lung(203;1.55e-06)|Lung NSC(69;1.04e-05)|all_epithelial(167;0.00138)		Lung(183;0.0204)|LUSC - Lung squamous cell carcinoma(189;0.117)		TTAAAATTTCGAATTCCTGTA	0.378													170	365					0	0	0.014410	0	0
ADAM30	11085	broad.mit.edu	37	1	120438510	120438510	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:120438510C>T	uc001eij.2	-	1	604	c.450G>A	c.(448-450)AAG>AAA	p.K150K		NM_021794	NP_068566	Q9UKF2	ADA30_HUMAN	ADAM metallopeptidase domain 30 preproprotein	150					proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			ovary(2)|lung(1)	3	all_cancers(5;7.07e-10)|all_epithelial(5;1.62e-10)|all_neural(166;0.153)|Breast(55;0.234)	all_lung(203;1.55e-06)|Lung NSC(69;1.04e-05)|all_epithelial(167;0.00138)		Lung(183;0.0204)|LUSC - Lung squamous cell carcinoma(189;0.117)		TGGGAGAGGCCTTGAGGGGCT	0.443													242	499					0	0	0.014410	0	0
PPIAL4G	644591	broad.mit.edu	37	1	143767510	143767510	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:143767510G>A	uc001ejt.2	-	1	372	c.339C>T	c.(337-339)TTC>TTT	p.F113F		NM_001123068	NP_001116540	A2BFH1	PAL4G_HUMAN	peptidylprolyl isomerase A (cyclophilin A)-like	113	PPIase cyclophilin-type.				protein folding	cytoplasm	peptidyl-prolyl cis-trans isomerase activity				0						CAGTGCAGATGAAAAACTGGG	0.478													19	282					0	0	0.008361	0	0
PDE4DIP	9659	broad.mit.edu	37	1	144886274	144886274	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:144886274G>A	uc001elw.3	-	23	3251	c.2960C>T	c.(2959-2961)TCT>TTT	p.S987F	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Missense_Mutation_p.S1053F|PDE4DIP_uc001elv.3_5'UTR	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	987					cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		AGGGGAAAAAGATGGGTTCTG	0.478			T	PDGFRB	MPD								63	286					0	0	0.014410	0	0
SEC22B	9554	broad.mit.edu	37	1	145103977	145103977	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:145103977C>T	uc001eml.1	+	4	285	c.145C>T	c.(145-147)CCT>TCT	p.P49S	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron	NM_004892	NP_004883	O75396	SC22B_HUMAN	SEC22 vesicle trafficking protein homolog B	49	Longin.|Cytoplasmic (Potential).				ER to Golgi vesicle-mediated transport|protein transport	endoplasmic reticulum membrane|ER-Golgi intermediate compartment membrane|Golgi membrane|integral to membrane|melanosome	protein binding				0						TGAACAGTCCCCTACCAGATG	0.393													6	29					0	0	0.001984	0	0
HFE2	148738	broad.mit.edu	37	1	145416699	145416699	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:145416699G>A	uc001eni.2	+	4	1369	c.1044G>A	c.(1042-1044)AAG>AAA	p.K348K	NBPF10_uc001emp.3_Intron|HFE2_uc001enj.2_Silent_p.K122K|HFE2_uc001enk.2_Silent_p.K235K|HFE2_uc001enl.2_Silent_p.K122K	NM_213653	NP_998818	Q6ZVN8	RGMC_HUMAN	hemojuvelin isoform a precursor	348					axon guidance	anchored to membrane				ovary(1)	1	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					GGCTGTGCAAGGAAGGGCTTC	0.527													20	37					0	0	0.008871	0	0
ANKRD35	148741	broad.mit.edu	37	1	145562600	145562600	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:145562600C>T	uc001eob.1	+	10	2396	c.2288C>T	c.(2287-2289)CCG>CTG	p.P763L	NBPF10_uc001emp.3_Intron|ANKRD35_uc010oyx.1_Missense_Mutation_p.P606L	NM_144698	NP_653299	Q8N283	ANR35_HUMAN	ankyrin repeat domain 35	763	Potential.									ovary(4)|skin(1)	5	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					TCCTTGTCCCCGTGTAGGGAG	0.657													3	9					0	0	0.004672	0	0
PDZK1	5174	broad.mit.edu	37	1	145747241	145747241	+	Missense_Mutation	SNP	A	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:145747241A>C	uc001eon.1	+	3	295	c.198A>C	c.(196-198)GAA>GAC	p.E66D	NBPF10_uc001emp.3_Intron|PDZK1_uc001eoo.1_Missense_Mutation_p.E66D|PDZK1_uc010oza.1_Missense_Mutation_p.E66D	NM_002614	NP_002605	Q5T2W1	NHRF3_HUMAN	PDZ domain containing 1	66	PDZ 1.				carnitine transport|cell proliferation|drug transport|positive regulation of ion transmembrane transport	brush border membrane|cytoplasm	PDZ domain binding|transporter activity				0	all_hematologic(18;0.00473)|Acute lymphoblastic leukemia(18;0.0786)		KIRC - Kidney renal clear cell carcinoma(6;0.0764)|Kidney(552;0.118)|Colorectal(543;0.229)			TGGACAAAGAAGAACATATGC	0.478													21	69					0	0	0.012319	0	0
ACP6	51205	broad.mit.edu	37	1	147122015	147122015	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:147122015G>A	uc001epr.2	-	8	1372	c.908C>T	c.(907-909)CCA>CTA	p.P303L	ACP6_uc009wjj.1_3'UTR	NM_016361	NP_057445	Q9NPH0	PPA6_HUMAN	acid phosphatase 6, lysophosphatidic precursor	303					lipid metabolic process	extracellular region|mitochondrion	acid phosphatase activity|protein binding			ovary(4)	4	all_hematologic(923;0.0276)					GTGGAGGAATGGGCCTACTGC	0.537													17	27					0	0	0.004990	0	0
GJA8	2703	broad.mit.edu	37	1	147380418	147380418	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:147380418G>A	uc001epu.1	+	2	399	c.336G>A	c.(334-336)GAG>GAA	p.E112E		NM_005267	NP_005258	P48165	CXA8_HUMAN	connexin 50	112	Cytoplasmic (Potential).				cell communication|visual perception	connexon complex|integral to plasma membrane	channel activity			ovary(2)|large_intestine(2)|breast(1)|skin(1)	6	all_hematologic(923;0.0276)					GCGAGGCGGAGGAGCTGGGCC	0.652													23	38					0	0	0.012319	0	0
GJA8	2703	broad.mit.edu	37	1	147381356	147381356	+	Missense_Mutation	SNP	G	A	A	rs150041151		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:147381356G>A	uc001epu.1	+	2	1337	c.1274G>A	c.(1273-1275)CGA>CAA	p.R425Q		NM_005267	NP_005258	P48165	CXA8_HUMAN	connexin 50	425	Cytoplasmic (Potential).				cell communication|visual perception	connexon complex|integral to plasma membrane	channel activity	p.R425Q(1)		ovary(2)|large_intestine(2)|breast(1)|skin(1)	6	all_hematologic(923;0.0276)					GCCAGCAGCCGAGCCAGGTCA	0.502													13	23					0	0	0.003163	0	0
SV2A	9900	broad.mit.edu	37	1	149879733	149879733	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:149879733G>A	uc001etg.2	-	9	1896	c.1405C>T	c.(1405-1407)CCT>TCT	p.P469S	SV2A_uc009wlk.2_5'Flank|SV2A_uc001eth.2_Missense_Mutation_p.P469S	NM_014849	NP_055664	Q7L0J3	SV2A_HUMAN	synaptic vesicle glycoprotein 2	469	Extracellular (Potential).				neurotransmitter transport	cell junction|endoplasmic reticulum|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			ovary(6)|pancreas(1)	7	Breast(34;0.00769)|all_hematologic(923;0.127)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.221)|STAD - Stomach adenocarcinoma(528;0.247)		Levetiracetam(DB01202)	ATCATGTCAGGAAACCAGACG	0.522													38	82					0	0	0.011902	0	0
MTMR11	10903	broad.mit.edu	37	1	149901597	149901598	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:149901597_149901598GG>AA	uc001etl.3	-	16	2109_2110	c.1858_1859CC>TT	c.(1858-1860)CCA>TTA	p.P620L	SF3B4_uc001etj.1_5'Flank|SF3B4_uc001etk.1_5'Flank|SF3B4_uc009wll.1_5'Flank|MTMR11_uc001etm.1_Missense_Mutation_p.P548L	NM_001145862	NP_001139334	A4FU01	MTMRB_HUMAN	myotubularin related protein 11 isoform a	620	Myotubularin phosphatase.						phosphatase activity			central_nervous_system(1)	1	Breast(34;0.0009)|Ovarian(49;0.0377)|all_hematologic(923;0.0597)|Hepatocellular(266;0.161)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.221)|STAD - Stomach adenocarcinoma(528;0.247)			CAGCAGCCCTGGAGGTAAAGGG	0.584													26	76					0	0	0.004672	0	0
RPRD2	23248	broad.mit.edu	37	1	150444874	150444874	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:150444874C>T	uc009wlr.2	+	11	3651	c.3450C>T	c.(3448-3450)TCC>TCT	p.S1150S	RPRD2_uc010pcc.1_3'UTR|RPRD2_uc001eup.3_Silent_p.S1124S	NM_015203	NP_056018	Q5VT52	RPRD2_HUMAN	Regulation of nuclear pre-mRNA domain containing	1150							protein binding			ovary(1)	1						AGTTGGCATCCCTTGGGGGTG	0.552													7	24					0	0	0.001984	0	0
ECM1	1893	broad.mit.edu	37	1	150482192	150482192	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:150482192C>T	uc001eus.2	+	3	376	c.177C>T	c.(175-177)CAC>CAT	p.H59H	ECM1_uc010pce.1_5'UTR|ECM1_uc010pcf.1_5'UTR|ECM1_uc001eut.2_Silent_p.H59H|ECM1_uc001euu.2_Silent_p.H59H|ECM1_uc001euv.2_Silent_p.H59H|ECM1_uc009wlu.2_5'UTR	NM_004425	NP_004416	Q16610	ECM1_HUMAN	extracellular matrix protein 1 isoform 1	59					angiogenesis|biomineral tissue development|negative regulation of bone mineralization|negative regulation of peptidase activity|ossification|positive regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of I-kappaB kinase/NF-kappaB cascade	proteinaceous extracellular matrix	laminin binding|protease binding|protein C-terminus binding|signal transducer activity			ovary(2)|central_nervous_system(1)	3	all_cancers(9;3.13e-53)|all_epithelial(9;3.74e-43)|all_lung(15;2.43e-34)|Lung NSC(24;8.86e-31)|Breast(34;0.000326)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0395)|Hepatocellular(266;0.108)|Melanoma(130;0.128)|Colorectal(459;0.171)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0757)|all cancers(9;1.29e-21)|BRCA - Breast invasive adenocarcinoma(12;0.000734)|LUSC - Lung squamous cell carcinoma(543;0.171)|STAD - Stomach adenocarcinoma(528;0.206)			CCATGGATCACCCTGACTCCT	0.597													31	51					0	0	0.013726	0	0
HORMAD1	84072	broad.mit.edu	37	1	150672652	150672652	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:150672652C>T	uc001evk.1	-	14	1146	c.1040G>A	c.(1039-1041)GGA>GAA	p.G347E	GOLPH3L_uc001evj.2_5'Flank|GOLPH3L_uc010pci.1_5'Flank|HORMAD1_uc001evl.1_Missense_Mutation_p.G340E|HORMAD1_uc001evm.1_Missense_Mutation_p.G267E	NM_032132	NP_115508	Q86X24	HORM1_HUMAN	HORMA domain containing 1	347					blastocyst development|cell differentiation|meiotic DNA double-strand break formation|meiotic recombination checkpoint|meiotic sister chromatid cohesion|mitosis|oogenesis|regulation of homologous chromosome segregation|spermatogenesis|synaptonemal complex assembly	chromosome|nucleus				ovary(2)|central_nervous_system(1)	3	all_cancers(9;3.23e-52)|all_epithelial(9;4.68e-43)|all_lung(15;5.74e-35)|Lung NSC(24;2.09e-31)|Breast(34;0.0009)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0395)|Hepatocellular(266;0.108)|Melanoma(130;0.128)|Colorectal(459;0.171)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0241)|Epithelial(6;2.32e-23)|all cancers(9;5.21e-23)|OV - Ovarian serous cystadenocarcinoma(6;6.72e-15)|BRCA - Breast invasive adenocarcinoma(12;0.000479)|LUSC - Lung squamous cell carcinoma(543;0.171)			TGGTTGATTTCCATTTGCCTC	0.308													8	24					0	0	0.006214	0	0
GABPB2	126626	broad.mit.edu	37	1	151090540	151090540	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:151090540C>T	uc001ewr.2	+	9	1486	c.1155C>T	c.(1153-1155)TAC>TAT	p.Y385Y	GABPB2_uc001ews.2_Silent_p.Y345Y|GABPB2_uc001ewt.2_3'UTR	NM_144618	NP_653219	Q8TAK5	GABP2_HUMAN	GA repeat binding protein, beta 2	385	Potential.				positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	protein heterodimerization activity|transcription regulatory region DNA binding				0				all cancers(107;7.17e-05)|GBM - Glioblastoma multiforme(94;0.000662)		CAGAACAGTACCGTCTTAAGC	0.512													25	48					0	0	0.007291	0	0
SEMA6C	10500	broad.mit.edu	37	1	151108594	151108594	+	Silent	SNP	A	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:151108594A>C	uc001ewu.2	-	13	1452	c.1152T>G	c.(1150-1152)TCT>TCG	p.S384S	SEMA6C_uc001ewv.2_Silent_p.S384S|SEMA6C_uc001eww.2_Silent_p.S344S|SEMA6C_uc010pcq.1_Silent_p.S384S	NM_030913	NP_112175	Q9H3T2	SEM6C_HUMAN	semaphorin Y precursor	384	Extracellular (Potential).|Sema.					integral to membrane	receptor activity			ovary(1)|skin(1)	2	Lung SC(34;0.00471)|Ovarian(49;0.0147)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.211)			GGTCTCGGGAAGAGGAGAACA	0.587													15	39					0	0	0.007413	0	0
SEMA6C	10500	broad.mit.edu	37	1	151110475	151110475	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:151110475G>A	uc001ewu.2	-	9	954	c.654C>T	c.(652-654)TCC>TCT	p.S218S	SEMA6C_uc001ewv.2_Silent_p.S218S|SEMA6C_uc001eww.2_Intron|SEMA6C_uc010pcq.1_Silent_p.S218S|SEMA6C_uc009wml.1_RNA	NM_030913	NP_112175	Q9H3T2	SEM6C_HUMAN	semaphorin Y precursor	218	Extracellular (Potential).|Sema.					integral to membrane	receptor activity			ovary(1)|skin(1)	2	Lung SC(34;0.00471)|Ovarian(49;0.0147)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.211)			GGAGCCACTTGGAGTCATACT	0.617													19	37					0	0	0.008871	0	0
RFX5	5993	broad.mit.edu	37	1	151314724	151314724	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:151314724C>T	uc001exv.1	-	11	2003	c.1789G>A	c.(1789-1791)GAG>AAG	p.E597K	RFX5_uc001exw.1_Missense_Mutation_p.E597K|RFX5_uc009wmr.1_Missense_Mutation_p.E597K|RFX5_uc010pcx.1_Missense_Mutation_p.E557K	NM_001025603	NP_001020774	P48382	RFX5_HUMAN	regulatory factor X, 5	597						nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1	Lung SC(34;0.00471)|Ovarian(49;0.0147)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.112)|LUSC - Lung squamous cell carcinoma(543;0.181)			AGCACATGCTCCTTTAAGTCT	0.463													44	60					0	0	0.011902	0	0
SNX27	81609	broad.mit.edu	37	1	151638458	151638458	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:151638458C>T	uc001eyn.1	+	6	972	c.956C>T	c.(955-957)GCC>GTC	p.A319V	SNX27_uc001eyo.2_Missense_Mutation_p.A226V|SNX27_uc001eyp.2_Missense_Mutation_p.A133V	NM_030918	NP_112180	Q96L92	SNX27_HUMAN	sorting nexin family member 27	319	Ras-associating.				cell communication|protein transport|signal transduction	cytosol|early endosome	phosphatidylinositol binding|protein binding			ovary(2)|central_nervous_system(1)	3	Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		LUSC - Lung squamous cell carcinoma(543;0.181)			AATTACTTTGCCTTATTTGAA	0.373													18	31					0	0	0.014323	0	0
TCHHL1	126637	broad.mit.edu	37	1	152058366	152058366	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:152058366C>T	uc001ezo.1	-	3	1857	c.1792G>A	c.(1792-1794)GGA>AGA	p.G598R		NM_001008536	NP_001008536	Q5QJ38	TCHL1_HUMAN	trichohyalin-like 1	598							calcium ion binding			ovary(1)|skin(1)	2	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.246)			CCAGGTGTTCCCTGCCTCTGG	0.552													52	90					0	0	0.014410	0	0
RPTN	126638	broad.mit.edu	37	1	152128193	152128193	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:152128193G>A	uc001ezs.1	-	3	1447	c.1382C>T	c.(1381-1383)TCC>TTC	p.S461F		NM_001122965	NP_001116437	Q6XPR3	RPTN_HUMAN	repetin	461	Gln-rich.					proteinaceous extracellular matrix	calcium ion binding				0						ACCATAGTGGGAACTCTGGCC	0.517													236	466					0	0	0.014410	0	0
RPTN	126638	broad.mit.edu	37	1	152128866	152128866	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:152128866C>T	uc001ezs.1	-	3	774	c.709G>A	c.(709-711)GAT>AAT	p.D237N		NM_001122965	NP_001116437	Q6XPR3	RPTN_HUMAN	repetin	237	Gln-rich.					proteinaceous extracellular matrix	calcium ion binding				0						TAATGAGAATCCTGAATTGGT	0.413													60	106					0	0	0.014410	0	0
HRNR	388697	broad.mit.edu	37	1	152187486	152187486	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:152187486G>A	uc001ezt.1	-	3	6695	c.6619C>T	c.(6619-6621)CGT>TGT	p.R2207C		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	2207	24.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CTGGAAGAACGACCTGAGCCA	0.602													34	443					0	0	0.014410	0	0
HRNR	388697	broad.mit.edu	37	1	152187579	152187579	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:152187579C>T	uc001ezt.1	-	3	6602	c.6526G>A	c.(6526-6528)GGG>AGG	p.G2176R		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	2176	24.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GATCCAGACCCTTGTCGGCCG	0.632													18	409					0	0	0.008361	0	0
HRNR	388697	broad.mit.edu	37	1	152190845	152190845	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:152190845G>A	uc001ezt.1	-	3	3336	c.3260C>T	c.(3259-3261)TCG>TTG	p.S1087L		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	1087	12.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GCCACAGCTCGATGACTGTCC	0.562													113	187					0	0	0.014410	0	0
FLG	2312	broad.mit.edu	37	1	152279679	152279679	+	Silent	SNP	C	T	T	rs143745201		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:152279679C>T	uc001ezu.1	-	3	7719	c.7683G>A	c.(7681-7683)AGG>AGA	p.R2561R		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	2561	Ser-rich.|Filaggrin 15.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity	p.R2561R(1)		ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			ATCCCCAGTTCCTGCTTGTCC	0.587									Ichthyosis				65	168					0	0	0.014410	0	0
FLG	2312	broad.mit.edu	37	1	152282675	152282675	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:152282675C>T	uc001ezu.1	-	3	4723	c.4687G>A	c.(4687-4689)GAA>AAA	p.E1563K		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	1563	Ser-rich.|Filaggrin 9.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GTGGAAGGTTCATGGTGACGT	0.587									Ichthyosis				80	144					0	0	0.014410	0	0
FLG	2312	broad.mit.edu	37	1	152283599	152283599	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:152283599C>T	uc001ezu.1	-	3	3799	c.3763G>A	c.(3763-3765)GAA>AAA	p.E1255K	uc001ezv.2_5'Flank	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	1255	Ser-rich.|Filaggrin 7.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GATGATTGTTCCTGTCCCACC	0.562									Ichthyosis				61	111					0	0	0.014410	0	0
FLG2	388698	broad.mit.edu	37	1	152323556	152323556	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:152323556C>T	uc001ezw.3	-	3	6779	c.6706G>A	c.(6706-6708)GGT>AGT	p.G2236S	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	2236							calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TGTCCATAACCATAGTGGGCA	0.537													111	192					0	0	0.014410	0	0
FLG2	388698	broad.mit.edu	37	1	152324797	152324797	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:152324797C>T	uc001ezw.3	-	3	5538	c.5465G>A	c.(5464-5466)CGA>CAA	p.R1822Q	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	1822							calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			AGTGTGTCCTCGTGAGTGTGG	0.522													53	97					0	0	0.014410	0	0
FLG2	388698	broad.mit.edu	37	1	152324960	152324960	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:152324960C>T	uc001ezw.3	-	3	5375	c.5302G>A	c.(5302-5304)GGA>AGA	p.G1768R	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	1768	Filaggrin 7.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TGTATAGTTCCATGTCTCTCA	0.502													48	105					0	0	0.014410	0	0
FLG2	388698	broad.mit.edu	37	1	152325322	152325322	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:152325322C>T	uc001ezw.3	-	3	5013	c.4940G>A	c.(4939-4941)GGA>GAA	p.G1647E	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	1647	Filaggrin 6.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TCTCTGTCTTCCAGTTGTCCT	0.512													75	195					0	0	0.014410	0	0
FLG2	388698	broad.mit.edu	37	1	152326848	152326848	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:152326848G>A	uc001ezw.3	-	3	3487	c.3414C>T	c.(3412-3414)TCC>TCT	p.S1138S	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	1138	Ser-rich.|Filaggrin 4.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CAAAGCCAGAGGATTTACCTG	0.532													63	105					0	0	0.014410	0	0
FLG2	388698	broad.mit.edu	37	1	152327908	152327908	+	Missense_Mutation	SNP	T	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:152327908T>A	uc001ezw.3	-	3	2427	c.2354A>T	c.(2353-2355)CAA>CTA	p.Q785L	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	785	Ser-rich.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			AGACCCATGTTGGCCATAGCC	0.507													79	208					0	0	0.014410	0	0
FLG2	388698	broad.mit.edu	37	1	152328559	152328559	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:152328559C>T	uc001ezw.3	-	3	1776	c.1703G>A	c.(1702-1704)GGA>GAA	p.G568E	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	568	Ser-rich.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CCCATGTTGTCCAAAGCCAGA	0.517													95	167					0	0	0.014410	0	0
FLG2	388698	broad.mit.edu	37	1	152329585	152329585	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:152329585C>T	uc001ezw.3	-	3	750	c.677G>A	c.(676-678)GGA>GAA	p.G226E	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	226	Ser-rich.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TGATCCAGATCCAGATTCATA	0.443													36	208					0	0	0.006230	0	0
LCE2C	353140	broad.mit.edu	37	1	152648564	152648565	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:152648564_152648565CC>TT	uc001fah.2	+	2	128_129	c.73_74CC>TT	c.(73-75)CCA>TTA	p.P25L		NM_178429	NP_848516	Q5TA81	LCE2C_HUMAN	late cornified envelope 2C	25	Cys-rich.				keratinization						0	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			cccaaaatgtccacctaagtgt	0.421													26	62					0	0	0.004672	0	0
KPRP	448834	broad.mit.edu	37	1	152732846	152732846	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:152732846G>A	uc001fal.1	+	2	840	c.782G>A	c.(781-783)CGG>CAG	p.R261Q		NM_001025231	NP_001020402	Q5T749	KPRP_HUMAN	keratinocyte proline-rich protein	261	Pro-rich.					cytoplasm				ovary(4)|pancreas(1)	5	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			CCTCCTCGGCGGCTGCAGCTT	0.607													9	49					0	0	0.004482	0	0
LCE1B	353132	broad.mit.edu	37	1	152785023	152785023	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:152785023C>T	uc001faq.2	+	1	577	c.101C>T	c.(100-102)CCC>CTC	p.P34L		NM_178349	NP_848126	Q5T7P3	LCE1B_HUMAN	late cornified envelope 1B	34	Pro-rich.				keratinization						0	Lung NSC(65;9.06e-30)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			CCAAAGTGTCCCCCTAAGTGT	0.512													24	47					0	0	0.003330	0	0
IVL	3713	broad.mit.edu	37	1	152882695	152882695	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:152882695G>A	uc001fau.2	+	2	468	c.422G>A	c.(421-423)AGA>AAA	p.R141K		NM_005547	NP_005538	P07476	INVO_HUMAN	involucrin	141					isopeptide cross-linking via N6-(L-isoglutamyl)-L-lysine|keratinization|response to UV-B	cornified envelope|cytoplasm	protein binding, bridging|structural molecule activity			ovary(3)	3	Lung NSC(65;3.97e-29)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			CTAGTCAAGAGAGATGAGCAA	0.338													16	33					0	0	0.003163	0	0
IVL	3713	broad.mit.edu	37	1	152883792	152883792	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:152883792G>A	uc001fau.2	+	2	1565	c.1519G>A	c.(1519-1521)GAA>AAA	p.E507K		NM_005547	NP_005538	P07476	INVO_HUMAN	involucrin	507	39 X 10 AA approximate tandem repeats of [LP]-[EKG]-[LHVYQEK]-[PLSQE]-[EQDV]- [QHEKRGA]-Q-[EMVQLP]-[GKLE]-[QHVNLD].|36; approximate.				isopeptide cross-linking via N6-(L-isoglutamyl)-L-lysine|keratinization|response to UV-B	cornified envelope|cytoplasm	protein binding, bridging|structural molecule activity			ovary(3)	3	Lung NSC(65;3.97e-29)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			ggaacagcaggaaaagcacct	0.194													3	3					0	0	0.004672	0	0
SPRR4	163778	broad.mit.edu	37	1	152944534	152944534	+	Silent	SNP	G	A	A	rs147360157		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:152944534G>A	uc001fav.1	+	2	231	c.168G>A	c.(166-168)CCG>CCA	p.P56P		NM_173080	NP_775103	Q96PI1	SPRR4_HUMAN	small proline-rich protein 4	56	Gln-rich.				keratinization|peptide cross-linking	cell cortex					0	Lung NSC(65;1.46e-29)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			AATGCCCACCGAAAGGCACCA	0.522													20	51					0	0	0.012319	0	0
SPRR2D	6703	broad.mit.edu	37	1	153012660	153012660	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:153012660G>A	uc001fbb.2	-	2	223	c.163C>T	c.(163-165)CCT>TCT	p.P55S	SPRR2D_uc009wnz.2_RNA	NM_006945	NP_008876	P22532	SPR2D_HUMAN	small proline-rich protein 2D	55					keratinization	cornified envelope|cytoplasm					0	Lung NSC(65;1.49e-28)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			GTCACAGGAGGATATTTCTGC	0.557													65	198					0	0	0.014410	0	0
PGLYRP3	114771	broad.mit.edu	37	1	153276396	153276396	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:153276396G>A	uc001fbn.1	-	4	519	c.466C>T	c.(466-468)CAG>TAG	p.Q156*		NM_052891	NP_443123	Q96LB9	PGRP3_HUMAN	peptidoglycan recognition protein 3 precursor	156					defense response to Gram-positive bacterium|detection of bacterium|innate immune response|peptidoglycan catabolic process	extracellular region|intracellular|membrane	N-acetylmuramoyl-L-alanine amidase activity|peptidoglycan receptor activity|zinc ion binding			ovary(2)|pancreas(1)|skin(1)	4	all_lung(78;3.35e-32)|Lung NSC(65;1.22e-30)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			AGAAGTGGCTGAATATACCTG	0.557													23	71					0	0	0.002780	0	0
S100A8	6279	broad.mit.edu	37	1	153362599	153362599	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:153362599C>T	uc001fbs.2	-	3	317	c.262G>A	c.(262-264)GAA>AAA	p.E88K		NM_002964	NP_002955	P05109	S10A8_HUMAN	S100 calcium-binding protein A8	88				VAAHKKSHEESHKE -> WQPTKKAMKKATKSS (in Ref. 1; CAA68390).	chemotaxis	cytoplasm|cytoskeleton|plasma membrane	calcium ion binding|protein binding				0	all_lung(78;2.81e-33)|Lung NSC(65;9.54e-32)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.171)			TGGCTTTCTTCATGGCTTTTT	0.473													25	110					0	0	0.003954	0	0
S100A14	57402	broad.mit.edu	37	1	153587382	153587382	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:153587382C>T	uc001fce.2	-	4	392	c.294G>A	c.(292-294)GAG>GAA	p.E98E	S100A16_uc001fcd.1_5'Flank	NM_020672	NP_065723	Q9HCY8	S10AE_HUMAN	S100 calcium binding protein A14	98					calcium ion homeostasis|defense response to bacterium|positive regulation of granulocyte chemotaxis|positive regulation of monocyte chemotaxis|response to lipopolysaccharide|toll-like receptor 4 signaling pathway	cell junction|microtubule cytoskeleton|perinuclear region of cytoplasm	calcium ion binding|chemokine receptor binding				0	all_lung(78;1.84e-32)|Lung NSC(65;6.67e-31)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.171)			GGACAGGCCTCTCCAGCTTCA	0.542													12	39					0	0	0.001855	0	0
NPR1	4881	broad.mit.edu	37	1	153661483	153661483	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:153661483G>A	uc001fcs.3	+	16	2893	c.2472G>A	c.(2470-2472)GCG>GCA	p.A824A	NPR1_uc010pdz.1_Silent_p.A570A|NPR1_uc010pea.1_Silent_p.A302A	NM_000906	NP_000897	P16066	ANPRA_HUMAN	natriuretic peptide receptor 1 precursor	824	Cytoplasmic (Potential).				body fluid secretion|intracellular signal transduction|negative regulation of angiogenesis|negative regulation of cell growth|positive regulation of renal sodium excretion|positive regulation of urine volume|receptor guanylyl cyclase signaling pathway|regulation of blood pressure|regulation of blood vessel size|regulation of vascular permeability|regulation of vasodilation		ATP binding|GTP binding|guanylate cyclase activity|natriuretic peptide receptor activity|peptide receptor activity, G-protein coupled|protein kinase activity			ovary(3)|lung(2)|stomach(1)|breast(1)	7	all_lung(78;3.75e-32)|Lung NSC(65;1.37e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)		Erythrityl Tetranitrate(DB01613)|Isosorbide Dinitrate(DB00883)|Isosorbide Mononitrate(DB01020)|Nesiritide(DB04899)|Nitric Oxide(DB00435)|Nitroglycerin(DB00727)|Nitroprusside(DB00325)	AGCAGTACGCGAACAATCTGG	0.622													48	87					0	0	0.014410	0	0
CREB3L4	148327	broad.mit.edu	37	1	153946425	153946425	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:153946425G>A	uc001fdn.3	+	10	1338	c.1072G>A	c.(1072-1074)GAG>AAG	p.E358K	CREB3L4_uc010pef.1_Missense_Mutation_p.E211K|CREB3L4_uc001fdo.3_Missense_Mutation_p.E338K|CREB3L4_uc001fdm.1_Missense_Mutation_p.E358K|CREB3L4_uc001fdp.1_Missense_Mutation_p.E338K|CREB3L4_uc001fdr.2_Missense_Mutation_p.E358K|CREB3L4_uc001fdq.2_Missense_Mutation_p.E338K	NM_130898	NP_570968	Q8TEY5	CR3L4_HUMAN	cAMP responsive element binding protein 3-like	358	Lumenal (Potential).				response to unfolded protein	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1	all_lung(78;3.05e-32)|Lung NSC(65;3.74e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)			CAGACTGAGGGAGCCACCTGG	0.552													14	30					0	0	0.001855	0	0
NUP210L	91181	broad.mit.edu	37	1	154026848	154026848	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:154026848G>A	uc001fdw.2	-	25	3411	c.3339C>T	c.(3337-3339)ATC>ATT	p.I1113I	NUP210L_uc009woq.2_Silent_p.I22I|NUP210L_uc010peh.1_Silent_p.I1113I	NM_207308	NP_997191	Q5VU65	P210L_HUMAN	nucleoporin 210kDa-like isoform 1	1113						integral to membrane				skin(5)|ovary(4)|large_intestine(1)|central_nervous_system(1)	11	all_lung(78;9.35e-31)|Lung NSC(65;1.33e-28)|Hepatocellular(266;0.0877)|Melanoma(130;0.128)		LUSC - Lung squamous cell carcinoma(543;0.151)|Colorectal(543;0.198)			AGAAGTGAACGATGGATTGGG	0.473													22	40					0	0	0.012319	0	0
NUP210L	91181	broad.mit.edu	37	1	154091221	154091221	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:154091221G>A	uc001fdw.2	-	11	1462	c.1390C>T	c.(1390-1392)CCC>TCC	p.P464S	NUP210L_uc009woq.2_5'UTR|NUP210L_uc010peh.1_Missense_Mutation_p.P464S	NM_207308	NP_997191	Q5VU65	P210L_HUMAN	nucleoporin 210kDa-like isoform 1	464						integral to membrane				skin(5)|ovary(4)|large_intestine(1)|central_nervous_system(1)	11	all_lung(78;9.35e-31)|Lung NSC(65;1.33e-28)|Hepatocellular(266;0.0877)|Melanoma(130;0.128)		LUSC - Lung squamous cell carcinoma(543;0.151)|Colorectal(543;0.198)			AGCATGATGGGAAAATAAATC	0.323													42	113					0	0	0.007835	0	0
PYGO2	90780	broad.mit.edu	37	1	154931774	154931774	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:154931774G>A	uc001fft.2	-	3	908	c.702C>T	c.(700-702)CTC>CTT	p.L234L		NM_138300	NP_612157	Q9BRQ0	PYGO2_HUMAN	pygopus homolog 2	234	Pro-rich.				Wnt receptor signaling pathway	nucleus	protein binding|zinc ion binding			skin(1)	1	all_epithelial(22;4.9e-30)|all_lung(78;4.1e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)|all_neural(408;0.245)		BRCA - Breast invasive adenocarcinoma(34;0.00034)			GCAGGCTGGGGAGCCCCTGAC	0.627													13	31					0	0	0.002450	0	0
ADAM15	8751	broad.mit.edu	37	1	155028619	155028619	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:155028619C>T	uc001fgr.1	+	9	909	c.808C>T	c.(808-810)CTG>TTG	p.L270L	ADAM15_uc001fgq.1_5'UTR|ADAM15_uc009wpc.1_RNA|ADAM15_uc010pet.1_Silent_p.L254L|ADAM15_uc010peu.1_Silent_p.L287L|ADAM15_uc001fgt.1_Silent_p.L270L|ADAM15_uc010pev.1_Silent_p.L280L|ADAM15_uc001fgs.1_Silent_p.L270L|ADAM15_uc001fgu.1_Silent_p.L270L|ADAM15_uc001fgw.1_Silent_p.L270L|ADAM15_uc001fgv.1_Silent_p.L270L|ADAM15_uc001fgx.1_Silent_p.L270L|ADAM15_uc001fgz.1_RNA|ADAM15_uc001fgy.1_RNA|ADAM15_uc001fha.1_RNA|ADAM15_uc001fhb.1_5'Flank	NM_207197	NP_997080	Q13444	ADA15_HUMAN	a disintegrin and metalloproteinase domain 15	270	Peptidase M12B.|Extracellular (Potential).				angiogenesis|cell-matrix adhesion|collagen catabolic process|proteolysis	acrosomal vesicle|adherens junction|endomembrane system|flagellum|integral to membrane	metalloendopeptidase activity|SH3 domain binding|zinc ion binding			central_nervous_system(3)|skin(2)|ovary(1)	6	all_epithelial(22;1.43e-30)|all_lung(78;6.64e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		BRCA - Breast invasive adenocarcinoma(34;0.000434)			CCAGCGTGACCTGGTGGAGAT	0.602													16	41					0	0	0.006122	0	0
CLK2	1196	broad.mit.edu	37	1	155233748	155233748	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:155233748G>A	uc001fjy.2	-	12	1600	c.1310C>T	c.(1309-1311)CCG>CTG	p.P437L	RAG1AP1_uc010pey.1_Intron|SCAMP3_uc001fjs.2_5'Flank|SCAMP3_uc001fju.2_5'Flank|SCAMP3_uc001fjv.2_5'Flank|SCAMP3_uc001fjt.2_5'Flank|CLK2_uc001fjw.2_Missense_Mutation_p.P436L|CLK2_uc001fjx.2_Missense_Mutation_p.P209L|CLK2_uc009wqm.2_Missense_Mutation_p.P437L	NM_003993	NP_003984	P49760	CLK2_HUMAN	CDC-like kinase 2	437	Protein kinase.					nucleus	ATP binding|protein serine/threonine kinase activity|protein tyrosine kinase activity				0	all_lung(78;2.32e-23)|Hepatocellular(266;0.0877)|all_hematologic(923;0.088)		Epithelial(20;3.72e-10)|all cancers(21;1.19e-09)|BRCA - Breast invasive adenocarcinoma(34;0.000752)|LUSC - Lung squamous cell carcinoma(543;0.193)			CACCCGCAGCGGTTTGCAGTT	0.542								Other_conserved_DNA_damage_response_genes					46	67					0	0	0.014410	0	0
HCN3	57657	broad.mit.edu	37	1	155255658	155255658	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:155255658C>T	uc001fjz.1	+	6	1388	c.1380C>T	c.(1378-1380)TCC>TCT	p.S460S	RAG1AP1_uc010pey.1_Intron|HCN3_uc010pfz.1_Silent_p.S155S	NM_020897	NP_065948	Q9P1Z3	HCN3_HUMAN	hyperpolarization activated cyclic	460	Cytoplasmic (Potential).|cAMP.					integral to membrane	cAMP binding|sodium channel activity|voltage-gated potassium channel activity			ovary(1)|breast(1)	2	all_lung(78;2.32e-23)|Hepatocellular(266;0.0877)|all_hematologic(923;0.088)		Epithelial(20;3.72e-10)|all cancers(21;1.19e-09)|BRCA - Breast invasive adenocarcinoma(34;0.000752)|LUSC - Lung squamous cell carcinoma(543;0.193)			GTGAGGGCTCCGTGGGGAGGA	0.637													38	87					0	0	0.006999	0	0
ASH1L	55870	broad.mit.edu	37	1	155448167	155448167	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:155448167G>A	uc009wqq.2	-	3	4974	c.4494C>T	c.(4492-4494)CCC>CCT	p.P1498P	ASH1L_uc001fkt.2_Silent_p.P1498P|ASH1L_uc009wqr.1_Silent_p.P1498P	NM_018489	NP_060959	Q9NR48	ASH1L_HUMAN	absent, small, or homeotic 1-like	1498					cell-cell signaling|DNA packaging|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	chromosome|Golgi apparatus|nucleus|tight junction	DNA binding|histone-lysine N-methyltransferase activity|zinc ion binding			skin(5)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	11	Hepatocellular(266;0.0997)|all_neural(408;0.129)|all_hematologic(923;0.145)		Epithelial(20;1.74e-08)|all cancers(21;3.29e-08)|BRCA - Breast invasive adenocarcinoma(34;0.021)			TAGAAACCTGGGGTTGTTCAG	0.493													24	52					0	0	0.002780	0	0
ARHGEF2	9181	broad.mit.edu	37	1	155920976	155920976	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:155920976G>A	uc001fmt.2	-	20	2465	c.2347C>T	c.(2347-2349)CGG>TGG	p.R783W	ARHGEF2_uc001fmq.2_Missense_Mutation_p.R21W|ARHGEF2_uc001fmr.2_Missense_Mutation_p.R755W|ARHGEF2_uc001fms.2_Missense_Mutation_p.R782W|ARHGEF2_uc001fmu.2_Missense_Mutation_p.R827W	NM_001162383	NP_001155855	Q92974	ARHG2_HUMAN	Rho/Rac guanine nucleotide exchange factor 2	783					actin filament organization|apoptosis|cell division|cell morphogenesis|induction of apoptosis by extracellular signals|intracellular protein transport|mitosis|negative regulation of microtubule depolymerization|nerve growth factor receptor signaling pathway|positive regulation of NF-kappaB transcription factor activity|regulation of cell proliferation|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|Golgi apparatus|microtubule|ruffle membrane|spindle|tight junction	microtubule binding|Rac GTPase binding|Rac guanyl-nucleotide exchange factor activity|zinc ion binding			ovary(1)	1	Hepatocellular(266;0.133)|all_hematologic(923;0.145)|all_neural(408;0.195)					TCCCCATCCCGAGAGTTGGCT	0.657													5	25					0	0	0.000602	0	0
UBQLN4	56893	broad.mit.edu	37	1	156006855	156006855	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:156006855G>A	uc001fna.2	-	11	1744	c.1720C>T	c.(1720-1722)CGT>TGT	p.R574C	UBQLN4_uc010pgx.1_Missense_Mutation_p.R554C	NM_020131	NP_064516	Q9NRR5	UBQL4_HUMAN	ataxin-1 ubiquitin-like interacting protein	574	UBA.					cytosol|endoplasmic reticulum membrane|nucleus	identical protein binding			pancreas(1)|skin(1)	2	Hepatocellular(266;0.133)|all_neural(408;0.195)					TTAGCCTCACGATTGATGAAG	0.592													16	118					0	0	0.007413	0	0
UBQLN4	56893	broad.mit.edu	37	1	156011382	156011382	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:156011382G>A	uc001fna.2	-	10	1571	c.1547C>T	c.(1546-1548)TCC>TTC	p.S516F	UBQLN4_uc010pgx.1_Missense_Mutation_p.S496F	NM_020131	NP_064516	Q9NRR5	UBQL4_HUMAN	ataxin-1 ubiquitin-like interacting protein	516						cytosol|endoplasmic reticulum membrane|nucleus	identical protein binding			pancreas(1)|skin(1)	2	Hepatocellular(266;0.133)|all_neural(408;0.195)					GGCTGGTGAGGAAGTGGGGGC	0.607													4	30					0	0	0.009096	0	0
NES	10763	broad.mit.edu	37	1	156642749	156642749	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:156642749G>A	uc001fpq.2	-	4	1364	c.1231C>T	c.(1231-1233)CCT>TCT	p.P411S		NM_006617	NP_006608	P48681	NEST_HUMAN	nestin	411	Tail.				brain development|embryonic camera-type eye development|G2/M transition of mitotic cell cycle|negative regulation of apoptosis|positive regulation of intermediate filament depolymerization|positive regulation of neural precursor cell proliferation|stem cell proliferation	cytoplasm|intermediate filament	intermediate filament binding|structural molecule activity			ovary(6)	6	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					AGAGAGAGAGGAGCATCCTGG	0.657													40	87					0	0	0.007835	0	0
INSRR	3645	broad.mit.edu	37	1	156811534	156811534	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:156811534C>T	uc010pht.1	-	20	3704	c.3450G>A	c.(3448-3450)GGG>GGA	p.G1150G	NTRK1_uc001fqf.1_Intron|NTRK1_uc009wsi.1_Intron	NM_014215	NP_055030	P14616	INSRR_HUMAN	insulin receptor-related receptor precursor	1150	Cytoplasmic (Potential).|Protein kinase.				protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|insulin receptor substrate binding|metal ion binding|phosphatidylinositol 3-kinase binding|transmembrane receptor protein tyrosine kinase activity			lung(11)|ovary(5)|skin(2)|kidney(1)|central_nervous_system(1)	20	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					GCAGCCCCTTCCCACCCTTGC	0.617													35	64					0	0	0.003755	0	0
NTRK1	4914	broad.mit.edu	37	1	156843534	156843534	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:156843534C>T	uc001fqh.1	+	8	1016	c.960C>T	c.(958-960)TCC>TCT	p.S320S	NTRK1_uc001fqf.1_Silent_p.S290S|NTRK1_uc009wsi.1_Silent_p.S25S|NTRK1_uc001fqi.1_Silent_p.S320S|NTRK1_uc009wsk.1_Silent_p.S320S	NM_002529	NP_002520	P04629	NTRK1_HUMAN	neurotrophic tyrosine kinase, receptor, type 1	320	Ig-like C2-type 2.|Extracellular (Potential).				activation of adenylate cyclase activity|activation of MAPKK activity|activation of phospholipase C activity|cell differentiation|nerve growth factor receptor signaling pathway|nervous system development|phosphatidylinositol-mediated signaling|Ras protein signal transduction	endosome|integral to plasma membrane	ATP binding|neurotrophin receptor activity|transmembrane receptor protein serine/threonine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(9)|ovary(6)|stomach(1)|central_nervous_system(1)	17	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)				Imatinib(DB00619)	TCAATGGCTCCGTGCTCAATG	0.632			T	TPM3|TPR|TFG	papillary thyroid					TSP Lung(10;0.080)			7	13					0	0	0.001984	0	0
PEAR1	375033	broad.mit.edu	37	1	156878059	156878059	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:156878059C>T	uc001fqj.1	+	9	1158	c.1042C>T	c.(1042-1044)CGC>TGC	p.R348C	PEAR1_uc009wsl.1_Missense_Mutation_p.R149C|PEAR1_uc001fqk.1_5'UTR	NM_001080471	NP_001073940	Q5VY43	PEAR1_HUMAN	platelet endothelial aggregation receptor 1	348						integral to membrane				ovary(2)|central_nervous_system(1)	3	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					CTGCACGGATCGCCTCTGCCC	0.692													10	6					0	0	0.008291	0	0
FCRL5	83416	broad.mit.edu	37	1	157514310	157514310	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:157514310C>T	uc001fqu.2	-	5	744	c.586G>A	c.(586-588)GCC>ACC	p.A196T	FCRL5_uc009wsm.2_Missense_Mutation_p.A196T|FCRL5_uc010phv.1_Missense_Mutation_p.A196T|FCRL5_uc010phw.1_Missense_Mutation_p.A111T|FCRL5_uc001fqv.1_Missense_Mutation_p.A196T|FCRL5_uc010phx.1_5'UTR	NM_031281	NP_112571	Q96RD9	FCRL5_HUMAN	Fc receptor-like 5	196	Extracellular (Potential).|Ig-like C2-type 2.					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(2)|central_nervous_system(1)	6	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.231)				AAGGAGCTGGCTCTCAGCACT	0.547													31	80					0	0	0.009535	0	0
FCRL5	83416	broad.mit.edu	37	1	157514687	157514687	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:157514687G>A	uc001fqu.2	-	4	651	c.493C>T	c.(493-495)CGC>TGC	p.R165C	FCRL5_uc009wsm.2_Missense_Mutation_p.R165C|FCRL5_uc010phv.1_Missense_Mutation_p.R165C|FCRL5_uc010phw.1_Missense_Mutation_p.R80C|FCRL5_uc001fqv.1_Missense_Mutation_p.R165C|FCRL5_uc010phx.1_5'UTR	NM_031281	NP_112571	Q96RD9	FCRL5_HUMAN	Fc receptor-like 5	165	Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(2)|central_nervous_system(1)	6	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.231)				CCAGTACAGCGATATGCACCA	0.368													14	83					0	0	0.002450	0	0
FCRL5	83416	broad.mit.edu	37	1	157516808	157516808	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:157516808G>A	uc001fqu.2	-	3	390	c.232C>T	c.(232-234)CAG>TAG	p.Q78*	FCRL5_uc009wsm.2_Nonsense_Mutation_p.Q78*|FCRL5_uc010phv.1_Nonsense_Mutation_p.Q78*|FCRL5_uc010phw.1_Intron|FCRL5_uc001fqv.1_Nonsense_Mutation_p.Q78*|FCRL5_uc010phx.1_5'UTR	NM_031281	NP_112571	Q96RD9	FCRL5_HUMAN	Fc receptor-like 5	78	Extracellular (Potential).|Ig-like C2-type 1.					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(2)|central_nervous_system(1)	6	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.231)				CCAGATTCCTGAACCTCAAGG	0.488													25	41					0	0	0.002780	0	0
FCRL5	83416	broad.mit.edu	37	1	157516818	157516818	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:157516818G>A	uc001fqu.2	-	3	380	c.222C>T	c.(220-222)ATC>ATT	p.I74I	FCRL5_uc009wsm.2_Silent_p.I74I|FCRL5_uc010phv.1_Silent_p.I74I|FCRL5_uc010phw.1_Intron|FCRL5_uc001fqv.1_Silent_p.I74I|FCRL5_uc010phx.1_5'UTR	NM_031281	NP_112571	Q96RD9	FCRL5_HUMAN	Fc receptor-like 5	74	Extracellular (Potential).|Ig-like C2-type 1.					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(2)|central_nervous_system(1)	6	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.231)				GAACCTCAAGGATATTGTCTG	0.488													24	41					0	0	0.014323	0	0
FCRL3	115352	broad.mit.edu	37	1	157667587	157667587	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:157667587G>A	uc001frb.2	-	5	713	c.421C>T	c.(421-423)CCT>TCT	p.P141S	FCRL3_uc001fqx.3_RNA|FCRL3_uc001fqy.3_RNA|FCRL3_uc001fqz.3_Missense_Mutation_p.P141S|FCRL3_uc009wsn.2_RNA|FCRL3_uc009wso.2_RNA|FCRL3_uc001fra.2_5'UTR|FCRL3_uc001frc.1_Missense_Mutation_p.P141S	NM_052939	NP_443171	Q96P31	FCRL3_HUMAN	Fc receptor-like 3 precursor	141	Ig-like C2-type 2.|Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(1)	4	all_hematologic(112;0.0378)					TAACTATTAGGAAGCTGTTTT	0.353													25	85					0	0	0.006320	0	0
FCRL1	115350	broad.mit.edu	37	1	157768003	157768003	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:157768003G>A	uc001frg.2	-	8	1175	c.1062C>T	c.(1060-1062)TTC>TTT	p.F354F	FCRL1_uc001frf.2_RNA|FCRL1_uc001frh.2_Silent_p.F354F|FCRL1_uc001fri.2_Silent_p.F315F|FCRL1_uc001frj.2_RNA	NM_052938	NP_443170	Q96LA6	FCRL1_HUMAN	Fc receptor-like 1 isoform 1 precursor	354	ITIM motif 1.|Cytoplasmic (Potential).					integral to membrane|plasma membrane	receptor activity			skin(4)|ovary(3)	7	all_hematologic(112;0.0378)		LUSC - Lung squamous cell carcinoma(543;0.24)			TGAGGTAGGTGAACTCTTGGG	0.498													20	36					0	0	0.010504	0	0
FCRL1	115350	broad.mit.edu	37	1	157772375	157772375	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:157772375G>A	uc001frg.2	-	4	512	c.399C>T	c.(397-399)ATC>ATT	p.I133I	FCRL1_uc001frf.2_5'Flank|FCRL1_uc001frh.2_Silent_p.I133I|FCRL1_uc001fri.2_Silent_p.I133I|FCRL1_uc001frj.2_Intron	NM_052938	NP_443170	Q96LA6	FCRL1_HUMAN	Fc receptor-like 1 isoform 1 precursor	133	Ig-like C2-type 2.|Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			skin(4)|ovary(3)	7	all_hematologic(112;0.0378)		LUSC - Lung squamous cell carcinoma(543;0.24)			CAACTGAGCAGATGAGGACCA	0.547													13	31					0	0	0.001855	0	0
CD1C	911	broad.mit.edu	37	1	158263016	158263016	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:158263016A>G	uc001fru.2	+	5	1196	c.904A>G	c.(904-906)ATG>GTG	p.M302V	CD1C_uc001frv.2_Intron	NM_001765	NP_001756	P29017	CD1C_HUMAN	CD1C antigen precursor	302	Extracellular (Potential).				antigen processing and presentation|T cell activation involved in immune response	endosome membrane|integral to plasma membrane	endogenous lipid antigen binding|exogenous lipid antigen binding|glycolipid binding|lipopeptide binding			ovary(2)|skin(1)|pancreas(1)	4	all_hematologic(112;0.0378)					CCACTTTTCCATGAATTGGAT	0.378													48	122					0	0	0.014410	0	0
CD1B	910	broad.mit.edu	37	1	158299729	158299729	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:158299729C>T	uc001frx.2	-	3	628	c.520G>A	c.(520-522)GAA>AAA	p.E174K	CD1B_uc001frw.2_Missense_Mutation_p.E67K	NM_001764	NP_001755	P29016	CD1B_HUMAN	CD1B antigen precursor	174	Extracellular (Potential).				antigen processing and presentation|immune response	endosome membrane|integral to membrane|lysosomal membrane|plasma membrane	protein binding			ovary(2)	2	all_hematologic(112;0.0378)					CTCACAGTTTCCATGATACCT	0.468													35	64					0	0	0.003271	0	0
CD1B	910	broad.mit.edu	37	1	158300776	158300776	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:158300776G>A	uc001frx.2	-	2	246	c.138C>T	c.(136-138)GGC>GGT	p.G46G	CD1B_uc001frw.2_5'UTR|CD1B_uc010pic.1_Silent_p.G46G	NM_001764	NP_001755	P29016	CD1B_HUMAN	CD1B antigen precursor	46	Extracellular (Potential).				antigen processing and presentation|immune response	endosome membrane|integral to membrane|lysosomal membrane|plasma membrane	protein binding			ovary(2)	2	all_hematologic(112;0.0378)					ACCAGCCTGAGCCTTGAGTTT	0.488													96	164					0	0	0.014410	0	0
CD1E	913	broad.mit.edu	37	1	158325885	158325885	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:158325885C>T	uc001fse.2	+	4	1133	c.894C>T	c.(892-894)ATC>ATT	p.I298I	CD1E_uc010pid.1_Silent_p.I296I|CD1E_uc010pie.1_Silent_p.I199I|CD1E_uc010pif.1_Silent_p.I109I|CD1E_uc001fsd.2_Intron|CD1E_uc001fsk.2_Silent_p.I208I|CD1E_uc001fsj.2_Intron|CD1E_uc001fsc.2_Silent_p.I109I|CD1E_uc010pig.1_Intron|CD1E_uc001fsa.2_Intron|CD1E_uc001fsf.2_Silent_p.I298I|CD1E_uc001fry.2_Intron|CD1E_uc001fsg.2_Intron|CD1E_uc001fsh.2_Silent_p.I109I|CD1E_uc001fsi.2_Intron|CD1E_uc009wsv.2_Silent_p.I199I|CD1E_uc001frz.2_Silent_p.I208I|CD1E_uc009wsw.2_Silent_p.I56I	NM_030893	NP_112155	P15812	CD1E_HUMAN	CD1E antigen isoform a precursor	298	Ig-like.				antigen processing and presentation|immune response	early endosome|Golgi membrane|integral to plasma membrane|late endosome|lysosomal lumen				skin(3)	3	all_hematologic(112;0.0378)					ATGATCTAATCATCCATTGGG	0.547													11	53					0	0	0.010729	0	0
CD1E	913	broad.mit.edu	37	1	158326570	158326570	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:158326570G>A	uc001fse.2	+	6	1290	c.1051G>A	c.(1051-1053)GGA>AGA	p.G351R	CD1E_uc001fsd.2_3'UTR|CD1E_uc001fsk.2_Missense_Mutation_p.G261R|CD1E_uc001fsj.2_Missense_Mutation_p.G194R|CD1E_uc001fsc.2_Missense_Mutation_p.G162R|CD1E_uc010pig.1_RNA|CD1E_uc001fsa.2_Missense_Mutation_p.G107R|CD1E_uc001fsf.2_Missense_Mutation_p.G339R|CD1E_uc001fry.2_Missense_Mutation_p.G284R|CD1E_uc001fsg.2_3'UTR|CD1E_uc001fsh.2_Missense_Mutation_p.G150R|CD1E_uc001fsi.2_3'UTR|CD1E_uc009wsv.2_Missense_Mutation_p.G252R|CD1E_uc001frz.2_Missense_Mutation_p.G249R|CD1E_uc009wsw.2_Nonsense_Mutation_p.W65*	NM_030893	NP_112155	P15812	CD1E_HUMAN	CD1E antigen isoform a precursor	351					antigen processing and presentation|immune response	early endosome|Golgi membrane|integral to plasma membrane|late endosome|lysosomal lumen				skin(3)	3	all_hematologic(112;0.0378)					CTTTCTCATGGGAGCCAACAC	0.403													24	40					0	0	0.014323	0	0
OR10T2	128360	broad.mit.edu	37	1	158368604	158368604	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:158368604G>A	uc010pih.1	-	1	653	c.653C>T	c.(652-654)TCC>TTC	p.S218F		NM_001004475	NP_001004475	Q8NGX3	O10T2_HUMAN	olfactory receptor, family 10, subfamily T,	218	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3	all_hematologic(112;0.0378)					GAAGCCATAGGATATGAGAAT	0.463													6	48					0	0	0.001168	0	0
OR10K2	391107	broad.mit.edu	37	1	158389728	158389728	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:158389728G>A	uc010pii.1	-	1	929	c.929C>T	c.(928-930)TCC>TTC	p.S310F		NM_001004476	NP_001004476	Q6IF99	O10K2_HUMAN	olfactory receptor, family 10, subfamily K,	310	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1	all_hematologic(112;0.0378)					TTACAACAGGGAAATTGTTCT	0.189													5	26					0	0	0.000602	0	0
OR10R2	343406	broad.mit.edu	37	1	158450494	158450494	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:158450494C>T	uc010pik.1	+	1	827	c.827C>T	c.(826-828)TCC>TTC	p.S276F	uc001fso.1_RNA	NM_001004472	NP_001004472	Q8NGX6	O10R2_HUMAN	olfactory receptor, family 10, subfamily R,	276	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(2)|skin(1)	3	all_hematologic(112;0.0378)					GGCTGTGCTTCCTTCATCTAC	0.488													21	33					0	0	0.010504	0	0
OR6Y1	391112	broad.mit.edu	37	1	158517231	158517231	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:158517231G>A	uc010pil.1	-	1	665	c.665C>T	c.(664-666)TCC>TTC	p.S222F		NM_001005189	NP_001005189	Q8NGX8	OR6Y1_HUMAN	olfactory receptor, family 6, subfamily Y,	222	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					AGCAGCGTAGGATGCCACCAC	0.547													24	44					0	0	0.014323	0	0
OR10X1	128367	broad.mit.edu	37	1	158549442	158549442	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:158549442G>A	uc010pin.1	-	1	248	c.248C>T	c.(247-249)TCC>TTC	p.S83F		NM_001004477	NP_001004477	Q8NGY0	O10X1_HUMAN	olfactory receptor, family 10, subfamily X,	83	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					CTCAGAGAAGGAGAGTGCACT	0.502													20	53					0	0	0.003954	0	0
OR10Z1	128368	broad.mit.edu	37	1	158576745	158576745	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:158576745G>A	uc010pio.1	+	1	517	c.517G>A	c.(517-519)GAA>AAA	p.E173K		NM_001004478	NP_001004478	Q8NGY1	O10Z1_HUMAN	olfactory receptor, family 10, subfamily Z,	173	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)|skin(1)	2	all_hematologic(112;0.0378)					CAGCTCCCATGAAATCCAGCA	0.498													15	93					0	0	0.003163	0	0
SPTA1	6708	broad.mit.edu	37	1	158618341	158618341	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:158618341C>T	uc001fst.1	-	26	3871	c.3672G>A	c.(3670-3672)CGG>CGA	p.R1224R		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	1224	Spectrin 12.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton	p.R1224W(1)		ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					AGCCCTCATGCCGTCGCTGAA	0.502													29	62					0	0	0.010818	0	0
SPTA1	6708	broad.mit.edu	37	1	158650416	158650416	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:158650416C>T	uc001fst.1	-	5	834	c.635G>A	c.(634-636)GGG>GAG	p.G212E		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	212	Spectrin 3.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					AACAACTCTCCCTTCTTTAGC	0.463													33	91					0	0	0.003755	0	0
OR6K3	391114	broad.mit.edu	37	1	158687109	158687109	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:158687109G>A	uc010pip.1	-	1	845	c.845C>T	c.(844-846)CCA>CTA	p.P282L		NM_001005327	NP_001005327	Q8NGY3	OR6K3_HUMAN	olfactory receptor, family 6, subfamily K,	282	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|kidney(1)|central_nervous_system(1)	3	all_hematologic(112;0.0378)					CAAAACTGGTGGATAAGTGTC	0.448													23	49					0	0	0.014323	0	0
OR6K6	128371	broad.mit.edu	37	1	158725001	158725001	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:158725001C>T	uc001fsw.1	+	1	396	c.396C>T	c.(394-396)TTC>TTT	p.F132F		NM_001005184	NP_001005184	Q8NGW6	OR6K6_HUMAN	olfactory receptor, family 6, subfamily K,	132	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_hematologic(112;0.0378)					TGTACTTTTTCCACTCACTTG	0.493													14	56					0	0	0.002450	0	0
MNDA	4332	broad.mit.edu	37	1	158811981	158811981	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:158811981G>A	uc001fsz.1	+	2	238	c.38G>A	c.(37-39)GGA>GAA	p.G13E		NM_002432	NP_002423	P41218	MNDA_HUMAN	myeloid cell nuclear differentiation antigen	13	DAPIN.				B cell receptor signaling pathway|cellular defense response|negative regulation of B cell proliferation|positive regulation of apoptosis|regulation of transcription, DNA-dependent|response to DNA damage stimulus|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			ovary(2)|skin(2)	4	all_hematologic(112;0.0378)					TTGCTGAAAGGATTTGAGCTC	0.318													12	29					0	0	0.010729	0	0
MNDA	4332	broad.mit.edu	37	1	158813786	158813786	+	Silent	SNP	G	A	A	rs140332455		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:158813786G>A	uc001fsz.1	+	4	644	c.444G>A	c.(442-444)AGG>AGA	p.R148R		NM_002432	NP_002423	P41218	MNDA_HUMAN	myeloid cell nuclear differentiation antigen	148					B cell receptor signaling pathway|cellular defense response|negative regulation of B cell proliferation|positive regulation of apoptosis|regulation of transcription, DNA-dependent|response to DNA damage stimulus|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding	p.R148R(1)		ovary(2)|skin(2)	4	all_hematologic(112;0.0378)					AAGCCAAAAGGAATAAGGTGT	0.443													21	43					0	0	0.002780	0	0
MNDA	4332	broad.mit.edu	37	1	158815497	158815497	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:158815497G>A	uc001fsz.1	+	5	891	c.691G>A	c.(691-693)GGG>AGG	p.G231R		NM_002432	NP_002423	P41218	MNDA_HUMAN	myeloid cell nuclear differentiation antigen	231	HIN-200.				B cell receptor signaling pathway|cellular defense response|negative regulation of B cell proliferation|positive regulation of apoptosis|regulation of transcription, DNA-dependent|response to DNA damage stimulus|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			ovary(2)|skin(2)	4	all_hematologic(112;0.0378)					CCCAGAAAATGGGAAAAGCAC	0.428													19	25					0	0	0.007413	0	0
CADM3	57863	broad.mit.edu	37	1	159169565	159169565	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:159169565C>T	uc001ftl.2	+	8	1119	c.977C>T	c.(976-978)TCC>TTC	p.S326F	CADM3_uc001ftk.2_Missense_Mutation_p.S360F|uc001ftm.1_Intron	NM_001127173	NP_001120645	Q8N126	CADM3_HUMAN	cell adhesion molecule 3 isoform 2	326	Extracellular (Potential).				adherens junction organization|cell junction assembly|heterophilic cell-cell adhesion|homophilic cell adhesion	cell-cell junction|integral to membrane	protein homodimerization activity			ovary(2)	2	all_hematologic(112;0.0429)					CCCTCCTCCTCCAGCACCTAC	0.532													11	39					0	0	0.013537	0	0
FCER1A	2205	broad.mit.edu	37	1	159272208	159272208	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:159272208C>T	uc001ftq.2	+	2	153	c.54C>T	c.(52-54)TTC>TTT	p.F18F		NM_002001	NP_001992	P12319	FCERA_HUMAN	Fc fragment of IgE, high affinity I, receptor	18						integral to plasma membrane				lung(2)|skin(2)|prostate(1)	5	all_hematologic(112;0.0429)				Benzylpenicilloyl Polylysine(DB00895)|Omalizumab(DB00043)	TACTGTTCTTCGGTAAGTAGA	0.502													39	88					0	0	0.007835	0	0
FCER1A	2205	broad.mit.edu	37	1	159275788	159275788	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:159275788C>T	uc001ftq.2	+	5	441	c.342C>T	c.(340-342)CTC>CTT	p.L114L		NM_002001	NP_001992	P12319	FCERA_HUMAN	Fc fragment of IgE, high affinity I, receptor	114	Ig-like 2.|Extracellular (Potential).					integral to plasma membrane				lung(2)|skin(2)|prostate(1)	5	all_hematologic(112;0.0429)				Benzylpenicilloyl Polylysine(DB00895)|Omalizumab(DB00043)	ACTGGCTGCTCCTTCAGGCCT	0.453													14	22					0	0	0.002450	0	0
FCER1A	2205	broad.mit.edu	37	1	159277696	159277696	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:159277696C>T	uc001ftq.2	+	6	847	c.748C>T	c.(748-750)CCT>TCT	p.P250S		NM_002001	NP_001992	P12319	FCERA_HUMAN	Fc fragment of IgE, high affinity I, receptor	250	Cytoplasmic (Potential).					integral to plasma membrane				lung(2)|skin(2)|prostate(1)	5	all_hematologic(112;0.0429)				Benzylpenicilloyl Polylysine(DB00895)|Omalizumab(DB00043)	GAACCCACATCCTAAGCCAAA	0.383													7	28					0	0	0.001984	0	0
OR10J1	26476	broad.mit.edu	37	1	159409968	159409968	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:159409968C>T	uc010piv.1	+	1	420	c.420C>T	c.(418-420)CCC>CCT	p.P140P	uc001fts.3_Intron	NM_012351	NP_036483	P30954	O10J1_HUMAN	olfactory receptor, family 10, subfamily J,	140	Cytoplasmic (Potential).				sensory perception of smell|single fertilization	integral to plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0429)					TCTGCAACCCCCTGAGATACA	0.488													15	78					0	0	0.003163	0	0
SLAMF8	56833	broad.mit.edu	37	1	159799890	159799890	+	Missense_Mutation	SNP	C	T	T	rs141884763		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:159799890C>T	uc001fue.3	+	2	485	c.275C>T	c.(274-276)CCG>CTG	p.P92L		NM_020125	NP_064510	Q9P0V8	SLAF8_HUMAN	SLAM family member 8 precursor	92	Extracellular (Potential).					integral to membrane					0	all_hematologic(112;0.0597)					GAGCTCGGGCCGCTGGAGTCT	0.627													26	39					0	0	0.003330	0	0
SLAMF8	56833	broad.mit.edu	37	1	159802870	159802870	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:159802870G>A	uc001fue.3	+	3	782	c.572G>A	c.(571-573)GGA>GAA	p.G191E		NM_020125	NP_064510	Q9P0V8	SLAF8_HUMAN	SLAM family member 8 precursor	191	Ig-like C2-type.|Extracellular (Potential).					integral to membrane					0	all_hematologic(112;0.0597)					ATTTCCCTGGGACCAGGAGAC	0.547													19	40					0	0	0.007413	0	0
IGSF9	57549	broad.mit.edu	37	1	159898388	159898389	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:159898388_159898389GG>AA	uc001fur.2	-	19	2987_2988	c.2789_2790CC>TT	c.(2788-2790)CCC>CTT	p.P930L	IGSF9_uc001fuq.2_Missense_Mutation_p.P914L|IGSF9_uc001fup.2_Missense_Mutation_p.P76L	NM_001135050	NP_001128522	Q9P2J2	TUTLA_HUMAN	immunoglobulin superfamily, member 9 isoform a	930	Pro-rich.|Cytoplasmic (Potential).					cell junction|integral to membrane|synapse				ovary(2)|central_nervous_system(2)|large_intestine(1)	5	all_hematologic(112;0.0597)	Breast(1374;0.000126)	BRCA - Breast invasive adenocarcinoma(70;0.111)			CTCGGAAGAAGGGCAGGCTCAG	0.644													4	16					0	0	0.004672	0	0
COPA	1314	broad.mit.edu	37	1	160263246	160263246	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:160263246G>A	uc009wti.2	-	26	3078	c.2684C>T	c.(2683-2685)TCC>TTC	p.S895F	COPA_uc001fvv.3_Missense_Mutation_p.S904F	NM_004371	NP_004362	P53621	COPA_HUMAN	coatomer protein complex, subunit alpha isoform	895					COPI coating of Golgi vesicle|intracellular protein transport|pancreatic juice secretion|retrograde vesicle-mediated transport, Golgi to ER	COPI vesicle coat|cytosol|extracellular space|microsome|soluble fraction	hormone activity|structural molecule activity			ovary(1)|skin(1)	2	all_cancers(52;8.15e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			TGCCCCAGGGGATATATCCTA	0.353													7	10					0	0	0.001984	0	0
LY9	4063	broad.mit.edu	37	1	160793421	160793421	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:160793421C>T	uc001fwu.2	+	8	1715	c.1665C>T	c.(1663-1665)CCC>CCT	p.P555P	LY9_uc001fwv.2_Silent_p.P541P|LY9_uc001fww.2_Silent_p.P465P|LY9_uc001fwx.2_Silent_p.P465P|LY9_uc001fwy.1_Silent_p.P353P|LY9_uc001fwz.2_Silent_p.P193P	NM_002348	NP_002339	Q9HBG7	LY9_HUMAN	lymphocyte antigen 9 isoform a	555	Cytoplasmic (Potential).				cell adhesion|immunoglobulin mediated immune response	integral to membrane				ovary(1)	1	all_cancers(52;2.72e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00737)			TGCACAAGCCCATCAGTGGAA	0.577													36	67					0	0	0.003755	0	0
ARHGAP30	257106	broad.mit.edu	37	1	161019038	161019038	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:161019038C>T	uc001fxl.2	-	12	2119	c.1773G>A	c.(1771-1773)CTG>CTA	p.L591L	ARHGAP30_uc001fxk.2_Silent_p.L591L|ARHGAP30_uc001fxm.2_Silent_p.L437L|ARHGAP30_uc009wtx.2_Silent_p.L264L|ARHGAP30_uc001fxn.1_Silent_p.L437L	NM_001025598	NP_001020769	Q7Z6I6	RHG30_HUMAN	Rho GTPase activating protein 30 isoform 1	591					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(2)|upper_aerodigestive_tract(1)	3	all_cancers(52;8.05e-20)|Breast(13;0.00188)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00122)			CAGCGGAGTCCAGGGAACAGC	0.577													46	73					0	0	0.014410	0	0
ARHGAP30	257106	broad.mit.edu	37	1	161022294	161022294	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:161022294G>A	uc001fxl.2	-	8	1222	c.876C>T	c.(874-876)ATC>ATT	p.I292I	ARHGAP30_uc001fxk.2_Silent_p.I292I|ARHGAP30_uc001fxm.2_Silent_p.I138I|ARHGAP30_uc009wtx.2_5'UTR|ARHGAP30_uc001fxn.1_Silent_p.I138I	NM_001025598	NP_001020769	Q7Z6I6	RHG30_HUMAN	Rho GTPase activating protein 30 isoform 1	292					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(2)|upper_aerodigestive_tract(1)	3	all_cancers(52;8.05e-20)|Breast(13;0.00188)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00122)			CTAAATTGAAGATAGACCTCC	0.547													30	174					0	0	0.007291	0	0
ARHGAP30	257106	broad.mit.edu	37	1	161022330	161022330	+	Silent	SNP	C	T	T	rs150654338		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:161022330C>T	uc001fxl.2	-	8	1186	c.840G>A	c.(838-840)AGG>AGA	p.R280R	ARHGAP30_uc001fxk.2_Silent_p.R280R|ARHGAP30_uc001fxm.2_Silent_p.R126R|ARHGAP30_uc009wtx.2_5'UTR|ARHGAP30_uc001fxn.1_Silent_p.R126R	NM_001025598	NP_001020769	Q7Z6I6	RHG30_HUMAN	Rho GTPase activating protein 30 isoform 1	280					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(2)|upper_aerodigestive_tract(1)	3	all_cancers(52;8.05e-20)|Breast(13;0.00188)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00122)			AAGACCCCTTCCTCCTACAAA	0.537													57	67					0	0	0.014410	0	0
PVRL4	81607	broad.mit.edu	37	1	161044424	161044424	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:161044424G>A	uc001fxo.2	-	5	1276	c.977C>T	c.(976-978)TCT>TTT	p.S326F	PVRL4_uc010pjy.1_5'Flank|PVRL4_uc010pjz.1_Missense_Mutation_p.S60F	NM_030916	NP_112178	Q96NY8	PVRL4_HUMAN	poliovirus receptor-related 4 precursor	326	Ig-like C2-type 2.|Extracellular (Potential).				adherens junction organization|cell adhesion|cell junction assembly	adherens junction|extracellular region|integral to membrane				ovary(2)	2	all_cancers(52;8.9e-20)|Breast(13;0.00188)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00165)			AGTGACCTGAGAATCCCTTGA	0.557													35	43					0	0	0.007835	0	0
FCGR3A	2214	broad.mit.edu	37	1	161518461	161518461	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:161518461G>A	uc001gat.3	-	4	206	c.69C>T	c.(67-69)CTC>CTT	p.L23L	FCGR3A_uc001gar.2_Silent_p.L59L|FCGR3A_uc001gas.2_Silent_p.L58L|FCGR3A_uc009wuh.2_Silent_p.L22L|FCGR3A_uc009wui.2_Silent_p.L23L	NM_001127595	NP_001121067	P08637	FCG3A_HUMAN	Fc fragment of IgG, low affinity IIIa, receptor	23	Extracellular (Potential).				immune response|regulation of immune response	extracellular region|integral to membrane|plasma membrane	IgG binding|receptor activity			ovary(1)	1	all_cancers(52;4.89e-16)|all_hematologic(112;0.0207)		BRCA - Breast invasive adenocarcinoma(70;0.00376)		Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	CAGCCTTTGGGAGATCTTCTG	0.552													13	66					0	0	0.004007	0	0
HSD17B7	51478	broad.mit.edu	37	1	162767625	162767626	+	Silent	DNP	CC	TT	TT			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:162767625_162767626CC>TT	uc001gci.2	+	4	461_462	c.366_367CC>TT	c.(364-369)GGCCTG>GGTTTG	p.122_123GL>GL	HSD17B7_uc009wuv.2_RNA	NM_016371	NP_057455	P56937	DHB7_HUMAN	hydroxysteroid (17-beta) dehydrogenase 7	122_123	Extracellular (Potential).				cholesterol biosynthetic process	endoplasmic reticulum membrane|integral to membrane|plasma membrane	3-keto sterol reductase activity|estradiol 17-beta-dehydrogenase activity			ovary(1)	1	all_hematologic(112;0.115)				NADH(DB00157)	CAGCTGAAGGCCTGCTGACCCA	0.411													7	23					0	0	0.004672	0	0
NUF2	83540	broad.mit.edu	37	1	163295907	163295907	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:163295907C>T	uc001gcq.1	+	2	366	c.66C>T	c.(64-66)ATC>ATT	p.I22I	NUF2_uc001gcp.2_Silent_p.I22I|NUF2_uc001gcr.1_Silent_p.I22I|NUF2_uc009wvc.1_Silent_p.I22I	NM_145697	NP_663735	Q9BZD4	NUF2_HUMAN	NUF2, NDC80 kinetochore complex component	22	Interaction with the N-terminus of NDC80.				cell division|chromosome segregation|mitotic prometaphase	condensed chromosome kinetochore|cytosol|Ndc80 complex|nucleus	protein binding			ovary(3)|skin(1)	4	all_hematologic(923;0.101)					GCAATAAGATCTTAACAGGAG	0.363													20	55					0	0	0.008871	0	0
RXRG	6258	broad.mit.edu	37	1	165398114	165398114	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:165398114C>T	uc001gda.2	-	2	439	c.139G>A	c.(139-141)GAT>AAT	p.D47N		NM_006917	NP_008848	P48443	RXRG_HUMAN	retinoid X receptor, gamma isoform a	47	Modulating (By similarity).				regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	retinoid-X receptor activity|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|zinc ion binding				0	all_hematologic(923;0.0773)|Acute lymphoblastic leukemia(8;0.155)				Acitretin(DB00459)|Adapalene(DB00210)|Alitretinoin(DB00523)|Etretinate(DB00926)|Tretinoin(DB00755)	ACTGGGGTATCTGTGTAGCTG	0.607													12	34					0	0	0.010729	0	0
FAM78B	149297	broad.mit.edu	37	1	166039757	166039757	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:166039757G>A	uc001gdr.2	-	3	1097	c.507C>T	c.(505-507)TTC>TTT	p.F169F	FAM78B_uc010plc.1_RNA|FAM78B_uc001gdq.2_5'Flank	NM_001017961	NP_001017961	Q5VT40	FA78B_HUMAN	hypothetical protein LOC149297	169										central_nervous_system(1)|skin(1)	2	all_hematologic(923;0.0813)|Acute lymphoblastic leukemia(8;0.155)					GCCAGGTCGTGAAACTTTGGT	0.507													47	86					0	0	0.014410	0	0
TADA1	117143	broad.mit.edu	37	1	166831521	166831522	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:166831521_166831522CC>TT	uc001gdw.2	-	5	642_643	c.458_459GG>AA	c.(457-459)GGG>GAA	p.G153E	TADA1_uc001gdv.2_Missense_Mutation_p.G11E	NM_053053	NP_444281	Q96BN2	TADA1_HUMAN	transcriptional adaptor 1-like	153					histone H3 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	STAGA complex	transcription coactivator activity			ovary(1)	1						CTATCATTCTCCCTTCAAGCTG	0.505													27	64					0	0	0.004672	0	0
ILDR2	387597	broad.mit.edu	37	1	166904650	166904650	+	Silent	SNP	A	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:166904650A>C	uc001gdx.1	-	6	824	c.768T>G	c.(766-768)CCT>CCG	p.P256P		NM_199351	NP_955383	Q71H61	ILDR2_HUMAN	immunoglobulin-like domain containing receptor	256	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1						GGATGGAGTAAGGGCCGGGGA	0.592													23	42					0	0	0.002780	0	0
MAEL	84944	broad.mit.edu	37	1	166958650	166958650	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:166958650G>A	uc001gdy.1	+	1	132	c.61G>A	c.(61-63)GAA>AAA	p.E21K	MAEL_uc001gdz.1_Missense_Mutation_p.E21K|MAEL_uc009wvf.1_5'Flank	NM_032858	NP_116247	Q96JY0	MAEL_HUMAN	maelstrom homolog	21	HMG box.				cell differentiation|DNA methylation involved in gamete generation|gene silencing by RNA|multicellular organismal development|piRNA metabolic process|spermatogenesis	piP-body	DNA binding			skin(1)	1						GAAGATCCCCGAACTACGGCG	0.597													4	10					0	0	0.009096	0	0
GPA33	10223	broad.mit.edu	37	1	167032879	167032879	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:167032879G>A	uc001gea.1	-	4	855	c.511C>T	c.(511-513)CCT>TCT	p.P171S		NM_005814	NP_005805	Q99795	GPA33_HUMAN	transmembrane glycoprotein A33 precursor	171	Ig-like C2-type.|Extracellular (Potential).					integral to plasma membrane	receptor activity				0						CTGTACTGAGGGGTTGGTGAG	0.572													34	64					0	0	0.005524	0	0
DUSP27	92235	broad.mit.edu	37	1	167097064	167097064	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:167097064C>T	uc001geb.1	+	5	2696	c.2696C>T	c.(2695-2697)TCT>TTT	p.S899F		NM_001080426	NP_001073895	Q5VZP5	DUS27_HUMAN	dual specificity phosphatase 27	899	Ser-rich.				protein dephosphorylation		protein tyrosine/serine/threonine phosphatase activity			ovary(3)	3						TTCCGATATTCTTCCCGCAGT	0.502													12	29					0	0	0.002450	0	0
ADCY10	55811	broad.mit.edu	37	1	167814809	167814809	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:167814809C>T	uc001ger.2	-	21	3297	c.2999G>A	c.(2998-3000)GGA>GAA	p.G1000E	ADCY10_uc009wvk.2_Missense_Mutation_p.G908E|ADCY10_uc010plj.1_Missense_Mutation_p.G847E|ADCY10_uc009wvl.2_Missense_Mutation_p.G999E	NM_018417	NP_060887	Q96PN6	ADCYA_HUMAN	adenylate cyclase 10	1000					intracellular signal transduction|spermatogenesis	cytoskeleton|cytosol|perinuclear region of cytoplasm|plasma membrane|soluble fraction	adenylate cyclase activity|ATP binding|magnesium ion binding			central_nervous_system(2)|ovary(1)	3						ACTTTTAAATCCATGAGACAT	0.408													9	31					0	0	0.004482	0	0
MIR557	693142	broad.mit.edu	37	1	168344851	168344851	+	RNA	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:168344851G>A	hsa-mir-557|MI0003563	+			c.90G>A																				0						GTCTTTGAAAGGAGGTGGAGA	0.463													46	106					0	0	0.014410	0	0
DPT	1805	broad.mit.edu	37	1	168698215	168698215	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:168698215C>T	uc001gfp.2	-	1	214	c.198G>A	c.(196-198)AAG>AAA	p.K66K		NM_001937	NP_001928	Q07507	DERM_HUMAN	dermatopontin precursor	66	2 X 53-55 AA tandem repeats.|1-1.				cell adhesion	extracellular space|proteinaceous extracellular matrix				ovary(1)	1	all_hematologic(923;0.208)					CAGAACCTTCCTTCTTGCTGA	0.587													24	51					0	0	0.005443	0	0
SELP	6403	broad.mit.edu	37	1	169581510	169581510	+	Silent	SNP	T	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:169581510T>C	uc001ggi.3	-	6	971	c.906A>G	c.(904-906)GAA>GAG	p.E302E	SELP_uc001ggh.2_Silent_p.E137E|SELP_uc009wvr.2_Silent_p.E302E	NM_003005	NP_002996	P16109	LYAM3_HUMAN	selectin P precursor	302	Extracellular (Potential).|Sushi 2.				platelet activation|platelet degranulation|positive regulation of platelet activation	external side of plasma membrane|extracellular space|integral to plasma membrane|membrane fraction|platelet alpha granule membrane|platelet dense granule membrane|soluble fraction	fucose binding|glycosphingolipid binding|heparin binding|lipopolysaccharide binding|oligosaccharide binding|sialic acid binding			ovary(2)|skin(2)	4	all_hematologic(923;0.208)				Clopidogrel(DB00758)|Heparin(DB01109)|Tirofiban(DB00775)	ATTGCACCACTTCCGGTCCAA	0.502													31	82					0	0	0.004289	0	0
SELP	6403	broad.mit.edu	37	1	169586518	169586518	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:169586518C>T	uc001ggi.3	-	3	294	c.229G>A	c.(229-231)GAT>AAT	p.D77N	SELP_uc001ggh.2_5'UTR|SELP_uc009wvr.2_Missense_Mutation_p.D77N	NM_003005	NP_002996	P16109	LYAM3_HUMAN	selectin P precursor	77	Extracellular (Potential).|C-type lectin.				platelet activation|platelet degranulation|positive regulation of platelet activation	external side of plasma membrane|extracellular space|integral to plasma membrane|membrane fraction|platelet alpha granule membrane|platelet dense granule membrane|soluble fraction	fucose binding|glycosphingolipid binding|heparin binding|lipopolysaccharide binding|oligosaccharide binding|sialic acid binding			ovary(2)|skin(2)	4	all_hematologic(923;0.208)				Clopidogrel(DB00758)|Heparin(DB01109)|Tirofiban(DB00775)	TTGAGGTAATCAATTTCATTT	0.408													33	105					0	0	0.003755	0	0
SELL	6402	broad.mit.edu	37	1	169672407	169672407	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:169672407G>A	uc001ggk.2	-	6	1139	c.941C>T	c.(940-942)CCA>CTA	p.P314L	C1orf112_uc001ggj.2_Intron|SELL_uc010pls.1_Missense_Mutation_p.P267L|SELL_uc001ggl.1_Missense_Mutation_p.P327L	NM_000655	NP_000646	P14151	LYAM1_HUMAN	selectin L precursor	314	Extracellular (Potential).|Sushi 2.				blood coagulation|cell adhesion|leukocyte migration|regulation of immune response	integral to plasma membrane	glycosphingolipid binding|heparin binding|protease binding|sugar binding				0	all_hematologic(923;0.208)					TTGACATATTGGACTAGGATT	0.378													9	21					0	0	0.008291	0	0
SELE	6401	broad.mit.edu	37	1	169698761	169698761	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:169698761G>A	uc001ggm.3	-	6	926	c.769C>T	c.(769-771)CAA>TAA	p.Q257*	C1orf112_uc001ggj.2_Intron	NM_000450	NP_000441	P16581	LYAM2_HUMAN	selectin E precursor	257	Sushi 2.|Extracellular (Potential).				actin filament-based process|activation of phospholipase C activity|calcium-mediated signaling|heterophilic cell-cell adhesion|leukocyte migration involved in inflammatory response|leukocyte tethering or rolling|positive regulation of receptor internalization|regulation of inflammatory response|response to interleukin-1|response to lipopolysaccharide|response to tumor necrosis factor	caveola|coated pit|cortical cytoskeleton|extracellular space|integral to membrane|perinuclear region of cytoplasm	oligosaccharide binding|phospholipase binding|sialic acid binding|transmembrane receptor activity			ovary(3)|skin(2)	5	all_hematologic(923;0.208)					CCAGGGTTTTGGAAACATTCC	0.438													34	81					0	0	0.004289	0	0
C1orf129	80133	broad.mit.edu	37	1	170952613	170952613	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:170952613C>T	uc001ghg.2	+	9	797	c.667C>T	c.(667-669)CCT>TCT	p.P223S	C1orf129_uc009wvy.2_Missense_Mutation_p.P30S|C1orf129_uc010plz.1_Missense_Mutation_p.P223S	NM_025063	NP_079339	Q5TGP6	CA129_HUMAN	hypothetical protein LOC80133 isoform 2	223							binding			pancreas(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					CCTCCAGTTTCCTTCTTCTGA	0.373													9	26					0	0	0.013537	0	0
C1orf129	80133	broad.mit.edu	37	1	170964595	170964596	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:170964595_170964596CC>TT	uc001ghg.2	+	13	1390_1391	c.1260_1261CC>TT	c.(1258-1263)TTCCCC>TTTTCC	p.P421S	C1orf129_uc009wvy.2_Missense_Mutation_p.P228S|C1orf129_uc010plz.1_Missense_Mutation_p.P421S	NM_025063	NP_079339	Q5TGP6	CA129_HUMAN	hypothetical protein LOC80133 isoform 2	421							binding			pancreas(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					CCCAGTATTTCCCCCAGCTCTT	0.47													29	52					0	0	0.004672	0	0
C1orf129	80133	broad.mit.edu	37	1	170967413	170967413	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:170967413G>A	uc001ghg.2	+	15	1724	c.1594G>A	c.(1594-1596)GAA>AAA	p.E532K	C1orf129_uc009wvy.2_Missense_Mutation_p.E339K|C1orf129_uc010plz.1_Missense_Mutation_p.E532K	NM_025063	NP_079339	Q5TGP6	CA129_HUMAN	hypothetical protein LOC80133 isoform 2	532							binding			pancreas(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					ATTCCTCACTGAAGTGAGTTT	0.398													26	49					0	0	0.006320	0	0
FMO3	2328	broad.mit.edu	37	1	171083156	171083156	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:171083156G>A	uc001ghi.2	+	7	948	c.837G>A	c.(835-837)AGG>AGA	p.R279R	FMO3_uc001ghh.2_Silent_p.R279R|FMO3_uc010pmb.1_Silent_p.R259R|FMO3_uc010pmc.1_Silent_p.R216R	NM_001002294	NP_001002294	P31513	FMO3_HUMAN	flavin containing monooxygenase 3	279					xenobiotic metabolic process	integral to membrane|intrinsic to endoplasmic reticulum membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity			skin(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					GAGTCCTGAGGAAAGAGCCTG	0.398													7	23					0	0	0.004482	0	0
FMO2	2327	broad.mit.edu	37	1	171168536	171168536	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:171168536C>T	uc001ghk.1	+	5	653	c.536C>T	c.(535-537)CCA>CTA	p.P179L	FMO2_uc010pmd.1_Intron	NM_001460	NP_001451	Q99518	FMO2_HUMAN	flavin containing monooxygenase 2	179					drug metabolic process|NADPH oxidation|organic acid metabolic process|toxin metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|host cell microsome|integral to membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity|NADP binding			skin(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					TACAAGCATCCAGATGGATTT	0.478													30	52					0	0	0.013726	0	0
FMO1	2326	broad.mit.edu	37	1	171227251	171227251	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:171227251G>A	uc009wvz.2	+	2	161	c.25G>A	c.(25-27)GGA>AGA	p.G9R	FMO1_uc010pme.1_Missense_Mutation_p.G9R|FMO1_uc001ghl.2_Missense_Mutation_p.G9R|FMO1_uc001ghm.2_Missense_Mutation_p.G9R|FMO1_uc001ghn.2_Missense_Mutation_p.G9R	NM_002021	NP_002012	Q01740	FMO1_HUMAN	flavin containing monooxygenase 1	9	FAD (Potential).				NADPH oxidation|organic acid metabolic process|toxin metabolic process|xenobiotic metabolic process	endoplasmic reticulum lumen|integral to membrane|intrinsic to endoplasmic reticulum membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity|NADP binding			skin(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					TGCCATTGTGGGAGCTGGGGT	0.577													33	43					0	0	0.009535	0	0
FMO4	2329	broad.mit.edu	37	1	171310904	171310904	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:171310904C>T	uc001gho.2	+	10	1820	c.1603C>T	c.(1603-1605)CTT>TTT	p.L535F		NM_002022	NP_002013	P31512	FMO4_HUMAN	flavin containing monooxygenase 4	535					xenobiotic metabolic process	integral to membrane|intrinsic to endoplasmic reticulum membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity|NADP binding			kidney(2)|skin(1)	3	all_cancers(6;3.9e-08)|all_hematologic(923;0.088)|Acute lymphoblastic leukemia(37;0.181)					TAAATCTTCACTTTTCTTGAA	0.438													12	20					0	0	0.013537	0	0
C1orf105	92346	broad.mit.edu	37	1	172431348	172431348	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:172431348G>A	uc001gik.2	+	5	500	c.304G>A	c.(304-306)GAT>AAT	p.D102N		NM_139240	NP_640333	O95561	CA105_HUMAN	hypothetical protein LOC92346	102										skin(1)	1						AATCCCAGATGATCCAAAAGC	0.343													17	21					0	0	0.007413	0	0
TNFSF18	8995	broad.mit.edu	37	1	173013110	173013110	+	Splice_Site	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:173013110C>T	uc001giu.2	-	2	224	c.223_splice	c.e2-1	p.T75_splice		NM_005092	NP_005083	Q9UNG2	TNF18_HUMAN	tumor necrosis factor (ligand) superfamily,						anti-apoptosis|cell-cell signaling|immune response|signal transduction	extracellular space|integral to membrane	cytokine activity|tumor necrosis factor receptor binding			central_nervous_system(1)	1						CCTTAGCAGTCTGTTGGGGAA	0.358													29	77					0	0	0.013726	0	0
SLC9A11	284525	broad.mit.edu	37	1	173495844	173495844	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:173495844C>T	uc001giz.2	-	19	2746	c.2323G>A	c.(2323-2325)GAA>AAA	p.E775K	SLC9A11_uc009wwe.2_Missense_Mutation_p.E333K|SLC9A11_uc010pmq.1_RNA	NM_178527	NP_848622	Q5TAH2	S9A11_HUMAN	solute carrier family 9, member 11	775					sodium ion transport	integral to membrane	ion channel activity|solute:hydrogen antiporter activity			ovary(2)	2						TCCAAAATTTCACATAGTTTC	0.264													15	34					0	0	0.004007	0	0
SLC9A11	284525	broad.mit.edu	37	1	173567081	173567081	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:173567081C>T	uc001giz.2	-	4	742	c.319G>A	c.(319-321)GAT>AAT	p.D107N	SLC9A11_uc010pmq.1_RNA	NM_178527	NP_848622	Q5TAH2	S9A11_HUMAN	solute carrier family 9, member 11	107	Helical; (Potential).				sodium ion transport	integral to membrane	ion channel activity|solute:hydrogen antiporter activity			ovary(2)	2						AATTCTACATCCAAAGCAACC	0.308													21	64					0	0	0.012319	0	0
TNN	63923	broad.mit.edu	37	1	175054614	175054614	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:175054614C>T	uc001gkl.1	+	6	1421	c.1308C>T	c.(1306-1308)CTC>CTT	p.L436L	TNN_uc010pmx.1_Silent_p.L436L	NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	436	Fibronectin type-III 2.				cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		AGCCGATCCTCCTGAATGGCA	0.522													3	9					0	0	0.009096	0	0
TNN	63923	broad.mit.edu	37	1	175096203	175096203	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:175096203C>T	uc001gkl.1	+	13	3140	c.3027C>T	c.(3025-3027)TTC>TTT	p.F1009F		NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	1009	Fibronectin type-III 9.				cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		CTTACCAGTTCCCAGATGGCA	0.517													39	59					0	0	0.008740	0	0
TNR	7143	broad.mit.edu	37	1	175375479	175375479	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:175375479G>A	uc001gkp.1	-	1	453	c.372C>T	c.(370-372)GCC>GCT	p.A124A	TNR_uc009wwu.1_Silent_p.A124A|TNR_uc010pmz.1_Silent_p.A124A	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	124					axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					CACATGGACAGGCCTTTTTGG	0.587													24	54					0	0	0.006320	0	0
PAPPA2	60676	broad.mit.edu	37	1	176526089	176526089	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:176526089G>A	uc001gkz.2	+	2	1795	c.631G>A	c.(631-633)GGA>AGA	p.G211R	PAPPA2_uc001gky.1_Missense_Mutation_p.G211R|PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	211					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding	p.G211R(1)		ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						AGATGGGCAGGGAGACTCCGG	0.562													24	57					0	0	0.014323	0	0
PAPPA2	60676	broad.mit.edu	37	1	176640163	176640163	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:176640163C>T	uc001gkz.2	+	4	3213	c.2049C>T	c.(2047-2049)TTC>TTT	p.F683F	PAPPA2_uc001gky.1_Silent_p.F683F|PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	683	Metalloprotease.				cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						GTACTCACTTCCTCAACATCT	0.512													39	174					0	0	0.006999	0	0
PAPPA2	60676	broad.mit.edu	37	1	176664920	176664920	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:176664920C>T	uc001gkz.2	+	7	3835	c.2671C>T	c.(2671-2673)CGT>TGT	p.R891C	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	891					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						TGGGACCTTTCGTCAGTATGT	0.532													19	55					0	0	0.014323	0	0
PAPPA2	60676	broad.mit.edu	37	1	176671742	176671742	+	Splice_Site	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:176671742G>A	uc001gkz.2	+	9	4401	c.3237_splice	c.e9-1	p.V1079_splice	PAPPA2_uc009www.2_Splice_Site	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1						cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						GGTTTCCACAGGGAGGTCACA	0.498													10	24					0	0	0.006214	0	0
PAPPA2	60676	broad.mit.edu	37	1	176709131	176709131	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:176709131C>T	uc001gkz.2	+	14	5114	c.3950C>T	c.(3949-3951)TCA>TTA	p.S1317L	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	1317					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						TATGGACTGTCATGCCAGCAT	0.408													28	74					0	0	0.013726	0	0
PAPPA2	60676	broad.mit.edu	37	1	176738765	176738765	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:176738765C>T	uc001gkz.2	+	16	5510	c.4346C>T	c.(4345-4347)TCT>TTT	p.S1449F	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	1449	Sushi 1.				cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						CTCACATGTTCTTCTGGGCAC	0.478													30	42					0	0	0.012213	0	0
PAPPA2	60676	broad.mit.edu	37	1	176740190	176740190	+	Missense_Mutation	SNP	T	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:176740190T>A	uc001gkz.2	+	17	5753	c.4589T>A	c.(4588-4590)ATT>AAT	p.I1530N	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	1530	Sushi 3.				cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						GCTCCCCCTATTATTCTGAAT	0.517													30	49					0	0	0.010818	0	0
ASTN1	460	broad.mit.edu	37	1	176853578	176853578	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:176853578C>T	uc001glc.2	-	19	3335	c.3123G>A	c.(3121-3123)CTG>CTA	p.L1041L	ASTN1_uc001glb.1_Silent_p.L1041L|ASTN1_uc001gld.1_Silent_p.L1041L	NM_004319	NP_004310	O14525	ASTN1_HUMAN	astrotactin isoform 1	1049	Fibronectin type-III 1.				cell migration|neuron cell-cell adhesion	integral to membrane				ovary(6)|skin(5)|central_nervous_system(2)|large_intestine(1)|lung(1)	15						GTTCCCACTCCAGGACCACAA	0.532													24	36					0	0	0.002780	0	0
ASTN1	460	broad.mit.edu	37	1	176926927	176926927	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:176926927C>T	uc001glc.2	-	11	1986	c.1774G>A	c.(1774-1776)GAG>AAG	p.E592K	ASTN1_uc001glb.1_Missense_Mutation_p.E592K|ASTN1_uc001gld.1_Missense_Mutation_p.E592K|ASTN1_uc009wwx.1_Missense_Mutation_p.E592K	NM_004319	NP_004310	O14525	ASTN1_HUMAN	astrotactin isoform 1	600					cell migration|neuron cell-cell adhesion	integral to membrane				ovary(6)|skin(5)|central_nervous_system(2)|large_intestine(1)|lung(1)	15						AAGAGAACCTCCAGGCTGTCG	0.532													10	15					0	0	0.006214	0	0
ASTN1	460	broad.mit.edu	37	1	177030393	177030393	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:177030393C>T	uc001glc.2	-	2	504	c.292G>A	c.(292-294)GGG>AGG	p.G98R	ASTN1_uc001glb.1_Missense_Mutation_p.G98R|ASTN1_uc001gld.1_Missense_Mutation_p.G98R|ASTN1_uc009wwx.1_Missense_Mutation_p.G98R	NM_004319	NP_004310	O14525	ASTN1_HUMAN	astrotactin isoform 1	98					cell migration|neuron cell-cell adhesion	integral to membrane				ovary(6)|skin(5)|central_nervous_system(2)|large_intestine(1)|lung(1)	15						TCTGTGTTCCCTGAGATCTCT	0.483													35	60					0	0	0.004289	0	0
FAM5B	57795	broad.mit.edu	37	1	177250287	177250287	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:177250287G>A	uc001glf.2	+	8	2287	c.1975G>A	c.(1975-1977)GAG>AAG	p.E659K	FAM5B_uc001glg.2_Missense_Mutation_p.E554K	NM_021165	NP_066988	Q9C0B6	FAM5B_HUMAN	family with sequence similarity 5, member B	659						extracellular region				skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6						CAGCTCCAATGAGACAATCTA	0.458													19	52					0	0	0.014323	0	0
SEC16B	89866	broad.mit.edu	37	1	177930758	177930758	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:177930758G>A	uc001gli.1	-	6	844	c.754C>T	c.(754-756)CCA>TCA	p.P252S	SEC16B_uc001glk.1_5'UTR|SEC16B_uc001glh.1_5'Flank|SEC16B_uc009wwz.1_5'UTR|SEC16B_uc001glj.1_Missense_Mutation_p.P252S|SEC16B_uc001gll.3_Missense_Mutation_p.P252S	NM_033127	NP_149118	Q96JE7	SC16B_HUMAN	leucine zipper transcription regulator 2	252					protein transport|vesicle-mediated transport	endoplasmic reticulum membrane|Golgi membrane				ovary(3)|central_nervous_system(1)	4						GCTGAAGCTGGGGGATCATCC	0.537													10	33					0	0	0.008291	0	0
C1orf125	126859	broad.mit.edu	37	1	179497543	179497543	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:179497543G>A	uc001gmo.2	+	23	2819	c.2692G>A	c.(2692-2694)GAA>AAA	p.E898K	C1orf125_uc009wxg.2_RNA|C1orf125_uc001gmp.2_Missense_Mutation_p.E824K|C1orf125_uc009wxh.2_RNA	NM_144696	NP_653297	Q5T1B0	AXDN1_HUMAN	hypothetical protein LOC126859 isoform 1	898	Glu-rich.										0						ACCTCTATTTGAAACAGATGT	0.358													8	34					0	0	0.004482	0	0
TDRD5	163589	broad.mit.edu	37	1	179631338	179631338	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:179631338G>A	uc001gnf.1	+	14	2510	c.2260G>A	c.(2260-2262)GGA>AGA	p.G754R	TDRD5_uc010pnp.1_Missense_Mutation_p.G808R|TDRD5_uc001gnh.1_Missense_Mutation_p.G309R	NM_173533	NP_775804	Q8NAT2	TDRD5_HUMAN	tudor domain containing 5	754					DNA methylation involved in gamete generation|P granule organization|spermatid development	chromatoid body|pi-body	nucleic acid binding			ovary(2)|skin(2)|central_nervous_system(1)	5						GATGGGAAAAGGAGGTGATGC	0.453													26	29					0	0	0.003954	0	0
CEP350	9857	broad.mit.edu	37	1	180065016	180065016	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:180065016C>T	uc001gnt.2	+	35	9253	c.8870C>T	c.(8869-8871)GCC>GTC	p.A2957V	CEP350_uc009wxl.2_Missense_Mutation_p.A2956V|CEP350_uc001gnv.2_Missense_Mutation_p.A1092V|CEP350_uc001gnw.1_Missense_Mutation_p.A714V|CEP350_uc001gnx.1_Missense_Mutation_p.A714V	NM_014810	NP_055625	Q5VT06	CE350_HUMAN	centrosome-associated protein 350	2957						centrosome|nucleus|spindle				ovary(4)	4						CTTGGCTGTGCCAGTAAAGGT	0.363													6	24					0	0	0.001168	0	0
KIAA1614	57710	broad.mit.edu	37	1	180905581	180905581	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:180905581C>T	uc001gok.2	+	5	2603	c.2536C>T	c.(2536-2538)CCT>TCT	p.P846S	KIAA1614_uc001gol.1_Missense_Mutation_p.P467S|KIAA1614_uc001gom.1_Intron	NM_020950	NP_066001	Q5VZ46	K1614_HUMAN	hypothetical protein LOC57710	846										ovary(3)|skin(1)	4						CCCTCGGCCTCCTTCAAGAAG	0.637													16	40					0	0	0.004990	0	0
CACNA1E	777	broad.mit.edu	37	1	181695218	181695218	+	Silent	SNP	A	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:181695218A>G	uc001gow.2	+	18	2325	c.2160A>G	c.(2158-2160)GAA>GAG	p.E720E	CACNA1E_uc009wxs.2_Silent_p.E627E	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	720	Cytoplasmic (Potential).|Poly-Glu.				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						AGGAGGAAGAAGAGGCCTTCA	0.552													5	17					0	0	0.001984	0	0
CACNA1E	777	broad.mit.edu	37	1	181705431	181705431	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:181705431G>A	uc001gow.2	+	22	3448	c.3283G>A	c.(3283-3285)GAA>AAA	p.E1095K	CACNA1E_uc009wxs.2_Missense_Mutation_p.E983K|CACNA1E_uc001gox.1_Missense_Mutation_p.E321K|CACNA1E_uc009wxt.2_Missense_Mutation_p.E321K	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	1095	Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						GACGGATGGGGAAGCCAGTCC	0.368													3	9					0	0	0.004672	0	0
CACNA1E	777	broad.mit.edu	37	1	181754494	181754494	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:181754494G>A	uc001gow.2	+	42	5784	c.5619G>A	c.(5617-5619)ATG>ATA	p.M1873I	CACNA1E_uc009wxs.2_Missense_Mutation_p.M1761I|CACNA1E_uc009wxt.2_Missense_Mutation_p.M1099I	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	1873	Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						CAGCAATGATGATCATGGACT	0.483													5	20					0	0	0.001168	0	0
CACNA1E	777	broad.mit.edu	37	1	181754848	181754848	+	Splice_Site	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:181754848G>A	uc001gow.2	+	43	5845	c.5680_splice	c.e43-1	p.K1894_splice	CACNA1E_uc009wxs.2_Splice_Site_p.K1782_splice|CACNA1E_uc009wxt.2_Splice_Site_p.K1120_splice	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,						energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						TTTTTACCCAGAAAAATGCCC	0.453													53	115					0	0	0.014410	0	0
ZNF648	127665	broad.mit.edu	37	1	182025607	182025607	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:182025607G>A	uc001goz.2	-	2	1747	c.1539C>T	c.(1537-1539)TTC>TTT	p.F513F		NM_001009992	NP_001009992	Q5T619	ZN648_HUMAN	zinc finger protein 648	513	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						AGGCAATGCGGAAGGCCCTGC	0.622													8	16					0	0	0.003080	0	0
ZNF648	127665	broad.mit.edu	37	1	182025748	182025748	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:182025748G>A	uc001goz.2	-	2	1606	c.1398C>T	c.(1396-1398)CAC>CAT	p.H466H		NM_001009992	NP_001009992	Q5T619	ZN648_HUMAN	zinc finger protein 648	466	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						GGATGCGCTGGTGGCGCACGA	0.667													7	8					0	0	0.001984	0	0
ZNF648	127665	broad.mit.edu	37	1	182026398	182026398	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:182026398A>G	uc001goz.2	-	2	956	c.748T>C	c.(748-750)TAC>CAC	p.Y250H		NM_001009992	NP_001009992	Q5T619	ZN648_HUMAN	zinc finger protein 648	250					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						AGGCACCTGTAGGGACGCGCC	0.731													4	5					0	0	0.009096	0	0
NMNAT2	23057	broad.mit.edu	37	1	183262847	183262847	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:183262847C>T	uc001gqc.1	-	2	502	c.167G>A	c.(166-168)GGA>GAA	p.G56E	NMNAT2_uc001gqb.1_Missense_Mutation_p.G51E|NMNAT2_uc001gqd.2_5'Flank	NM_015039	NP_055854	Q9BZQ4	NMNA2_HUMAN	nicotinamide mononucleotide adenylyltransferase	56					water-soluble vitamin metabolic process	Golgi membrane|nucleus	ATP binding|nicotinamide-nucleotide adenylyltransferase activity|nicotinate-nucleotide adenylyltransferase activity			skin(1)	1						CACCTGTTTTCCATAGGAGTC	0.522													15	59					0	0	0.004007	0	0
NCF2	4688	broad.mit.edu	37	1	183546838	183546838	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:183546838C>T	uc001gqj.3	-	3	537	c.262G>A	c.(262-264)GAT>AAT	p.D88N	NCF2_uc010pod.1_Missense_Mutation_p.D88N|NCF2_uc010poe.1_Missense_Mutation_p.D88N|NCF2_uc001gqk.3_Missense_Mutation_p.D88N	NM_000433	NP_000424	P19878	NCF2_HUMAN	neutrophil cytosolic factor 2	88	TPR 2.				cellular defense response|innate immune response|respiratory burst|superoxide anion generation	NADPH oxidase complex|nucleolus	electron carrier activity|protein C-terminus binding			ovary(3)	3						ATAGCCAAATCATATCTGCAG	0.443													34	64					0	0	0.003271	0	0
RGL1	23179	broad.mit.edu	37	1	183885674	183885674	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:183885674C>T	uc001gqo.2	+	16	2000	c.1843C>T	c.(1843-1845)CCG>TCG	p.P615S	RGL1_uc001gqm.2_Missense_Mutation_p.P650S|RGL1_uc010pog.1_Missense_Mutation_p.P613S|RGL1_uc010poh.1_Missense_Mutation_p.P613S|RGL1_uc010poi.1_Missense_Mutation_p.P586S	NM_015149	NP_055964	Q9NZL6	RGL1_HUMAN	ral guanine nucleotide dissociation	615					cellular lipid metabolic process|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	intracellular	protein binding|Ral guanyl-nucleotide exchange factor activity			breast(5)|ovary(4)|lung(2)	11						CTCCTCCCCTCCGTCCTGCAA	0.507													27	122					0	0	0.007291	0	0
GLT25D2	23127	broad.mit.edu	37	1	183909805	183909805	+	Missense_Mutation	SNP	T	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:183909805T>G	uc001gqr.2	-	11	1886	c.1514A>C	c.(1513-1515)GAA>GCA	p.E505A	GLT25D2_uc010poj.1_Missense_Mutation_p.E505A|GLT25D2_uc001gqp.2_Missense_Mutation_p.E113A|GLT25D2_uc001gqq.2_Missense_Mutation_p.E242A|GLT25D2_uc001gqs.2_Missense_Mutation_p.E385A	NM_015101	NP_055916	Q8IYK4	GT252_HUMAN	glycosyltransferase 25 domain containing 2	505					lipopolysaccharide biosynthetic process	endoplasmic reticulum lumen	procollagen galactosyltransferase activity			ovary(1)|breast(1)	2						CTGTGCTCCTTCCAGAGAGAT	0.527													26	60					0	0	0.005443	0	0
TSEN15	116461	broad.mit.edu	37	1	184041968	184041968	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:184041968C>T	uc001gqt.3	+	5	582	c.503C>T	c.(502-504)TCT>TTT	p.S168F	TSEN15_uc009wyg.2_RNA|TSEN15_uc001gqu.3_Missense_Mutation_p.L121F	NM_052965	NP_443197	Q8WW01	SEN15_HUMAN	tRNA splicing endonuclease 15 isoform 1	168					mRNA processing|tRNA processing	nucleolus	protein binding				0						CAGAATATTTCTCTTAGAAGA	0.308													9	40					0	0	0.013537	0	0
TSEN15	116461	broad.mit.edu	37	1	184041970	184041970	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:184041970C>T	uc001gqt.3	+	5	584	c.505C>T	c.(505-507)CTT>TTT	p.L169F	TSEN15_uc009wyg.2_RNA|TSEN15_uc001gqu.3_Silent_p.L121L	NM_052965	NP_443197	Q8WW01	SEN15_HUMAN	tRNA splicing endonuclease 15 isoform 1	169					mRNA processing|tRNA processing	nucleolus	protein binding				0						GAATATTTCTCTTAGAAGATG	0.313													8	39					0	0	0.010729	0	0
FAM129A	116496	broad.mit.edu	37	1	184764240	184764240	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:184764240G>A	uc001gra.2	-	14	2852	c.2658C>T	c.(2656-2658)GCC>GCT	p.A886A	FAM129A_uc001grb.1_Intron	NM_052966	NP_443198	Q9BZQ8	NIBAN_HUMAN	niban protein isoform 2	886					negative regulation of protein phosphorylation|positive regulation of protein phosphorylation|positive regulation of translation|response to endoplasmic reticulum stress	cytoplasm|nucleus|plasma membrane				ovary(3)|skin(1)	4						CATGAATACGGGCTACCTTGA	0.562													41	75					0	0	0.008740	0	0
IVNS1ABP	10625	broad.mit.edu	37	1	185276156	185276156	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:185276156A>G	uc001grl.2	-	7	1270	c.647T>C	c.(646-648)CTG>CCG	p.L216P	IVNS1ABP_uc001grj.2_5'Flank|IVNS1ABP_uc009wyj.2_5'UTR|IVNS1ABP_uc009wyk.2_RNA	NM_006469	NP_006460	Q9Y6Y0	NS1BP_HUMAN	influenza virus NS1A binding protein	216	Sufficient for AHR interaction and signaling.|BACK.				interspecies interaction between organisms|response to virus|RNA splicing|transcription from RNA polymerase III promoter	cytoplasm|cytoskeleton|spliceosomal complex|transcription factor complex				ovary(4)|central_nervous_system(1)	5						CTCTTCCATCAGCTCTTCCAG	0.358													14	29					0	0	0.001855	0	0
HMCN1	83872	broad.mit.edu	37	1	186017874	186017874	+	Splice_Site	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:186017874G>A	uc001grq.1	+	42	6710	c.6481_splice	c.e42-1	p.I2161_splice		NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor						response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						TTTGTTTTCAGATTGAAGATG	0.313													23	29					0	0	0.004656	0	0
HMCN1	83872	broad.mit.edu	37	1	186114634	186114634	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:186114634C>T	uc001grq.1	+	92	14595	c.14366C>T	c.(14365-14367)CCC>CTC	p.P4789L	HMCN1_uc001grs.1_Missense_Mutation_p.P358L	NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	4789	TSP type-1 5.				response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						AACCCTCCTCCCTCCAATGGG	0.577													10	25					0	0	0.006214	0	0
PRG4	10216	broad.mit.edu	37	1	186278982	186278982	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:186278982G>A	uc001gru.3	+	8	3530	c.3479G>A	c.(3478-3480)GGG>GAG	p.G1160E	PRG4_uc001grt.3_Missense_Mutation_p.G1119E|PRG4_uc009wyl.2_Missense_Mutation_p.G1067E|PRG4_uc009wym.2_Missense_Mutation_p.G1026E|PRG4_uc010poo.1_RNA	NM_005807	NP_005798	Q92954	PRG4_HUMAN	proteoglycan 4 isoform A	1160	Hemopexin-like 1.				cell proliferation|immune response	extracellular region	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						TTGCGCAATGGGACATTAGTT	0.363													23	74					0	0	0.003330	0	0
FAM5C	339479	broad.mit.edu	37	1	190067341	190067341	+	Missense_Mutation	SNP	A	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:190067341A>T	uc001gse.1	-	8	2340	c.2108T>A	c.(2107-2109)CTA>CAA	p.L703Q	FAM5C_uc010pot.1_Missense_Mutation_p.L601Q	NM_199051	NP_950252	Q76B58	FAM5C_HUMAN	family with sequence similarity 5, member C	703						extracellular region				lung(2)|ovary(1)|kidney(1)|skin(1)	5	Prostate(682;0.198)					GATCTCTAGTAGTTGCAAAAG	0.483													23	50					0	0	0.012319	0	0
FAM5C	339479	broad.mit.edu	37	1	190250722	190250722	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:190250722C>T	uc001gse.1	-	3	627	c.395G>A	c.(394-396)GGG>GAG	p.G132E	FAM5C_uc010pot.1_Intron	NM_199051	NP_950252	Q76B58	FAM5C_HUMAN	family with sequence similarity 5, member C	132						extracellular region				lung(2)|ovary(1)|kidney(1)|skin(1)	5	Prostate(682;0.198)					GAAATGTGTCCCATATTTCTT	0.453													14	40					0	0	0.003163	0	0
FAM5C	339479	broad.mit.edu	37	1	190424004	190424004	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:190424004C>T	uc001gse.1	-	2	249	c.17G>A	c.(16-18)AGA>AAA	p.R6K	FAM5C_uc010pot.1_5'UTR	NM_199051	NP_950252	Q76B58	FAM5C_HUMAN	family with sequence similarity 5, member C	6						extracellular region				lung(2)|ovary(1)|kidney(1)|skin(1)	5	Prostate(682;0.198)					AGCACCAGCTCTGCTTCGCCA	0.468													9	15					0	0	0.004482	0	0
RGS18	64407	broad.mit.edu	37	1	192153620	192153620	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:192153620G>A	uc001gsg.2	+	5	820	c.644G>A	c.(643-645)CGA>CAA	p.R215Q		NM_130782	NP_570138	Q9NS28	RGS18_HUMAN	regulator of G-protein signalling 18	215					negative regulation of signal transduction	cytoplasm|plasma membrane	GTPase activator activity|signal transducer activity			ovary(3)	3						CTTAGGAGACGATCACGCTCA	0.358													14	34					0	0	0.001855	0	0
CDC73	79577	broad.mit.edu	37	1	193205437	193205437	+	Silent	SNP	T	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:193205437T>C	uc001gtb.2	+	15	1611	c.1368T>C	c.(1366-1368)GGT>GGC	p.G456G		NM_024529	NP_078805	Q6P1J9	CDC73_HUMAN	parafibromin	456					cell cycle|histone H2B ubiquitination|histone monoubiquitination|transcription, DNA-dependent	Cdc73/Paf1 complex	protein binding			parathyroid(46)|ovary(1)|breast(1)|pancreas(1)	49						AGTTCAAAGGTTGGCCATGGC	0.448									Hyperparathyroidism_Familial_Isolated|Hyperparathyroidism-Jaw_Tumor_Syndrome				54	99					0	0	0.014410	0	0
KCNT2	343450	broad.mit.edu	37	1	196197413	196197413	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:196197413G>A	uc001gtd.1	-	28	3409	c.3349C>T	c.(3349-3351)CGA>TGA	p.R1117*	KCNT2_uc009wyt.1_RNA|KCNT2_uc001gte.1_Nonsense_Mutation_p.R1050*|KCNT2_uc001gtf.1_Nonsense_Mutation_p.R1093*|KCNT2_uc001gtg.1_RNA	NM_198503	NP_940905	Q6UVM3	KCNT2_HUMAN	potassium channel, subfamily T, member 2	1117	Cytoplasmic (Potential).					voltage-gated potassium channel complex	ATP binding|calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(5)|breast(1)|skin(1)	7						CTGTTTCTTCGACTGGGCTCA	0.368													8	35					0	0	0.008291	0	0
KCNT2	343450	broad.mit.edu	37	1	196397372	196397372	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:196397372C>T	uc001gtd.1	-	10	907	c.847G>A	c.(847-849)GAG>AAG	p.E283K	KCNT2_uc009wyt.1_RNA|KCNT2_uc001gte.1_Missense_Mutation_p.E283K|KCNT2_uc001gtf.1_Missense_Mutation_p.E283K|KCNT2_uc001gtg.1_Intron|KCNT2_uc009wyu.2_Missense_Mutation_p.E283K|KCNT2_uc009wyv.1_Missense_Mutation_p.E258K	NM_198503	NP_940905	Q6UVM3	KCNT2_HUMAN	potassium channel, subfamily T, member 2	283	Cytoplasmic (Potential).					voltage-gated potassium channel complex	ATP binding|calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(5)|breast(1)|skin(1)	7						TTTTGTCTCTCCATCCACAAA	0.358													22	49					0	0	0.004656	0	0
KCNT2	343450	broad.mit.edu	37	1	196434428	196434428	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:196434428G>A	uc001gtd.1	-	8	693	c.633C>T	c.(631-633)TTC>TTT	p.F211F	KCNT2_uc009wyt.1_RNA|KCNT2_uc001gte.1_Silent_p.F211F|KCNT2_uc001gtf.1_Silent_p.F211F|KCNT2_uc001gtg.1_RNA|KCNT2_uc009wyu.2_Silent_p.F211F|KCNT2_uc009wyv.1_Silent_p.F186F	NM_198503	NP_940905	Q6UVM3	KCNT2_HUMAN	potassium channel, subfamily T, member 2	211	Helical; Name=Segment S5; (Potential).					voltage-gated potassium channel complex	ATP binding|calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(5)|breast(1)|skin(1)	7						CTTACCAGGTGAAGATAAGGC	0.269													26	54					0	0	0.007291	0	0
KCNT2	343450	broad.mit.edu	37	1	196451491	196451491	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:196451491C>T	uc001gtd.1	-	4	354	c.294G>A	c.(292-294)GTG>GTA	p.V98V	KCNT2_uc001gte.1_Silent_p.V98V|KCNT2_uc001gtf.1_Silent_p.V98V|KCNT2_uc001gtg.1_RNA|KCNT2_uc009wyu.2_Silent_p.V98V|KCNT2_uc009wyv.1_Silent_p.V98V	NM_198503	NP_940905	Q6UVM3	KCNT2_HUMAN	potassium channel, subfamily T, member 2	98	Extracellular (Potential).					voltage-gated potassium channel complex	ATP binding|calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(5)|breast(1)|skin(1)	7						GACTTCTGTTCACCCAAAAGA	0.284													8	15					0	0	0.004482	0	0
CFH	3075	broad.mit.edu	37	1	196694352	196694352	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:196694352G>A	uc001gtj.3	+	12	2038	c.1798G>A	c.(1798-1800)GGA>AGA	p.G600R		NM_000186	NP_000177	P08603	CFAH_HUMAN	complement factor H isoform a precursor	600	Sushi 10.				complement activation, alternative pathway	extracellular space				skin(4)|ovary(1)|breast(1)	6						CTGCAAACCAGGATTTACAAT	0.398													14	30					0	0	0.003163	0	0
CFH	3075	broad.mit.edu	37	1	196715117	196715117	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:196715117C>T	uc001gtj.3	+	21	3721	c.3481C>T	c.(3481-3483)CCA>TCA	p.P1161S		NM_000186	NP_000177	P08603	CFAH_HUMAN	complement factor H isoform a precursor	1161	Sushi 19.				complement activation, alternative pathway	extracellular space				skin(4)|ovary(1)|breast(1)	6						GTCAGAACCACCAAAATGCTT	0.368													8	23					0	0	0.001855	0	0
CFH	3075	broad.mit.edu	37	1	196716363	196716363	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:196716363C>T	uc001gtj.3	+	22	3856	c.3616C>T	c.(3616-3618)CGT>TGT	p.R1206C		NM_000186	NP_000177	P08603	CFAH_HUMAN	complement factor H isoform a precursor	1206	Sushi 20.				complement activation, alternative pathway	extracellular space				skin(4)|ovary(1)|breast(1)	6						ACGGGGATATCGTCTTTCATC	0.378													27	44					0	0	0.007291	0	0
CFHR3	10878	broad.mit.edu	37	1	196759217	196759217	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:196759217G>A	uc001gtl.2	+	5	743	c.656G>A	c.(655-657)GGT>GAT	p.G219D	CFHR3_uc010poy.1_Missense_Mutation_p.G158D|CFHR1_uc001gtm.2_Intron	NM_021023	NP_066303	Q02985	FHR3_HUMAN	complement factor H-related 3 precursor	219	Sushi 4.					extracellular space					0						ATTAGCAATGGTGATACCACC	0.383													21	67					0	0	0.004656	0	0
CFHR3	10878	broad.mit.edu	37	1	196762596	196762596	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:196762596C>T	uc001gtl.2	+	6	1033	c.946C>T	c.(946-948)CAA>TAA	p.Q316*	CFHR3_uc010poy.1_Nonsense_Mutation_p.Q255*|CFHR1_uc001gtm.2_Intron	NM_021023	NP_066303	Q02985	FHR3_HUMAN	complement factor H-related 3 precursor	316	Sushi 5.					extracellular space					0						TCTATCATTTCAAGCAGTGTG	0.373													16	53					0	0	0.007413	0	0
CFHR2	3080	broad.mit.edu	37	1	196928152	196928152	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:196928152C>T	uc001gtq.1	+	5	832	c.755C>T	c.(754-756)TCA>TTA	p.S252L	CFHR2_uc001gtr.1_Missense_Mutation_p.S128L	NM_005666	NP_005657	P36980	FHR2_HUMAN	H factor (complement)-like 3 precursor	252	Sushi 4.					extracellular region				skin(2)|ovary(1)	3						AAATCTCATTCATTTCGAGCA	0.323													15	34					0	0	0.006122	0	0
CFHR5	81494	broad.mit.edu	37	1	196952085	196952085	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:196952085C>T	uc001gts.3	+	2	257	c.129C>T	c.(127-129)TCC>TCT	p.S43S		NM_030787	NP_110414	Q9BXR6	FHR5_HUMAN	complement factor H-related 5 precursor	43	Sushi 1.				complement activation, alternative pathway	extracellular region				breast(1)|skin(1)	2						ACCCTTTTTCCCAAGTTCCTA	0.348													23	49					0	0	0.014323	0	0
CFHR5	81494	broad.mit.edu	37	1	196953159	196953159	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:196953159G>A	uc001gts.3	+	3	450	c.322G>A	c.(322-324)GAT>AAT	p.D108N		NM_030787	NP_110414	Q9BXR6	FHR5_HUMAN	complement factor H-related 5 precursor	108	Sushi 2.				complement activation, alternative pathway	extracellular region				breast(1)|skin(1)	2						TCTGGAAGGTGATACTGTACA	0.378													14	30					0	0	0.001855	0	0
CFHR5	81494	broad.mit.edu	37	1	196971768	196971768	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:196971768G>A	uc001gts.3	+	8	1432	c.1304G>A	c.(1303-1305)CGA>CAA	p.R435Q		NM_030787	NP_110414	Q9BXR6	FHR5_HUMAN	complement factor H-related 5 precursor	435	Sushi 7.				complement activation, alternative pathway	extracellular region				breast(1)|skin(1)	2						AAAGATGGACGATGGCAATCA	0.333													6	20					0	0	0.001168	0	0
F13B	2165	broad.mit.edu	37	1	197009650	197009650	+	Splice_Site	SNP	A	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:197009650A>C	uc001gtt.1	-	11	1996	c.1952_splice	c.e11+1	p.S651_splice		NM_001994	NP_001985	P05160	F13B_HUMAN	coagulation factor XIII B subunit precursor						blood coagulation	extracellular region				upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						AAAACTTCTTACCTTTGTCTT	0.299													14	24					0	0	0.001855	0	0
CRB1	23418	broad.mit.edu	37	1	197326022	197326022	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:197326022C>T	uc001gtz.2	+	5	1185	c.1050C>T	c.(1048-1050)TCC>TCT	p.S350S	CRB1_uc010poz.1_Silent_p.S281S|CRB1_uc001gty.1_Silent_p.S350S|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Silent_p.S238S|CRB1_uc010ppb.1_Silent_p.S350S|CRB1_uc010ppc.1_RNA	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	350	Extracellular (Potential).|EGF-like 9.				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						CCTGCCAGTCCAATGGGGAAT	0.473													20	36					0	0	0.007413	0	0
CRB1	23418	broad.mit.edu	37	1	197390629	197390629	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:197390629C>T	uc001gtz.2	+	6	1806	c.1671C>T	c.(1669-1671)TTC>TTT	p.F557F	CRB1_uc010poz.1_Silent_p.F488F|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Silent_p.F445F|CRB1_uc010ppb.1_Silent_p.F557F|CRB1_uc010ppc.1_RNA|CRB1_uc010ppd.1_Silent_p.F38F|CRB1_uc001gub.1_Silent_p.F206F	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	557	Extracellular (Potential).|Laminin G-like 1.				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						TGCTTCTGTTCATTTCCCACA	0.448													38	83					0	0	0.011902	0	0
CRB1	23418	broad.mit.edu	37	1	197404044	197404044	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:197404044C>T	uc001gtz.2	+	9	3186	c.3051C>T	c.(3049-3051)AGC>AGT	p.S1017S	CRB1_uc010poz.1_Silent_p.S993S|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Silent_p.S905S|CRB1_uc010ppb.1_Intron|CRB1_uc010ppd.1_Silent_p.S498S|CRB1_uc001gub.1_Silent_p.S666S	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	1017	Extracellular (Potential).|Laminin G-like 3.				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						GTGGCAACAGCTTTTATATGC	0.398													24	44					0	0	0.003330	0	0
ATP6V1G3	127124	broad.mit.edu	37	1	198498311	198498311	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:198498311C>T	uc001gup.2	-	3	189	c.83G>A	c.(82-84)AGA>AAA	p.R28K	ATP6V1G3_uc009wzd.2_Missense_Mutation_p.G34E|ATP6V1G3_uc001guo.2_Nonsense_Mutation_p.W43*	NM_133262	NP_573569	Q96LB4	VATG3_HUMAN	ATPase, H+ transporting, lysosomal, V1 subunit	28	Potential.				cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	cytosol|plasma membrane|vacuolar proton-transporting V-type ATPase complex	ATPase binding			central_nervous_system(1)	1						CTTTCCTTTTCCTGAAAATTA	0.249													17	52					0	0	0.004007	0	0
PTPRC	5788	broad.mit.edu	37	1	198687359	198687359	+	Silent	SNP	T	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:198687359T>C	uc001gur.1	+	14	1761	c.1581T>C	c.(1579-1581)GTT>GTC	p.V527V	PTPRC_uc001gus.1_Silent_p.V479V|PTPRC_uc001gut.1_Silent_p.V366V|PTPRC_uc009wzf.1_Silent_p.V415V|PTPRC_uc010ppg.1_Silent_p.V463V	NM_002838	NP_002829	P08575	PTPRC_HUMAN	protein tyrosine phosphatase, receptor type, C	527	Extracellular (Potential).|Fibronectin type-III 2.				axon guidance|B cell proliferation|B cell receptor signaling pathway|defense response to virus|immunoglobulin biosynthetic process|negative regulation of cytokine-mediated signaling pathway|negative regulation of protein kinase activity|negative regulation of T cell mediated cytotoxicity|positive regulation of antigen receptor-mediated signaling pathway|positive regulation of B cell proliferation|positive regulation of protein kinase activity|positive regulation of T cell proliferation|regulation of S phase|release of sequestered calcium ion into cytosol|T cell differentiation|T cell receptor signaling pathway	focal adhesion|integral to plasma membrane|membrane raft	protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			breast(4)|skin(3)|ovary(2)|lung(1)|kidney(1)|pancreas(1)	12						ATACTCTGGTTAGAAATGAGT	0.393													11	23					0	0	0.008291	0	0
NR5A2	2494	broad.mit.edu	37	1	200017821	200017821	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:200017821G>A	uc001gvb.2	+	5	1191	c.985G>A	c.(985-987)GAG>AAG	p.E329K	NR5A2_uc001gvc.2_Missense_Mutation_p.E283K|NR5A2_uc009wzh.2_Missense_Mutation_p.E289K|NR5A2_uc010pph.1_Missense_Mutation_p.E257K	NM_205860	NP_995582	O00482	NR5A2_HUMAN	nuclear receptor subfamily 5, group A, member 2	329					embryo development|positive regulation of viral genome replication|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	cytoplasm|nucleoplasm	lipid binding|protein binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|steroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2	Prostate(682;0.19)					TTTGCAGCAAGAGCAGGCTAA	0.498													23	60					0	0	0.003330	0	0
KIF14	9928	broad.mit.edu	37	1	200562861	200562861	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:200562861G>A	uc010ppk.1	-	15	3025	c.2586C>T	c.(2584-2586)ATC>ATT	p.I862I	KIF14_uc010ppj.1_Silent_p.I371I	NM_014875	NP_055690	Q15058	KIF14_HUMAN	kinesin family member 14	862	FHA.				microtubule-based movement	cytoplasm|microtubule|nucleus|spindle	ATP binding|microtubule motor activity|protein binding			breast(3)|ovary(2)|skin(2)	7						CCCCAACTGGGATAATACTCA	0.308													26	83					0	0	0.010818	0	0
KIF21B	23046	broad.mit.edu	37	1	200943941	200943941	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:200943941C>T	uc001gvs.1	-	34	5032	c.4715G>A	c.(4714-4716)TGG>TAG	p.W1572*	KIF21B_uc001gvr.1_Nonsense_Mutation_p.W1559*|KIF21B_uc009wzl.1_Nonsense_Mutation_p.W1572*|KIF21B_uc010ppn.1_Nonsense_Mutation_p.W1559*	NM_017596	NP_060066	O75037	KI21B_HUMAN	kinesin family member 21B	1572	WD 6.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)|skin(3)	6						GTCCACGTTCCAGACCTTGAT	0.602													44	96					0	0	0.014410	0	0
KIF21B	23046	broad.mit.edu	37	1	200950134	200950134	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:200950134G>A	uc001gvs.1	-	29	4250	c.3933C>T	c.(3931-3933)ATC>ATT	p.I1311I	KIF21B_uc001gvr.1_Silent_p.I1298I|KIF21B_uc009wzl.1_Silent_p.I1311I|KIF21B_uc010ppn.1_Silent_p.I1298I	NM_017596	NP_060066	O75037	KI21B_HUMAN	kinesin family member 21B	1311	WD 1.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)|skin(3)	6						CCAGGCAGAGGATGGGCTTGG	0.612													17	41					0	0	0.007413	0	0
KIF21B	23046	broad.mit.edu	37	1	200968483	200968483	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:200968483C>T	uc001gvs.1	-	13	2196	c.1879G>A	c.(1879-1881)GAG>AAG	p.E627K	KIF21B_uc001gvr.1_Missense_Mutation_p.E627K|KIF21B_uc009wzl.1_Missense_Mutation_p.E627K|KIF21B_uc010ppn.1_Missense_Mutation_p.E627K	NM_017596	NP_060066	O75037	KI21B_HUMAN	kinesin family member 21B	627					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)|skin(3)	6						GCACCCTTCTCCTCGGGGTCT	0.627													35	50					0	0	0.004878	0	0
CACNA1S	779	broad.mit.edu	37	1	201046156	201046156	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:201046156G>A	uc001gvv.2	-	12	1946	c.1719C>T	c.(1717-1719)TTC>TTT	p.F573F		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	573	II.|Helical; Name=S5 of repeat II; (Potential).				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	CCAGGAGGGCGAAGATGACGA	0.527													6	70					0	0	0.001168	0	0
IGFN1	91156	broad.mit.edu	37	1	201184950	201184950	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:201184950C>T	uc001gwc.2	+	4	1531	c.759C>T	c.(757-759)CTC>CTT	p.L253L	IGFN1_uc001gwb.2_Intron	NM_178275	NP_840059			RecName: Full=Immunoglobulin-like and fibronectin type III domain-containing protein 1; AltName: Full=EEF1A2-binding protein 1; AltName: Full=KY-interacting protein 1;											ovary(2)|pancreas(1)	3						AGGCCGAGCTCACTCTGCAAG	0.632													7	27					0	0	0.003080	0	0
PKP1	5317	broad.mit.edu	37	1	201294248	201294248	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:201294248C>T	uc001gwd.2	+	12	2328	c.2077C>T	c.(2077-2079)CGA>TGA	p.R693*	PKP1_uc001gwe.2_Nonsense_Mutation_p.R672*|PKP1_uc009wzm.2_Nonsense_Mutation_p.R280*	NM_000299	NP_000290	Q13835	PKP1_HUMAN	plakophilin 1 isoform 1b	693	ARM 9.				cell adhesion|cellular component disassembly involved in apoptosis|multicellular organismal development	desmosome|intermediate filament|nucleus	intermediate filament binding|signal transducer activity|structural constituent of epidermis			ovary(2)	2						CAACCTGTGCCGAAGCAGGTG	0.617													32	60					0	0	0.012213	0	0
PKP1	5317	broad.mit.edu	37	1	201297943	201297943	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:201297943G>A	uc001gwd.2	+	14	2474	c.2223G>A	c.(2221-2223)AGG>AGA	p.R741R	PKP1_uc001gwe.2_Silent_p.R720R|PKP1_uc009wzm.2_Silent_p.R328R	NM_000299	NP_000290	Q13835	PKP1_HUMAN	plakophilin 1 isoform 1b	741					cell adhesion|cellular component disassembly involved in apoptosis|multicellular organismal development	desmosome|intermediate filament|nucleus	intermediate filament binding|signal transducer activity|structural constituent of epidermis			ovary(2)	2						ACAGCCTCAGGAACTTCACCT	0.522													59	126					0	0	0.014410	0	0
TNNT2	7139	broad.mit.edu	37	1	201332529	201332529	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:201332529C>T	uc001gwf.2	-	12	564	c.495G>A	c.(493-495)GAG>GAA	p.E165E	TNNT2_uc009wzn.2_5'Flank|TNNT2_uc009wzo.2_5'Flank|TNNT2_uc009wzp.2_5'Flank|TNNT2_uc001gwg.2_Silent_p.E155E|TNNT2_uc001gwh.2_Silent_p.E150E|TNNT2_uc001gwi.2_Silent_p.E125E|TNNT2_uc009wzr.2_Silent_p.E96E|TNNT2_uc001gwj.1_RNA|TNNT2_uc009wzs.1_Silent_p.E130E|TNNT2_uc001gwk.1_Silent_p.E96E|TNNT2_uc009wzt.1_Silent_p.E155E	NM_000364	NP_000355	P45379	TNNT2_HUMAN	troponin T type 2, cardiac isoform 1	165					ATP catabolic process|muscle filament sliding|negative regulation of ATPase activity|positive regulation of ATPase activity|regulation of heart contraction|response to calcium ion|response to calcium ion|ventricular cardiac muscle tissue morphogenesis	cytosol|troponin complex	actin binding|tropomyosin binding|troponin C binding|troponin I binding				0						GTCGAGCCCTCTCTTCCTGAT	0.507													45	81					0	0	0.011902	0	0
LMOD1	25802	broad.mit.edu	37	1	201869306	201869306	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:201869306C>T	uc001gxb.2	-	2	1083	c.835G>A	c.(835-837)GAA>AAA	p.E279K	LMOD1_uc010ppu.1_Missense_Mutation_p.E228K	NM_012134	NP_036266	P29536	LMOD1_HUMAN	leiomodin 1 (smooth muscle)	279	8.|8 X approximate tandem repeats.				muscle contraction	cytoskeleton|cytosol|membrane fraction	tropomyosin binding			ovary(1)|pancreas(1)|skin(1)	3						GCTTCCTTTTCATGTAAGGGT	0.493													12	23					0	0	0.002450	0	0
PTPN7	5778	broad.mit.edu	37	1	202123389	202123389	+	Silent	SNP	C	T	T	rs147405290		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:202123389C>T	uc001gxm.1	-	6	662	c.531G>A	c.(529-531)TCG>TCA	p.S177S	PTPN7_uc001gxl.1_Silent_p.S216S|PTPN7_uc001gxn.1_Silent_p.S177S|PTPN7_uc010ppv.1_5'UTR|PTPN7_uc010ppw.1_Silent_p.S125S|PTPN7_uc010ppx.1_Silent_p.S251S|PTPN7_uc010ppy.1_Intron|PTPN7_uc001gxo.1_Silent_p.S129S	NM_002832	NP_002823	P35236	PTN7_HUMAN	protein tyrosine phosphatase, non-receptor type	177	Tyrosine-protein phosphatase.					cytosol|internal side of plasma membrane	protein binding|protein tyrosine phosphatase activity			skin(1)	1						CCCAGAAGTCCGACACAGTGT	0.592													15	33					0	0	0.004007	0	0
PPP1R12B	4660	broad.mit.edu	37	1	202391754	202391754	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:202391754C>T	uc001gya.1	+	3	573	c.429C>T	c.(427-429)TTC>TTT	p.F143F	PPP1R12B_uc001gxy.2_Silent_p.F143F|PPP1R12B_uc009xad.1_Intron|PPP1R12B_uc009xae.1_Silent_p.F143F|PPP1R12B_uc001gxz.1_Silent_p.F143F	NM_002481	NP_002472	O60237	MYPT2_HUMAN	protein phosphatase 1, regulatory (inhibitor)	143	ANK 3.				regulation of muscle contraction|signal transduction	cytoplasm	enzyme activator activity			ovary(3)	3			BRCA - Breast invasive adenocarcinoma(75;0.166)			GCAGGTATTTCATTAATCACG	0.413													15	61					0	0	0.006122	0	0
KDM5B	10765	broad.mit.edu	37	1	202698951	202698951	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:202698951G>A	uc001gyf.2	-	26	4497	c.4381C>T	c.(4381-4383)CGT>TGT	p.R1461C	KDM5B_uc009xag.2_Missense_Mutation_p.R1497C|KDM5B_uc001gyg.1_Missense_Mutation_p.R1303C	NM_006618	NP_006609	Q9UGL1	KDM5B_HUMAN	jumonji, AT rich interactive domain 1B	1461					negative regulation of transcription, DNA-dependent	nucleolus	DNA binding|histone demethylase activity (H3-dimethyl-K4 specific)|histone demethylase activity (H3-trimethyl-K4 specific)|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			ovary(2)|breast(2)|urinary_tract(1)	5						TCAGCAGAACGAACTAATTCA	0.468													48	90					0	0	0.014410	0	0
KDM5B	10765	broad.mit.edu	37	1	202709807	202709807	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:202709807G>A	uc001gyf.2	-	20	3195	c.3079C>T	c.(3079-3081)CTG>TTG	p.L1027L	KDM5B_uc009xag.2_Silent_p.L1063L|KDM5B_uc001gyg.1_Silent_p.L869L	NM_006618	NP_006609	Q9UGL1	KDM5B_HUMAN	jumonji, AT rich interactive domain 1B	1027					negative regulation of transcription, DNA-dependent	nucleolus	DNA binding|histone demethylase activity (H3-dimethyl-K4 specific)|histone demethylase activity (H3-trimethyl-K4 specific)|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			ovary(2)|breast(2)|urinary_tract(1)	5						CCAACCTGCAGGCCCTCTACA	0.368													22	40					0	0	0.002780	0	0
PLEKHA6	22874	broad.mit.edu	37	1	204228696	204228696	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:204228696G>A	uc001hau.2	-	8	1014	c.697C>T	c.(697-699)CCG>TCG	p.P233S	PLEKHA6_uc009xaw.1_5'Flank|PLEKHA6_uc009xax.1_5'Flank|PLEKHA6_uc009xay.1_5'Flank|PLEKHA6_uc009xaz.1_5'Flank|PLEKHA6_uc009xba.1_5'Flank|PLEKHA6_uc009xbb.1_5'Flank|PLEKHA6_uc009xbc.1_5'Flank	NM_014935	NP_055750	Q9Y2H5	PKHA6_HUMAN	phosphoinositol 3-phosphate-binding protein-3	233	Pro-rich.									ovary(3)|pancreas(1)	4	all_cancers(21;0.0222)|Breast(84;0.179)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|BRCA - Breast invasive adenocarcinoma(75;0.0833)|Kidney(21;0.0934)|Epithelial(59;0.229)			GCTTTCACCGGAGGCTCTTTC	0.647													19	45					0	0	0.014323	0	0
NFASC	23114	broad.mit.edu	37	1	204943918	204943918	+	Nonsense_Mutation	SNP	A	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:204943918A>T	uc001hbj.2	+	14	1853	c.1525A>T	c.(1525-1527)AAA>TAA	p.K509*	NFASC_uc001hbh.2_Nonsense_Mutation_p.K509*|NFASC_uc010pqz.1_Nonsense_Mutation_p.K503*|NFASC_uc010pra.1_Nonsense_Mutation_p.K520*|NFASC_uc001hbi.2_Nonsense_Mutation_p.K520*|NFASC_uc010prb.1_Nonsense_Mutation_p.K520*|NFASC_uc010prc.1_Nonsense_Mutation_p.K76*|NFASC_uc001hbk.1_Nonsense_Mutation_p.K330*	NM_001005388	NP_001005388	O94856	NFASC_HUMAN	neurofascin isoform 1 precursor	509	Extracellular (Potential).|Ig-like C2-type 5.				axon guidance|cell adhesion|myelination|peripheral nervous system development	integral to membrane|node of Ranvier|plasma membrane	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6	all_cancers(21;0.0375)|Breast(84;0.0437)|all_epithelial(62;0.171)|Prostate(682;0.19)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.158)			CATCCTGGGCAAAGCTGAAAA	0.527													9	83					0	0	0.006214	0	0
CNTN2	6900	broad.mit.edu	37	1	205034309	205034309	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:205034309G>A	uc001hbr.2	+	13	1883	c.1614G>A	c.(1612-1614)ATG>ATA	p.M538I	CNTN2_uc001hbq.1_Missense_Mutation_p.M429I|CNTN2_uc001hbs.2_Missense_Mutation_p.M326I	NM_005076	NP_005067	Q02246	CNTN2_HUMAN	contactin 2 precursor	538	Ig-like C2-type 6.				axon guidance|clustering of voltage-gated potassium channels	anchored to membrane|juxtaparanode region of axon|myelin sheath|node of Ranvier|synapse part	identical protein binding			ovary(1)	1	all_cancers(21;0.144)|Breast(84;0.0437)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.158)			ACCCCACCATGGACCTCACCT	0.567													40	77					0	0	0.006999	0	0
CNTN2	6900	broad.mit.edu	37	1	205042356	205042356	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:205042356G>A	uc001hbr.2	+	22	3274	c.3005G>A	c.(3004-3006)AGG>AAG	p.R1002K	CNTN2_uc001hbs.2_Missense_Mutation_p.R790K	NM_005076	NP_005067	Q02246	CNTN2_HUMAN	contactin 2 precursor	1002	Fibronectin type-III 4.				axon guidance|clustering of voltage-gated potassium channels	anchored to membrane|juxtaparanode region of axon|myelin sheath|node of Ranvier|synapse part	identical protein binding			ovary(1)	1	all_cancers(21;0.144)|Breast(84;0.0437)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.158)			CACATCGTGAGGAATGGAGGT	0.562													21	58					0	0	0.014323	0	0
NUAK2	81788	broad.mit.edu	37	1	205273195	205273195	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:205273195C>T	uc001hce.2	-	7	1397	c.1270G>A	c.(1270-1272)GAG>AAG	p.E424K		NM_030952	NP_112214	Q9H093	NUAK2_HUMAN	NUAK family, SNF1-like kinase, 2	424					actin cytoskeleton organization|apoptosis|cellular response to glucose starvation|negative regulation of apoptosis		ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(3)|stomach(1)|breast(1)	5	Breast(84;0.186)		BRCA - Breast invasive adenocarcinoma(75;0.117)			GGAGGGTCCTCCTGTACCCCT	0.627													30	44					0	0	0.010818	0	0
LEMD1	93273	broad.mit.edu	37	1	205389633	205389633	+	Missense_Mutation	SNP	T	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:205389633T>A	uc001hcj.1	-	2	134	c.32A>T	c.(31-33)AAA>ATA	p.K11I	LEMD1_uc001hci.1_Missense_Mutation_p.K11I|LEMD1_uc001hck.1_RNA|LEMD1_uc001hcl.1_Missense_Mutation_p.K11I|LEMD1_uc001hcm.1_RNA|LEMD1_uc001hcn.1_RNA			Q68G75	LEMD1_HUMAN	RecName: Full=LEM domain-containing protein 1;          Short=LEMP-1; AltName: Full=Cancer/testis antigen 50;          Short=CT50;	11	LEM.					integral to membrane|nuclear envelope					0	Breast(84;0.247)		BRCA - Breast invasive adenocarcinoma(75;0.0938)			GTTCTGCAATTTACAGTCACT	0.358													25	36					0	0	0.004656	0	0
CDK18	5129	broad.mit.edu	37	1	205494284	205494285	+	Nonsense_Mutation	DNP	GA	AT	AT			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:205494284_205494285GA>AT	uc001hcr.2	+	5	726_727	c.507_508GA>AT	c.(505-510)GGGAAA>GGATAA	p.K170*	CDK18_uc010pri.1_Missense_Mutation_p.E160I|CDK18_uc001hcp.2_Nonsense_Mutation_p.K140*|CDK18_uc001hcq.2_Nonsense_Mutation_p.K140*|CDK18_uc010prj.1_Nonsense_Mutation_p.K51*|CDK18_uc001hcs.2_Nonsense_Mutation_p.K51*|CDK18_uc009xbm.1_Nonsense_Mutation_p.K51*	NM_212503	NP_997668	Q07002	CDK18_HUMAN	PCTAIRE protein kinase 3 isoform a	138							ATP binding|cyclin-dependent protein kinase activity|protein binding|signal transducer activity			stomach(2)	2						TTGGCTTTGGGAAACTGGAAAC	0.545													9	27					0	0	0.004672	0	0
CDK18	5129	broad.mit.edu	37	1	205499779	205499779	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:205499779G>A	uc001hcr.2	+	15	1645	c.1426G>A	c.(1426-1428)GAG>AAG	p.E476K	CDK18_uc001hcp.2_Missense_Mutation_p.E446K|CDK18_uc001hcq.2_Missense_Mutation_p.E446K|CDK18_uc010prj.1_Missense_Mutation_p.E357K|CDK18_uc001hcs.2_Missense_Mutation_p.E357K|CDK18_uc001hct.2_RNA	NM_212503	NP_997668	Q07002	CDK18_HUMAN	PCTAIRE protein kinase 3 isoform a	444							ATP binding|cyclin-dependent protein kinase activity|protein binding|signal transducer activity			stomach(2)	2						CTCCCTGAAGGAGATCCAGCT	0.612													13	14					0	0	0.003163	0	0
SLC26A9	115019	broad.mit.edu	37	1	205902072	205902073	+	Splice_Site	DNP	CC	TT	TT			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:205902072_205902073CC>TT	uc001hdq.2	-	3	379	c.265_splice	c.e3+1	p.G89_splice	SLC26A9_uc001hdp.2_Splice_Site_p.G89_splice	NM_052934	NP_443166	Q7LBE3	S26A9_HUMAN	solute carrier family 26, member 9 isoform a							integral to membrane	chloride channel activity|secondary active sulfate transmembrane transporter activity			ovary(1)|skin(1)	2	Breast(84;0.201)		BRCA - Breast invasive adenocarcinoma(75;0.0458)			AGCCCCTTCACCTTGTGGGACC	0.574													11	19					0	0	0.004672	0	0
C1orf186	440712	broad.mit.edu	37	1	206241558	206241558	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:206241558G>A	uc001hdt.1	-	4	870	c.231C>T	c.(229-231)ATC>ATT	p.I77I		NM_001007544	NP_001007545	Q6ZWK4	CA186_HUMAN	hypothetical protein LOC440712	77						integral to membrane					0			BRCA - Breast invasive adenocarcinoma(75;0.0754)			CAGACATTGGGATGTCTCTCT	0.547													64	139					0	0	0.014410	0	0
CTSE	1510	broad.mit.edu	37	1	206319208	206319209	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:206319208_206319209CC>TT	uc001hdu.2	+	3	451_452	c.333_334CC>TT	c.(331-336)AGCCCA>AGTTCA	p.P112S	CTSE_uc001hdv.2_Missense_Mutation_p.P112S|CTSE_uc010prs.1_Missense_Mutation_p.P37S	NM_001910	NP_001901	P14091	CATE_HUMAN	cathepsin E isoform a preproprotein	112					antigen processing and presentation of exogenous peptide antigen via MHC class II|digestion|proteolysis	endosome	aspartic-type endopeptidase activity			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(75;0.0754)			ACTGCACTAGCCCAGCCTGCAG	0.594													12	26					0	0	0.004672	0	0
DYRK3	8444	broad.mit.edu	37	1	206821851	206821851	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:206821851C>T	uc001hej.2	+	3	1476	c.1308C>T	c.(1306-1308)TCC>TCT	p.S436S	DYRK3_uc001hek.2_Intron|DYRK3_uc001hei.2_Silent_p.S416S	NM_003582	NP_003573	O43781	DYRK3_HUMAN	dual-specificity tyrosine-(Y)-phosphorylation	436	Protein kinase.				erythrocyte differentiation	nucleus	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			stomach(2)|central_nervous_system(1)	3	Breast(84;0.183)		BRCA - Breast invasive adenocarcinoma(75;0.166)			TGGAGCAATCCAAACGTGCCA	0.537													67	169					0	0	0.014410	0	0
PIGR	5284	broad.mit.edu	37	1	207108075	207108075	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:207108075C>T	uc001hez.2	-	6	1579	c.1395G>A	c.(1393-1395)AAG>AAA	p.K465K	PIGR_uc009xbz.2_Silent_p.K465K	NM_002644	NP_002635	P01833	PIGR_HUMAN	polymeric immunoglobulin receptor precursor	465	Ig-like V-type 5.|Extracellular (Potential).					extracellular region|integral to plasma membrane	protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3						TCCCTGGTACCTTGAGGTTTG	0.507													8	17					0	0	0.006214	0	0
PIGR	5284	broad.mit.edu	37	1	207112587	207112587	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:207112587C>T	uc001hez.2	-	3	449	c.265G>A	c.(265-267)GAG>AAG	p.E89K	PIGR_uc009xbz.2_Missense_Mutation_p.E89K	NM_002644	NP_002635	P01833	PIGR_HUMAN	polymeric immunoglobulin receptor precursor	89	Ig-like V-type 1.|Extracellular (Potential).					extracellular region|integral to plasma membrane	protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3						GTGCCGTTCTCCGGGAAGTTG	0.587													13	31					0	0	0.013537	0	0
C4BPA	722	broad.mit.edu	37	1	207300216	207300216	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:207300216C>T	uc001hfo.2	+	7	1059	c.865C>T	c.(865-867)CCT>TCT	p.P289S		NM_000715	NP_000706	P04003	C4BPA_HUMAN	complement component 4 binding protein, alpha	289	Sushi 4.				complement activation, classical pathway|innate immune response	extracellular region	protein binding			large_intestine(1)|ovary(1)|central_nervous_system(1)	3						CAAATGGAATCCTTCTCCTCC	0.403													13	42					0	0	0.004007	0	0
CR2	1380	broad.mit.edu	37	1	207647209	207647209	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:207647209T>C	uc001hfw.2	+	11	2136	c.2042T>C	c.(2041-2043)GTT>GCT	p.V681A	CR2_uc001hfv.2_Missense_Mutation_p.V740A|CR2_uc009xch.2_Missense_Mutation_p.V681A	NM_001877	NP_001868	P20023	CR2_HUMAN	complement component (3d/Epstein Barr virus)	681	Sushi 11.|Extracellular (Potential).				complement activation, classical pathway|innate immune response	integral to membrane|plasma membrane	complement receptor activity|protein homodimerization activity			upper_aerodigestive_tract(3)|skin(3)|urinary_tract(1)|ovary(1)	8						GTGGAGCTAGTTAATACGTCC	0.423													34	63					0	0	0.005524	0	0
CR2	1380	broad.mit.edu	37	1	207649738	207649738	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:207649738G>A	uc001hfw.2	+	14	2793	c.2699G>A	c.(2698-2700)TGG>TAG	p.W900*	CR2_uc001hfv.2_Nonsense_Mutation_p.W959*|CR2_uc009xch.2_Intron	NM_001877	NP_001868	P20023	CR2_HUMAN	complement component (3d/Epstein Barr virus)	900	Sushi 14.|Extracellular (Potential).				complement activation, classical pathway|innate immune response	integral to membrane|plasma membrane	complement receptor activity|protein homodimerization activity			upper_aerodigestive_tract(3)|skin(3)|urinary_tract(1)|ovary(1)	8						GAGGGAACCTGGAGCCAACCT	0.423													17	26					0	0	0.006122	0	0
CR1	1378	broad.mit.edu	37	1	207782822	207782822	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:207782822G>A	uc001hfy.2	+	29	4874	c.4734G>A	c.(4732-4734)TGG>TGA	p.W1578*	CR1_uc009xcl.1_Nonsense_Mutation_p.W1128*|CR1_uc001hfx.2_Nonsense_Mutation_p.W2028*	NM_000573	NP_000564	P17927	CR1_HUMAN	complement receptor 1 isoform F precursor	1578	Extracellular (Potential).|Sushi 24.				complement activation, classical pathway|innate immune response	integral to plasma membrane	complement receptor activity			ovary(3)	3						TTGGTGTTTGGAGCAGCCCTC	0.458													22	25					0	0	0.010504	0	0
CD34	947	broad.mit.edu	37	1	208073331	208073331	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:208073331G>A	uc001hgw.1	-	2	355	c.97C>T	c.(97-99)CTT>TTT	p.L33F	CD34_uc001hgx.1_Missense_Mutation_p.L33F|CD34_uc010psj.1_5'UTR	NM_001025109	NP_001020280	P28906	CD34_HUMAN	CD34 antigen isoform a	33	Extracellular (Potential).				cell-cell adhesion|leukocyte migration|regulation of immune response	integral to membrane	carbohydrate binding			ovary(1)	1						TTGTTGTCAAGACTCATGAAC	0.428													14	27					0	0	0.004007	0	0
LOC642587	642587	broad.mit.edu	37	1	209602733	209602733	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:209602733G>A	uc009xcn.2	+	2	474	c.91G>A	c.(91-93)GAA>AAA	p.E31K	LOC642587_uc010psk.1_5'Flank|MIR205_hsa-mir-205|MI0000285_5'Flank	NM_001104548	NP_001098018			hypothetical protein LOC642587												0				OV - Ovarian serous cystadenocarcinoma(81;0.0422)		CAGGCCTGCTGAACTGGGTGC	0.403													8	14					0	0	0.008291	0	0
LAMB3	3914	broad.mit.edu	37	1	209799120	209799120	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:209799120C>T	uc001hhg.2	-	13	2239	c.1849G>A	c.(1849-1851)GAC>AAC	p.D617N	LAMB3_uc009xco.2_Missense_Mutation_p.D617N|LAMB3_uc001hhh.2_Missense_Mutation_p.D617N|LAMB3_uc010psl.1_Intron|hsa-mir-4260|MI0015859_5'Flank	NM_001017402	NP_001017402	Q13751	LAMB3_HUMAN	laminin, beta 3 precursor	617	Domain II.				cell adhesion|epidermis development|hemidesmosome assembly		structural molecule activity			central_nervous_system(2)|skin(2)|large_intestine(1)|ovary(1)	6				OV - Ovarian serous cystadenocarcinoma(81;0.0519)		AGGCCACGGTCCTCCAGCCCA	0.622													28	43					0	0	0.003271	0	0
TRAF3IP3	80342	broad.mit.edu	37	1	209955417	209955417	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:209955417G>A	uc001hho.2	+	17	1870	c.1580G>A	c.(1579-1581)TGG>TAG	p.W527*	TRAF3IP3_uc001hhn.2_Nonsense_Mutation_p.W507*|TRAF3IP3_uc009xcr.2_Nonsense_Mutation_p.W527*	NM_025228	NP_079504	Q9Y228	T3JAM_HUMAN	TRAF3-interacting JNK-activating modulator	527	Helical; Anchor for type IV membrane protein; (Potential).					integral to membrane	protein binding			large_intestine(1)|ovary(1)	2				OV - Ovarian serous cystadenocarcinoma(81;0.045)		TGTGGGCGATGGCTCCCAGTG	0.483													30	64					0	0	0.010818	0	0
IRF6	3664	broad.mit.edu	37	1	209961934	209961934	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:209961934C>T	uc001hhq.1	-	9	1498	c.1235G>A	c.(1234-1236)CGA>CAA	p.R412Q	IRF6_uc010psm.1_Missense_Mutation_p.R317Q|IRF6_uc009xct.1_Missense_Mutation_p.R412Q	NM_006147	NP_006138	O14896	IRF6_HUMAN	interferon regulatory factor 6	412					cell cycle arrest|interferon-gamma-mediated signaling pathway|mammary gland epithelial cell differentiation|negative regulation of cell proliferation|positive regulation of transcription, DNA-dependent|type I interferon-mediated signaling pathway	cytoplasm|nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(81;0.0351)		ATCAAAGGATCGTGTGAAATC	0.488										HNSCC(57;0.16)			9	50					0	0	0.008291	0	0
SYT14	255928	broad.mit.edu	37	1	210334187	210334187	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:210334187C>T	uc009xcv.2	+	8	1540	c.1468C>T	c.(1468-1470)CAA>TAA	p.Q490*	SYT14_uc001hhs.3_Nonsense_Mutation_p.Q554*|SYT14_uc001hht.3_Nonsense_Mutation_p.Q509*|SYT14_uc001hhu.3_RNA|SYT14_uc010psn.1_Nonsense_Mutation_p.Q535*|SYT14_uc010pso.1_Nonsense_Mutation_p.Q452*|SYT14_uc010psp.1_Nonsense_Mutation_p.Q28*	NM_153262	NP_694994	Q8NB59	SYT14_HUMAN	synaptotagmin XIV isoform 4	490	Cytoplasmic (Potential).|C2 2.					integral to membrane				ovary(1)|skin(1)	2				OV - Ovarian serous cystadenocarcinoma(81;0.085)		TTTTGTCTTTCAAGTGGCCCT	0.413													25	57					0	0	0.003954	0	0
SERTAD4	56256	broad.mit.edu	37	1	210415615	210415616	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:210415615_210415616CC>TT	uc001hhy.2	+	4	1183_1184	c.1004_1005CC>TT	c.(1003-1005)TCC>TTT	p.S335F	SERTAD4_uc009xcw.2_Missense_Mutation_p.S335F	NM_019605	NP_062551	Q9NUC0	SRTD4_HUMAN	SERTA domain containing 4	335							protein binding			ovary(1)|pancreas(1)	2				OV - Ovarian serous cystadenocarcinoma(81;0.0237)|all cancers(67;0.127)		TGGAAAAAGTCCTTACGGAAAA	0.391													18	35					0	0	0.004672	0	0
KCNH1	3756	broad.mit.edu	37	1	210857182	210857182	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:210857182G>A	uc001hib.2	-	11	2581	c.2411C>T	c.(2410-2412)TCC>TTC	p.S804F	KCNH1_uc001hic.2_Missense_Mutation_p.S777F	NM_172362	NP_758872	O95259	KCNH1_HUMAN	potassium voltage-gated channel, subfamily H,	804	Cytoplasmic (Potential).				myoblast fusion|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	calmodulin binding|delayed rectifier potassium channel activity|two-component sensor activity			ovary(4)|central_nervous_system(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.0109)|all cancers(67;0.141)|Epithelial(68;0.185)		CCCGGAGGTGGAGGCTGCCTG	0.672													24	56					0	0	0.014323	0	0
KCNH1	3756	broad.mit.edu	37	1	210948696	210948696	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:210948696C>T	uc001hib.2	-	10	2276	c.2106G>A	c.(2104-2106)AGG>AGA	p.R702R	KCNH1_uc001hic.2_Silent_p.R675R	NM_172362	NP_758872	O95259	KCNH1_HUMAN	potassium voltage-gated channel, subfamily H,	702	Cytoplasmic (Potential).|Calmodulin-binding.				myoblast fusion|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	calmodulin binding|delayed rectifier potassium channel activity|two-component sensor activity			ovary(4)|central_nervous_system(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.0109)|all cancers(67;0.141)|Epithelial(68;0.185)		TCACCCTCTTCCTCAAGTTGT	0.448													5	22					0	0	0.001168	0	0
RPS6KC1	26750	broad.mit.edu	37	1	213415276	213415276	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:213415276C>T	uc010ptr.1	+	11	2616	c.2457C>T	c.(2455-2457)TTC>TTT	p.F819F	RPS6KC1_uc001hkd.2_Silent_p.F807F|RPS6KC1_uc010pts.1_Silent_p.F607F|RPS6KC1_uc010ptt.1_Silent_p.F607F|RPS6KC1_uc010ptu.1_Silent_p.F638F|RPS6KC1_uc010ptv.1_Silent_p.F354F|RPS6KC1_uc001hke.2_Silent_p.F638F	NM_012424	NP_036556	Q96S38	KS6C1_HUMAN	ribosomal protein S6 kinase, 52kDa, polypeptide	819	Protein kinase 2.				cell communication|signal transduction	early endosome|membrane	ATP binding|phosphatidylinositol binding|protein binding|protein serine/threonine kinase activity			lung(4)|ovary(3)|breast(1)	8				OV - Ovarian serous cystadenocarcinoma(81;0.00705)|all cancers(67;0.016)|GBM - Glioblastoma multiforme(131;0.0663)|Epithelial(68;0.145)		AAAGCTTATTCCGTATTTGTA	0.393													25	51					0	0	0.006320	0	0
USH2A	7399	broad.mit.edu	37	1	215808041	215808041	+	Silent	SNP	C	T	T	rs144781528		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:215808041C>T	uc001hku.1	-	70	15444	c.15057G>A	c.(15055-15057)TTG>TTA	p.L5019L		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	5019	Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		TTGTTAGGACCAAGCCTGCAA	0.448										HNSCC(13;0.011)			19	56					0	0	0.010504	0	0
USH2A	7399	broad.mit.edu	37	1	215987169	215987169	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:215987169C>T	uc001hku.1	-	49	10035	c.9648G>A	c.(9646-9648)CTG>CTA	p.L3216L		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	3216	Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		CAGTAGAATTCAGAACAAACG	0.438										HNSCC(13;0.011)			28	32					0	0	0.005443	0	0
USH2A	7399	broad.mit.edu	37	1	216051165	216051165	+	Missense_Mutation	SNP	A	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:216051165A>T	uc001hku.1	-	43	9003	c.8616T>A	c.(8614-8616)GAT>GAA	p.D2872E		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	2872	Extracellular (Potential).|Fibronectin type-III 15.				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		ACCGATTTAAATCTTCTGGGG	0.393										HNSCC(13;0.011)			44	96					0	0	0.010771	0	0
USH2A	7399	broad.mit.edu	37	1	216498891	216498891	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:216498891G>A	uc001hku.1	-	6	1286	c.899C>T	c.(898-900)TCA>TTA	p.S300L	USH2A_uc001hkv.2_Missense_Mutation_p.S300L	NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	300	Laminin N-terminal.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		ACGGCAATGTGATTGGGCATG	0.502										HNSCC(13;0.011)			6	32					0	0	0.001984	0	0
SPATA17	128153	broad.mit.edu	37	1	217955562	217955562	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:217955562C>T	uc001hlh.1	+	8	796	c.770C>T	c.(769-771)CCT>CTT	p.P257L	SPATA17_uc009xdr.1_RNA|SPATA17_uc001hli.2_Missense_Mutation_p.P257L	NM_138796	NP_620151	Q96L03	SPT17_HUMAN	spermatogenesis associated 17	257						cytoplasm	calmodulin binding			pancreas(1)	1				OV - Ovarian serous cystadenocarcinoma(81;0.0516)|all cancers(67;0.0891)|GBM - Glioblastoma multiforme(131;0.117)		CGCTACAGGCCTTTGGAGCCA	0.443													22	42					0	0	0.004656	0	0
SLC30A10	55532	broad.mit.edu	37	1	220091654	220091654	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:220091654C>T	uc001hlw.2	-	3	1112	c.901G>A	c.(901-903)GAG>AAG	p.E301K	SLC30A10_uc001hlu.1_RNA|SLC30A10_uc001hlv.2_Missense_Mutation_p.E56K|SLC30A10_uc001hlx.2_Missense_Mutation_p.E76K	NM_018713	NP_061183	Q6XR72	ZNT10_HUMAN	solute carrier family 30 (zinc transporter),	301	Cytoplasmic (Potential).				zinc ion transport	integral to membrane|plasma membrane	cation transmembrane transporter activity				0				GBM - Glioblastoma multiforme(131;0.051)|all cancers(67;0.209)		GCAGCGGTCTCCTTGATAAGC	0.468													39	92					0	0	0.006999	0	0
EPRS	2058	broad.mit.edu	37	1	220191809	220191809	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:220191809G>A	uc001hly.1	-	12	1746	c.1476C>T	c.(1474-1476)ATC>ATT	p.I492I	EPRS_uc010puf.1_Silent_p.I243I|EPRS_uc001hlz.1_Silent_p.I492I|EPRS_uc009xdt.1_Intron	NM_004446	NP_004437	P07814	SYEP_HUMAN	glutamyl-prolyl tRNA synthetase	492	Glutamyl-tRNA synthetase.				glutamyl-tRNA aminoacylation|prolyl-tRNA aminoacylation|protein complex assembly	cytosol|soluble fraction	ATP binding|glutamate-tRNA ligase activity|proline-tRNA ligase activity|protein binding|RNA binding			ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(131;0.0735)	L-Glutamic Acid(DB00142)|L-Proline(DB00172)	TAAACGCCCAGATTTTGTCCC	0.378													14	47					0	0	0.003163	0	0
RAB3GAP2	25782	broad.mit.edu	37	1	220386237	220386237	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:220386237G>A	uc010puk.1	-	4	542	c.378C>T	c.(376-378)GTC>GTT	p.V126V	RAB3GAP2_uc001hmf.2_RNA|RAB3GAP2_uc001hmg.2_5'UTR|RAB3GAP2_uc010pum.1_Silent_p.V126V	NM_012414	NP_036546	Q9H2M9	RBGPR_HUMAN	rab3 GTPase-activating protein, non-catalytic	126					intracellular protein transport	cytoplasm|soluble fraction	GTPase activator activity|protein heterodimerization activity			central_nervous_system(1)	1				GBM - Glioblastoma multiforme(131;0.0443)		ACCCTTCTTCGACATTTAAGG	0.308													10	24					0	0	0.013537	0	0
MARK1	4139	broad.mit.edu	37	1	220752852	220752852	+	Missense_Mutation	SNP	A	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:220752852A>T	uc001hmn.3	+	2	805	c.208A>T	c.(208-210)AAT>TAT	p.N70Y	MARK1_uc001hml.2_Missense_Mutation_p.N70Y|MARK1_uc009xdw.2_Missense_Mutation_p.N70Y|MARK1_uc010pun.1_Missense_Mutation_p.N70Y|MARK1_uc001hmm.3_Missense_Mutation_p.N70Y	NM_018650	NP_061120	Q9P0L2	MARK1_HUMAN	MAP/microtubule affinity-regulating kinase 1	70	ATP (By similarity).|Protein kinase.				intracellular protein kinase cascade	cytoplasm|microtubule cytoskeleton	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(4)|central_nervous_system(2)|skin(2)|stomach(1)|lung(1)	10				GBM - Glioblastoma multiforme(131;0.0407)		AGGGAAGGGAAATTTTGCCAA	0.428													5	35					0	0	0.001168	0	0
MARK1	4139	broad.mit.edu	37	1	220777408	220777408	+	Splice_Site	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:220777408G>A	uc001hmn.3	+	6	1022	c.425_splice	c.e6-1	p.G142_splice	MARK1_uc009xdw.2_Splice_Site_p.G142_splice|MARK1_uc010pun.1_Splice_Site_p.G142_splice|MARK1_uc001hmm.3_Splice_Site_p.G120_splice	NM_018650	NP_061120	Q9P0L2	MARK1_HUMAN	MAP/microtubule affinity-regulating kinase 1						intracellular protein kinase cascade	cytoplasm|microtubule cytoskeleton	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(4)|central_nervous_system(2)|skin(2)|stomach(1)|lung(1)	10				GBM - Glioblastoma multiforme(131;0.0407)		TTCTGATTCAGGTGAAGTATT	0.323													9	32					0	0	0.004482	0	0
MARK1	4139	broad.mit.edu	37	1	220808746	220808746	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:220808746G>A	uc001hmn.3	+	12	1748	c.1151G>A	c.(1150-1152)GGA>GAA	p.G384E	MARK1_uc009xdw.2_Missense_Mutation_p.G384E|MARK1_uc010pun.1_Missense_Mutation_p.G384E|MARK1_uc001hmm.3_Missense_Mutation_p.G362E	NM_018650	NP_061120	Q9P0L2	MARK1_HUMAN	MAP/microtubule affinity-regulating kinase 1	384					intracellular protein kinase cascade	cytoplasm|microtubule cytoskeleton	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(4)|central_nervous_system(2)|skin(2)|stomach(1)|lung(1)	10				GBM - Glioblastoma multiforme(131;0.0407)		TTATCCAGTGGAAACTTGTGT	0.418													4	25					0	0	0.009096	0	0
MARK1	4139	broad.mit.edu	37	1	220824045	220824045	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:220824045G>A	uc001hmn.3	+	14	2151	c.1554G>A	c.(1552-1554)CAG>CAA	p.Q518Q	MARK1_uc009xdw.2_Silent_p.Q518Q|MARK1_uc010pun.1_Silent_p.Q518Q|MARK1_uc001hmm.3_Silent_p.Q496Q	NM_018650	NP_061120	Q9P0L2	MARK1_HUMAN	MAP/microtubule affinity-regulating kinase 1	518					intracellular protein kinase cascade	cytoplasm|microtubule cytoskeleton	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(4)|central_nervous_system(2)|skin(2)|stomach(1)|lung(1)	10				GBM - Glioblastoma multiforme(131;0.0407)		TAGCATTGCAGAATGGAAAAG	0.428													36	72					0	0	0.006999	0	0
MOSC2	54996	broad.mit.edu	37	1	220935159	220935159	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:220935159C>T	uc001hmq.2	+	3	804	c.606C>T	c.(604-606)TTC>TTT	p.F202F	MOSC2_uc001hmr.2_Silent_p.F202F|MOSC2_uc009xdx.2_Silent_p.F202F	NM_017898	NP_060368	Q969Z3	MOSC2_HUMAN	MOCO sulphurase C-terminal domain containing 2	202	MOSC.					mitochondrial outer membrane|peroxisome	molybdenum ion binding|oxidoreductase activity|pyridoxal phosphate binding				0				GBM - Glioblastoma multiforme(131;0.00499)|all cancers(67;0.204)		ATCAGAATTTCCAGGTGAGCT	0.428													16	62					0	0	0.004990	0	0
HHIPL2	79802	broad.mit.edu	37	1	222715384	222715384	+	Missense_Mutation	SNP	G	A	A	rs146335870		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:222715384G>A	uc001hnh.1	-	3	1146	c.1088C>T	c.(1087-1089)CCC>CTC	p.P363L		NM_024746	NP_079022	Q6UWX4	HIPL2_HUMAN	HHIP-like 2 precursor	363					carbohydrate metabolic process	extracellular region	oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor|quinone binding			ovary(1)	1				GBM - Glioblastoma multiforme(131;0.0185)		CAGGCCAAAGGGATCTCCAGC	0.527													139	272					0	0	0.014410	0	0
HHIPL2	79802	broad.mit.edu	37	1	222721128	222721128	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:222721128C>T	uc001hnh.1	-	1	317	c.259G>A	c.(259-261)GAA>AAA	p.E87K		NM_024746	NP_079022	Q6UWX4	HIPL2_HUMAN	HHIP-like 2 precursor	87					carbohydrate metabolic process	extracellular region	oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor|quinone binding			ovary(1)	1				GBM - Glioblastoma multiforme(131;0.0185)		TCAAAATATTCCATGATGTCC	0.522													191	341					0	0	0.014410	0	0
MIA3	375056	broad.mit.edu	37	1	222801984	222801984	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:222801984C>T	uc001hnl.2	+	4	1431	c.1422C>T	c.(1420-1422)TCC>TCT	p.S474S	MIA3_uc009xea.1_Silent_p.S310S	NM_198551	NP_940953	Q5JRA6	MIA3_HUMAN	melanoma inhibitory activity family, member 3	474	Potential.|Extracellular (Potential).				exocytosis|negative regulation of cell adhesion|negative regulation of cell migration|positive regulation of leukocyte migration|protein transport|wound healing	endoplasmic reticulum membrane|integral to membrane	protein binding			ovary(4)|central_nervous_system(1)	5				GBM - Glioblastoma multiforme(131;0.0199)		TTCAGGAATCCAAGAGGGGCC	0.393													83	181					0	0	0.014410	0	0
NVL	4931	broad.mit.edu	37	1	224482072	224482072	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:224482072C>T	uc001hok.2	-	12	1265	c.1222G>A	c.(1222-1224)GGA>AGA	p.G408R	NVL_uc001hol.2_Missense_Mutation_p.G302R|NVL_uc010pvd.1_Missense_Mutation_p.G317R|NVL_uc010pve.1_Missense_Mutation_p.G219R|NVL_uc010pvf.1_RNA	NM_002533	NP_002524	O15381	NVL_HUMAN	nuclear VCP-like isoform 1	408						aggresome|cytoplasm|nucleolus	ATP binding|nucleoside-triphosphatase activity			skin(2)	2				GBM - Glioblastoma multiforme(131;0.00501)		TTAGTAGCTCCAATAACTAGG	0.483													7	47					0	0	0.001984	0	0
ENAH	55740	broad.mit.edu	37	1	225700644	225700644	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:225700644G>A	uc001hpc.1	-	8	1746	c.1293C>T	c.(1291-1293)GGC>GGT	p.G431G	ENAH_uc001hpd.1_Silent_p.G431G|ENAH_uc001hpb.1_Silent_p.G50G	NM_001008493	NP_001008493	Q8N8S7	ENAH_HUMAN	enabled homolog isoform a	431	EVH2.				axon guidance|intracellular transport|T cell receptor signaling pathway	cytosol|filopodium|focal adhesion|lamellipodium|synapse	actin binding|SH3 domain binding|WW domain binding			ovary(1)|skin(1)	2	Breast(184;0.206)			GBM - Glioblastoma multiforme(131;0.19)		CATTTCCACGGCCTGTATCTG	0.453													33	77					0	0	0.003271	0	0
LEFTY1	10637	broad.mit.edu	37	1	226075716	226075716	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:226075716G>A	uc001hpo.2	-	2	337	c.267C>T	c.(265-267)TTC>TTT	p.F89F	LEFTY1_uc010pvj.1_Missense_Mutation_p.P198S|LEFTY1_uc009xej.1_Silent_p.F89F	NM_020997	NP_066277	O75610	LFTY1_HUMAN	left-right determination, factor B	89					cell growth|multicellular organismal development|transforming growth factor beta receptor signaling pathway	extracellular space	cytokine activity|growth factor activity|transforming growth factor beta receptor binding				0	Breast(184;0.197)					CCAACGCCAGGAACCTGCCGG	0.692													7	36					0	0	0.008291	0	0
C1orf55	163859	broad.mit.edu	37	1	226183025	226183025	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:226183025G>A	uc001hpu.3	-	2	233	c.180C>T	c.(178-180)GAC>GAT	p.D60D	C1orf55_uc001hpv.2_Silent_p.D60D	NM_152608	NP_689821	Q6IQ49	CA055_HUMAN	hypothetical protein LOC163859	60										lung(1)	1	Breast(184;0.197)					GCTGCACTGTGTCACTGGTGT	0.388													9	53					0	0	0.006214	0	0
Unknown	0	broad.mit.edu	37	1	227618340	227618340	+	RNA	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:227618340G>A	uc001hqv.2	+	4		c.1575G>A								Homo sapiens cDNA clone IMAGE:5270051.																		GCTGTGGGTCGAAGATATGCT	0.502													4	23					0	0	0.000602	0	0
OBSCN	84033	broad.mit.edu	37	1	228433155	228433155	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:228433155G>A	uc009xez.1	+	12	3567	c.3523G>A	c.(3523-3525)GAG>AAG	p.E1175K	OBSCN_uc001hsn.2_Missense_Mutation_p.E1175K	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	1175	Ig-like 12.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				AGTGCATAATGAGGTGCAGGC	0.587													8	51					0	0	0.003080	0	0
OBSCN	84033	broad.mit.edu	37	1	228509610	228509610	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:228509610C>T	uc009xez.1	+	55	15112	c.15068C>T	c.(15067-15069)CCG>CTG	p.P5023L	OBSCN_uc001hsn.2_Missense_Mutation_p.P5023L	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	5023					apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				ACCAAAAGTCCGGCTGAAGTT	0.637													21	33					0	0	0.008871	0	0
OBSCN	84033	broad.mit.edu	37	1	228529196	228529196	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:228529196G>A	uc009xez.1	+	74	17959	c.17915G>A	c.(17914-17916)TGG>TAG	p.W5972*	OBSCN_uc001hsn.2_Nonsense_Mutation_p.W5972*|OBSCN_uc001hsr.1_Nonsense_Mutation_p.W601*	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	5972	PH.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				TTCGAGGTGTGGCAGGAGCGG	0.642													15	24					0	0	0.003163	0	0
RHOU	58480	broad.mit.edu	37	1	228879409	228879409	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:228879409G>A	uc001htf.2	+	3	1320	c.699G>A	c.(697-699)AAG>AAA	p.K233K		NM_021205	NP_067028	Q7L0Q8	RHOU_HUMAN	ras homolog gene family, member U	233					regulation of small GTPase mediated signal transduction	cell projection|cytosol|focal adhesion|Golgi membrane|podosome	GTP binding|metal ion binding|protein binding				0	Breast(184;0.162)	Prostate(94;0.183)				AACAGCCAAAGAAGTCTAAAA	0.458													47	74					0	0	0.014410	0	0
COG2	22796	broad.mit.edu	37	1	230807342	230807342	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:230807342C>T	uc001htw.2	+	8	1006	c.855C>T	c.(853-855)CAC>CAT	p.H285H	COG2_uc001htx.2_Silent_p.H285H|COG2_uc010pwc.1_Silent_p.H158H	NM_007357	NP_031383	Q14746	COG2_HUMAN	component of oligomeric golgi complex 2 isoform	285					Golgi organization|intra-Golgi vesicle-mediated transport|intracellular protein transport|oligosaccharide biosynthetic process|protein glycosylation	Golgi membrane|Golgi stack|Golgi transport complex	protein binding|protein transporter activity				0	Breast(184;0.0871)|Ovarian(103;0.183)	Prostate(94;0.178)				TTGTTCCTCACCATTGCCGCC	0.453													34	65					0	0	0.003271	0	0
KCNK1	3775	broad.mit.edu	37	1	233807017	233807017	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:233807017G>A	uc010pxo.1	+	3	920	c.752G>A	c.(751-753)TGT>TAT	p.C251Y	KCNK1_uc001hvw.2_RNA|KCNK1_uc001hvx.2_RNA	NM_002245	NP_002236	O00180	KCNK1_HUMAN	potassium channel, subfamily K, member 1	251	Helical; (Potential).					voltage-gated potassium channel complex	inward rectifier potassium channel activity			central_nervous_system(1)	1		all_cancers(173;0.00217)|all_epithelial(177;0.121)|Prostate(94;0.122)|Acute lymphoblastic leukemia(190;0.175)			Ibutilide(DB00308)|Quinidine(DB00908)	TCTCACACAGGTTACCTGCTA	0.418													40	79					0	0	0.014410	0	0
SLC35F3	148641	broad.mit.edu	37	1	234445036	234445036	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:234445036C>T	uc001hwa.1	+	3	819	c.591C>T	c.(589-591)ATC>ATT	p.I197I	SLC35F3_uc001hvy.1_Silent_p.I266I	NM_173508	NP_775779	Q8IY50	S35F3_HUMAN	solute carrier family 35, member F3	197	Helical; (Potential).				transport	integral to membrane				ovary(2)	2	Ovarian(103;0.0454)	all_cancers(173;0.145)|Prostate(94;0.0885)	OV - Ovarian serous cystadenocarcinoma(106;0.00531)			TCTCATGGATCGTTCTCAGGG	0.443													16	37					0	0	0.006122	0	0
LYST	1130	broad.mit.edu	37	1	235972605	235972605	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:235972605C>T	uc001hxj.2	-	5	1688	c.1513G>A	c.(1513-1515)GAA>AAA	p.E505K	LYST_uc009xgb.1_RNA|LYST_uc010pxs.1_RNA|LYST_uc001hxl.1_Missense_Mutation_p.E505K	NM_000081	NP_000072	Q99698	LYST_HUMAN	lysosomal trafficking regulator	505					defense response to bacterium|defense response to protozoan|defense response to virus|endosome to lysosome transport via multivesicular body sorting pathway|leukocyte chemotaxis|mast cell secretory granule organization|melanosome organization|natural killer cell mediated cytotoxicity|protein transport	cytoplasm|microtubule cytoskeleton	protein binding			ovary(6)|breast(4)|central_nervous_system(2)	12	Ovarian(103;0.0634)|Breast(184;0.23)	all_cancers(173;0.00246)|Prostate(94;0.0771)|Acute lymphoblastic leukemia(190;0.228)	OV - Ovarian serous cystadenocarcinoma(106;0.000674)			TGAGAATATTCACATCGTCTG	0.373									Chediak-Higashi_syndrome				22	55					0	0	0.003330	0	0
ACTN2	88	broad.mit.edu	37	1	236918447	236918447	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:236918447C>T	uc001hyf.2	+	17	2307	c.2103C>T	c.(2101-2103)CTC>CTT	p.L701L	ACTN2_uc001hyg.2_Silent_p.L493L|ACTN2_uc009xgi.1_Silent_p.L701L|ACTN2_uc010pxu.1_Silent_p.L390L|ACTN2_uc001hyh.2_Silent_p.L389L	NM_001103	NP_001094	P35609	ACTN2_HUMAN	actinin, alpha 2	701	Spectrin 4.				focal adhesion assembly|microspike assembly|muscle filament sliding|platelet activation|platelet degranulation|protein homotetramerization|regulation of apoptosis|synaptic transmission	actin filament|cytosol|dendritic spine|extracellular region|filopodium|focal adhesion|nucleolus|platelet alpha granule lumen|pseudopodium|Z disc	actin binding|calcium ion binding|FATZ 1 binding|identical protein binding|integrin binding|protein dimerization activity|structural constituent of muscle|titin binding|titin Z domain binding|ZASP binding			ovary(4)|skin(1)	5	Ovarian(103;0.0634)|Breast(184;0.221)	all_cancers(173;0.00661)|Acute lymphoblastic leukemia(190;0.109)|Prostate(94;0.174)	OV - Ovarian serous cystadenocarcinoma(106;0.00168)			ACCATCAGCTCATCCAGGAGG	0.537													51	98					0	0	0.014410	0	0
RYR2	6262	broad.mit.edu	37	1	237494187	237494187	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:237494187C>T	uc001hyl.1	+	3	298	c.178C>T	c.(178-180)CCA>TCA	p.P60S		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	60	Cytoplasmic (By similarity).				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			GAATGTGCCCCCAGACCTCTC	0.542													13	46					0	0	0.002450	0	0
RYR2	6262	broad.mit.edu	37	1	237660052	237660052	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:237660052G>A	uc001hyl.1	+	20	2323	c.2203G>A	c.(2203-2205)GGT>AGT	p.G735S		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	735	Cytoplasmic (By similarity).|B30.2/SPRY 1.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			TCTCTGGTCAGGTACGTACTA	0.468													29	150					0	0	0.009535	0	0
RYR2	6262	broad.mit.edu	37	1	237791306	237791306	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:237791306C>T	uc001hyl.1	+	41	6486	c.6366C>T	c.(6364-6366)TCC>TCT	p.S2122S		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	2122	Cytoplasmic (By similarity).|4 X approximate repeats.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			TGCTGGCATCCCTTGGTCAGA	0.498													22	28					0	0	0.003330	0	0
RYR2	6262	broad.mit.edu	37	1	237796931	237796931	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:237796931C>T	uc001hyl.1	+	43	6729	c.6609C>T	c.(6607-6609)TTC>TTT	p.F2203F		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	2203	Cytoplasmic (By similarity).|4 X approximate repeats.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			TCTGTTACTTCTGTCGTATAA	0.378													54	121					0	0	0.014410	0	0
RYR2	6262	broad.mit.edu	37	1	237843767	237843767	+	Silent	SNP	T	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:237843767T>A	uc001hyl.1	+	62	9027	c.8907T>A	c.(8905-8907)CCT>CCA	p.P2969P	RYR2_uc010pxz.1_5'UTR	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	2969	Modulator (Potential).|Cytoplasmic (By similarity).				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			TCGTTCTTCCTTTAATTGATC	0.423													12	18					0	0	0.013537	0	0
RYR2	6262	broad.mit.edu	37	1	237875071	237875071	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:237875071C>T	uc001hyl.1	+	71	10377	c.10257C>T	c.(10255-10257)TTC>TTT	p.F3419F	RYR2_uc010pxz.1_Silent_p.F374F	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	3419					cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			AGCAGAACTTCGTTGTACAGA	0.323													6	20					0	0	0.003080	0	0
ZP4	57829	broad.mit.edu	37	1	238048545	238048545	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:238048545G>A	uc001hym.2	-	9	1231	c.1231C>T	c.(1231-1233)CCC>TCC	p.P411S	LOC100130331_uc010pyc.1_Intron	NM_021186	NP_067009	Q12836	ZP4_HUMAN	zona pellucida glycoprotein 4 preproprotein	411	ZP.|Extracellular (Potential).				acrosomal vesicle exocytosis|negative regulation of binding of sperm to zona pellucida|positive regulation of acrosome reaction|positive regulation of humoral immune response|positive regulation of protein kinase activity|positive regulation of T cell proliferation|protein kinase A signaling cascade|protein kinase C signaling cascade	integral to membrane|intracellular|plasma membrane|proteinaceous extracellular matrix	acrosin binding|receptor activity			ovary(2)|skin(1)	3	Ovarian(103;0.103)	all_cancers(173;0.00175)|all_epithelial(177;0.162)|all_neural(198;0.164)|Melanoma(53;0.211)|Prostate(94;0.214)	OV - Ovarian serous cystadenocarcinoma(106;0.00989)			TGGTGAGAGGGAAATGGAAGA	0.542													16	44					0	0	0.003163	0	0
FMN2	56776	broad.mit.edu	37	1	240370204	240370204	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:240370204C>T	uc010pyd.1	+	5	2317	c.2092C>T	c.(2092-2094)CCT>TCT	p.P698S	FMN2_uc010pye.1_Missense_Mutation_p.P702S	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	698	Potential.				actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			GAGGCAGTATCCTGCCCTGGA	0.498													9	44					0	0	0.008291	0	0
FMN2	56776	broad.mit.edu	37	1	240601449	240601449	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:240601449G>A	uc010pyd.1	+	16	5224	c.4999G>A	c.(4999-5001)GAA>AAA	p.E1667K	FMN2_uc010pye.1_Missense_Mutation_p.E1671K|FMN2_uc010pyg.1_Missense_Mutation_p.E263K	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	1667	FH2.				actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			TATCTGGCATGAATTCAGCTC	0.388													21	53					0	0	0.010504	0	0
RGS7	6000	broad.mit.edu	37	1	240939511	240939511	+	Silent	SNP	C	T	T	rs114705999	by1000genomes	TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:240939511C>T	uc001hyv.2	-	18	1746	c.1416G>A	c.(1414-1416)GGG>GGA	p.G472G	RGS7_uc010pyh.1_Intron|RGS7_uc010pyj.1_3'UTR|RGS7_uc001hyu.2_3'UTR|RGS7_uc009xgn.1_3'UTR|RGS7_uc001hyw.2_Silent_p.G454G|RGS7_uc010pyi.1_RNA|RGS7_uc001hyt.2_3'UTR	NM_002924	NP_002915	P49802	RGS7_HUMAN	regulator of G-protein signaling 7	472					G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|protein binding|signal transducer activity	p.G472G(1)		ovary(4)|skin(2)|kidney(1)	7		all_cancers(173;0.0131)	OV - Ovarian serous cystadenocarcinoma(106;0.027)			TGAGAGATTTCCCCTGAGAAA	0.383													5	51					0	0	0.000602	0	0
RGS7	6000	broad.mit.edu	37	1	241519024	241519024	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:241519024G>A	uc001hyv.2	-	2	383	c.53C>T	c.(52-54)TCA>TTA	p.S18L	RGS7_uc001hyu.2_Missense_Mutation_p.S18L|RGS7_uc009xgn.1_Missense_Mutation_p.S18L|RGS7_uc001hyw.2_Missense_Mutation_p.S18L	NM_002924	NP_002915	P49802	RGS7_HUMAN	regulator of G-protein signaling 7	18					G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|protein binding|signal transducer activity			ovary(4)|skin(2)|kidney(1)	7		all_cancers(173;0.0131)	OV - Ovarian serous cystadenocarcinoma(106;0.027)			CATGTTGGGTGATTCATCGGC	0.468													32	55					0	0	0.013726	0	0
KMO	8564	broad.mit.edu	37	1	241714307	241714307	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:241714307G>A	uc009xgp.2	+	4	340	c.275G>A	c.(274-276)GGA>GAA	p.G92E	KMO_uc001hyy.2_Missense_Mutation_p.G92E|KMO_uc009xgo.1_Missense_Mutation_p.G92E	NM_003679	NP_003670	O15229	KMO_HUMAN	kynurenine 3-monooxygenase	92					pyridine nucleotide biosynthetic process|response to salt stress	cytosol|integral to membrane|mitochondrial outer membrane	electron carrier activity|flavin adenine dinucleotide binding|kynurenine 3-monooxygenase activity|NAD(P)H oxidase activity			ovary(2)	2	Ovarian(103;0.103)|all_lung(81;0.23)		OV - Ovarian serous cystadenocarcinoma(106;0.0176)			TCTCTTTCAGGAAAAAAGTCT	0.403													25	130					0	0	0.007291	0	0
VN1R5	317705	broad.mit.edu	37	1	247419998	247419998	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:247419998G>A	uc010pyu.1	+	2	625	c.625G>A	c.(625-627)GAG>AAG	p.E209K		NM_173858	NP_776257	Q7Z5H4	VN1R5_HUMAN	vomeronasal 1 receptor 5	209	Cytoplasmic (Potential).				response to pheromone	integral to membrane|plasma membrane	pheromone receptor activity				0	all_cancers(71;5.7e-05)|all_epithelial(71;1.03e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0607)|Lung NSC(105;0.0661)	all_cancers(173;0.0314)	OV - Ovarian serous cystadenocarcinoma(106;0.00854)			TTTTGCCCATGAGCTACACCC	0.463													63	183					0	0	0.014410	0	0
OR2B11	127623	broad.mit.edu	37	1	247614805	247614805	+	Silent	SNP	G	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:247614805G>T	uc010pyx.1	-	1	480	c.480C>A	c.(478-480)TCC>TCA	p.S160S		NM_001004492	NP_001004492	Q5JQS5	OR2BB_HUMAN	olfactory receptor, family 2, subfamily B,	160	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			upper_aerodigestive_tract(1)	1	all_cancers(71;4.51e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.241)	OV - Ovarian serous cystadenocarcinoma(106;0.0188)			CCTGCACGAAGGAGTTGCCGA	0.602													9	25					3.09899e-07	3.32468e-07	0.004482	1	0
OR2C3	81472	broad.mit.edu	37	1	247695031	247695031	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:247695031G>A	uc009xgy.2	-	2	1145	c.783C>T	c.(781-783)CTC>CTT	p.L261L	C1orf150_uc009xgw.2_Intron|C1orf150_uc001ida.3_Intron|C1orf150_uc001idb.3_Intron|C1orf150_uc009xgx.2_Intron|LOC148824_uc001idd.2_5'Flank	NM_198074	NP_932340	Q8N628	OR2C3_HUMAN	olfactory receptor, family 2, subfamily C,	261	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;4.51e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0242)	OV - Ovarian serous cystadenocarcinoma(106;0.0241)			TGGCTGGCTGGAGATACATGA	0.522													26	53					0	0	0.003954	0	0
C1orf150	148823	broad.mit.edu	37	1	247712513	247712513	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:247712513G>A	uc001idf.2	+	1	65	c.20G>A	c.(19-21)CGA>CAA	p.R7Q	C1orf150_uc009xgw.2_Intron|C1orf150_uc001ida.3_RNA|C1orf150_uc001idb.3_RNA|C1orf150_uc009xgx.2_Intron	NM_145278	NP_660321	Q5JQS6	CA150_HUMAN	hypothetical protein LOC148823	7											0	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.0241)			TATCTCCTGCGAAAACTCAGG	0.463													16	41					0	0	0.004007	0	0
OR2G3	81469	broad.mit.edu	37	1	247769241	247769241	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:247769241G>A	uc010pyz.1	+	1	354	c.354G>A	c.(352-354)ATG>ATA	p.M118I		NM_001001914	NP_001001914	Q8NGZ4	OR2G3_HUMAN	olfactory receptor, family 2, subfamily G,	118	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			TGGCTGACATGGCCTTGGATC	0.507													27	169					0	0	0.005443	0	0
OR6F1	343169	broad.mit.edu	37	1	247875181	247875181	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:247875181G>A	uc001idj.1	-	1	877	c.877C>T	c.(877-879)CGT>TGT	p.R293C		NM_001005286	NP_001005286	Q8NGZ6	OR6F1_HUMAN	olfactory receptor, family 6, subfamily F,	293	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.0168)			TCCTTATTACGAAGCGTATAG	0.438													10	85					0	0	0.001855	0	0
OR1C1	26188	broad.mit.edu	37	1	247920823	247920823	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:247920823C>T	uc010pza.1	-	1	886	c.886G>A	c.(886-888)GAT>AAT	p.D296N		NM_012353	NP_036485	Q15619	OR1C1_HUMAN	olfactory receptor, family 1, subfamily C,	296	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;4.34e-05)|all_epithelial(71;1.13e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0786)|Lung NSC(105;0.0858)	all_cancers(173;0.0247)	OV - Ovarian serous cystadenocarcinoma(106;0.0168)			CTCTTCATATCCCTGTTCCTT	0.428													52	76					0	0	0.014410	0	0
OR11L1	391189	broad.mit.edu	37	1	248004859	248004859	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:248004859G>A	uc001idn.1	-	1	340	c.340C>T	c.(340-342)CTC>TTC	p.L114F		NM_001001959	NP_001001959	Q8NGX0	O11L1_HUMAN	olfactory receptor, family 11, subfamily L,	114	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3	all_cancers(71;8.78e-05)|all_epithelial(71;9.15e-06)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.0786)|Lung NSC(105;0.0858)		OV - Ovarian serous cystadenocarcinoma(106;0.0319)			AAGGCCAGGAGAAAGCACTCG	0.597													4	12					0	0	0.001168	0	0
OR2W3	343171	broad.mit.edu	37	1	248058927	248058927	+	Silent	SNP	C	T	T	rs118132111	by1000genomes	TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:248058927C>T	uc001idp.1	+	3	308	c.39C>T	c.(37-39)ATC>ATT	p.I13I	OR2W3_uc010pzb.1_Silent_p.I13I	NM_001001957	NP_001001957	Q7Z3T1	OR2W3_HUMAN	olfactory receptor, family 2, subfamily W,	13	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)|pancreas(1)	3	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0319)			CCCATTTCATCCTACTGGGAT	0.438													6	37					0	0	0.001168	0	0
OR2T8	343172	broad.mit.edu	37	1	248084830	248084830	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:248084830G>A	uc010pzc.1	+	1	511	c.511G>A	c.(511-513)GAG>AAG	p.E171K		NM_001005522	NP_001005522	A6NH00	OR2T8_HUMAN	olfactory receptor, family 2, subfamily T,	171	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)	all_cancers(173;0.0211)	OV - Ovarian serous cystadenocarcinoma(106;0.0319)			CGGTGCACACGAGATCGATCA	0.557													4	27					0	0	0.004482	0	0
OR2L8	391190	broad.mit.edu	37	1	248112537	248112537	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:248112537C>T	uc001idt.1	+	1	378	c.378C>T	c.(376-378)TGC>TGT	p.C126C	OR2L13_uc001ids.2_Intron	NM_001001963	NP_001001963	Q8NGY9	OR2L8_HUMAN	olfactory receptor, family 2, subfamily L,	126	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0152)			TTGCTATTTGCTTTCCTCTCC	0.458													47	139					0	0	0.014410	0	0
OR2AK2	391191	broad.mit.edu	37	1	248129370	248129370	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:248129370G>A	uc010pzd.1	+	1	737	c.737G>A	c.(736-738)GGA>GAA	p.G246E	OR2L13_uc001ids.2_Intron	NM_001004491	NP_001004491	Q8NG84	O2AK2_HUMAN	olfactory receptor, family 2, subfamily AK,	246	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0152)			ATGAGCTCAGGAAAAGGACAG	0.478													16	29					0	0	0.004990	0	0
OR2L1P	26247	broad.mit.edu	37	1	248153859	248153859	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:248153859G>A	uc001idv.1	+	1	291	c.47G>A	c.(46-48)GGG>GAG	p.G16E	OR2L13_uc001ids.2_Intron	NR_002145				RecName: Full=Olfactory receptor 2L5; AltName: Full=Olfactory receptor OR1-53;												0						ACTGGGTGTGGGATTCAGAGT	0.428													30	49					0	0	0.006320	0	0
OR2M1P	388762	broad.mit.edu	37	1	248285833	248285833	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:248285833C>T	uc001idy.1	+	1	396	c.396C>T	c.(394-396)TTC>TTT	p.F132F		NR_002141				RecName: Full=Olfactory receptor 2M5;												0						AGGTTATTTTCATTTGCTCTA	0.423													43	107					0	0	0.006999	0	0
OR2M5	127059	broad.mit.edu	37	1	248308994	248308994	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:248308994C>T	uc010pze.1	+	1	545	c.545C>T	c.(544-546)CCT>CTT	p.P182L		NM_001004690	NP_001004690	A3KFT3	OR2M5_HUMAN	olfactory receptor, family 2, subfamily M,	182	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|kidney(1)	3	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0388)			TGTGACTTCCCTTCCCTACTA	0.418													63	152					0	0	0.014410	0	0
OR2M2	391194	broad.mit.edu	37	1	248343415	248343415	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:248343415C>T	uc010pzf.1	+	1	128	c.128C>T	c.(127-129)TCT>TTT	p.S43F		NM_001004688	NP_001004688	Q96R28	OR2M2_HUMAN	olfactory receptor, family 2, subfamily M,	43	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|skin(1)	4	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			ATGGGAAACTCTGTCATGGTT	0.527													91	166					0	0	0.014410	0	0
OR2M4	26245	broad.mit.edu	37	1	248402372	248402372	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:248402372C>T	uc010pzh.1	+	1	142	c.142C>T	c.(142-144)CTC>TTC	p.L48F		NM_017504	NP_059974	Q96R27	OR2M4_HUMAN	olfactory receptor, family 2, subfamily M,	48	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(2)	2	all_cancers(71;0.000124)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			CATGGTTCTCCTCATCTACAT	0.483													37	69					0	0	0.006999	0	0
OR2M4	26245	broad.mit.edu	37	1	248403085	248403085	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:248403085G>A	uc010pzh.1	+	1	855	c.855G>A	c.(853-855)CTG>CTA	p.L285L		NM_017504	NP_059974	Q96R27	OR2M4_HUMAN	olfactory receptor, family 2, subfamily M,	285	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(2)	2	all_cancers(71;0.000124)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			CCCCTATGCTGAACCCTCTCA	0.433													21	30					0	0	0.014323	0	0
OR2M7	391196	broad.mit.edu	37	1	248487463	248487463	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:248487463C>T	uc010pzk.1	-	1	408	c.408G>A	c.(406-408)ATG>ATA	p.M136I		NM_001004691	NP_001004691	Q8NG81	OR2M7_HUMAN	olfactory receptor, family 2, subfamily M,	136	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			TTTTGGGTCTCATGAGATTGG	0.448													43	160					0	0	0.014410	0	0
OR14C36	127066	broad.mit.edu	37	1	248512081	248512081	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:248512081C>T	uc010pzl.1	+	1	5	c.5C>T	c.(4-6)CCC>CTC	p.P2L		NM_001001918	NP_001001918	Q8NHC7	O14CZ_HUMAN	olfactory receptor, family 14, subfamily C,	2	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3						CCACCGATGCCCAATTCAACC	0.403													8	37					0	0	0.008291	0	0
OR2T4	127074	broad.mit.edu	37	1	248524930	248524930	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:248524930C>T	uc001ieh.1	+	1	48	c.48C>T	c.(46-48)TTC>TTT	p.F16F		NM_001004696	NP_001004696	Q8NH00	OR2T4_HUMAN	olfactory receptor, family 2, subfamily T,	16	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			GGTCGGATTTCATCCTGATGG	0.493													19	40					0	0	0.010504	0	0
OR2T6	254879	broad.mit.edu	37	1	248551306	248551306	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:248551306C>T	uc001iei.1	+	1	397	c.397C>T	c.(397-399)CCT>TCT	p.P133S		NM_001005471	NP_001005471	Q8NHC8	OR2T6_HUMAN	olfactory receptor, family 2, subfamily T,	133	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			ACTGCGCTATCCTGTCCTCAT	0.562													17	50					0	0	0.004007	0	0
OR2T6	254879	broad.mit.edu	37	1	248551788	248551788	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:248551788G>A	uc001iei.1	+	1	879	c.879G>A	c.(877-879)AGG>AGA	p.R293R		NM_001005471	NP_001005471	Q8NHC8	OR2T6_HUMAN	olfactory receptor, family 2, subfamily T,	293	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			ACAGTCTGAGGAACAGGGATG	0.458													16	38					0	0	0.008871	0	0
OR2T1	26696	broad.mit.edu	37	1	248569979	248569979	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:248569979C>T	uc010pzm.1	+	1	684	c.684C>T	c.(682-684)TTC>TTT	p.F228F		NM_030904	NP_112166	O43869	OR2T1_HUMAN	olfactory receptor, family 2, subfamily T,	228	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			ACCACTTCTTCTGTGAGGCAC	0.512													13	44					0	0	0.002450	0	0
OR2T2	401992	broad.mit.edu	37	1	248616205	248616205	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:248616205T>C	uc001iek.1	+	1	107	c.107T>C	c.(106-108)TTT>TCT	p.F36S		NM_001004136	NP_001004136	Q6IF00	OR2T2_HUMAN	olfactory receptor, family 2, subfamily T,	36	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			TTCTCCATCTTTGTGGTGGCT	0.527													38	167					0	0	0.010771	0	0
OR2T2	401992	broad.mit.edu	37	1	248616379	248616379	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:248616379C>T	uc001iek.1	+	1	281	c.281C>T	c.(280-282)TCC>TTC	p.S94F		NM_001004136	NP_001004136	Q6IF00	OR2T2_HUMAN	olfactory receptor, family 2, subfamily T,	94	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			AAGACCATTTCCTTCCTGGGC	0.522													36	191					0	0	0.007835	0	0
OR2T2	401992	broad.mit.edu	37	1	248616751	248616751	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:248616751C>T	uc001iek.1	+	1	653	c.653C>T	c.(652-654)TCC>TTC	p.S218F		NM_001004136	NP_001004136	Q6IF00	OR2T2_HUMAN	olfactory receptor, family 2, subfamily T,	218	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			ATCTCTGTCTCCTACACGCAC	0.532													19	44					0	0	0.008871	0	0
OR2T3	343173	broad.mit.edu	37	1	248637008	248637008	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:248637008C>T	uc001iel.1	+	1	357	c.357C>T	c.(355-357)CTC>CTT	p.L119L		NM_001005495	NP_001005495	Q8NH03	OR2T3_HUMAN	olfactory receptor, family 2, subfamily T,	119	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			AGGTTTTCCTCCTGGCTGCCA	0.562													6	20					0	0	0.002450	0	0
OR2G6	391211	broad.mit.edu	37	1	248685266	248685266	+	Silent	SNP	T	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:248685266T>C	uc001ien.1	+	1	319	c.319T>C	c.(319-321)TTG>CTG	p.L107L		NM_001013355	NP_001013373	Q5TZ20	OR2G6_HUMAN	olfactory receptor, family 2, subfamily G,	107	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)	all_cancers(173;0.0156)	OV - Ovarian serous cystadenocarcinoma(106;0.0265)			GGCCATGGGGTTGGGCTCGTC	0.542													29	83					0	0	0.003271	0	0
OR2T34	127068	broad.mit.edu	37	1	248737590	248737590	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:248737590C>T	uc001iep.1	-	1	469	c.469G>A	c.(469-471)GGA>AGA	p.G157R		NM_001001821	NP_001001821	Q8NGX1	O2T34_HUMAN	olfactory receptor, family 2, subfamily T,	157	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)	2	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			TCAACCATTCCCAAAACCCAG	0.522													10	26					0	0	0.006122	0	0
OR2T34	127068	broad.mit.edu	37	1	248737702	248737702	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:248737702G>A	uc001iep.1	-	1	357	c.357C>T	c.(355-357)CTC>CTT	p.L119L		NM_001001821	NP_001001821	Q8NGX1	O2T34_HUMAN	olfactory receptor, family 2, subfamily T,	119	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)	2	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			TGGCAGCCAGGAGGAAAACCT	0.567													18	52					0	0	0.006320	0	0
OR2T34	127068	broad.mit.edu	37	1	248737705	248737705	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:248737705G>A	uc001iep.1	-	1	354	c.354C>T	c.(352-354)TTC>TTT	p.F118F		NM_001001821	NP_001001821	Q8NGX1	O2T34_HUMAN	olfactory receptor, family 2, subfamily T,	118	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)	2	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			CAGCCAGGAGGAAAACCTCAG	0.562													6	65					0	0	0.001984	0	0
OR2T10	127069	broad.mit.edu	37	1	248756344	248756344	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:248756344G>A	uc010pzn.1	-	1	726	c.726C>T	c.(724-726)TCC>TCT	p.S242S		NM_001004693	NP_001004693	Q8NGZ9	O2T10_HUMAN	olfactory receptor, family 2, subfamily T,	242	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			TAATGTGGGAGGAGCAGGTGG	0.463													5	22					0	0	0.001168	0	0
OR2T11	127077	broad.mit.edu	37	1	248790397	248790397	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:248790397G>A	uc001ier.1	-	1	33	c.33C>T	c.(31-33)CTC>CTT	p.L11L		NM_001001964	NP_001001964	Q8NH01	O2T11_HUMAN	olfactory receptor, family 2, subfamily T,	11	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			lung(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			GAAGCCCCAGGAGGGTGAAGT	0.522													18	29					0	0	0.008871	0	0
ADARB2	105	broad.mit.edu	37	10	1279754	1279754	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:1279754G>A	uc009xhq.2	-	6	1769	c.1395C>T	c.(1393-1395)TTC>TTT	p.F465F		NM_018702	NP_061172	Q9NS39	RED2_HUMAN	adenosine deaminase, RNA-specific, B2	465	A to I editase.				mRNA processing	mitochondrion|nucleus	adenosine deaminase activity|double-stranded RNA binding|metal ion binding|single-stranded RNA binding			large_intestine(2)|central_nervous_system(1)	3		all_epithelial(10;0.059)|Colorectal(49;0.0815)		all cancers(11;0.0224)|GBM - Glioblastoma multiforme(2;0.0414)|Epithelial(11;0.165)		TTAACCGCACGAATATCGATC	0.527													12	22					0	0	0.013537	0	0
CALML5	51806	broad.mit.edu	37	10	5541241	5541241	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:5541241G>A	uc001iic.2	-	1	293	c.161C>T	c.(160-162)TCC>TTC	p.S54F		NM_017422	NP_059118	Q9NZT1	CALL5_HUMAN	calmodulin-like 5	54	EF-hand 2.				epidermis development|signal transduction		calcium ion binding|protein binding				0						GTCAACCTCGGAGATGAGTTT	0.647													11	41					0	0	0.010729	0	0
CALML3	810	broad.mit.edu	37	10	5567256	5567256	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:5567256C>T	uc001iie.1	+	1	333	c.208C>T	c.(208-210)CTG>TTG	p.L70L	uc001iid.1_5'Flank	NM_005185	NP_005176	P27482	CALL3_HUMAN	calmodulin-like 3	70	EF-hand 2.						calcium ion binding				0						CCCCGAGTTCCTGGGCATGAT	0.647													8	9					0	0	0.004482	0	0
ASB13	79754	broad.mit.edu	37	10	5690985	5690986	+	Missense_Mutation	DNP	GT	AA	AA			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:5690985_5690986GT>AA	uc001iig.2	-	4	508_509	c.464_465AC>TT	c.(463-465)CAC>CTT	p.H155L	ASB13_uc001iii.2_RNA|ASB13_uc001iih.2_RNA|ASB13_uc009xic.2_Missense_Mutation_p.H155L	NM_024701	NP_078977	Q8WXK3	ASB13_HUMAN	ankyrin repeat and SOCS box-containing protein	155	ANK 5.				intracellular signal transduction		protein binding			ovary(1)	1				GBM - Glioblastoma multiforme(2;9.59e-09)		CACAGGCAACGTGCAGAGGGGT	0.54													15	50					0	0	0.004672	0	0
PRKCQ	5588	broad.mit.edu	37	10	6540414	6540414	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:6540414G>A	uc001ijj.1	-	5	561	c.486C>T	c.(484-486)TTC>TTT	p.F162F	PRKCQ_uc009xim.1_Silent_p.F162F|PRKCQ_uc001iji.1_Silent_p.F195F|PRKCQ_uc009xin.1_Silent_p.F126F|PRKCQ_uc010qax.1_Silent_p.F37F	NM_006257	NP_006248	Q04759	KPCT_HUMAN	protein kinase C, theta	162	Phorbol-ester/DAG-type 1.				axon guidance|cellular component disassembly involved in apoptosis|intracellular signal transduction|membrane protein ectodomain proteolysis|platelet activation|regulation of cell growth|T cell receptor signaling pathway	cytosol	ATP binding|metal ion binding|protein binding|protein kinase C activity			ovary(3)|lung(2)|large_intestine(1)	6						AGGTGGCAGTGAACTCGTGGC	0.522													14	58					0	0	0.004990	0	0
SFMBT2	57713	broad.mit.edu	37	10	7214518	7214518	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:7214518G>A	uc009xio.1	-	18	2181	c.2090C>T	c.(2089-2091)TCC>TTC	p.S697F	SFMBT2_uc001ijn.1_Missense_Mutation_p.S697F|SFMBT2_uc010qay.1_Missense_Mutation_p.S532F	NM_001029880	NP_001025051	Q5VUG0	SMBT2_HUMAN	Scm-like with four mbt domains 2	697					regulation of transcription, DNA-dependent	nucleus				ovary(4)|upper_aerodigestive_tract(2)|large_intestine(1)|central_nervous_system(1)	8						CACGAAAATGGATTTCCGTCG	0.602													9	25					0	0	0.004482	0	0
ITIH5	80760	broad.mit.edu	37	10	7679266	7679266	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:7679266C>T	uc001ijq.2	-	5	656	c.577G>A	c.(577-579)GAG>AAG	p.E193K	ITIH5_uc001ijr.1_Missense_Mutation_p.E193K	NM_030569	NP_085046	Q86UX2	ITIH5_HUMAN	inter-alpha trypsin inhibitor heavy chain	193					hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(2)	4						CCCGCGCTCTCCAGGATATTC	0.662													9	50					0	0	0.004482	0	0
ITIH5	80760	broad.mit.edu	37	10	7679298	7679298	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:7679298G>A	uc001ijq.2	-	5	624	c.545C>T	c.(544-546)TCC>TTC	p.S182F	ITIH5_uc001ijr.1_Missense_Mutation_p.S182F	NM_030569	NP_085046	Q86UX2	ITIH5_HUMAN	inter-alpha trypsin inhibitor heavy chain	182					hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(2)	4						CAGCCTCCCGGACAGCTGCTG	0.632													9	31					0	0	0.006214	0	0
USP6NL	9712	broad.mit.edu	37	10	11505080	11505080	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:11505080G>A	uc001ikt.3	-	15	2168	c.1847C>T	c.(1846-1848)CCG>CTG	p.P616L	USP6NL_uc001iks.1_Missense_Mutation_p.P633L	NM_014688	NP_055503	Q92738	US6NL_HUMAN	USP6 N-terminal like isoform 1	616						intracellular	Rab GTPase activator activity				0						TAGCTGGGACGGATATCGTGC	0.527													6	24					0	0	0.001984	0	0
CAMK1D	57118	broad.mit.edu	37	10	12803023	12803023	+	Missense_Mutation	SNP	C	T	T	rs143417427	byFrequency	TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:12803023C>T	uc001ilo.2	+	4	611	c.376C>T	c.(376-378)CGC>TGC	p.R126C	CAMK1D_uc001iln.2_Missense_Mutation_p.R126C	NM_153498	NP_705718	Q8IU85	KCC1D_HUMAN	calcium/calmodulin-dependent protein kinase ID	126	Protein kinase.					calcium- and calmodulin-dependent protein kinase complex|cytoplasm|nucleus	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			ovary(1)|stomach(1)	2				GBM - Glioblastoma multiforme(1;3.16e-05)		CACTCTGATCCGCCAAGTCTT	0.527													38	118					0	0	0.011902	0	0
FAM171A1	221061	broad.mit.edu	37	10	15255590	15255590	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:15255590G>A	uc001iob.2	-	8	2004	c.1997C>T	c.(1996-1998)TCT>TTT	p.S666F		NM_001010924	NP_001010924	Q5VUB5	F1711_HUMAN	hypothetical protein LOC221061 precursor	666	Cytoplasmic (Potential).					integral to membrane				ovary(2)|breast(1)|skin(1)	4						GATGGAGAGAGACTCCGACAT	0.622													8	28					0	0	0.003080	0	0
ITGA8	8516	broad.mit.edu	37	10	15614330	15614330	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:15614330G>A	uc001ioc.1	-	25	2517	c.2517C>T	c.(2515-2517)ATC>ATT	p.I839I	ITGA8_uc010qcb.1_Silent_p.I824I	NM_003638	NP_003629	P53708	ITA8_HUMAN	integrin, alpha 8 precursor	839	Extracellular (Potential).				cell differentiation|cell-cell adhesion|cell-matrix adhesion|integrin-mediated signaling pathway|nervous system development	integrin complex	receptor activity			ovary(3)|lung(3)	6						CCACCTCCAGGATGGTGTCAC	0.443													12	51					0	0	0.001855	0	0
ITGA8	8516	broad.mit.edu	37	10	15646320	15646320	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:15646320G>A	uc001ioc.1	-	20	2005	c.2005C>T	c.(2005-2007)CAC>TAC	p.H669Y	ITGA8_uc010qcb.1_Missense_Mutation_p.H654Y	NM_003638	NP_003629	P53708	ITA8_HUMAN	integrin, alpha 8 precursor	669	Extracellular (Potential).				cell differentiation|cell-cell adhesion|cell-matrix adhesion|integrin-mediated signaling pathway|nervous system development	integrin complex	receptor activity			ovary(3)|lung(3)	6						AGCATAAGGTGATTTTCATCT	0.343													6	25					0	0	0.001168	0	0
CUBN	8029	broad.mit.edu	37	10	16948208	16948208	+	Nonsense_Mutation	SNP	G	A	A	rs137998687	byFrequency	TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:16948208G>A	uc001ioo.2	-	50	7958	c.7906C>T	c.(7906-7908)CGA>TGA	p.R2636*	CUBN_uc009xjq.1_RNA|CUBN_uc009xjr.1_5'UTR	NM_001081	NP_001072	O60494	CUBN_HUMAN	cubilin precursor	2636	CUB 19.				cholesterol metabolic process|cobalamin transport|hormone biosynthetic process|lipoprotein metabolic process|receptor-mediated endocytosis|tissue homeostasis|vitamin D metabolic process	brush border membrane|cytosol|endosome membrane|extrinsic to external side of plasma membrane|lysosomal lumen|lysosomal membrane	calcium ion binding|cobalamin binding|protein homodimerization activity|receptor activity|transporter activity			ovary(9)|breast(4)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|kidney(1)	19					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	TCACCCACTCGAAACTCGAGG	0.279													6	11					0	0	0.001168	0	0
CUBN	8029	broad.mit.edu	37	10	17061853	17061853	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:17061853G>A	uc001ioo.2	-	28	4199	c.4147C>T	c.(4147-4149)CAG>TAG	p.Q1383*		NM_001081	NP_001072	O60494	CUBN_HUMAN	cubilin precursor	1383	CUB 8.				cholesterol metabolic process|cobalamin transport|hormone biosynthetic process|lipoprotein metabolic process|receptor-mediated endocytosis|tissue homeostasis|vitamin D metabolic process	brush border membrane|cytosol|endosome membrane|extrinsic to external side of plasma membrane|lysosomal lumen|lysosomal membrane	calcium ion binding|cobalamin binding|protein homodimerization activity|receptor activity|transporter activity			ovary(9)|breast(4)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|kidney(1)	19					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	CACTGCATCTGAAATCCTTTC	0.473													8	23					0	0	0.006214	0	0
PLXDC2	84898	broad.mit.edu	37	10	20436791	20436791	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:20436791C>T	uc001iqg.1	+	6	1380	c.743C>T	c.(742-744)ACC>ATC	p.T248I	PLXDC2_uc001iqh.1_Missense_Mutation_p.T199I|PLXDC2_uc009xkc.1_RNA	NM_032812	NP_116201	Q6UX71	PXDC2_HUMAN	plexin domain containing 2 precursor	248	Extracellular (Potential).					integral to membrane				ovary(2)|central_nervous_system(1)|skin(1)	4						TTCCAGGCAACCCTGCTCATG	0.448													9	25					0	0	0.006214	0	0
NEBL	10529	broad.mit.edu	37	10	21178817	21178817	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:21178817G>A	uc001iqi.2	-	3	612	c.215C>T	c.(214-216)CCT>CTT	p.P72L	NEBL_uc001iqj.2_RNA|NEBL_uc001iqk.2_Intron	NM_006393	NP_006384	O76041	NEBL_HUMAN	nebulette sarcomeric isoform	72	Nebulin 2.				regulation of actin filament length		actin binding|structural constituent of muscle			ovary(2)	2						GTTTAGCATAGGACTGTCAGT	0.303													11	32					0	0	0.001855	0	0
C10orf113	387638	broad.mit.edu	37	10	21435307	21435307	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:21435307G>A	uc001iqm.2	-	1	121	c.101C>T	c.(100-102)TCT>TTT	p.S34F	NEBL_uc001iqk.2_Intron	NM_001010896	NP_001010896	Q5VZT2	CJ113_HUMAN	hypothetical protein LOC387638	44										ovary(3)|pancreas(1)	4						AGCCACACAAGAAAAAAATGA	0.438													12	30					0	0	0.001855	0	0
PIP4K2A	5305	broad.mit.edu	37	10	22896936	22896936	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:22896936G>A	uc001irl.3	-	3	507	c.259C>T	c.(259-261)CAT>TAT	p.H87Y		NM_005028	NP_005019	P48426	PI42A_HUMAN	phosphatidylinositol-5-phosphate 4-kinase, type	87	PIPK.						1-phosphatidylinositol-4-phosphate 5-kinase activity|1-phosphatidylinositol-5-phosphate 4-kinase activity|ATP binding			ovary(1)|skin(1)	2						AACTTGAAATGGCTCGGCATG	0.463													10	18					0	0	0.010729	0	0
PTF1A	256297	broad.mit.edu	37	10	23482809	23482809	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:23482809G>A	uc001irp.2	+	2	961	c.961G>A	c.(961-963)GAA>AAA	p.E321K		NM_178161	NP_835455	Q7RTS3	PTF1A_HUMAN	pancreas specific transcription factor, 1a	321					endocrine pancreas development|exocrine pancreas development|regulation of transcription, DNA-dependent|tissue development|transcription, DNA-dependent	cytoplasm|transcription factor complex				pancreas(1)|skin(1)	2						CATAGAAAACGAACCACCATT	0.398													25	99					0	0	0.007291	0	0
KIAA1217	56243	broad.mit.edu	37	10	24722007	24722007	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:24722007C>T	uc001iru.3	+	4	1040	c.637C>T	c.(637-639)CTC>TTC	p.L213F	KIAA1217_uc001irs.2_Missense_Mutation_p.L133F|KIAA1217_uc001irt.3_Missense_Mutation_p.L213F|KIAA1217_uc010qcy.1_Missense_Mutation_p.L213F|KIAA1217_uc010qcz.1_Missense_Mutation_p.L213F|KIAA1217_uc001irv.1_Missense_Mutation_p.L63F|KIAA1217_uc010qda.1_RNA	NM_019590	NP_062536	Q5T5P2	SKT_HUMAN	sickle tail isoform 1	213					embryonic skeletal system development	cytoplasm				ovary(5)|skin(2)	7						AATCCGTGCTCTCTTCGTAAG	0.458													7	24					0	0	0.003080	0	0
KIAA1217	56243	broad.mit.edu	37	10	24802349	24802349	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:24802349C>T	uc001iru.3	+	10	2566	c.2163C>T	c.(2161-2163)ATC>ATT	p.I721I	KIAA1217_uc001irs.2_Silent_p.I641I|KIAA1217_uc001irt.3_Silent_p.I686I|KIAA1217_uc010qcy.1_Silent_p.I686I|KIAA1217_uc010qcz.1_Silent_p.I686I|KIAA1217_uc001irv.1_Silent_p.I536I|KIAA1217_uc010qda.1_RNA|KIAA1217_uc001irw.2_Silent_p.I404I|KIAA1217_uc001irz.2_Silent_p.I404I|KIAA1217_uc001irx.2_Silent_p.I404I|KIAA1217_uc001iry.2_Silent_p.I404I	NM_019590	NP_062536	Q5T5P2	SKT_HUMAN	sickle tail isoform 1	721					embryonic skeletal system development	cytoplasm				ovary(5)|skin(2)	7						AAGAGAAGATCGTCAAGAAGT	0.463											OREG0020076	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	23					0	0	0.003080	0	0
ARHGAP21	57584	broad.mit.edu	37	10	24922358	24922358	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:24922358G>A	uc001isb.2	-	6	900	c.413C>T	c.(412-414)TCC>TTC	p.S138F	ARHGAP21_uc009xkl.1_Missense_Mutation_p.S138F|ARHGAP21_uc010qdc.1_5'UTR|ARHGAP21_uc001isc.1_Missense_Mutation_p.S138F|ARHGAP21_uc001isd.1_Missense_Mutation_p.S138F	NM_020824	NP_065875	Q5T5U3	RHG21_HUMAN	Rho GTPase activating protein 21	137	PDZ.				signal transduction	cell junction|cytoplasmic vesicle membrane|cytoskeleton|Golgi membrane	GTPase activator activity|protein binding			ovary(7)|pancreas(1)	8						AATTACTTGGGAATAGGTTTT	0.318													12	24					0	0	0.002450	0	0
MYO3A	53904	broad.mit.edu	37	10	26315456	26315456	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:26315456G>A	uc001isn.2	+	10	1308	c.948G>A	c.(946-948)AAG>AAA	p.K316K	MYO3A_uc009xko.1_Silent_p.K316K|MYO3A_uc009xkp.1_RNA|MYO3A_uc009xkq.1_Silent_p.K316K	NM_017433	NP_059129	Q8NEV4	MYO3A_HUMAN	myosin IIIA	316					protein autophosphorylation|response to stimulus|sensory perception of sound|visual perception	cytoplasm|filamentous actin|filopodium|myosin complex	actin binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|plus-end directed microfilament motor activity|protein serine/threonine kinase activity			ovary(6)|stomach(3)|lung(3)|central_nervous_system(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	18						GCACAGAAAAGGCCAGGTAAT	0.323													8	19					0	0	0.008291	0	0
MYO3A	53904	broad.mit.edu	37	10	26465757	26465757	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:26465757C>T	uc001isn.2	+	31	4781	c.4421C>T	c.(4420-4422)TCT>TTT	p.S1474F	MYO3A_uc009xkp.1_Intron|MYO3A_uc009xkq.1_Intron	NM_017433	NP_059129	Q8NEV4	MYO3A_HUMAN	myosin IIIA	1474					protein autophosphorylation|response to stimulus|sensory perception of sound|visual perception	cytoplasm|filamentous actin|filopodium|myosin complex	actin binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|plus-end directed microfilament motor activity|protein serine/threonine kinase activity			ovary(6)|stomach(3)|lung(3)|central_nervous_system(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	18						CGAGTTTCTTCTCAGCAGTGC	0.373													8	30					0	0	0.008291	0	0
LOC387646	387646	broad.mit.edu	37	10	27538404	27538404	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:27538404G>A	uc001its.2	-	1	2832	c.989C>T	c.(988-990)CCT>CTT	p.P330L		NR_003525				SubName: Full=cDNA FLJ44924 fis, clone BRAMY3014555;												0						CAAATCCAAAGGTTGAACTGT	0.502													24	96					0	0	0.003954	0	0
LOC387646	387646	broad.mit.edu	37	10	27539056	27539056	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:27539056C>T	uc001its.2	-	1	2180	c.337G>A	c.(337-339)GAT>AAT	p.D113N		NR_003525				SubName: Full=cDNA FLJ44924 fis, clone BRAMY3014555;												0						GGTTCTACATCATTACCTGGT	0.542													8	31					0	0	0.004482	0	0
ARMC4	55130	broad.mit.edu	37	10	28224012	28224012	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:28224012C>T	uc009xky.2	-	16	2520	c.2422G>A	c.(2422-2424)GGA>AGA	p.G808R	ARMC4_uc010qds.1_Missense_Mutation_p.G333R|ARMC4_uc010qdt.1_Missense_Mutation_p.G500R|ARMC4_uc001itz.2_Missense_Mutation_p.G808R	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	808							binding			ovary(4)|skin(2)	6						TGGTTTATTCCAACAAGGAGG	0.458													20	59					0	0	0.008871	0	0
ARMC4	55130	broad.mit.edu	37	10	28283909	28283909	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:28283909C>T	uc009xky.2	-	2	261	c.163G>A	c.(163-165)GAA>AAA	p.E55K	ARMC4_uc001itz.2_Missense_Mutation_p.E55K	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	55							binding			ovary(4)|skin(2)	6						TCAAGTGGTTCCACAAAAACA	0.378													4	14					0	0	0.009096	0	0
KIAA1462	57608	broad.mit.edu	37	10	30336586	30336586	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:30336586C>T	uc001iux.2	-	1	215	c.156G>A	c.(154-156)GCG>GCA	p.A52A	KIAA1462_uc001iuy.2_Silent_p.A52A|KIAA1462_uc001iuz.2_5'UTR|KIAA1462_uc009xle.1_Silent_p.A52A	NM_020848	NP_065899	Q9P266	K1462_HUMAN	hypothetical protein LOC57608	52										ovary(4)	4						GTGCGAGGGCCGCAGGGCCAT	0.672													8	26					0	0	0.008291	0	0
ZEB1	6935	broad.mit.edu	37	10	31810601	31810601	+	Missense_Mutation	SNP	G	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:31810601G>C	uc001ivs.3	+	7	2401	c.2338G>C	c.(2338-2340)GAC>CAC	p.D780H	ZEB1_uc001ivr.3_Missense_Mutation_p.D562H|ZEB1_uc010qee.1_Missense_Mutation_p.D562H|ZEB1_uc010qef.1_Missense_Mutation_p.D562H|ZEB1_uc009xlj.1_Missense_Mutation_p.D706H|ZEB1_uc010qeg.1_Missense_Mutation_p.D639H|ZEB1_uc009xlk.1_Missense_Mutation_p.D562H|ZEB1_uc001ivt.3_Missense_Mutation_p.D562H|ZEB1_uc001ivu.3_Missense_Mutation_p.D781H|ZEB1_uc001ivv.3_Missense_Mutation_p.D760H|ZEB1_uc010qeh.1_Missense_Mutation_p.D713H|ZEB1_uc009xlo.1_Missense_Mutation_p.D763H|ZEB1_uc009xlp.2_Missense_Mutation_p.D764H	NM_030751	NP_110378	P37275	ZEB1_HUMAN	zinc finger E-box binding homeobox 1 isoform b	780					cell proliferation|immune response|negative regulation of transcription from RNA polymerase II promoter|positive regulation of neuron differentiation	cytoplasm	E-box binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(3)|central_nervous_system(2)	5		Prostate(175;0.0156)				GCCACAAAAGGACAGTTGTGT	0.428													9	21					0	0	0.008291	0	0
ZEB1	6935	broad.mit.edu	37	10	31812998	31812998	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:31812998C>T	uc001ivs.3	+	8	2802	c.2739C>T	c.(2737-2739)TTC>TTT	p.F913F	ZEB1_uc001ivr.3_Silent_p.F695F|ZEB1_uc010qee.1_Silent_p.F695F|ZEB1_uc010qef.1_Silent_p.F695F|ZEB1_uc009xlk.1_Silent_p.F695F|ZEB1_uc001ivt.3_Silent_p.F695F|ZEB1_uc001ivu.3_Silent_p.F914F|ZEB1_uc001ivv.3_Silent_p.F893F|ZEB1_uc010qeh.1_Silent_p.F846F|ZEB1_uc009xlp.2_Silent_p.F897F	NM_030751	NP_110378	P37275	ZEB1_HUMAN	zinc finger E-box binding homeobox 1 isoform b	913	C2H2-type 5.				cell proliferation|immune response|negative regulation of transcription from RNA polymerase II promoter|positive regulation of neuron differentiation	cytoplasm	E-box binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(3)|central_nervous_system(2)	5		Prostate(175;0.0156)				ACAAGATATTCCAAAAGAGTA	0.358													11	46					0	0	0.013537	0	0
EPC1	80314	broad.mit.edu	37	10	32560821	32560821	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:32560821C>T	uc001iwg.1	-	14	2369	c.2099G>A	c.(2098-2100)AGT>AAT	p.S700N	EPC1_uc001iwi.3_Missense_Mutation_p.S627N|EPC1_uc001iwh.1_Missense_Mutation_p.S677N	NM_025209	NP_079485	Q9H2F5	EPC1_HUMAN	enhancer of polycomb 1	700					histone H2A acetylation|histone H4 acetylation|negative regulation of gene expression, epigenetic|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|regulation of growth|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|nuclear membrane|Piccolo NuA4 histone acetyltransferase complex				ovary(3)|central_nervous_system(1)	4		Prostate(175;0.0199)				TGTAGTACTACTGAGGTGTAA	0.353													4	25					0	0	0.001168	0	0
NRP1	8829	broad.mit.edu	37	10	33481252	33481252	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:33481252C>T	uc001iwx.3	-	13	2542	c.2019G>A	c.(2017-2019)TGG>TGA	p.W673*	NRP1_uc001iwv.3_Nonsense_Mutation_p.W673*|NRP1_uc009xlz.2_Nonsense_Mutation_p.W666*|NRP1_uc001iww.3_Nonsense_Mutation_p.W485*|NRP1_uc001iwy.3_Nonsense_Mutation_p.W666*	NM_003873	NP_003864	O14786	NRP1_HUMAN	neuropilin 1 isoform a	673	Extracellular (Potential).|MAM.				axon guidance|cell adhesion|cell-cell signaling|organ morphogenesis|positive regulation of cell proliferation	extracellular region|integral to membrane|plasma membrane	growth factor binding|heparin binding|metal ion binding|vascular endothelial growth factor receptor activity			central_nervous_system(2)|ovary(1)|skin(1)	4					Palifermin(DB00039)|Pegaptanib(DB04895)	TCAACACACTCCACTTGAGCT	0.493													48	156					0	0	0.014410	0	0
NRP1	8829	broad.mit.edu	37	10	33502411	33502411	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:33502411C>T	uc001iwx.3	-	9	2040	c.1517G>A	c.(1516-1518)CGA>CAA	p.R506Q	NRP1_uc001iwv.3_Missense_Mutation_p.R506Q|NRP1_uc009xlz.2_Missense_Mutation_p.R506Q|NRP1_uc001iww.3_Missense_Mutation_p.R325Q|NRP1_uc001iwy.3_Missense_Mutation_p.R506Q|NRP1_uc001iwz.2_Missense_Mutation_p.R506Q|NRP1_uc001ixa.2_Missense_Mutation_p.R506Q|NRP1_uc001ixb.1_Missense_Mutation_p.R506Q|NRP1_uc001ixc.1_Missense_Mutation_p.R506Q	NM_003873	NP_003864	O14786	NRP1_HUMAN	neuropilin 1 isoform a	506	Extracellular (Potential).|F5/8 type C 2.				axon guidance|cell adhesion|cell-cell signaling|organ morphogenesis|positive regulation of cell proliferation	extracellular region|integral to membrane|plasma membrane	growth factor binding|heparin binding|metal ion binding|vascular endothelial growth factor receptor activity			central_nervous_system(2)|ovary(1)|skin(1)	4					Palifermin(DB00039)|Pegaptanib(DB04895)	CTTGTTCTCTCGGTGCTTCCC	0.527													22	70					0	0	0.014323	0	0
NRP1	8829	broad.mit.edu	37	10	33502446	33502446	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:33502446G>A	uc001iwx.3	-	9	2005	c.1482C>T	c.(1480-1482)ATC>ATT	p.I494I	NRP1_uc001iwv.3_Silent_p.I494I|NRP1_uc009xlz.2_Silent_p.I494I|NRP1_uc001iww.3_Silent_p.I313I|NRP1_uc001iwy.3_Silent_p.I494I|NRP1_uc001iwz.2_Silent_p.I494I|NRP1_uc001ixa.2_Silent_p.I494I|NRP1_uc001ixb.1_Silent_p.I494I|NRP1_uc001ixc.1_Silent_p.I494I	NM_003873	NP_003864	O14786	NRP1_HUMAN	neuropilin 1 isoform a	494	Extracellular (Potential).|F5/8 type C 2.				axon guidance|cell adhesion|cell-cell signaling|organ morphogenesis|positive regulation of cell proliferation	extracellular region|integral to membrane|plasma membrane	growth factor binding|heparin binding|metal ion binding|vascular endothelial growth factor receptor activity			central_nervous_system(2)|ovary(1)|skin(1)	4					Palifermin(DB00039)|Pegaptanib(DB04895)	TGCCCCTCACGATCTTCTCCT	0.547													16	54					0	0	0.004990	0	0
PARD3	56288	broad.mit.edu	37	10	34759087	34759087	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:34759087G>A	uc010qej.1	-	4	508	c.508C>T	c.(508-510)CCC>TCC	p.P170S	PARD3_uc010qek.1_Missense_Mutation_p.P170S|PARD3_uc010qel.1_Missense_Mutation_p.P170S|PARD3_uc010qem.1_Missense_Mutation_p.P170S|PARD3_uc010qen.1_Missense_Mutation_p.P170S|PARD3_uc010qeo.1_Missense_Mutation_p.P170S|PARD3_uc010qep.1_Missense_Mutation_p.P170S|PARD3_uc010qeq.1_Missense_Mutation_p.P170S|PARD3_uc001ixp.1_Missense_Mutation_p.P35S|PARD3_uc001ixq.1_Missense_Mutation_p.P170S|PARD3_uc001ixr.1_Missense_Mutation_p.P170S|PARD3_uc001ixt.1_Missense_Mutation_p.P35S|PARD3_uc001ixu.1_Missense_Mutation_p.P170S	NM_019619	NP_062565	Q8TEW0	PARD3_HUMAN	partitioning-defective protein 3 homolog	170					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|asymmetric cell division|axonogenesis|cell cycle|establishment of epithelial cell polarity|protein complex assembly|protein targeting to membrane|tight junction assembly	cell cortex|cytoskeleton|cytosol|endomembrane system|tight junction	phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3-phosphate binding|phosphatidylinositol-4,5-bisphosphate binding|protein binding			ovary(1)	1		Breast(68;0.0707)				CAGCGTGTGGGATTTTTCCTT	0.498													10	44					0	0	0.010729	0	0
CCNY	219771	broad.mit.edu	37	10	35819114	35819114	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:35819114C>T	uc001iyw.3	+	7	702	c.522C>T	c.(520-522)TTC>TTT	p.F174F	CCNY_uc001iyu.3_Silent_p.F120F|CCNY_uc001iyv.3_Silent_p.F120F|CCNY_uc001iyx.3_Silent_p.F120F|CCNY_uc009xmb.2_Silent_p.F149F|CCNY_uc010qet.1_Silent_p.F41F	NM_145012	NP_659449	Q8ND76	CCNY_HUMAN	cyclin Y isoform 1	174	Cyclin N-terminal.				cell division|G2/M transition of mitotic cell cycle|positive regulation of cyclin-dependent protein kinase activity|regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	cytoplasmic cyclin-dependent protein kinase holoenzyme complex|nucleus|plasma membrane	cyclin-dependent protein kinase regulator activity|protein kinase binding				0						TTTACCGGTTCGTTCGGACAC	0.532													7	17					0	0	0.003080	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37486386	37486386	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:37486386G>A	uc001iza.1	+	29	2625	c.2526G>A	c.(2524-2526)AAG>AAA	p.K842K		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	898						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						TGGAATTGAAGAATGAACAAA	0.338													4	31					0	0	0.004482	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37490169	37490169	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:37490169C>T	uc001iza.1	+	31	2716	c.2617C>T	c.(2617-2619)CGT>TGT	p.R873C		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	929						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						ACAGAGTCTCCGTGAGACTGT	0.274													7	43					0	0	0.010729	0	0
ZNF33B	7582	broad.mit.edu	37	10	43088408	43088408	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:43088408G>A	uc001jaf.1	-	5	2105	c.1990C>T	c.(1990-1992)CCT>TCT	p.P664S	ZNF33B_uc009xmg.1_Intron|ZNF33B_uc001jae.1_Intron|ZNF33B_uc001jag.1_Missense_Mutation_p.P552S|ZNF33B_uc001jad.2_Intron	NM_006955	NP_008886	Q06732	ZN33B_HUMAN	zinc finger protein 33B	664						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						CATTTATAAGGCTTTTCTTGT	0.393													8	48					0	0	0.008291	0	0
BMS1	9790	broad.mit.edu	37	10	43315783	43315784	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:43315783_43315784CC>TT	uc001jaj.2	+	16	3038_3039	c.2680_2681CC>TT	c.(2680-2682)CCC>TTC	p.P894F		NM_014753	NP_055568	Q14692	BMS1_HUMAN	BMS1-like, ribosome assembly protein	894					ribosome assembly	nucleolus	ATP binding|GTP binding|GTPase activity			ovary(2)|upper_aerodigestive_tract(1)	3						TGAAAATGTTCCCTGTGAATTT	0.485													5	62					0	0	0.004672	0	0
BMS1	9790	broad.mit.edu	37	10	43319084	43319084	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:43319084C>T	uc001jaj.2	+	21	3666	c.3308C>T	c.(3307-3309)CCT>CTT	p.P1103L		NM_014753	NP_055568	Q14692	BMS1_HUMAN	BMS1-like, ribosome assembly protein	1103					ribosome assembly	nucleolus	ATP binding|GTP binding|GTPase activity			ovary(2)|upper_aerodigestive_tract(1)	3						ACTTGGTATCCTGTTTCCATC	0.408													6	27					0	0	0.004482	0	0
SYT15	83849	broad.mit.edu	37	10	46968689	46968689	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:46968689G>A	uc001jea.2	-	3	400	c.247C>T	c.(247-249)CTT>TTT	p.L83F	SYT15_uc001jdz.2_Missense_Mutation_p.L83F|SYT15_uc001jeb.2_5'UTR|SYT15_uc010qfp.1_5'Flank	NM_031912	NP_114118	Q9BQS2	SYT15_HUMAN	synaptotagmin XV isoform a	83	Cytoplasmic (Potential).					integral to membrane|plasma membrane					0						CGGCCTTGAAGGGTTGGGGGC	0.637													5	89					0	0	0.000602	0	0
GPRIN2	9721	broad.mit.edu	37	10	46999410	46999410	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:46999410C>T	uc001jec.2	+	3	665	c.530C>T	c.(529-531)GCT>GTT	p.A177V	GPRIN2_uc010qfq.1_5'Flank	NM_014696	NP_055511	O60269	GRIN2_HUMAN	G protein-regulated inducer of neurite outgrowth	177											0						AGGGACCTGGCTCCTGAGGAT	0.632													6	55					0	0	0.001168	0	0
GPRIN2	9721	broad.mit.edu	37	10	46999750	46999750	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:46999750C>T	uc001jec.2	+	3	1005	c.870C>T	c.(868-870)TCC>TCT	p.S290S	GPRIN2_uc010qfq.1_Silent_p.S53S	NM_014696	NP_055511	O60269	GRIN2_HUMAN	G protein-regulated inducer of neurite outgrowth	290											0						CTGGGCATTCCCATTGCTGTG	0.597													5	82					0	0	0.001168	0	0
PPYR1	5540	broad.mit.edu	37	10	47087060	47087060	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:47087060C>T	uc001jee.2	+	3	696	c.277C>T	c.(277-279)CTC>TTC	p.L93F	ANXA8_uc001jed.3_Intron|PPYR1_uc009xna.2_Missense_Mutation_p.L93F	NM_005972	NP_005963	P50391	NPY4R_HUMAN	pancreatic polypeptide receptor 1	93	Helical; Name=2; (Potential).				blood circulation|digestion|feeding behavior	integral to plasma membrane				ovary(1)|skin(1)	2						CATGTGCCTCCTCTGCCAGCC	0.562													10	77					0	0	0.006214	0	0
PPYR1	5540	broad.mit.edu	37	10	47087788	47087788	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:47087788C>T	uc001jee.2	+	3	1424	c.1005C>T	c.(1003-1005)GCC>GCT	p.A335A	ANXA8_uc001jed.3_Intron|PPYR1_uc009xna.2_Silent_p.A335A	NM_005972	NP_005963	P50391	NPY4R_HUMAN	pancreatic polypeptide receptor 1	335	Cytoplasmic (Potential).				blood circulation|digestion|feeding behavior	integral to plasma membrane				ovary(1)|skin(1)	2						AGATCAAGGCCCTGGTGCTGA	0.552													10	82					0	0	0.010729	0	0
RBP3	5949	broad.mit.edu	37	10	48387840	48387840	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:48387840C>T	uc001jez.2	-	1	3152	c.3038G>A	c.(3037-3039)GGA>GAA	p.G1013E		NM_002900	NP_002891	P10745	RET3_HUMAN	retinol-binding protein 3 precursor	1013	4 X approximate tandem repeats.|4.				lipid metabolic process|proteolysis|transport|visual perception	interphotoreceptor matrix	retinal binding|serine-type peptidase activity			large_intestine(1)|central_nervous_system(1)	2					Vitamin A(DB00162)	GGGCACAATTCCAGGAATGCG	0.602													10	46					0	0	0.010729	0	0
RBP3	5949	broad.mit.edu	37	10	48387922	48387923	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:48387922_48387923CC>TT	uc001jez.2	-	1	3069_3070	c.2955_2956GG>AA	c.(2953-2958)CTGGGG>CTAAGG	p.G986R		NM_002900	NP_002891	P10745	RET3_HUMAN	retinol-binding protein 3 precursor	986	4 X approximate tandem repeats.|4.				lipid metabolic process|proteolysis|transport|visual perception	interphotoreceptor matrix	retinal binding|serine-type peptidase activity			large_intestine(1)|central_nervous_system(1)	2					Vitamin A(DB00162)	AGGTCAGCCCCCAGGATCTCGG	0.614													13	51					0	0	0.004672	0	0
RBP3	5949	broad.mit.edu	37	10	48389017	48389017	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:48389017C>T	uc001jez.2	-	1	1975	c.1861G>A	c.(1861-1863)GAG>AAG	p.E621K		NM_002900	NP_002891	P10745	RET3_HUMAN	retinol-binding protein 3 precursor	621	4 X approximate tandem repeats.|2.				lipid metabolic process|proteolysis|transport|visual perception	interphotoreceptor matrix	retinal binding|serine-type peptidase activity			large_intestine(1)|central_nervous_system(1)	2					Vitamin A(DB00162)	TCCAGGGCCTCCTCGGCCAGC	0.672													11	23					0	0	0.013537	0	0
RBP3	5949	broad.mit.edu	37	10	48390152	48390152	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:48390152G>A	uc001jez.2	-	1	840	c.726C>T	c.(724-726)ATC>ATT	p.I242I		NM_002900	NP_002891	P10745	RET3_HUMAN	retinol-binding protein 3 precursor	242	4 X approximate tandem repeats.|1.				lipid metabolic process|proteolysis|transport|visual perception	interphotoreceptor matrix	retinal binding|serine-type peptidase activity			large_intestine(1)|central_nervous_system(1)	2					Vitamin A(DB00162)	GGATGTGCGCGATGTCCTCGG	0.647													7	20					0	0	0.003080	0	0
GDF2	2658	broad.mit.edu	37	10	48413840	48413840	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:48413840C>T	uc001jfa.1	-	2	1191	c.1028G>A	c.(1027-1029)AGC>AAC	p.S343N		NM_016204	NP_057288	Q9UK05	GDF2_HUMAN	growth differentiation factor 2 precursor	343					activin receptor signaling pathway|BMP signaling pathway|cartilage development|cellular iron ion homeostasis|growth|negative regulation of angiogenesis|negative regulation of blood vessel endothelial cell migration|negative regulation of cell growth|negative regulation of DNA replication|negative regulation of endothelial cell proliferation|ossification|pathway-restricted SMAD protein phosphorylation|patterning of blood vessels|positive regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of transcription, DNA-dependent	extracellular space	cytokine activity|growth factor activity			ovary(2)|skin(1)	3						AATGATCCAGCTGTCCCAGCC	0.597													10	26					0	0	0.010729	0	0
GDF2	2658	broad.mit.edu	37	10	48414222	48414222	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:48414222G>A	uc001jfa.1	-	2	809	c.646C>T	c.(646-648)CGG>TGG	p.R216W		NM_016204	NP_057288	Q9UK05	GDF2_HUMAN	growth differentiation factor 2 precursor	216					activin receptor signaling pathway|BMP signaling pathway|cartilage development|cellular iron ion homeostasis|growth|negative regulation of angiogenesis|negative regulation of blood vessel endothelial cell migration|negative regulation of cell growth|negative regulation of DNA replication|negative regulation of endothelial cell proliferation|ossification|pathway-restricted SMAD protein phosphorylation|patterning of blood vessels|positive regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of transcription, DNA-dependent	extracellular space	cytokine activity|growth factor activity			ovary(2)|skin(1)	3						GAGTCGGACCGGACCCAGCGC	0.587													13	38					0	0	0.004990	0	0
ARHGAP22	58504	broad.mit.edu	37	10	49687790	49687790	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:49687790C>T	uc001jgt.2	-	4	637	c.340G>A	c.(340-342)GAG>AAG	p.E114K	ARHGAP22_uc001jgs.2_Missense_Mutation_p.E24K|ARHGAP22_uc001jgu.2_Missense_Mutation_p.E114K|ARHGAP22_uc010qgl.1_Intron|ARHGAP22_uc010qgm.1_Missense_Mutation_p.E120K|ARHGAP22_uc001jgv.2_5'UTR|uc001jgw.2_5'Flank	NM_021226	NP_067049	Q7Z5H3	RHG22_HUMAN	Rho GTPase activating protein 2	114	PH.				angiogenesis|cell differentiation|regulation of small GTPase mediated signal transduction|regulation of transcription, DNA-dependent|small GTPase mediated signal transduction|transcription, DNA-dependent	cytosol|nucleus	GTPase activator activity			ovary(1)	1						GGCACCTTCTCCCGCTCCCCG	0.677													6	8					0	0	0.001168	0	0
C10orf72	196740	broad.mit.edu	37	10	50255039	50255039	+	Nonsense_Mutation	SNP	T	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:50255039T>A	uc001jhf.2	-	7	855	c.826A>T	c.(826-828)AAA>TAA	p.K276*		NM_001031746	NP_001026916	Q8IW00	CJ072_HUMAN	hypothetical protein LOC196740 isoform 1	276	Cytoplasmic (Potential).					integral to membrane|plasma membrane					0						AGCGTGACTTTTCTCTGTGGT	0.448													52	141					0	0	0.014410	0	0
C10orf71	118461	broad.mit.edu	37	10	50531678	50531678	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:50531678G>A	uc010qgp.1	+	3	1427	c.1088G>A	c.(1087-1089)GGA>GAA	p.G363E		NM_199459	NP_955629	Q711Q0	CJ071_HUMAN	hypothetical protein LOC118461 isoform 2	363											0						GCTGTGGAAGGAAAAGCTCCC	0.532													10	38					0	0	0.008291	0	0
ERCC6	2074	broad.mit.edu	37	10	50701288	50701288	+	Silent	SNP	A	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:50701288A>G	uc001jhs.3	-	8	1850	c.1696T>C	c.(1696-1698)TTG>CTG	p.L566L	ERCC6_uc010qgr.1_Intron|ERCC6_uc001jhr.3_5'UTR	NM_000124	NP_000115	Q03468	ERCC6_HUMAN	excision repair cross-complementing rodent	566	Helicase ATP-binding.				base-excision repair|positive regulation of transcription elongation, DNA-dependent|transcription from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair	nucleolus|soluble fraction|transcription elongation factor complex	ATP binding|chromatin binding|DNA binding|DNA-dependent ATPase activity|helicase activity|protein C-terminus binding|protein complex binding|protein N-terminus binding			lung(5)|breast(5)|ovary(3)|large_intestine(2)|skin(1)	16						GTTGGACCCAACCCCTCAAAC	0.443								Direct_reversal_of_damage|NER					4	18					0	0	0.000602	0	0
C10orf53	282966	broad.mit.edu	37	10	50916662	50916662	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:50916662G>A	uc001jid.1	+	3	533	c.473G>A	c.(472-474)TGA>TAA	p.*158*		NM_182554	NP_872360	Q8N6V4	CJ053_HUMAN	chromosome 10 open reading frame 53 isoform a	158											0		all_neural(218;0.107)				cagccctactgaaatcgacag	0													13	52					0	0	0.002450	0	0
ASAH2	56624	broad.mit.edu	37	10	52003094	52003094	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:52003094G>A	uc001jjd.2	-	3	378	c.378C>T	c.(376-378)TCC>TCT	p.S126S	ASAH2_uc009xos.2_Silent_p.S126S	NM_019893	NP_063946	Q9NR71	ASAH2_HUMAN	N-acylsphingosine amidohydrolase 2 isoform a	126	Lumenal (Potential).				apoptosis|ceramide metabolic process|signal transduction	integral to membrane|mitochondrion|plasma membrane	ceramidase activity				0						CATTCTGGCCGGATTTGCCAT	0.493													10	34					0	0	0.008291	0	0
A1CF	29974	broad.mit.edu	37	10	52573619	52573620	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:52573619_52573620GG>AA	uc001jjj.2	-	10	1532_1533	c.1344_1345CC>TT	c.(1342-1347)CCCCAG>CCTTAG	p.Q449*	A1CF_uc010qhn.1_Nonsense_Mutation_p.Q449*|A1CF_uc001jji.2_Nonsense_Mutation_p.Q441*|A1CF_uc001jjh.2_Nonsense_Mutation_p.Q449*|A1CF_uc010qho.1_Nonsense_Mutation_p.Q457*|A1CF_uc009xov.2_Nonsense_Mutation_p.Q441*	NM_138932	NP_620310	Q9NQ94	A1CF_HUMAN	apobec-1 complementation factor isoform 2	449					cytidine to uridine editing|mRNA modification|mRNA processing|protein stabilization	apolipoprotein B mRNA editing enzyme complex|endoplasmic reticulum|nucleoplasm	nucleotide binding|protein binding|single-stranded RNA binding			central_nervous_system(1)	1						TTACCTACCTGGGGAGCGAGTT	0.391													17	48					0	0	0.004672	0	0
PRKG1	5592	broad.mit.edu	37	10	54040643	54040643	+	Missense_Mutation	SNP	C	T	T	rs78350819		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:54040643C>T	uc001jjm.2	+	13	1647	c.1453C>T	c.(1453-1455)CTC>TTC	p.L485F	PRKG1_uc001jjo.2_Missense_Mutation_p.L500F|PRKG1_uc009xow.1_Missense_Mutation_p.L203F|uc001jjq.1_Intron	NM_001098512	NP_001091982	Q13976	KGP1_HUMAN	protein kinase, cGMP-dependent, type I isoform	485	Protein kinase.				actin cytoskeleton organization|platelet activation|signal transduction	cytosol	ATP binding|cGMP binding|cGMP-dependent protein kinase activity			lung(2)|stomach(1)|ovary(1)|central_nervous_system(1)|skin(1)	6		all_cancers(4;2.13e-08)|all_epithelial(4;2.44e-08)|all_lung(4;0.000173)		all cancers(4;1.18e-05)|GBM - Glioblastoma multiforme(4;0.000359)|Epithelial(53;0.00532)|Lung(62;0.0606)		TTACAGGGACCTCAAGCCAGA	0.413													11	28					0	0	0.008291	0	0
PRKG1	5592	broad.mit.edu	37	10	54040660	54040660	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:54040660C>T	uc001jjm.2	+	13	1664	c.1470C>T	c.(1468-1470)CTC>CTT	p.L490L	PRKG1_uc001jjo.2_Silent_p.L505L|PRKG1_uc009xow.1_Silent_p.L208L|uc001jjq.1_Intron	NM_001098512	NP_001091982	Q13976	KGP1_HUMAN	protein kinase, cGMP-dependent, type I isoform	490	Protein kinase.				actin cytoskeleton organization|platelet activation|signal transduction	cytosol	ATP binding|cGMP binding|cGMP-dependent protein kinase activity			lung(2)|stomach(1)|ovary(1)|central_nervous_system(1)|skin(1)	6		all_cancers(4;2.13e-08)|all_epithelial(4;2.44e-08)|all_lung(4;0.000173)		all cancers(4;1.18e-05)|GBM - Glioblastoma multiforme(4;0.000359)|Epithelial(53;0.00532)|Lung(62;0.0606)		CAGAAAATCTCATCCTAGATC	0.388													11	29					0	0	0.002450	0	0
PCDH15	65217	broad.mit.edu	37	10	55569166	55569166	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:55569166C>T	uc010qhs.1	-	37	5054	c.4659G>A	c.(4657-4659)ATG>ATA	p.M1553I	PCDH15_uc010qhq.1_Intron|PCDH15_uc010qhr.1_Intron|PCDH15_uc010qht.1_Missense_Mutation_p.M1546I|PCDH15_uc010qhu.1_3'UTR	NM_001142769	NP_001136241	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD2-1 precursor	Error:Variant_position_missing_in_Q96QU1_after_alignment					equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				TCTTAAAAATCATGGGGAATA	0.423										HNSCC(58;0.16)			13	59					0	0	0.001855	0	0
SLC16A9	220963	broad.mit.edu	37	10	61413485	61413485	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:61413485C>T	uc010qig.1	-	5	1748	c.1299G>A	c.(1297-1299)GGG>GGA	p.G433G		NM_194298	NP_919274	Q7RTY1	MOT9_HUMAN	solute carrier family 16 (monocarboxylic acid	433	Helical; (Potential).				urate metabolic process	integral to membrane|plasma membrane	symporter activity			skin(2)|ovary(1)	3						ACATTAATATCCCATAGGCAT	0.403													14	18					0	0	0.006122	0	0
ANK3	288	broad.mit.edu	37	10	61829254	61829254	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:61829254G>A	uc001jky.2	-	37	11577	c.11385C>T	c.(11383-11385)TCC>TCT	p.S3795S	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	3795					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TCTGTATAGTGGAAGAATCCA	0.363													10	51					0	0	0.006214	0	0
ANK3	288	broad.mit.edu	37	10	61831637	61831637	+	Missense_Mutation	SNP	T	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:61831637T>G	uc001jky.2	-	37	9194	c.9002A>C	c.(9001-9003)AAA>ACA	p.K3001T	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	3001					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						AACTGTCTCTTTACTCATGCT	0.363													8	23					0	0	0.003080	0	0
ANK3	288	broad.mit.edu	37	10	61831953	61831953	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:61831953C>T	uc001jky.2	-	37	8878	c.8686G>A	c.(8686-8688)GAA>AAA	p.E2896K	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	2896					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						GACATAAATTCATTCTTTTGA	0.353													9	36					0	0	0.004482	0	0
ANK3	288	broad.mit.edu	37	10	61832650	61832650	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:61832650C>T	uc001jky.2	-	37	8181	c.7989G>A	c.(7987-7989)GAG>GAA	p.E2663E	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	2663					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						GTGCCTTCTCCTCGGCCTTGG	0.547													9	31					0	0	0.010729	0	0
ANK3	288	broad.mit.edu	37	10	61834328	61834328	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:61834328C>T	uc001jky.2	-	37	6503	c.6311G>A	c.(6310-6312)GGA>GAA	p.G2104E	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	2104					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						AGTATCTGTTCCAAAAAAGGA	0.408													13	34					0	0	0.013537	0	0
ZNF365	22891	broad.mit.edu	37	10	64136000	64136000	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:64136000C>T	uc001jmc.2	+	2	363	c.48C>T	c.(46-48)TCC>TCT	p.S16S	ZNF365_uc001jly.3_Silent_p.S31S|ZNF365_uc001jmb.3_Silent_p.S16S|ZNF365_uc001jlz.3_Silent_p.S16S|ZNF365_uc001jma.3_Intron	NM_199451	NP_955523	Q70YC4	TALAN_HUMAN	zinc finger protein 365 isoform C	Error:Variant_position_missing_in_Q70YC4_after_alignment										ovary(1)|skin(1)	2	Prostate(12;0.0297)|all_hematologic(501;0.228)					GGCAGGAGTCCTTTGAGAATG	0.493													11	40					0	0	0.010729	0	0
JMJD1C	221037	broad.mit.edu	37	10	64968329	64968329	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:64968329G>A	uc001jmn.2	-	10	3400	c.3100C>T	c.(3100-3102)CCC>TCC	p.P1034S	JMJD1C_uc001jml.2_Missense_Mutation_p.P815S|JMJD1C_uc001jmm.2_Missense_Mutation_p.P746S|JMJD1C_uc010qiq.1_Missense_Mutation_p.P852S|JMJD1C_uc009xpi.2_Missense_Mutation_p.P852S|JMJD1C_uc009xpj.1_RNA|JMJD1C_uc009xpk.1_Missense_Mutation_p.P71S	NM_032776	NP_116165	Q15652	JHD2C_HUMAN	jumonji domain containing 1C isoform a	1034					blood coagulation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	histone demethylase activity (H3-K9 specific)|metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|thyroid hormone receptor binding			ovary(4)|breast(1)|central_nervous_system(1)	6	Prostate(12;0.0119)|all_hematologic(501;0.191)					GTTGTAAAGGGAGCAACATCA	0.408													23	78					0	0	0.002780	0	0
CTNNA3	29119	broad.mit.edu	37	10	67862927	67862927	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:67862927C>T	uc009xpn.1	-	14	2088	c.1965G>A	c.(1963-1965)GGG>GGA	p.G655G	CTNNA3_uc001jmw.2_Silent_p.G655G	NM_001127384	NP_001120856	Q9UI47	CTNA3_HUMAN	catenin, alpha 3	655					cell-cell adhesion	actin cytoskeleton|cytoplasm|fascia adherens	cadherin binding|structural molecule activity			skin(3)|ovary(2)|pancreas(1)|lung(1)|central_nervous_system(1)	8						TATCAGTTTTCCCTTCGGTCT	0.488													14	21					0	0	0.003163	0	0
CTNNA3	29119	broad.mit.edu	37	10	68526108	68526108	+	Missense_Mutation	SNP	G	A	A	rs115276158	byFrequency	TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:68526108G>A	uc009xpn.1	-	9	1318	c.1195C>T	c.(1195-1197)CTC>TTC	p.L399F	CTNNA3_uc001jmw.2_Missense_Mutation_p.L399F|CTNNA3_uc001jmx.3_Missense_Mutation_p.L399F	NM_001127384	NP_001120856	Q9UI47	CTNA3_HUMAN	catenin, alpha 3	399					cell-cell adhesion	actin cytoskeleton|cytoplasm|fascia adherens	cadherin binding|structural molecule activity			skin(3)|ovary(2)|pancreas(1)|lung(1)|central_nervous_system(1)	8						GCTTCAATGAGAACCAAAAGA	0.403													10	45					0	0	0.006214	0	0
LRRTM3	347731	broad.mit.edu	37	10	68688078	68688078	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:68688078C>T	uc001jmz.1	+	2	1954	c.1404C>T	c.(1402-1404)TCC>TCT	p.S468S	CTNNA3_uc009xpn.1_Intron|CTNNA3_uc001jmw.2_Intron|CTNNA3_uc001jmx.3_Intron|CTNNA3_uc009xpo.1_Intron|LRRTM3_uc001jmy.2_Silent_p.S468S	NM_178011	NP_821079	Q86VH5	LRRT3_HUMAN	leucine rich repeat transmembrane neuronal 3	468	Cytoplasmic (Potential).					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3						AAAGACAGTCCCTAAAGCAAA	0.522													9	30					0	0	0.006214	0	0
HERC4	26091	broad.mit.edu	37	10	69726449	69726449	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:69726449G>A	uc001jng.3	-	16	2228	c.1917C>T	c.(1915-1917)GCC>GCT	p.A639A	HERC4_uc009xpq.2_Silent_p.A180A|HERC4_uc001jnf.3_RNA|HERC4_uc001jnh.3_Silent_p.A639A|HERC4_uc009xpr.2_Silent_p.A639A|HERC4_uc001jni.3_Silent_p.A383A|HERC4_uc001jnj.2_Silent_p.A639A	NM_022079	NP_071362	Q5GLZ8	HERC4_HUMAN	hect domain and RLD 4 isoform a	639					cell differentiation|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|spermatogenesis	cytosol	ubiquitin-protein ligase activity			ovary(1)|breast(1)|skin(1)	3						CCATTCCATAGGCCTGCTGTT	0.289													5	5					0	0	0.001984	0	0
MYPN	84665	broad.mit.edu	37	10	69902759	69902759	+	Missense_Mutation	SNP	A	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:69902759A>T	uc001jnm.3	+	4	1150	c.965A>T	c.(964-966)AAT>ATT	p.N322I	MYPN_uc001jnl.1_Missense_Mutation_p.N322I|MYPN_uc001jnn.3_Missense_Mutation_p.N47I|MYPN_uc001jno.3_Missense_Mutation_p.N322I|MYPN_uc001jnp.1_Missense_Mutation_p.N322I|MYPN_uc009xps.2_Missense_Mutation_p.N322I|MYPN_uc009xpt.2_Missense_Mutation_p.N322I|MYPN_uc010qit.1_Missense_Mutation_p.N28I|MYPN_uc010qiu.1_RNA	NM_032578	NP_115967	Q86TC9	MYPN_HUMAN	myopalladin	322	Interaction with CARP.|Ig-like 1.					nucleus|sarcomere	actin binding			ovary(3)|skin(2)	5						CAGGCAGGAAATCTGCACTCA	0.478													9	40					0	0	0.004482	0	0
MYPN	84665	broad.mit.edu	37	10	69934371	69934371	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:69934371C>T	uc001jnm.3	+	12	2707	c.2522C>T	c.(2521-2523)CCA>CTA	p.P841L	MYPN_uc001jnn.3_Missense_Mutation_p.P566L|MYPN_uc001jno.3_Missense_Mutation_p.P841L|MYPN_uc009xpt.2_Missense_Mutation_p.P841L|MYPN_uc010qit.1_Missense_Mutation_p.P547L|MYPN_uc010qiu.1_RNA	NM_032578	NP_115967	Q86TC9	MYPN_HUMAN	myopalladin	841	Pro-rich.					nucleus|sarcomere	actin binding			ovary(3)|skin(2)	5						CCTGCCATCCCACCCACAAAT	0.522													13	26					0	0	0.003163	0	0
SLC25A16	8034	broad.mit.edu	37	10	70248224	70248224	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:70248224G>A	uc001joi.2	-	7	1225	c.773C>T	c.(772-774)TCC>TTC	p.S258F	SLC25A16_uc010qix.1_Missense_Mutation_p.S124F|SLC25A16_uc010qiy.1_Missense_Mutation_p.S160F|SLC25A16_uc001joj.2_Missense_Mutation_p.S160F	NM_152707	NP_689920	P16260	GDC_HUMAN	solute carrier family 25, member 16	258	Solcar 3.|Helical; Name=5; (Potential).				coenzyme biosynthetic process|pantothenate metabolic process	integral to membrane|mitochondrial inner membrane	binding|solute:solute antiporter activity				0						AGAAACTTACGATATTGTCTG	0.318													4	12					0	0	0.009096	0	0
CCAR1	55749	broad.mit.edu	37	10	70509354	70509354	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:70509354C>T	uc001joo.2	+	10	1149	c.1030C>T	c.(1030-1032)CCA>TCA	p.P344S	CCAR1_uc001jol.1_RNA|CCAR1_uc001jom.1_Missense_Mutation_p.P149S|CCAR1_uc009xpx.1_Missense_Mutation_p.P318S|CCAR1_uc001jon.1_Missense_Mutation_p.P290S|CCAR1_uc010qiz.1_Missense_Mutation_p.P329S|CCAR1_uc010qja.1_Missense_Mutation_p.P329S|CCAR1_uc010qjb.1_RNA	NM_018237	NP_060707	Q8IX12	CCAR1_HUMAN	cell-cycle and apoptosis regulatory protein 1	344	Arg-rich.				apoptosis|cell cycle|nuclear mRNA splicing, via spliceosome|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm|perinuclear region of cytoplasm	calcium ion binding|nucleic acid binding|protein binding			ovary(6)|large_intestine(1)	7						GGAAAGATCTCCACGAAGAGA	0.433													16	23					0	0	0.003163	0	0
KIAA1279	26128	broad.mit.edu	37	10	70775992	70775992	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:70775992C>T	uc001joy.2	+	7	1782	c.1686C>T	c.(1684-1686)CCC>CCT	p.P562P		NM_015634	NP_056449	Q96EK5	KBP_HUMAN	KIF1 binding protein	562					cell differentiation|mitochondrial transport|nervous system development	mitochondrion	kinesin binding			ovary(1)	1						CTGCAGATCCCAAGAAAGAGC	0.423													7	30					0	0	0.001984	0	0
TACR2	6865	broad.mit.edu	37	10	71174784	71174784	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:71174784G>A	uc001jpn.2	-	2	1099	c.504C>T	c.(502-504)TTC>TTT	p.F168F		NM_001057	NP_001048	P21452	NK2R_HUMAN	tachykinin receptor 2	168	Helical; Name=4; (Potential).				excretion|muscle contraction	integral to plasma membrane	tachykinin receptor activity			prostate(1)	1					Clonidine(DB00575)|Octreotide(DB00104)	CGGTGGAGTAGAAGCACTGAG	0.652													10	37					0	0	0.010729	0	0
KIAA1274	27143	broad.mit.edu	37	10	72292515	72292515	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:72292515C>T	uc001jrd.3	+	6	1053	c.772C>T	c.(772-774)CTC>TTC	p.L258F		NM_014431	NP_055246	Q9ULE6	PALD_HUMAN	KIAA1274	258										ovary(2)|central_nervous_system(1)	3						CAAGCGGCCCCTCTTCCTGCA	0.627													17	55					0	0	0.006122	0	0
KIAA1274	27143	broad.mit.edu	37	10	72298652	72298652	+	Missense_Mutation	SNP	A	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:72298652A>C	uc001jrd.3	+	13	1738	c.1457A>C	c.(1456-1458)GAG>GCG	p.E486A	KIAA1274_uc001jre.3_5'Flank	NM_014431	NP_055246	Q9ULE6	PALD_HUMAN	KIAA1274	486										ovary(2)|central_nervous_system(1)	3						CCACAGCGGGAGGACGATCTG	0.677													6	25					0	0	0.001984	0	0
ADAMTS14	140766	broad.mit.edu	37	10	72520494	72520494	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:72520494G>A	uc001jrh.2	+	22	3557	c.3557G>A	c.(3556-3558)GGG>GAG	p.G1186E	ADAMTS14_uc001jrg.2_Missense_Mutation_p.G1189E	NM_080722	NP_542453	Q8WXS8	ATS14_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1186	Pro-rich.				collagen catabolic process|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(5)|upper_aerodigestive_tract(1)	6						ACCCCCGGGGGGCTGCCTTGG	0.642													8	25					0	0	0.004482	0	0
C10orf27	219793	broad.mit.edu	37	10	72534976	72534976	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:72534976G>A	uc001jrj.1	-	8	1131	c.741C>T	c.(739-741)ATC>ATT	p.I247I	C10orf27_uc010qjm.1_Silent_p.I248I|C10orf27_uc009xqh.1_Intron|C10orf27_uc010qjn.1_Silent_p.I246I|C10orf27_uc009xqi.1_RNA	NM_152710	NP_689923	Q96M53	SPATL_HUMAN	stromal protein associated with thymii and lymph	247					cell differentiation|multicellular organismal development|spermatogenesis	cytosol				skin(1)	1						GCCAGAACTGGATTGCGCTTA	0.597													7	29					0	0	0.003080	0	0
CDH23	64072	broad.mit.edu	37	10	73464754	73464754	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:73464754C>T	uc001jrx.3	+	24	3197	c.2820C>T	c.(2818-2820)ATC>ATT	p.I940I	CDH23_uc001jry.2_Silent_p.I556I|CDH23_uc001jrz.2_Silent_p.I556I	NM_022124	NP_071407	Q9H251	CAD23_HUMAN	cadherin-like 23 isoform 1 precursor	940	Cadherin 9.|Extracellular (Potential).				calcium ion transport|calcium-dependent cell-cell adhesion|cytosolic calcium ion homeostasis|equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	cytosol|integral to membrane|plasma membrane|stereocilium	calcium ion binding|protein binding			central_nervous_system(5)|large_intestine(4)|ovary(2)	11						ACTTCCTCATCAACAGCAGCA	0.672													13	55					0	0	0.002450	0	0
SEC24C	9632	broad.mit.edu	37	10	75529378	75529378	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:75529378C>T	uc001juw.2	+	20	2748	c.2569C>T	c.(2569-2571)CGG>TGG	p.R857W	SEC24C_uc001jux.2_Missense_Mutation_p.R857W|SEC24C_uc010qko.1_Missense_Mutation_p.R738W|SEC24C_uc010qkp.1_Missense_Mutation_p.R105W|SEC24C_uc010qkq.1_Missense_Mutation_p.R105W|FUT11_uc001juy.1_5'Flank|FUT11_uc001juz.1_5'Flank|FUT11_uc001jva.2_5'Flank	NM_004922	NP_004913	P53992	SC24C_HUMAN	SEC24-related protein C	857					COPII vesicle coating|intracellular protein transport|post-translational protein modification|protein N-linked glycosylation via asparagine	COPII vesicle coat|cytosol|endoplasmic reticulum membrane|Golgi membrane|perinuclear region of cytoplasm	protein binding|zinc ion binding			skin(2)|central_nervous_system(1)	3	Prostate(51;0.0112)					TCCAGCATATCGGGGAGTCCT	0.542													14	29					0	0	0.004007	0	0
DUSP13	51207	broad.mit.edu	37	10	76867938	76867938	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:76867938C>T	uc001jws.2	-	2	234	c.179G>A	c.(178-180)TGG>TAG	p.W60*	DUSP13_uc001jwu.2_Intron|DUSP13_uc001jww.2_Intron|DUSP13_uc009xrs.2_5'UTR|DUSP13_uc001jwt.2_5'UTR|DUSP13_uc001jwv.2_Intron	NM_001007271	NP_001007272	Q6B8I1	MDSP_HUMAN	muscle-restricted dual specificity phosphatase	60	Tyrosine-protein phosphatase.					cytoplasm	protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity				0	all_cancers(46;0.0207)|all_epithelial(25;0.00126)|Prostate(51;0.0112)|Ovarian(15;0.0348)					GCCCAGCTTCCACAGCTCAAA	0.662													15	38					0	0	0.004007	0	0
COMTD1	118881	broad.mit.edu	37	10	76995454	76995454	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:76995454G>A	uc001jxb.2	-	2	226	c.142C>T	c.(142-144)CCC>TCC	p.P48S	COMTD1_uc001jxc.1_Missense_Mutation_p.S11F	NM_144589	NP_653190	Q86VU5	CMTD1_HUMAN	catechol-O-methyltransferase domain containing	48						integral to membrane	O-methyltransferase activity				0	all_cancers(46;0.0642)|all_epithelial(25;0.00604)|Prostate(51;0.0112)|Ovarian(15;0.183)					TCCTCGGGGGGAAGCAGGCAC	0.706													3	7					0	0	0.000602	0	0
KCNMA1	3778	broad.mit.edu	37	10	78799304	78799304	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:78799304G>A	uc001jxn.2	-	15	2018	c.1841C>T	c.(1840-1842)TCC>TTC	p.S614F	KCNMA1_uc001jxj.2_Missense_Mutation_p.S614F|KCNMA1_uc001jxk.1_Missense_Mutation_p.S229F|KCNMA1_uc009xrt.1_Missense_Mutation_p.S434F|KCNMA1_uc001jxl.1_Missense_Mutation_p.S268F|KCNMA1_uc001jxo.2_Missense_Mutation_p.S614F|KCNMA1_uc001jxm.2_Missense_Mutation_p.S614F|KCNMA1_uc001jxq.2_Missense_Mutation_p.S614F	NM_001161352	NP_001154824	Q12791	KCMA1_HUMAN	large conductance calcium-activated potassium	614	Segment S8.|Cytoplasmic (Potential).				cellular potassium ion homeostasis|negative regulation of cell volume|platelet activation|positive regulation of apoptosis|regulation of membrane potential|response to calcium ion|response to carbon monoxide|response to hypoxia|response to osmotic stress|smooth muscle contraction involved in micturition	apical plasma membrane|caveola|integral to membrane|voltage-gated potassium channel complex	actin binding|calcium-activated potassium channel activity|large conductance calcium-activated potassium channel activity|metal ion binding|voltage-gated potassium channel activity			pancreas(2)|ovary(1)	3	all_cancers(46;0.203)|all_epithelial(25;0.00604)|Prostate(51;0.0198)		OV - Ovarian serous cystadenocarcinoma(4;0.0586)|Epithelial(14;0.081)|all cancers(16;0.183)		Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Chlorothiazide(DB00880)|Chlorzoxazone(DB00356)|Cromoglicate(DB01003)|Cyclothiazide(DB00606)|Diazoxide(DB01119)|Enflurane(DB00228)|Hydrochlorothiazide(DB00999)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Quinethazone(DB01325)|Trichlormethiazide(DB01021)	AGTAGGGAAGGACAGACCCAC	0.458													3	19					0	0	0.004672	0	0
DLG5	9231	broad.mit.edu	37	10	79554636	79554636	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:79554636G>A	uc001jzk.2	-	30	5587	c.5517C>T	c.(5515-5517)TTC>TTT	p.F1839F	DLG5_uc001jzi.2_Silent_p.F594F|DLG5_uc001jzj.2_Silent_p.F1254F	NM_004747	NP_004738	Q8TDM6	DLG5_HUMAN	discs large homolog 5	1839	Guanylate kinase-like.				cell-cell adhesion|intracellular signal transduction|negative regulation of cell proliferation|regulation of apoptosis	cell junction|cytoplasm	beta-catenin binding|cytoskeletal protein binding|receptor signaling complex scaffold activity			ovary(5)|breast(3)	8	all_cancers(46;0.0316)|all_epithelial(25;0.00147)|Breast(12;0.0015)|Prostate(51;0.0146)		Epithelial(14;0.00105)|OV - Ovarian serous cystadenocarcinoma(4;0.00151)|all cancers(16;0.00446)			TGTAGTGGATGAAGATGACAA	0.607													8	20					0	0	0.003080	0	0
SFTPA2	729238	broad.mit.edu	37	10	81318678	81318678	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:81318678C>T	uc001kal.3	-	4	353	c.256G>A	c.(256-258)GGA>AGA	p.G86R	SFTPA2_uc001kan.3_Missense_Mutation_p.G86R	NM_006926	NP_008857	Q8IWL1	SFPA2_HUMAN	RecName: Full=Pulmonary surfactant-associated protein A2;          Short=SP-A2;          Short=SP-A;          Short=PSP-A;          Short=PSPA; AltName: Full=Alveolar proteinosis protein; AltName: Full=35 kDa pulmonary surfactant-associated protein; Flags: Precursor;	86	Collagen-like.				cell junction assembly|respiratory gaseous exchange	collagen|extracellular space	sugar binding				0	all_cancers(46;0.197)|Breast(12;0.000326)|Prostate(51;0.00985)|all_epithelial(25;0.0149)		Epithelial(14;0.00957)|all cancers(16;0.0179)|Colorectal(32;0.229)			CCCTTCTCTCCACGCTCTCCA	0.627									Pulmonary_Fibrosis_Idiopathic				37	79					0	0	0.003271	0	0
DYDC2	84332	broad.mit.edu	37	10	82126466	82126466	+	Missense_Mutation	SNP	C	T	T	rs139612342		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:82126466C>T	uc001kca.1	+	5	673	c.293C>T	c.(292-294)TCC>TTC	p.S98F	DYDC2_uc001kbz.1_RNA|DYDC2_uc001kcb.1_Missense_Mutation_p.S98F	NM_032372	NP_115748	Q96IM9	DYDC2_HUMAN	DPY30 domain containing 2	98							protein binding				0			Colorectal(32;0.229)			GAAACTGTTTCCACGAAGAAG	0.413													21	68					0	0	0.012319	0	0
NRG3	10718	broad.mit.edu	37	10	84711289	84711289	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:84711289C>T	uc001kco.2	+	5	1146	c.1119C>T	c.(1117-1119)ATC>ATT	p.I373I	NRG3_uc010qlz.1_Silent_p.I372I|NRG3_uc001kcp.2_Silent_p.I152I|NRG3_uc001kcq.2_Silent_p.I23I|NRG3_uc001kcr.2_Silent_p.I23I	NM_001010848	NP_001010848	P56975	NRG3_HUMAN	neuregulin 3 isoform 1	373	Helical; Note=Internal signal sequence; (Potential).				regulation of cell growth	extracellular region|integral to plasma membrane	growth factor activity|receptor tyrosine kinase binding|transmembrane receptor protein tyrosine kinase activator activity			lung(5)|breast(1)	6				GBM - Glioblastoma multiforme(1;2.5e-18)|all cancers(1;2.85e-09)		GAATTGTCATCGTGGGCATGT	0.353													15	42					0	0	0.004990	0	0
CDHR1	92211	broad.mit.edu	37	10	85973023	85973023	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:85973023C>T	uc001kcv.2	+	16	1959	c.1959C>T	c.(1957-1959)TCC>TCT	p.S653S	CDHR1_uc001kcw.2_Silent_p.S653S|CDHR1_uc009xst.2_Silent_p.S357S|CDHR1_uc001kcx.2_5'UTR	NM_033100	NP_149091	Q96JP9	CDHR1_HUMAN	protocadherin 21 precursor	653	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion		calcium ion binding|receptor activity			ovary(1)	1						GCCTATGGTCCCTAGAGGTGC	0.557													20	85					0	0	0.003330	0	0
LRIT2	340745	broad.mit.edu	37	10	85984737	85984737	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:85984737C>T	uc001kcy.2	-	2	252	c.244G>A	c.(244-246)GAA>AAA	p.E82K	LRIT2_uc010qmc.1_Missense_Mutation_p.E82K	NM_001017924	NP_001017924	A6NDA9	LRIT2_HUMAN	leucine rich repeat containing 22 precursor	82	LRR 1.					integral to membrane				ovary(2)	2						CAGAGGTATTCCAAGGTGCTC	0.473													22	50					0	0	0.010504	0	0
GRID1	2894	broad.mit.edu	37	10	87484213	87484213	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:87484213C>T	uc001kdl.1	-	11	1855	c.1754G>A	c.(1753-1755)AGG>AAG	p.R585K	GRID1_uc009xsu.1_RNA|GRID1_uc010qmf.1_Missense_Mutation_p.R156K	NM_017551	NP_060021	Q9ULK0	GRID1_HUMAN	glutamate receptor, ionotropic, delta 1	585	Cytoplasmic (Potential).					cell junction|integral to membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(5)|upper_aerodigestive_tract(2)|large_intestine(2)|central_nervous_system(1)	10					L-Glutamic Acid(DB00142)	AGCCTGTATCCTGTTCAACAC	0.547										Multiple Myeloma(13;0.14)			14	13					0	0	0.002450	0	0
GRID1	2894	broad.mit.edu	37	10	87487638	87487638	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:87487638C>T	uc001kdl.1	-	10	1608	c.1507G>A	c.(1507-1509)GGG>AGG	p.G503R	GRID1_uc009xsu.1_RNA|GRID1_uc010qmf.1_Missense_Mutation_p.G74R	NM_017551	NP_060021	Q9ULK0	GRID1_HUMAN	glutamate receptor, ionotropic, delta 1	503	Extracellular (Potential).					cell junction|integral to membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(5)|upper_aerodigestive_tract(2)|large_intestine(2)|central_nervous_system(1)	10					L-Glutamic Acid(DB00142)	CCGATCATCCCGTTCCAGGAG	0.537										Multiple Myeloma(13;0.14)			14	43					0	0	0.001855	0	0
LIPF	8513	broad.mit.edu	37	10	90427138	90427138	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:90427138C>T	uc001kfg.1	+	2	250	c.84C>T	c.(82-84)AGC>AGT	p.S28S	LIPF_uc009xtk.2_Silent_p.S28S|LIPF_uc001kfh.1_Silent_p.S38S|LIPF_uc010qmt.1_Silent_p.S38S|LIPF_uc010qmu.1_Silent_p.S28S	NM_004190	NP_004181	P07098	LIPG_HUMAN	lipase, gastric precursor	28					lipid catabolic process|triglyceride metabolic process	extracellular region	lipid binding|triglyceride lipase activity				0		Colorectal(252;0.0161)		Colorectal(12;3.91e-05)|COAD - Colon adenocarcinoma(12;5.43e-05)		ATCCTGGAAGCCCTGAAGTGA	0.338													7	28					0	0	0.003080	0	0
LIPF	8513	broad.mit.edu	37	10	90429616	90429616	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:90429616G>A	uc001kfg.1	+	5	611	c.445G>A	c.(445-447)GAC>AAC	p.D149N	LIPF_uc001kfh.1_Missense_Mutation_p.D126N|LIPF_uc010qmt.1_Missense_Mutation_p.D159N|LIPF_uc010qmu.1_Missense_Mutation_p.D116N	NM_004190	NP_004181	P07098	LIPG_HUMAN	lipase, gastric precursor	149					lipid catabolic process|triglyceride metabolic process	extracellular region	lipid binding|triglyceride lipase activity				0		Colorectal(252;0.0161)		Colorectal(12;3.91e-05)|COAD - Colon adenocarcinoma(12;5.43e-05)		GGCTAAATATGACCTTCCAGC	0.378													18	73					0	0	0.006122	0	0
KIF20B	9585	broad.mit.edu	37	10	91503565	91503565	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:91503565G>A	uc001kgs.1	+	22	3988	c.3916G>A	c.(3916-3918)GTA>ATA	p.V1306I	KIF20B_uc001kgr.1_Missense_Mutation_p.V1266I|KIF20B_uc001kgt.1_Missense_Mutation_p.V517I|KIF20B_uc009xtw.1_RNA	NM_016195	NP_057279	Q96Q89	KI20B_HUMAN	M-phase phosphoprotein 1	1306					cell cycle arrest|cell division|microtubule-based movement|mitosis|regulation of mitosis	centrosome|microtubule|nucleolus|nucleoplasm|spindle	ATP binding|ATPase activity|microtubule motor activity|WW domain binding			ovary(1)|pancreas(1)|skin(1)	3						TATTTTGTAGGTATCTGTAAT	0.289													9	32					0	0	0.006214	0	0
HTR7	3363	broad.mit.edu	37	10	92509065	92509065	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:92509065G>A	uc001kha.2	-	2	1069	c.826C>T	c.(826-828)CCT>TCT	p.P276S	HTR7_uc001kgz.2_Missense_Mutation_p.P276S|HTR7_uc001khb.2_Missense_Mutation_p.P276S	NM_019859	NP_062873	P34969	5HT7R_HUMAN	5-hydroxytryptamine receptor 7 isoform d	276	Cytoplasmic (By similarity).				blood circulation|circadian rhythm	integral to plasma membrane	protein binding|serotonin receptor activity			ovary(1)	1					Eletriptan(DB00216)|Methysergide(DB00247)|Ziprasidone(DB00246)	GGGAAGCCAGGAAACTTGTGT	0.512													7	25					0	0	0.003080	0	0
CPEB3	22849	broad.mit.edu	37	10	93841190	93841190	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:93841190C>T	uc001khw.1	-	9	1929	c.1756G>A	c.(1756-1758)GAG>AAG	p.E586K	CPEB3_uc001khu.1_Missense_Mutation_p.E595K|CPEB3_uc001khv.1_Missense_Mutation_p.E572K|CPEB3_uc010qnn.1_Missense_Mutation_p.E572K	NM_014912	NP_055727	Q8NE35	CPEB3_HUMAN	cytoplasmic polyadenylation element binding	586	RRM 2.						nucleotide binding|RNA binding				0		Colorectal(252;0.0869)				TACTTCAGCTCTGGGTCCGTA	0.478													6	29					0	0	0.001984	0	0
LGI1	9211	broad.mit.edu	37	10	95556849	95556849	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:95556849C>T	uc001kjc.3	+	8	1299	c.963C>T	c.(961-963)ATC>ATT	p.I321I	LGI1_uc010qnv.1_Silent_p.I273I|LGI1_uc001kjd.3_Intron|LGI1_uc009xui.2_RNA|LGI1_uc001kje.2_Intron	NM_005097	NP_005088	O95970	LGI1_HUMAN	leucine-rich, glioma inactivated 1 precursor	321	EAR 3.				axon guidance|cell proliferation|positive regulation of cell growth|positive regulation of synaptic transmission	cell junction|extracellular space|synapse	receptor binding			ovary(2)|central_nervous_system(1)|skin(1)	4		Colorectal(252;0.124)				TCATAAAAATCCAGGATATTG	0.363													5	32					0	0	0.000602	0	0
PLCE1	51196	broad.mit.edu	37	10	95791266	95791266	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:95791266G>A	uc001kjk.2	+	2	1097	c.463G>A	c.(463-465)GAA>AAA	p.E155K	PLCE1_uc010qnx.1_Missense_Mutation_p.E155K	NM_016341	NP_057425	Q9P212	PLCE1_HUMAN	phospholipase C, epsilon 1 isoform 1	155					activation of MAPK activity|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|calcium-mediated signaling|cell proliferation|cytoskeleton organization|diacylglycerol biosynthetic process|elevation of cytosolic calcium ion concentration|epidermal growth factor receptor signaling pathway|glomerulus development|heart development|lipid catabolic process|Ras protein signal transduction|regulation of cell growth|regulation of G-protein coupled receptor protein signaling pathway|regulation of Ras protein signal transduction|regulation of smooth muscle contraction	cytosol|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|phosphatidylinositol phospholipase C activity|Ras GTPase binding|receptor signaling protein activity			ovary(2)|skin(1)	3		Colorectal(252;0.0458)				AATTCAACTGGAACTAGACAG	0.433													21	42					0	0	0.012319	0	0
PLCE1	51196	broad.mit.edu	37	10	95892155	95892155	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:95892155G>A	uc001kjk.2	+	3	2065	c.1431G>A	c.(1429-1431)TTG>TTA	p.L477L	PLCE1_uc010qnx.1_Silent_p.L477L|PLCE1_uc001kjm.2_Silent_p.L169L	NM_016341	NP_057425	Q9P212	PLCE1_HUMAN	phospholipase C, epsilon 1 isoform 1	477					activation of MAPK activity|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|calcium-mediated signaling|cell proliferation|cytoskeleton organization|diacylglycerol biosynthetic process|elevation of cytosolic calcium ion concentration|epidermal growth factor receptor signaling pathway|glomerulus development|heart development|lipid catabolic process|Ras protein signal transduction|regulation of cell growth|regulation of G-protein coupled receptor protein signaling pathway|regulation of Ras protein signal transduction|regulation of smooth muscle contraction	cytosol|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|phosphatidylinositol phospholipase C activity|Ras GTPase binding|receptor signaling protein activity			ovary(2)|skin(1)	3		Colorectal(252;0.0458)				CCACGTCTTTGGGAGCAAGAA	0.453													9	47					0	0	0.006214	0	0
PLCE1	51196	broad.mit.edu	37	10	96025694	96025694	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:96025694C>T	uc001kjk.2	+	16	4894	c.4260C>T	c.(4258-4260)TCC>TCT	p.S1420S	PLCE1_uc010qnx.1_Silent_p.S1404S|PLCE1_uc001kjm.2_Silent_p.S1112S	NM_016341	NP_057425	Q9P212	PLCE1_HUMAN	phospholipase C, epsilon 1 isoform 1	1420	PI-PLC X-box.				activation of MAPK activity|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|calcium-mediated signaling|cell proliferation|cytoskeleton organization|diacylglycerol biosynthetic process|elevation of cytosolic calcium ion concentration|epidermal growth factor receptor signaling pathway|glomerulus development|heart development|lipid catabolic process|Ras protein signal transduction|regulation of cell growth|regulation of G-protein coupled receptor protein signaling pathway|regulation of Ras protein signal transduction|regulation of smooth muscle contraction	cytosol|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|phosphatidylinositol phospholipase C activity|Ras GTPase binding|receptor signaling protein activity			ovary(2)|skin(1)	3		Colorectal(252;0.0458)				AAGGAGAATCCTCGGTAGAAC	0.428													14	35					0	0	0.007413	0	0
CYP2C18	1562	broad.mit.edu	37	10	96484114	96484114	+	Nonsense_Mutation	SNP	G	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:96484114G>T	uc001kjv.3	+	7	1299	c.973G>T	c.(973-975)GAA>TAA	p.E325*	CYP2C18_uc001kjw.3_Nonsense_Mutation_p.E266*|CYP2C19_uc009xus.1_Intron|CYP2C19_uc010qny.1_5'UTR	NM_000772	NP_000763	P33260	CP2CI_HUMAN	cytochrome P450 family 2 subfamily C polypeptide	325					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(3)|lung(1)|skin(1)	5		Colorectal(252;0.09)		all cancers(201;2.8e-06)|KIRC - Kidney renal clear cell carcinoma(50;0.0646)|Kidney(138;0.0805)		TAAAGTCCAGGAAGAGATTGA	0.453													10	46					2.80697e-09	3.01873e-09	0.010729	1	0
CYP2C19	1557	broad.mit.edu	37	10	96522541	96522541	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:96522541G>A	uc010qnz.1	+	1	79	c.79G>A	c.(79-81)GGA>AGA	p.G27R	CYP2C19_uc009xus.1_Intron|CYP2C19_uc010qny.1_Intron	NM_000769	NP_000760	P33261	CP2CJ_HUMAN	cytochrome P450, family 2, subfamily C,	27					exogenous drug catabolic process|heterocycle metabolic process|monoterpenoid metabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|electron carrier activity|enzyme binding|heme binding|oxygen binding|steroid hydroxylase activity			ovary(4)|central_nervous_system(1)|skin(1)	6		Colorectal(252;0.09)		all cancers(201;6.02e-07)|KIRC - Kidney renal clear cell carcinoma(50;0.0672)|Kidney(138;0.0838)	Adinazolam(DB00546)|Aminophenazone(DB01424)|Amitriptyline(DB00321)|Amoxicillin(DB01060)|Arformoterol(DB01274)|Bortezomib(DB00188)|Carisoprodol(DB00395)|Chlorzoxazone(DB00356)|Cilostazol(DB01166)|Citalopram(DB00215)|Clarithromycin(DB01211)|Clobazam(DB00349)|Desipramine(DB01151)|Desloratadine(DB00967)|Diclofenac(DB00586)|Diltiazem(DB00343)|Efavirenz(DB00625)|Esomeprazole(DB00736)|Famotidine(DB00927)|Felbamate(DB00949)|Finasteride(DB01216)|Flunitrazepam(DB01544)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Fosphenytoin(DB01320)|Guanfacine(DB01018)|Imipramine(DB00458)|Indomethacin(DB00328)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Lapatinib(DB01259)|Loratadine(DB00455)|Melatonin(DB01065)|Mephenytoin(DB00532)|Methadone(DB00333)|Methylphenobarbital(DB00849)|Moclobemide(DB01171)|Modafinil(DB00745)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Nilutamide(DB00665)|Norgestrel(DB00506)|Omeprazole(DB00338)|Oxcarbazepine(DB00776)|Pantoprazole(DB00213)|Pentamidine(DB00738)|Phenobarbital(DB01174)|Phenytoin(DB00252)|Primidone(DB00794)|Progesterone(DB00396)|Proguanil(DB01131)|Promazine(DB00420)|Quinidine(DB00908)|Rabeprazole(DB01129)|Ranitidine(DB00863)|Ritonavir(DB00503)|Selegiline(DB01037)|Sertraline(DB01104)|Temazepam(DB00231)|Teniposide(DB00444)|Terfenadine(DB00342)|Thalidomide(DB01041)|Thioridazine(DB00679)|Ticlopidine(DB00208)|Tolbutamide(DB01124)|Topiramate(DB00273)|Tranylcypromine(DB00752)|Troglitazone(DB00197)|Troleandomycin(DB01361)|Voriconazole(DB00582)	CTCTGGGAGAGGAAAACTCCC	0.443													21	50					0	0	0.008871	0	0
CYP2C19	1557	broad.mit.edu	37	10	96522549	96522549	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:96522549C>T	uc010qnz.1	+	1	87	c.87C>T	c.(85-87)CTC>CTT	p.L29L	CYP2C19_uc009xus.1_Intron|CYP2C19_uc010qny.1_Intron	NM_000769	NP_000760	P33261	CP2CJ_HUMAN	cytochrome P450, family 2, subfamily C,	29					exogenous drug catabolic process|heterocycle metabolic process|monoterpenoid metabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|electron carrier activity|enzyme binding|heme binding|oxygen binding|steroid hydroxylase activity			ovary(4)|central_nervous_system(1)|skin(1)	6		Colorectal(252;0.09)		all cancers(201;6.02e-07)|KIRC - Kidney renal clear cell carcinoma(50;0.0672)|Kidney(138;0.0838)	Adinazolam(DB00546)|Aminophenazone(DB01424)|Amitriptyline(DB00321)|Amoxicillin(DB01060)|Arformoterol(DB01274)|Bortezomib(DB00188)|Carisoprodol(DB00395)|Chlorzoxazone(DB00356)|Cilostazol(DB01166)|Citalopram(DB00215)|Clarithromycin(DB01211)|Clobazam(DB00349)|Desipramine(DB01151)|Desloratadine(DB00967)|Diclofenac(DB00586)|Diltiazem(DB00343)|Efavirenz(DB00625)|Esomeprazole(DB00736)|Famotidine(DB00927)|Felbamate(DB00949)|Finasteride(DB01216)|Flunitrazepam(DB01544)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Fosphenytoin(DB01320)|Guanfacine(DB01018)|Imipramine(DB00458)|Indomethacin(DB00328)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Lapatinib(DB01259)|Loratadine(DB00455)|Melatonin(DB01065)|Mephenytoin(DB00532)|Methadone(DB00333)|Methylphenobarbital(DB00849)|Moclobemide(DB01171)|Modafinil(DB00745)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Nilutamide(DB00665)|Norgestrel(DB00506)|Omeprazole(DB00338)|Oxcarbazepine(DB00776)|Pantoprazole(DB00213)|Pentamidine(DB00738)|Phenobarbital(DB01174)|Phenytoin(DB00252)|Primidone(DB00794)|Progesterone(DB00396)|Proguanil(DB01131)|Promazine(DB00420)|Quinidine(DB00908)|Rabeprazole(DB01129)|Ranitidine(DB00863)|Ritonavir(DB00503)|Selegiline(DB01037)|Sertraline(DB01104)|Temazepam(DB00231)|Teniposide(DB00444)|Terfenadine(DB00342)|Thalidomide(DB01041)|Thioridazine(DB00679)|Ticlopidine(DB00208)|Tolbutamide(DB01124)|Topiramate(DB00273)|Tranylcypromine(DB00752)|Troglitazone(DB00197)|Troleandomycin(DB01361)|Voriconazole(DB00582)	GAGGAAAACTCCCTCCTGGCC	0.453													18	51					0	0	0.004990	0	0
CYP2C19	1557	broad.mit.edu	37	10	96580331	96580331	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:96580331G>A	uc010qnz.1	+	6	898	c.898G>A	c.(898-900)GAG>AAG	p.E300K	CYP2C19_uc010qny.1_Missense_Mutation_p.E278K	NM_000769	NP_000760	P33261	CP2CJ_HUMAN	cytochrome P450, family 2, subfamily C,	300					exogenous drug catabolic process|heterocycle metabolic process|monoterpenoid metabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|electron carrier activity|enzyme binding|heme binding|oxygen binding|steroid hydroxylase activity			ovary(4)|central_nervous_system(1)|skin(1)	6		Colorectal(252;0.09)		all cancers(201;6.02e-07)|KIRC - Kidney renal clear cell carcinoma(50;0.0672)|Kidney(138;0.0838)	Adinazolam(DB00546)|Aminophenazone(DB01424)|Amitriptyline(DB00321)|Amoxicillin(DB01060)|Arformoterol(DB01274)|Bortezomib(DB00188)|Carisoprodol(DB00395)|Chlorzoxazone(DB00356)|Cilostazol(DB01166)|Citalopram(DB00215)|Clarithromycin(DB01211)|Clobazam(DB00349)|Desipramine(DB01151)|Desloratadine(DB00967)|Diclofenac(DB00586)|Diltiazem(DB00343)|Efavirenz(DB00625)|Esomeprazole(DB00736)|Famotidine(DB00927)|Felbamate(DB00949)|Finasteride(DB01216)|Flunitrazepam(DB01544)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Fosphenytoin(DB01320)|Guanfacine(DB01018)|Imipramine(DB00458)|Indomethacin(DB00328)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Lapatinib(DB01259)|Loratadine(DB00455)|Melatonin(DB01065)|Mephenytoin(DB00532)|Methadone(DB00333)|Methylphenobarbital(DB00849)|Moclobemide(DB01171)|Modafinil(DB00745)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Nilutamide(DB00665)|Norgestrel(DB00506)|Omeprazole(DB00338)|Oxcarbazepine(DB00776)|Pantoprazole(DB00213)|Pentamidine(DB00738)|Phenobarbital(DB01174)|Phenytoin(DB00252)|Primidone(DB00794)|Progesterone(DB00396)|Proguanil(DB01131)|Promazine(DB00420)|Quinidine(DB00908)|Rabeprazole(DB01129)|Ranitidine(DB00863)|Ritonavir(DB00503)|Selegiline(DB01037)|Sertraline(DB01104)|Temazepam(DB00231)|Teniposide(DB00444)|Terfenadine(DB00342)|Thalidomide(DB01041)|Thioridazine(DB00679)|Ticlopidine(DB00208)|Tolbutamide(DB01124)|Topiramate(DB00273)|Tranylcypromine(DB00752)|Troglitazone(DB00197)|Troleandomycin(DB01361)|Voriconazole(DB00582)	AGCTGGGACAGAGACAACAAG	0.428													22	46					0	0	0.012319	0	0
C10orf129	142827	broad.mit.edu	37	10	96967012	96967012	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:96967012C>T	uc001kke.2	+	4	576	c.451C>T	c.(451-453)CGC>TGC	p.R151C	C10orf129_uc009xuu.1_Missense_Mutation_p.R61C	NM_207321	NP_997204	Q6P461	ACSM6_HUMAN	acyl-coenzyme A synthetase ACSM6, mitochondrial	151					fatty acid metabolic process	mitochondrion	ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding				0		Colorectal(252;0.083)		Epithelial(162;1.64e-06)|all cancers(201;3.71e-05)		CAAGAAAATTCGCTATCAATT	0.458													7	27					0	0	0.004482	0	0
ALDH18A1	5832	broad.mit.edu	37	10	97371130	97371130	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:97371130G>A	uc001kkz.2	-	16	2235	c.1993C>T	c.(1993-1995)CGA>TGA	p.R665*	ALDH18A1_uc001kky.2_Nonsense_Mutation_p.R663*|ALDH18A1_uc010qog.1_Nonsense_Mutation_p.R554*|ALDH18A1_uc010qoh.1_Nonsense_Mutation_p.R453*	NM_002860	NP_002851	P54886	P5CS_HUMAN	pyrroline-5-carboxylate synthetase isoform 1	665	Gamma-glutamyl phosphate reductase.				proline biosynthetic process	mitochondrial inner membrane	ATP binding|glutamate 5-kinase activity|glutamate-5-semialdehyde dehydrogenase activity			pancreas(1)|central_nervous_system(1)|skin(1)	3		Colorectal(252;0.0402)		Epithelial(162;9.1e-07)|all cancers(201;2.55e-05)	L-Glutamic Acid(DB00142)	TACTCAGTTCGGAGTGACTTC	0.502													33	111					0	0	0.005524	0	0
TCTN3	26123	broad.mit.edu	37	10	97423933	97423933	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:97423933G>A	uc001klb.3	-	14	1959	c.1715C>T	c.(1714-1716)CCC>CTC	p.P572L	TCTN3_uc001kla.3_Missense_Mutation_p.P416L|TCTN3_uc010qoi.1_Missense_Mutation_p.P424L	NM_015631	NP_056446	Q6NUS6	TECT3_HUMAN	tectonic 3 isoform a precursor	572	Extracellular (Potential).				apoptosis	integral to membrane					0		Colorectal(252;0.0815)		Epithelial(162;1.69e-07)|all cancers(201;5.63e-06)		CACTTTGAAGGGAAAGAAGTC	0.468													52	153					0	0	0.014410	0	0
BLNK	29760	broad.mit.edu	37	10	97976457	97976457	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:97976457C>T	uc001kls.3	-	7	737	c.559G>A	c.(559-561)GAA>AAA	p.E187K	BLNK_uc001kme.3_Missense_Mutation_p.E105K|BLNK_uc001klt.3_Missense_Mutation_p.E101K|BLNK_uc009xvc.2_RNA|BLNK_uc001klu.3_Missense_Mutation_p.E105K|BLNK_uc001klv.3_Intron|BLNK_uc001klw.3_RNA|BLNK_uc001klx.3_Missense_Mutation_p.E187K|BLNK_uc001kly.3_Missense_Mutation_p.E187K|BLNK_uc001klz.3_RNA|BLNK_uc001kma.3_Missense_Mutation_p.E187K|BLNK_uc001kmb.3_5'UTR|BLNK_uc001kmc.3_RNA|BLNK_uc001kmd.3_Missense_Mutation_p.E105K|BLNK_uc009xvd.2_RNA	NM_013314	NP_037446	Q8WV28	BLNK_HUMAN	B-cell linker isoform 1	187	Pro-rich.				B cell differentiation|humoral immune response|inflammatory response|intracellular signal transduction	cytoplasm|plasma membrane	SH3/SH2 adaptor activity|transmembrane receptor protein tyrosine kinase adaptor activity			skin(2)	2		Colorectal(252;0.083)		Epithelial(162;7.89e-08)|all cancers(201;2.27e-06)		ATATAGTTTTCATCATTATCT	0.398													7	15					0	0	0.003080	0	0
TLL2	7093	broad.mit.edu	37	10	98145829	98145829	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:98145829C>T	uc001kml.1	-	15	2222	c.1996G>A	c.(1996-1998)GAA>AAA	p.E666K		NM_012465	NP_036597	Q9Y6L7	TLL2_HUMAN	tolloid-like 2 precursor	666	CUB 3.				cell differentiation|multicellular organismal development|proteolysis	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3		Colorectal(252;0.0846)		Epithelial(162;1.51e-07)|all cancers(201;7.59e-06)		CCTTCCAGTTCAAACACTTCA	0.547													4	18					0	0	0.001168	0	0
TLL2	7093	broad.mit.edu	37	10	98182396	98182396	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:98182396C>T	uc001kml.1	-	6	953	c.727G>A	c.(727-729)GAG>AAG	p.E243K	TLL2_uc009xvf.1_Missense_Mutation_p.E191K	NM_012465	NP_036597	Q9Y6L7	TLL2_HUMAN	tolloid-like 2 precursor	243	Metalloprotease (By similarity).	By similarity.			cell differentiation|multicellular organismal development|proteolysis	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3		Colorectal(252;0.0846)		Epithelial(162;1.51e-07)|all cancers(201;7.59e-06)		TGGCCCAGCTCGTGAGCCACA	0.552													4	28					0	0	0.009096	0	0
PIK3AP1	118788	broad.mit.edu	37	10	98376449	98376449	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:98376449C>T	uc001kmq.2	-	13	2089	c.1961G>A	c.(1960-1962)AGA>AAA	p.R654K	PIK3AP1_uc001kmo.2_Missense_Mutation_p.R253K|PIK3AP1_uc001kmp.2_Missense_Mutation_p.R476K	NM_152309	NP_689522	Q6ZUJ8	BCAP_HUMAN	phosphoinositide-3-kinase adaptor protein 1	654	Potential.					cytoplasm|plasma membrane				upper_aerodigestive_tract(3)|ovary(1)|skin(1)	5		Colorectal(252;0.0442)		Epithelial(162;6.29e-08)|all cancers(201;3.18e-06)		GATGCTGTCTCTTAGCCGTTT	0.413													10	40					0	0	0.013537	0	0
SLIT1	6585	broad.mit.edu	37	10	98764484	98764484	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:98764484C>T	uc001kmw.2	-	33	3928	c.3676G>A	c.(3676-3678)GAC>AAC	p.D1226N		NM_003061	NP_003052	O75093	SLIT1_HUMAN	slit homolog 1 precursor	1226	Laminin G-like.				axon extension involved in axon guidance|forebrain morphogenesis|motor axon guidance|negative chemotaxis|negative regulation of synaptogenesis	cytoplasm|extracellular space	calcium ion binding|Roundabout binding			ovary(4)	4		Colorectal(252;0.162)		Epithelial(162;2.02e-08)|all cancers(201;1.5e-06)		CTGCCTGGGTCGTAGCTGACA	0.612													9	28					0	0	0.004482	0	0
ARHGAP19	84986	broad.mit.edu	37	10	98995003	98995003	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:98995003G>A	uc001knb.2	-	9	1284	c.1255C>T	c.(1255-1257)CGT>TGT	p.R419C	ARHGAP19_uc001kmy.2_RNA|ARHGAP19_uc001kna.2_Missense_Mutation_p.R410C|ARHGAP19_uc009xvi.2_RNA|ARHGAP19_uc009xvj.2_Missense_Mutation_p.R390C|ARHGAP19_uc009xvk.2_Missense_Mutation_p.R213C	NM_032900	NP_116289	Q14CB8	RHG19_HUMAN	Rho GTPase activating protein 19	419					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|nucleus	GTPase activator activity				0		Colorectal(252;0.0854)		Epithelial(162;7.65e-09)|all cancers(201;4.49e-07)		GAGCGCGAACGAGCCCTCTTT	0.398													26	104					0	0	0.006320	0	0
ARHGAP19	84986	broad.mit.edu	37	10	99023382	99023382	+	Missense_Mutation	SNP	C	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:99023382C>A	uc001knb.2	-	4	437	c.408G>T	c.(406-408)TTG>TTT	p.L136F	ARHGAP19_uc001kmy.2_RNA|ARHGAP19_uc001kna.2_Missense_Mutation_p.L127F|ARHGAP19_uc009xvi.2_RNA|ARHGAP19_uc009xvj.2_Missense_Mutation_p.L136F|ARHGAP19_uc009xvk.2_Intron	NM_032900	NP_116289	Q14CB8	RHG19_HUMAN	Rho GTPase activating protein 19	136	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|nucleus	GTPase activator activity				0		Colorectal(252;0.0854)		Epithelial(162;7.65e-09)|all cancers(201;4.49e-07)		CCTCTACTCGCAAGTCTGTTT	0.378													8	26					0.000157383	0.000168092	0.003080	1	0
HPS1	3257	broad.mit.edu	37	10	100183637	100183637	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:100183637G>A	uc010qpf.1	-	15	1651	c.1405C>T	c.(1405-1407)CAG>TAG	p.Q469*	HPS1_uc001kpi.1_Nonsense_Mutation_p.Q469*|HPS1_uc001kpj.1_Nonsense_Mutation_p.Q376*|HPS1_uc001kpk.1_Nonsense_Mutation_p.Q293*|HPS1_uc010qpg.1_Nonsense_Mutation_p.Q89*|HPS1_uc009xwb.2_RNA	NM_000195	NP_000186	Q92902	HPS1_HUMAN	Hermansky-Pudlak syndrome 1 protein isoform a	469					lysosome organization|response to stimulus|visual perception	cytoplasmic membrane-bounded vesicle|integral to plasma membrane|lysosome|membrane fraction|soluble fraction	protein dimerization activity			skin(1)	1		Colorectal(252;0.234)		Epithelial(162;3.87e-12)|all cancers(201;5.63e-10)		CCACATGCCTGGAGCAGCCTG	0.642									Hermansky-Pudlak_syndrome				5	24					0	0	0.001168	0	0
CPN1	1369	broad.mit.edu	37	10	101816837	101816837	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:101816837G>A	uc001kql.2	-	6	1204	c.944C>T	c.(943-945)CCC>CTC	p.P315L		NM_001308	NP_001299	P15169	CBPN_HUMAN	carboxypeptidase N, polypeptide 1 precursor	315	Catalytic.				proteolysis	extracellular space	metallocarboxypeptidase activity|zinc ion binding			central_nervous_system(3)|pancreas(1)	4		Colorectal(252;0.234)		Epithelial(162;4.77e-10)|all cancers(201;3.82e-08)		CTCTTCGGGGGGAAACTTGTC	0.468													42	127					0	0	0.014410	0	0
CPN1	1369	broad.mit.edu	37	10	101816839	101816839	+	Missense_Mutation	SNP	A	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:101816839A>T	uc001kql.2	-	6	1202	c.942T>A	c.(940-942)TTT>TTA	p.F314L		NM_001308	NP_001299	P15169	CBPN_HUMAN	carboxypeptidase N, polypeptide 1 precursor	314	Catalytic.				proteolysis	extracellular space	metallocarboxypeptidase activity|zinc ion binding			central_nervous_system(3)|pancreas(1)	4		Colorectal(252;0.234)		Epithelial(162;4.77e-10)|all cancers(201;3.82e-08)		CTTCGGGGGGAAACTTGTCGC	0.473													41	130					0	0	0.014410	0	0
SEC31B	25956	broad.mit.edu	37	10	102257790	102257790	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:102257790G>A	uc001krc.1	-	15	1961	c.1859C>T	c.(1858-1860)TCC>TTC	p.S620F	SEC31B_uc010qpo.1_Missense_Mutation_p.S619F|SEC31B_uc001krd.1_Missense_Mutation_p.S157F|SEC31B_uc001krf.1_Missense_Mutation_p.S157F|SEC31B_uc001kre.1_Missense_Mutation_p.S157F|SEC31B_uc001krg.1_Missense_Mutation_p.S189F	NM_015490	NP_056305	Q9NQW1	SC31B_HUMAN	SEC31 homolog B	620					protein transport|vesicle-mediated transport	endoplasmic reticulum membrane|ER to Golgi transport vesicle membrane				ovary(1)	1		Colorectal(252;0.117)		Epithelial(162;2.36e-10)|all cancers(201;2.09e-08)		AGTTACCGAGGAGATTTTGGT	0.527													17	29					0	0	0.004990	0	0
PAX2	5076	broad.mit.edu	37	10	102566342	102566342	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:102566342G>A	uc001krk.3	+	7	1391	c.841G>A	c.(841-843)GAG>AAG	p.E281K	PAX2_uc001krl.3_Missense_Mutation_p.E258K|PAX2_uc001krm.3_Missense_Mutation_p.E281K|PAX2_uc001kro.3_Missense_Mutation_p.E258K|PAX2_uc001krn.3_Missense_Mutation_p.E258K|PAX2_uc010qps.1_Missense_Mutation_p.E257K|PAX2_uc001krp.1_Missense_Mutation_p.E254K	NM_003990	NP_003981	Q02962	PAX2_HUMAN	paired box protein 2 isoform e	281					anti-apoptosis|axonogenesis|brain morphogenesis|branching involved in ureteric bud morphogenesis|cell fate determination|cellular response to glucose stimulus|cellular response to hydrogen peroxide|cellular response to retinoic acid|cochlea development|glial cell differentiation|inner ear morphogenesis|mesenchymal to epithelial transition involved in metanephros morphogenesis|mesodermal cell fate specification|mesonephros development|metanephric collecting duct development|metanephric distal convoluted tubule development|metanephric mesenchymal cell differentiation|metanephric nephron tubule formation|negative regulation of caspase activity|negative regulation of cytolysis|negative regulation of mesenchymal stem cell apoptosis involved in metanephric nephron morphogenesis|negative regulation of reactive oxygen species metabolic process|negative regulation of transcription, DNA-dependent|nephric duct formation|neural tube closure|optic chiasma development|optic cup morphogenesis involved in camera-type eye development|optic nerve structural organization|positive regulation of branching involved in ureteric bud morphogenesis|positive regulation of epithelial cell proliferation|positive regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis|positive regulation of metanephric DCT cell differentiation|positive regulation of metanephric glomerulus development|positive regulation of optic nerve formation|positive regulation of transcription from RNA polymerase II promoter|pronephric field specification|protein kinase B signaling cascade|reactive oxygen species metabolic process|regulation of metanephric nephron tubule epithelial cell differentiation|regulation of metanephros size|retinal pigment epithelium development|stem cell differentiation|transcription from RNA polymerase II promoter|ureter maturation|vestibulocochlear nerve formation|visual perception	centriolar satellite|nucleus|protein complex|protein-DNA complex	core promoter proximal region sequence-specific DNA binding|superoxide-generating NADPH oxidase activity				0		Colorectal(252;0.234)		Epithelial(162;1.32e-08)|all cancers(201;7.32e-07)		CCAGGCATCAGAGCACATCAA	0.532													26	108					0	0	0.006320	0	0
C10orf2	56652	broad.mit.edu	37	10	102753166	102753166	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:102753166C>T	uc001ksf.2	+	5	2629	c.1954C>T	c.(1954-1956)CCC>TCC	p.P652S	C10orf2_uc001ksg.2_3'UTR|C10orf2_uc001ksi.2_3'UTR|C10orf2_uc010qpv.1_Missense_Mutation_p.P198S|C10orf2_uc001ksh.2_RNA	NM_021830	NP_068602	Q96RR1	PEO1_HUMAN	twinkle isoform A	652					cell death|mitochondrial DNA replication|protein hexamerization|protein homooligomerization|transcription from mitochondrial promoter	mitochondrial nucleoid	5'-3' DNA helicase activity|ATP binding|protease binding|single-stranded DNA binding			ovary(1)	1		Colorectal(252;0.122)|all_hematologic(284;0.152)		Epithelial(162;7.18e-11)|all cancers(201;8.75e-09)|BRCA - Breast invasive adenocarcinoma(275;0.224)		GGCCAAAAAGCCCTCTTCTGG	0.542													14	45					0	0	0.002450	0	0
FBXW4	6468	broad.mit.edu	37	10	103384520	103384520	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:103384520C>T	uc001kto.2	-	6	1164	c.818G>A	c.(817-819)AGA>AAA	p.R273K		NM_022039	NP_071322	P57775	FBXW4_HUMAN	F-box and WD repeat domain containing 4	273					ubiquitin-dependent protein catabolic process|Wnt receptor signaling pathway	ubiquitin ligase complex				skin(1)	1		Colorectal(252;0.123)		Epithelial(162;4.35e-08)|all cancers(201;1.92e-06)		GTCCCAGATTCTCAGGGGTGA	0.542													7	31					0	0	0.001984	0	0
FBXW4	6468	broad.mit.edu	37	10	103433355	103433355	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:103433355G>A	uc001kto.2	-	3	778	c.432C>T	c.(430-432)TTC>TTT	p.F144F		NM_022039	NP_071322	P57775	FBXW4_HUMAN	F-box and WD repeat domain containing 4	144					ubiquitin-dependent protein catabolic process|Wnt receptor signaling pathway	ubiquitin ligase complex				skin(1)	1		Colorectal(252;0.123)		Epithelial(162;4.35e-08)|all cancers(201;1.92e-06)		CATCTGGACGGAACTGGTAGG	0.483													7	41					0	0	0.001984	0	0
PPRC1	23082	broad.mit.edu	37	10	103900612	103900612	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:103900612C>T	uc001kum.2	+	5	2386	c.2347C>T	c.(2347-2349)CCA>TCA	p.P783S	PPRC1_uc001kun.2_Missense_Mutation_p.P663S|PPRC1_uc010qqj.1_Missense_Mutation_p.P783S|PPRC1_uc009xxa.2_RNA	NM_015062	NP_055877	Q5VV67	PPRC1_HUMAN	peroxisome proliferator-activated receptor	783	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleotide binding|RNA binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Colorectal(252;0.122)		Epithelial(162;4.97e-08)|all cancers(201;8.99e-07)		GCCTAGCCTTCCAGAGACTCC	0.577													7	34					0	0	0.003080	0	0
PITX3	5309	broad.mit.edu	37	10	103991417	103991417	+	Missense_Mutation	SNP	C	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:103991417C>G	uc001kuu.1	-	3	403	c.249G>C	c.(247-249)AGG>AGC	p.R83S		NM_005029	NP_005020	O75364	PITX3_HUMAN	paired-like homeodomain 3	83	Homeobox.				dopaminergic neuron differentiation|lens morphogenesis in camera-type eye|midbrain development|positive regulation of transcription, DNA-dependent	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0		Colorectal(252;0.00957)		Epithelial(162;4.97e-08)|all cancers(201;8.99e-07)		GGTAGCGGTTCCTCTGGAAGG	0.662													2	5					0	0	0.004672	0	0
PSD	5662	broad.mit.edu	37	10	104176737	104176737	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:104176737C>T	uc001kvg.1	-	2	586	c.59G>A	c.(58-60)CGA>CAA	p.R20Q	PSD_uc001kvh.1_Intron|PSD_uc009xxd.1_Missense_Mutation_p.R20Q|PSD_uc001kvi.1_Missense_Mutation_p.R20Q|FBXL15_uc001kvj.1_5'Flank|FBXL15_uc001kvk.2_5'Flank	NM_002779	NP_002770	A5PKW4	PSD1_HUMAN	pleckstrin and Sec7 domain containing	20	Pro-rich.				regulation of ARF protein signal transduction	cytoplasm|plasma membrane|ruffle	ARF guanyl-nucleotide exchange factor activity|signal transducer activity			breast(2)|urinary_tract(1)	3				Epithelial(162;1.27e-08)|all cancers(201;2.85e-07)		GCGTGGGCATCGTGGTGGGGA	0.711													5	8					0	0	0.000602	0	0
ACTR1A	10121	broad.mit.edu	37	10	104245387	104245387	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:104245387G>A	uc001kvv.2	-	5	527	c.419C>T	c.(418-420)TCC>TTC	p.S140F	ACTR1A_uc010qqn.1_Missense_Mutation_p.S66F|ACTR1A_uc010qqo.1_Missense_Mutation_p.S93F	NM_005736	NP_005727	P61163	ACTZ_HUMAN	ARP1 actin-related protein 1 homolog A,	140					G2/M transition of mitotic cell cycle|vesicle-mediated transport	centrosome|cytosol|dynactin complex	ATP binding			central_nervous_system(1)	1		Colorectal(252;0.122)		Epithelial(162;5.34e-09)|all cancers(201;1.43e-07)|BRCA - Breast invasive adenocarcinoma(275;0.222)		AGCTTGCATGGAGATGAAAAG	0.567													17	40					0	0	0.004990	0	0
SUFU	51684	broad.mit.edu	37	10	104309776	104309776	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:104309776C>T	uc001kvy.1	+	3	513	c.367C>T	c.(367-369)CGT>TGT	p.R123C	SUFU_uc001kvw.1_Missense_Mutation_p.R123C|SUFU_uc001kvx.2_Missense_Mutation_p.R123C	NM_016169	NP_057253	Q9UMX1	SUFU_HUMAN	suppressor of fused	123					negative regulation of transcription from RNA polymerase II promoter|proteolysis|skeletal system development	cytoplasm|nucleus	identical protein binding|protein binding|signal transducer activity|transcription corepressor activity|transcription factor binding			central_nervous_system(4)|skin(2)|breast(1)	7		Colorectal(252;0.207)		Epithelial(162;1.36e-08)|all cancers(201;3.81e-07)|BRCA - Breast invasive adenocarcinoma(275;0.242)		GTTGACCTTTCGTCTGAAGAG	0.478			D|F|S		medulloblastoma	medulloblastoma			Medulloblastoma_associated_with_Germline_SUFU_Mutation				13	36					0	0	0.004007	0	0
TRIM8	81603	broad.mit.edu	37	10	104416605	104416605	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:104416605C>T	uc001kvz.2	+	6	1273	c.1150C>T	c.(1150-1152)CCA>TCA	p.P384S		NM_030912	NP_112174	Q9BZR9	TRIM8_HUMAN	tripartite motif-containing 8	384						cytoplasm|PML body	ligase activity|protein homodimerization activity|zinc ion binding			ovary(1)	1		Colorectal(252;0.122)		Epithelial(162;3.93e-09)|all cancers(201;1.02e-07)|BRCA - Breast invasive adenocarcinoma(275;0.215)		AACGGCCTTCCCAGAGGCCAG	0.697													26	91					0	0	0.007291	0	0
CNNM2	54805	broad.mit.edu	37	10	104679674	104679674	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:104679674C>T	uc001kwm.2	+	1	1561	c.1437C>T	c.(1435-1437)ACC>ACT	p.T479T	CNNM2_uc001kwn.2_Silent_p.T479T|CNNM2_uc001kwl.2_Silent_p.T479T	NM_017649	NP_060119	Q9H8M5	CNNM2_HUMAN	cyclin M2 isoform 1	479	CBS 1.				ion transport	integral to membrane				ovary(1)|central_nervous_system(1)	2		Colorectal(252;0.103)|all_hematologic(284;0.152)|Breast(234;0.198)		Epithelial(162;7.89e-09)|all cancers(201;1.82e-07)|BRCA - Breast invasive adenocarcinoma(275;0.215)		GCGGCTACACCCGCATTCCAG	0.552													10	27					0	0	0.008291	0	0
LOC729020	729020	broad.mit.edu	37	10	105005843	105005843	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:105005843G>A	uc009xxi.2	+	1	200	c.90G>A	c.(88-90)GGG>GGA	p.G30G	uc001kwr.2_Intron	NM_001143909	NP_001137381	Q2QD12	Q2QD12_HUMAN	rcRPE protein	30					carbohydrate metabolic process		ribulose-phosphate 3-epimerase activity				0						TAGACTCTGGGGCCGATTATC	0.557													15	43					0	0	0.003163	0	0
PDCD11	22984	broad.mit.edu	37	10	105162877	105162877	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:105162877C>T	uc001kwy.1	+	4	324	c.237C>T	c.(235-237)TCC>TCT	p.S79S		NM_014976	NP_055791	Q14690	RRP5_HUMAN	programmed cell death 11	79					mRNA processing|rRNA processing	nucleolus	RNA binding|transcription factor binding			ovary(2)|breast(2)|skin(2)|central_nervous_system(1)	7		Colorectal(252;0.0747)|Breast(234;0.128)		Epithelial(162;7.21e-09)|all cancers(201;1.17e-08)|BRCA - Breast invasive adenocarcinoma(275;0.208)		TCTTCTAGTCCCTGTGTGAGG	0.433													34	91					0	0	0.003755	0	0
NEURL	9148	broad.mit.edu	37	10	105349906	105349906	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:105349906C>T	uc001kxh.2	+	6	1912	c.1502C>T	c.(1501-1503)TCG>TTG	p.S501L	SH3PXD2A_uc010qqr.1_Intron	NM_004210	NP_004201	O76050	NEU1A_HUMAN	neuralized-like	501					nervous system development	perinuclear region of cytoplasm	zinc ion binding				0				Epithelial(162;2.12e-09)|all cancers(201;6.99e-08)|BRCA - Breast invasive adenocarcinoma(275;0.125)		GCCCCCAATTCGCCAGTGAGC	0.632													18	63					0	0	0.004990	0	0
COL17A1	1308	broad.mit.edu	37	10	105819949	105819949	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:105819949C>T	uc001kxr.2	-	14	1238	c.1069G>A	c.(1069-1071)GAG>AAG	p.E357K	COL17A1_uc010qqv.1_Missense_Mutation_p.E341K	NM_000494	NP_000485	Q9UMD9	COHA1_HUMAN	alpha 1 type XVII collagen	357	Cytoplasmic (Potential).|Nonhelical region (NC16).				cell-matrix adhesion|epidermis development|hemidesmosome assembly	basement membrane|cell-cell junction|collagen|hemidesmosome|integral to plasma membrane	protein binding			ovary(4)|pancreas(1)	5		Colorectal(252;0.103)|Breast(234;0.122)		Epithelial(162;2.5e-09)|all cancers(201;7.94e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0165)		AGCTCCATCTCCTTCTTGGCA	0.527													17	41					0	0	0.006122	0	0
C10orf79	80217	broad.mit.edu	37	10	105923860	105923860	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:105923860C>T	uc001kxw.2	-	24	3354	c.3238G>A	c.(3238-3240)GAT>AAT	p.D1080N	C10orf79_uc009xxq.2_Missense_Mutation_p.D388N	NM_025145	NP_079421	Q8NDM7	WDR96_HUMAN	hypothetical protein LOC80217	1080											0		Colorectal(252;0.178)		Epithelial(162;4.83e-10)|all cancers(201;2.26e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0194)		ACCTCCTCATCTTGCACAACA	0.443													10	30					0	0	0.010729	0	0
ITPRIP	85450	broad.mit.edu	37	10	106074331	106074331	+	Silent	SNP	G	A	A	rs147963751		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:106074331G>A	uc001kye.2	-	2	1552	c.1479C>T	c.(1477-1479)GCC>GCT	p.A493A	ITPRIP_uc001kyf.2_Silent_p.A493A|ITPRIP_uc001kyg.2_Silent_p.A493A	NM_033397	NP_203755	Q8IWB1	IPRI_HUMAN	inositol 1,4,5-triphosphate receptor interacting	493						plasma membrane					0						CCCTGAGCACGGCCTCAGGGA	0.577													18	47					0	0	0.010504	0	0
CCDC147	159686	broad.mit.edu	37	10	106209871	106209871	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:106209871G>A	uc001kyh.2	+	17	2553	c.2419G>A	c.(2419-2421)GAA>AAA	p.E807K		NM_001008723	NP_001008723	Q5T655	CC147_HUMAN	coiled-coil domain containing 147	807	Potential.									ovary(2)|central_nervous_system(2)|skin(1)	5		Colorectal(252;0.103)|Breast(234;0.122)		Epithelial(162;7.55e-10)|all cancers(201;3.37e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0189)		ACAGAGCAAAGAATATAAATA	0.313													16	41					0	0	0.004990	0	0
SORCS3	22986	broad.mit.edu	37	10	106865208	106865208	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:106865208G>A	uc001kyi.1	+	7	1374	c.1147G>A	c.(1147-1149)GGG>AGG	p.G383R		NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	383	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		AACTAGAAGTGGGCCTTTTGC	0.473													21	41					0	0	0.012319	0	0
SORCS3	22986	broad.mit.edu	37	10	106865239	106865239	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:106865239C>T	uc001kyi.1	+	7	1405	c.1178C>T	c.(1177-1179)TCC>TTC	p.S393F		NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	393	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		GACATCAGTTCCCTGGTTGTC	0.498													17	57					0	0	0.004990	0	0
SORCS3	22986	broad.mit.edu	37	10	106907396	106907396	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:106907396G>A	uc001kyi.1	+	9	1551	c.1324G>A	c.(1324-1326)GAC>AAC	p.D442N		NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	442	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		CATCAGTACAGACGAGAACCA	0.468													9	24					0	0	0.008291	0	0
SORCS3	22986	broad.mit.edu	37	10	106907543	106907543	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:106907543G>A	uc001kyi.1	+	9	1698	c.1471G>A	c.(1471-1473)GAA>AAA	p.E491K		NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	491	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		CATCATTATTGAATTGTATGA	0.368													9	24					0	0	0.004482	0	0
SORCS3	22986	broad.mit.edu	37	10	106974266	106974266	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:106974266G>A	uc001kyi.1	+	18	2669	c.2442G>A	c.(2440-2442)CAG>CAA	p.Q814Q	SORCS3_uc010qqz.1_RNA	NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	814	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		CCAAGGCCCAGATGTGCCCTG	0.547													14	32					0	0	0.001855	0	0
SORCS3	22986	broad.mit.edu	37	10	107022213	107022213	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:107022213G>A	uc001kyi.1	+	26	3795	c.3568G>A	c.(3568-3570)GAG>AAG	p.E1190K		NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	1190	Cytoplasmic (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		GGAGCCTGAGGAGCTGCTGGA	0.532													8	26					0	0	0.006214	0	0
SORCS1	114815	broad.mit.edu	37	10	108366964	108366964	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:108366964G>A	uc001kym.2	-	23	3133	c.3125C>T	c.(3124-3126)CCA>CTA	p.P1042L	SORCS1_uc001kyl.2_Missense_Mutation_p.P1042L|SORCS1_uc009xxs.2_Missense_Mutation_p.P1042L|SORCS1_uc001kyn.1_Missense_Mutation_p.P1042L|SORCS1_uc001kyo.2_Missense_Mutation_p.P1042L	NM_052918	NP_443150	Q8WY21	SORC1_HUMAN	SORCS receptor 1 isoform a	1042	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity|protein binding			breast(1)|central_nervous_system(1)	2		Breast(234;0.0256)|Colorectal(252;0.09)|Lung NSC(174;0.168)		Epithelial(162;1.66e-05)|all cancers(201;0.000689)		TTCTCCAGCTGGATCCTGATA	0.542													11	35					0	0	0.008291	0	0
SORCS1	114815	broad.mit.edu	37	10	108367054	108367054	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:108367054G>A	uc001kym.2	-	23	3043	c.3035C>T	c.(3034-3036)GCC>GTC	p.A1012V	SORCS1_uc001kyl.2_Missense_Mutation_p.A1012V|SORCS1_uc009xxs.2_Missense_Mutation_p.A1012V|SORCS1_uc001kyn.1_Missense_Mutation_p.A1012V|SORCS1_uc001kyo.2_Missense_Mutation_p.A1012V	NM_052918	NP_443150	Q8WY21	SORC1_HUMAN	SORCS receptor 1 isoform a	1012	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity|protein binding			breast(1)|central_nervous_system(1)	2		Breast(234;0.0256)|Colorectal(252;0.09)|Lung NSC(174;0.168)		Epithelial(162;1.66e-05)|all cancers(201;0.000689)		AACCCCTGTGGCCTGAGGGAC	0.572													5	20					0	0	0.001168	0	0
SORCS1	114815	broad.mit.edu	37	10	108427498	108427498	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:108427498G>A	uc001kym.2	-	17	2260	c.2252C>T	c.(2251-2253)TCC>TTC	p.S751F	SORCS1_uc001kyl.2_Missense_Mutation_p.S751F|SORCS1_uc009xxs.2_Missense_Mutation_p.S751F|SORCS1_uc001kyn.1_Missense_Mutation_p.S751F|SORCS1_uc001kyo.2_Missense_Mutation_p.S751F	NM_052918	NP_443150	Q8WY21	SORC1_HUMAN	SORCS receptor 1 isoform a	751	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity|protein binding			breast(1)|central_nervous_system(1)	2		Breast(234;0.0256)|Colorectal(252;0.09)|Lung NSC(174;0.168)		Epithelial(162;1.66e-05)|all cancers(201;0.000689)		TGACAGAGAGGATGGATTGAA	0.493													6	16					0	0	0.001984	0	0
PDCD4	27250	broad.mit.edu	37	10	112645010	112645010	+	Splice_Site	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:112645010G>A	uc001kzh.2	+	5	685	c.442_splice	c.e5-1	p.E148_splice	PDCD4_uc001kzg.2_Splice_Site_p.E137_splice|PDCD4_uc010qre.1_Splice_Site_p.E134_splice	NM_014456	NP_055271	Q53EL6	PDCD4_HUMAN	programmed cell death 4 isoform 1						apoptosis|cell aging|negative regulation of cell cycle|negative regulation of JUN kinase activity|negative regulation of transcription, DNA-dependent	cytosol|nucleus	protein binding|RNA binding			ovary(1)|breast(1)|skin(1)	3		Breast(234;0.0848)|Lung NSC(174;0.238)		Epithelial(162;0.000526)|all cancers(201;0.00794)|BRCA - Breast invasive adenocarcinoma(275;0.125)		TCCCCTCAAAGGAGAACTGTG	0.328													14	36					0	0	0.001855	0	0
ACSL5	51703	broad.mit.edu	37	10	114169281	114169281	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:114169281G>A	uc001kzs.2	+	7	690	c.549G>A	c.(547-549)GTG>GTA	p.V183V	ACSL5_uc001kzt.2_Silent_p.V183V|ACSL5_uc001kzu.2_Silent_p.V239V|ACSL5_uc009xxz.2_Silent_p.V183V|ACSL5_uc010qrj.1_5'UTR	NM_203379	NP_976313	Q9ULC5	ACSL5_HUMAN	acyl-CoA synthetase long-chain family member 5	183	Cytoplasmic (Potential).				fatty acid metabolic process|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane|mitochondrial outer membrane	ATP binding|long-chain fatty acid-CoA ligase activity			large_intestine(2)|skin(1)	3		Colorectal(252;0.117)|Breast(234;0.222)		Epithelial(162;0.0343)|all cancers(201;0.137)		TCGCCATGGTGATCTGTGACA	0.478													17	74					0	0	0.010504	0	0
ACSL5	51703	broad.mit.edu	37	10	114172982	114172982	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:114172982C>T	uc001kzs.2	+	12	1141	c.1000C>T	c.(1000-1002)CGG>TGG	p.R334W	ACSL5_uc001kzt.2_Missense_Mutation_p.R334W|ACSL5_uc001kzu.2_Missense_Mutation_p.R390W|ACSL5_uc009xxz.2_Missense_Mutation_p.R334W|ACSL5_uc010qrj.1_Missense_Mutation_p.R116W	NM_203379	NP_976313	Q9ULC5	ACSL5_HUMAN	acyl-CoA synthetase long-chain family member 5	334	Cytoplasmic (Potential).				fatty acid metabolic process|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane|mitochondrial outer membrane	ATP binding|long-chain fatty acid-CoA ligase activity			large_intestine(2)|skin(1)	3		Colorectal(252;0.117)|Breast(234;0.222)		Epithelial(162;0.0343)|all cancers(201;0.137)		AGGGGATATTCGGTTGCTGGC	0.468													14	69					0	0	0.003163	0	0
ACSL5	51703	broad.mit.edu	37	10	114176735	114176735	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:114176735C>T	uc001kzs.2	+	13	1314	c.1173C>T	c.(1171-1173)ATC>ATT	p.I391I	ACSL5_uc001kzt.2_Silent_p.I391I|ACSL5_uc001kzu.2_Silent_p.I447I|ACSL5_uc009xxz.2_Silent_p.I391I|ACSL5_uc010qrj.1_Silent_p.I173I	NM_203379	NP_976313	Q9ULC5	ACSL5_HUMAN	acyl-CoA synthetase long-chain family member 5	391	Cytoplasmic (Potential).				fatty acid metabolic process|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane|mitochondrial outer membrane	ATP binding|long-chain fatty acid-CoA ligase activity			large_intestine(2)|skin(1)	3		Colorectal(252;0.117)|Breast(234;0.222)		Epithelial(162;0.0343)|all cancers(201;0.137)		AGGGTATCATCAGGCATGATA	0.473													9	27					0	0	0.006214	0	0
ACSL5	51703	broad.mit.edu	37	10	114177616	114177616	+	Missense_Mutation	SNP	G	A	A	rs34585626	byFrequency	TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:114177616G>A	uc001kzs.2	+	14	1372	c.1231G>A	c.(1231-1233)GGA>AGA	p.G411R	ACSL5_uc001kzt.2_Missense_Mutation_p.G411R|ACSL5_uc001kzu.2_Missense_Mutation_p.G467R|ACSL5_uc009xxz.2_Missense_Mutation_p.G411R|ACSL5_uc010qrj.1_Missense_Mutation_p.G193R	NM_203379	NP_976313	Q9ULC5	ACSL5_HUMAN	acyl-CoA synthetase long-chain family member 5	411	Cytoplasmic (Potential).				fatty acid metabolic process|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane|mitochondrial outer membrane	ATP binding|long-chain fatty acid-CoA ligase activity			large_intestine(2)|skin(1)	3		Colorectal(252;0.117)|Breast(234;0.222)		Epithelial(162;0.0343)|all cancers(201;0.137)		CAGCCTGGGCGGAAGGGTTCG	0.373													15	75					0	0	0.006122	0	0
ADRB1	153	broad.mit.edu	37	10	115804525	115804525	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:115804525G>A	uc001lba.2	+	1	720	c.634G>A	c.(634-636)GAC>AAC	p.D212N		NM_000684	NP_000675	P08588	ADRB1_HUMAN	beta-1-adrenergic receptor	212	Extracellular (By similarity).				positive regulation of cAMP biosynthetic process	integral to plasma membrane	alpha-2A adrenergic receptor binding|beta1-adrenergic receptor activity|protein heterodimerization activity				0		Colorectal(252;0.172)|Breast(234;0.188)		Epithelial(162;0.0124)|all cancers(201;0.0298)	Acebutolol(DB01193)|Alprenolol(DB00866)|Amiodarone(DB01118)|Arbutamine(DB01102)|Atenolol(DB00335)|Betaxolol(DB00195)|Bevantolol(DB01295)|Bisoprolol(DB00612)|Bretylium(DB01158)|Carteolol(DB00521)|Carvedilol(DB01136)|Desipramine(DB01151)|Dobutamine(DB00841)|Dopamine(DB00988)|Epinephrine(DB00668)|Esmolol(DB00187)|Isoetharine(DB00221)|Isoproterenol(DB01064)|Labetalol(DB00598)|Levobunolol(DB01210)|Metipranolol(DB01214)|Metoprolol(DB00264)|Nadolol(DB01203)|Norepinephrine(DB00368)|Oxprenolol(DB01580)|Penbutolol(DB01359)|Pindolol(DB00960)|Practolol(DB01297)|Propranolol(DB00571)|Risperidone(DB00734)|Timolol(DB00373)|Ziprasidone(DB00246)	CTGCTACAACGACCCCAAGTG	0.652													4	19					0	0	0.000602	0	0
C10orf118	55088	broad.mit.edu	37	10	115922739	115922739	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:115922739G>A	uc001lbb.1	-	2	941	c.289C>T	c.(289-291)CCT>TCT	p.P97S	C10orf118_uc001lbc.1_Missense_Mutation_p.P97S|C10orf118_uc009xye.1_RNA|C10orf118_uc001lbd.2_Missense_Mutation_p.P97S|C10orf118_uc001lbe.2_Missense_Mutation_p.P97S	NM_018017	NP_060487	Q7Z3E2	CJ118_HUMAN	CTCL tumor antigen L14-2	97										ovary(2)	2		Colorectal(252;0.172)|Breast(234;0.188)		Epithelial(162;0.0161)|all cancers(201;0.0397)		TTTCCACTAGGAAAATTAGCT	0.348													11	31					0	0	0.008291	0	0
TDRD1	56165	broad.mit.edu	37	10	115970702	115970702	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:115970702G>A	uc001lbg.1	+	13	1789	c.1636G>A	c.(1636-1638)GAT>AAT	p.D546N	TDRD1_uc001lbf.2_Missense_Mutation_p.D537N|TDRD1_uc001lbh.1_Missense_Mutation_p.D537N|TDRD1_uc001lbi.1_Missense_Mutation_p.D537N|TDRD1_uc010qsc.1_Missense_Mutation_p.D207N|TDRD1_uc001lbj.2_Missense_Mutation_p.D255N	NM_198795	NP_942090	Q9BXT4	TDRD1_HUMAN	tudor domain containing 1	546	Tudor 2.				DNA methylation involved in gamete generation|gene silencing by RNA|germ cell development|meiosis|multicellular organismal development|piRNA metabolic process|spermatogenesis	pi-body	nucleic acid binding|protein binding|zinc ion binding				0		Colorectal(252;0.172)|Breast(234;0.188)		Epithelial(162;0.0343)|all cancers(201;0.0754)		AGCCATTGGTGATATATGTTG	0.353													6	44					0	0	0.001168	0	0
VWA2	340706	broad.mit.edu	37	10	116045715	116045715	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:116045715G>A	uc001lbl.1	+	11	1336	c.1015G>A	c.(1015-1017)GAA>AAA	p.E339K	VWA2_uc001lbk.1_Missense_Mutation_p.E339K|VWA2_uc009xyf.1_Missense_Mutation_p.E35K	NM_198496	NP_940898	Q5GFL6	VWA2_HUMAN	von Willebrand factor A domain containing 2	339						extracellular region				ovary(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5				Epithelial(162;0.036)|all cancers(201;0.0793)		GCTGAGCCTGGAATGCAGGGT	0.627													10	21					0	0	0.006214	0	0
ATRNL1	26033	broad.mit.edu	37	10	116919962	116919962	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:116919962C>T	uc001lcg.2	+	6	1377	c.991C>T	c.(991-993)CAA>TAA	p.Q331*	ATRNL1_uc001lce.2_RNA|ATRNL1_uc001lcf.2_Nonsense_Mutation_p.Q331*|ATRNL1_uc009xyq.2_Nonsense_Mutation_p.Q331*	NM_207303	NP_997186	Q5VV63	ATRN1_HUMAN	attractin-like 1 precursor	331	Extracellular (Potential).|Kelch 1.					integral to membrane	sugar binding			ovary(5)|lung(1)|central_nervous_system(1)	7		all_lung(145;0.0686)|Breast(234;0.0969)|Lung NSC(174;0.17)|Colorectal(252;0.234)		Epithelial(162;0.00031)|all cancers(201;0.000753)|LUSC - Lung squamous cell carcinoma(1;0.0515)|Lung(30;0.0827)		CAGTTCTTTTCAAATGGTCCT	0.338													20	45					0	0	0.008871	0	0
ATRNL1	26033	broad.mit.edu	37	10	117308974	117308974	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:117308974C>T	uc001lcg.2	+	26	4109	c.3723C>T	c.(3721-3723)TTC>TTT	p.F1241F	ATRNL1_uc010qsm.1_Silent_p.F370F|ATRNL1_uc010qsn.1_RNA	NM_207303	NP_997186	Q5VV63	ATRN1_HUMAN	attractin-like 1 precursor	1241	Helical; (Potential).					integral to membrane	sugar binding			ovary(5)|lung(1)|central_nervous_system(1)	7		all_lung(145;0.0686)|Breast(234;0.0969)|Lung NSC(174;0.17)|Colorectal(252;0.234)		Epithelial(162;0.00031)|all cancers(201;0.000753)|LUSC - Lung squamous cell carcinoma(1;0.0515)|Lung(30;0.0827)		CCAGTTGTTTCCTATCCTTAT	0.313													9	19					0	0	0.013537	0	0
GFRA1	2674	broad.mit.edu	37	10	117884979	117884979	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:117884979T>C	uc001lcj.2	-	6	1221	c.523A>G	c.(523-525)ATC>GTC	p.I175V	GFRA1_uc001lci.2_Missense_Mutation_p.I170V|GFRA1_uc009xyr.2_Missense_Mutation_p.I170V	NM_005264	NP_005255	P56159	GFRA1_HUMAN	GDNF family receptor alpha 1 isoform a	175	2.				axon guidance	anchored to membrane|extrinsic to membrane|plasma membrane	glial cell-derived neurotrophic factor receptor activity			ovary(1)|pancreas(1)	2		Lung NSC(174;0.21)		all cancers(201;0.0337)		CACGGGGTGATGTACGCCGAC	0.582													6	16					0	0	0.001168	0	0
PNLIP	5406	broad.mit.edu	37	10	118313319	118313319	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:118313319G>A	uc001lcm.2	+	6	583	c.540G>A	c.(538-540)AGG>AGA	p.R180R		NM_000936	NP_000927	P16233	LIPP_HUMAN	pancreatic lipase precursor	180					lipid catabolic process|retinoid metabolic process|steroid metabolic process	extracellular region	retinyl-palmitate esterase activity|triglyceride lipase activity			ovary(1)|central_nervous_system(1)|skin(1)	3				all cancers(201;0.0131)	Bentiromide(DB00522)|Orlistat(DB01083)	AGGCTGGAAGGAGAACCAATG	0.418													8	26					0	0	0.006214	0	0
PDZD8	118987	broad.mit.edu	37	10	119044546	119044546	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:119044546G>A	uc001lde.1	-	5	1897	c.1698C>T	c.(1696-1698)CCC>CCT	p.P566P		NM_173791	NP_776152	Q8NEN9	PDZD8_HUMAN	PDZ domain containing 8	566	Pro-rich.				intracellular signal transduction		metal ion binding				0		Colorectal(252;0.19)		all cancers(201;0.0121)		AAGTTTTTAGGGGTGGAGGTT	0.453													23	52					0	0	0.003954	0	0
SFXN4	119559	broad.mit.edu	37	10	120919252	120919252	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:120919252G>A	uc001leb.2	-	6	393	c.348C>T	c.(346-348)TTC>TTT	p.F116F	SFXN4_uc001ldy.2_5'UTR|SFXN4_uc001ldz.2_5'UTR|SFXN4_uc001lea.2_RNA	NM_213649	NP_998814	Q6P4A7	SFXN4_HUMAN	sideroflexin 4	116	Helical; (Potential).				iron ion homeostasis	integral to membrane|mitochondrial membrane	cation transmembrane transporter activity			ovary(1)	1		Lung NSC(174;0.094)|all_lung(145;0.123)		all cancers(201;0.0261)		TGGGTGCCATGAAAGGCAGGA	0.587													8	28					0	0	0.006214	0	0
BAG3	9531	broad.mit.edu	37	10	121429480	121429480	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:121429480C>T	uc001lem.2	+	2	604	c.298C>T	c.(298-300)CAT>TAT	p.H100Y	BAG3_uc001lel.2_Missense_Mutation_p.H100Y	NM_004281	NP_004272	O95817	BAG3_HUMAN	BCL2-associated athanogene 3	100					anti-apoptosis|apoptosis|protein folding	cytosol				ovary(2)	2		Lung NSC(174;0.109)|all_lung(145;0.142)		all cancers(201;0.00187)|BRCA - Breast invasive adenocarcinoma(275;0.148)		TCCTGTGCTCCATGAAGGCGC	0.637													24	77					0	0	0.005443	0	0
TACC2	10579	broad.mit.edu	37	10	123970371	123970371	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:123970371C>T	uc001lfv.2	+	9	6791	c.6431C>T	c.(6430-6432)CCC>CTC	p.P2144L	TACC2_uc001lfw.2_Missense_Mutation_p.P290L|TACC2_uc009xzx.2_Missense_Mutation_p.P2099L|TACC2_uc010qtv.1_Missense_Mutation_p.P2148L|TACC2_uc001lfx.2_5'UTR|TACC2_uc001lfy.2_5'UTR|TACC2_uc001lfz.2_Missense_Mutation_p.P222L|TACC2_uc001lga.2_Missense_Mutation_p.P222L|TACC2_uc009xzy.2_Missense_Mutation_p.P222L|TACC2_uc001lgb.2_Missense_Mutation_p.P179L|TACC2_uc010qtw.1_Missense_Mutation_p.P239L	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	2144						microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				ACCAAGAAACCCACAGAGACC	0.507													13	75					0	0	0.013537	0	0
PLEKHA1	59338	broad.mit.edu	37	10	124152833	124152833	+	Silent	SNP	C	T	T	rs142005373		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:124152833C>T	uc001lge.1	+	2	240	c.117C>T	c.(115-117)TTC>TTT	p.F39F	PLEKHA1_uc001lgf.1_Silent_p.F39F|PLEKHA1_uc001lgg.1_Silent_p.F39F|PLEKHA1_uc001lgh.2_Silent_p.F39F	NM_001001974	NP_001001974	Q9HB21	PKHA1_HUMAN	pleckstrin homology domain containing, family A	39	PH 1.				B cell receptor signaling pathway|cellular response to hydrogen peroxide|establishment of protein localization|negative regulation of protein kinase B signaling cascade|phosphatidylinositol 3-kinase cascade|ruffle organization	cytoplasm|nucleus|ruffle membrane	PDZ domain binding|phosphatidylinositol-3,4-bisphosphate binding			kidney(1)	1		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				AAGATAGTTTCGTGTGGTACA	0.343													4	20					0	0	0.009096	0	0
C10orf120	399814	broad.mit.edu	37	10	124457516	124457516	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:124457516G>A	uc001lgn.2	-	3	773	c.741C>T	c.(739-741)TTC>TTT	p.F247F		NM_001010912	NP_001010912	Q5SQS8	CJ120_HUMAN	hypothetical protein LOC399814	247										kidney(1)	1		all_neural(114;0.169)|Glioma(114;0.222)				CTTTTGACTTGAAAACTACAT	0.388													5	33					0	0	0.003080	0	0
CUZD1	50624	broad.mit.edu	37	10	124597036	124597036	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:124597036C>T	uc001lgq.2	-	4	815	c.483G>A	c.(481-483)TTG>TTA	p.L161L	CUZD1_uc001lgp.2_5'UTR|CUZD1_uc009yad.2_5'UTR|CUZD1_uc009yaf.2_Intron|CUZD1_uc001lgr.2_5'UTR|CUZD1_uc010qty.1_5'UTR|CUZD1_uc009yae.2_5'UTR|CUZD1_uc001lgs.2_Silent_p.L161L|CUZD1_uc010qtz.1_Silent_p.L161L	NM_022034	NP_071317	Q86UP6	CUZD1_HUMAN	CUB and zona pellucida-like domains 1 precursor	161	Extracellular (Potential).|CUB 2.				cell cycle|cell division|cell proliferation|substrate-dependent cell migration, cell attachment to substrate|trypsinogen activation	integral to membrane|transport vesicle membrane|zymogen granule membrane				ovary(1)|skin(1)	2		all_neural(114;0.169)|Glioma(114;0.222)		Colorectal(40;0.126)|COAD - Colon adenocarcinoma(40;0.141)		AGGATCCTTCCAAGGTATCCA	0.423													10	38					0	0	0.008291	0	0
CUZD1	50624	broad.mit.edu	37	10	124600823	124600823	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:124600823C>T	uc001lgq.2	-	2	436	c.104G>A	c.(103-105)AGT>AAT	p.S35N	CUZD1_uc009yaf.2_Intron|CUZD1_uc001lgr.2_Intron|CUZD1_uc010qty.1_5'UTR|CUZD1_uc009yae.2_Intron|CUZD1_uc001lgs.2_Missense_Mutation_p.S35N|CUZD1_uc010qtz.1_Missense_Mutation_p.S35N	NM_022034	NP_071317	Q86UP6	CUZD1_HUMAN	CUB and zona pellucida-like domains 1 precursor	35	CUB 1.|Extracellular (Potential).				cell cycle|cell division|cell proliferation|substrate-dependent cell migration, cell attachment to substrate|trypsinogen activation	integral to membrane|transport vesicle membrane|zymogen granule membrane				ovary(1)|skin(1)	2		all_neural(114;0.169)|Glioma(114;0.222)		Colorectal(40;0.126)|COAD - Colon adenocarcinoma(40;0.141)		ACCCCCTAGACTGACTGTGCA	0.493													4	37					0	0	0.000602	0	0
CHST15	51363	broad.mit.edu	37	10	125805315	125805315	+	Silent	SNP	G	A	A	rs41297147	byFrequency	TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:125805315G>A	uc001lhl.2	-	1	927	c.414C>T	c.(412-414)TCC>TCT	p.S138S	CHST15_uc001lhm.2_Silent_p.S138S|CHST15_uc001lhn.2_Silent_p.S138S|CHST15_uc010que.1_Silent_p.S138S|CHST15_uc001lho.2_Silent_p.S138S	NM_015892	NP_056976	Q7LFX5	CHSTF_HUMAN	B cell RAG associated protein	138	Lumenal (Potential).				hexose biosynthetic process	Golgi membrane|integral to membrane	3'-phosphoadenosine 5'-phosphosulfate binding|N-acetylgalactosamine 4-sulfate 6-O-sulfotransferase activity			ovary(1)	1						TATTTACAGAGGATTGGTGGT	0.438													28	98					0	0	0.010818	0	0
MKI67	4288	broad.mit.edu	37	10	129903183	129903183	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:129903183C>T	uc001lke.2	-	13	7116	c.6921G>A	c.(6919-6921)AAG>AAA	p.K2307K	MKI67_uc001lkf.2_Silent_p.K1947K|MKI67_uc009yav.1_Silent_p.K1882K|MKI67_uc009yaw.1_Silent_p.K1457K	NM_002417	NP_002408	P46013	KI67_HUMAN	antigen identified by monoclonal antibody Ki-67	2307	16 X 122 AA approximate repeats.|11.				cell proliferation	nucleolus	ATP binding|protein C-terminus binding			ovary(4)|central_nervous_system(2)|skin(1)	7		all_epithelial(44;2.12e-05)|all_lung(145;0.00679)|Lung NSC(174;0.00998)|all_neural(114;0.0936)|Colorectal(57;0.14)|Breast(234;0.166)|Melanoma(40;0.203)				GGGCCTTTTCCTTAGGAGTTT	0.478													20	132					0	0	0.010504	0	0
PWWP2B	170394	broad.mit.edu	37	10	134219344	134219344	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:134219344C>T	uc001lll.3	+	2	1369	c.1340C>T	c.(1339-1341)TCG>TTG	p.S447L	PWWP2B_uc009ybe.2_Missense_Mutation_p.S447L	NM_138499	NP_612508	Q6NUJ5	PWP2B_HUMAN	PWWP domain containing 2 isoform 1	447											0		all_cancers(35;6.69e-12)|all_epithelial(44;1.55e-08)|Lung NSC(174;0.000845)|all_lung(145;0.00144)|all_neural(114;0.0299)|Breast(234;0.106)|Colorectal(31;0.109)|Melanoma(40;0.123)|Glioma(114;0.203)|all_hematologic(284;0.224)		OV - Ovarian serous cystadenocarcinoma(35;7.49e-05)|Epithelial(32;0.00016)|all cancers(32;0.000186)		GGTGACCTCTCGCCTGGCCAC	0.697													6	10					0	0	0.001168	0	0
INPP5A	3632	broad.mit.edu	37	10	134540383	134540383	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:134540383C>T	uc001llp.2	+	9	954	c.706C>T	c.(706-708)CGG>TGG	p.R236W	INPP5A_uc001llo.1_Missense_Mutation_p.R236W|INPP5A_uc001llq.2_Missense_Mutation_p.R188W	NM_005539	NP_005530	Q14642	I5P1_HUMAN	inositol polyphosphate-5-phosphatase A	236					cell communication	membrane	inositol 1,3,4,5-tetrakisphosphate 5-phosphatase activity|inositol-1,4,5-trisphosphate 5-phosphatase activity|inositol-polyphosphate 5-phosphatase activity|PH domain binding			skin(1)	1		all_cancers(35;8.59e-13)|all_epithelial(44;5.49e-09)|Lung NSC(174;0.000854)|all_lung(145;0.00146)|all_neural(114;0.0299)|Colorectal(31;0.0599)|Breast(234;0.0849)|Melanoma(40;0.124)|all_hematologic(284;0.196)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;0.000102)|Epithelial(32;0.00023)|all cancers(32;0.000326)		TTTCAACTTCCGGCTGGATTC	0.522													14	41					0	0	0.004990	0	0
Unknown	0	broad.mit.edu	37	10	134647602	134647602	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:134647602C>T	uc010qux.1	-	41	6070	c.6070G>A	c.(6070-6072)GAT>AAT	p.D2024N		NM_017609	NP_060079			Homo sapiens cDNA, FLJ17989.																		TTCCCTGAATCGGCAACAACC	0.522													16	58					0	0	0.004990	0	0
KNDC1	85442	broad.mit.edu	37	10	135020700	135020700	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:135020700C>T	uc001llz.1	+	20	3640	c.3639C>T	c.(3637-3639)ATC>ATT	p.I1213I	KNDC1_uc001lma.1_3'UTR	NM_152643	NP_689856	Q76NI1	VKIND_HUMAN	kinase non-catalytic C-lobe domain (KIND)	1213					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction					upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(35;4.16e-10)|all_epithelial(44;2.07e-08)|Lung NSC(174;0.000845)|all_lung(145;0.00145)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.173)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;8.77e-06)|Epithelial(32;1.13e-05)|all cancers(32;1.51e-05)		TCGTGAACATCGCGGCCGCAC	0.672													5	18					0	0	0.000602	0	0
SYCE1	93426	broad.mit.edu	37	10	135367795	135367795	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:135367795C>T	uc009ybn.2	-	13	1061	c.956G>A	c.(955-957)TGA>TAA	p.*319*	CYP2E1_uc001lnl.1_Intron|SYCE1_uc001lnm.2_Silent_p.*191*|SYCE1_uc001lnn.2_Silent_p.*283*	NM_001143763	NP_001137235	Q8N0S2	SYCE1_HUMAN	synaptonemal complex central element protein 1	319					cell division	central element				ovary(1)	1		all_cancers(35;7.01e-07)|all_epithelial(44;1.45e-05)|Lung NSC(174;0.027)|all_lung(145;0.0384)|all_neural(114;0.0726)|Glioma(114;0.172)|Melanoma(40;0.175)		OV - Ovarian serous cystadenocarcinoma(35;1.12e-06)|all cancers(32;1.43e-06)|Epithelial(32;1.71e-06)		CCTCTCTCTTCAACTCCACCA	0.473													16	45					0	0	0.008871	0	0
SYCE1	93426	broad.mit.edu	37	10	135372435	135372435	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr10:135372435C>T	uc001lno.2	-	4	322	c.217G>A	c.(217-219)GAC>AAC	p.D73N	CYP2E1_uc001lnl.1_3'UTR|SYCE1_uc001lnm.2_5'UTR|SYCE1_uc009ybn.2_Missense_Mutation_p.D73N|SYCE1_uc001lnn.2_Missense_Mutation_p.D37N	NM_001143764	NP_001137236	Q8N0S2	SYCE1_HUMAN	synaptonemal complex central element protein 1	73	Potential.				cell division	central element				ovary(1)	1		all_cancers(35;7.01e-07)|all_epithelial(44;1.45e-05)|Lung NSC(174;0.027)|all_lung(145;0.0384)|all_neural(114;0.0726)|Glioma(114;0.172)|Melanoma(40;0.175)		OV - Ovarian serous cystadenocarcinoma(35;1.12e-06)|all cancers(32;1.43e-06)|Epithelial(32;1.71e-06)		TCTCCTAGGTCTTTATTGGCT	0.507													4	17					0	0	0.009096	0	0
PSMD13	5719	broad.mit.edu	37	11	251895	251895	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:251895C>T	uc001lol.2	+	12	1236	c.994C>T	c.(994-996)CAC>TAC	p.H332Y	PSMD13_uc010qvr.1_RNA|PSMD13_uc001loo.2_Missense_Mutation_p.H334Y|PSMD13_uc001lon.2_Missense_Mutation_p.H267Y|PSMD13_uc001lom.2_Missense_Mutation_p.H307Y|PSMD13_uc001lop.2_Missense_Mutation_p.H115Y	NM_002817	NP_002808	Q9UNM6	PSD13_HUMAN	proteasome 26S non-ATPase subunit 13 isoform 1	332	PCI.				anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	proteasome regulatory particle	protein binding			ovary(1)	1		all_cancers(49;1.58e-09)|all_epithelial(84;2.71e-06)|Breast(177;0.000162)|Ovarian(85;0.000626)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.0538)|all_lung(207;0.0713)		all cancers(45;7.79e-27)|Epithelial(43;4e-26)|OV - Ovarian serous cystadenocarcinoma(40;6.02e-21)|BRCA - Breast invasive adenocarcinoma(625;3.93e-05)|Lung(200;0.112)|LUSC - Lung squamous cell carcinoma(625;0.129)		CAAACGAGTCCACATGACCTG	0.527													46	121					0	0	0.014410	0	0
LRRC56	115399	broad.mit.edu	37	11	552096	552096	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:552096G>A	uc010qvz.1	+	12	1550	c.1045G>A	c.(1045-1047)GAG>AAG	p.E349K		NM_198075	NP_932341	Q8IYG6	LRC56_HUMAN	leucine rich repeat containing 56	349										skin(1)	1		all_cancers(49;2.16e-06)|all_epithelial(84;0.000256)|Breast(177;0.00122)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;7.63e-28)|Epithelial(43;7.29e-27)|OV - Ovarian serous cystadenocarcinoma(40;7.15e-21)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0375)|LUSC - Lung squamous cell carcinoma(625;0.0703)		CCAGGCCAGGGAGCCCCCCGA	0.657													11	71					0	0	0.001855	0	0
MUC6	4588	broad.mit.edu	37	11	1016871	1016872	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:1016871_1016872GG>AA	uc001lsw.2	-	31	5980_5981	c.5929_5930CC>TT	c.(5929-5931)CCC>TTC	p.P1977F		NM_005961	NP_005952	Q6W4X9	MUC6_HUMAN	mucin 6, gastric	1977	Thr-rich.				maintenance of gastrointestinal epithelium	extracellular region	extracellular matrix structural constituent			ovary(1)	1		all_cancers(49;3.3e-08)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		all cancers(45;1.24e-24)|BRCA - Breast invasive adenocarcinoma(625;0.00031)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)		GGAAGAGAAGGGACTGCTCCCT	0.589													39	629					0	0	0.004672	0	0
MUC6	4588	broad.mit.edu	37	11	1031885	1031885	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:1031885G>A	uc001lsw.2	-	3	335	c.284C>T	c.(283-285)TCG>TTG	p.S95L		NM_005961	NP_005952	Q6W4X9	MUC6_HUMAN	mucin 6, gastric	95	VWFD 1.				maintenance of gastrointestinal epithelium	extracellular region	extracellular matrix structural constituent			ovary(1)	1		all_cancers(49;3.3e-08)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		all cancers(45;1.24e-24)|BRCA - Breast invasive adenocarcinoma(625;0.00031)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)		GATGATCCGCGAGATGCTCCC	0.572													17	39					0	0	0.007413	0	0
MUC2	4583	broad.mit.edu	37	11	1087466	1087466	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:1087466G>A	uc001lsx.1	+	24	3244	c.3217G>A	c.(3217-3219)GAG>AAG	p.E1073K		NM_002457	NP_002448	Q02817	MUC2_HUMAN	mucin 2 precursor	1073						inner mucus layer|outer mucus layer	protein binding			lung(1)|breast(1)	2		all_cancers(49;1.08e-07)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.191)		BRCA - Breast invasive adenocarcinoma(625;0.000207)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)	Pranlukast(DB01411)	GCCCTTCTACGAGGCCTGTGT	0.647													10	24					0	0	0.001855	0	0
MUC2	4583	broad.mit.edu	37	11	1093693	1093693	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:1093693C>T	uc001lsx.1	+	33	12625	c.12598C>T	c.(12598-12600)CAC>TAC	p.H4200Y		NM_002457	NP_002448	Q02817	MUC2_HUMAN	mucin 2 precursor	4200						inner mucus layer|outer mucus layer	protein binding			lung(1)|breast(1)	2		all_cancers(49;1.08e-07)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.191)		BRCA - Breast invasive adenocarcinoma(625;0.000207)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)	Pranlukast(DB01411)	GCCCCCCACCCACACAAGCAC	0.617													53	96					0	0	0.014410	0	0
KRTAP5-2	440021	broad.mit.edu	37	11	1619005	1619005	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:1619005T>C	uc001ltv.2	-	1	520	c.476A>G	c.(475-477)AAG>AGG	p.K159R	LOC338651_uc009ycx.1_Silent_p.A35A|LOC338651_uc001ltt.1_RNA	NM_001004325	NP_001004325	Q701N4	KRA52_HUMAN	keratin associated protein 5-2	159	5.|6 X 4 AA repeats of C-C-X-P.					keratin filament					0		all_epithelial(84;0.00018)|Ovarian(85;0.0014)|Breast(177;0.00147)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.000614)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		GCAACAGGGCTTGCAGCAGCT	0.587													21	75					0	0	0.010504	0	0
KRTAP5-4	387267	broad.mit.edu	37	11	1642985	1642985	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:1642985G>A	uc009ycy.1	-	3	564	c.477C>T	c.(475-477)TCC>TCT	p.S159S		NM_001012709	NP_001012727	Q6L8H1	KRA54_HUMAN	keratin associated protein 5-4	173	9 X 4 AA repeats of C-C-X-P.					keratin filament					0		all_epithelial(84;0.00819)|Breast(177;0.00832)|Ovarian(85;0.0256)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		BRCA - Breast invasive adenocarcinoma(625;0.000614)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		AACCCCCACAGGAGCCACAGC	0.667													6	98					0	0	0.013537	0	0
KRTAP5-4	387267	broad.mit.edu	37	11	1643046	1643046	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:1643046G>A	uc009ycy.1	-	3	503	c.416C>T	c.(415-417)TCC>TTC	p.S139F		NM_001012709	NP_001012727	Q6L8H1	KRA54_HUMAN	keratin associated protein 5-4	153	9 X 4 AA repeats of C-C-X-P.					keratin filament					0		all_epithelial(84;0.00819)|Breast(177;0.00832)|Ovarian(85;0.0256)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		BRCA - Breast invasive adenocarcinoma(625;0.000614)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		ACCCCCACAGGAGACACAGCC	0.687													11	82					0	0	0.001855	0	0
IGF2	3481	broad.mit.edu	37	11	2156695	2156695	+	Missense_Mutation	SNP	G	A	A	rs142012621		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:2156695G>A	uc009yde.2	-	2	162	c.59C>T	c.(58-60)TCG>TTG	p.S20L	IGF2_uc001lvf.2_5'Flank|IGF2_uc001lvg.2_Missense_Mutation_p.S20L|IGF2_uc009ydf.2_Missense_Mutation_p.S76L|IGF2_uc001lvh.2_Missense_Mutation_p.S20L|INS-IGF2_uc001lvi.2_RNA|MIR483_hsa-mir-483|MI0002467_5'Flank|INS-IGF2_uc001lvj.1_RNA	NM_001007139	NP_001007140	P01344	IGF2_HUMAN	insulin-like growth factor 2 isoform 1	20					glucose metabolic process|ossification|phosphatidylinositol 3-kinase cascade involved in insulin receptor signaling|positive regulation of activated T cell proliferation|positive regulation of cell division|positive regulation of glycogen (starch) synthase activity|positive regulation of glycogen biosynthetic process|positive regulation of insulin receptor signaling pathway|positive regulation of MAPKKK cascade|positive regulation of mitosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of protein kinase B signaling cascade|regulation of gene expression by genetic imprinting|regulation of transcription, DNA-dependent|skeletal system development	extracellular space	growth factor activity|hormone activity|insulin receptor binding|insulin-like growth factor receptor binding|protein serine/threonine kinase activator activity|receptor activator activity			central_nervous_system(1)	1		all_epithelial(84;5.04e-06)|Breast(177;0.000777)|Ovarian(85;0.0014)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.191)|all_lung(207;0.24)	Colorectal(5;0.0179)|COAD - Colon adenocarcinoma(6;0.029)	BRCA - Breast invasive adenocarcinoma(625;1.09e-05)|LUSC - Lung squamous cell carcinoma(625;0.082)|Lung(200;0.153)		AATGCAGCACGAGGCGAAGGC	0.632													11	30					0	0	0.013537	0	0
OSBPL5	114879	broad.mit.edu	37	11	3115047	3115047	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:3115047T>C	uc001lxk.2	-	16	1896	c.1738A>G	c.(1738-1740)ACC>GCC	p.T580A	OSBPL5_uc010qxq.1_Missense_Mutation_p.T491A|OSBPL5_uc009ydw.2_Missense_Mutation_p.T512A|OSBPL5_uc001lxl.2_Missense_Mutation_p.T512A|OSBPL5_uc009ydx.2_Missense_Mutation_p.T604A|OSBPL5_uc001lxj.2_Missense_Mutation_p.T34A	NM_020896	NP_065947	Q9H0X9	OSBL5_HUMAN	oxysterol-binding protein-like protein 5 isoform	580					cholesterol metabolic process|cholesterol transport|Golgi to plasma membrane transport	cytosol	oxysterol binding|protein binding			large_intestine(2)|central_nervous_system(1)	3		all_epithelial(84;0.000236)|Medulloblastoma(188;0.00106)|Breast(177;0.00328)|Ovarian(85;0.00556)|all_neural(188;0.00681)		BRCA - Breast invasive adenocarcinoma(625;0.00607)|LUSC - Lung squamous cell carcinoma(625;0.207)		TTGATGCTGGTGCTACCCCCG	0.652													8	15					0	0	0.003080	0	0
MRGPRE	116534	broad.mit.edu	37	11	3249928	3249928	+	Silent	SNP	G	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:3249928G>C	uc001lxq.3	-	2	409	c.99C>G	c.(97-99)CTC>CTG	p.L33L		NM_001039165	NP_001034254	Q86SM8	MRGRE_HUMAN	MAS-related GPR, member E	33	Helical; Name=1; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			large_intestine(1)|ovary(1)	2		Medulloblastoma(188;0.00106)|all_epithelial(84;0.00111)|Breast(177;0.00328)|Ovarian(85;0.00556)|all_neural(188;0.00681)		BRCA - Breast invasive adenocarcinoma(625;0.00529)|LUSC - Lung squamous cell carcinoma(625;0.19)		CACCGAGGCCGAGCCCCTCGG	0.647													22	48					0	0	0.003954	0	0
ART5	116969	broad.mit.edu	37	11	3661515	3661515	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:3661515C>T	uc001lyb.1	-	2	537	c.144G>A	c.(142-144)GAG>GAA	p.E48E	ART5_uc001lyc.1_Silent_p.E48E|ART5_uc001lyd.2_Silent_p.E48E|ART5_uc009yea.2_Silent_p.E48E	NM_053017	NP_443750	Q96L15	NAR5_HUMAN	ADP-ribosyltransferase 5 precursor	48						extracellular region	NAD(P)+-protein-arginine ADP-ribosyltransferase activity			ovary(1)	1		Medulloblastoma(188;0.0025)|Breast(177;0.00328)|all_neural(188;0.0227)		BRCA - Breast invasive adenocarcinoma(625;0.0336)|LUSC - Lung squamous cell carcinoma(625;0.19)		GGGCTGCCTTCTCCTCCATCT	0.627													13	38					0	0	0.001855	0	0
ART1	417	broad.mit.edu	37	11	3681445	3681445	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:3681445C>T	uc001lye.1	+	3	797	c.696C>T	c.(694-696)TAC>TAT	p.Y232Y	ART1_uc009yeb.1_Silent_p.Y232Y	NM_004314	NP_004305	P52961	NAR1_HUMAN	ADP-ribosyltransferase 1 precursor	232					protein ADP-ribosylation	anchored to membrane|integral to plasma membrane|sarcoplasmic reticulum membrane	NAD(P)+-protein-arginine ADP-ribosyltransferase activity|NAD+ ADP-ribosyltransferase activity				0		Medulloblastoma(188;0.0025)|Breast(177;0.00328)|all_neural(188;0.0227)		BRCA - Breast invasive adenocarcinoma(625;0.0351)|LUSC - Lung squamous cell carcinoma(625;0.195)	Becaplermin(DB00102)	TCAAGGGCTACTCCTTCTTCC	0.597													9	43					0	0	0.004482	0	0
TRIM21	6737	broad.mit.edu	37	11	4410916	4410916	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:4410916C>T	uc001lyy.1	-	3	585	c.472G>A	c.(472-474)GTG>ATG	p.V158M		NM_003141	NP_003132	P19474	RO52_HUMAN	tripartite motif protein 21	158	Potential.				cell cycle|negative regulation of NF-kappaB transcription factor activity|negative regulation of protein deubiquitination|positive regulation of cell cycle|protein autoubiquitination|protein destabilization|protein monoubiquitination|protein polyubiquitination|protein trimerization	cytoplasmic mRNA processing body|nucleus	DNA binding|protein binding|RNA binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(3)|lung(1)	4		Medulloblastoma(188;0.0025)|Breast(177;0.0101)|all_neural(188;0.0227)		Epithelial(150;2.08e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0851)|LUSC - Lung squamous cell carcinoma(625;0.194)		GCAATTTCCACTTCCAACTTC	0.498													28	99					0	0	0.008361	0	0
TRIM21	6737	broad.mit.edu	37	11	4410968	4410968	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:4410968C>T	uc001lyy.1	-	3	533	c.420G>A	c.(418-420)CAG>CAA	p.Q140Q		NM_003141	NP_003132	P19474	RO52_HUMAN	tripartite motif protein 21	140	Potential.				cell cycle|negative regulation of NF-kappaB transcription factor activity|negative regulation of protein deubiquitination|positive regulation of cell cycle|protein autoubiquitination|protein destabilization|protein monoubiquitination|protein polyubiquitination|protein trimerization	cytoplasmic mRNA processing body|nucleus	DNA binding|protein binding|RNA binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(3)|lung(1)	4		Medulloblastoma(188;0.0025)|Breast(177;0.0101)|all_neural(188;0.0227)		Epithelial(150;2.08e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0851)|LUSC - Lung squamous cell carcinoma(625;0.194)		CTAATGCCACCTGGAGCTTCT	0.463													20	90					0	0	0.002780	0	0
OR52I2	143502	broad.mit.edu	37	11	4608102	4608102	+	Silent	SNP	G	A	A	rs2115929		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:4608102G>A	uc010qyh.1	+	1	60	c.60G>A	c.(58-60)AGG>AGA	p.R20R		NM_001005170	NP_001005170	Q8NH67	O52I2_HUMAN	olfactory receptor, family 52, subfamily I,	20	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;8.45e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0285)|LUSC - Lung squamous cell carcinoma(625;0.19)		GCATTAACAGGAAAAAAGTCT	0.453													19	61					0	0	0.008871	0	0
OR52I2	143502	broad.mit.edu	37	11	4608104	4608104	+	Missense_Mutation	SNP	A	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:4608104A>T	uc010qyh.1	+	1	62	c.62A>T	c.(61-63)AAA>ATA	p.K21I		NM_001005170	NP_001005170	Q8NH67	O52I2_HUMAN	olfactory receptor, family 52, subfamily I,	21	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;8.45e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0285)|LUSC - Lung squamous cell carcinoma(625;0.19)		ATTAACAGGAAAAAAGTCTCA	0.448													21	61					0	0	0.012319	0	0
OR52I2	143502	broad.mit.edu	37	11	4608395	4608395	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:4608395G>A	uc010qyh.1	+	1	353	c.353G>A	c.(352-354)GGA>GAA	p.G118E		NM_001005170	NP_001005170	Q8NH67	O52I2_HUMAN	olfactory receptor, family 52, subfamily I,	118	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;8.45e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0285)|LUSC - Lung squamous cell carcinoma(625;0.19)		TTCTGCTCAGGAGACAGCTCA	0.512													28	126					0	0	0.004656	0	0
OR51F1	256892	broad.mit.edu	37	11	4790428	4790428	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:4790428G>A	uc010qyl.1	-	1	720	c.720C>T	c.(718-720)TTC>TTT	p.F240F		NM_001004752	NP_001004752	A6NLW9	A6NLW9_HUMAN	olfactory receptor, family 51, subfamily F,	240						integral to membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.0778)		Epithelial(150;5.87e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0045)|LUSC - Lung squamous cell carcinoma(625;0.192)		CACAGGTGCTGAAGACCTTGT	0.488													21	36					0	0	0.012319	0	0
OR51F1	256892	broad.mit.edu	37	11	4790565	4790565	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:4790565G>A	uc010qyl.1	-	1	583	c.583C>T	c.(583-585)CGG>TGG	p.R195W		NM_001004752	NP_001004752	A6NLW9	A6NLW9_HUMAN	olfactory receptor, family 51, subfamily F,	195						integral to membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.0778)		Epithelial(150;5.87e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0045)|LUSC - Lung squamous cell carcinoma(625;0.192)		CTATTTGCCCGAATGTCTGAA	0.388													23	34					0	0	0.003954	0	0
OR51F1	256892	broad.mit.edu	37	11	4790871	4790871	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:4790871C>T	uc010qyl.1	-	1	277	c.277G>A	c.(277-279)GAA>AAA	p.E93K		NM_001004752	NP_001004752	A6NLW9	A6NLW9_HUMAN	olfactory receptor, family 51, subfamily F,	93						integral to membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.0778)		Epithelial(150;5.87e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0045)|LUSC - Lung squamous cell carcinoma(625;0.192)		AGACTGATTTCACGTGCCTCA	0.423													12	22					0	0	0.001855	0	0
OR51F1	256892	broad.mit.edu	37	11	4790995	4790995	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:4790995G>A	uc010qyl.1	-	1	153	c.153C>T	c.(151-153)ATC>ATT	p.I51I		NM_001004752	NP_001004752	A6NLW9	A6NLW9_HUMAN	olfactory receptor, family 51, subfamily F,	51						integral to membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.0778)		Epithelial(150;5.87e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0045)|LUSC - Lung squamous cell carcinoma(625;0.192)		GCTGGGTAATGATGACAAACA	0.463													8	25					0	0	0.003080	0	0
OR51F2	119694	broad.mit.edu	37	11	4843255	4843255	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:4843255C>T	uc010qyn.1	+	1	640	c.640C>T	c.(640-642)CTG>TTG	p.L214L		NM_001004753	NP_001004753	Q8NH61	O51F2_HUMAN	olfactory receptor, family 51, subfamily F,	214	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.0778)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		CATCCTTGGTCTGTTTGCGCT	0.468													35	74					0	0	0.006230	0	0
OR51S1	119692	broad.mit.edu	37	11	4869580	4869580	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:4869580G>A	uc010qyo.1	-	1	859	c.859C>T	c.(859-861)CAT>TAT	p.H287Y		NM_001004758	NP_001004758	Q8NGJ8	O51S1_HUMAN	olfactory receptor, family 51, subfamily S,	287	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		AGAAGGAAATGGACATAGGAT	0.448													14	54					0	0	0.004990	0	0
OR51T1	401665	broad.mit.edu	37	11	4903267	4903267	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:4903267G>A	uc010qyp.1	+	1	219	c.219G>A	c.(217-219)ATG>ATA	p.M73I		NM_001004759	NP_001004759	Q8NGJ9	O51T1_HUMAN	olfactory receptor, family 51, subfamily T,	46	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|large_intestine(1)	3		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;4.77e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|LUSC - Lung squamous cell carcinoma(625;0.19)		GAAACAGTATGATCTTTCTTG	0.478													24	95					0	0	0.003330	0	0
OR51T1	401665	broad.mit.edu	37	11	4903640	4903640	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:4903640C>T	uc010qyp.1	+	1	592	c.592C>T	c.(592-594)CAT>TAT	p.H198Y		NM_001004759	NP_001004759	Q8NGJ9	O51T1_HUMAN	olfactory receptor, family 51, subfamily T,	171	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|large_intestine(1)	3		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;4.77e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|LUSC - Lung squamous cell carcinoma(625;0.19)		TGTGTCTTTTCATGGGGGTCA	0.463													28	113					0	0	0.004656	0	0
MMP26	56547	broad.mit.edu	37	11	5010967	5010967	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:5010967G>A	uc001lzv.2	+	2	207	c.189G>A	c.(187-189)CGG>CGA	p.R63R		NM_021801	NP_068573	Q9NRE1	MMP26_HUMAN	matrix metalloproteinase 26 preproprotein	63					collagen catabolic process|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Medulloblastoma(188;0.0025)|Breast(177;0.0204)|all_neural(188;0.0227)		Epithelial(150;1.33e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0287)|LUSC - Lung squamous cell carcinoma(625;0.191)		AATTCCATCGGAATGGGACAG	0.522													6	25					0	0	0.001168	0	0
MMP26	56547	broad.mit.edu	37	11	5011075	5011075	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:5011075G>A	uc001lzv.2	+	2	315	c.297G>A	c.(295-297)TGG>TGA	p.W99*		NM_021801	NP_068573	Q9NRE1	MMP26_HUMAN	matrix metalloproteinase 26 preproprotein	99					collagen catabolic process|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Medulloblastoma(188;0.0025)|Breast(177;0.0204)|all_neural(188;0.0227)		Epithelial(150;1.33e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0287)|LUSC - Lung squamous cell carcinoma(625;0.191)		GATGCAAGTGGAATAAGCACA	0.527													10	25					0	0	0.006214	0	0
OR51L1	119682	broad.mit.edu	37	11	5020604	5020604	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:5020604C>T	uc010qyu.1	+	1	392	c.392C>T	c.(391-393)CCA>CTA	p.P131L		NM_001004755	NP_001004755	Q8NGJ5	O51L1_HUMAN	olfactory receptor, family 51, subfamily L,	131	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0061)|all_neural(188;0.0479)|Breast(177;0.086)		Epithelial(150;1.75e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0285)|LUSC - Lung squamous cell carcinoma(625;0.19)		ATCTGCCATCCACTGCACTAC	0.493													42	108					0	0	0.011902	0	0
OR51L1	119682	broad.mit.edu	37	11	5021147	5021147	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:5021147G>A	uc010qyu.1	+	1	935	c.935G>A	c.(934-936)AGG>AAG	p.R312K		NM_001004755	NP_001004755	Q8NGJ5	O51L1_HUMAN	olfactory receptor, family 51, subfamily L,	312	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0061)|all_neural(188;0.0479)|Breast(177;0.086)		Epithelial(150;1.75e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0285)|LUSC - Lung squamous cell carcinoma(625;0.19)		TTTGTCCTAAGGAGGAGGTTT	0.403													16	27					0	0	0.004990	0	0
OR52J3	119679	broad.mit.edu	37	11	5068044	5068044	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:5068044G>A	uc010qyv.1	+	1	289	c.289G>A	c.(289-291)GGA>AGA	p.G97R		NM_001001916	NP_001001916	Q8NH60	O52J3_HUMAN	olfactory receptor, family 52, subfamily J,	97	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|lung(1)|skin(1)	3		Medulloblastoma(188;0.00131)|all_neural(188;0.0189)|Breast(177;0.0204)		Epithelial(150;9.29e-10)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.19)		GATTAACTATGGAGCTTGTGT	0.502													16	44					0	0	0.006122	0	0
OR52J3	119679	broad.mit.edu	37	11	5068330	5068330	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:5068330G>A	uc010qyv.1	+	1	575	c.575G>A	c.(574-576)GGA>GAA	p.G192E		NM_001001916	NP_001001916	Q8NH60	O52J3_HUMAN	olfactory receptor, family 52, subfamily J,	192	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|lung(1)|skin(1)	3		Medulloblastoma(188;0.00131)|all_neural(188;0.0189)|Breast(177;0.0204)		Epithelial(150;9.29e-10)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.19)		TTGTCCTGTGGAAACATTCGT	0.433													26	68					0	0	0.003330	0	0
OR52A1	23538	broad.mit.edu	37	11	5172912	5172912	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:5172912G>A	uc010qyy.1	-	1	688	c.688C>T	c.(688-690)CGT>TGT	p.R230C		NM_012375	NP_036507	Q9UKL2	O52A1_HUMAN	olfactory receptor, family 52, subfamily A,	230	Cytoplasmic (Potential).				sensory perception of smell	integral to plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2		Medulloblastoma(188;0.00106)|Breast(177;0.0155)|all_neural(188;0.0189)		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TGGGGCAAACGAAAAACTGTG	0.423													9	40					0	0	0.004482	0	0
OR52A1	23538	broad.mit.edu	37	11	5173510	5173510	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:5173510C>T	uc010qyy.1	-	1	90	c.90G>A	c.(88-90)GGG>GGA	p.G30G		NM_012375	NP_036507	Q9UKL2	O52A1_HUMAN	olfactory receptor, family 52, subfamily A,	30	Helical; Name=1; (Potential).				sensory perception of smell	integral to plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2		Medulloblastoma(188;0.00106)|Breast(177;0.0155)|all_neural(188;0.0189)		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		AGAATGGAATCCCAATCCAGC	0.458													15	30					0	0	0.002450	0	0
OR51V1	283111	broad.mit.edu	37	11	5221098	5221098	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:5221098G>A	uc010qyz.1	-	1	833	c.833C>T	c.(832-834)TCC>TTC	p.S278F		NM_001004760	NP_001004760	Q9H2C8	O51V1_HUMAN	olfactory receptor, family 51, subfamily V,	278	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.83e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GGCCACGGGGGAAAGGTGCTT	0.463													9	31					0	0	0.008291	0	0
OR51B4	79339	broad.mit.edu	37	11	5322889	5322889	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:5322889G>A	uc010qza.1	-	1	288	c.288C>T	c.(286-288)TTC>TTT	p.F96F	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron	NM_033179	NP_149419	Q9Y5P0	O51B4_HUMAN	olfactory receptor, family 51, subfamily B,	96	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)|skin(1)	2		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.76e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		AGGATTGGGTGAAACAGGCAG	0.507													11	37					0	0	0.010729	0	0
OR51B2	79345	broad.mit.edu	37	11	5345396	5345396	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:5345396G>A	uc001mao.1	-	1	187	c.132C>T	c.(130-132)CTC>CTT	p.L44L	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron	NM_033180	NP_149420	Q9Y5P1	O51B2_HUMAN	olfactory receptor, family 51, subfamily B,	44	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TGATGAGGTAGAGGAGCATGC	0.527													23	66					0	0	0.014323	0	0
OR51B5	282763	broad.mit.edu	37	11	5364400	5364400	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:5364400C>T	uc001map.1	-	1	355	c.355G>A	c.(355-357)GAC>AAC	p.D119N	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Missense_Mutation_p.D119N	NM_001005567	NP_001005567	Q9H339	O51B5_HUMAN	olfactory receptor, family 51, subfamily B,	119	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;3.05e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		ATAAAACGGTCATAGGCCATG	0.473													17	43					0	0	0.004007	0	0
OR51B6	390058	broad.mit.edu	37	11	5372791	5372791	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:5372791G>A	uc010qzb.1	+	1	54	c.54G>A	c.(52-54)ATG>ATA	p.M18I	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004750	NP_001004750	Q9H340	O51B6_HUMAN	olfactory receptor, family 51, subfamily B,	18	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TCCCAGGCATGGAGAAGGCAC	0.453													11	25					0	0	0.001855	0	0
OR51B6	390058	broad.mit.edu	37	11	5373574	5373574	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:5373574C>T	uc010qzb.1	+	1	837	c.837C>T	c.(835-837)TTC>TTT	p.F279F	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004750	NP_001004750	Q9H340	O51B6_HUMAN	olfactory receptor, family 51, subfamily B,	279	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		ACATCCACTTCCTTTTCCCAC	0.393													20	60					0	0	0.010504	0	0
UBQLN3	50613	broad.mit.edu	37	11	5529180	5529180	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:5529180C>T	uc001may.1	-	2	1695	c.1609G>A	c.(1609-1611)GAA>AAA	p.E537K	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_5'Flank|OR51B5_uc001maq.1_5'Flank	NM_017481	NP_059509	Q9H347	UBQL3_HUMAN	ubiquilin 3	537										ovary(3)	3		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;1.74e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CGAGGTGCTTCAGTAGCTAGG	0.577													25	35					0	0	0.004656	0	0
OR52H1	390067	broad.mit.edu	37	11	5566366	5566366	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:5566366G>A	uc010qzh.1	-	1	388	c.388C>T	c.(388-390)CAC>TAC	p.H130Y	HBG2_uc001mak.1_Intron	NM_001005289	NP_001005289	Q8NGJ2	O52H1_HUMAN	olfactory receptor, family 52, subfamily H,	130	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;5.33e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GCTACATAGTGATCAAATGCC	0.453													12	25					0	0	0.013537	0	0
OR52H1	390067	broad.mit.edu	37	11	5566574	5566574	+	Missense_Mutation	SNP	C	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:5566574C>A	uc010qzh.1	-	1	180	c.180G>T	c.(178-180)GAG>GAT	p.E60D	HBG2_uc001mak.1_Intron	NM_001005289	NP_001005289	Q8NGJ2	O52H1_HUMAN	olfactory receptor, family 52, subfamily H,	60	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;5.33e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GAAGACTATGCTCCACCACAA	0.463													8	41					1.12685e-05	1.20622e-05	0.004482	1	0
TRIM5	85363	broad.mit.edu	37	11	5686228	5686228	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:5686228C>T	uc001mbm.1	-	8	1550	c.1293G>A	c.(1291-1293)GTG>GTA	p.V431V	TRIM78P_uc009yer.2_Intron|TRIM5_uc001mbl.1_RNA|TRIM5_uc001mbn.2_Intron|TRIM5_uc001mbo.2_Intron	NM_033034	NP_149023	Q9C035	TRIM5_HUMAN	tripartite motif protein TRIM5 isoform alpha	431	B30.2/SPRY.				interspecies interaction between organisms|protein trimerization|response to virus	cytoplasm|cytoplasmic mRNA processing body	ligase activity|protein binding|protein homodimerization activity|zinc ion binding			ovary(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0204)|all_neural(188;0.0212)|Lung NSC(207;0.138)|all_lung(207;0.221)		Epithelial(150;7.21e-09)|BRCA - Breast invasive adenocarcinoma(625;0.139)		GACAAATAATCACAGAGAGGG	0.408													8	25					0	0	0.003080	0	0
OR56B1	387748	broad.mit.edu	37	11	5758155	5758155	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:5758155C>T	uc001mbt.1	+	1	409	c.409C>T	c.(409-411)CAC>TAC	p.H137Y	TRIM5_uc001mbq.1_Intron|TRIM22_uc009yet.1_Intron|OR56B1_uc001mbs.1_Missense_Mutation_p.H137Y|OR56B1_uc009yev.1_Missense_Mutation_p.H137Y	NM_001005180	NP_001005180	Q8NGI3	O56B1_HUMAN	olfactory receptor, family 56, subfamily B,	137	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.086)		Epithelial(150;1.74e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.184)		GGCTATTTGTCACCCTCTTCG	0.443													10	31					0	0	0.008291	0	0
OR56B1	387748	broad.mit.edu	37	11	5758396	5758396	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:5758396G>A	uc001mbt.1	+	1	650	c.650G>A	c.(649-651)GGG>GAG	p.G217E	TRIM5_uc001mbq.1_Intron|TRIM22_uc009yet.1_Intron	NM_001005180	NP_001005180	Q8NGI3	O56B1_HUMAN	olfactory receptor, family 56, subfamily B,	217	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.086)		Epithelial(150;1.74e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.184)		CTTGGAATGGGGAGTGATCTA	0.478													7	29					0	0	0.001984	0	0
OR52N4	390072	broad.mit.edu	37	11	5776644	5776645	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:5776644_5776645GG>AT	uc001mbu.2	+	1	722_723	c.674_675GG>AT	c.(673-675)CGG>CAT	p.R225H	TRIM5_uc001mbq.1_Intron|TRIM22_uc009yet.1_Intron	NM_001005175	NP_001005175	Q8NGI2	O52N4_HUMAN	olfactory receptor, family 52, subfamily N,	225	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;1.87e-10)|LUSC - Lung squamous cell carcinoma(625;0.114)|BRCA - Breast invasive adenocarcinoma(625;0.135)|Lung(200;0.197)		ATGATTCTCCGGGCAGTGGTCA	0.49													20	60					0	0	0.004672	0	0
OR52E8	390079	broad.mit.edu	37	11	5878069	5878069	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:5878069G>A	uc010qzr.1	-	1	864	c.864C>T	c.(862-864)GTC>GTT	p.V288V	TRIM5_uc001mbq.1_Intron	NM_001005168	NP_001005168	Q6IFG1	O52E8_HUMAN	olfactory receptor, family 52, subfamily E,	288	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.114)		Epithelial(150;2.37e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GGGCTGGTGGGACAACCACAT	0.408													43	80					0	0	0.007835	0	0
OR52E4	390081	broad.mit.edu	37	11	5905919	5905919	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:5905919C>T	uc010qzs.1	+	1	397	c.397C>T	c.(397-399)CAG>TAG	p.Q133*	TRIM5_uc001mbq.1_Intron	NM_001005165	NP_001005165	Q8NGH9	O52E4_HUMAN	olfactory receptor, family 52, subfamily E,	133	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;1.24e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CAACCCTCTCCAGTACACCAT	0.423													32	71					0	0	0.013726	0	0
OR56A3	390083	broad.mit.edu	37	11	5969065	5969065	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:5969065C>T	uc010qzt.1	+	1	489	c.489C>T	c.(487-489)ATC>ATT	p.I163I		NM_001003443	NP_001003443	Q8NH54	O56A3_HUMAN	olfactory receptor, family 56, subfamily A,	163	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;9.41e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CTCTGCCCATCCCCATCCTTT	0.443													20	41					0	0	0.007413	0	0
OR52L1	338751	broad.mit.edu	37	11	6007653	6007653	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:6007653C>T	uc001mcd.2	-	1	563	c.508G>A	c.(508-510)GGA>AGA	p.G170R		NM_001005173	NP_001005173	Q8NGH7	O52L1_HUMAN	olfactory receptor, family 52, subfamily L,	170	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|pancreas(1)	2		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;1.98e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		AGTAGTAATCCCCTCACCAGC	0.498													6	49					0	0	0.001984	0	0
OR52L1	338751	broad.mit.edu	37	11	6007702	6007702	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:6007702G>A	uc001mcd.2	-	1	514	c.459C>T	c.(457-459)ATC>ATT	p.I153I		NM_001005173	NP_001005173	Q8NGH7	O52L1_HUMAN	olfactory receptor, family 52, subfamily L,	153	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|pancreas(1)	2		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;1.98e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CTGGATGCAGGATTGTGGAAT	0.502													16	29					0	0	0.004007	0	0
OR52L1	338751	broad.mit.edu	37	11	6008110	6008110	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:6008110G>A	uc001mcd.2	-	1	106	c.51C>T	c.(49-51)CTC>CTT	p.L17L		NM_001005173	NP_001005173	Q8NGH7	O52L1_HUMAN	olfactory receptor, family 52, subfamily L,	17	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|pancreas(1)	2		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;1.98e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		AATTGCTAAGGAGCATTATCA	0.463													5	47					0	0	0.000602	0	0
OR52B2	255725	broad.mit.edu	37	11	6190735	6190735	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:6190735G>A	uc010qzy.1	-	1	822	c.822C>T	c.(820-822)GTC>GTT	p.V274V		NM_001004052	NP_001004052	Q96RD2	O52B2_HUMAN	olfactory receptor, family 52, subfamily B,	274	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;3.69e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GCAAGATATGGACATGTTGAG	0.463													15	27					0	0	0.003163	0	0
C11orf42	160298	broad.mit.edu	37	11	6232201	6232201	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:6232201G>A	uc001mcj.2	+	3	979	c.931G>A	c.(931-933)GAC>AAC	p.D311N		NM_173525	NP_775796	Q8N5U0	CK042_HUMAN	hypothetical protein LOC160298	311	Pro-rich.									ovary(1)	1		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;1.95e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GGGCCCCAGGGACCCCGACGG	0.632													9	20					0	0	0.008291	0	0
TPP1	1200	broad.mit.edu	37	11	6636428	6636428	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:6636428G>A	uc001mel.1	-	11	1460	c.1399C>T	c.(1399-1401)CCC>TCC	p.P467S	TAF10_uc001mej.1_5'Flank|TPP1_uc001mek.1_Missense_Mutation_p.P224S	NM_000391	NP_000382	O14773	TPP1_HUMAN	tripeptidyl-peptidase I preproprotein	467					bone resorption|cell death|lipid metabolic process|lysosome organization|nervous system development|neuromuscular process controlling balance|peptide catabolic process|protein catabolic process|proteolysis	lysosome|melanosome|soluble fraction	metal ion binding|peptide binding|protein binding|serine-type endopeptidase activity|tripeptidyl-peptidase activity				0		Medulloblastoma(188;0.00263)|all_neural(188;0.026)		Epithelial(150;3.45e-09)|BRCA - Breast invasive adenocarcinoma(625;0.131)		CATGGAATGGGCACTCTGTTG	0.562													26	80					0	0	0.003954	0	0
OR10A5	144124	broad.mit.edu	37	11	6866952	6866952	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:6866952C>T	uc001met.1	+	1	39	c.39C>T	c.(37-39)ATC>ATT	p.I13I		NM_178168	NP_835462	Q9H207	O10A5_HUMAN	olfactory receptor, family 10, subfamily A,	13	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.68e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		GTGAATTTATCCTCATGAGCT	0.408													47	123					0	0	0.014410	0	0
OR10A4	283297	broad.mit.edu	37	11	6897966	6897966	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:6897966C>T	uc010rat.1	+	1	88	c.88C>T	c.(88-90)CTC>TTC	p.L30F		NM_207186	NP_997069	Q9H209	O10A4_HUMAN	olfactory receptor, family 10, subfamily A,	30	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.78e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		TCTACTGTTTCTCCTTTTCTT	0.443													49	78					0	0	0.014410	0	0
OR2D2	120776	broad.mit.edu	37	11	6912927	6912927	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:6912927C>T	uc010rau.1	-	1	805	c.805G>A	c.(805-807)GAA>AAA	p.E269K		NM_003700	NP_003691	Q9H210	OR2D2_HUMAN	olfactory receptor, family 2, subfamily D,	269	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.68e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		ACCGATTTTTCCTGCTGTTTG	0.438													13	31					0	0	0.001855	0	0
OR2D2	120776	broad.mit.edu	37	11	6913584	6913584	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:6913584G>A	uc010rau.1	-	1	148	c.148C>T	c.(148-150)CAT>TAT	p.H50Y		NM_003700	NP_003691	Q9H210	OR2D2_HUMAN	olfactory receptor, family 2, subfamily D,	50	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.68e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		GAGTCAACATGAACAAGGGAG	0.458													9	26					0	0	0.004482	0	0
ZNF215	7762	broad.mit.edu	37	11	6977606	6977606	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:6977606C>T	uc001mey.2	+	7	1986	c.1398C>T	c.(1396-1398)AAC>AAT	p.N466N	ZNF215_uc010raw.1_3'UTR|ZNF215_uc010rax.1_Silent_p.N228N|ZNF215_uc001mez.1_Intron	NM_013250	NP_037382	Q9UL58	ZN215_HUMAN	zinc finger protein 215	466	C2H2-type 3.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0				Epithelial(150;6.33e-08)|BRCA - Breast invasive adenocarcinoma(625;0.134)		AATGTGTTAACTGTGGAAAAT	0.393													25	34					0	0	0.003954	0	0
ZNF214	7761	broad.mit.edu	37	11	7022082	7022082	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:7022082C>T	uc001mfa.2	-	3	1135	c.832G>A	c.(832-834)GAT>AAT	p.D278N	ZNF214_uc010ray.1_Missense_Mutation_p.D278N|ZNF214_uc009yfh.1_Missense_Mutation_p.D278N	NM_013249	NP_037381	Q9UL59	ZN214_HUMAN	zinc finger protein 214	278	C2H2-type 1; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1				Epithelial(150;3.87e-08)|BRCA - Breast invasive adenocarcinoma(625;0.081)		TCAACTTCATCACATCCGTAC	0.433													22	101					0	0	0.003330	0	0
ZNF214	7761	broad.mit.edu	37	11	7022616	7022616	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:7022616G>A	uc001mfa.2	-	3	601	c.298C>T	c.(298-300)CGT>TGT	p.R100C	ZNF214_uc010ray.1_Missense_Mutation_p.R100C|ZNF214_uc009yfh.1_Missense_Mutation_p.R100C	NM_013249	NP_037381	Q9UL59	ZN214_HUMAN	zinc finger protein 214	100					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1				Epithelial(150;3.87e-08)|BRCA - Breast invasive adenocarcinoma(625;0.081)		CACTGGGAACGATCTTGCTGT	0.453													144	252					0	0	0.014410	0	0
NLRP14	338323	broad.mit.edu	37	11	7063913	7063913	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:7063913G>A	uc001mfb.1	+	4	979	c.656G>A	c.(655-657)AGA>AAA	p.R219K		NM_176822	NP_789792	Q86W24	NAL14_HUMAN	NLR family, pyrin domain containing 14	219	NACHT.				cell differentiation|multicellular organismal development|spermatogenesis		ATP binding			ovary(3)|breast(2)|pancreas(1)|lung(1)|skin(1)	8				Epithelial(150;4.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0871)		CTCAATGGGAGAGAAATTAAC	0.443													26	47					0	0	0.003330	0	0
NLRP14	338323	broad.mit.edu	37	11	7070921	7070921	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:7070921C>T	uc001mfb.1	+	6	2466	c.2143C>T	c.(2143-2145)CCT>TCT	p.P715S		NM_176822	NP_789792	Q86W24	NAL14_HUMAN	NLR family, pyrin domain containing 14	715					cell differentiation|multicellular organismal development|spermatogenesis		ATP binding			ovary(3)|breast(2)|pancreas(1)|lung(1)|skin(1)	8				Epithelial(150;4.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0871)		TATCACTTTCCCTGATGGTTG	0.358													14	55					0	0	0.004990	0	0
NLRP14	338323	broad.mit.edu	37	11	7092536	7092536	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:7092536C>T	uc001mfb.1	+	12	3602	c.3279C>T	c.(3277-3279)TTC>TTT	p.F1093F		NM_176822	NP_789792	Q86W24	NAL14_HUMAN	NLR family, pyrin domain containing 14	1093					cell differentiation|multicellular organismal development|spermatogenesis		ATP binding			ovary(3)|breast(2)|pancreas(1)|lung(1)|skin(1)	8				Epithelial(150;4.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0871)		GGTGGTGTTTCTGATTTGAAG	0.328													10	20					0	0	0.006214	0	0
RBMXL2	27288	broad.mit.edu	37	11	7110574	7110574	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:7110574G>A	uc001mfc.2	+	1	410	c.223G>A	c.(223-225)GAT>AAT	p.D75N		NM_014469	NP_055284	O75526	HNRGT_HUMAN	testes-specific heterogenous nuclear	75	RRM.					nucleus|ribonucleoprotein complex	nucleotide binding|RNA binding				0				Epithelial(150;5.14e-08)|BRCA - Breast invasive adenocarcinoma(625;0.189)		CAAGTCCCTGGATGGTAAGGC	0.672													5	7					0	0	0.000602	0	0
CYB5R2	51700	broad.mit.edu	37	11	7686720	7686720	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:7686720G>A	uc001mfm.2	-	9	954	c.716C>T	c.(715-717)CCT>CTT	p.P239L	CYB5R2_uc001mfn.2_RNA|CYB5R2_uc009yfk.2_Missense_Mutation_p.P239L	NM_016229	NP_057313	Q6BCY4	NB5R2_HUMAN	cytochrome b5 reductase b5R.2	239					sterol biosynthetic process	membrane|soluble fraction	cytochrome-b5 reductase activity				0				Epithelial(150;5.48e-08)|BRCA - Breast invasive adenocarcinoma(625;0.189)		CTTCGCTGGAGGAGGAAGGTG	0.572											OREG0020724	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	6	25					0	0	0.003080	0	0
OVCH2	341277	broad.mit.edu	37	11	7721909	7721909	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:7721909C>T	uc010rbf.1	-	7	835	c.835G>A	c.(835-837)GGA>AGA	p.G279R		NM_198185	NP_937828			ovochymase 2 precursor												0				Epithelial(150;7.9e-08)|BRCA - Breast invasive adenocarcinoma(625;0.197)		CCAGGGGATCCTTGATCACTT	0.507													8	22					0	0	0.003080	0	0
OR10A6	390093	broad.mit.edu	37	11	7950088	7950088	+	Missense_Mutation	SNP	C	T	T	rs139869925		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:7950088C>T	uc010rbh.1	-	1	122	c.122G>A	c.(121-123)GGA>GAA	p.G41E		NM_001004461	NP_001004461	Q8NH74	O10A6_HUMAN	olfactory receptor, family 10, subfamily A,	41	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2				Epithelial(150;1.38e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		AATGGCATTTCCTATCAGGGT	0.468													15	61					0	0	0.004007	0	0
NLRP10	338322	broad.mit.edu	37	11	7981506	7981506	+	Silent	SNP	C	T	T	rs144039243		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:7981506C>T	uc001mfv.1	-	2	1670	c.1653G>A	c.(1651-1653)CAG>CAA	p.Q551Q		NM_176821	NP_789791	Q86W26	NAL10_HUMAN	NLR family, pyrin domain containing 10	551							ATP binding			lung(4)|ovary(2)|pancreas(1)|kidney(1)|skin(1)	9				Epithelial(150;1.47e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		TAGATTCCATCTGTTCTTTAA	0.393													13	35					0	0	0.013537	0	0
NLRP10	338322	broad.mit.edu	37	11	7981881	7981881	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:7981881G>A	uc001mfv.1	-	2	1295	c.1278C>T	c.(1276-1278)TTC>TTT	p.F426F		NM_176821	NP_789791	Q86W26	NAL10_HUMAN	NLR family, pyrin domain containing 10	426	NACHT.						ATP binding			lung(4)|ovary(2)|pancreas(1)|kidney(1)|skin(1)	9				Epithelial(150;1.47e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		CTTCAAATAGGAACCTCTGGT	0.542													16	65					0	0	0.004007	0	0
EIF3F	8665	broad.mit.edu	37	11	8016539	8016539	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:8016539C>T	uc001mfw.2	+	6	789	c.756C>T	c.(754-756)ATC>ATT	p.I252I	EIF3F_uc010rbj.1_Silent_p.I103I	NM_003754	NP_003745	O00303	EIF3F_HUMAN	eukaryotic translation initiation factor 3,	252						cytosol|eukaryotic translation initiation factor 3 complex	protein binding|translation initiation factor activity			lung(1)	1				Epithelial(150;1.44e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		TTGACCTGATCATGAAGACCT	0.522													19	40					0	0	0.003330	0	0
TUB	7275	broad.mit.edu	37	11	8060477	8060477	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:8060477G>A	uc001mfy.2	+	1	298	c.57G>A	c.(55-57)GGG>GGA	p.G19G	TUB_uc010rbk.1_Intron	NM_003320	NP_003311	P50607	TUB_HUMAN	tubby isoform a	Error:Variant_position_missing_in_P50607_after_alignment					phagocytosis|positive regulation of phagocytosis|response to stimulus	cytoplasm|extracellular region|nucleus|plasma membrane				ovary(1)	1		all_lung(207;6.91e-20)|Lung NSC(207;3.36e-17)		Epithelial(150;1.69e-62)|BRCA - Breast invasive adenocarcinoma(625;8.54e-06)|LUSC - Lung squamous cell carcinoma(625;0.000184)		CCGAGACAGGGATTTTGTTCC	0.567													37	67					0	0	0.006230	0	0
RIC3	79608	broad.mit.edu	37	11	8132349	8132349	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:8132349C>T	uc001mgd.2	-	6	1060	c.1006G>A	c.(1006-1008)GAA>AAA	p.E336K	RIC3_uc001mgb.2_Missense_Mutation_p.E174K|RIC3_uc001mgc.2_Missense_Mutation_p.E335K|RIC3_uc001mge.2_Missense_Mutation_p.E154K|RIC3_uc010rbl.1_Missense_Mutation_p.E286K|RIC3_uc010rbm.1_Missense_Mutation_p.E364K|RIC3_uc009yfm.2_Missense_Mutation_p.E255K|RIC3_uc009yfn.2_Missense_Mutation_p.E139K	NM_024557	NP_078833	Q7Z5B4	RIC3_HUMAN	resistance to inhibitors of cholinesterase 3	336	Cytoplasmic (Potential).					endoplasmic reticulum membrane|Golgi membrane|integral to membrane				large_intestine(1)|ovary(1)|pancreas(1)	3				Epithelial(150;2.89e-07)|BRCA - Breast invasive adenocarcinoma(625;0.204)		GACCACTCTTCTTTGGTGGTT	0.488													19	93					0	0	0.008871	0	0
WEE1	7465	broad.mit.edu	37	11	9606822	9606822	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:9606822C>T	uc001mhs.2	+	7	1559	c.1306C>T	c.(1306-1308)CGA>TGA	p.R436*	WEE1_uc001mht.2_Nonsense_Mutation_p.R222*	NM_003390	NP_003381	P30291	WEE1_HUMAN	WEE1 tyrosine kinase isoform 1	436	Protein kinase.				blood coagulation|cell cycle checkpoint|cell division|G1/S transition of mitotic cell cycle|G2/M transition of mitotic cell cycle|mitosis|S phase of mitotic cell cycle	nucleoplasm	ATP binding|magnesium ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding|protein serine/threonine kinase activity			central_nervous_system(2)|ovary(1)|breast(1)|skin(1)	5				all cancers(16;4.59e-09)|Epithelial(150;3.15e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0484)		TTTCATATCTCGAACCTCAAT	0.299													12	46					0	0	0.013537	0	0
WEE1	7465	broad.mit.edu	37	11	9608075	9608075	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:9608075C>T	uc001mhs.2	+	9	1803	c.1550C>T	c.(1549-1551)CCG>CTG	p.P517L	WEE1_uc001mht.2_Missense_Mutation_p.P303L	NM_003390	NP_003381	P30291	WEE1_HUMAN	WEE1 tyrosine kinase isoform 1	517	Protein kinase.				blood coagulation|cell cycle checkpoint|cell division|G1/S transition of mitotic cell cycle|G2/M transition of mitotic cell cycle|mitosis|S phase of mitotic cell cycle	nucleoplasm	ATP binding|magnesium ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding|protein serine/threonine kinase activity			central_nervous_system(2)|ovary(1)|breast(1)|skin(1)	5				all cancers(16;4.59e-09)|Epithelial(150;3.15e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0484)		GAACCTCTTCCGAGAAATGGA	0.403													28	38					0	0	0.008361	0	0
AMPD3	272	broad.mit.edu	37	11	10506453	10506453	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:10506453G>A	uc001mio.1	+	5	1011	c.676G>A	c.(676-678)GGG>AGG	p.G226R	AMPD3_uc010rbz.1_Missense_Mutation_p.G67R|AMPD3_uc001min.1_Missense_Mutation_p.G235R|AMPD3_uc009yfw.1_RNA|AMPD3_uc009yfx.1_Missense_Mutation_p.G226R|AMPD3_uc009yfz.2_RNA|AMPD3_uc001mip.1_Missense_Mutation_p.G233R|AMPD3_uc009yfy.2_Missense_Mutation_p.G226R	NM_001025389	NP_001020560	Q01432	AMPD3_HUMAN	adenosine monophosphate deaminase 3 isoform 1B	226					AMP catabolic process|purine base metabolic process|purine ribonucleoside monophosphate biosynthetic process|purine-containing compound salvage	cytosol	AMP deaminase activity|metal ion binding			large_intestine(1)|ovary(1)	2				all cancers(16;1.14e-08)|Epithelial(150;2.83e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0291)		CCACATGCAGGGGGGCATCCT	0.572													43	48					0	0	0.014410	0	0
MICALCL	84953	broad.mit.edu	37	11	12313749	12313749	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:12313749C>T	uc001mkg.1	+	2	325	c.34C>T	c.(34-36)CCT>TCT	p.P12S		NM_032867	NP_116256	Q6ZW33	MICLK_HUMAN	MICAL C-terminal like	12	Ser-rich.				cell differentiation|multicellular organismal development|spermatogenesis	cytoplasm	mitogen-activated protein kinase binding			skin(1)	1				Epithelial(150;0.00177)		tccttctcttcctcttccttc	0.318													15	19					0	0	0.003163	0	0
MICALCL	84953	broad.mit.edu	37	11	12315394	12315394	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:12315394G>A	uc001mkg.1	+	3	707	c.416G>A	c.(415-417)AGG>AAG	p.R139K		NM_032867	NP_116256	Q6ZW33	MICLK_HUMAN	MICAL C-terminal like	139					cell differentiation|multicellular organismal development|spermatogenesis	cytoplasm	mitogen-activated protein kinase binding			skin(1)	1				Epithelial(150;0.00177)		GGGAAGGACAGGAGCTGGACA	0.592													13	14					0	0	0.013537	0	0
PARVA	55742	broad.mit.edu	37	11	12530148	12530148	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:12530148C>T	uc001mki.2	+	7	724	c.675C>T	c.(673-675)CTC>CTT	p.L225L	PARVA_uc010rck.1_Silent_p.L172L	NM_018222	NP_060692	Q9NVD7	PARVA_HUMAN	parvin, alpha	225					cell adhesion|cell junction assembly|cilium morphogenesis	actin cytoskeleton|cytosol|focal adhesion	actin binding			breast(3)	3				Epithelial(150;0.00624)		AAGGAATCCTCCAGTCTCGGC	0.433													17	66					0	0	0.004990	0	0
TEAD1	7003	broad.mit.edu	37	11	12903501	12903501	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:12903501C>T	uc001mkj.3	+	8	1191	c.526C>T	c.(526-528)CCA>TCA	p.P176S	TEAD1_uc001mkk.3_Missense_Mutation_p.P95S|TEAD1_uc009ygl.2_Missense_Mutation_p.P70S	NM_021961	NP_068780	P28347	TEAD1_HUMAN	TEA domain family member 1	191	Transcriptional activation (Potential).|Pro-rich.				hippo signaling cascade		DNA binding|protein binding|sequence-specific DNA binding transcription factor activity				0				Epithelial(150;0.00223)|BRCA - Breast invasive adenocarcinoma(625;0.236)		AGCCCCCATTCCAGGTGAGTG	0.552													26	37					0	0	0.006320	0	0
PDE3B	5140	broad.mit.edu	37	11	14891083	14891083	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:14891083G>A	uc001mln.2	+	16	3569	c.3216G>A	c.(3214-3216)TGG>TGA	p.W1072*	PDE3B_uc010rcr.1_Nonsense_Mutation_p.W1021*	NM_000922	NP_000913	Q13370	PDE3B_HUMAN	phosphodiesterase 3B	1072	Catalytic (By similarity).				cAMP catabolic process|insulin receptor signaling pathway|negative regulation of lipid catabolic process|platelet activation	cytosol|endoplasmic reticulum|Golgi apparatus|guanyl-nucleotide exchange factor complex|integral to membrane|microsome	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cGMP-inhibited cyclic-nucleotide phosphodiesterase activity|metal ion binding|protein kinase B binding				0						ACAAGATATGGAAGGAAATCG	0.383													19	42					0	0	0.008871	0	0
ABCC8	6833	broad.mit.edu	37	11	17436059	17436059	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:17436059C>T	uc001mnc.2	-	19	2516	c.2390G>A	c.(2389-2391)CGG>CAG	p.R797Q		NM_000352	NP_000343	Q09428	ABCC8_HUMAN	ATP-binding cassette, sub-family C, member 8	797	ABC transporter 1.|Cytoplasmic (By similarity).				carbohydrate metabolic process|energy reserve metabolic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium ion transmembrane transporter activity|sulfonylurea receptor activity			ovary(1)	1				READ - Rectum adenocarcinoma(2;0.0325)|Colorectal(2;0.1)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)|Gliclazide(DB01120)|Mitiglinide(DB01252)|Nateglinide(DB00731)|Repaglinide(DB00912)	AGGCTTTTACCGTTGTTTGTT	0.582													47	261					0	0	0.014410	0	0
ABCC8	6833	broad.mit.edu	37	11	17438479	17438479	+	Silent	SNP	G	A	A	rs142315209		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:17438479G>A	uc001mnc.2	-	17	2379	c.2253C>T	c.(2251-2253)CCC>CCT	p.P751P		NM_000352	NP_000343	Q09428	ABCC8_HUMAN	ATP-binding cassette, sub-family C, member 8	751	ABC transporter 1.|Cytoplasmic (By similarity).				carbohydrate metabolic process|energy reserve metabolic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium ion transmembrane transporter activity|sulfonylurea receptor activity			ovary(1)	1				READ - Rectum adenocarcinoma(2;0.0325)|Colorectal(2;0.1)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)|Gliclazide(DB01120)|Mitiglinide(DB01252)|Nateglinide(DB00731)|Repaglinide(DB00912)	GGCTGTACCTGGGGTCCTCTC	0.562													94	197					0	0	0.014410	0	0
KCNC1	3746	broad.mit.edu	37	11	17757825	17757825	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:17757825C>T	uc001mnk.3	+	1	331	c.276C>T	c.(274-276)GCC>GCT	p.A92A	KCNC1_uc009yhc.1_Silent_p.A92A	NM_004976	NP_004967	P48547	KCNC1_HUMAN	Shaw-related voltage-gated potassium channel	92	Cytoplasmic (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			upper_aerodigestive_tract(1)	1						AGGAGCTGGCCTTCTGGGGCA	0.692													19	36					0	0	0.014323	0	0
MRGPRX4	117196	broad.mit.edu	37	11	18195409	18195409	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:18195409C>T	uc001mnv.1	+	1	1026	c.606C>T	c.(604-606)ATC>ATT	p.I202I		NM_054032	NP_473373	Q96LA9	MRGX4_HUMAN	MAS-related GPR, member X4	202	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			skin(1)	1						TGGTCAGGATCCTCTGTGGAT	0.547													24	39					0	0	0.002780	0	0
LOC494141	494141	broad.mit.edu	37	11	18232048	18232048	+	RNA	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:18232048G>A	uc009yhh.2	+	2		c.1072G>A			LOC494141_uc001mnx.3_RNA|LOC494141_uc009yhi.1_RNA	NR_026541				Homo sapiens cDNA FLJ29025 fis, clone PRS03236.												0						GTTCTCATCTGAATTACCATC	0.388													12	24					0	0	0.013537	0	0
LDHC	3948	broad.mit.edu	37	11	18451403	18451403	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:18451403C>T	uc001mon.3	+	4	476	c.364C>T	c.(364-366)CCT>TCT	p.P122S	LDHC_uc001mom.3_Missense_Mutation_p.P122S|LDHC_uc009yhp.2_Missense_Mutation_p.P122S|LDHC_uc001moo.3_Missense_Mutation_p.P6S|LDHC_uc009yhq.2_Intron|LDHC_uc009yhr.2_Missense_Mutation_p.P6S	NM_017448	NP_059144	P07864	LDHC_HUMAN	L-lactate dehydrogenase C	122					glycolysis	cytoplasm	binding|L-lactate dehydrogenase activity				0					NADH(DB00157)	ATCAATCATTCCTGCCATAGT	0.423													14	56					0	0	0.002450	0	0
E2F8	79733	broad.mit.edu	37	11	19246255	19246255	+	Missense_Mutation	SNP	G	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:19246255G>C	uc001mpm.2	-	13	3076	c.2554C>G	c.(2554-2556)CTC>GTC	p.L852V	E2F8_uc009yhv.2_RNA|E2F8_uc001mpn.3_Missense_Mutation_p.L852V	NM_024680	NP_078956	A0AVK6	E2F8_HUMAN	E2F family member 8	852					cell cycle	transcription factor complex	DNA binding|sequence-specific DNA binding transcription factor activity			skin(1)	1						GGGACAAAGAGAGTTCCTAAG	0.438													10	52					0	0	0.013537	0	0
PRMT3	10196	broad.mit.edu	37	11	20486061	20486061	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:20486061C>T	uc001mqb.2	+	13	1533	c.1316C>T	c.(1315-1317)ACC>ATC	p.T439I	PRMT3_uc001mqc.2_Missense_Mutation_p.T362I|PRMT3_uc010rdn.1_Missense_Mutation_p.T377I	NM_005788	NP_005779	O60678	ANM3_HUMAN	protein arginine methyltransferase 3 isoform 1	439							zinc ion binding				0						TCAGATTTTACCCTGAAAATC	0.363													27	67					0	0	0.010818	0	0
SLC6A5	9152	broad.mit.edu	37	11	20636293	20636293	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:20636293C>T	uc001mqd.2	+	6	1327	c.1054C>T	c.(1054-1056)CCC>TCC	p.P352S	SLC6A5_uc009yic.2_Missense_Mutation_p.P117S	NM_004211	NP_004202	Q9Y345	SC6A5_HUMAN	solute carrier family 6 (neurotransmitter	352	Extracellular (Potential).				synaptic transmission	integral to membrane|plasma membrane	glycine:sodium symporter activity|neurotransmitter:sodium symporter activity			ovary(2)|breast(1)|skin(1)	4					Glycine(DB00145)	GACCGCTTATCCCAACGTGAC	0.398													37	77					0	0	0.006230	0	0
NELL1	4745	broad.mit.edu	37	11	21250883	21250883	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:21250883G>A	uc001mqe.2	+	14	1585	c.1432G>A	c.(1432-1434)GAT>AAT	p.D478N	NELL1_uc001mqf.2_Missense_Mutation_p.D478N|NELL1_uc009yid.2_Missense_Mutation_p.D506N|NELL1_uc010rdo.1_Missense_Mutation_p.D421N|NELL1_uc010rdp.1_Missense_Mutation_p.D238N	NM_006157	NP_006148	Q92832	NELL1_HUMAN	nel-like 1 isoform 1 precursor	478	EGF-like 3.				cell adhesion|nervous system development	extracellular region	calcium ion binding|structural molecule activity			ovary(2)|large_intestine(1)	3						AACAGAACACGATGAATGTGG	0.463													6	18					0	0	0.001984	0	0
ANO5	203859	broad.mit.edu	37	11	22279281	22279281	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:22279281G>A	uc001mqi.2	+	14	1705	c.1388G>A	c.(1387-1389)GGA>GAA	p.G463E	ANO5_uc001mqj.2_Missense_Mutation_p.G462E	NM_213599	NP_998764	Q75V66	ANO5_HUMAN	anoctamin 5 isoform a	463	Helical; (Potential).					chloride channel complex|endoplasmic reticulum membrane	chloride channel activity			central_nervous_system(3)|ovary(1)	4						TTTCTTTCAGGAGCCACAGTG	0.368													12	22					0	0	0.001855	0	0
SLC17A6	57084	broad.mit.edu	37	11	22381008	22381008	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:22381008C>T	uc001mqk.2	+	4	921	c.508C>T	c.(508-510)CCA>TCA	p.P170S		NM_020346	NP_065079	Q9P2U8	VGLU2_HUMAN	solute carrier family 17 (sodium-dependent	170	Vesicular (Potential).				sodium ion transport	cell junction|integral to membrane|synaptic vesicle membrane|synaptosome	L-glutamate transmembrane transporter activity|symporter activity			ovary(3)|breast(1)	4						TATGCTAATTCCATCAGCAGC	0.388													24	46					0	0	0.006320	0	0
SLC17A6	57084	broad.mit.edu	37	11	22384351	22384351	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:22384351C>T	uc001mqk.2	+	6	1141	c.728C>T	c.(727-729)TCT>TTT	p.S243F		NM_020346	NP_065079	Q9P2U8	VGLU2_HUMAN	solute carrier family 17 (sodium-dependent	243	Vesicular (Potential).				sodium ion transport	cell junction|integral to membrane|synaptic vesicle membrane|synaptosome	L-glutamate transmembrane transporter activity|symporter activity			ovary(3)|breast(1)	4						ACTGGCTGGTCTTCAGTGTTT	0.403													21	53					0	0	0.004656	0	0
LUZP2	338645	broad.mit.edu	37	11	24936033	24936033	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:24936033C>T	uc001mqs.2	+	7	705	c.471C>T	c.(469-471)ATC>ATT	p.I157I	LUZP2_uc009yif.2_Silent_p.I71I|LUZP2_uc009yig.2_Intron	NM_001009909	NP_001009909	Q86TE4	LUZP2_HUMAN	leucine zipper protein 2 precursor	157	Potential.					extracellular region				ovary(1)|skin(1)	2						CAAAAAAAATCCAAGCCCAGC	0.343													8	21					0	0	0.008291	0	0
LUZP2	338645	broad.mit.edu	37	11	25004772	25004772	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:25004772C>T	uc001mqs.2	+	9	932	c.698C>T	c.(697-699)CCA>CTA	p.P233L	LUZP2_uc009yif.2_Missense_Mutation_p.P147L|LUZP2_uc009yig.2_Missense_Mutation_p.P191L	NM_001009909	NP_001009909	Q86TE4	LUZP2_HUMAN	leucine zipper protein 2 precursor	233						extracellular region				ovary(1)|skin(1)	2						ACATCAAATCCAACTCGGATG	0.453													25	38					0	0	0.003330	0	0
SLC5A12	159963	broad.mit.edu	37	11	26743205	26743205	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:26743205G>A	uc001mra.2	-	1	370	c.57C>T	c.(55-57)TTC>TTT	p.F19F	SLC5A12_uc001mrb.2_Intron|SLC5A12_uc001mrc.3_Silent_p.F19F	NM_178498	NP_848593	Q1EHB4	SC5AC_HUMAN	solute carrier family 5 (sodium/glucose	19	Helical; (Potential).				sodium ion transport	apical plasma membrane|integral to membrane	symporter activity			ovary(1)|skin(1)	2						CAGAGGAAATGAAAAAGAGGG	0.448													24	53					0	0	0.005443	0	0
FIBIN	387758	broad.mit.edu	37	11	27016343	27016343	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:27016343G>A	uc001mrd.2	+	1	716	c.270G>A	c.(268-270)CAG>CAA	p.Q90Q		NM_203371	NP_976249	Q8TAL6	FIBIN_HUMAN	fin bud initiation factor homolog precursor	90						extracellular region|Golgi apparatus					0						TGGGCCGCCAGGTGGAGGATG	0.667													7	14					0	0	0.001984	0	0
FIBIN	387758	broad.mit.edu	37	11	27016391	27016391	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:27016391C>T	uc001mrd.2	+	1	764	c.318C>T	c.(316-318)TCC>TCT	p.S106S		NM_203371	NP_976249	Q8TAL6	FIBIN_HUMAN	fin bud initiation factor homolog precursor	106						extracellular region|Golgi apparatus					0						AAAGCATCTCCTACGACCTAG	0.632													5	37					0	0	0.000602	0	0
BDNF	627	broad.mit.edu	37	11	27679880	27679880	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:27679880G>A	uc010rdu.1	-	2	1083	c.232C>T	c.(232-234)CGG>TGG	p.R78W	BDNFOS_uc001mrm.2_RNA|BDNFOS_uc009yij.2_RNA|BDNFOS_uc009yik.2_RNA|BDNFOS_uc009yil.2_RNA|BDNFOS_uc001mrp.2_RNA|BDNFOS_uc009yim.2_RNA|BDNFOS_uc009yin.2_RNA|BDNFOS_uc009yio.2_RNA|BDNFOS_uc009yip.2_RNA|BDNFOS_uc001mrn.2_RNA|BDNFOS_uc009yiq.2_RNA|BDNFOS_uc001mro.2_RNA|BDNFOS_uc009yir.2_RNA|BDNFOS_uc009yis.2_Intron|BDNFOS_uc009yit.2_RNA|BDNFOS_uc009yiu.2_RNA|BDNFOS_uc009yiv.2_RNA|BDNFOS_uc009yiw.2_RNA|BDNFOS_uc009yix.2_RNA|BDNFOS_uc009yiy.2_RNA|BDNFOS_uc009yiz.2_RNA|BDNFOS_uc001mrq.3_RNA|BDNFOS_uc001mrr.3_RNA|BDNFOS_uc009yja.2_RNA|BDNFOS_uc009yjb.2_RNA|BDNF_uc010rdv.1_Missense_Mutation_p.R78W|BDNF_uc001mrt.2_Missense_Mutation_p.R93W|BDNF_uc010rdw.1_Missense_Mutation_p.R78W|BDNF_uc009yjd.2_Missense_Mutation_p.R78W|BDNF_uc001mru.2_Missense_Mutation_p.R78W|BDNF_uc010rdx.1_Missense_Mutation_p.R78W|BDNF_uc010rdy.1_Missense_Mutation_p.R78W|BDNF_uc009yjg.2_Missense_Mutation_p.R78W|BDNF_uc009yje.2_Missense_Mutation_p.R160W|BDNF_uc009yjf.2_Missense_Mutation_p.R107W|BDNF_uc001mrv.2_Missense_Mutation_p.R78W|BDNF_uc001mrw.3_Missense_Mutation_p.R78W|BDNF_uc001mrx.2_Missense_Mutation_p.R78W|BDNF_uc001mry.3_Missense_Mutation_p.R78W|BDNF_uc001mrz.3_Missense_Mutation_p.R78W|BDNF_uc001msa.2_Missense_Mutation_p.R86W	NM_001143816	NP_001137288	P23560	BDNF_HUMAN	brain-derived neurotrophic factor isoform a	78						extracellular region	growth factor activity				0						TCATTGGGCCGAACTTTCTGG	0.502													24	102					0	0	0.003954	0	0
DCDC1	341019	broad.mit.edu	37	11	31312362	31312362	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:31312362C>T	uc001msv.2	-	7	994	c.792G>A	c.(790-792)ATG>ATA	p.M264I	DCDC1_uc001msu.1_Intron	NM_181807	NP_861523	P59894	DCDC1_HUMAN	doublecortin domain containing 1	264					intracellular signal transduction					skin(1)	1	Lung SC(675;0.225)					TCAACCCATTCATTGTCCAAG	0.338													15	29					0	0	0.007413	0	0
RCN1	5954	broad.mit.edu	37	11	32119928	32119928	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:32119928C>T	uc010reb.1	+	3	747	c.481C>T	c.(481-483)CAT>TAT	p.H161Y	RCN1_uc010rea.1_Missense_Mutation_p.H110Y|RCN1_uc001mtk.2_5'UTR	NM_002901	NP_002892	Q15293	RCN1_HUMAN	reticulocalbin 1 precursor	161						endoplasmic reticulum lumen	calcium ion binding			large_intestine(1)	1	Lung SC(675;0.225)					TTCTTCAGATCATCACACCTT	0.468													9	47					0	0	0.013537	0	0
PRRG4	79056	broad.mit.edu	37	11	32874863	32874863	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:32874863G>A	uc001mtx.2	+	6	724	c.471G>A	c.(469-471)AGG>AGA	p.R157R		NM_024081	NP_076986	Q9BZD6	TMG4_HUMAN	proline rich Gla (G-carboxyglutamic acid) 4	157	Cytoplasmic (Potential).					extracellular region|Golgi apparatus|integral to membrane	calcium ion binding				0	Breast(20;0.206)					TCTATGAAAGGGGGAGGCACA	0.458													4	86					0	0	0.000602	0	0
CSTF3	1479	broad.mit.edu	37	11	33163455	33163455	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:33163455C>T	uc001muh.2	-	2	271	c.105G>A	c.(103-105)TGG>TGA	p.W35*	CSTF3_uc001mui.2_Nonsense_Mutation_p.W35*|CSTF3_uc001muj.2_Nonsense_Mutation_p.W35*	NM_001326	NP_001317	Q12996	CSTF3_HUMAN	cleavage stimulation factor subunit 3 isoform 1	35					mRNA cleavage|mRNA polyadenylation|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	nucleoplasm	protein binding|RNA binding				0						TGAGAATGCTCCAAGCATCAA	0.353													10	71					0	0	0.001855	0	0
NAT10	55226	broad.mit.edu	37	11	34165011	34165011	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:34165011G>A	uc001mvk.2	+	28	3149	c.2905G>A	c.(2905-2907)GAT>AAT	p.D969N	NAT10_uc010ren.1_Missense_Mutation_p.D897N	NM_024662	NP_078938	Q9H0A0	NAT10_HUMAN	N-acetyltransferase 10 isoform a	969	Required for localization to the nucleolus and midbody.					nucleolus	ATP binding|N-acetyltransferase activity|protein binding			ovary(1)|skin(1)	2		Acute lymphoblastic leukemia(5;0.0119)|all_hematologic(20;0.0231)				CCGTGGGGACGATGAAGAGTG	0.468													6	21					0	0	0.003080	0	0
SLC1A2	6506	broad.mit.edu	37	11	35287113	35287113	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:35287113G>A	uc001mwd.2	-	10	2206	c.1614C>T	c.(1612-1614)GTC>GTT	p.V538V	SLC1A2_uc001mwe.2_Silent_p.V529V|SLC1A2_uc010rev.1_Silent_p.V538V	NM_004171	NP_004162	P43004	EAA2_HUMAN	excitatory amino acid transporter 2	538					D-aspartate import|L-glutamate import|synaptic transmission	integral to membrane|membrane fraction	high-affinity glutamate transmembrane transporter activity|sodium:dicarboxylate symporter activity			ovary(2)|central_nervous_system(1)	3	all_lung(20;0.211)|all_epithelial(35;0.234)	all_hematologic(20;0.109)	STAD - Stomach adenocarcinoma(6;0.00731)		L-Glutamic Acid(DB00142)	GTGCAGCATAGACACATTGAT	0.388													39	87					0	0	0.007835	0	0
LDLRAD3	143458	broad.mit.edu	37	11	36248875	36248875	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:36248875C>T	uc001mwk.1	+	5	732	c.695C>T	c.(694-696)ACC>ATC	p.T232I	LDLRAD3_uc010rey.1_Missense_Mutation_p.T183I|LDLRAD3_uc010rez.1_Missense_Mutation_p.T111I|LDLRAD3_uc010rfa.1_Intron	NM_174902	NP_777562	Q86YD5	LRAD3_HUMAN	low density lipoprotein receptor class A domain	232	Cytoplasmic (Potential).					integral to membrane	receptor activity			central_nervous_system(1)	1	all_lung(20;0.089)|Lung NSC(22;0.175)|all_epithelial(35;0.177)	all_hematologic(20;0.124)				TGCAACGTCACCTACAACGTC	0.627													16	52					0	0	0.007413	0	0
LRRC4C	57689	broad.mit.edu	37	11	40136321	40136321	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:40136321G>A	uc001mxa.1	-	2	3486	c.1522C>T	c.(1522-1524)CCA>TCA	p.P508S	LRRC4C_uc001mxc.1_Missense_Mutation_p.P504S|LRRC4C_uc001mxd.1_Missense_Mutation_p.P504S|LRRC4C_uc001mxb.1_Missense_Mutation_p.P504S	NM_020929	NP_065980	Q9HCJ2	LRC4C_HUMAN	netrin-G1 ligand precursor	508					regulation of axonogenesis	integral to membrane	protein binding			ovary(4)|skin(3)|central_nervous_system(1)	8		all_lung(304;0.0575)|Lung NSC(402;0.138)				TCAGTCACTGGGATGGTGAAG	0.502													15	50					0	0	0.004990	0	0
LRRC4C	57689	broad.mit.edu	37	11	40136382	40136382	+	Silent	SNP	G	A	A	rs142652482		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:40136382G>A	uc001mxa.1	-	2	3425	c.1461C>T	c.(1459-1461)ACC>ACT	p.T487T	LRRC4C_uc001mxc.1_Silent_p.T483T|LRRC4C_uc001mxd.1_Silent_p.T483T|LRRC4C_uc001mxb.1_Silent_p.T483T	NM_020929	NP_065980	Q9HCJ2	LRC4C_HUMAN	netrin-G1 ligand precursor	487					regulation of axonogenesis	integral to membrane	protein binding			ovary(4)|skin(3)|central_nervous_system(1)	8		all_lung(304;0.0575)|Lung NSC(402;0.138)				TGGTCACATTGGTGGTCTCCC	0.512													12	32					0	0	0.010729	0	0
SYT13	57586	broad.mit.edu	37	11	45274136	45274136	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:45274136G>A	uc001myq.2	-	4	808	c.682C>T	c.(682-684)CCC>TCC	p.P228S	SYT13_uc009yku.1_Missense_Mutation_p.P84S	NM_020826	NP_065877	Q7L8C5	SYT13_HUMAN	synaptotagmin XIII	228	Cytoplasmic (Potential).|C2 1.					transport vesicle				ovary(1)	1						TCCGCCAGGGGGAGCACCAGG	0.682											OREG0020928	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	11	68					0	0	0.013537	0	0
CRY2	1408	broad.mit.edu	37	11	45868990	45868990	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:45868990C>T	uc010rgn.1	+	1	34	c.12C>T	c.(10-12)GTC>GTT	p.V4V	CRY2_uc009ykw.2_Intron	NM_021117	NP_066940	Q49AN0	CRY2_HUMAN	cryptochrome 2 (photolyase-like) isoform 1	Error:Variant_position_missing_in_Q49AN0_after_alignment					DNA repair|protein-chromophore linkage|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	blue light photoreceptor activity|damaged DNA binding|DNA photolyase activity|nucleotide binding|protein binding|single-stranded DNA binding			central_nervous_system(1)	1						TGGGCGGGGTCCACGTCGCCT	0.532													16	31					0	0	0.004990	0	0
HARBI1	283254	broad.mit.edu	37	11	46637537	46637537	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:46637537G>A	uc001ncy.2	-	2	499	c.251C>T	c.(250-252)TCC>TTC	p.S84F	KIAA0652_uc009yld.2_5'Flank|KIAA0652_uc001nda.2_5'Flank|KIAA0652_uc001ndb.2_5'Flank|KIAA0652_uc001ncz.2_5'Flank|KIAA0652_uc001ndc.2_5'Flank|KIAA0652_uc010rgv.1_5'Flank	NM_173811	NP_776172	Q96MB7	HARB1_HUMAN	harbinger transposase derived 1	84						cytoplasm|nucleus	metal ion binding|nuclease activity				0						AGTCTGGAAGGAACCTGAGGT	0.522													39	56					0	0	0.005524	0	0
F2	2147	broad.mit.edu	37	11	46747500	46747500	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:46747500G>A	uc001ndf.3	+	7	694	c.651G>A	c.(649-651)CGG>CGA	p.R217R	F2_uc001ndg.3_RNA	NM_000506	NP_000497	P00734	THRB_HUMAN	coagulation factor II preproprotein	217	Kringle 2.				activation of caspase activity|acute-phase response|blood coagulation, intrinsic pathway|cell surface receptor linked signaling pathway|cytosolic calcium ion homeostasis|fibrinolysis|leukocyte migration|negative regulation of astrocyte differentiation|negative regulation of fibrinolysis|negative regulation of platelet activation|negative regulation of proteolysis|peptidyl-glutamic acid carboxylation|platelet activation|positive regulation of collagen biosynthetic process|positive regulation of protein phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of release of sequestered calcium ion into cytosol|post-translational protein modification|proteolysis|STAT protein import into nucleus|tyrosine phosphorylation of STAT protein	cytosol|endoplasmic reticulum lumen|extracellular space|Golgi lumen|plasma membrane|soluble fraction	calcium ion binding|growth factor activity|serine-type endopeptidase activity|thrombospondin receptor activity			ovary(3)	3		all_lung(304;0.000414)|Lung NSC(402;0.0011)		BRCA - Breast invasive adenocarcinoma(625;0.146)	Antihemophilic Factor(DB00025)|Argatroban(DB00278)|Bivalirudin(DB00006)|Coagulation Factor IX(DB00100)|Drotrecogin alfa(DB00055)|Enoxaparin(DB01225)|Heparin(DB01109)|Lepirudin(DB00001)|Menadione(DB00170)|Proflavine(DB01123)|Simvastatin(DB00641)|Suramin(DB04786)|Warfarin(DB00682)|Ximelagatran(DB04898)	TCCCTGATCGGGGGCAGCAGT	0.642													14	43					0	0	0.001855	0	0
LRP4	4038	broad.mit.edu	37	11	46897410	46897410	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:46897410C>T	uc001ndn.3	-	26	3790	c.3644G>A	c.(3643-3645)GGA>GAA	p.G1215E		NM_002334	NP_002325	O75096	LRP4_HUMAN	low density lipoprotein receptor-related protein	1215	Extracellular (Potential).|LDL-receptor class B 13.				endocytosis|negative regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	integral to membrane	calcium ion binding|receptor activity			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4				Lung(87;0.159)		CACAGTCAGTCCATTGGGCCA	0.602													11	27					0	0	0.010729	0	0
LRP4	4038	broad.mit.edu	37	11	46921504	46921504	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:46921504C>T	uc001ndn.3	-	4	486	c.340G>A	c.(340-342)GAG>AAG	p.E114K	LRP4_uc009ylh.1_Missense_Mutation_p.E65K	NM_002334	NP_002325	O75096	LRP4_HUMAN	low density lipoprotein receptor-related protein	114	Extracellular (Potential).|LDL-receptor class A 3.				endocytosis|negative regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	integral to membrane	calcium ion binding|receptor activity			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4				Lung(87;0.159)		CAGGGAAACTCGTCCTCCTCA	0.617													10	41					0	0	0.008291	0	0
MADD	8567	broad.mit.edu	37	11	47330565	47330565	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:47330565G>A	uc001ner.1	+	26	4094	c.3903G>A	c.(3901-3903)GAG>GAA	p.E1301E	MADD_uc001neq.2_Intron|MADD_uc001nev.1_Intron|MADD_uc001nes.1_Intron|MADD_uc001net.1_Intron|MADD_uc009yln.1_Intron|MADD_uc001neu.1_Intron|MADD_uc001nex.2_Silent_p.E1301E|MADD_uc001nez.2_Intron|MADD_uc001new.2_Intron|MADD_uc009ylo.2_Silent_p.E215E	NM_003682	NP_003673	Q8WXG6	MADD_HUMAN	MAP-kinase activating death domain-containing	1301					activation of MAPK activity|apoptosis|cell surface receptor linked signaling pathway|regulation of apoptosis|regulation of cell cycle	cytoplasm|integral to membrane|plasma membrane	death receptor binding|protein kinase activator activity|Rab guanyl-nucleotide exchange factor activity			ovary(5)|skin(4)|central_nervous_system(2)	11				Lung(87;0.182)		ACCAGTTAGAGGATGCAGCTA	0.478													30	78					0	0	0.004289	0	0
SLC39A13	91252	broad.mit.edu	37	11	47435027	47435027	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:47435027C>T	uc009ylq.2	+	5	785	c.614C>T	c.(613-615)CCC>CTC	p.P205L	SLC39A13_uc001nfd.2_Missense_Mutation_p.P205L|SLC39A13_uc001nfe.1_RNA|SLC39A13_uc001nff.3_Missense_Mutation_p.P205L|SLC39A13_uc001nfg.3_Missense_Mutation_p.P205L	NM_001128225	NP_001121697	Q96H72	S39AD_HUMAN	solute carrier family 39 (zinc transporter),	205	Extracellular (Potential).				zinc ion transport	integral to membrane	metal ion transmembrane transporter activity				0				Lung(87;0.0936)		GCTGCAGAGCCCGGCCTCGGT	0.692													9	33					0	0	0.006214	0	0
PTPRJ	5795	broad.mit.edu	37	11	48158626	48158626	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:48158626G>A	uc001ngp.3	+	10	2300	c.1945G>A	c.(1945-1947)GAT>AAT	p.D649N	PTPRJ_uc010rhr.1_Missense_Mutation_p.D94N	NM_002843	NP_002834	Q12913	PTPRJ_HUMAN	protein tyrosine phosphatase, receptor type, J	649	Extracellular (Potential).|Fibronectin type-III 7.				contact inhibition|negative regulation of cell growth|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of MAP kinase activity|negative regulation of platelet-derived growth factor receptor signaling pathway|negative regulation of protein kinase B signaling cascade|negative regulation of T cell receptor signaling pathway|negative regulation of vascular permeability|platelet-derived growth factor receptor signaling pathway|positive chemotaxis|positive regulation of focal adhesion assembly|positive regulation of protein kinase B signaling cascade|positive regulation of survival gene product expression	cell surface|cell-cell junction|immunological synapse|integral to plasma membrane|ruffle membrane	beta-catenin binding|delta-catenin binding|gamma-catenin binding|mitogen-activated protein kinase binding|platelet-derived growth factor receptor binding|protein tyrosine phosphatase activity			breast(3)|kidney(3)|ovary(1)|skin(1)	8						GCAGAACTTTGATGACGCCTC	0.443													9	62					0	0	0.008291	0	0
OR4B1	119765	broad.mit.edu	37	11	48239224	48239224	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:48239224G>A	uc010rhs.1	+	1	863	c.863G>A	c.(862-864)AGG>AAG	p.R288K		NM_001005470	NP_001005470	Q8NGF8	OR4B1_HUMAN	olfactory receptor, family 4, subfamily B,	288	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)|pancreas(1)	4						TACACACTCAGGAATGCAGAG	0.438													14	33					0	0	0.002450	0	0
OR4X2	119764	broad.mit.edu	37	11	48267329	48267329	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:48267329G>A	uc001ngs.1	+	1	674	c.674G>A	c.(673-675)TGG>TAG	p.W225*		NM_001004727	NP_001004727	Q8NGF9	OR4X2_HUMAN	olfactory receptor, family 4, subfamily X,	225	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TCTGAAGGGTGGTGCAAAGCC	0.537													18	48					0	0	0.010504	0	0
OR4X2	119764	broad.mit.edu	37	11	48267363	48267363	+	Silent	SNP	C	T	T	rs144663280	byFrequency	TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:48267363C>T	uc001ngs.1	+	1	708	c.708C>T	c.(706-708)TTC>TTT	p.F236F		NM_001004727	NP_001004727	Q8NGF9	OR4X2_HUMAN	olfactory receptor, family 4, subfamily X,	236	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GGTCCCATTTCGCTGTGGTTA	0.522													14	23					0	0	0.002450	0	0
OR4X2	119764	broad.mit.edu	37	11	48267543	48267543	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:48267543G>A	uc001ngs.1	+	1	888	c.888G>A	c.(886-888)AGG>AGA	p.R296R		NM_001004727	NP_001004727	Q8NGF9	OR4X2_HUMAN	olfactory receptor, family 4, subfamily X,	296	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TGTGGATTAGGACATTGAGAC	0.433													16	49					0	0	0.007413	0	0
OR4S1	256148	broad.mit.edu	37	11	48328680	48328680	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:48328680C>T	uc010rhu.1	+	1	906	c.906C>T	c.(904-906)GTC>GTT	p.V302V		NM_001004725	NP_001004725	Q8NGB4	OR4S1_HUMAN	olfactory receptor, family 4, subfamily S,	302	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						TGTTTAGGGTCAAGAGGAGCT	0.418													13	15					0	0	0.001855	0	0
OR4C3	256144	broad.mit.edu	37	11	48346780	48346780	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:48346780C>T	uc010rhv.1	+	1	288	c.288C>T	c.(286-288)ACC>ACT	p.T96T		NM_001004702	NP_001004702	Q8NH37	OR4C3_HUMAN	olfactory receptor, family 4, subfamily C,	69	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TTATTGACACCTTTTATTCTT	0.478													7	99					0	0	0.001855	0	0
FOLH1	2346	broad.mit.edu	37	11	49204776	49204777	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:49204776_49204777CC>TT	uc001ngy.2	-	7	1105_1106	c.844_845GG>AA	c.(844-846)GGA>AAA	p.G282K	FOLH1_uc001ngz.2_Missense_Mutation_p.G282K|FOLH1_uc009yly.2_Missense_Mutation_p.G267K|FOLH1_uc009ylz.2_Missense_Mutation_p.G267K|FOLH1_uc009yma.2_5'UTR	NM_004476	NP_004467	Q04609	FOLH1_HUMAN	folate hydrolase 1 isoform 1	282	NAALADase.|Extracellular (Probable).				proteolysis	cytoplasm|integral to plasma membrane|membrane fraction|nucleus	carboxypeptidase activity|dipeptidase activity|metal ion binding|metallopeptidase activity			large_intestine(1)|ovary(1)|skin(1)	3					Capromab(DB00089)|L-Glutamic Acid(DB00142)	CTCTGCAATTCCACGCCTATAA	0.351													9	86					0	0	0.004672	0	0
LOC440040	440040	broad.mit.edu	37	11	49598031	49598031	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:49598031G>A	uc010rhy.1	+	2	622	c.144G>A	c.(142-144)AGG>AGA	p.R48R	LOC440040_uc009ymb.2_Silent_p.R48R	NR_027044				SubName: Full=cDNA FLJ60249, highly similar to Metabotropic glutamate receptor 5;												0						CCCTGGAAAGGATCAATTCAG	0.537													6	12					0	0	0.001984	0	0
LOC440040	440040	broad.mit.edu	37	11	49805603	49805603	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:49805603G>A	uc010rhy.1	+	3	1278	c.800G>A	c.(799-801)GGA>GAA	p.G267E	LOC440040_uc009ymb.2_Missense_Mutation_p.G267E	NR_027044				SubName: Full=cDNA FLJ60249, highly similar to Metabotropic glutamate receptor 5;												0						GGTCTAGTGGGAGAATTTCTG	0.512													14	31					0	0	0.004007	0	0
OR4C46	119749	broad.mit.edu	37	11	51515947	51515947	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:51515947C>T	uc010ric.1	+	1	666	c.666C>T	c.(664-666)TCC>TCT	p.S222S		NM_001004703	NP_001004703	A6NHA9	O4C46_HUMAN	olfactory receptor, family 4, subfamily C,	222	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						TCTTGTGCTCCCTAAGGACTC	0.488													22	36					0	0	0.010504	0	0
OR4C15	81309	broad.mit.edu	37	11	55321940	55321940	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:55321940G>A	uc010rig.1	+	1	158	c.158G>A	c.(157-159)GGA>GAA	p.G53E		NM_001001920	NP_001001920	Q8NGM1	OR4CF_HUMAN	olfactory receptor, family 4, subfamily C,	Error:Variant_position_missing_in_Q8NGM1_after_alignment					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						TTTTCCTTGGGAAACATGCAA	0.358										HNSCC(20;0.049)			29	83					0	0	0.012213	0	0
OR4C15	81309	broad.mit.edu	37	11	55322605	55322605	+	Silent	SNP	T	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:55322605T>C	uc010rig.1	+	1	823	c.823T>C	c.(823-825)TTG>CTG	p.L275L		NM_001001920	NP_001001920	Q8NGM1	OR4CF_HUMAN	olfactory receptor, family 4, subfamily C,	221	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						TGCTGTCATCTTGCTCTCTCT	0.463										HNSCC(20;0.049)			30	91					0	0	0.010818	0	0
OR4C15	81309	broad.mit.edu	37	11	55322720	55322720	+	Missense_Mutation	SNP	G	A	A	rs149965163		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:55322720G>A	uc010rig.1	+	1	938	c.938G>A	c.(937-939)CGA>CAA	p.R313Q		NM_001001920	NP_001001920	Q8NGM1	OR4CF_HUMAN	olfactory receptor, family 4, subfamily C,	259	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						GTATATACACGACCTCCATCT	0.403										HNSCC(20;0.049)			63	96					0	0	0.014410	0	0
OR4P4	81300	broad.mit.edu	37	11	55405880	55405880	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:55405880C>T	uc010rij.1	+	1	47	c.47C>T	c.(46-48)TCC>TTC	p.S16F		NM_001004124	NP_001004124	Q8NGL7	OR4P4_HUMAN	olfactory receptor, family 4, subfamily P,	16	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1						TTGGGGTTTTCCCAAAATAAG	0.328													11	143					0	0	0.002450	0	0
OR4C6	219432	broad.mit.edu	37	11	55433219	55433219	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:55433219C>T	uc001nht.3	+	3	842	c.577C>T	c.(577-579)CTG>TTG	p.L193L	OR4C6_uc010rik.1_Silent_p.L193L	NM_001004704	NP_001004704	Q8NH72	OR4C6_HUMAN	olfactory receptor, family 4, subfamily C,	193	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2						CACCCACATCCTGGGCCTCTT	0.438													21	52					0	0	0.010504	0	0
OR5D16	390144	broad.mit.edu	37	11	55606305	55606305	+	Missense_Mutation	SNP	A	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:55606305A>C	uc010rio.1	+	1	78	c.78A>C	c.(76-78)CAA>CAC	p.Q26H		NM_001005496	NP_001005496	Q8NGK9	OR5DG_HUMAN	olfactory receptor, family 5, subfamily D,	26	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)|skin(1)	5		all_epithelial(135;0.208)				TGGAACTGCAAATTCCCCTCT	0.433													36	47					0	0	0.005524	0	0
SPRYD5	84767	broad.mit.edu	37	11	55653172	55653172	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:55653172G>A	uc010rip.1	+	2	360	c.268G>A	c.(268-270)GAG>AAG	p.E90K	SPRYD5_uc010riq.1_5'Flank	NM_032681	NP_116070	Q9BSJ1	SPRY5_HUMAN	SPRY domain containing 5	90	B box-type.					intracellular	zinc ion binding				0		all_epithelial(135;0.226)				TAGCTCTGAGGAGCAAATATG	0.493													9	11					0	0	0.006214	0	0
OR5I1	10798	broad.mit.edu	37	11	55703403	55703403	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:55703403G>A	uc010ris.1	-	1	474	c.474C>T	c.(472-474)TCC>TCT	p.S158S		NM_006637	NP_006628	Q13606	OR5I1_HUMAN	olfactory receptor, family 5, subfamily I,	158	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						TGTGAACCAGGGAACTCATGT	0.413													7	51					0	0	0.003080	0	0
OR10AG1	282770	broad.mit.edu	37	11	55735094	55735094	+	Silent	SNP	G	A	A	rs139711848		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:55735094G>A	uc010rit.1	-	1	846	c.846C>T	c.(844-846)ACC>ACT	p.T282T		NM_001005491	NP_001005491	Q8NH19	O10AG_HUMAN	olfactory receptor, family 10, subfamily AG,	282	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Esophageal squamous(21;0.0137)					TGTTCCTCAGGGTATATATAA	0.328													20	22					0	0	0.008871	0	0
OR10AG1	282770	broad.mit.edu	37	11	55735475	55735475	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:55735475G>A	uc010rit.1	-	1	465	c.465C>T	c.(463-465)TTC>TTT	p.F155F		NM_001005491	NP_001005491	Q8NH19	O10AG_HUMAN	olfactory receptor, family 10, subfamily AG,	155	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Esophageal squamous(21;0.0137)					AGGGCAAAAGGAAAATTTGGC	0.388													9	37					0	0	0.006214	0	0
OR10AG1	282770	broad.mit.edu	37	11	55735698	55735698	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:55735698C>T	uc010rit.1	-	1	242	c.242G>A	c.(241-243)GGA>GAA	p.G81E		NM_001005491	NP_001005491	Q8NH19	O10AG_HUMAN	olfactory receptor, family 10, subfamily AG,	81	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Esophageal squamous(21;0.0137)					AGAAATATTTCCTTTCTGAGT	0.383													15	36					0	0	0.004990	0	0
OR5F1	338674	broad.mit.edu	37	11	55761292	55761292	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:55761292C>T	uc010riv.1	-	1	810	c.810G>A	c.(808-810)CAG>CAA	p.Q270Q		NM_003697	NP_003688	O95221	OR5F1_HUMAN	olfactory receptor, family 5, subfamily F,	270	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)	2	Esophageal squamous(21;0.00448)					CCACTTTGTCCTGATTCAGGG	0.468													26	57					0	0	0.004656	0	0
OR5AS1	219447	broad.mit.edu	37	11	55798094	55798094	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:55798094C>T	uc010riw.1	+	1	200	c.200C>T	c.(199-201)TCT>TTT	p.S67F		NM_001001921	NP_001001921	Q8N127	O5AS1_HUMAN	olfactory receptor, family 5, subfamily AS,	67	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|liver(1)|skin(1)	5	Esophageal squamous(21;0.00693)					AGCAACTTATCTTTCTTAGAC	0.343													12	35					0	0	0.010729	0	0
OR8I2	120586	broad.mit.edu	37	11	55860916	55860916	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:55860916C>T	uc010rix.1	+	1	133	c.133C>T	c.(133-135)CTG>TTG	p.L45L		NM_001003750	NP_001003750	Q8N0Y5	OR8I2_HUMAN	olfactory receptor, family 8, subfamily I,	45	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1	Esophageal squamous(21;0.00693)					AAACCTGGGACTGATCACGTT	0.373													43	89					0	0	0.014410	0	0
OR8I2	120586	broad.mit.edu	37	11	55861551	55861551	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:55861551C>T	uc010rix.1	+	1	768	c.768C>T	c.(766-768)TTC>TTT	p.F256F		NM_001003750	NP_001003750	Q8N0Y5	OR8I2_HUMAN	olfactory receptor, family 8, subfamily I,	256	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1	Esophageal squamous(21;0.00693)					CTCTGATTTTCACCTATTTGC	0.498													22	73					0	0	0.002780	0	0
OR8K5	219453	broad.mit.edu	37	11	55927621	55927621	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:55927621G>A	uc010rja.1	-	1	173	c.173C>T	c.(172-174)CCT>CTT	p.P58L		NM_001004058	NP_001004058	Q8NH50	OR8K5_HUMAN	olfactory receptor, family 8, subfamily K,	58	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|skin(1)	4	Esophageal squamous(21;0.00693)	Lung NSC(402;0.197)|all_epithelial(135;0.236)				AAAGTACATAGGTGTATGTAA	0.403													21	31					0	0	0.014323	0	0
OR5T1	390155	broad.mit.edu	37	11	56043514	56043514	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:56043514C>T	uc001nio.1	+	1	400	c.400C>T	c.(400-402)CGC>TGC	p.R134C		NM_001004745	NP_001004745	Q8NG75	OR5T1_HUMAN	olfactory receptor, family 5, subfamily T,	134	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)	3	Esophageal squamous(21;0.00448)					GGCTTATGATCGCTATGTAGC	0.413													41	113					0	0	0.010771	0	0
OR5T1	390155	broad.mit.edu	37	11	56043562	56043563	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:56043562_56043563CC>TT	uc001nio.1	+	1	448_449	c.448_449CC>TT	c.(448-450)CCC>TTC	p.P150F		NM_001004745	NP_001004745	Q8NG75	OR5T1_HUMAN	olfactory receptor, family 5, subfamily T,	150	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)	3	Esophageal squamous(21;0.00448)					GAGCATGTCACCCAGAGTCTAT	0.446													54	125					0	0	0.004672	0	0
OR8H1	219469	broad.mit.edu	37	11	56058264	56058264	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:56058264G>A	uc010rje.1	-	1	275	c.275C>T	c.(274-276)TCC>TTC	p.S92F		NM_001005199	NP_001005199	Q8NGG4	OR8H1_HUMAN	olfactory receptor, family 8, subfamily H,	92	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3	Esophageal squamous(21;0.00448)					GCCCATGAAGGAAATATAGTT	0.398													56	123					0	0	0.014410	0	0
OR8H1	219469	broad.mit.edu	37	11	56058404	56058404	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:56058404C>T	uc010rje.1	-	1	135	c.135G>A	c.(133-135)ATG>ATA	p.M45I		NM_001005199	NP_001005199	Q8NGG4	OR8H1_HUMAN	olfactory receptor, family 8, subfamily H,	45	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3	Esophageal squamous(21;0.00448)					TTATCAATATCATCCCCACAT	0.428													52	98					0	0	0.014410	0	0
OR8K3	219473	broad.mit.edu	37	11	56085818	56085818	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:56085818C>T	uc010rjf.1	+	1	36	c.36C>T	c.(34-36)TTC>TTT	p.F12F		NM_001005202	NP_001005202	Q8NH51	OR8K3_HUMAN	olfactory receptor, family 8, subfamily K,	12	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|large_intestine(1)|central_nervous_system(1)	4	Esophageal squamous(21;0.00448)					TGAATGAATTCATTCTTACGG	0.413													20	55					0	0	0.008871	0	0
OR8K3	219473	broad.mit.edu	37	11	56086445	56086445	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:56086445C>T	uc010rjf.1	+	1	663	c.663C>T	c.(661-663)ATC>ATT	p.I221I		NM_001005202	NP_001005202	Q8NH51	OR8K3_HUMAN	olfactory receptor, family 8, subfamily K,	221	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|large_intestine(1)|central_nervous_system(1)	4	Esophageal squamous(21;0.00448)					ACCTGCTCATCCTTGTAGCCA	0.388													12	26					0	0	0.001855	0	0
OR8J1	219477	broad.mit.edu	37	11	56128269	56128269	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:56128269C>T	uc010rjh.1	+	1	547	c.547C>T	c.(547-549)CCT>TCT	p.P183S		NM_001005205	NP_001005205	Q8NGP2	OR8J1_HUMAN	olfactory receptor, family 8, subfamily J,	183	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00448)					TGATAATGTTCCTCTGTTAGC	0.338													11	34					0	0	0.008291	0	0
OR5M9	390162	broad.mit.edu	37	11	56230593	56230593	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:56230593G>A	uc010rjj.1	-	1	285	c.285C>T	c.(283-285)TGC>TGT	p.C95C		NM_001004743	NP_001004743	Q8NGP3	OR5M9_HUMAN	olfactory receptor, family 5, subfamily M,	95	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4	Esophageal squamous(21;0.00448)					ACTGCACCAAGCATCCCACAT	0.493													28	41					0	0	0.013726	0	0
OR5M8	219484	broad.mit.edu	37	11	56258736	56258736	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:56258736C>T	uc001nix.1	-	1	111	c.111G>A	c.(109-111)ACG>ACA	p.T37T		NM_001005282	NP_001005282	Q8NGP6	OR5M8_HUMAN	olfactory receptor, family 5, subfamily M,	37	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	Esophageal squamous(21;0.00352)					TCCCTGCCACCGTGACCATGT	0.522													27	71					0	0	0.007291	0	0
OR5M11	219487	broad.mit.edu	37	11	56310459	56310459	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:56310459G>A	uc010rjl.1	-	1	275	c.275C>T	c.(274-276)TCC>TTC	p.S92F		NM_001005245	NP_001005245	Q96RB7	OR5MB_HUMAN	olfactory receptor, family 5, subfamily M,	92	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						ACCAGCAAAGGAAATGGTCTT	0.433													17	26					0	0	0.006122	0	0
OR5M10	390167	broad.mit.edu	37	11	56344834	56344834	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:56344834G>A	uc001niz.1	-	1	364	c.364C>T	c.(364-366)CGC>TGC	p.R122C		NM_001004741	NP_001004741	Q6IEU7	OR5MA_HUMAN	olfactory receptor, family 5, subfamily M,	122	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GCTACATAGCGATCCAATGCC	0.453													12	48					0	0	0.010729	0	0
OR5AK2	390181	broad.mit.edu	37	11	56756661	56756661	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:56756661G>A	uc010rjp.1	+	1	273	c.273G>A	c.(271-273)TTG>TTA	p.L91L		NM_001005323	NP_001005323	Q8NH90	O5AK2_HUMAN	olfactory receptor, family 5, subfamily AK,	91	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3						AAAAGAATTTGATGTTATTTC	0.383													12	44					0	0	0.013537	0	0
LRRC55	219527	broad.mit.edu	37	11	56949566	56949566	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:56949566C>T	uc001njl.1	+	1	346	c.199C>T	c.(199-201)CTC>TTC	p.L67F		NM_001005210	NP_001005210	Q6ZSA7	LRC55_HUMAN	leucine rich repeat containing 55	37						integral to membrane					0						GATCTCCCTCCTCTTGGCAGC	0.632													10	22					0	0	0.010729	0	0
APLNR	187	broad.mit.edu	37	11	57003729	57003729	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:57003729G>A	uc001njo.2	-	1	1199	c.750C>T	c.(748-750)ATC>ATT	p.I250I	APLNR_uc001njn.3_RNA	NM_005161	NP_005152	P35414	APJ_HUMAN	apelin receptor	250	Helical; Name=6; (Potential).					integral to plasma membrane	G-protein coupled receptor activity			lung(5)|ovary(1)	6						CCAGCACCACGATGATGCTGA	0.612													7	20					0	0	0.001984	0	0
OR6Q1	219952	broad.mit.edu	37	11	57799015	57799015	+	Silent	SNP	T	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:57799015T>G	uc010rjz.1	+	1	591	c.591T>G	c.(589-591)ACT>ACG	p.T197T	OR9Q1_uc001nmj.2_Intron	NM_001005186	NP_001005186	Q8NGQ2	OR6Q1_HUMAN	olfactory receptor, family 6, subfamily Q,	197	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			kidney(1)	1		Breast(21;0.0707)|all_epithelial(135;0.142)				CAGATGTCACTTGGAAGGAGA	0.502													4	128					0	0	0.000602	0	0
OR9I1	219954	broad.mit.edu	37	11	57886005	57886005	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:57886005G>A	uc001nml.1	-	1	912	c.912C>T	c.(910-912)GTC>GTT	p.V304V	OR9Q1_uc001nmj.2_Intron	NM_001005211	NP_001005211	Q8NGQ6	OR9I1_HUMAN	olfactory receptor, family 9, subfamily I,	304	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.V304V(1)		pancreas(1)	1		Breast(21;0.0589)				GTCTCCTAGCGACCTTTCTGA	0.428													51	83					0	0	0.014410	0	0
OR1S2	219958	broad.mit.edu	37	11	57971493	57971493	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:57971493C>T	uc010rkb.1	-	1	161	c.161G>A	c.(160-162)GGG>GAG	p.G54E		NM_001004459	NP_001004459	Q8NGQ3	OR1S2_HUMAN	olfactory receptor, family 1, subfamily S,	54	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.0589)				GAGCCCGTTCCCAACCACAGT	0.458													23	48					0	0	0.002780	0	0
OR1S1	219959	broad.mit.edu	37	11	57982705	57982705	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:57982705C>T	uc010rkc.1	+	1	489	c.489C>T	c.(487-489)TTC>TTT	p.F163F		NM_001004458	NP_001004458	Q8NH92	OR1S1_HUMAN	olfactory receptor, family 1, subfamily S,	163	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Breast(21;0.0589)				TCTCATGGTTCCTCAGTAATA	0.483													20	171					0	0	0.003330	0	0
OR5B2	390190	broad.mit.edu	37	11	58190485	58190485	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:58190485G>A	uc010rkg.1	-	1	250	c.250C>T	c.(250-252)CTT>TTT	p.L84F		NM_001005566	NP_001005566	Q96R09	OR5B2_HUMAN	olfactory receptor, family 5, subfamily B,	84	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				TCTCCTCTAAGGAACCCAGCC	0.493													33	60					0	0	0.004289	0	0
OR5B2	390190	broad.mit.edu	37	11	58190555	58190555	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:58190555G>A	uc010rkg.1	-	1	180	c.180C>T	c.(178-180)TTC>TTT	p.F60F		NM_001005566	NP_001005566	Q96R09	OR5B2_HUMAN	olfactory receptor, family 5, subfamily B,	60	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				GGTTACTGAGGAAAAAGTACA	0.502													22	36					0	0	0.014323	0	0
OR5B12	390191	broad.mit.edu	37	11	58207496	58207496	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:58207496C>T	uc010rkh.1	-	1	129	c.129G>A	c.(127-129)ATG>ATA	p.M43I		NM_001004733	NP_001004733	Q96R08	OR5BC_HUMAN	olfactory receptor, family 5, subfamily B,	43	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				TCAATTCAATCATCCCCAGGT	0.483													12	32					0	0	0.013537	0	0
GLYAT	10249	broad.mit.edu	37	11	58477456	58477456	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:58477456G>A	uc001nnb.2	-	6	829	c.674C>T	c.(673-675)ACT>ATT	p.T225I		NM_201648	NP_964011	Q6IB77	GLYAT_HUMAN	glycine-N-acyltransferase isoform a	225					acyl-CoA metabolic process|response to toxin|xenobiotic metabolic process	mitochondrial matrix	glycine N-acyltransferase activity|glycine N-benzoyltransferase activity				0		Breast(21;0.0044)|all_epithelial(135;0.0157)			Glycine(DB00145)	CATCTCTCCAGTCTGGTCCAT	0.562													12	44					0	0	0.013537	0	0
GLYATL1	92292	broad.mit.edu	37	11	58723398	58723398	+	Missense_Mutation	SNP	A	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:58723398A>T	uc001nnf.2	+	8	1183	c.807A>T	c.(805-807)GAA>GAT	p.E269D	uc001nng.1_Intron|GLYATL1_uc001nnh.1_Missense_Mutation_p.E300D|GLYATL1_uc001nni.1_Missense_Mutation_p.E269D|GLYATL1_uc001nnj.1_Missense_Mutation_p.E269D			Q969I3	GLYL1_HUMAN	SubName: Full=Glycine acyltransferase family-C; SubName: Full=Glycine-N-acyltransferase-like 1, isoform CRA_a;	269						mitochondrion	glycine N-acyltransferase activity			ovary(1)	1					Glycine(DB00145)	TGTTGGAAGAAAATGAAGACT	0.443													14	38					0	0	0.003163	0	0
OR5A1	219982	broad.mit.edu	37	11	59211293	59211293	+	Missense_Mutation	SNP	C	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:59211293C>A	uc001nnx.1	+	1	652	c.652C>A	c.(652-654)CTT>ATT	p.L218I		NM_001004728	NP_001004728	Q8NGJ0	OR5A1_HUMAN	olfactory receptor, family 5, subfamily A,	218	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)	2						CCTCCAACTCCTTATCTCCTA	0.542													40	86					5.43694e-19	5.8757e-19	0.005524	1	0
OR4D6	219983	broad.mit.edu	37	11	59224646	59224646	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:59224646C>T	uc010rku.1	+	1	213	c.213C>T	c.(211-213)ATC>ATT	p.I71I		NM_001004708	NP_001004708	Q8NGJ1	OR4D6_HUMAN	olfactory receptor, family 4, subfamily D,	71	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						TCCTGGACATCGTTTTTTCAT	0.463													34	50					0	0	0.013726	0	0
OR4D10	390197	broad.mit.edu	37	11	59244992	59244992	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:59244992C>T	uc001nnz.1	+	1	90	c.90C>T	c.(88-90)TTC>TTT	p.F30F		NM_001004705	NP_001004705	Q8NGI6	OR4DA_HUMAN	olfactory receptor, family 4, subfamily D,	30	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3						TATTTCTTTTCCTACTCTTGG	0.438													22	89					0	0	0.014323	0	0
OR4D11	219986	broad.mit.edu	37	11	59271645	59271645	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:59271645G>A	uc001noa.1	+	1	597	c.597G>A	c.(595-597)ATG>ATA	p.M199I		NM_001004706	NP_001004706	Q8NGI4	OR4DB_HUMAN	olfactory receptor, family 4, subfamily D,	199	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						AGTTCTTGATGATTTCCAACA	0.498													14	106					0	0	0.002450	0	0
OR4D11	219986	broad.mit.edu	37	11	59271963	59271963	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:59271963C>T	uc001noa.1	+	1	915	c.915C>T	c.(913-915)CTC>CTT	p.L305L		NM_001004706	NP_001004706	Q8NGI4	OR4DB_HUMAN	olfactory receptor, family 4, subfamily D,	305	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						AGAGAAGACTCGTGCCTTCTG	0.308													13	19					0	0	0.013537	0	0
OR10V1	390201	broad.mit.edu	37	11	59481007	59481007	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:59481007G>A	uc001nof.1	-	1	312	c.312C>T	c.(310-312)TTC>TTT	p.F104F		NM_001005324	NP_001005324	Q8NGI7	O10V1_HUMAN	olfactory receptor, family 10, subfamily V,	104	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						AGAAGACAAAGAAAAACATCT	0.483													12	25					0	0	0.013537	0	0
MS4A10	341116	broad.mit.edu	37	11	60559775	60559775	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:60559775C>T	uc001npz.1	+	4	437	c.341C>T	c.(340-342)ACC>ATC	p.T114I		NM_206893	NP_996776	Q96PG2	M4A10_HUMAN	membrane-spanning 4-domains, subfamily A, member	114	Cytoplasmic (Potential).					integral to membrane	receptor activity			ovary(1)|skin(1)	2						ACAATGAAGACCTTTTCTAAA	0.443													36	97					0	0	0.009718	0	0
TMEM132A	54972	broad.mit.edu	37	11	60694698	60694698	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:60694698G>A	uc001nqj.2	+	2	316	c.123G>A	c.(121-123)CTG>CTA	p.L41L	TMEM132A_uc001nqi.2_Silent_p.L41L|TMEM132A_uc001nqk.2_Silent_p.L54L|TMEM132A_uc001nql.1_Silent_p.L54L	NM_178031	NP_821174	Q24JP5	T132A_HUMAN	transmembrane protein 132A isoform b	41	Extracellular (Potential).					endoplasmic reticulum membrane|Golgi membrane|integral to membrane				skin(1)	1						AGGCTCCCCTGGACCCTGTCT	0.637													41	57					0	0	0.013114	0	0
TMEM132A	54972	broad.mit.edu	37	11	60699489	60699489	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:60699489G>A	uc001nqj.2	+	7	1439	c.1246G>A	c.(1246-1248)GGA>AGA	p.G416R	TMEM132A_uc001nqi.2_Missense_Mutation_p.G417R|TMEM132A_uc001nqk.2_Missense_Mutation_p.G429R|TMEM132A_uc001nql.1_3'UTR|TMEM132A_uc001nqm.2_5'Flank	NM_178031	NP_821174	Q24JP5	T132A_HUMAN	transmembrane protein 132A isoform b	416	Extracellular (Potential).					endoplasmic reticulum membrane|Golgi membrane|integral to membrane				skin(1)	1						ACCACTGACTGGAGTGCCCCA	0.662													25	33					0	0	0.003330	0	0
CD6	923	broad.mit.edu	37	11	60777153	60777153	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:60777153G>A	uc001nqq.2	+	5	1114	c.891G>A	c.(889-891)TCG>TCA	p.S297S	CD6_uc009yni.2_Intron|CD6_uc009ynj.2_Intron|CD6_uc001nqp.2_Silent_p.S297S|CD6_uc001nqr.2_Silent_p.S297S|CD6_uc001nqs.2_RNA|CD6_uc001nqt.2_Silent_p.S297S	NM_006725	NP_006716	P30203	CD6_HUMAN	CD6 molecule precursor	297	SRCR 3.|Extracellular (Potential).				cell adhesion	cell surface|integral to plasma membrane	scavenger receptor activity			pancreas(1)	1						GGTACCCATCGGAGGCCAAGG	0.637													15	36					0	0	0.002450	0	0
VWCE	220001	broad.mit.edu	37	11	61048587	61048587	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:61048587G>A	uc001nra.2	-	8	1187	c.908C>T	c.(907-909)CCT>CTT	p.P303L	VWCE_uc001nrb.2_RNA	NM_152718	NP_689931	Q96DN2	VWCE_HUMAN	von Willebrand factor C and EGF domains	303						extracellular region	calcium ion binding			ovary(1)	1						AGCCCCAGAAGGAGGGCTATG	0.677													24	32					0	0	0.003330	0	0
SCGB1D1	10648	broad.mit.edu	37	11	61960872	61960872	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:61960872G>A	uc001nsz.1	+	3	292	c.245G>A	c.(244-246)GGA>GAA	p.G82E		NM_006552	NP_006543	O95968	SG1D1_HUMAN	lipophilin A precursor	82						extracellular space	binding	p.G82R(1)		skin(1)	1						CTATTTCAGGGAAAAATAGCA	0.413													9	15					0	0	0.010729	0	0
SCGB1D2	10647	broad.mit.edu	37	11	62010826	62010826	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:62010826C>T	uc001ntb.2	+	2	177	c.121C>T	c.(121-123)CTG>TTG	p.L41L		NM_006551	NP_006542	O95969	SG1D2_HUMAN	lipophilin B precursor	41						extracellular space	binding				0						TAGTGAACCTCTGTTCAAGTT	0.443													23	46					0	0	0.004656	0	0
BSCL2	26580	broad.mit.edu	37	11	62458112	62458112	+	Silent	SNP	T	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:62458112T>C	uc001nuo.1	-	10	1438	c.1014A>G	c.(1012-1014)GAA>GAG	p.E338E	LRRN4CL_uc001nun.2_5'Flank|BSCL2_uc009yoc.1_3'UTR|BSCL2_uc001nup.2_Silent_p.E338E|BSCL2_uc001nuq.1_Silent_p.E338E|BSCL2_uc001nur.3_Silent_p.E402E|BSCL2_uc009yod.2_Silent_p.E402E|BSCL2_uc001nut.3_Silent_p.E404E|HNRNPUL2_uc001nuu.1_RNA	NM_032667	NP_116056	Q96G97	BSCL2_HUMAN	seipin isoform 2	338	Cytoplasmic (Potential).				cell death	integral to endoplasmic reticulum membrane					0						CTAGCTCCTCTTCTCCGCTCA	0.572													22	115					0	0	0.003330	0	0
GNG3	2785	broad.mit.edu	37	11	62476263	62476263	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:62476263C>T	uc001nuv.2	+	3	488	c.213C>T	c.(211-213)TTC>TTT	p.F71F	BSCL2_uc001nuo.1_5'Flank|BSCL2_uc009yoc.1_5'Flank|BSCL2_uc001nup.2_5'Flank|BSCL2_uc001nuq.1_5'Flank|BSCL2_uc001nur.3_5'Flank|BSCL2_uc009yod.2_Intron|BSCL2_uc001nut.3_Intron|HNRNPUL2_uc001nuu.1_Intron	NM_012202	NP_036334	P63215	GBG3_HUMAN	guanine nucleotide binding protein (G protein),	71					activation of MAPK activity|cellular response to glucagon stimulus|energy reserve metabolic process|synaptic transmission		GTPase activity|signal transducer activity				0						AGAAGTTCTTCTGTGCTCTCC	0.567													27	50					0	0	0.006320	0	0
ZBTB3	79842	broad.mit.edu	37	11	62520741	62520741	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:62520741C>T	uc001nuz.2	-	2	668	c.546G>A	c.(544-546)AAG>AAA	p.K182K		NM_024784	NP_079060	Q9H5J0	ZBTB3_HUMAN	zinc finger and BTB domain containing 3	182					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(2)|ovary(1)	3						TTTCCTCCTCCTTCTTGGTAC	0.547													35	81					0	0	0.006230	0	0
SLC22A6	9356	broad.mit.edu	37	11	62752125	62752125	+	Missense_Mutation	SNP	A	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:62752125A>C	uc001nwk.2	-	1	345	c.38T>G	c.(37-39)GTC>GGC	p.V13G	SLC22A6_uc001nwl.2_Missense_Mutation_p.V13G|SLC22A6_uc001nwj.2_Missense_Mutation_p.V13G|SLC22A6_uc001nwm.2_Missense_Mutation_p.V13G	NM_004790	NP_004781	Q4U2R8	S22A6_HUMAN	solute carrier family 22 member 6 isoform a	13	Helical; (Potential).				alpha-ketoglutarate transport	basolateral plasma membrane|integral to plasma membrane|membrane fraction	inorganic anion exchanger activity|protein binding				0						GAAGCGGCCGACACCCCCCAC	0.637													7	16					0	0	0.006214	0	0
SLC22A8	9376	broad.mit.edu	37	11	62766395	62766395	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:62766395G>A	uc001nwo.2	-	5	895	c.759C>T	c.(757-759)TCC>TCT	p.S253S	SLC22A8_uc001nwn.1_Silent_p.S44S|SLC22A8_uc001nwp.2_Silent_p.S253S|SLC22A8_uc009yom.2_Silent_p.S130S|SLC22A8_uc010rmm.1_Silent_p.S162S|SLC22A8_uc009yon.2_Silent_p.S253S	NM_004254	NP_004245	Q8TCC7	S22A8_HUMAN	solute carrier family 22 member 8	253	Helical; (Potential).				response to toxin	basolateral plasma membrane|integral to plasma membrane|membrane fraction	inorganic anion exchanger activity|organic anion transmembrane transporter activity			skin(2)|ovary(1)	3						CCACATACCAGGATGATAGGA	0.592													9	35					0	0	0.010729	0	0
SLC22A8	9376	broad.mit.edu	37	11	62766457	62766457	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:62766457G>A	uc001nwo.2	-	5	833	c.697C>T	c.(697-699)CCC>TCC	p.P233S	SLC22A8_uc001nwn.1_Missense_Mutation_p.P24S|SLC22A8_uc001nwp.2_Missense_Mutation_p.P233S|SLC22A8_uc009yom.2_Missense_Mutation_p.P110S|SLC22A8_uc010rmm.1_Missense_Mutation_p.P142S|SLC22A8_uc009yon.2_Missense_Mutation_p.P233S	NM_004254	NP_004245	Q8TCC7	S22A8_HUMAN	solute carrier family 22 member 8	233	Helical; (Potential).				response to toxin	basolateral plasma membrane|integral to plasma membrane|membrane fraction	inorganic anion exchanger activity|organic anion transmembrane transporter activity			skin(2)|ovary(1)	3						CGCCACTGGGGGATGGCGTAG	0.567													8	40					0	0	0.004482	0	0
SLC22A8	9376	broad.mit.edu	37	11	62782234	62782234	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:62782234G>A	uc001nwo.2	-	2	333	c.197C>T	c.(196-198)CCA>CTA	p.P66L	SLC22A8_uc001nwp.2_Missense_Mutation_p.P66L|SLC22A8_uc009yom.2_Intron|SLC22A8_uc010rmm.1_Intron|SLC22A8_uc009yon.2_Missense_Mutation_p.P66L	NM_004254	NP_004245	Q8TCC7	S22A8_HUMAN	solute carrier family 22 member 8	66	Extracellular (Potential).				response to toxin	basolateral plasma membrane|integral to plasma membrane|membrane fraction	inorganic anion exchanger activity|organic anion transmembrane transporter activity			skin(2)|ovary(1)	3						CTTCCCATTTGGGCCCATGGG	0.632													80	113					0	0	0.014410	0	0
SLC22A10	387775	broad.mit.edu	37	11	63067087	63067087	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:63067087C>T	uc009yor.2	+	6	1264	c.1056C>T	c.(1054-1056)ATC>ATT	p.I352I	SLC22A10_uc010rmo.1_RNA|SLC22A10_uc001nwu.3_RNA|SLC22A10_uc010rmp.1_Silent_p.I192I	NM_001039752	NP_001034841	Q63ZE4	S22AA_HUMAN	solute carrier family 22, member 10	352	Helical; (Potential).					integral to membrane	transmembrane transporter activity			ovary(2)	2						GGATCTGTATCCTGGTATTTT	0.408													13	17					0	0	0.001855	0	0
SLC22A10	387775	broad.mit.edu	37	11	63072291	63072291	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:63072291C>T	uc009yor.2	+	9	1736	c.1528C>T	c.(1528-1530)CTT>TTT	p.L510F	SLC22A10_uc010rmo.1_Intron|SLC22A10_uc001nwu.3_RNA|SLC22A10_uc010rmp.1_3'UTR	NM_001039752	NP_001034841	Q63ZE4	S22AA_HUMAN	solute carrier family 22, member 10	510	Helical; (Potential).					integral to membrane	transmembrane transporter activity			ovary(2)	2						CATTGGTGGCCTTATTGTCTT	0.448													27	55					0	0	0.006320	0	0
SLC22A10	387775	broad.mit.edu	37	11	63078499	63078499	+	Missense_Mutation	SNP	A	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:63078499A>T	uc009yor.2	+	10	1827	c.1619A>T	c.(1618-1620)AAG>ATG	p.K540M	SLC22A10_uc010rmo.1_Intron|SLC22A10_uc001nwu.3_RNA	NM_001039752	NP_001034841	Q63ZE4	S22AA_HUMAN	solute carrier family 22, member 10	540	Extracellular (Potential).					integral to membrane	transmembrane transporter activity			ovary(2)	2						CTCAAGGAAAAGGCATAAAAA	0.234													13	56					0	0	0.002450	0	0
SLC22A9	114571	broad.mit.edu	37	11	63137682	63137682	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:63137682C>T	uc001nww.2	+	1	422	c.154C>T	c.(154-156)CAC>TAC	p.H52Y	SLC22A9_uc001nwx.2_RNA	NM_080866	NP_543142	Q8IVM8	S22A9_HUMAN	solute carrier family 22 (organic anion/cation	52	Extracellular (Potential).				transmembrane transport	integral to membrane				breast(2)|large_intestine(1)	3						CTGCTGGGTCCACATCCTGGA	0.488													44	123					0	0	0.014410	0	0
HRASLS5	117245	broad.mit.edu	37	11	63230976	63230976	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:63230976C>T	uc001nwy.2	-	6	1013	c.839G>A	c.(838-840)TGA>TAA	p.*280*	HRASLS5_uc001nwz.2_Silent_p.*270*|HRASLS5_uc010rmq.1_3'UTR|HRASLS5_uc009yos.2_RNA	NM_054108	NP_473449	Q96KN8	HRSL5_HUMAN	HRAS-like suppressor family, member 5 isoform 1	280										ovary(1)	1						TCATCACCTTCAGGCAGTTAT	0.468													33	134					0	0	0.005524	0	0
HRASLS2	54979	broad.mit.edu	37	11	63326003	63326003	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:63326003C>T	uc001nxg.1	-	3	307	c.248G>A	c.(247-249)AGA>AAA	p.R83K		NM_017878	NP_060348	Q9NWW9	HRSL2_HUMAN	HRAS-like suppressor 2	83					lipid catabolic process	cytoplasm	acyltransferase activity|hydrolase activity				0						TGGTGTGTATCTGTCATCGTG	0.532													20	67					0	0	0.014323	0	0
MARK2	2011	broad.mit.edu	37	11	63676485	63676485	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:63676485C>T	uc001nxw.2	+	19	2722	c.2143C>T	c.(2143-2145)CGC>TGC	p.R715C	MARK2_uc001nxx.2_Missense_Mutation_p.R646C|MARK2_uc001nxy.2_Missense_Mutation_p.R636C|MARK2_uc001nxv.3_Missense_Mutation_p.R651C|MARK2_uc001nxz.3_Missense_Mutation_p.R672C|MARK2_uc009yoy.2_Missense_Mutation_p.R626C	NM_001039469	NP_001034558	Q7KZI7	MARK2_HUMAN	MAP/microtubule affinity-regulating kinase 2	715					cell differentiation|establishment or maintenance of epithelial cell apical/basal polarity|intracellular protein kinase cascade|multicellular organismal development|response to oxidative stress	plasma membrane	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			stomach(1)|ovary(1)|lung(1)	3						GCGGGAGATCCGCAAGGTGCT	0.607													11	14					0	0	0.008291	0	0
RPS6KA4	8986	broad.mit.edu	37	11	64137230	64137230	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:64137230C>T	uc001oae.2	+	14	1745	c.1662C>T	c.(1660-1662)TTC>TTT	p.F554F	RPS6KA4_uc001oad.2_Silent_p.F548F|RPS6KA4_uc010rnl.1_Silent_p.F491F|RPS6KA4_uc001oaf.2_Silent_p.F547F|RPS6KA4_uc009ypp.2_Intron	NM_003942	NP_003933	O75676	KS6A4_HUMAN	ribosomal protein S6 kinase, 90kDa, polypeptide	554	Protein kinase 2.				axon guidance|histone phosphorylation|interleukin-1-mediated signaling pathway|intracellular protein kinase cascade|positive regulation of histone acetylation|positive regulation of histone phosphorylation|positive regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	ATP binding|magnesium ion binding|mitogen-activated protein kinase p38 binding|ribosomal protein S6 kinase activity			lung(3)|ovary(1)|breast(1)	5						ACTTCGGGTTCGCGCGGTTGC	0.706													9	13					0	0	0.008291	0	0
SLC22A11	55867	broad.mit.edu	37	11	64326681	64326681	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:64326681C>T	uc001oai.2	+	2	842	c.468C>T	c.(466-468)GGC>GGT	p.G156G	SLC22A11_uc001oah.1_Intron|SLC22A11_uc001oaj.2_Silent_p.G156G|SLC22A11_uc009ypq.2_Silent_p.G156G|SLC22A11_uc001oak.1_5'Flank	NM_018484	NP_060954	Q9NSA0	S22AB_HUMAN	solute carrier family 22 member 11	156	Helical; (Potential).				urate metabolic process	apical plasma membrane|external side of plasma membrane|integral to plasma membrane	inorganic anion exchanger activity|protein binding|sodium-independent organic anion transmembrane transporter activity			ovary(1)|central_nervous_system(1)	2					Probenecid(DB01032)	TCCTGGTGGGCTCCTTTATCT	0.602													27	47					0	0	0.008361	0	0
SLC22A12	116085	broad.mit.edu	37	11	64359241	64359241	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:64359241C>T	uc001oam.1	+	1	960	c.213C>T	c.(211-213)GCC>GCT	p.A71A	SLC22A12_uc009ypr.1_Silent_p.A71A|SLC22A12_uc001oal.1_5'UTR|SLC22A12_uc009yps.1_Silent_p.A71A|SLC22A12_uc001oan.1_Silent_p.A71A|SLC22A12_uc009ypt.2_5'Flank	NM_144585	NP_653186	Q96S37	S22AC_HUMAN	urate anion exchanger 1 isoform a	71					cellular homeostasis|response to drug|urate metabolic process	apical plasma membrane|brush border membrane|integral to membrane	PDZ domain binding|urate transmembrane transporter activity			ovary(1)	1						GTCCTGAGGCCCTCCTGGCTA	0.682													10	34					0	0	0.013537	0	0
NRXN2	9379	broad.mit.edu	37	11	64374929	64374929	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:64374929C>T	uc001oap.2	-	8	2251	c.1740G>A	c.(1738-1740)GTG>GTA	p.V580V	NRXN2_uc001oar.2_Silent_p.V1626V|NRXN2_uc001oas.2_Silent_p.V1556V|NRXN2_uc001oao.2_Silent_p.V266V|NRXN2_uc001oaq.2_Silent_p.V1293V	NM_138734	NP_620063	P58401	NRX2B_HUMAN	neurexin 2 isoform beta precursor	580	Extracellular (Potential).				cell adhesion	integral to membrane				upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)|ovary(2)|kidney(1)|pancreas(1)	10						GGATCACCTCCACTGCGCCCG	0.711													7	29					0	0	0.006214	0	0
RASGRP2	10235	broad.mit.edu	37	11	64507261	64507261	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:64507261G>A	uc009ypu.2	-	7	770	c.543C>T	c.(541-543)TTC>TTT	p.F181F	RASGRP2_uc001oat.2_Silent_p.F83F|RASGRP2_uc001oau.2_Silent_p.F36F|RASGRP2_uc009ypv.2_Silent_p.F181F|RASGRP2_uc009ypw.2_Silent_p.F181F	NM_001098671	NP_001092141	Q7LDG7	GRP2_HUMAN	RAS guanyl releasing protein 2	181	Ras-GEF.				platelet activation|Ras protein signal transduction|regulation of cell growth|regulation of small GTPase mediated signal transduction	cell junction|cytosol|ruffle membrane|synapse|synaptosome	calcium ion binding|diacylglycerol binding|guanyl-nucleotide exchange factor activity				0						CATGAGTCACGAAACTGTGAT	0.577													20	36					0	0	0.010504	0	0
PYGM	5837	broad.mit.edu	37	11	64525948	64525948	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:64525948C>T	uc001oax.3	-	3	1202	c.385G>A	c.(385-387)GAT>AAT	p.D129N	PYGM_uc001oay.3_Intron	NM_005609	NP_005600	P11217	PYGM_HUMAN	muscle glycogen phosphorylase isoform 1	129					glucose metabolic process|glycogen catabolic process	cytosol	glycogen phosphorylase activity|protein binding			ovary(2)	2					Pyridoxal Phosphate(DB00114)	AGCCCCGCATCCTCCTCAATT	0.657													21	65					0	0	0.004656	0	0
CDC42BPG	55561	broad.mit.edu	37	11	64602854	64602854	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:64602854C>T	uc001obs.3	-	16	1918	c.1918G>A	c.(1918-1920)GAG>AAG	p.E640K		NM_017525	NP_059995	Q6DT37	MRCKG_HUMAN	CDC42 binding protein kinase gamma (DMPK-like)	640	Potential.				actin cytoskeleton reorganization|intracellular signal transduction	cell leading edge|centrosome	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			lung(3)|central_nervous_system(1)	4						CGGTTTTCCTCCTGCAGCTGG	0.667													83	236					0	0	0.014410	0	0
EHD1	10938	broad.mit.edu	37	11	64627465	64627465	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:64627465G>A	uc001obu.1	-	3	1101	c.846C>T	c.(844-846)ATC>ATT	p.I282I	EHD1_uc001obv.1_Silent_p.I282I|EHD1_uc010rnq.1_Silent_p.I296I	NM_006795	NP_006786	Q9H4M9	EHD1_HUMAN	EH-domain containing 1	282					blood coagulation|cholesterol homeostasis|endocytic recycling|intracellular protein transport|low-density lipoprotein particle clearance|positive regulation of cholesterol storage|protein homooligomerization	early endosome membrane|lipid particle|plasma membrane|platelet dense tubular network membrane|recycling endosome membrane	ATP binding|calcium ion binding|GTP binding|GTPase activity|protein binding				0						GCAGTGACTGGATGTCCTTGA	0.617													9	44					0	0	0.006214	0	0
C11orf85	283129	broad.mit.edu	37	11	64717230	64717230	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:64717230C>T	uc001ocb.1	-	5	408	c.334G>A	c.(334-336)GAA>AAA	p.E112K	C11orf85_uc001occ.1_RNA|C11orf85_uc001ocd.1_Intron	NM_001037225	NP_001032302	Q3KP22	CK085_HUMAN	hypothetical protein LOC283129	112											0						GACAGGTTTTCATGGAACCAT	0.433													28	51					0	0	0.008361	0	0
SPDYC	387778	broad.mit.edu	37	11	64939997	64939997	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:64939997G>A	uc010rnz.1	+	5	437	c.437G>A	c.(436-438)GGG>GAG	p.G146E		NM_001008778	NP_001008778	Q5MJ68	SPDYC_HUMAN	speedy C	146	Speedy/Ringo box; Required for CDK- binding (By similarity).				cell cycle	nucleus	protein kinase binding				0						TTACGAGTGGGGAAATTCCTG	0.567													17	61					0	0	0.004007	0	0
DPF2	5977	broad.mit.edu	37	11	65108524	65108524	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:65108524C>T	uc001odm.2	+	3	293	c.281C>T	c.(280-282)TCC>TTC	p.S94F	DPF2_uc001odn.2_Missense_Mutation_p.S94F|DPF2_uc010roe.1_Missense_Mutation_p.S94F	NM_006268	NP_006259	Q92785	REQU_HUMAN	D4, zinc and double PHD fingers family 2	94					apoptosis|induction of apoptosis by extracellular signals|regulation of transcription, DNA-dependent|transcription, DNA-dependent	centrosome|nucleus	nucleic acid binding|zinc ion binding			ovary(1)	1						CCACGACTTTCCTTCCCATCT	0.537													21	27					0	0	0.006320	0	0
TIGD3	220359	broad.mit.edu	37	11	65123368	65123368	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:65123368C>T	uc001odo.3	+	2	252	c.89C>T	c.(88-90)TCC>TTC	p.S30F		NM_145719	NP_663771	Q6B0B8	TIGD3_HUMAN	tigger transposable element derived 3	30	HTH psq-type.				regulation of transcription, DNA-dependent	chromosome, centromeric region|nucleus	DNA binding				0						TCCAAGATGTCCCAGTCGGAG	0.617													28	48					0	0	0.007291	0	0
MALAT1	378938	broad.mit.edu	37	11	65266490	65266490	+	RNA	SNP	A	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:65266490A>G	uc010roh.1	+	1		c.1258A>G				NR_002819				Homo sapiens clone alpha1 mRNA sequence.												0						TCCGTCTATAAATACGCCTCG	0.537													28	74					0	0	0.012213	0	0
TSGA10IP	254187	broad.mit.edu	37	11	65714719	65714719	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:65714719C>T	uc001ogk.1	+	5	455	c.423C>T	c.(421-423)TTC>TTT	p.F141F	TSGA10IP_uc009yqw.1_RNA|TSGA10IP_uc009yqx.1_Intron	NM_152762	NP_689975	Q3SY00	T10IP_HUMAN	testis specific, 10 interacting protein	141											0						CCTCCTCGTTCTCCCAGCGTC	0.652													3	7					0	0	0.004672	0	0
TSGA10IP	254187	broad.mit.edu	37	11	65715223	65715223	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:65715223G>A	uc001ogk.1	+	5	959	c.927G>A	c.(925-927)AAG>AAA	p.K309K	TSGA10IP_uc009yqw.1_RNA|TSGA10IP_uc009yqx.1_Intron	NM_152762	NP_689975	Q3SY00	T10IP_HUMAN	testis specific, 10 interacting protein	309											0						AATGGAGGAAGACAAGGGCCA	0.617													3	5					0	0	0.004672	0	0
CATSPER1	117144	broad.mit.edu	37	11	65788969	65788969	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:65788969G>A	uc001ogt.2	-	4	1827	c.1689C>T	c.(1687-1689)CTC>CTT	p.L563L		NM_053054	NP_444282	Q8NEC5	CTSR1_HUMAN	sperm-associated cation channel 1	563	Cytoplasmic (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	cilium|flagellar membrane|integral to membrane	protein binding			ovary(2)	2						CCACTGACCTGAGCCTCCGCA	0.617													12	30					0	0	0.001855	0	0
GAL3ST3	89792	broad.mit.edu	37	11	65810436	65810436	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:65810436G>A	uc001ogv.2	-	2	998	c.838C>T	c.(838-840)CCC>TCC	p.P280S	GAL3ST3_uc001ogw.2_Missense_Mutation_p.P280S	NM_033036	NP_149025	Q96A11	G3ST3_HUMAN	galactose-3-O-sulfotransferase 3	280	Lumenal (Potential).				monosaccharide metabolic process|oligosaccharide metabolic process|poly-N-acetyllactosamine metabolic process|proteoglycan biosynthetic process|sulfur compound metabolic process	Golgi cisterna membrane|integral to membrane	3'-phosphoadenosine 5'-phosphosulfate binding|carbohydrate binding|galactosylceramide sulfotransferase activity|proteoglycan sulfotransferase activity			ovary(1)	1						agcgccgcggggATGGCGGCC	0.617													4	8					0	0	0.009096	0	0
PACS1	55690	broad.mit.edu	37	11	65988658	65988658	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:65988658C>T	uc001oha.1	+	10	1367	c.1233C>T	c.(1231-1233)TCC>TCT	p.S411S		NM_018026	NP_060496	Q6VY07	PACS1_HUMAN	phosphofurin acidic cluster sorting protein 1	411					interspecies interaction between organisms|regulation of defense response to virus by virus|viral reproduction	cytosol	protein binding			ovary(6)	6						AGTCCAGCTCCCAGACGGAGA	0.622													28	64					0	0	0.009535	0	0
NPAS4	266743	broad.mit.edu	37	11	66191885	66191885	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:66191885C>T	uc001ohx.1	+	7	1700	c.1524C>T	c.(1522-1524)TTC>TTT	p.F508F	NPAS4_uc010rpc.1_Silent_p.F298F	NM_178864	NP_849195	Q8IUM7	NPAS4_HUMAN	neuronal PAS domain protein 4	508					transcription, DNA-dependent		DNA binding|signal transducer activity				0						CCTCCACCTTCCCAGACCAGC	0.582													72	134					0	0	0.014410	0	0
DPP3	10072	broad.mit.edu	37	11	66254077	66254077	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:66254077C>T	uc001oig.1	+	4	489	c.427C>T	c.(427-429)CTC>TTC	p.L143F	DPP3_uc001oif.1_Missense_Mutation_p.L143F|DPP3_uc010rpe.1_Missense_Mutation_p.L132F	NM_005700	NP_005691	Q9NY33	DPP3_HUMAN	dipeptidyl peptidase III	143					proteolysis	cytoplasm	aminopeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metallopeptidase activity			ovary(1)|skin(1)	2						AGTCAGGGGCCTCTGGCAGAC	0.617													28	57					0	0	0.005443	0	0
CCDC87	55231	broad.mit.edu	37	11	66358663	66358663	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:66358663G>A	uc001oiq.3	-	1	1892	c.1824C>T	c.(1822-1824)TTC>TTT	p.F608F	CCS_uc001oir.2_5'Flank	NM_018219	NP_060689	Q9NVE4	CCD87_HUMAN	coiled-coil domain containing 87	608										ovary(1)|skin(1)	2						TGACATGAAGGAAATCTGTTT	0.483													26	59					0	0	0.003954	0	0
SPTBN2	6712	broad.mit.edu	37	11	66475083	66475083	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:66475083C>T	uc001ojd.2	-	12	1629	c.1557G>A	c.(1555-1557)ATG>ATA	p.M519I		NM_006946	NP_008877	O15020	SPTN2_HUMAN	spectrin, beta, non-erythrocytic 2	519	Spectrin 2.				actin filament capping|axon guidance|cell death|vesicle-mediated transport	cytosol|spectrin	actin binding|structural constituent of cytoskeleton			large_intestine(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						GGGCGGCCACCATCTGCCGCA	0.647													12	27					0	0	0.013537	0	0
C11orf80	79703	broad.mit.edu	37	11	66571633	66571633	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:66571633A>G	uc001ojf.2	+	9	1017	c.1010A>G	c.(1009-1011)AAC>AGC	p.N337S	C11orf80_uc001ojg.2_Missense_Mutation_p.N103S|C11orf80_uc001ojh.2_Missense_Mutation_p.N104S|C11orf80_uc001oji.2_Missense_Mutation_p.N104S|C11orf80_uc010rpk.1_Missense_Mutation_p.N172S	NM_024650	NP_078926	Q8N6T0	CK080_HUMAN	hypothetical protein LOC79703	182											0						GTTTCTTCCAACCAGCTTAAC	0.438													11	23					0	0	0.010729	0	0
KDM2A	22992	broad.mit.edu	37	11	66948824	66948824	+	Nonsense_Mutation	SNP	T	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:66948824T>A	uc001ojw.2	+	4	1079	c.215T>A	c.(214-216)TTG>TAG	p.L72*	KDM2A_uc001ojx.2_RNA	NM_012308	NP_036440	Q9Y2K7	KDM2A_HUMAN	F-box and leucine-rich repeat protein 11	72					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	DNA binding|histone demethylase activity (H3-K36 specific)|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|zinc ion binding			ovary(4)|lung(3)|breast(1)|skin(1)	9						CGGGGTGGCTTGAGAGATCCT	0.373													3	15					0	0	0.009096	0	0
NDUFV1	4723	broad.mit.edu	37	11	67379641	67379641	+	Silent	SNP	C	A	A	rs145602077		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:67379641C>A	uc001omj.2	+	9	1366	c.1213C>A	c.(1213-1215)CGG>AGG	p.R405R	NDUFV1_uc010rpv.1_Silent_p.R304R|NDUFV1_uc001oml.2_Silent_p.R398R|NDUFV1_uc001omk.3_Silent_p.R396R|NDUFV1_uc010rpw.1_Silent_p.R114R	NM_007103	NP_009034	P49821	NDUV1_HUMAN	NADH dehydrogenase ubiquinone flavoprotein 1	405					mitochondrial electron transport, NADH to ubiquinone|transport	mitochondrial respiratory chain complex I	4 iron, 4 sulfur cluster binding|FMN binding|metal ion binding|NAD binding|NADH dehydrogenase (ubiquinone) activity			skin(1)	1					NADH(DB00157)	GGGGGATGCCCGGCCGGCCGA	0.607													12	93					1.5842e-08	1.70307e-08	0.001855	1	0
UNC93B1	81622	broad.mit.edu	37	11	67765196	67765196	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:67765196G>A	uc001omw.1	-	7	935	c.855C>T	c.(853-855)CTC>CTT	p.L285L		NM_030930	NP_112192	Q9H1C4	UN93B_HUMAN	unc-93 homolog B1	285	Helical; (Potential).				innate immune response|intracellular protein transport|response to virus|toll-like receptor 3 signaling pathway|toll-like receptor 7 signaling pathway|toll-like receptor 9 signaling pathway	early phagosome|endoplasmic reticulum membrane|endosome|integral to membrane|lysosome					0						CCACCACAATGAGGTTTCCGC	0.647													8	29					0	0	0.003080	0	0
NDUFS8	4728	broad.mit.edu	37	11	67800722	67800722	+	Missense_Mutation	SNP	A	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:67800722A>C	uc001onc.2	+	5	451	c.344A>C	c.(343-345)AAG>ACG	p.K115T	NDUFS8_uc010rpz.1_Missense_Mutation_p.K115T|NDUFS8_uc009ysb.1_Intron|NDUFS8_uc009ysc.1_Missense_Mutation_p.K115T	NM_002496	NP_002487	O00217	NDUS8_HUMAN	NADH dehydrogenase ubiquinone Fe-S 8 precursor	115	4Fe-4S ferredoxin-type 1.				mitochondrial electron transport, NADH to ubiquinone|mitochondrial respiratory chain complex I assembly|response to oxidative stress|transport	mitochondrial respiratory chain complex I	4 iron, 4 sulfur cluster binding|electron carrier activity|metal ion binding|NADH dehydrogenase (ubiquinone) activity			skin(1)	1					NADH(DB00157)	ATTGCCTGCAAGCTCTGCGAG	0.627													3	18					0	0	0.004672	0	0
LRP5	4041	broad.mit.edu	37	11	68125224	68125224	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:68125224G>A	uc001ont.2	+	3	670	c.595G>A	c.(595-597)GGA>AGA	p.G199R	LRP5_uc009ysg.2_5'UTR	NM_002335	NP_002326	O75197	LRP5_HUMAN	low density lipoprotein receptor-related protein	199	Beta-propeller 1.|LDL-receptor class B 3.|Extracellular (Potential).				adipose tissue development|bone marrow development|bone morphogenesis|canonical Wnt receptor signaling pathway|cholesterol homeostasis|endocytosis|glucose catabolic process|negative regulation of osteoblast differentiation|negative regulation of protein serine/threonine kinase activity|positive regulation of fat cell differentiation|positive regulation of mesenchymal cell proliferation|positive regulation of mitosis|positive regulation of transcription from RNA polymerase II promoter|regulation of blood pressure|regulation of canonical Wnt receptor signaling pathway|retina morphogenesis in camera-type eye|retinal blood vessel morphogenesis|Wnt receptor signaling pathway involved in dorsal/ventral axis specification	endoplasmic reticulum|integral to membrane|plasma membrane|receptor complex	protein binding|receptor activity			lung(2)|skin(2)|ovary(1)|pancreas(1)|breast(1)	7						CTGGCCCAATGGACTGACCAT	0.602													17	21					0	0	0.004007	0	0
LRP5	4041	broad.mit.edu	37	11	68207320	68207320	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:68207320G>A	uc001ont.2	+	21	4499	c.4424G>A	c.(4423-4425)CGG>CAG	p.R1475Q	LRP5_uc009ysg.2_Missense_Mutation_p.R885Q	NM_002335	NP_002326	O75197	LRP5_HUMAN	low density lipoprotein receptor-related protein	1475	Cytoplasmic (Potential).				adipose tissue development|bone marrow development|bone morphogenesis|canonical Wnt receptor signaling pathway|cholesterol homeostasis|endocytosis|glucose catabolic process|negative regulation of osteoblast differentiation|negative regulation of protein serine/threonine kinase activity|positive regulation of fat cell differentiation|positive regulation of mesenchymal cell proliferation|positive regulation of mitosis|positive regulation of transcription from RNA polymerase II promoter|regulation of blood pressure|regulation of canonical Wnt receptor signaling pathway|retina morphogenesis in camera-type eye|retinal blood vessel morphogenesis|Wnt receptor signaling pathway involved in dorsal/ventral axis specification	endoplasmic reticulum|integral to membrane|plasma membrane|receptor complex	protein binding|receptor activity			lung(2)|skin(2)|ovary(1)|pancreas(1)|breast(1)	7						CTCTACGACCGGAACCACGTC	0.577													8	22					0	0	0.008291	0	0
MRGPRD	116512	broad.mit.edu	37	11	68747504	68747504	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:68747504C>T	uc010rqf.1	-	1	952	c.952G>A	c.(952-954)GAG>AAG	p.E318K		NM_198923	NP_944605	Q8TDS7	MRGRD_HUMAN	MAS-related GPR, member D	318	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(1)	1			STAD - Stomach adenocarcinoma(18;0.0208)|LUAD - Lung adenocarcinoma(13;0.0713)			GCCCCCATCTCATTGGTGCCC	0.687													25	41					0	0	0.003954	0	0
MRGPRD	116512	broad.mit.edu	37	11	68747545	68747545	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:68747545G>A	uc010rqf.1	-	1	911	c.911C>T	c.(910-912)CCC>CTC	p.P304L		NM_198923	NP_944605	Q8TDS7	MRGRD_HUMAN	MAS-related GPR, member D	304	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(1)	1			STAD - Stomach adenocarcinoma(18;0.0208)|LUAD - Lung adenocarcinoma(13;0.0713)			TTCCAGCTCGGGCTCCTCGCG	0.682													26	49					0	0	0.004656	0	0
MRGPRD	116512	broad.mit.edu	37	11	68748292	68748292	+	Missense_Mutation	SNP	C	T	T	rs138059734	byFrequency	TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:68748292C>T	uc010rqf.1	-	1	164	c.164G>A	c.(163-165)CGA>CAA	p.R55Q		NM_198923	NP_944605	Q8TDS7	MRGRD_HUMAN	MAS-related GPR, member D	55	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(1)	1			STAD - Stomach adenocarcinoma(18;0.0208)|LUAD - Lung adenocarcinoma(13;0.0713)			CCTGTGCATTCGAAAGCCCAG	0.597													23	33					0	0	0.014323	0	0
PPFIA1	8500	broad.mit.edu	37	11	70183477	70183477	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:70183477C>T	uc001opo.2	+	12	1633	c.1435C>T	c.(1435-1437)CTT>TTT	p.L479F	PPFIA1_uc001opn.1_Missense_Mutation_p.L479F|PPFIA1_uc001opp.2_RNA|PPFIA1_uc001opq.1_RNA	NM_003626	NP_003617	Q13136	LIPA1_HUMAN	PTPRF interacting protein alpha 1 isoform b	479	Potential.				cell-matrix adhesion	cytoplasm	protein binding|signal transducer activity			lung(2)|ovary(1)	3			BRCA - Breast invasive adenocarcinoma(2;1.04e-44)|LUSC - Lung squamous cell carcinoma(11;1.46e-14)|STAD - Stomach adenocarcinoma(18;0.0513)			TCAGAACTCTCTTTTAAGAGA	0.333													3	6					0	0	0.009096	0	0
KRTAP5-10	387273	broad.mit.edu	37	11	71276849	71276849	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:71276849G>A	uc001oqt.1	+	1	241	c.216G>A	c.(214-216)GGG>GGA	p.G72G		NM_001012710	NP_001012728	Q6L8G5	KR510_HUMAN	keratin associated protein 5-10	72	7 X 4 AA repeats of C-C-X-P.					keratin filament				skin(1)	1						GCTCCAAGGGGGACTGTGGCT	0.677													65	93					0	0	0.014410	0	0
FOLR1	2348	broad.mit.edu	37	11	71907035	71907035	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:71907035C>T	uc001orz.1	+	6	726	c.588C>T	c.(586-588)TCC>TCT	p.S196S	FOLR1_uc001osa.1_Silent_p.S196S|FOLR1_uc001osb.1_Silent_p.S196S|FOLR1_uc001osc.1_Silent_p.S196S|FOLR1_uc001osd.1_Silent_p.S196S	NM_016724	NP_057936	P15328	FOLR1_HUMAN	folate receptor 1 precursor	196					cell death|folic acid transport|receptor-mediated endocytosis	anchored to membrane|extracellular region|integral to plasma membrane|membrane fraction	folic acid binding|receptor activity			ovary(1)	1						GGACTCACTCCTACAAGGTCA	0.557													25	58					0	0	0.003954	0	0
ARAP1	116985	broad.mit.edu	37	11	72423317	72423318	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:72423317_72423318CC>TT	uc001osu.2	-	7	1134_1135	c.945_946GG>AA	c.(943-948)ATGGAC>ATAAAC	p.315_316MD>IN	ARAP1_uc001osv.2_Missense_Mutation_p.315_316MD>IN|ARAP1_uc001osr.2_Missense_Mutation_p.75_76MD>IN|ARAP1_uc001oss.2_Missense_Mutation_p.70_71MD>IN|ARAP1_uc009yth.2_Missense_Mutation_p.70_71MD>IN|ARAP1_uc010rre.1_Missense_Mutation_p.70_71MD>IN	NM_001040118	NP_001035207	Q96P48	ARAP1_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	315_316					actin filament reorganization involved in cell cycle|negative regulation of stress fiber assembly|positive regulation of Cdc42 GTPase activity|positive regulation of filopodium assembly|regulation of ARF GTPase activity|regulation of cell shape|regulation of cellular component movement|small GTPase mediated signal transduction	cytosol|Golgi cisterna membrane|plasma membrane	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|protein binding|Rho GTPase activator activity|zinc ion binding			skin(1)	1						GGCGGCCCGTCCATGGGGTGTG	0.663													114	254					0	0	0.004672	0	0
ARAP1	116985	broad.mit.edu	37	11	72437979	72437979	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:72437979G>A	uc001osu.2	-	3	384	c.195C>T	c.(193-195)CTC>CTT	p.L65L	ARAP1_uc001osv.2_Silent_p.L65L	NM_001040118	NP_001035207	Q96P48	ARAP1_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	65	SAM.				actin filament reorganization involved in cell cycle|negative regulation of stress fiber assembly|positive regulation of Cdc42 GTPase activity|positive regulation of filopodium assembly|regulation of ARF GTPase activity|regulation of cell shape|regulation of cellular component movement|small GTPase mediated signal transduction	cytosol|Golgi cisterna membrane|plasma membrane	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|protein binding|Rho GTPase activator activity|zinc ion binding			skin(1)	1						TATGGGCACGGAGCAGGCCAG	0.687													81	148					0	0	0.014410	0	0
P2RY2	5029	broad.mit.edu	37	11	72945458	72945458	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:72945458C>T	uc001otj.2	+	3	587	c.254C>T	c.(253-255)TCC>TTC	p.S85F	P2RY2_uc001otk.2_Missense_Mutation_p.S85F|P2RY2_uc001otl.2_Missense_Mutation_p.S85F	NM_002564	NP_002555	P41231	P2RY2_HUMAN	purinergic receptor P2Y2	85	Helical; Name=2; (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger	integral to plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(2)|lung(1)|skin(1)	4					Suramin(DB04786)	TATGCGGCCTCCCTGCCGCTG	0.587													5	47					0	0	0.000602	0	0
ARHGEF17	9828	broad.mit.edu	37	11	73021882	73021882	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:73021882C>T	uc001otu.2	+	1	2220	c.2199C>T	c.(2197-2199)TCC>TCT	p.S733S		NM_014786	NP_055601	Q96PE2	ARHGH_HUMAN	Rho guanine nucleotide exchange factor (GEF) 17	733					actin cytoskeleton organization|apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity				0						CCTACAGGTCCCTGAGTGACC	0.627													7	45					0	0	0.001984	0	0
ARHGEF17	9828	broad.mit.edu	37	11	73022164	73022164	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:73022164C>T	uc001otu.2	+	1	2502	c.2481C>T	c.(2479-2481)TCC>TCT	p.S827S		NM_014786	NP_055601	Q96PE2	ARHGH_HUMAN	Rho guanine nucleotide exchange factor (GEF) 17	827					actin cytoskeleton organization|apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity				0						AGAAGAAATCCCTGAGTGACC	0.622													32	47					0	0	0.012213	0	0
C2CD3	26005	broad.mit.edu	37	11	73748573	73748573	+	Missense_Mutation	SNP	A	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:73748573A>C	uc001ouu.2	-	30	6058	c.5831T>G	c.(5830-5832)ATC>AGC	p.I1944S	C2CD3_uc001out.2_RNA	NM_015531	NP_056346	Q4AC94	C2CD3_HUMAN	C2 calcium-dependent domain containing 3	1944						centrosome				ovary(4)|pancreas(2)|skin(1)	7	Breast(11;4.16e-06)					TTTCTCCAGGATACACTGGCT	0.522													58	101					0	0	0.014410	0	0
P4HA3	283208	broad.mit.edu	37	11	74013577	74013577	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:74013577C>T	uc001ouz.2	-	3	447	c.404G>A	c.(403-405)GGA>GAA	p.G135E	P4HA3_uc001ouy.3_RNA|P4HA3_uc010rrj.1_Missense_Mutation_p.G135E	NM_182904	NP_878907	Q7Z4N8	P4HA3_HUMAN	prolyl 4-hydroxylase, alpha III subunit	135						endoplasmic reticulum lumen	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 4-dioxygenase activity			skin(1)	1	Breast(11;2.31e-05)					CCTTGCTGCTCCCTCAAGGTC	0.517													25	72					0	0	0.007291	0	0
POLD3	10714	broad.mit.edu	37	11	74324008	74324008	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:74324008C>T	uc001ovf.1	+	5	420	c.345C>T	c.(343-345)TTC>TTT	p.F115F	POLD3_uc009yua.1_Silent_p.F9F	NM_006591	NP_006582	Q15054	DPOD3_HUMAN	DNA-directed DNA polymerase delta 3	115					base-excision repair|DNA strand elongation involved in DNA replication|DNA synthesis involved in DNA repair|mismatch repair|nucleotide-excision repair, DNA gap filling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	delta DNA polymerase complex|nucleoplasm	DNA-directed DNA polymerase activity|protein binding			kidney(2)|ovary(1)	3	Breast(11;3.21e-06)					GGCCTCTGTTCAATACTGACT	0.443													23	50					0	0	0.002780	0	0
XRRA1	143570	broad.mit.edu	37	11	74563124	74563124	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:74563124C>T	uc009yub.2	-	13	1482	c.1150G>A	c.(1150-1152)GCA>ACA	p.A384T	XRRA1_uc001ovm.2_RNA|XRRA1_uc001ovn.2_Missense_Mutation_p.A7T|XRRA1_uc001ovo.2_Missense_Mutation_p.A7T|XRRA1_uc001ovq.3_Intron|XRRA1_uc001ovp.3_Missense_Mutation_p.A109T|XRRA1_uc001ovr.2_Missense_Mutation_p.A7T|XRRA1_uc001ovs.1_Intron	NM_182969	NP_892014	Q6P2D8	XRRA1_HUMAN	X-ray radiation resistance associated 1	384					response to X-ray	cytoplasm|nucleus				central_nervous_system(1)	1						TCCTCTTTTGCGATCTGTAAT	0.527													10	62					0	0	0.006214	0	0
SLCO2B1	11309	broad.mit.edu	37	11	74904306	74904306	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:74904306C>T	uc001owb.2	+	9	1506	c.1119C>T	c.(1117-1119)TTC>TTT	p.F373F	SLCO2B1_uc010rrq.1_Silent_p.F118F|SLCO2B1_uc010rrr.1_Silent_p.F229F|SLCO2B1_uc010rrs.1_Silent_p.F257F|SLCO2B1_uc001owc.2_Silent_p.F146F|SLCO2B1_uc001owd.2_Silent_p.F351F	NM_007256	NP_009187	O94956	SO2B1_HUMAN	solute carrier organic anion transporter family,	373	Helical; Name=7; (Potential).				sodium-independent organic anion transport	integral to membrane	sodium-independent organic anion transmembrane transporter activity			ovary(1)|breast(1)	2					Ergoloid mesylate(DB01049)	ACCCCATCTTCCTGCTGGTGG	0.627													32	44					0	0	0.009535	0	0
SLCO2B1	11309	broad.mit.edu	37	11	74911432	74911432	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:74911432G>A	uc001owb.2	+	11	2150	c.1763G>A	c.(1762-1764)AGA>AAA	p.R588K	SLCO2B1_uc010rrq.1_Missense_Mutation_p.R333K|SLCO2B1_uc010rrr.1_Missense_Mutation_p.R444K|SLCO2B1_uc010rrs.1_Missense_Mutation_p.R472K|SLCO2B1_uc001owc.2_Missense_Mutation_p.R361K|SLCO2B1_uc001owd.2_Missense_Mutation_p.R566K	NM_007256	NP_009187	O94956	SO2B1_HUMAN	solute carrier organic anion transporter family,	588	Cytoplasmic (Potential).				sodium-independent organic anion transport	integral to membrane	sodium-independent organic anion transmembrane transporter activity			ovary(1)|breast(1)	2					Ergoloid mesylate(DB01049)	CTCATCCTAAGGTGAAGGTGG	0.602													28	56					0	0	0.007291	0	0
LRRC32	2615	broad.mit.edu	37	11	76370954	76370955	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:76370954_76370955GG>AA	uc001oxq.3	-	3	1925_1926	c.1682_1683CC>TT	c.(1681-1683)ACC>ATT	p.T561I	LRRC32_uc001oxr.3_Missense_Mutation_p.T561I|LRRC32_uc010rsf.1_Missense_Mutation_p.T547I	NM_005512	NP_005503	Q14392	LRC32_HUMAN	leucine rich repeat containing 32 precursor	561	Extracellular (Potential).					integral to plasma membrane					0						GCCGGAGGCTGGTCTCCAGGCC	0.663													19	20					0	0	0.004672	0	0
LRRC32	2615	broad.mit.edu	37	11	76371827	76371827	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:76371827C>T	uc001oxq.3	-	3	1053	c.810G>A	c.(808-810)CTG>CTA	p.L270L	LRRC32_uc001oxr.3_Silent_p.L270L|LRRC32_uc010rsf.1_Silent_p.L270L	NM_005512	NP_005503	Q14392	LRC32_HUMAN	leucine rich repeat containing 32 precursor	270	LRR 10.|Extracellular (Potential).					integral to plasma membrane					0						TGGACAAGTTCAGGTAGATGA	0.642													8	59					0	0	0.006214	0	0
OMP	4975	broad.mit.edu	37	11	76813933	76813933	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:76813933C>T	uc010rsk.1	+	1	48	c.48C>T	c.(46-48)GTC>GTT	p.V16V	CAPN5_uc001oxx.2_Intron|CAPN5_uc009yup.2_Intron|CAPN5_uc009yuq.2_Intron|CAPN5_uc001oxy.2_Intron	NM_006189	NP_006180	P47874	OMP_HUMAN	olfactory marker protein	16					sensory perception of smell|synaptic transmission						0						TGCCGCTGGTCCTGGACCAGG	0.692													11	9					0	0	0.010729	0	0
MYO7A	4647	broad.mit.edu	37	11	76909548	76909548	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:76909548C>T	uc001oyb.2	+	34	4722	c.4450C>T	c.(4450-4452)CTC>TTC	p.L1484F	MYO7A_uc010rsm.1_Missense_Mutation_p.L1473F|MYO7A_uc001oyc.2_Missense_Mutation_p.L1484F|MYO7A_uc009yus.1_RNA|MYO7A_uc009yut.1_Missense_Mutation_p.L695F	NM_000260	NP_000251	Q13402	MYO7A_HUMAN	myosin VIIA isoform 1	1484	FERM 1.				actin filament-based movement|equilibrioception|lysosome organization|sensory perception of sound|visual perception	cytosol|lysosomal membrane|myosin complex|photoreceptor inner segment|photoreceptor outer segment|synapse	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(3)|breast(1)	4						AGGCCCCAGTCTCCCCAAGAA	0.507													5	41					0	0	0.000602	0	0
INTS4	92105	broad.mit.edu	37	11	77594888	77594889	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:77594888_77594889GG>AA	uc001oys.2	-	22	2730_2731	c.2702_2703CC>TT	c.(2701-2703)ACC>ATT	p.T901I	C11orf67_uc001oyp.2_Intron|C11orf67_uc001oyr.1_Intron|INTS4_uc001oyt.2_RNA	NM_033547	NP_291025	Q96HW7	INT4_HUMAN	integrator complex subunit 4	901				HT -> PP (in Ref. 1; AAQ13616).	snRNA processing	integrator complex	protein binding			ovary(2)	2	all_cancers(14;4.53e-19)|all_epithelial(13;1.73e-21)|Breast(9;2.71e-16)|Ovarian(111;0.152)		Epithelial(5;1.13e-46)|all cancers(3;8.92e-44)|BRCA - Breast invasive adenocarcinoma(5;8.4e-26)|OV - Ovarian serous cystadenocarcinoma(8;1.05e-23)			CTGTCCAAGCGGTGTGGGAGAG	0.53													8	8					0	0	0.004672	0	0
ODZ4	26011	broad.mit.edu	37	11	78380134	78380134	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:78380134C>T	uc001ozl.3	-	32	7719	c.7256G>A	c.(7255-7257)CGA>CAA	p.R2419Q	ODZ4_uc001ozk.3_Missense_Mutation_p.R644Q|ODZ4_uc009yvb.1_Missense_Mutation_p.R1003Q	NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	2419	Extracellular (Potential).				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						ATCATAATCTCGCCGGCCCAT	0.517													4	15					0	0	0.009096	0	0
ODZ4	26011	broad.mit.edu	37	11	78383364	78383364	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:78383364C>T	uc001ozl.3	-	31	5970	c.5507G>A	c.(5506-5508)CGA>CAA	p.R1836Q	ODZ4_uc001ozk.3_Missense_Mutation_p.R61Q|ODZ4_uc009yvb.1_Missense_Mutation_p.R420Q	NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	1836	Extracellular (Potential).				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						TAGGAGATTTCGGTTGTGAAC	0.502													5	66					0	0	0.001984	0	0
ODZ4	26011	broad.mit.edu	37	11	78467953	78467953	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:78467953G>A	uc001ozl.3	-	19	3116	c.2653C>T	c.(2653-2655)CCT>TCT	p.P885S		NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	885	Extracellular (Potential).				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						TGTGACACAGGGACCTGTGTC	0.587													13	23					0	0	0.002450	0	0
PCF11	51585	broad.mit.edu	37	11	82877056	82877057	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:82877056_82877057CC>TT	uc001ozx.3	+	5	1462_1463	c.1117_1118CC>TT	c.(1117-1119)CCT>TTT	p.P373F	PCF11_uc010rsu.1_Missense_Mutation_p.P373F	NM_015885	NP_056969	O94913	PCF11_HUMAN	pre-mRNA cleavage complex II protein Pcf11	373	Lys-rich.				mRNA 3'-end processing|mRNA cleavage|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	mRNA cleavage factor complex				ovary(1)	1						ATCACCCTCACCTTTGAAAAAC	0.312													4	15					0	0	0.004672	0	0
DLG2	1740	broad.mit.edu	37	11	83170872	83170872	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:83170872C>T	uc001paj.2	-	23	2905	c.2602G>A	c.(2602-2604)GAA>AAA	p.E868K	DLG2_uc001pai.2_Missense_Mutation_p.E747K|DLG2_uc010rsy.1_Missense_Mutation_p.E817K|DLG2_uc010rsz.1_Missense_Mutation_p.E864K|DLG2_uc010rta.1_Missense_Mutation_p.E850K|DLG2_uc001pak.2_Missense_Mutation_p.E973K|DLG2_uc010rsw.1_Missense_Mutation_p.E332K|DLG2_uc010rsx.1_Missense_Mutation_p.E345K	NM_001364	NP_001355	Q15700	DLG2_HUMAN	chapsyn-110 isoform 2	868						cell junction|postsynaptic density|postsynaptic membrane	guanylate kinase activity|protein binding|protein binding			ovary(3)|pancreas(2)|skin(1)	6		all_cancers(6;0.00791)|Acute lymphoblastic leukemia(157;4.44e-05)|all_hematologic(158;0.0036)				TATAACTTTTCCTTTGAGGGA	0.353													12	29					0	0	0.004007	0	0
DLG2	1740	broad.mit.edu	37	11	83673961	83673961	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:83673961G>A	uc001paj.2	-	9	1295	c.992C>T	c.(991-993)CCA>CTA	p.P331L	DLG2_uc001pai.2_Missense_Mutation_p.P280L|DLG2_uc010rsy.1_Missense_Mutation_p.P298L|DLG2_uc010rsz.1_Missense_Mutation_p.P331L|DLG2_uc010rta.1_Missense_Mutation_p.P331L|DLG2_uc001pak.2_Missense_Mutation_p.P436L|DLG2_uc010rtb.1_Missense_Mutation_p.P298L|DLG2_uc001pal.1_Missense_Mutation_p.P331L|DLG2_uc001pam.1_Missense_Mutation_p.P370L	NM_001364	NP_001355	Q15700	DLG2_HUMAN	chapsyn-110 isoform 2	331						cell junction|postsynaptic density|postsynaptic membrane	guanylate kinase activity|protein binding|protein binding			ovary(3)|pancreas(2)|skin(1)	6		all_cancers(6;0.00791)|Acute lymphoblastic leukemia(157;4.44e-05)|all_hematologic(158;0.0036)				CATGTGCTTTGGAATTGGTGA	0.428													36	49					0	0	0.005524	0	0
EED	8726	broad.mit.edu	37	11	85963196	85963196	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:85963196C>T	uc001pbp.2	+	3	731	c.274C>T	c.(274-276)CAT>TAT	p.H92Y	EED_uc010rtm.1_Missense_Mutation_p.H92Y|EED_uc001pbq.2_Missense_Mutation_p.H92Y|EED_uc001pbr.2_Missense_Mutation_p.H92Y|EED_uc001pbs.2_Missense_Mutation_p.H92Y	NM_003797	NP_003788	O75530	EED_HUMAN	embryonic ectoderm development isoform a	92	Interaction with EZH2 (By similarity).|WD 1.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	ESC/E(Z) complex	histone methyltransferase activity|identical protein binding			skin(1)|pancreas(1)	2		Acute lymphoblastic leukemia(157;7.24e-07)|all_hematologic(158;0.00092)				ATAGGAAGATCATAACCAACC	0.343													6	24					0	0	0.001984	0	0
GRM5	2915	broad.mit.edu	37	11	88780397	88780397	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:88780397G>A	uc001pcq.2	-	1	844	c.644C>T	c.(643-645)TCA>TTA	p.S215L	GRM5_uc009yvm.2_Missense_Mutation_p.S215L|GRM5_uc009yvn.1_Missense_Mutation_p.S215L	NM_001143831	NP_001137303	P41594	GRM5_HUMAN	glutamate receptor, metabotropic 5 isoform a	215	Extracellular (Potential).				activation of phospholipase C activity by metabotropic glutamate receptor signaling pathway|synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			central_nervous_system(4)|ovary(2)|lung(2)|breast(1)	9		Acute lymphoblastic leukemia(157;2.54e-05)|all_hematologic(158;0.00834)			Acamprosate(DB00659)	GTGCACGGCTGATACATAGGT	0.418													26	44					0	0	0.009535	0	0
TYR	7299	broad.mit.edu	37	11	88961003	88961003	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:88961003C>T	uc001pcs.2	+	3	1131	c.1049C>T	c.(1048-1050)CCA>CTA	p.P350L		NM_000372	NP_000363	P14679	TYRO_HUMAN	tyrosinase precursor	350	Lumenal, melanosome (Potential).				eye pigment biosynthetic process|melanin biosynthetic process from tyrosine|visual perception	Golgi-associated vesicle|integral to membrane|lysosome|melanosome membrane|perinuclear region of cytoplasm	copper ion binding|monophenol monooxygenase activity|protein heterodimerization activity|protein homodimerization activity			ovary(2)|central_nervous_system(1)	3		Acute lymphoblastic leukemia(157;2.33e-05)|all_hematologic(158;0.0033)			Azelaic Acid(DB00548)|Mimosine(DB01055)|NADH(DB00157)	TTTGCTAGTCCACTTACTGGG	0.363									Oculocutaneous_Albinism				11	24					0	0	0.001855	0	0
NAALAD2	10003	broad.mit.edu	37	11	89903266	89903266	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:89903266C>T	uc001pdf.3	+	13	1481	c.1372C>T	c.(1372-1374)CCC>TCC	p.P458S	NAALAD2_uc009yvx.2_Missense_Mutation_p.P425S|NAALAD2_uc009yvy.2_Intron	NM_005467	NP_005458	Q9Y3Q0	NALD2_HUMAN	N-acetylated alpha-linked acidic dipeptidase 2	458	Extracellular (Potential).|NAALADase.				proteolysis	integral to membrane	carboxypeptidase activity|dipeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metallopeptidase activity|serine-type peptidase activity			pancreas(1)|skin(1)	2		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00556)				TGACTGTACTCCCCTTCTTTA	0.294													11	94					0	0	0.002450	0	0
FAT3	120114	broad.mit.edu	37	11	92085960	92085960	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:92085960G>A	uc001pdj.3	+	1	699	c.682G>A	c.(682-684)GAT>AAT	p.D228N		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	228	Cadherin 2.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				GAATAGGTATGATCTGGAAAT	0.388										TCGA Ovarian(4;0.039)			109	335					0	0	0.014410	0	0
FAT3	120114	broad.mit.edu	37	11	92534656	92534656	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:92534656G>A	uc001pdj.3	+	9	8494	c.8477G>A	c.(8476-8478)GGG>GAG	p.G2826E		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	2826	Cadherin 26.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				ATAATGGAAGGGATGCCTGTT	0.448										TCGA Ovarian(4;0.039)			75	264					0	0	0.014410	0	0
FAT3	120114	broad.mit.edu	37	11	92616291	92616291	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:92616291G>A	uc001pdj.3	+	23	12686	c.12669G>A	c.(12667-12669)CAG>CAA	p.Q4223Q	FAT3_uc001pdi.3_Silent_p.Q663Q	NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	4223	Cytoplasmic (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				ACGTCTACCAGGAGGTGGGGC	0.672										TCGA Ovarian(4;0.039)			59	170					0	0	0.014410	0	0
FAT3	120114	broad.mit.edu	37	11	92616345	92616345	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:92616345C>T	uc001pdj.3	+	23	12740	c.12723C>T	c.(12721-12723)TTC>TTT	p.F4241F	FAT3_uc001pdi.3_Silent_p.F681F	NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	4241	Cytoplasmic (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				CACCCTGCTTCCAGAGTGACT	0.662										TCGA Ovarian(4;0.039)			6	197					0	0	0.001168	0	0
CCDC67	159989	broad.mit.edu	37	11	93127763	93127763	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:93127763C>T	uc001pdq.2	+	10	1280	c.1180C>T	c.(1180-1182)CTG>TTG	p.L394L	CCDC67_uc001pdo.1_Silent_p.L394L|CCDC67_uc001pdp.2_Silent_p.L394L	NM_181645	NP_857596	Q05D60	CCD67_HUMAN	coiled-coil domain containing 67	394	Potential.									ovary(1)	1		Acute lymphoblastic leukemia(157;2.35e-05)|all_hematologic(158;0.00824)				AGCTGCCCTTCTGGAAAAACA	0.383													3	24					0	0	0.009096	0	0
MED17	9440	broad.mit.edu	37	11	93523911	93523911	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:93523911C>T	uc001pem.3	+	3	864	c.589C>T	c.(589-591)CGA>TGA	p.R197*		NM_004268	NP_004259	Q9NVC6	MED17_HUMAN	mediator complex subunit 17	197					androgen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex|transcription factor complex	ligand-dependent nuclear receptor transcription coactivator activity|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			ovary(1)	1		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)				CTGGAAACTTCGAAAAGTTGG	0.328													10	41					0	0	0.010729	0	0
HEPHL1	341208	broad.mit.edu	37	11	93800693	93800694	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:93800693_93800694GG>AA	uc001pep.2	+	5	997_998	c.840_841GG>AA	c.(838-843)CCGGAG>CCAAAG	p.E281K	uc001pen.1_RNA	NM_001098672	NP_001092142	Q6MZM0	HPHL1_HUMAN	hephaestin-like 1 precursor	281	Plastocyanin-like 2.|Extracellular (Potential).				copper ion transport	integral to membrane	copper ion binding|oxidoreductase activity			ovary(3)	3		Acute lymphoblastic leukemia(157;2.34e-05)|all_hematologic(158;0.00824)				GAAACTTCCCGGAGCCTGATAT	0.465													17	97					0	0	0.004672	0	0
PANX1	24145	broad.mit.edu	37	11	93911600	93911600	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:93911600C>T	uc001per.2	+	3	772	c.387C>T	c.(385-387)TTC>TTT	p.F129F	PANX1_uc001peq.2_Silent_p.F129F	NM_015368	NP_056183	Q96RD7	PANX1_HUMAN	pannexin 1	129	Cytoplasmic (Potential).				positive regulation of interleukin-1 beta secretion|protein hexamerization|synaptic transmission	bleb|endoplasmic reticulum membrane|gap junction|integral to membrane	calcium channel activity|gap junction hemi-channel activity|leak channel activity|receptor binding				0		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)				TCTGGCGTTTCGCAGCTGCTC	0.468													29	28					0	0	0.012213	0	0
PIWIL4	143689	broad.mit.edu	37	11	94340698	94340698	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:94340698C>T	uc001pfa.2	+	14	1943	c.1732C>T	c.(1732-1734)CTT>TTT	p.L578F	PIWIL4_uc010rue.1_RNA|PIWIL4_uc009ywk.1_RNA	NM_152431	NP_689644	Q7Z3Z4	PIWL4_HUMAN	piwi-like 4	578	Piwi.				cell differentiation|DNA methylation involved in gamete generation|gene silencing by RNA|meiosis|multicellular organismal development|piRNA metabolic process|regulation of translation|spermatogenesis	nucleus|piP-body	piRNA binding			skin(1)	1		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.0123)				CCAATGTGTGCTTGCTCGGAC	0.463													16	27					0	0	0.004990	0	0
KDM4D	55693	broad.mit.edu	37	11	94731240	94731240	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:94731240C>T	uc001pfe.2	+	3	1536	c.704C>T	c.(703-705)TCC>TTC	p.S235F		NM_018039	NP_060509	Q6B0I6	KDM4D_HUMAN	jumonji domain containing 2D	235	JmjC.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen				0						CCAGGCAGTTCCCGGGGTTGT	0.592													10	42					0	0	0.010729	0	0
CNTN5	53942	broad.mit.edu	37	11	99690398	99690398	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:99690398G>A	uc001pga.2	+	4	518	c.179G>A	c.(178-180)GGA>GAA	p.G60E	CNTN5_uc009ywv.1_Missense_Mutation_p.G60E|CNTN5_uc001pfz.2_Missense_Mutation_p.G60E|CNTN5_uc001pgb.2_Intron	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long	60					cell adhesion	anchored to membrane|plasma membrane	protein binding			skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		CCTTCATTAGGAACACTGAGT	0.433													18	31					0	0	0.004990	0	0
CNTN5	53942	broad.mit.edu	37	11	100126527	100126527	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:100126527G>A	uc001pga.2	+	17	2380	c.2041G>A	c.(2041-2043)GAA>AAA	p.E681K	CNTN5_uc001pfz.2_Missense_Mutation_p.E681K|CNTN5_uc001pgb.2_Missense_Mutation_p.E607K|CNTN5_uc010ruk.1_5'UTR	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long	681	Fibronectin type-III 1.				cell adhesion	anchored to membrane|plasma membrane	protein binding			skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		AATTGTTGAGGAAATAACCGA	0.478													20	45					0	0	0.008871	0	0
CNTN5	53942	broad.mit.edu	37	11	100221454	100221454	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:100221454C>T	uc001pga.2	+	24	3391	c.3052C>T	c.(3052-3054)CAC>TAC	p.H1018Y	CNTN5_uc001pgb.2_Missense_Mutation_p.H944Y|CNTN5_uc010ruk.1_Missense_Mutation_p.H289Y	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long	1018	Fibronectin type-III 4.				cell adhesion	anchored to membrane|plasma membrane	protein binding			skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		GCAAGAGGGTCACAGCAACAG	0.308													6	29					0	0	0.001168	0	0
MMP7	4316	broad.mit.edu	37	11	102395787	102395787	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:102395787C>T	uc001phb.2	-	4	540	c.493G>A	c.(493-495)GAC>AAC	p.D165N	MMP7_uc009yxd.2_Missense_Mutation_p.D165N	NM_002423	NP_002414	P09237	MMP7_HUMAN	matrix metalloproteinase 7 preproprotein	165		Zinc 1.			collagen catabolic process|proteolysis	extracellular space|proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(1)	1	all_cancers(8;2.04e-05)|all_epithelial(12;0.00053)|Lung NSC(15;0.139)	Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0033)	Epithelial(9;0.0105)|all cancers(10;0.0496)|Lung(13;0.109)|LUSC - Lung squamous cell carcinoma(19;0.151)	BRCA - Breast invasive adenocarcinoma(274;0.0147)		GGGTAGGAGTCCCCATGAGCT	0.448													6	25					0	0	0.001984	0	0
MMP20	9313	broad.mit.edu	37	11	102465400	102465401	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:102465400_102465401CC>TT	uc001phc.2	-	7	1054_1055	c.1041_1042GG>AA	c.(1039-1044)GTGGAT>GTAAAT	p.D348N		NM_004771	NP_004762	O60882	MMP20_HUMAN	matrix metalloproteinase 20 preproprotein	348	Hemopexin-like 2.				proteolysis|regulation of enamel mineralization	extracellular space|proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|protein binding|zinc ion binding			urinary_tract(1)|skin(1)	2	all_cancers(8;8.95e-05)|all_epithelial(12;0.00227)|Lung NSC(15;0.139)	Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0033)	Epithelial(9;0.0216)|Lung(13;0.0711)|all cancers(10;0.0889)|LUSC - Lung squamous cell carcinoma(19;0.13)	BRCA - Breast invasive adenocarcinoma(274;0.0161)		TAAGCTGCATCCACATTGGACA	0.525													4	32					0	0	0.004672	0	0
MMP27	64066	broad.mit.edu	37	11	102575416	102575416	+	Missense_Mutation	SNP	C	T	T	rs139015378		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:102575416C>T	uc001phd.1	-	2	216	c.193G>A	c.(193-195)GAA>AAA	p.E65K		NM_022122	NP_071405	Q9H306	MMP27_HUMAN	matrix metalloproteinase 27 precursor	65					collagen catabolic process|proteolysis	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3	all_cancers(8;0.000843)|all_epithelial(12;0.00362)|Lung NSC(15;0.21)	all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)	Epithelial(9;0.0509)|Lung(13;0.0696)|LUSC - Lung squamous cell carcinoma(19;0.13)|all cancers(10;0.176)	BRCA - Breast invasive adenocarcinoma(274;0.0151)		GCTTGCATTTCCCGAATTTTG	0.433													11	28					0	0	0.008291	0	0
MMP3	4314	broad.mit.edu	37	11	102713310	102713310	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:102713310C>T	uc001phj.1	-	3	416	c.351G>A	c.(349-351)AGG>AGA	p.R117R		NM_002422	NP_002413	P08254	MMP3_HUMAN	matrix metalloproteinase 3 preproprotein	117					collagen catabolic process|proteolysis	extracellular space|proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			lung(1)|kidney(1)	2		all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)		BRCA - Breast invasive adenocarcinoma(274;0.0142)	Marimastat(DB00786)|Simvastatin(DB00641)	AATTCACAATCCTGTAGGAGA	0.378													22	48					0	0	0.012319	0	0
MMP13	4322	broad.mit.edu	37	11	102819836	102819836	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:102819836C>T	uc001phl.2	-	7	997	c.969G>A	c.(967-969)ACG>ACA	p.T323T		NM_002427	NP_002418	P45452	MMP13_HUMAN	matrix metalloproteinase 13 preproprotein	323	Hemopexin-like 1.				collagen catabolic process|proteolysis	extracellular space	metalloendopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3		all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)		BRCA - Breast invasive adenocarcinoma(274;0.0144)		AAAATGATTTCGTTAAAAACA	0.423													13	29					0	0	0.013537	0	0
PDGFD	80310	broad.mit.edu	37	11	103870929	103870929	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:103870929C>T	uc001phq.2	-	2	551	c.179G>A	c.(178-180)GGA>GAA	p.G60E	PDGFD_uc001php.2_Missense_Mutation_p.G54E	NM_025208	NP_079484	Q9GZP0	PDGFD_HUMAN	platelet derived growth factor D isoform 1	60	CUB.				positive regulation of cell division	endoplasmic reticulum lumen|extracellular region|Golgi membrane	growth factor activity			upper_aerodigestive_tract(1)|large_intestine(1)	2		Acute lymphoblastic leukemia(157;0.000994)|all_hematologic(158;0.0017)|Melanoma(852;0.0563)|all_neural(303;0.165)		BRCA - Breast invasive adenocarcinoma(274;0.00136)|Epithelial(105;0.111)		GTAGCCGTTTCCTTTCACCTG	0.478													30	57					0	0	0.004289	0	0
GRIA4	2893	broad.mit.edu	37	11	105795202	105795202	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:105795202G>A	uc001pix.2	+	12	2000	c.1554G>A	c.(1552-1554)ATG>ATA	p.M518I	GRIA4_uc001piw.2_Missense_Mutation_p.M518I	NM_000829	NP_000820	P48058	GRIA4_HUMAN	glutamate receptor, ionotrophic, AMPA 4 isoform	518	Extracellular (Potential).				glutamate signaling pathway|synaptic transmission	cell junction|endocytic vesicle membrane|integral to membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity			ovary(3)|skin(3)|lung(1)|central_nervous_system(1)	8		Melanoma(852;0.000902)|Acute lymphoblastic leukemia(157;0.000994)|all_hematologic(158;0.0017)|Breast(348;0.0323)		BRCA - Breast invasive adenocarcinoma(274;0.000147)|Epithelial(105;0.0291)|all cancers(92;0.0899)	L-Glutamic Acid(DB00142)	AGCCCTTCATGAGTTTGGGCA	0.418													35	58					0	0	0.003271	0	0
GUCY1A2	2977	broad.mit.edu	37	11	106558318	106558318	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:106558318G>A	uc001pjg.1	-	8	2546	c.2156C>T	c.(2155-2157)TCC>TTC	p.S719F	GUCY1A2_uc010rvo.1_Missense_Mutation_p.S740F|GUCY1A2_uc009yxn.1_Missense_Mutation_p.S750F	NM_000855	NP_000846	P33402	GCYA2_HUMAN	guanylate cyclase 1, soluble, alpha 2	719					intracellular signal transduction|platelet activation	cytoplasm	GTP binding|guanylate cyclase activity|heme binding			large_intestine(3)|lung(2)|pancreas(2)|ovary(1)	8		all_epithelial(67;3.66e-05)|Melanoma(852;0.000382)|Acute lymphoblastic leukemia(157;0.001)|all_hematologic(158;0.0017)|Breast(348;0.026)|all_neural(303;0.068)		BRCA - Breast invasive adenocarcinoma(274;8.04e-05)|Epithelial(105;0.0036)|all cancers(92;0.0476)		GATGTTGTAGGAAACCTTTTT	0.483													45	64					0	0	0.014410	0	0
CUL5	8065	broad.mit.edu	37	11	107925391	107925391	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:107925391C>T	uc001pjv.2	+	6	1238	c.571C>T	c.(571-573)CCT>TCT	p.P191S	CUL5_uc001pju.2_RNA	NM_003478	NP_003469	Q93034	CUL5_HUMAN	Vasopressin-activated calcium-mobilizing	191					cell cycle arrest|cell proliferation|G1/S transition of mitotic cell cycle|induction of apoptosis by intracellular signals|interspecies interaction between organisms|negative regulation of cell proliferation|ubiquitin-dependent protein catabolic process|viral reproduction	cullin-RING ubiquitin ligase complex|cytosol	calcium channel activity|receptor activity|ubiquitin protein ligase binding			ovary(1)	1		all_cancers(61;7.09e-10)|all_epithelial(67;2.97e-06)|Acute lymphoblastic leukemia(157;3.95e-05)|Melanoma(852;4.48e-05)|all_hematologic(158;0.00014)|Breast(348;0.0258)|all_neural(303;0.072)		BRCA - Breast invasive adenocarcinoma(274;3.58e-05)|Epithelial(105;4.68e-05)|all cancers(92;0.00122)|OV - Ovarian serous cystadenocarcinoma(223;0.217)		TTGTTCTAATCCTGAGGATAA	0.289													6	18					0	0	0.001168	0	0
ATM	472	broad.mit.edu	37	11	108159737	108159737	+	Silent	SNP	T	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:108159737T>C	uc001pkb.1	+	28	4528	c.4143T>C	c.(4141-4143)TTT>TTC	p.F1381F	ATM_uc009yxr.1_Silent_p.F1381F|ATM_uc001pkd.3_Silent_p.F33F|ATM_uc001pke.1_Silent_p.F33F|ATM_uc010rvw.1_Silent_p.F33F|ATM_uc001pkf.2_Silent_p.F33F	NM_000051	NP_000042	Q13315	ATM_HUMAN	ataxia telangiectasia mutated isoform 1	1381	Interaction with ABL1.				cell cycle arrest|cellular response to gamma radiation|DNA damage induced protein phosphorylation|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|double-strand break repair via homologous recombination|G2/M transition DNA damage checkpoint|histone mRNA catabolic process|mitotic cell cycle spindle assembly checkpoint|negative regulation of B cell proliferation|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|pre-B cell allelic exclusion|protein autophosphorylation|reciprocal meiotic recombination|replicative senescence	cytoplasmic membrane-bounded vesicle|nucleoplasm	1-phosphatidylinositol-3-kinase activity|ATP binding|DNA binding|DNA-dependent protein kinase activity|identical protein binding|protein complex binding|protein dimerization activity|protein N-terminus binding			haematopoietic_and_lymphoid_tissue(174)|lung(25)|breast(15)|large_intestine(9)|ovary(5)|kidney(5)|central_nervous_system(4)|upper_aerodigestive_tract(1)|stomach(1)|NS(1)	240		all_cancers(61;9.64e-12)|all_epithelial(67;9.97e-08)|Melanoma(852;2.55e-06)|Acute lymphoblastic leukemia(157;3.95e-05)|all_hematologic(158;0.00014)|Breast(348;0.0258)|all_neural(303;0.072)		Epithelial(105;9.05e-06)|BRCA - Breast invasive adenocarcinoma(274;1.06e-05)|all cancers(92;0.000208)|Colorectal(284;0.116)|OV - Ovarian serous cystadenocarcinoma(223;0.147)		CACCTCATTTTCCATCGCATG	0.343			D|Mis|N|F|S		T-PLL	leukemia|lymphoma|medulloblastoma|glioma		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Ataxia_Telangiectasia	TSP Lung(14;0.12)			18	54					0	0	0.012319	0	0
ATM	472	broad.mit.edu	37	11	108163385	108163385	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:108163385C>T	uc001pkb.1	+	30	4861	c.4476C>T	c.(4474-4476)TCC>TCT	p.S1492S	ATM_uc009yxr.1_Silent_p.S1492S|ATM_uc001pke.1_Silent_p.S144S|ATM_uc001pkf.2_Intron	NM_000051	NP_000042	Q13315	ATM_HUMAN	ataxia telangiectasia mutated isoform 1	1492					cell cycle arrest|cellular response to gamma radiation|DNA damage induced protein phosphorylation|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|double-strand break repair via homologous recombination|G2/M transition DNA damage checkpoint|histone mRNA catabolic process|mitotic cell cycle spindle assembly checkpoint|negative regulation of B cell proliferation|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|pre-B cell allelic exclusion|protein autophosphorylation|reciprocal meiotic recombination|replicative senescence	cytoplasmic membrane-bounded vesicle|nucleoplasm	1-phosphatidylinositol-3-kinase activity|ATP binding|DNA binding|DNA-dependent protein kinase activity|identical protein binding|protein complex binding|protein dimerization activity|protein N-terminus binding			haematopoietic_and_lymphoid_tissue(174)|lung(25)|breast(15)|large_intestine(9)|ovary(5)|kidney(5)|central_nervous_system(4)|upper_aerodigestive_tract(1)|stomach(1)|NS(1)	240		all_cancers(61;9.64e-12)|all_epithelial(67;9.97e-08)|Melanoma(852;2.55e-06)|Acute lymphoblastic leukemia(157;3.95e-05)|all_hematologic(158;0.00014)|Breast(348;0.0258)|all_neural(303;0.072)		Epithelial(105;9.05e-06)|BRCA - Breast invasive adenocarcinoma(274;1.06e-05)|all cancers(92;0.000208)|Colorectal(284;0.116)|OV - Ovarian serous cystadenocarcinoma(223;0.147)		GTAGCTTCTCCCTTTGTTGTG	0.373			D|Mis|N|F|S		T-PLL	leukemia|lymphoma|medulloblastoma|glioma		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Ataxia_Telangiectasia	TSP Lung(14;0.12)			26	109					0	0	0.006320	0	0
DDX10	1662	broad.mit.edu	37	11	108577504	108577504	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:108577504C>T	uc001pkm.2	+	10	1327	c.1262C>T	c.(1261-1263)CCC>CTC	p.P421L	DDX10_uc001pkl.1_Missense_Mutation_p.P421L	NM_004398	NP_004389	Q13206	DDX10_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 10	421	Helicase C-terminal.						ATP binding|ATP-dependent helicase activity|RNA binding|RNA helicase activity			breast(2)|lung(1)|prostate(1)	4		all_cancers(61;1.29e-11)|all_epithelial(67;2.96e-07)|Melanoma(852;1.54e-05)|Acute lymphoblastic leukemia(157;4.24e-05)|all_hematologic(158;0.000141)|Breast(348;0.026)|all_neural(223;0.0729)		BRCA - Breast invasive adenocarcinoma(274;2.48e-05)|Epithelial(105;4.35e-05)|all cancers(92;0.000609)|OV - Ovarian serous cystadenocarcinoma(223;0.133)		ATTTTGCTACCCTCAGAAAAA	0.343			T	NUP98	AML*								19	110					0	0	0.012319	0	0
ARHGAP20	57569	broad.mit.edu	37	11	110456968	110456968	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:110456968C>T	uc001pkz.1	-	13	1672	c.1387G>A	c.(1387-1389)GAT>AAT	p.D463N	ARHGAP20_uc001pky.1_Missense_Mutation_p.D440N|ARHGAP20_uc009yyb.1_Missense_Mutation_p.D427N|ARHGAP20_uc001pla.1_Missense_Mutation_p.D427N|ARHGAP20_uc001plb.2_Missense_Mutation_p.D6N	NM_020809	NP_065860	Q9P2F6	RHG20_HUMAN	Rho GTPase activating protein 20	463	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(3)|kidney(2)	5		all_cancers(61;3.26e-12)|all_epithelial(67;6.09e-07)|Melanoma(852;1.46e-05)|all_hematologic(158;0.000484)|Acute lymphoblastic leukemia(157;0.000967)|all_neural(223;0.0199)|Medulloblastoma(222;0.0425)|Breast(348;0.0544)		Epithelial(105;3.05e-06)|BRCA - Breast invasive adenocarcinoma(274;1.24e-05)|all cancers(92;0.000147)|OV - Ovarian serous cystadenocarcinoma(223;0.0475)		TTCTCTTCATCATTTCCTTGA	0.249													13	63					0	0	0.004007	0	0
ARHGAP20	57569	broad.mit.edu	37	11	110461427	110461427	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:110461427C>T	uc001pkz.1	-	12	1535	c.1250G>A	c.(1249-1251)GGA>GAA	p.G417E	ARHGAP20_uc001pky.1_Missense_Mutation_p.G394E|ARHGAP20_uc009yyb.1_Missense_Mutation_p.G381E|ARHGAP20_uc001pla.1_Missense_Mutation_p.G381E|ARHGAP20_uc001plb.2_5'Flank	NM_020809	NP_065860	Q9P2F6	RHG20_HUMAN	Rho GTPase activating protein 20	417	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(3)|kidney(2)	5		all_cancers(61;3.26e-12)|all_epithelial(67;6.09e-07)|Melanoma(852;1.46e-05)|all_hematologic(158;0.000484)|Acute lymphoblastic leukemia(157;0.000967)|all_neural(223;0.0199)|Medulloblastoma(222;0.0425)|Breast(348;0.0544)		Epithelial(105;3.05e-06)|BRCA - Breast invasive adenocarcinoma(274;1.24e-05)|all cancers(92;0.000147)|OV - Ovarian serous cystadenocarcinoma(223;0.0475)		TACTTCGACTCCAGAATTCAA	0.393													11	19					0	0	0.013537	0	0
C11orf53	341032	broad.mit.edu	37	11	111156412	111156412	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:111156412T>C	uc001plc.2	+	4	491	c.344T>C	c.(343-345)CTC>CCC	p.L115P		NM_198498	NP_940900	Q8IXP5	CK053_HUMAN	hypothetical protein LOC341032	115											0		all_cancers(61;2.05e-09)|Melanoma(852;4.04e-05)|all_epithelial(67;6.15e-05)|all_hematologic(158;0.000826)|Acute lymphoblastic leukemia(157;0.000966)|all_neural(223;0.0332)|Medulloblastoma(222;0.0425)|Breast(348;0.147)		Epithelial(105;1.7e-06)|BRCA - Breast invasive adenocarcinoma(274;3.16e-06)|all cancers(92;2.88e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.0507)		CCTGACGGTCTCAGCCAGCCT	0.587													16	51					0	0	0.004990	0	0
POU2AF1	5450	broad.mit.edu	37	11	111225262	111225262	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:111225262C>T	uc001plg.3	-	5	750	c.495G>A	c.(493-495)CTG>CTA	p.L165L		NM_006235	NP_006226	Q16633	OBF1_HUMAN	POU class 2 associating factor 1	165					humoral immune response|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nucleus	protein binding|transcription coactivator activity			kidney(1)	1		all_cancers(61;1.36e-12)|all_epithelial(67;1.87e-07)|Melanoma(852;1.46e-05)|Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0017)|all_neural(223;0.0146)|Medulloblastoma(222;0.0245)|Breast(348;0.0389)		Epithelial(105;1.01e-06)|BRCA - Breast invasive adenocarcinoma(274;3.12e-06)|all cancers(92;1.8e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.0364)		CTGGGCCCTCCAGCGGGGGCC	0.652			T	BCL6	NHL								4	23					0	0	0.009096	0	0
FDXACB1	91893	broad.mit.edu	37	11	111749799	111749799	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:111749799G>A	uc001pmc.3	-	1	355	c.58C>T	c.(58-60)CTG>TTG	p.L20L	ALG9_uc010rwo.1_5'UTR|FDXACB1_uc009yyi.2_5'UTR|C11orf1_uc001pmd.2_5'Flank|C11orf1_uc001pme.2_5'Flank	NM_138378	NP_612387	Q9BRP7	FDXA1_HUMAN	ferredoxin-fold anticodon binding domain	20					phenylalanyl-tRNA aminoacylation|tRNA processing		ATP binding|magnesium ion binding|phenylalanine-tRNA ligase activity|tRNA binding				0						GTTTCGCTCAGAGCGGCGGCG	0.657											OREG0021330	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	10	29					0	0	0.003163	0	0
BCO2	83875	broad.mit.edu	37	11	112085548	112085548	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:112085548C>T	uc001pnf.2	+	10	1513	c.1396C>T	c.(1396-1398)CCT>TCT	p.P466S	BCO2_uc001pne.1_Missense_Mutation_p.P293S|BCO2_uc001png.2_Missense_Mutation_p.P393S|BCO2_uc001pnh.2_Missense_Mutation_p.P432S|BCO2_uc010rwt.1_Missense_Mutation_p.P361S|BCO2_uc009yyn.2_Missense_Mutation_p.P432S|BCO2_uc001pni.2_Missense_Mutation_p.P432S	NM_031938	NP_114144	Q9BYV7	BCDO2_HUMAN	beta-carotene dioxygenase 2 isoform a	466					carotene metabolic process|retinal metabolic process|retinoic acid metabolic process		metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen				0						CATTGAATTTCCTCAGATCTA	0.398													16	40					0	0	0.006122	0	0
DRD2	1813	broad.mit.edu	37	11	113283471	113283471	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:113283471G>A	uc001pnz.2	-	6	1266	c.945C>T	c.(943-945)CTC>CTT	p.L315L	DRD2_uc010rwv.1_Silent_p.L314L|DRD2_uc001poa.3_Silent_p.L315L|DRD2_uc001pob.3_Silent_p.L286L	NM_000795	NP_000786	P14416	DRD2_HUMAN	dopamine receptor D2 isoform long	315	Cytoplasmic (By similarity).|Interaction with PPP1R9B (By similarity).				activation of phospholipase C activity by dopamine receptor signaling pathway|adenohypophysis development|adult walking behavior|arachidonic acid secretion|axonogenesis|behavioral response to cocaine|behavioral response to ethanol|branching morphogenesis of a nerve|cerebral cortex GABAergic interneuron migration|circadian regulation of gene expression|elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger|inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|intracellular protein kinase cascade|negative regulation of blood pressure|negative regulation of calcium ion transport via voltage-gated calcium channel activity|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of dopamine receptor signaling pathway|negative regulation of protein kinase B signaling cascade|negative regulation of protein secretion|negative regulation of synaptic transmission, glutamatergic|neurological system process involved in regulation of systemic arterial blood pressure|peristalsis|phosphatidylinositol metabolic process|positive regulation of dopamine uptake|positive regulation of growth hormone secretion|positive regulation of neuroblast proliferation|prepulse inhibition|protein localization|regulation of heart rate|regulation of long-term neuronal synaptic plasticity|regulation of potassium ion transport|regulation of sodium ion transport|regulation of synaptic transmission, GABAergic|release of sequestered calcium ion into cytosol|response to amphetamine|response to drug|response to histamine|response to morphine|sensory perception of smell|synapse assembly|temperature homeostasis|visual learning	integral to plasma membrane	dopamine D2 receptor activity|dopamine receptor activity, coupled via Gi/Go|drug binding|potassium channel regulator activity|protein binding			pancreas(1)|skin(1)	2		all_cancers(61;3.91e-16)|all_epithelial(67;2.95e-09)|Melanoma(852;1.46e-05)|all_hematologic(158;0.00014)|Acute lymphoblastic leukemia(157;0.000977)|Breast(348;0.0101)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.0494)		BRCA - Breast invasive adenocarcinoma(274;5.77e-06)|Epithelial(105;6.66e-05)|all cancers(92;0.000307)|OV - Ovarian serous cystadenocarcinoma(223;0.216)	Acetophenazine(DB01063)|Amantadine(DB00915)|Apomorphine(DB00714)|Aripiprazole(DB01238)|Bromocriptine(DB01200)|Buspirone(DB00490)|Cabergoline(DB00248)|Carphenazine(DB01038)|Chlorpromazine(DB00477)|Chlorprothixene(DB01239)|Cinnarizine(DB00568)|Clozapine(DB00363)|Domperidone(DB01184)|Droperidol(DB00450)|Ergotamine(DB00696)|Flupenthixol(DB00875)|Fluphenazine(DB00623)|Fluspirilene(DB04842)|Haloperidol(DB00502)|Levodopa(DB01235)|Lisuride(DB00589)|Loxapine(DB00408)|Mesoridazine(DB00933)|Metoclopramide(DB01233)|Minaprine(DB00805)|Molindone(DB01618)|Olanzapine(DB00334)|Paliperidone(DB01267)|Pergolide(DB01186)|Perphenazine(DB00850)|Pimozide(DB01100)|Pramipexole(DB00413)|Prochlorperazine(DB00433)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Quetiapine(DB01224)|Remoxipride(DB00409)|Risperidone(DB00734)|Ropinirole(DB00268)|Sertindole(DB06144)|Sulpiride(DB00391)|Thiethylperazine(DB00372)|Thioridazine(DB00679)|Tranylcypromine(DB00752)|Trifluoperazine(DB00831)|Triflupromazine(DB00508)|Ziprasidone(DB00246)|Zuclopenthixol(DB01624)	GAGTGCTGTGGAGACCATGGT	0.612													18	37					0	0	0.002780	0	0
CLDN25	644672	broad.mit.edu	37	11	113650664	113650664	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:113650664G>A	uc009yyw.1	+	1	147	c.147G>A	c.(145-147)GGG>GGA	p.G49G		NM_001101389	NP_001094859	C9JDP6	CLD25_HUMAN	claudin 25	49	Extracellular (Potential).					integral to membrane|tight junction	structural molecule activity				0						GGATCATGGGGATTTGGGAGG	0.567													22	54					0	0	0.014323	0	0
CLDN25	644672	broad.mit.edu	37	11	113650814	113650814	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:113650814C>T	uc009yyw.1	+	1	297	c.297C>T	c.(295-297)AGC>AGT	p.S99S		NM_001101389	NP_001094859	C9JDP6	CLD25_HUMAN	claudin 25	99	Helical; (Potential).					integral to membrane|tight junction	structural molecule activity				0						TGCTCTGCAGCTTTGGGTCTG	0.557													59	104					0	0	0.014410	0	0
NNMT	4837	broad.mit.edu	37	11	114168875	114168875	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:114168875G>A	uc001por.1	+	4	621	c.357G>A	c.(355-357)GGG>GGA	p.G119G	NNMT_uc001pos.1_Silent_p.G119G	NM_006169	NP_006160	P40261	NNMT_HUMAN	nicotinamide N-methyltransferase	119					xenobiotic metabolic process	cytosol	nicotinamide N-methyltransferase activity|pyridine N-methyltransferase activity			ovary(1)	1		all_cancers(61;4.83e-16)|all_epithelial(67;7.28e-09)|all_hematologic(158;0.000135)|Melanoma(852;0.000902)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.0906)		BRCA - Breast invasive adenocarcinoma(274;2.79e-06)|Epithelial(105;1.32e-05)|all cancers(92;0.000144)|OV - Ovarian serous cystadenocarcinoma(223;0.128)	Niacin(DB00627)	ATCTTGAAGGGAACAGGTAGA	0.488													8	35					0	0	0.003080	0	0
FAM55D	54827	broad.mit.edu	37	11	114453029	114453029	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:114453029C>T	uc001ppc.2	-	3	992	c.811G>A	c.(811-813)GAA>AAA	p.E271K	FAM55D_uc001ppd.2_Intron	NM_001077639	NP_001071107	Q6UWF7	FA55D_HUMAN	hypothetical protein LOC54827 isoform 1	271						extracellular region				ovary(2)|skin(2)	4		all_cancers(61;8.53e-16)|all_epithelial(67;1.71e-08)|all_hematologic(158;3.05e-05)|Melanoma(852;0.000902)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0194)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.0906)		BRCA - Breast invasive adenocarcinoma(274;2.82e-06)|Epithelial(105;0.000129)|all cancers(92;0.000938)		AGGCTCTTTTCTTGTTTGCTA	0.383													11	33					0	0	0.010729	0	0
APOA5	116519	broad.mit.edu	37	11	116661636	116661636	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:116661636C>T	uc001ppr.2	-	3	317	c.309G>A	c.(307-309)GTG>GTA	p.V103V	ZNF259_uc001ppp.2_5'Flank|ZNF259_uc009yzd.2_5'Flank|ZNF259_uc001ppq.2_5'Flank|APOA5_uc009yze.2_Silent_p.V103V|APOA5_uc009yzf.2_Silent_p.V103V|APOA5_uc009yzg.2_Silent_p.V129V	NM_052968	NP_443200	Q6Q788	APOA5_HUMAN	apolipoprotein AV precursor	103	Potential.				acylglycerol homeostasis|cholesterol homeostasis|lipid transport|lipoprotein metabolic process|positive regulation of fatty acid biosynthetic process|positive regulation of lipoprotein lipase activity|positive regulation of receptor-mediated endocytosis|positive regulation of triglyceride catabolic process|positive regulation of very-low-density lipoprotein particle remodeling|tissue regeneration|triglyceride catabolic process|triglyceride homeostasis	chylomicron|high-density lipoprotein particle|very-low-density lipoprotein particle	enzyme binding|heparin binding|lipoprotein lipase activator activity|low-density lipoprotein particle receptor binding|phosphatidylcholine binding				0	all_hematologic(175;0.0487)	all_cancers(61;3.31e-09)|all_epithelial(67;8.03e-06)|Breast(348;0.0126)|Melanoma(852;0.0153)|Acute lymphoblastic leukemia(157;0.0257)|Medulloblastoma(222;0.0425)|all_hematologic(158;0.0433)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|Epithelial(105;4.93e-06)|all cancers(92;0.000123)|OV - Ovarian serous cystadenocarcinoma(223;0.149)		GGCGAGCCTTCACCTCCTCCA	0.642													25	274					0	0	0.003330	0	0
APOA1	335	broad.mit.edu	37	11	116707873	116707873	+	Missense_Mutation	SNP	C	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:116707873C>A	uc001ppu.1	-	3	123	c.44G>T	c.(43-45)GGG>GTG	p.G15V	APOA1_uc001ppv.1_Missense_Mutation_p.G15V	NM_000039	NP_000030	P02647	APOA1_HUMAN	apolipoprotein A-I preproprotein	15					Cdc42 protein signal transduction|cholesterol efflux|cholesterol homeostasis|cholesterol import|G-protein coupled receptor protein signaling pathway|high-density lipoprotein particle assembly|negative regulation of cytokine secretion involved in immune response|negative regulation of interleukin-1 beta secretion|negative regulation of very-low-density lipoprotein particle remodeling|phosphatidylcholine biosynthetic process|phospholipid efflux|platelet activation|platelet degranulation|positive regulation of cholesterol esterification|positive regulation of hydrolase activity|protein stabilization|reverse cholesterol transport	endocytic vesicle|endoplasmic reticulum lumen|plasma membrane|spherical high-density lipoprotein particle|stored secretory granule|very-low-density lipoprotein particle	apolipoprotein A-I receptor binding|beta-amyloid binding|cholesterol binding|cholesterol transporter activity|enzyme binding|high-density lipoprotein particle receptor binding|identical protein binding|phosphatidylcholine-sterol O-acyltransferase activator activity|phospholipid binding				0	all_hematologic(175;0.0487)	Breast(348;0.0126)|Medulloblastoma(222;0.0425)|all_hematologic(192;0.0564)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;8.54e-06)|Epithelial(105;1.59e-05)|all cancers(92;0.000162)|OV - Ovarian serous cystadenocarcinoma(223;0.148)		AGCCTGGCTCCCTGAGGGTGG	0.622													14	184					1.05317e-09	1.13347e-09	0.002450	1	0
SIK3	23387	broad.mit.edu	37	11	116732000	116732000	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:116732000G>A	uc001ppy.2	-	18	2133	c.2097C>T	c.(2095-2097)ATC>ATT	p.I699I	SIK3_uc001ppz.2_Silent_p.I598I|SIK3_uc001pqa.2_Silent_p.I699I|SIK3_uc001ppw.2_Silent_p.I116I|SIK3_uc001ppx.2_Intron|SIK3_uc001pqb.2_Silent_p.I2I	NM_025164	NP_079440	Q9Y2K2	SIK3_HUMAN	serine/threonine-protein kinase QSK	699	Gln-rich.					cytoplasm	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			ovary(4)|breast(3)|stomach(2)|lung(1)|skin(1)|kidney(1)	12						CGTGAGGCTGGATCATGGCAC	0.498													44	294					0	0	0.014410	0	0
DSCAML1	57453	broad.mit.edu	37	11	117299164	117299164	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:117299164C>T	uc001prh.1	-	33	6224	c.6222G>A	c.(6220-6222)GGG>GGA	p.G2074G		NM_020693	NP_065744	Q8TD84	DSCL1_HUMAN	Down syndrome cell adhesion molecule like 1	2014	Cytoplasmic (Potential).|Pro-rich.				axonogenesis|brain development|cell fate determination|dorsal/ventral pattern formation|embryonic skeletal system morphogenesis|homophilic cell adhesion	cell surface|integral to membrane|plasma membrane	protein homodimerization activity			ovary(3)|large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)	8	all_hematologic(175;0.0487)	Breast(348;0.0424)|Medulloblastoma(222;0.0523)|all_hematologic(192;0.232)		BRCA - Breast invasive adenocarcinoma(274;9.12e-06)|Epithelial(105;0.00172)		TGTGTGGGCCCCCGGCTCGTG	0.736													7	9					0	0	0.004482	0	0
DSCAML1	57453	broad.mit.edu	37	11	117301631	117301631	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:117301631G>A	uc001prh.1	-	32	5675	c.5673C>T	c.(5671-5673)ATC>ATT	p.I1891I		NM_020693	NP_065744	Q8TD84	DSCL1_HUMAN	Down syndrome cell adhesion molecule like 1	1831	Cytoplasmic (Potential).				axonogenesis|brain development|cell fate determination|dorsal/ventral pattern formation|embryonic skeletal system morphogenesis|homophilic cell adhesion	cell surface|integral to membrane|plasma membrane	protein homodimerization activity			ovary(3)|large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)	8	all_hematologic(175;0.0487)	Breast(348;0.0424)|Medulloblastoma(222;0.0523)|all_hematologic(192;0.232)		BRCA - Breast invasive adenocarcinoma(274;9.12e-06)|Epithelial(105;0.00172)		AGCACTCGGTGATCTCAAACT	0.582													18	117					0	0	0.006122	0	0
IL10RA	3587	broad.mit.edu	37	11	117870289	117870289	+	Missense_Mutation	SNP	T	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:117870289T>A	uc001prv.2	+	7	1747	c.1670T>A	c.(1669-1671)CTC>CAC	p.L557H	IL10RA_uc010rxl.1_Missense_Mutation_p.L537H|IL10RA_uc010rxm.1_Missense_Mutation_p.L537H|IL10RA_uc010rxn.1_Missense_Mutation_p.L408H|IL10RA_uc001prw.2_Missense_Mutation_p.L408H	NM_001558	NP_001549	Q13651	I10R1_HUMAN	interleukin 10 receptor, alpha precursor	557	Cytoplasmic (Potential).					integral to membrane|plasma membrane	interleukin-10 receptor activity			ovary(1)	1	all_hematologic(175;0.0487)	Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;3.07e-05)|Epithelial(105;0.00108)		CCAGGTGGTCTCCTGGGCAGC	0.572													31	19					0	0	0.012213	0	0
AMICA1	120425	broad.mit.edu	37	11	118074198	118074198	+	Silent	SNP	C	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:118074198C>A	uc001psk.2	-	6	891	c.717G>T	c.(715-717)GGG>GGT	p.G239G	AMICA1_uc001psg.2_Silent_p.G49G|AMICA1_uc001psh.2_Silent_p.G200G|AMICA1_uc009yzw.1_RNA|AMICA1_uc001psi.2_Silent_p.G229G|AMICA1_uc001psj.2_Silent_p.G228G|AMICA1_uc010rxw.1_Silent_p.G200G|AMICA1_uc010rxx.1_Silent_p.G239G|AMICA1_uc001psl.1_Silent_p.G195G	NM_001098526	NP_001091996	Q86YT9	JAML1_HUMAN	adhesion molecule, interacts with CXADR antigen	239	Ig-like V-type 2.|Extracellular (Potential).				blood coagulation|cell adhesion|leukocyte migration|regulation of immune response	cell junction|integral to membrane				ovary(1)	1	all_hematologic(175;0.046)	Medulloblastoma(222;0.0425)|Breast(348;0.181)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;3.4e-05)		ACACCAGGTTCCCTAGGTGGA	0.527													59	65					3.30712e-30	3.57737e-30	0.014410	1	0
UBE4A	9354	broad.mit.edu	37	11	118243308	118243308	+	Silent	SNP	C	T	T	rs149631434	byFrequency	TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:118243308C>T	uc001psw.2	+	6	777	c.648C>T	c.(646-648)ACC>ACT	p.T216T	UBE4A_uc001psv.2_Silent_p.T216T	NM_004788	NP_004779	Q14139	UBE4A_HUMAN	ubiquitination factor E4A	216					ubiquitin-dependent protein catabolic process	ubiquitin ligase complex	protein binding			ovary(2)|upper_aerodigestive_tract(1)|breast(1)|kidney(1)	5	all_hematologic(175;0.046)	Medulloblastoma(222;0.0425)|Breast(348;0.181)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;3.28e-05)		TTCTTCTCACCCCAGAGATCT	0.468													5	47					0	0	0.000602	0	0
PHLDB1	23187	broad.mit.edu	37	11	118513099	118513099	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:118513099C>T	uc001ptr.1	+	14	3217	c.2864C>T	c.(2863-2865)TCC>TTC	p.S955F	PHLDB1_uc001pts.2_Missense_Mutation_p.S955F|PHLDB1_uc001ptt.2_Intron|PHLDB1_uc001ptu.1_RNA|PHLDB1_uc001ptv.1_Missense_Mutation_p.S755F|PHLDB1_uc001ptw.1_Intron|PHLDB1_uc009zai.1_Intron|PHLDB1_uc001ptx.1_Intron|PHLDB1_uc010ryi.1_Missense_Mutation_p.S98F|PHLDB1_uc010ryj.1_Missense_Mutation_p.S93F	NM_015157	NP_055972	Q86UU1	PHLB1_HUMAN	pleckstrin homology-like domain, family B,	955											0	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0523)|all_hematologic(192;0.0735)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;3.4e-05)		GCCAAAGCTTCCCGTCAGCTG	0.637													25	36					0	0	0.006320	0	0
BCL9L	283149	broad.mit.edu	37	11	118769796	118769796	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:118769796G>A	uc001pug.2	-	8	4793	c.3828C>T	c.(3826-3828)CCC>CCT	p.P1276P	BCL9L_uc009zal.2_Silent_p.P1271P	NM_182557	NP_872363	Q86UU0	BCL9L_HUMAN	B-cell CLL/lymphoma 9-like	1276	Pro-rich.				negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		transcription coactivator activity			ovary(1)|pancreas(1)	2	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0425)|all_hematologic(192;0.103)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.66e-05)		GGTGCTGCTGGGGAGGCATGG	0.716													6	10					0	0	0.001984	0	0
ABCG4	64137	broad.mit.edu	37	11	119020882	119020882	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:119020882C>T	uc001pvs.2	+	2	543	c.207C>T	c.(205-207)TCC>TCT	p.S69S	ABCG4_uc009zar.2_Silent_p.S69S	NM_022169	NP_071452	Q9H172	ABCG4_HUMAN	ATP-binding cassette, subfamily G, member 4	69	Cytoplasmic (Potential).|ABC transporter.				cholesterol efflux	integral to membrane	ATP binding|ATPase activity|protein heterodimerization activity|protein homodimerization activity			ovary(2)	2	all_hematologic(175;0.0977)	Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.7e-05)		TGTCCTATTCCGTGCGGGAGG	0.617													52	69					0	0	0.014410	0	0
NLRX1	79671	broad.mit.edu	37	11	119050756	119050756	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:119050756C>T	uc001pvu.2	+	7	2241	c.2026C>T	c.(2026-2028)CTT>TTT	p.L676F	NLRX1_uc010rzc.1_Missense_Mutation_p.L498F|NLRX1_uc001pvv.2_Missense_Mutation_p.L676F|NLRX1_uc001pvw.2_Missense_Mutation_p.L676F|NLRX1_uc001pvx.2_Missense_Mutation_p.L676F	NM_024618	NP_078894	Q86UT6	NLRX1_HUMAN	NLR family member X1 isoform 1	676	Required for the repression of MAVS- induced interferon signaling.				innate immune response|interspecies interaction between organisms|negative regulation of type I interferon production	mitochondrial outer membrane	ATP binding			ovary(1)|skin(1)	2	all_hematologic(175;0.0977)	Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.7e-05)		ATCAGAGCTCCTTGACCACCT	0.607													4	14					0	0	0.009096	0	0
TRIM29	23650	broad.mit.edu	37	11	119998247	119998247	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:119998247C>T	uc001pwz.2	-	3	1055	c.931G>A	c.(931-933)GAG>AAG	p.E311K	TRIM29_uc010rzi.1_Missense_Mutation_p.E50K|TRIM29_uc010rzj.1_Missense_Mutation_p.E44K|TRIM29_uc001pxa.2_RNA	NM_012101	NP_036233	Q14134	TRI29_HUMAN	tripartite motif protein TRIM29	311	Potential.				transcription from RNA polymerase II promoter	cytoplasm	protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|breast(1)|kidney(1)|skin(1)	4		Breast(109;0.00117)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.37e-06)		AAGTTCTGCTCCAGGATGGCC	0.567													14	17					0	0	0.002450	0	0
TECTA	7007	broad.mit.edu	37	11	120979942	120979942	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:120979942C>T	uc010rzo.1	+	3	221	c.221C>T	c.(220-222)TCC>TTC	p.S74F		NM_005422	NP_005413	O75443	TECTA_HUMAN	tectorin alpha precursor	74					cell-matrix adhesion|sensory perception of sound	anchored to membrane|plasma membrane|proteinaceous extracellular matrix				breast(6)|ovary(2)|skin(2)	10	all_hematologic(175;0.208)	Breast(109;0.000766)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.04e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.166)		GGAGTTGTTTCCTTCAATGTG	0.458													10	17					0	0	0.006214	0	0
TECTA	7007	broad.mit.edu	37	11	120979979	120979979	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:120979979C>T	uc010rzo.1	+	3	258	c.258C>T	c.(256-258)TCC>TCT	p.S86S		NM_005422	NP_005413	O75443	TECTA_HUMAN	tectorin alpha precursor	86					cell-matrix adhesion|sensory perception of sound	anchored to membrane|plasma membrane|proteinaceous extracellular matrix				breast(6)|ovary(2)|skin(2)	10	all_hematologic(175;0.208)	Breast(109;0.000766)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.04e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.166)		CGCCAGAATCCTTTCCCCTGA	0.488													8	21					0	0	0.004482	0	0
TECTA	7007	broad.mit.edu	37	11	120984337	120984337	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:120984337C>T	uc010rzo.1	+	5	700	c.700C>T	c.(700-702)CAG>TAG	p.Q234*		NM_005422	NP_005413	O75443	TECTA_HUMAN	tectorin alpha precursor	234	NIDO.				cell-matrix adhesion|sensory perception of sound	anchored to membrane|plasma membrane|proteinaceous extracellular matrix				breast(6)|ovary(2)|skin(2)	10	all_hematologic(175;0.208)	Breast(109;0.000766)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.04e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.166)		CGTGAATATCCAGGAGACCAC	0.493													4	31					0	0	0.009096	0	0
TECTA	7007	broad.mit.edu	37	11	121061511	121061511	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:121061511C>T	uc010rzo.1	+	23	6464	c.6464C>T	c.(6463-6465)TCA>TTA	p.S2155L		NM_005422	NP_005413	O75443	TECTA_HUMAN	tectorin alpha precursor	2155					cell-matrix adhesion|sensory perception of sound	anchored to membrane|plasma membrane|proteinaceous extracellular matrix				breast(6)|ovary(2)|skin(2)	10	all_hematologic(175;0.208)	Breast(109;0.000766)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.04e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.166)		GGCACGACCTCATAATTAACT	0.358													5	15					0	0	0.000602	0	0
SORL1	6653	broad.mit.edu	37	11	121393342	121393342	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:121393342C>T	uc001pxx.2	+	10	1532	c.1452C>T	c.(1450-1452)CTC>CTT	p.L484L		NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class	484	Extracellular (Potential).				cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		TCAGTCAGCTCCTCAACCTCC	0.552													40	67					0	0	0.011902	0	0
SORL1	6653	broad.mit.edu	37	11	121414293	121414293	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:121414293C>T	uc001pxx.2	+	13	1802	c.1722C>T	c.(1720-1722)TTC>TTT	p.F574F		NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class	574	Extracellular (Potential).				cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		GGAAAACATTCATCTTCTCTG	0.443													8	60					0	0	0.004482	0	0
SORL1	6653	broad.mit.edu	37	11	121437754	121437754	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:121437754C>T	uc001pxx.2	+	22	3235	c.3155C>T	c.(3154-3156)CCA>CTA	p.P1052L		NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class	1052	Extracellular (Potential).|EGF-like.				cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		AGTGTGCTTCCATCAGGGGAC	0.532													6	23					0	0	0.001984	0	0
SORL1	6653	broad.mit.edu	37	11	121457003	121457003	+	Missense_Mutation	SNP	G	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:121457003G>C	uc001pxx.2	+	27	3859	c.3779G>C	c.(3778-3780)CGT>CCT	p.R1260P	SORL1_uc010rzp.1_Missense_Mutation_p.R106P	NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class	1260	Extracellular (Potential).|LDL-receptor class A 5.				cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		GATGGTCTGCGTGATTGCTCT	0.448													13	117					0	0	0.002450	0	0
SORL1	6653	broad.mit.edu	37	11	121489489	121489489	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:121489489G>A	uc001pxx.2	+	42	5691	c.5611G>A	c.(5611-5613)GGT>AGT	p.G1871S	SORL1_uc010rzp.1_Missense_Mutation_p.G717S|SORL1_uc010rzq.1_Missense_Mutation_p.G486S	NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class	1871	Extracellular (Potential).|Fibronectin type-III 4.				cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		CCAGGTTTATGGTATTTTCTA	0.453													9	66					0	0	0.010729	0	0
CRTAM	56253	broad.mit.edu	37	11	122722430	122722430	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:122722430C>T	uc001pyj.2	+	3	223	c.223C>T	c.(223-225)CAT>TAT	p.H75Y		NM_019604	NP_062550	O95727	CRTAM_HUMAN	class-I MHC-restricted T cell associated	75	Ig-like V-type.|Extracellular (Potential).				cell recognition|detection of tumor cell|positive regulation of cytokine secretion|positive regulation of natural killer cell mediated cytotoxicity directed against tumor cell target	integral to membrane|plasma membrane	receptor binding			ovary(1)	1		Breast(109;0.00249)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.28e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0308)		CCAGCTTCTTCATCACTCGGC	0.378													25	35					0	0	0.004656	0	0
LOC341056	341056	broad.mit.edu	37	11	122889261	122889261	+	RNA	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:122889261G>A	uc010rzt.1	+	1		c.988G>A				NR_027288				full-length cDNA clone CS0DC021YJ17 of Neuroblastoma Cot 25-normalized of Homo sapiens (human).												0						TGGTTGGAGGGATTTTGGCAC	0.512													5	17					0	0	0.000602	0	0
OR6X1	390260	broad.mit.edu	37	11	123624392	123624392	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:123624392G>A	uc010rzy.1	-	1	835	c.835C>T	c.(835-837)CTC>TTC	p.L279F		NM_001005188	NP_001005188	Q8NH79	OR6X1_HUMAN	olfactory receptor, family 6, subfamily X,	279	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Breast(109;0.0109)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0279)		AGGGGGGTGAGGATAGTATTT	0.448													22	35					0	0	0.010504	0	0
TMEM225	338661	broad.mit.edu	37	11	123753976	123753976	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:123753976C>T	uc001pzi.2	-	4	755	c.547G>A	c.(547-549)GAA>AAA	p.E183K		NM_001013743	NP_001013765	Q6GV28	TM225_HUMAN	transmembrane protein 225	183						integral to membrane				upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	3						TTCTCAGATTCCTTACATTCG	0.423													5	25					0	0	0.000602	0	0
OR4D5	219875	broad.mit.edu	37	11	123810525	123810525	+	Missense_Mutation	SNP	T	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:123810525T>G	uc001pzk.1	+	1	202	c.202T>G	c.(202-204)TTC>GTC	p.F68V		NM_001001965	NP_001001965	Q8NGN0	OR4D5_HUMAN	olfactory receptor, family 4, subfamily D,	68	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0399)		CAATCTTTCTTTCCTGGACTT	0.463													6	53					0	0	0.001984	0	0
OR6T1	219874	broad.mit.edu	37	11	123813896	123813896	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:123813896G>A	uc010sab.1	-	1	650	c.650C>T	c.(649-651)TCC>TTC	p.S217F		NM_001005187	NP_001005187	Q8NGN1	OR6T1_HUMAN	olfactory receptor, family 6, subfamily T,	217	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0401)		GCAGGCATAGGAAACTGAGGT	0.542													4	43					0	0	0.009096	0	0
OR10S1	219873	broad.mit.edu	37	11	123847434	123847434	+	Missense_Mutation	SNP	C	T	T	rs146618461		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:123847434C>T	uc001pzm.1	-	1	965	c.965G>A	c.(964-966)CGA>CAA	p.R322Q		NM_001004474	NP_001004474	Q8NGN2	O10S1_HUMAN	olfactory receptor, family 10, subfamily S,	322	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0399)		TGTAGACTCTCGGAAGCTGCT	0.463													17	23					0	0	0.004990	0	0
OR10S1	219873	broad.mit.edu	37	11	123848225	123848225	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:123848225G>A	uc001pzm.1	-	1	174	c.174C>T	c.(172-174)ATC>ATT	p.I58I		NM_001004474	NP_001004474	Q8NGN2	O10S1_HUMAN	olfactory receptor, family 10, subfamily S,	58	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0399)		CAGTTAGGAGGATGAGGAGAT	0.527													3	11					0	0	0.004672	0	0
OR10G8	219869	broad.mit.edu	37	11	123900509	123900509	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:123900509C>T	uc001pzp.1	+	1	180	c.180C>T	c.(178-180)TTC>TTT	p.F60F		NM_001004464	NP_001004464	Q8NGN5	O10G8_HUMAN	olfactory receptor, family 10, subfamily G,	60	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		TGTACTACTTCCTCACCAACC	0.532													9	62					0	0	0.006214	0	0
VWA5A	4013	broad.mit.edu	37	11	124007909	124007909	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:124007909C>T	uc001pzu.2	+	15	2022	c.1813C>T	c.(1813-1815)CAT>TAT	p.H605Y	VWA5A_uc001pzt.2_Missense_Mutation_p.H605Y	NM_001130142	NP_001123614	O00534	VMA5A_HUMAN	BCSC-1 isoform 1	605										upper_aerodigestive_tract(1)|ovary(1)	2						GCCTCTGGCTCATAGGGACGT	0.453													15	18					0	0	0.004007	0	0
OR8D2	283160	broad.mit.edu	37	11	124189535	124189535	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:124189535G>A	uc010sah.1	-	1	559	c.559C>T	c.(559-561)CTG>TTG	p.L187L		NM_001002918	NP_001002918	Q9GZM6	OR8D2_HUMAN	olfactory receptor, family 8, subfamily D,	187	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)|central_nervous_system(1)|pancreas(1)	3		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0525)		GAGCAAGACAGAGTCAATAAG	0.438													16	19					0	0	0.004990	0	0
OR8D2	283160	broad.mit.edu	37	11	124189845	124189845	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:124189845C>T	uc010sah.1	-	1	249	c.249G>A	c.(247-249)GTG>GTA	p.V83V		NM_001002918	NP_001002918	Q9GZM6	OR8D2_HUMAN	olfactory receptor, family 8, subfamily D,	83	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)|central_nervous_system(1)|pancreas(1)	3		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0525)		GAACAAAGTTCACCAGCATCT	0.388													4	24					0	0	0.009096	0	0
OR8B2	26595	broad.mit.edu	37	11	124252580	124252580	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:124252580G>A	uc010sai.1	-	1	660	c.660C>T	c.(658-660)TTC>TTT	p.F220F		NM_001005468	NP_001005468	Q96RD0	OR8B2_HUMAN	olfactory receptor, family 8, subfamily B,	220	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0277)		TAGTGACAATGAAAACATAAG	0.413													7	81					0	0	0.006214	0	0
OR8A1	390275	broad.mit.edu	37	11	124440379	124440379	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:124440379C>T	uc010san.1	+	1	415	c.415C>T	c.(415-417)CGC>TGC	p.R139C		NM_001005194	NP_001005194	Q8NGG7	OR8A1_HUMAN	olfactory receptor, family 8, subfamily A,	139	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0214)		GGCCTACGACCGCTATGTTGC	0.493													5	37					0	0	0.000602	0	0
ROBO4	54538	broad.mit.edu	37	11	124761258	124761258	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:124761258C>T	uc001qbg.2	-	12	2025	c.1885G>A	c.(1885-1887)GGA>AGA	p.G629R	ROBO4_uc010sas.1_Missense_Mutation_p.G484R|ROBO4_uc001qbh.2_Missense_Mutation_p.G519R|ROBO4_uc001qbi.2_Missense_Mutation_p.G187R|ROBO4_uc010sat.1_Missense_Mutation_p.G187R	NM_019055	NP_061928	Q8WZ75	ROBO4_HUMAN	roundabout homolog 4, magic roundabout	629					angiogenesis|cell differentiation	integral to membrane	receptor activity			ovary(1)|skin(1)	2	all_hematologic(175;0.215)	Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|Breast(109;0.171)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.5e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0301)		GAAGAGAGTCCCCTGCGGCTG	0.632													4	34					0	0	0.009096	0	0
HEPN1	641654	broad.mit.edu	37	11	124789832	124789832	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:124789832C>T	uc001qbj.1	+	1	687	c.186C>T	c.(184-186)TCC>TCT	p.S62S	HEPACAM_uc009zbj.2_3'UTR|HEPACAM_uc001qbk.2_3'UTR	NM_001037558	NP_001032647	Q6WQI6	HEPN1_HUMAN	HEPACAM opposite strand 1	62						cytoplasm					0	all_hematologic(175;0.215)	Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|Breast(109;0.171)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0287)		ACTGCCACTCCTATGAACTGT	0.488													6	33					0	0	0.001984	0	0
SLC37A2	219855	broad.mit.edu	37	11	124951352	124951352	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:124951352C>T	uc001qbn.2	+	8	981	c.730C>T	c.(730-732)CAC>TAC	p.H244Y	SLC37A2_uc010sau.1_Missense_Mutation_p.H244Y|SLC37A2_uc010sav.1_5'Flank|SLC37A2_uc001qbp.2_5'Flank	NM_001145290	NP_001138762	Q8TED4	SPX2_HUMAN	solute carrier family 37 (glycerol-3-phosphate	244					carbohydrate transport|transmembrane transport	integral to membrane				ovary(2)	2	all_hematologic(175;0.215)	Breast(109;0.012)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.152)|all_lung(97;0.159)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.61e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0384)		TCCTCAGCACCACGTGAGTGT	0.602													20	16					0	0	0.002780	0	0
KCNJ1	3758	broad.mit.edu	37	11	128709249	128709249	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:128709249G>A	uc001qeo.1	-	2	998	c.947C>T	c.(946-948)CCA>CTA	p.P316L	KCNJ1_uc001qep.1_Missense_Mutation_p.P297L|KCNJ1_uc001qeq.1_Missense_Mutation_p.P297L|KCNJ1_uc001qer.1_Missense_Mutation_p.P297L|KCNJ1_uc001qes.1_Missense_Mutation_p.P297L	NM_000220	NP_000211	P48048	IRK1_HUMAN	potassium inwardly-rectifying channel J1 isoform	316	Cytoplasmic (By similarity).				excretion	voltage-gated potassium channel complex	ATP binding|inward rectifier potassium channel activity			ovary(3)|breast(1)	4	all_hematologic(175;0.0641)	all_lung(97;4.89e-06)|Lung NSC(97;9.34e-06)|Breast(109;0.00123)|all_hematologic(192;0.00793)|Renal(330;0.0112)|all_neural(223;0.0189)|Medulloblastoma(222;0.0425)		OV - Ovarian serous cystadenocarcinoma(99;4.05e-06)|LUSC - Lung squamous cell carcinoma(976;0.008)|Lung(977;0.00942)	Acetohexamide(DB00414)|Chlorpropamide(DB00672)|Glibenclamide(DB01016)|Gliclazide(DB01120)|Glimepiride(DB00222)|Glipizide(DB01067)|Glycodiazine(DB01382)|Minoxidil(DB00350)|Nateglinide(DB00731)|Repaglinide(DB00912)|Tolazamide(DB00839)|Tolbutamide(DB01124)	CACCTCCTCTGGGACATAGGA	0.498													11	11					0	0	0.008291	0	0
C11orf45	219833	broad.mit.edu	37	11	128774390	128774390	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:128774390G>A	uc001qeu.2	-	2	266	c.72C>T	c.(70-72)ATC>ATT	p.I24I	KCNJ5_uc001qet.2_Intron|KCNJ5_uc009zck.2_Intron|C11orf45_uc009zcl.2_Silent_p.I24I|C11orf45_uc001qev.2_Silent_p.I24I	NM_145013	NP_659450	Q8TAV5	CK045_HUMAN	hypothetical protein LOC219833 precursor	24						extracellular region					0	all_hematologic(175;0.0641)	Lung NSC(97;0.00521)|Breast(109;0.00715)|all_lung(97;0.0111)|Medulloblastoma(222;0.0523)|all_neural(223;0.186)		OV - Ovarian serous cystadenocarcinoma(99;0.00531)|LUSC - Lung squamous cell carcinoma(976;0.0193)|Lung(977;0.0195)		gctcccagctgatggcagcgt	0.144													7	65					0	0	0.003080	0	0
ST14	6768	broad.mit.edu	37	11	130066489	130066489	+	Silent	SNP	C	T	T	rs138855512		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:130066489C>T	uc001qfw.2	+	11	1441	c.1248C>T	c.(1246-1248)TTC>TTT	p.F416F	ST14_uc010sca.1_Silent_p.F226F	NM_021978	NP_068813	Q9Y5Y6	ST14_HUMAN	matriptase	416	CUB 2.|Extracellular (Potential).				proteolysis	integral to plasma membrane	serine-type endopeptidase activity			ovary(2)|skin(2)|central_nervous_system(1)	5	all_hematologic(175;0.0429)	Lung NSC(97;0.000602)|Breast(109;0.000962)|all_lung(97;0.00126)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0183)|Lung(977;0.228)	Urokinase(DB00013)	GGTCCCAGTTCGTCGTCACCA	0.617													17	17					0	0	0.006122	0	0
ADAMTS8	11095	broad.mit.edu	37	11	130286860	130286860	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:130286860C>T	uc001qgg.3	-	3	1429	c.1071G>A	c.(1069-1071)GCG>GCA	p.A357A		NM_007037	NP_008968	Q9UP79	ATS8_HUMAN	ADAM metallopeptidase with thrombospondin type 1	357	Peptidase M12B.				negative regulation of cell proliferation|proteolysis	proteinaceous extracellular matrix	heparin binding|integrin binding|low affinity phosphate transmembrane transporter activity|metalloendopeptidase activity|zinc ion binding			central_nervous_system(1)	1	all_hematologic(175;0.0429)	Lung NSC(97;0.000601)|Breast(109;0.000962)|all_lung(97;0.00125)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.039)|Lung(977;0.213)		GGGTGTGGGCCGCCTGGAGCC	0.582													8	115					0	0	0.006214	0	0
ADAMTS8	11095	broad.mit.edu	37	11	130288974	130288974	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:130288974C>T	uc001qgg.3	-	2	1292	c.934G>A	c.(934-936)GAC>AAC	p.D312N		NM_007037	NP_008968	Q9UP79	ATS8_HUMAN	ADAM metallopeptidase with thrombospondin type 1	312	Peptidase M12B.				negative regulation of cell proliferation|proteolysis	proteinaceous extracellular matrix	heparin binding|integrin binding|low affinity phosphate transmembrane transporter activity|metalloendopeptidase activity|zinc ion binding			central_nervous_system(1)	1	all_hematologic(175;0.0429)	Lung NSC(97;0.000601)|Breast(109;0.000962)|all_lung(97;0.00125)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.039)|Lung(977;0.213)		ATGGCCGTGTCGTAGTGCTCT	0.642													8	85					0	0	0.006214	0	0
GLB1L3	112937	broad.mit.edu	37	11	134183908	134183908	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:134183908G>A	uc009zdf.2	+	17	2013	c.1653G>A	c.(1651-1653)ATG>ATA	p.M551I	GLB1L3_uc001qho.3_RNA	NM_001080407	NP_001073876	Q8NCI6	GLBL3_HUMAN	galactosidase, beta 1 like 3	551					carbohydrate metabolic process		cation binding|hydrolase activity, hydrolyzing O-glycosyl compounds			pancreas(1)	1	all_hematologic(175;0.127)	all_cancers(12;5.52e-23)|all_epithelial(12;2.15e-16)|all_lung(97;1.19e-05)|Lung NSC(97;2.76e-05)|Breast(109;0.000162)|all_neural(223;0.0182)|Medulloblastoma(222;0.0208)|Esophageal squamous(93;0.0559)		Epithelial(10;1.3e-11)|all cancers(11;2.07e-10)|BRCA - Breast invasive adenocarcinoma(10;3.09e-10)|OV - Ovarian serous cystadenocarcinoma(99;0.000873)|Lung(977;0.222)		AGATGAAAATGAGCTTCTTTG	0.478													8	9					0	0	0.003080	0	0
GLB1L2	89944	broad.mit.edu	37	11	134214955	134214955	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:134214955C>T	uc001qhp.2	+	4	569	c.381C>T	c.(379-381)ATC>ATT	p.I127I	GLB1L2_uc009zdg.1_5'Flank	NM_138342	NP_612351	Q8IW92	GLBL2_HUMAN	galactosidase, beta 1-like 2 precursor	127					carbohydrate metabolic process	extracellular region	cation binding|hydrolase activity, hydrolyzing O-glycosyl compounds			ovary(1)|pancreas(1)|skin(1)	3	all_hematologic(175;0.127)	all_cancers(12;2.85e-18)|all_epithelial(12;1.21e-12)|all_lung(97;0.000276)|Lung NSC(97;0.000518)|Breast(109;0.00122)|Medulloblastoma(222;0.0399)|all_neural(223;0.0412)|Esophageal squamous(93;0.0844)		Epithelial(10;1.37e-11)|all cancers(11;2.2e-10)|BRCA - Breast invasive adenocarcinoma(10;3.09e-10)|OV - Ovarian serous cystadenocarcinoma(99;0.000885)|Lung(977;0.223)		CCGCAGAGATCGGGCTGTGGG	0.662													7	25					0	0	0.003080	0	0
GLB1L2	89944	broad.mit.edu	37	11	134226237	134226237	+	Missense_Mutation	SNP	G	A	A	rs146193618		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:134226237G>A	uc001qhp.2	+	6	789	c.601G>A	c.(601-603)GAA>AAA	p.E201K	GLB1L2_uc009zdg.1_RNA	NM_138342	NP_612351	Q8IW92	GLBL2_HUMAN	galactosidase, beta 1-like 2 precursor	201		Proton donor (By similarity).			carbohydrate metabolic process	extracellular region	cation binding|hydrolase activity, hydrolyzing O-glycosyl compounds			ovary(1)|pancreas(1)|skin(1)	3	all_hematologic(175;0.127)	all_cancers(12;2.85e-18)|all_epithelial(12;1.21e-12)|all_lung(97;0.000276)|Lung NSC(97;0.000518)|Breast(109;0.00122)|Medulloblastoma(222;0.0399)|all_neural(223;0.0412)|Esophageal squamous(93;0.0844)		Epithelial(10;1.37e-11)|all cancers(11;2.2e-10)|BRCA - Breast invasive adenocarcinoma(10;3.09e-10)|OV - Ovarian serous cystadenocarcinoma(99;0.000885)|Lung(977;0.223)		GGTGGAGAATGAATATGGTTC	0.478													43	72					0	0	0.014410	0	0
GLB1L2	89944	broad.mit.edu	37	11	134240216	134240216	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:134240216C>T	uc001qhp.2	+	12	1326	c.1138C>T	c.(1138-1140)CTT>TTT	p.L380F	GLB1L2_uc009zdg.1_RNA	NM_138342	NP_612351	Q8IW92	GLBL2_HUMAN	galactosidase, beta 1-like 2 precursor	380					carbohydrate metabolic process	extracellular region	cation binding|hydrolase activity, hydrolyzing O-glycosyl compounds			ovary(1)|pancreas(1)|skin(1)	3	all_hematologic(175;0.127)	all_cancers(12;2.85e-18)|all_epithelial(12;1.21e-12)|all_lung(97;0.000276)|Lung NSC(97;0.000518)|Breast(109;0.00122)|Medulloblastoma(222;0.0399)|all_neural(223;0.0412)|Esophageal squamous(93;0.0844)		Epithelial(10;1.37e-11)|all cancers(11;2.2e-10)|BRCA - Breast invasive adenocarcinoma(10;3.09e-10)|OV - Ovarian serous cystadenocarcinoma(99;0.000885)|Lung(977;0.223)		ACCTGACCTTCTTCCCAAGAT	0.607													5	85					0	0	0.004482	0	0
B3GAT1	27087	broad.mit.edu	37	11	134252840	134252840	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr11:134252840C>T	uc001qhq.2	-	5	943	c.682G>A	c.(682-684)GAG>AAG	p.E228K	B3GAT1_uc001qhr.2_Missense_Mutation_p.E228K|B3GAT1_uc010scv.1_Missense_Mutation_p.E241K	NM_018644	NP_061114	Q9P2W7	B3GA1_HUMAN	beta-1,3-glucuronyltransferase 1	228	Lumenal (Potential).				carbohydrate metabolic process	Golgi membrane|integral to membrane	galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity|metal ion binding			ovary(1)	1	all_hematologic(175;0.127)	all_cancers(12;1.39e-23)|all_epithelial(12;7.17e-17)|all_lung(97;1.19e-05)|Lung NSC(97;2.76e-05)|Breast(109;0.000162)|Medulloblastoma(222;0.0125)|all_neural(223;0.0137)|Esophageal squamous(93;0.0559)		Epithelial(10;2.58e-11)|all cancers(11;5.75e-10)|BRCA - Breast invasive adenocarcinoma(10;9.69e-09)|OV - Ovarian serous cystadenocarcinoma(99;0.000879)|Lung(977;0.0864)		CGTGGGGCCTCGTACCGCAGG	0.657													3	5					0	0	0.004672	0	0
SLC6A13	6540	broad.mit.edu	37	12	352957	352957	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:352957G>A	uc001qic.1	-	3	278	c.225C>T	c.(223-225)CTC>CTT	p.L75L	SLC6A13_uc009zdj.1_Silent_p.L75L|SLC6A13_uc010sdl.1_Intron|SLC6A13_uc010sdm.1_5'Flank	NM_016615	NP_057699	Q9NSD5	S6A13_HUMAN	solute carrier family 6 (neurotransmitter	75	Helical; Name=2; (Potential).				neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity				0	all_cancers(10;0.0416)|all_epithelial(11;0.0537)|all_lung(10;0.0989)|Lung NSC(10;0.139)|Ovarian(42;0.142)		OV - Ovarian serous cystadenocarcinoma(31;0.00153)|BRCA - Breast invasive adenocarcinoma(9;0.239)			AGAGGAAGACGAGGTAGGGGA	0.527													16	16					0	0	0.004990	0	0
ADIPOR2	79602	broad.mit.edu	37	12	1893198	1893198	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:1893198C>T	uc001qjm.2	+	7	1188	c.991C>T	c.(991-993)CGG>TGG	p.R331W	ADIPOR2_uc001qjn.2_Missense_Mutation_p.R331W	NM_024551	NP_078827	Q86V24	ADR2_HUMAN	adiponectin receptor 2	331	Cytoplasmic (Potential).				fatty acid oxidation|hormone-mediated signaling pathway	integral to membrane	hormone binding|receptor activity				0	Ovarian(42;0.107)		OV - Ovarian serous cystadenocarcinoma(31;0.000382)			GTATGCTGCCCGGATCCCCGA	0.542													32	20					0	0	0.013726	0	0
FGF6	2251	broad.mit.edu	37	12	4554479	4554479	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:4554479C>T	uc001qmr.1	-	1	302	c.258G>A	c.(256-258)CGG>CGA	p.R86R		NM_020996	NP_066276	P10767	FGF6_HUMAN	fibroblast growth factor 6 precursor	86					angiogenesis|cell proliferation|cell-cell signaling|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|positive regulation of cell division|positive regulation of cell proliferation	extracellular space	growth factor activity			lung(2)|ovary(1)	3			Colorectal(7;0.00165)|COAD - Colon adenocarcinoma(12;0.0229)			AGTAGAGCCTCCGCTGCCGCT	0.652													20	16					0	0	0.008871	0	0
ANO2	57101	broad.mit.edu	37	12	5722088	5722088	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:5722088G>A	uc001qnm.2	-	19	2037	c.1965C>T	c.(1963-1965)TTC>TTT	p.F655F		NM_020373	NP_065106	Q9NQ90	ANO2_HUMAN	anoctamin 2	660	Extracellular (Potential).					chloride channel complex|plasma membrane	intracellular calcium activated chloride channel activity			ovary(4)|large_intestine(2)|central_nervous_system(1)	7						GGTAACCATCGAATACATAGA	0.517													30	20					0	0	0.003271	0	0
ANO2	57101	broad.mit.edu	37	12	5963220	5963220	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:5963220G>A	uc001qnm.2	-	4	682	c.610C>T	c.(610-612)CCT>TCT	p.P204S		NM_020373	NP_065106	Q9NQ90	ANO2_HUMAN	anoctamin 2	208	Cytoplasmic (Potential).					chloride channel complex|plasma membrane	intracellular calcium activated chloride channel activity			ovary(4)|large_intestine(2)|central_nervous_system(1)	7						TTCTTGGTAGGAACTTTGATC	0.507													83	68					0	0	0.014410	0	0
VWF	7450	broad.mit.edu	37	12	6094217	6094217	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:6094217C>T	uc001qnn.1	-	40	7220	c.6970G>A	c.(6970-6972)GAG>AAG	p.E2324K	VWF_uc010set.1_Intron	NM_000552	NP_000543	P04275	VWF_HUMAN	von Willebrand factor preproprotein	2324	VWFC 1.				blood coagulation, intrinsic pathway|cell-substrate adhesion|platelet activation|platelet degranulation|protein homooligomerization	endoplasmic reticulum|platelet alpha granule lumen|proteinaceous extracellular matrix|Weibel-Palade body	chaperone binding|collagen binding|glycoprotein binding|immunoglobulin binding|integrin binding|protease binding|protein homodimerization activity|protein N-terminus binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)	12					Antihemophilic Factor(DB00025)	ATACCACACTCATACTCGGGG	0.607													35	27					0	0	0.006230	0	0
ACRBP	84519	broad.mit.edu	37	12	6749294	6749294	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:6749294C>T	uc001qpu.1	-	8	1405	c.1357G>A	c.(1357-1359)GAT>AAT	p.D453N	LPAR5_uc010sff.1_5'Flank|ACRBP_uc001qpt.1_5'Flank|ACRBP_uc010sfg.1_Missense_Mutation_p.D420N	NM_032489	NP_115878	Q8NEB7	ACRBP_HUMAN	proacrosin binding protein sp32 precursor	453						acrosomal vesicle|extracellular region				central_nervous_system(1)	1						ACTCGGACATCTTCACAGCCT	0.567													20	17					0	0	0.014323	0	0
C12orf53	196500	broad.mit.edu	37	12	6804782	6804782	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:6804782C>T	uc001qqf.1	-	5	717	c.641G>A	c.(640-642)GGG>GAG	p.G214E	C12orf53_uc001qqg.1_Missense_Mutation_p.G214E	NM_153685	NP_710152	Q8IYJ0	CL053_HUMAN	hypothetical protein LOC196500 precursor	214	Cytoplasmic (Potential).					integral to membrane					0						ACCTTGCTGCCCTGAGGGTCT	0.647													55	46					0	0	0.014410	0	0
C12orf53	196500	broad.mit.edu	37	12	6806555	6806555	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:6806555G>A	uc001qqf.1	-	3	497	c.421C>T	c.(421-423)CCA>TCA	p.P141S	C12orf53_uc001qqg.1_Missense_Mutation_p.P141S	NM_153685	NP_710152	Q8IYJ0	CL053_HUMAN	hypothetical protein LOC196500 precursor	141	Extracellular (Potential).					integral to membrane					0						TTGGGGTGTGGGGTTGCGAGC	0.622													6	40					0	0	0.003080	0	0
C1S	716	broad.mit.edu	37	12	7170352	7170352	+	Silent	SNP	T	A	A	rs150797595		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:7170352T>A	uc001qsj.2	+	7	1091	c.372T>A	c.(370-372)GCT>GCA	p.A124A	C1S_uc001qsk.2_Silent_p.A124A|C1S_uc001qsl.2_Silent_p.A124A|C1S_uc009zfr.2_5'UTR|C1S_uc009zfs.2_RNA	NM_201442	NP_958850	P09871	C1S_HUMAN	complement component 1, s subcomponent	124	CUB 1.				complement activation, classical pathway|innate immune response|proteolysis	extracellular region	calcium ion binding|serine-type endopeptidase activity			skin(1)	1					Abciximab(DB00054)|Adalimumab(DB00051)|Basiliximab(DB00074)|Cetuximab(DB00002)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Rituximab(DB00073)|Trastuzumab(DB00072)	CGGGGTTTGCTGCATACTATG	0.438													19	76					0	0	0.014323	0	0
C1RL	51279	broad.mit.edu	37	12	7252533	7252533	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:7252533G>A	uc001qsn.2	-	4	597	c.580C>T	c.(580-582)CAC>TAC	p.H194Y	C1RL_uc009zft.2_Missense_Mutation_p.H194Y	NM_016546	NP_057630	Q9NZP8	C1RL_HUMAN	complement component 1, r subcomponent-like	194					complement activation, classical pathway|innate immune response|proteolysis		serine-type endopeptidase activity			pancreas(1)	1						TCCTGGCAGTGGTTCTGGACC	0.597													27	16					0	0	0.009535	0	0
PEX5	5830	broad.mit.edu	37	12	7354848	7354848	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:7354848C>T	uc009zfu.1	+	9	1234	c.654C>T	c.(652-654)TTC>TTT	p.F218F	PEX5_uc001qsw.2_Silent_p.F218F|PEX5_uc010sgc.1_Silent_p.F233F|PEX5_uc001qsu.2_Intron|PEX5_uc010sgd.1_Silent_p.F239F|PEX5_uc001qsv.2_Silent_p.F218F	NM_001131026	NP_001124498	P50542	PEX5_HUMAN	peroxisomal biogenesis factor 5 isoform d	218					protein import into peroxisome matrix, translocation|protein targeting to peroxisome|protein tetramerization|protein transport	cytosol|peroxisomal matrix|peroxisomal membrane	peroxisome matrix targeting signal-1 binding|protein C-terminus binding|protein N-terminus binding			ovary(1)	1						TCCTGAAATTCGTGCGGCAGA	0.597													36	20					0	0	0.004289	0	0
CD163L1	283316	broad.mit.edu	37	12	7559320	7559320	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:7559320C>T	uc001qsy.2	-	5	921	c.895G>A	c.(895-897)GTA>ATA	p.V299I	CD163L1_uc010sge.1_Missense_Mutation_p.V309I	NM_174941	NP_777601	Q9NR16	C163B_HUMAN	scavenger receptor cysteine-rich type 1	299	SRCR 3.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	scavenger receptor activity			ovary(8)|skin(2)|central_nervous_system(1)	11						TGCTTGCATACGACATCAGCT	0.522													45	21					0	0	0.008740	0	0
CD163L1	283316	broad.mit.edu	37	12	7585176	7585176	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:7585176G>A	uc001qsy.2	-	4	628	c.602C>T	c.(601-603)TCT>TTT	p.S201F	CD163L1_uc010sge.1_Missense_Mutation_p.S211F	NM_174941	NP_777601	Q9NR16	C163B_HUMAN	scavenger receptor cysteine-rich type 1	201	SRCR 2.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	scavenger receptor activity			ovary(8)|skin(2)|central_nervous_system(1)	11						AGAAATAAAAGAAGATGGACA	0.468													24	14					0	0	0.002780	0	0
CD163	9332	broad.mit.edu	37	12	7632515	7632515	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:7632515C>T	uc001qsz.3	-	16	3549	c.3421G>A	c.(3421-3423)GAA>AAA	p.E1141K	CD163_uc001qta.3_Intron|CD163_uc009zfw.2_Intron	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	1141	Cytoplasmic (Potential).				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						GCCTCCTTTTCCATTCCAGAA	0.368													17	16					0	0	0.004990	0	0
FOXJ2	55810	broad.mit.edu	37	12	8196551	8196551	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:8196551C>T	uc001qtu.2	+	5	1567	c.482C>T	c.(481-483)TCC>TTC	p.S161F	FOXJ2_uc001qtt.1_Missense_Mutation_p.S161F	NM_018416	NP_060886	Q9P0K8	FOXJ2_HUMAN	forkhead box J2	161					embryo development|organ development|pattern specification process|positive regulation of transcription, DNA-dependent|regulation of sequence-specific DNA binding transcription factor activity|tissue development	nucleolus|transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|protein domain specific binding|sequence-specific DNA binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription factor binding			upper_aerodigestive_tract(2)|ovary(2)|skin(1)	5				Kidney(36;0.0944)		CCTCAGCTGTCCCAAGACTCA	0.542													44	15					0	0	0.011902	0	0
FAM90A1	55138	broad.mit.edu	37	12	8375251	8375251	+	Nonsense_Mutation	SNP	T	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:8375251T>A	uc001qui.2	-	7	1121	c.562A>T	c.(562-564)AAA>TAA	p.K188*	FAM90A1_uc001quh.2_Nonsense_Mutation_p.K188*	NM_018088	NP_060558	Q86YD7	F90A1_HUMAN	hypothetical protein LOC55138	188							nucleic acid binding|zinc ion binding			ovary(1)	1				Kidney(36;0.0866)		AGACTGGCTTTTCTGAGGGGA	0.587													49	27					0	0	0.014410	0	0
AICDA	57379	broad.mit.edu	37	12	8757480	8757480	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:8757480C>T	uc001qur.2	-	4	545	c.466G>A	c.(466-468)GAA>AAA	p.E156K	AICDA_uc001qup.1_Missense_Mutation_p.E141K|AICDA_uc001quq.1_Intron|AICDA_uc009zgd.1_Intron	NM_020661	NP_065712	Q9GZX7	AICDA_HUMAN	activation-induced cytidine deaminase	156					B cell differentiation|DNA demethylation|mRNA processing|negative regulation of methylation-dependent chromatin silencing	cytoplasm	cytidine deaminase activity|protein binding|zinc ion binding			ovary(1)|pancreas(1)	2	Lung SC(5;0.184)					AAAGTTCTTTCGTGGTTTTCT	0.423									Immune_Deficiency_with_Hyper-IgM				44	33					0	0	0.014410	0	0
PZP	5858	broad.mit.edu	37	12	9303255	9303255	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:9303255C>T	uc001qvl.2	-	34	4398	c.4369G>A	c.(4369-4371)GAT>AAT	p.D1457N	PZP_uc009zgl.2_Missense_Mutation_p.D1243N	NM_002864	NP_002855			pregnancy-zone protein precursor											ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)	5						TCATAGTAATCATAGACTTTA	0.403													20	20					0	0	0.012319	0	0
LOC642846	642846	broad.mit.edu	37	12	9455282	9455282	+	RNA	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:9455282C>T	uc010sgp.1	+	12		c.1592C>T			LOC642846_uc001qvp.2_RNA	NR_024374				Homo sapiens cDNA FLJ60280 complete cds, highly similar to Probable ATP-dependent RNA helicase DDX11 (EC 3.6.1.-).												0						TGGAGAAATTCGTGGCTGTGC	0.572													14	10					0	0	0.004990	0	0
CLEC1A	51267	broad.mit.edu	37	12	10251418	10251418	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:10251418G>A	uc001qxb.2	-	1	188	c.104C>T	c.(103-105)CCC>CTC	p.P35L	CLEC1A_uc009zhf.2_5'UTR|CLEC1A_uc001qxc.2_5'UTR|CLEC1A_uc001qxd.2_Missense_Mutation_p.P25L|CLEC1A_uc010sgx.1_Missense_Mutation_p.P25L	NM_016511	NP_057595	Q8NC01	CLC1A_HUMAN	C-type lectin-like receptor-1	35	Cytoplasmic (Potential).				cell surface receptor linked signaling pathway|defense response	integral to plasma membrane|intracellular	sugar binding|transmembrane receptor activity			ovary(1)|central_nervous_system(1)	2						TGTGCGCCGGGGCTCTGGATG	0.532													8	8					0	0	0.003080	0	0
STYK1	55359	broad.mit.edu	37	12	10783853	10783853	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:10783853C>T	uc001qys.2	-	5	763	c.242G>A	c.(241-243)GGA>GAA	p.G81E		NM_018423	NP_060893	Q6J9G0	STYK1_HUMAN	serine/threonine/tyrosine kinase 1	81						integral to membrane|plasma membrane	ATP binding|non-membrane spanning protein tyrosine kinase activity			central_nervous_system(3)|ovary(2)|lung(2)|breast(1)	8						AGCCACATTTCCTCCATGTCC	0.557										HNSCC(73;0.22)			39	27					0	0	0.006230	0	0
PRB1	5542	broad.mit.edu	37	12	11506862	11506862	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:11506862C>T	uc001qzw.1	-	3	212	c.175G>A	c.(175-177)GGA>AGA	p.G59R	PRB1_uc001qzu.1_Missense_Mutation_p.G59R|PRB1_uc001qzv.1_Missense_Mutation_p.G59R	NM_005039	NP_005030	P04280	PRP1_HUMAN	proline-rich protein BstNI subfamily 1 isoform 1	120	15 X 20 AA approximate tandem repeats of P-P-G-K-P-Q-G-P-P-[PAQ]-Q-[GE]-[GD]- [NKS]-[KSQRN]-[PRQS]-[QS] [GPS]-[PQAR]- [PSR].|4.		Missing (in clone CP-4).|Missing (in clone CP-5).|Missing (in allele M).			extracellular region					0			OV - Ovarian serous cystadenocarcinoma(49;0.185)			GGGGGTGGTCCTTGTGGCTTT	0.597													118	134					0	0	0.014410	0	0
LRP6	4040	broad.mit.edu	37	12	12279721	12279721	+	Missense_Mutation	SNP	C	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:12279721C>A	uc001rah.3	-	20	4358	c.4216G>T	c.(4216-4218)GGG>TGG	p.G1406W	BCL2L14_uc001raf.1_Intron|LRP6_uc010shl.1_Missense_Mutation_p.G1361W	NM_002336	NP_002327	O75581	LRP6_HUMAN	low density lipoprotein receptor-related protein	1406	Cytoplasmic (Potential).				cellular response to cholesterol|negative regulation of protein phosphorylation|negative regulation of protein serine/threonine kinase activity|negative regulation of smooth muscle cell apoptosis|neural crest formation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell cycle|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway involved in dorsal/ventral axis specification|Wnt receptor signaling pathway involved in dorsal/ventral axis specification	cell surface|cytoplasmic vesicle|endoplasmic reticulum|integral to membrane|plasma membrane	coreceptor activity|frizzled binding|kinase inhibitor activity|low-density lipoprotein receptor activity|protein homodimerization activity|toxin transporter activity|Wnt-protein binding			lung(4)|skin(4)|ovary(2)|kidney(1)|central_nervous_system(1)	12		Prostate(47;0.0865)				ATAGTTTCCCCATCTCCCTTC	0.438													231	146					1.65138e-85	1.78768e-85	0.014410	1	0
C12orf36	283422	broad.mit.edu	37	12	13529258	13529258	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:13529258C>T	uc001rbs.1	-	2	300	c.82G>A	c.(82-84)GAA>AAA	p.E28K		NM_182558	NP_872364			hypothetical protein LOC283422												0				BRCA - Breast invasive adenocarcinoma(232;0.198)		gaagtgtcttcatcaggaaca	0.06													7	11					0	0	0.001984	0	0
GRIN2B	2904	broad.mit.edu	37	12	13715851	13715851	+	Missense_Mutation	SNP	G	A	A	rs143379788		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:13715851G>A	uc001rbt.2	-	13	4500	c.4321C>T	c.(4321-4323)CGT>TGT	p.R1441C		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	1441	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	TTCTGGAAACGGGCTGGCACG	0.607													32	17					0	0	0.012213	0	0
PLBD1	79887	broad.mit.edu	37	12	14693812	14693812	+	Silent	SNP	T	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:14693812T>C	uc001rcc.1	-	4	605	c.444A>G	c.(442-444)AAA>AAG	p.K148K		NM_024829	NP_079105	Q6P4A8	PLBL1_HUMAN	phospholipase B domain containing 1	148					lipid catabolic process	extracellular region	hydrolase activity				0						CTTTGATATTTTTCCGGGTCC	0.398													64	33					0	0	0.014410	0	0
GUCY2C	2984	broad.mit.edu	37	12	14781642	14781642	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:14781642C>T	uc001rcd.2	-	20	2324	c.2187G>A	c.(2185-2187)GAG>GAA	p.E729E		NM_004963	NP_004954	P25092	GUC2C_HUMAN	guanylate cyclase 2C precursor	729	Cytoplasmic (Potential).|Protein kinase.				intracellular signal transduction|receptor guanylyl cyclase signaling pathway	integral to membrane	ATP binding|GTP binding|guanylate cyclase activity|protein binding|protein kinase activity|receptor activity			ovary(4)|skin(2)	6						CTGGATCTTCCTCCCAACAGT	0.343													31	24					0	0	0.003755	0	0
RERG	85004	broad.mit.edu	37	12	15262321	15262321	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:15262321G>A	uc001rcs.2	-	4	463	c.323C>T	c.(322-324)CCC>CTC	p.P108L	RERG_uc001rct.2_Missense_Mutation_p.P108L|RERG_uc010shu.1_Missense_Mutation_p.P89L	NM_032918	NP_116307	Q96A58	RERG_HUMAN	RAS-like, estrogen-regulated, growth inhibitor	108					negative regulation of cell growth|negative regulation of cell proliferation|response to hormone stimulus|small GTPase mediated signal transduction	cytosol|membrane|nucleus	estrogen receptor binding|GDP binding|GTP binding|GTPase activity			lung(1)	1						CACATTCTTGGGCTTTTTGAT	0.488													29	183					0	0	0.005443	0	0
PIK3C2G	5288	broad.mit.edu	37	12	18691095	18691095	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:18691095G>A	uc001rdt.2	+	24	3322	c.3206G>A	c.(3205-3207)CGA>CAA	p.R1069Q	PIK3C2G_uc010sia.1_RNA|PIK3C2G_uc010sib.1_Missense_Mutation_p.R1110Q|PIK3C2G_uc010sic.1_Missense_Mutation_p.R888Q	NM_004570	NP_004561	O75747	P3C2G_HUMAN	phosphoinositide-3-kinase, class 2 gamma	1069	PI3K/PI4K.				cell communication|phosphatidylinositol-mediated signaling	membrane|phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity			lung(8)|central_nervous_system(6)|breast(3)|stomach(2)|ovary(2)	21		Hepatocellular(102;0.194)				TACAGGGACCGAGCTCCTTTC	0.368													25	12					0	0	0.006320	0	0
PLCZ1	89869	broad.mit.edu	37	12	18836234	18836234	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:18836234G>A	uc010sid.1	-	15	1957	c.1766C>T	c.(1765-1767)TCC>TTC	p.S589F	PLCZ1_uc001rdv.3_Missense_Mutation_p.S485F|PLCZ1_uc001rdw.3_Missense_Mutation_p.S330F|PLCZ1_uc001rdu.1_Missense_Mutation_p.S371F|PLCZ1_uc009zil.1_RNA	NM_033123	NP_149114	Q86YW0	PLCZ1_HUMAN	phospholipase C, zeta 1	589					intracellular signal transduction|lipid catabolic process|multicellular organismal development	nucleus|perinuclear region of cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(1)|lung(1)|skin(1)	3	Acute lymphoblastic leukemia(4;0.000455)|all_hematologic(4;0.0241)					ACCCATTCTGGAAAACAGAGG	0.388													47	20					0	0	0.014410	0	0
PLCZ1	89869	broad.mit.edu	37	12	18854641	18854641	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:18854641C>T	uc010sid.1	-	8	1125	c.934G>A	c.(934-936)GGT>AGT	p.G312S	PLCZ1_uc001rdv.3_Missense_Mutation_p.G208S|PLCZ1_uc001rdw.3_Missense_Mutation_p.G53S|PLCZ1_uc001rdu.1_Missense_Mutation_p.G53S|PLCZ1_uc009zil.1_RNA	NM_033123	NP_149114	Q86YW0	PLCZ1_HUMAN	phospholipase C, zeta 1	312					intracellular signal transduction|lipid catabolic process|multicellular organismal development	nucleus|perinuclear region of cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(1)|lung(1)|skin(1)	3	Acute lymphoblastic leukemia(4;0.000455)|all_hematologic(4;0.0241)					TTATCAGAACCTTTTCTTTCA	0.264													6	6					0	0	0.003080	0	0
SLCO1B3	28234	broad.mit.edu	37	12	21242995	21242995	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:21242995C>T	uc010sil.1	+	16	2267	c.2202C>T	c.(2200-2202)TTC>TTT	p.F734F	LST-3TM12_uc010sim.1_Silent_p.F673F|LST-3TM12_uc010sin.1_Silent_p.F626F			Q9NPD5	SO1B3_HUMAN	SubName: Full=Liver-specific organic anion transporter 3TM13; SubName: Full=Organic anion transporter LST-3c;	673	Cytoplasmic (Potential).				bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|cytoplasm|integral to plasma membrane	bile acid transmembrane transporter activity|organic anion transmembrane transporter activity			large_intestine(2)|ovary(1)|skin(1)	4	Esophageal squamous(101;0.149)					ACTTAGAATTCTTAAACGACA	0.308													12	9					0	0	0.010729	0	0
SLCO1B1	10599	broad.mit.edu	37	12	21331569	21331569	+	Missense_Mutation	SNP	C	T	T	rs138965366		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:21331569C>T	uc001req.3	+	6	645	c.541C>T	c.(541-543)CGT>TGT	p.R181C		NM_006446	NP_006437	Q9Y6L6	SO1B1_HUMAN	solute carrier organic anion transporter family,	181	Helical; Name=4; (Potential).				bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|integral to plasma membrane|membrane fraction	bile acid transmembrane transporter activity|sodium-independent organic anion transmembrane transporter activity|thyroid hormone transmembrane transporter activity			ovary(3)|skin(3)|pancreas(1)|central_nervous_system(1)	8					Digoxin(DB00390)|Gemfibrozil(DB01241)|Pravastatin(DB00175)	TAATATGCTTCGTGGAATAGG	0.348													21	42					0	0	0.002780	0	0
SLCO1A2	6579	broad.mit.edu	37	12	21422553	21422553	+	Missense_Mutation	SNP	C	T	T	rs150224028	byFrequency	TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:21422553C>T	uc001rer.2	-	14	2193	c.1942G>A	c.(1942-1944)GAA>AAA	p.E648K	SLCO1A2_uc001res.2_Missense_Mutation_p.E648K|SLCO1A2_uc010siq.1_Missense_Mutation_p.E516K|SLCO1A2_uc010sio.1_Missense_Mutation_p.E516K|SLCO1A2_uc010sip.1_Missense_Mutation_p.E516K	NM_021094	NP_066580	P46721	SO1A2_HUMAN	organic anion transporting polypeptide A	648	Cytoplasmic (Potential).				bile acid metabolic process|sodium-independent organic anion transport	integral to membrane|plasma membrane	bile acid transmembrane transporter activity|organic anion transmembrane transporter activity			large_intestine(1)|pancreas(1)|ovary(1)|skin(1)	4						CACTCATTTTCCTTCCCTTTG	0.333													28	42					0	0	0.007291	0	0
SLCO1A2	6579	broad.mit.edu	37	12	21457408	21457408	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:21457408G>A	uc001rer.2	-	5	793	c.542C>T	c.(541-543)TCC>TTC	p.S181F	SLCO1A2_uc001res.2_Missense_Mutation_p.S181F|SLCO1A2_uc010siq.1_Missense_Mutation_p.S49F|SLCO1A2_uc010sio.1_Missense_Mutation_p.S49F|SLCO1A2_uc010sip.1_Missense_Mutation_p.S49F|SLCO1A2_uc001ret.2_Missense_Mutation_p.S179F|SLCO1A2_uc001reu.2_Missense_Mutation_p.S161F	NM_021094	NP_066580	P46721	SO1A2_HUMAN	organic anion transporting polypeptide A	181	Helical; Name=4; (Potential).				bile acid metabolic process|sodium-independent organic anion transport	integral to membrane|plasma membrane	bile acid transmembrane transporter activity|organic anion transmembrane transporter activity			large_intestine(1)|pancreas(1)|ovary(1)|skin(1)	4						TTCTATATAGGAAATACCCAA	0.343													28	14					0	0	0.005443	0	0
ABCC9	10060	broad.mit.edu	37	12	21970222	21970222	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:21970222C>T	uc001rfi.1	-	31	3811	c.3791G>A	c.(3790-3792)TGG>TAG	p.W1264*	ABCC9_uc001rfh.2_Nonsense_Mutation_p.W1264*|ABCC9_uc001rfj.1_Nonsense_Mutation_p.W1228*	NM_005691	NP_005682	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9	1264	Helical; Name=15; (Potential).|ABC transmembrane type-1 2.				defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity			ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	CCTCACAACCCAATTCAAATA	0.383													56	33					0	0	0.014410	0	0
ABCC9	10060	broad.mit.edu	37	12	22005137	22005137	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:22005137C>T	uc001rfi.1	-	22	2683	c.2663G>A	c.(2662-2664)GGA>GAA	p.G888E	ABCC9_uc001rfh.2_Missense_Mutation_p.G888E|ABCC9_uc001rfj.1_Missense_Mutation_p.G852E	NM_005691	NP_005682	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9	888	Cytoplasmic (Potential).|ABC transporter 1.				defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity			ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	TAGGACACTTCCATCTTTCAT	0.368													14	3					0	0	0.003163	0	0
BCAT1	586	broad.mit.edu	37	12	25002804	25002804	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:25002804C>T	uc001rgd.3	-	6	1032	c.590G>A	c.(589-591)GGA>GAA	p.G197E	BCAT1_uc001rgc.2_Missense_Mutation_p.G196E|BCAT1_uc010six.1_Missense_Mutation_p.G209E|BCAT1_uc010siy.1_Missense_Mutation_p.G160E|BCAT1_uc001rge.3_Missense_Mutation_p.G136E	NM_005504	NP_005495	P54687	BCAT1_HUMAN	branched chain aminotransferase 1, cytosolic	197					branched chain family amino acid biosynthetic process|branched chain family amino acid catabolic process|cell proliferation|G1/S transition of mitotic cell cycle	cytosol	L-isoleucine transaminase activity|L-leucine transaminase activity|L-valine transaminase activity			lung(1)|breast(1)	2	Acute lymphoblastic leukemia(6;0.00112)|all_hematologic(7;0.00152)|Ovarian(17;0.107)|Colorectal(261;0.196)				Gabapentin(DB00996)|L-Glutamic Acid(DB00142)|L-Isoleucine(DB00167)|L-Leucine(DB00149)|L-Valine(DB00161)|Pyridoxal Phosphate(DB00114)	ATTAAAGGTTCCACTTGAAAA	0.478													53	37					0	0	0.014410	0	0
CASC1	55259	broad.mit.edu	37	12	25297531	25297531	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:25297531C>T	uc001rgl.2	-	8	834	c.752G>A	c.(751-753)CGA>CAA	p.R251Q	CASC1_uc001rgk.2_Missense_Mutation_p.R257Q|CASC1_uc001rgm.3_Missense_Mutation_p.R315Q|CASC1_uc001rgj.2_Missense_Mutation_p.R211Q|CASC1_uc010sje.1_Missense_Mutation_p.R192Q|CASC1_uc010sjf.1_Missense_Mutation_p.R139Q|CASC1_uc010sjg.1_Missense_Mutation_p.R251Q	NM_001082973	NP_001076442	Q6TDU7	CASC1_HUMAN	cancer susceptibility candidate 1 isoform b	251										ovary(2)	2	Acute lymphoblastic leukemia(6;0.00112)|all_hematologic(7;0.00152)|Melanoma(3;0.0301)|Colorectal(261;0.11)		OV - Ovarian serous cystadenocarcinoma(3;7.42e-20)|Epithelial(3;7.58e-16)|all cancers(3;1.07e-13)			ATGCAGGAGTCGTACAGCAAT	0.378													256	10					0	0	0.014410	0	0
CASC1	55259	broad.mit.edu	37	12	25314098	25314098	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:25314098C>T	uc001rgl.2	-	2	119	c.37G>A	c.(37-39)GAA>AAA	p.E13K	CASC1_uc001rgk.2_Missense_Mutation_p.E19K|CASC1_uc001rgm.3_Missense_Mutation_p.E77K|CASC1_uc001rgj.2_5'UTR|CASC1_uc010sje.1_Intron|CASC1_uc010sjf.1_5'UTR|CASC1_uc010sjg.1_Missense_Mutation_p.E13K|CASC1_uc010sjh.1_RNA	NM_001082973	NP_001076442	Q6TDU7	CASC1_HUMAN	cancer susceptibility candidate 1 isoform b	13										ovary(2)	2	Acute lymphoblastic leukemia(6;0.00112)|all_hematologic(7;0.00152)|Melanoma(3;0.0301)|Colorectal(261;0.11)		OV - Ovarian serous cystadenocarcinoma(3;7.42e-20)|Epithelial(3;7.58e-16)|all cancers(3;1.07e-13)			TTCAATCGTTCAGCTTTGGTG	0.368													730	90					0	0	0.014410	0	0
Unknown	0	broad.mit.edu	37	12	31279374	31279374	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:31279374G>A	uc010sjy.1	-	26	3379	c.3379C>T	c.(3379-3381)CAT>TAT	p.H1127Y						RecName: Full=Ovostatin homolog 1; Flags: Precursor;																		AGAATTGCATGATTGTAGCCA	0.428													32	22					0	0	0.008361	0	0
PKP2	5318	broad.mit.edu	37	12	32993999	32993999	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:32993999C>T	uc001rlj.3	-	7	1766	c.1651G>A	c.(1651-1653)GAT>AAT	p.D551N	PKP2_uc001rlk.3_Missense_Mutation_p.D507N|PKP2_uc010skj.1_Missense_Mutation_p.D507N	NM_004572	NP_004563	Q99959	PKP2_HUMAN	plakophilin 2 isoform 2b	551					cell-cell adhesion	desmosome|integral to membrane|nucleus	binding			ovary(1)|pancreas(1)	2	Lung NSC(5;9.35e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.239)					ATGTCAAAATCGAGCAAACCA	0.438													88	68					0	0	0.014410	0	0
SYT10	341359	broad.mit.edu	37	12	33529798	33529798	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:33529798G>A	uc001rll.1	-	7	1836	c.1539C>T	c.(1537-1539)TCC>TCT	p.S513S	SYT10_uc009zju.1_Silent_p.S323S	NM_198992	NP_945343	Q6XYQ8	SYT10_HUMAN	synaptotagmin X	513	Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(1)|skin(1)	2	Lung NSC(5;8.37e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0334)					GAGAAGGGCAGGATCCTTGAC	0.403													76	49					0	0	0.014410	0	0
SYT10	341359	broad.mit.edu	37	12	33535419	33535420	+	Nonsense_Mutation	DNP	CG	TA	TA			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:33535419_33535420CG>TA	uc001rll.1	-	5	1531_1532	c.1234_1235CG>TA	c.(1234-1236)CGA>TAA	p.R412*	SYT10_uc009zju.1_Nonsense_Mutation_p.R222*	NM_198992	NP_945343	Q6XYQ8	SYT10_HUMAN	synaptotagmin X	412	C2 2.|Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(1)|skin(1)	2	Lung NSC(5;8.37e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0334)					TTTTAATCTTCGACCTTCACAC	0.347													21	17					0	0	0.004672	0	0
CPNE8	144402	broad.mit.edu	37	12	39161474	39161474	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:39161474G>A	uc001rls.1	-	8	622	c.538C>T	c.(538-540)CCT>TCT	p.P180S		NM_153634	NP_705898	Q86YQ8	CPNE8_HUMAN	copine VIII	180	C2 2.									pancreas(1)	1	Esophageal squamous(101;0.187)	Lung NSC(34;0.137)|Melanoma(24;0.152)|all_lung(34;0.157)				ACAAGGAAAGGATCTGATTTT	0.289													27	31					0	0	0.009535	0	0
ABCD2	225	broad.mit.edu	37	12	39994425	39994425	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:39994425C>T	uc001rmb.2	-	6	2020	c.1594G>A	c.(1594-1596)GAA>AAA	p.E532K		NM_005164	NP_005155	Q9UBJ2	ABCD2_HUMAN	ATP-binding cassette, sub-family D, member 2	532	ABC transporter.				fatty acid metabolic process|transport	ATP-binding cassette (ABC) transporter complex|integral to plasma membrane|peroxisomal membrane	ATP binding|ATPase activity|protein binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)|central_nervous_system(1)|skin(1)	6						AGGACTCCTTCATACACAGGC	0.373													34	58					0	0	0.003271	0	0
ABCD2	225	broad.mit.edu	37	12	39997808	39997808	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:39997808C>T	uc001rmb.2	-	5	1832	c.1406G>A	c.(1405-1407)GGA>GAA	p.G469E		NM_005164	NP_005155	Q9UBJ2	ABCD2_HUMAN	ATP-binding cassette, sub-family D, member 2	469					fatty acid metabolic process|transport	ATP-binding cassette (ABC) transporter complex|integral to plasma membrane|peroxisomal membrane	ATP binding|ATPase activity|protein binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)|central_nervous_system(1)|skin(1)	6						AATAACTTTTCCTGTAATTAA	0.313													33	24					0	0	0.009535	0	0
LRRK2	120892	broad.mit.edu	37	12	40716175	40716175	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:40716175G>A	uc001rmg.3	+	37	5493	c.5372G>A	c.(5371-5373)TGG>TAG	p.W1791*	LRRK2_uc009zjw.2_Nonsense_Mutation_p.W629*|LRRK2_uc001rmi.2_Nonsense_Mutation_p.W624*	NM_198578	NP_940980	Q5S007	LRRK2_HUMAN	leucine-rich repeat kinase 2	1791					activation of MAPKK activity|determination of adult lifespan|exploration behavior|intracellular distribution of mitochondria|negative regulation of branching morphogenesis of a nerve|negative regulation of dendritic spine morphogenesis|negative regulation of neuroblast proliferation|negative regulation of neuron maturation|neuromuscular junction development|neuron death|peptidyl-serine phosphorylation|positive regulation of autophagy|positive regulation of dopamine receptor signaling pathway|positive regulation of programmed cell death|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein phosphorylation|positive regulation of protein ubiquitination|protein autophosphorylation|regulation of kidney size|regulation of locomotion|regulation of membrane potential|response to oxidative stress|small GTPase mediated signal transduction|tangential migration from the subventricular zone to the olfactory bulb	external side of mitochondrial outer membrane	ATP binding|GTP binding|GTP-dependent protein kinase activity|GTPase activator activity|MAP kinase kinase activity|protein homodimerization activity|tubulin binding			ovary(12)|stomach(5)|upper_aerodigestive_tract(2)|lung(2)|large_intestine(1)|urinary_tract(1)|pancreas(1)	24	all_cancers(12;0.00108)|Breast(8;0.218)	Lung NSC(34;0.0942)|all_lung(34;0.11)				ATGGAAGAATGGTTTCCTGGG	0.388													51	82					0	0	0.014410	0	0
ADAMTS20	80070	broad.mit.edu	37	12	43862502	43862502	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:43862502G>A	uc010skx.1	-	8	1124	c.1124C>T	c.(1123-1125)TCA>TTA	p.S375L		NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	375	Peptidase M12B.					proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		ACCTAAATATGATAAACCTGA	0.308													30	18					0	0	0.003271	0	0
ADAMTS20	80070	broad.mit.edu	37	12	43895992	43895992	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:43895992G>A	uc010skx.1	-	4	830	c.830C>T	c.(829-831)TCG>TTG	p.S277L		NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	277	Peptidase M12B.					proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		TTGCAAATTCGATCCATGAGC	0.289													13	8					0	0	0.001855	0	0
TMEM117	84216	broad.mit.edu	37	12	44238716	44238716	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:44238716C>T	uc001rod.2	+	2	328	c.262C>T	c.(262-264)CAT>TAT	p.H88Y	TMEM117_uc001roe.2_Missense_Mutation_p.P17L|TMEM117_uc009zkc.2_Missense_Mutation_p.H88Y	NM_032256	NP_115632	Q9H0C3	TM117_HUMAN	transmembrane protein 117	88						endoplasmic reticulum|integral to membrane					0	Lung SC(27;0.192)			GBM - Glioblastoma multiforme(48;0.124)		ATTTCTGTTCCATCAGCGTTT	0.373													35	22					0	0	0.008740	0	0
RACGAP1P	83956	broad.mit.edu	37	12	45457720	45457720	+	RNA	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:45457720G>A	uc001rol.2	-	1		c.1475C>T				NR_026583				Homo sapiens FKSG42 (FKSG42) mRNA, complete cds.												0						GAATCATGAGGAAAACCAATG	0.468													24	26					0	0	0.004656	0	0
RACGAP1P	83956	broad.mit.edu	37	12	45458969	45458969	+	RNA	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:45458969C>T	uc001rol.2	-	1		c.226G>A				NR_026583				Homo sapiens FKSG42 (FKSG42) mRNA, complete cds.												0						ATCAAAAGATCCTTGTATTTC	0.438													7	6					0	0	0.004482	0	0
ARID2	196528	broad.mit.edu	37	12	46246002	46246002	+	Nonsense_Mutation	SNP	A	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:46246002A>T	uc001ros.1	+	15	4096	c.4096A>T	c.(4096-4098)AAA>TAA	p.K1366*	ARID2_uc001ror.2_Nonsense_Mutation_p.K1366*|ARID2_uc009zkg.1_Nonsense_Mutation_p.K822*|ARID2_uc009zkh.1_Nonsense_Mutation_p.K993*|ARID2_uc001rou.1_Nonsense_Mutation_p.K700*	NM_152641	NP_689854	Q68CP9	ARID2_HUMAN	AT rich interactive domain 2 (ARID, RFX-like)	1366					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(6)|skin(3)|upper_aerodigestive_tract(1)	10	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.106)|all_lung(34;0.22)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.0153)		TGATTTTGATAAAGGAGATGG	0.358													11	5					0	0	0.008291	0	0
SLC38A1	81539	broad.mit.edu	37	12	46591502	46591502	+	Splice_Site	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:46591502C>T	uc001rpa.2	-	16	1620	c.1362_splice	c.e16+1	p.W454_splice	SLC38A1_uc001rpb.2_Splice_Site_p.W454_splice|SLC38A1_uc001rpc.2_Splice_Site_p.W454_splice|SLC38A1_uc001rpd.2_Splice_Site_p.W454_splice|SLC38A1_uc001rpe.2_Splice_Site_p.W454_splice|SLC38A1_uc009zkj.1_Splice_Site_p.W454_splice	NM_030674	NP_109599	Q9H2H9	S38A1_HUMAN	amino acid transporter system A1						cellular nitrogen compound metabolic process|neurotransmitter uptake	integral to membrane|plasma membrane	sodium:amino acid symporter activity			ovary(2)|skin(2)|central_nervous_system(1)	5	Lung SC(27;0.137)|Renal(347;0.236)		all cancers(1;0.00805)|OV - Ovarian serous cystadenocarcinoma(5;0.0106)|Epithelial(2;0.0344)			AAGAGACATACCCAAATTCTT	0.343													36	24					0	0	0.008740	0	0
SLC38A1	81539	broad.mit.edu	37	12	46592514	46592514	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:46592514G>A	uc001rpa.2	-	14	1274	c.1016C>T	c.(1015-1017)TCC>TTC	p.S339F	SLC38A1_uc001rpb.2_Missense_Mutation_p.S339F|SLC38A1_uc001rpc.2_Missense_Mutation_p.S339F|SLC38A1_uc001rpd.2_Missense_Mutation_p.S339F|SLC38A1_uc001rpe.2_Missense_Mutation_p.S339F|SLC38A1_uc009zkj.1_Missense_Mutation_p.S339F	NM_030674	NP_109599	Q9H2H9	S38A1_HUMAN	amino acid transporter system A1	339	Extracellular (Potential).				cellular nitrogen compound metabolic process|neurotransmitter uptake	integral to membrane|plasma membrane	sodium:amino acid symporter activity			ovary(2)|skin(2)|central_nervous_system(1)	5	Lung SC(27;0.137)|Renal(347;0.236)		all cancers(1;0.00805)|OV - Ovarian serous cystadenocarcinoma(5;0.0106)|Epithelial(2;0.0344)			AAGGAGGTCGGACTGCACGTT	0.408													18	23					0	0	0.010504	0	0
SLC38A1	81539	broad.mit.edu	37	12	46622947	46622947	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:46622947G>A	uc001rpa.2	-	5	561	c.303C>T	c.(301-303)ATC>ATT	p.I101I	SLC38A1_uc001rpb.2_Silent_p.I101I|SLC38A1_uc001rpc.2_Silent_p.I101I|SLC38A1_uc001rpd.2_Silent_p.I101I|SLC38A1_uc001rpe.2_Silent_p.I101I|SLC38A1_uc010slh.1_Silent_p.I74I|SLC38A1_uc009zkj.1_Silent_p.I101I	NM_030674	NP_109599	Q9H2H9	S38A1_HUMAN	amino acid transporter system A1	101	Extracellular (Potential).				cellular nitrogen compound metabolic process|neurotransmitter uptake	integral to membrane|plasma membrane	sodium:amino acid symporter activity			ovary(2)|skin(2)|central_nervous_system(1)	5	Lung SC(27;0.137)|Renal(347;0.236)		all cancers(1;0.00805)|OV - Ovarian serous cystadenocarcinoma(5;0.0106)|Epithelial(2;0.0344)			GAAAAAGTAGGATTCCAGTGT	0.393													7	6					0	0	0.003080	0	0
SLC38A4	55089	broad.mit.edu	37	12	47172511	47172511	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:47172511G>A	uc001rpi.2	-	11	1165	c.766C>T	c.(766-768)CAC>TAC	p.H256Y	SLC38A4_uc001rpj.2_Missense_Mutation_p.H256Y	NM_018018	NP_060488	Q969I6	S38A4_HUMAN	solute carrier family 38, member 4	256	Extracellular (Potential).				cellular nitrogen compound metabolic process|sodium ion transport	integral to membrane|plasma membrane	amino acid transmembrane transporter activity|symporter activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Lung SC(27;0.192)|Renal(347;0.236)					CCAACACTGTGATCCAAAACA	0.363													32	17					0	0	0.003755	0	0
OR8S1	341568	broad.mit.edu	37	12	48919720	48919720	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:48919720C>T	uc010slu.1	+	1	306	c.306C>T	c.(304-306)TTC>TTT	p.F102F		NM_001005203	NP_001005203	Q8NH09	OR8S1_HUMAN	olfactory receptor, family 8, subfamily S,	102	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						CTCAGGTCTTCTTTGTGTTTG	0.522													30	18					0	0	0.009535	0	0
LALBA	3906	broad.mit.edu	37	12	48962868	48962868	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:48962868C>T	uc001rrt.2	-	2	315	c.289G>A	c.(289-291)GAC>AAC	p.D97N		NM_002289	NP_002280	P00709	LALBA_HUMAN	lactalbumin, alpha- precursor	97					cell-cell signaling|defense response to bacterium|induction of apoptosis|lactose biosynthetic process|signal transduction	extracellular space	calcium ion binding|lactose synthase activity				0						TACTCACTGTCACAGGAGATG	0.483													35	25					0	0	0.006999	0	0
CELA1	1990	broad.mit.edu	37	12	51733658	51733658	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:51733658G>A	uc001ryi.1	-	6	636	c.595C>T	c.(595-597)CGC>TGC	p.R199C		NM_001971	NP_001962	Q9UNI1	CELA1_HUMAN	chymotrypsin-like elastase family, member 1	199	Peptidase S1.				proteolysis	extracellular region	metal ion binding|serine-type endopeptidase activity			breast(1)	1						CATCCAGAGCGAACTCCATCT	0.602													25	13					0	0	0.004656	0	0
GALNT6	11226	broad.mit.edu	37	12	51757921	51757921	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:51757921C>T	uc001ryk.2	-	5	1258	c.1033G>A	c.(1033-1035)GAA>AAA	p.E345K	GALNT6_uc009zma.1_RNA|GALNT6_uc001ryl.1_Missense_Mutation_p.E345K	NM_007210	NP_009141	Q8NCL4	GALT6_HUMAN	polypeptide N-acetylgalactosaminyltransferase 6	345	Lumenal (Potential).				protein O-linked glycosylation	Golgi membrane|integral to membrane|perinuclear region of cytoplasm	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)	2						GGGTAGGTTTCATCCTTGCGC	0.572													30	37					0	0	0.013726	0	0
SLC4A8	9498	broad.mit.edu	37	12	51853830	51853830	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:51853830C>T	uc001rys.1	+	8	1129	c.951C>T	c.(949-951)GCC>GCT	p.A317A	SLC4A8_uc010sni.1_Silent_p.A264A|SLC4A8_uc001rym.2_Silent_p.A264A|SLC4A8_uc001ryn.2_Silent_p.A264A|SLC4A8_uc001ryo.2_Silent_p.A264A|SLC4A8_uc001ryp.1_Silent_p.A264A|SLC4A8_uc010snj.1_Silent_p.A344A|SLC4A8_uc001ryq.3_Silent_p.A317A|SLC4A8_uc001ryr.2_Silent_p.A317A|SLC4A8_uc010snk.1_Silent_p.A264A	NM_001039960	NP_001035049	Q2Y0W8	S4A8_HUMAN	solute carrier family 4, sodium bicarbonate	317	Extracellular (Potential).				bicarbonate transport|sodium ion transport	integral to membrane|plasma membrane	inorganic anion exchanger activity			ovary(3)|pancreas(1)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(357;0.15)		CCATTGTTGCCTTTGTGAGGC	0.458													120	74					0	0	0.014410	0	0
SLC4A8	9498	broad.mit.edu	37	12	51868847	51868847	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:51868847G>A	uc001rys.1	+	16	2207	c.2029G>A	c.(2029-2031)GGA>AGA	p.G677R	SLC4A8_uc001rym.2_Missense_Mutation_p.G624R|SLC4A8_uc001ryn.2_Missense_Mutation_p.G624R|SLC4A8_uc001ryo.2_Missense_Mutation_p.G624R|SLC4A8_uc010snj.1_Missense_Mutation_p.G704R|SLC4A8_uc001ryr.2_Missense_Mutation_p.G677R|SLC4A8_uc010snk.1_Missense_Mutation_p.G624R	NM_001039960	NP_001035049	Q2Y0W8	S4A8_HUMAN	solute carrier family 4, sodium bicarbonate	677	Extracellular (Potential).				bicarbonate transport|sodium ion transport	integral to membrane|plasma membrane	inorganic anion exchanger activity			ovary(3)|pancreas(1)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(357;0.15)		GGAGATGCATGGAGAGTTCAT	0.478													17	18					0	0	0.006122	0	0
KRT83	3889	broad.mit.edu	37	12	52708473	52708473	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:52708473G>A	uc001saf.2	-	9	1487	c.1424C>T	c.(1423-1425)CCC>CTC	p.P475L		NM_002282	NP_002273	P78385	KRT83_HUMAN	keratin 83	475	Tail.				epidermis development	keratin filament	structural molecule activity			skin(1)	1	Myeloproliferative disorder(4;0.0484)|all_hematologic(5;0.088)			BRCA - Breast invasive adenocarcinoma(357;0.189)		CTGGCCACAGGGCTTGCACAA	0.672													3	4					0	0	0.004672	0	0
KRT75	9119	broad.mit.edu	37	12	52827609	52827609	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:52827609G>A	uc001saj.2	-	1	502	c.480C>T	c.(478-480)TTC>TTT	p.F160F		NM_004693	NP_004684	O95678	K2C75_HUMAN	keratin 75	160	Coil 1A.|Rod.					keratin filament	structural molecule activity				0				BRCA - Breast invasive adenocarcinoma(357;0.192)		TGAAGGAGGCGAACTTATTGT	0.562													44	51					0	0	0.014410	0	0
KRT3	3850	broad.mit.edu	37	12	53186500	53186500	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:53186500C>T	uc001say.2	-	4	1084	c.1018G>A	c.(1018-1020)GAC>AAC	p.D340N		NM_057088	NP_476429	P12035	K2C3_HUMAN	keratin 3	340	Rod.|Coil 1B.				epithelial cell differentiation|intermediate filament cytoskeleton organization	keratin filament	structural molecule activity				0						CTTACAGCGTCGTAGAGGGTC	0.473													99	73					0	0	0.014410	0	0
KRT4	3851	broad.mit.edu	37	12	53200947	53200947	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:53200947G>A	uc001saz.2	-	9	1962	c.1691C>T	c.(1690-1692)TCC>TTC	p.S564F		NM_002272	NP_002263	B4DRS2	B4DRS2_HUMAN	keratin 4	490						keratin filament	structural molecule activity			ovary(4)|skin(2)	6						TCCAGAGCCGGAGCCAAAGCC	0.562													27	20					0	0	0.009535	0	0
KRT78	196374	broad.mit.edu	37	12	53239986	53239986	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:53239986C>T	uc001sbc.1	-	4	815	c.751G>A	c.(751-753)GAA>AAA	p.E251K		NM_173352	NP_775487	Q8N1N4	K2C78_HUMAN	keratin 5b	251	Coil 1B.|Rod.					keratin filament	protein binding|structural molecule activity			ovary(2)	2						CTCACTTCTTCATTCAGATGC	0.547													13	9					0	0	0.013537	0	0
MFSD5	84975	broad.mit.edu	37	12	53647726	53647726	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:53647726C>T	uc001sci.1	+	2	1298	c.1107C>T	c.(1105-1107)ATC>ATT	p.I369I	MFSD5_uc001sch.1_Silent_p.I476I	NM_032889	NP_116278	Q6N075	MFSD5_HUMAN	major facilitator superfamily domain containing	369					transport	integral to membrane				skin(2)|ovary(1)	3						GAAAGGTGATCCCTGAGACAG	0.517													49	27					0	0	0.014410	0	0
HOXC12	3228	broad.mit.edu	37	12	54348920	54348920	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:54348920C>T	uc010soq.1	+	1	207	c.207C>T	c.(205-207)CTC>CTT	p.L69L		NM_173860	NP_776272	P31275	HXC12_HUMAN	homeobox C12	69					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			upper_aerodigestive_tract(1)	1						AGCCCTACCTCGGCAGCCCAG	0.701													10	6					0	0	0.010729	0	0
GPR84	53831	broad.mit.edu	37	12	54756450	54756450	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:54756450G>A	uc001sfu.2	-	2	1276	c.1186C>T	c.(1186-1188)CAT>TAT	p.H396Y		NM_020370	NP_065103	Q9NQS5	GPR84_HUMAN	G protein-coupled receptor 84	396	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			breast(2)	2						CAGTTCTAATGGAGCCTATGG	0.493													71	148					0	0	0.014410	0	0
PDE1B	5153	broad.mit.edu	37	12	54943669	54943669	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:54943669C>T	uc001sgd.1	+	2	179	c.13C>T	c.(13-15)CCC>TCC	p.P5S	PDE1B_uc010soz.1_5'UTR|PDE1B_uc010spa.1_5'Flank	NM_000924	NP_000915	Q01064	PDE1B_HUMAN	phosphodiesterase 1B isoform 1	5					activation of phospholipase C activity|apoptosis|nerve growth factor receptor signaling pathway|platelet activation	cytosol|nucleus	3',5'-cyclic-AMP phosphodiesterase activity|calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			upper_aerodigestive_tract(1)|ovary(1)	2						GGAGCTGTCCCCCCGCAGTCC	0.622													16	20					0	0	0.006122	0	0
LACRT	90070	broad.mit.edu	37	12	55028623	55028623	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:55028623C>T	uc001sgi.1	-	1	41	c.3G>A	c.(1-3)ATG>ATA	p.M1I		NM_033277	NP_150593	Q9GZZ8	LACRT_HUMAN	lacritin precursor	1					calcineurin-NFAT signaling pathway|positive regulation of epithelial cell proliferation|positive regulation of NFAT protein import into nucleus|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of release of sequestered calcium ion into cytosol|positive regulation of secretion|protein localization in Golgi apparatus|tear secretion	extracellular region|stored secretory granule	collagen binding|fibronectin binding|glycoprotein binding|growth factor activity|laminin-1 binding|protein N-terminus binding			central_nervous_system(1)	1						TGGTAAATTTCATTCTTTGGG	0.512													8	21					0	0	0.003080	0	0
NEUROD4	58158	broad.mit.edu	37	12	55420357	55420357	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:55420357G>A	uc001sgp.3	+	2	512	c.134G>A	c.(133-135)AGC>AAC	p.S45N		NM_021191	NP_067014	Q9HD90	NDF4_HUMAN	neurogenic differentiation 4	45					amacrine cell differentiation|positive regulation of cell differentiation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(3)|skin(1)	4						GGGATGCTCAGCAGCTTAACT	0.423													15	13					0	0	0.002450	0	0
NEUROD4	58158	broad.mit.edu	37	12	55420389	55420389	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:55420389G>A	uc001sgp.3	+	2	544	c.166G>A	c.(166-168)GAA>AAA	p.E56K		NM_021191	NP_067014	Q9HD90	NDF4_HUMAN	neurogenic differentiation 4	56	Asp/Glu-rich (acidic).				amacrine cell differentiation|positive regulation of cell differentiation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(3)|skin(1)	4						CAGTATTgaggaagaagaaga	0.423													6	10					0	0	0.001168	0	0
NEUROD4	58158	broad.mit.edu	37	12	55420921	55420921	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:55420921G>A	uc001sgp.3	+	2	1076	c.698G>A	c.(697-699)GGA>GAA	p.G233E		NM_021191	NP_067014	Q9HD90	NDF4_HUMAN	neurogenic differentiation 4	233					amacrine cell differentiation|positive regulation of cell differentiation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(3)|skin(1)	4						AAGAGTTTGGGAGAATCGTCC	0.517													42	17					0	0	0.008740	0	0
OR6C68	403284	broad.mit.edu	37	12	55886866	55886866	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:55886866C>T	uc010spo.1	+	1	720	c.720C>T	c.(718-720)GCC>GCT	p.A240A		NM_001005519	NP_001005519	A6NDL8	O6C68_HUMAN	olfactory receptor, family 6, subfamily C,	235	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						AGAAAAAAGCCTTTTCTACCT	0.333													13	14					0	0	0.013537	0	0
SLC39A5	283375	broad.mit.edu	37	12	56625139	56625139	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:56625139C>T	uc010sqj.1	+	4	338	c.81C>T	c.(79-81)CCC>CCT	p.P27P	SLC39A5_uc010sqi.1_Intron|SLC39A5_uc010sqk.1_Silent_p.P27P	NM_173596	NP_775867	Q6ZMH5	S39A5_HUMAN	solute carrier family 39 (metal ion	27	Extracellular (By similarity).				zinc ion transport	basolateral plasma membrane|integral to membrane	metal ion transmembrane transporter activity			ovary(1)|skin(1)	2						GCTCAGTCCCCAACCTGGGCC	0.632													62	41					0	0	0.014410	0	0
MYO1A	4640	broad.mit.edu	37	12	57423348	57423348	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:57423348C>T	uc001smw.3	-	26	2991	c.2748G>A	c.(2746-2748)CTG>CTA	p.L916L	MYO1A_uc010sqz.1_Silent_p.L754L|MYO1A_uc009zpd.2_Silent_p.L916L	NM_005379	NP_005370	Q9UBC5	MYO1A_HUMAN	myosin IA	916					sensory perception of sound|vesicle localization	brush border|cortical actin cytoskeleton|filamentous actin|lateral plasma membrane|microvillus|myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|urinary_tract(1)	7						GGCCCTTGGTCAGGAGGAGAA	0.552													33	18					0	0	0.012213	0	0
MYO1A	4640	broad.mit.edu	37	12	57431726	57431726	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:57431726C>T	uc001smw.3	-	18	2131	c.1888G>A	c.(1888-1890)GGT>AGT	p.G630S	MYO1A_uc010sqz.1_Missense_Mutation_p.G468S|MYO1A_uc009zpd.2_Missense_Mutation_p.G630S	NM_005379	NP_005370	Q9UBC5	MYO1A_HUMAN	myosin IA	630	Myosin head-like.				sensory perception of sound|vesicle localization	brush border|cortical actin cytoskeleton|filamentous actin|lateral plasma membrane|microvillus|myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|urinary_tract(1)	7						GGCCCATAACCCTGGCGGTGG	0.632													23	15					0	0	0.002780	0	0
LRP1	4035	broad.mit.edu	37	12	57589508	57589508	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:57589508C>T	uc001snd.2	+	53	8971	c.8505C>T	c.(8503-8505)TTC>TTT	p.F2835F		NM_002332	NP_002323	Q07954	LRP1_HUMAN	low density lipoprotein-related protein 1	2835	LDL-receptor class A 18.|Extracellular (Potential).				aorta morphogenesis|apoptotic cell clearance|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of Wnt receptor signaling pathway|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			ovary(8)|lung(3)|breast(3)|large_intestine(2)|central_nervous_system(2)|skin(2)|pancreas(2)	22				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	CCAAGCACTTCGTGTGTGACC	0.622													10	32					0	0	0.008291	0	0
LRP1	4035	broad.mit.edu	37	12	57600306	57600306	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:57600306C>T	uc001snd.2	+	76	12107	c.11641C>T	c.(11641-11643)CTG>TTG	p.L3881L		NM_002332	NP_002323	Q07954	LRP1_HUMAN	low density lipoprotein-related protein 1	3881	Extracellular (Potential).				aorta morphogenesis|apoptotic cell clearance|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of Wnt receptor signaling pathway|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			ovary(8)|lung(3)|breast(3)|large_intestine(2)|central_nervous_system(2)|skin(2)|pancreas(2)	22				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	GATCCGCAGCCTGTTCCCCGG	0.597													14	12					0	0	0.002450	0	0
LRP1	4035	broad.mit.edu	37	12	57600440	57600440	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:57600440C>T	uc001snd.2	+	76	12241	c.11775C>T	c.(11773-11775)TCC>TCT	p.S3925S		NM_002332	NP_002323	Q07954	LRP1_HUMAN	low density lipoprotein-related protein 1	3925	Extracellular (Potential).|LDL-receptor class B 31.				aorta morphogenesis|apoptotic cell clearance|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of Wnt receptor signaling pathway|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			ovary(8)|lung(3)|breast(3)|large_intestine(2)|central_nervous_system(2)|skin(2)|pancreas(2)	22				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	GCACCATCTCCTACCGCAGCC	0.607													23	14					0	0	0.003954	0	0
LRP1	4035	broad.mit.edu	37	12	57604507	57604507	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:57604507C>T	uc001snd.2	+	83	13227	c.12761C>T	c.(12760-12762)CCC>CTC	p.P4254L		NM_002332	NP_002323	Q07954	LRP1_HUMAN	low density lipoprotein-related protein 1	4254	EGF-like 18.|Extracellular (Potential).				aorta morphogenesis|apoptotic cell clearance|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of Wnt receptor signaling pathway|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			ovary(8)|lung(3)|breast(3)|large_intestine(2)|central_nervous_system(2)|skin(2)|pancreas(2)	22				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	CCAGGCATGCCCACGTGCCGG	0.657													52	40					0	0	0.014410	0	0
GLI1	2735	broad.mit.edu	37	12	57865069	57865069	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:57865069C>T	uc001snx.2	+	12	2624	c.2546C>T	c.(2545-2547)TCC>TTC	p.S849F	GLI1_uc009zpq.2_Missense_Mutation_p.S721F	NM_005269	NP_005260	P08151	GLI1_HUMAN	GLI family zinc finger 1 isoform 1	849					epidermal cell differentiation|negative regulation of canonical Wnt receptor signaling pathway|osteoblast differentiation|positive regulation of DNA replication|positive regulation of smoothened signaling pathway|positive regulation of transcription from RNA polymerase II promoter	cytosol|nucleus	transcription regulatory region DNA binding|zinc ion binding			skin(4)|ovary(4)|breast(3)|central_nervous_system(1)|urinary_tract(1)|kidney(1)|pancreas(1)	15			GBM - Glioblastoma multiforme(3;3.99e-32)			CCTCTCTTTTCCCATTACCCC	0.617													5	34					0	0	0.001168	0	0
KIF5A	3798	broad.mit.edu	37	12	57969034	57969034	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:57969034C>T	uc001sor.1	+	16	2092	c.1884C>T	c.(1882-1884)TCC>TCT	p.S628S	KIF5A_uc010srr.1_Silent_p.S539S	NM_004984	NP_004975	Q12840	KIF5A_HUMAN	kinesin family member 5A	628					blood coagulation|cell death|microtubule-based movement|synaptic transmission	cytosol|kinesin complex|membrane fraction|microtubule|perinuclear region of cytoplasm	ATP binding|microtubule motor activity			ovary(2)|skin(1)	3						AGCTCTCATCCTGCCAGCTCC	0.542													17	9					0	0	0.006122	0	0
SLC16A7	9194	broad.mit.edu	37	12	60173326	60173326	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:60173326G>A	uc001sqs.2	+	6	1602	c.1303G>A	c.(1303-1305)GAA>AAA	p.E435K	SLC16A7_uc001sqt.2_Missense_Mutation_p.E435K|SLC16A7_uc001squ.2_Missense_Mutation_p.E435K|SLC16A7_uc009zqi.2_Missense_Mutation_p.E336K|SLC16A7_uc010ssi.1_Missense_Mutation_p.E336K	NM_004731	NP_004722	O60669	MOT2_HUMAN	solute carrier family 16, member 7	435	Cytoplasmic (Potential).					integral to plasma membrane|membrane fraction	pyruvate secondary active transmembrane transporter activity|secondary active monocarboxylate transmembrane transporter activity|symporter activity			ovary(1)	1				GBM - Glioblastoma multiforme(3;0.0303)	Pyruvic acid(DB00119)	GCTTGCAAAGGAAAGGAAGGA	0.418													3	12					0	0	0.004672	0	0
Unknown	0	broad.mit.edu	37	12	63359279	63359279	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:63359279G>A	uc001srn.1	+	1	180	c.175G>A	c.(175-177)GAT>AAT	p.D59N						SubName: Full=Putative uncharacterized protein RPL14P1;																		GCAGCTCACTGATTTCATCCT	0.507													21	13					0	0	0.012319	0	0
AVPR1A	552	broad.mit.edu	37	12	63541221	63541221	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:63541221C>T	uc001sro.1	-	2	3149	c.1175G>A	c.(1174-1176)CGA>CAA	p.R392Q		NM_000706	NP_000697	P37288	V1AR_HUMAN	arginine vasopressin receptor 1A	392	Cytoplasmic (Potential).				activation of phospholipase C activity|elevation of cytosolic calcium ion concentration|generation of precursor metabolites and energy	endosome|integral to plasma membrane	protein kinase C binding|vasopressin receptor activity				0			BRCA - Breast invasive adenocarcinoma(9;0.193)	GBM - Glioblastoma multiforme(28;0.0569)	Conivaptan(DB00872)|Desmopressin(DB00035)|Felypressin(DB00093)|Terlipressin(DB02638)|Vasopressin(DB00067)	TGTTGGGCTTCGATTGTTAGA	0.403													57	32					0	0	0.014410	0	0
C12orf56	115749	broad.mit.edu	37	12	64746706	64746706	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:64746706G>A	uc001ssa.3	-	2	383	c.383C>T	c.(382-384)CCA>CTA	p.P128L	uc001srx.2_Intron	NM_001099676	NP_001093146	Q8IXR9	CL056_HUMAN	hypothetical protein LOC115749	128											0			GBM - Glioblastoma multiforme(3;0.000582)	GBM - Glioblastoma multiforme(28;0.0259)		ATGATGAAATGGAAATAGGAA	0.313													19	6					0	0	0.007413	0	0
XPOT	11260	broad.mit.edu	37	12	64819643	64819643	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:64819643C>T	uc001ssb.2	+	15	2047	c.1621C>T	c.(1621-1623)CGG>TGG	p.R541W		NM_007235	NP_009166	O43592	XPOT_HUMAN	tRNA exportin	541	Necessary for tRNA-binding, cytoplasmic localization and nuclear export.			KVRSR->AVRSA: Does not abolish binding to tRNA. Does not abolish shuttling behavior.	intracellular protein transport|tRNA export from nucleus	cytoplasm|nucleoplasm	protein transporter activity|tRNA binding			ovary(2)	2				GBM - Glioblastoma multiforme(28;0.0404)		TGCAAAAGTTCGGAGCAGGAC	0.363													91	69					0	0	0.014410	0	0
WIF1	11197	broad.mit.edu	37	12	65514243	65514243	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:65514243G>A	uc001ssk.2	-	2	387	c.242C>T	c.(241-243)CCT>CTT	p.P81L		NM_007191	NP_009122	Q9Y5W5	WIF1_HUMAN	WNT inhibitory factor 1 precursor	81	WIF.				multicellular organismal development|Wnt receptor signaling pathway	extracellular region	protein tyrosine kinase activity			ovary(2)|lung(1)|skin(1)	4			LUAD - Lung adenocarcinoma(6;0.0234)|LUSC - Lung squamous cell carcinoma(43;0.0975)	GBM - Glioblastoma multiforme(28;0.0231)		GATATTGACAGGAATAGCTGG	0.408			T	HMGA2	pleomorphic salivary gland adenoma								26	32					0	0	0.006320	0	0
LRRC10	376132	broad.mit.edu	37	12	70004117	70004117	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:70004117C>T	uc001svc.2	-	1	826	c.502G>A	c.(502-504)GAG>AAG	p.E168K		NM_201550	NP_963844	Q5BKY1	LRC10_HUMAN	leucine rich repeat containing 10	168	LRR 6.					nucleus					0	all_cancers(2;2.83e-105)|Breast(13;9.83e-07)|Esophageal squamous(21;0.187)		Epithelial(6;1.98e-18)|GBM - Glioblastoma multiforme(2;7.43e-12)|Lung(24;0.000185)|OV - Ovarian serous cystadenocarcinoma(12;0.00126)|STAD - Stomach adenocarcinoma(21;0.00501)|Kidney(9;0.143)|LUSC - Lung squamous cell carcinoma(43;0.24)			GTCCTCAGCTCCTGGAGGCGC	0.607													9	47					0	0	0.004482	0	0
RAB3IP	117177	broad.mit.edu	37	12	70150412	70150412	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:70150412G>A	uc001svp.2	+	3	974	c.527G>A	c.(526-528)CGA>CAA	p.R176Q	RAB3IP_uc001svl.1_Missense_Mutation_p.R160Q|RAB3IP_uc001svm.2_Missense_Mutation_p.R160Q|RAB3IP_uc001svn.2_Missense_Mutation_p.R160Q|RAB3IP_uc001svo.2_RNA|RAB3IP_uc001svq.2_Missense_Mutation_p.R176Q|RAB3IP_uc001svr.2_RNA|RAB3IP_uc001svs.2_RNA	NM_175623	NP_783322	Q96QF0	RAB3I_HUMAN	RAB3A interacting protein isoform alpha 2	176	Potential.				cilium assembly|Golgi to plasma membrane transport|protein localization to organelle|protein transport	actin cortical patch|centrosome|cytosol|lamellipodium|microtubule basal body|nucleus	guanyl-nucleotide exchange factor activity|protein binding			ovary(1)	1	Esophageal squamous(21;0.187)		Lung(24;0.000381)|OV - Ovarian serous cystadenocarcinoma(12;0.00168)|STAD - Stomach adenocarcinoma(21;0.00694)			GGCTATGAACGATTAAAAGAA	0.383													39	29					0	0	0.010771	0	0
PTPRB	5787	broad.mit.edu	37	12	70933413	70933413	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:70933413C>T	uc001swb.3	-	24	5146	c.5116G>A	c.(5116-5118)GAA>AAA	p.E1706K	PTPRB_uc010sto.1_Missense_Mutation_p.E1616K|PTPRB_uc010stp.1_Missense_Mutation_p.E1616K|PTPRB_uc001swc.3_Missense_Mutation_p.E1924K|PTPRB_uc001swa.3_Missense_Mutation_p.E1836K	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	1706	Cytoplasmic (Potential).|Tyrosine-protein phosphatase.				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			ACCTCGTATTCCTTGGATAGA	0.383													5	4					0	0	0.001168	0	0
PTPRB	5787	broad.mit.edu	37	12	70954499	70954499	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:70954499T>C	uc001swb.3	-	15	3760	c.3730A>G	c.(3730-3732)ACT>GCT	p.T1244A	PTPRB_uc010sto.1_Missense_Mutation_p.T1154A|PTPRB_uc010stp.1_Missense_Mutation_p.T1154A|PTPRB_uc001swc.3_Missense_Mutation_p.T1462A|PTPRB_uc001swa.3_Missense_Mutation_p.T1374A|PTPRB_uc001swd.3_Missense_Mutation_p.T1461A|PTPRB_uc009zrr.1_Missense_Mutation_p.T1341A	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	1244	Fibronectin type-III 14.|Extracellular (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			CCACTGTGAGTTACCACCCAC	0.527													29	9					0	0	0.012213	0	0
PTPRB	5787	broad.mit.edu	37	12	70963486	70963486	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:70963486C>T	uc001swb.3	-	12	2979	c.2949G>A	c.(2947-2949)CTG>CTA	p.L983L	PTPRB_uc010sto.1_Silent_p.L983L|PTPRB_uc010stp.1_Silent_p.L893L|PTPRB_uc001swc.3_Silent_p.L1201L|PTPRB_uc001swa.3_Silent_p.L1113L|PTPRB_uc001swd.3_Silent_p.L1200L|PTPRB_uc009zrr.1_Silent_p.L1080L	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	983	Fibronectin type-III 11.|Extracellular (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			TCTGATTCTTCAGGGACCCGC	0.517													29	11					0	0	0.007291	0	0
PTPRB	5787	broad.mit.edu	37	12	70986322	70986322	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:70986322G>A	uc001swb.3	-	5	896	c.866C>T	c.(865-867)CCC>CTC	p.P289L	PTPRB_uc010sto.1_Missense_Mutation_p.P289L|PTPRB_uc010stp.1_Missense_Mutation_p.P289L|PTPRB_uc001swc.3_Missense_Mutation_p.P507L|PTPRB_uc001swa.3_Missense_Mutation_p.P507L|PTPRB_uc001swd.3_Missense_Mutation_p.P506L|PTPRB_uc009zrr.1_Missense_Mutation_p.P386L|PTPRB_uc001swe.2_Missense_Mutation_p.P507L	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	289	Fibronectin type-III 4.|Extracellular (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			GACTTCCATGGGGGCTAATCA	0.403													19	12					0	0	0.002780	0	0
TRHDE	29953	broad.mit.edu	37	12	72893403	72893403	+	Silent	SNP	C	T	T	rs138225464		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:72893403C>T	uc001sxa.2	+	6	1605	c.1575C>T	c.(1573-1575)ATC>ATT	p.I525I		NM_013381	NP_037513	Q9UKU6	TRHDE_HUMAN	thyrotropin-releasing hormone degrading enzyme	525	Extracellular (Potential).				cell-cell signaling|proteolysis|signal transduction	integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3						TTGACTGGATCGCATATAAAA	0.388													21	12					0	0	0.002780	0	0
NAV3	89795	broad.mit.edu	37	12	78511887	78511887	+	Missense_Mutation	SNP	T	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:78511887T>A	uc001syp.2	+	14	3023	c.2850T>A	c.(2848-2850)GAT>GAA	p.D950E	NAV3_uc001syo.2_Missense_Mutation_p.D950E|NAV3_uc010sub.1_Missense_Mutation_p.D450E|NAV3_uc009zsf.2_5'UTR	NM_014903	NP_055718	Q8IVL0	NAV3_HUMAN	neuron navigator 3	950						nuclear outer membrane	ATP binding|nucleoside-triphosphatase activity			large_intestine(6)|ovary(5)|lung(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	17						CAGAAGAAGATTTTGACAGCC	0.488										HNSCC(70;0.22)			65	46					0	0	0.014410	0	0
NAV3	89795	broad.mit.edu	37	12	78594372	78594372	+	Splice_Site	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:78594372G>A	uc001syp.2	+	38	7007	c.6834_splice	c.e38+1	p.Q2278_splice	NAV3_uc001syo.2_Splice_Site_p.Q2256_splice|NAV3_uc010sub.1_Splice_Site_p.Q1735_splice|NAV3_uc009zsf.2_Splice_Site_p.Q1087_splice	NM_014903	NP_055718	Q8IVL0	NAV3_HUMAN	neuron navigator 3							nuclear outer membrane	ATP binding|nucleoside-triphosphatase activity			large_intestine(6)|ovary(5)|lung(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	17						GGGTCTTCAGGTATAGTACTC	0.318										HNSCC(70;0.22)			23	11					0	0	0.014323	0	0
PAWR	5074	broad.mit.edu	37	12	80014943	80014943	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:80014943C>T	uc001syx.2	-	3	847	c.561G>A	c.(559-561)CGG>CGA	p.R187R		NM_002583	NP_002574	Q96IZ0	PAWR_HUMAN	PRKC, apoptosis, WT1, regulator	187	Selective for apoptosis induction in cancer cells (SAC).|Potential.				actin filament bundle assembly|apoptosis|induction of apoptosis|negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	actin binding|enzyme binding|leucine zipper domain binding|transcription corepressor activity				0						CTTCTCGTTTCCGCTCTTTCT	0.363													19	94					0	0	0.008871	0	0
Unknown	0	broad.mit.edu	37	12	80761442	80761442	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:80761442C>T	uc009zsg.1	+	8	647	c.46C>T	c.(46-48)CTG>TTG	p.L16L	uc001szd.2_Silent_p.L155L					RecName: Full=Uncharacterized protein C12orf64;																		TATAGAGTGTCTGGAAGAAAA	0.323													9	0					0	0	0.004482	0	0
PPFIA2	8499	broad.mit.edu	37	12	81678083	81678083	+	Splice_Site	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:81678083C>T	uc001szo.1	-	25	3087	c.2926_splice	c.e25-1	p.P976_splice	PPFIA2_uc010sue.1_Intron|PPFIA2_uc010sug.1_Splice_Site|PPFIA2_uc010suh.1_Intron|PPFIA2_uc010sui.1_Splice_Site|PPFIA2_uc010suj.1_Splice_Site|PPFIA2_uc009zsi.1_Intron|PPFIA2_uc010suf.1_Intron|PPFIA2_uc009zsh.2_Intron	NM_003625	NP_003616	B7Z663	B7Z663_HUMAN	PTPRF interacting protein alpha 2											ovary(3)|lung(2)|pancreas(1)	6						TGCCTGAAGGCTAGTGAGGAG	0.473													9	7					0	0	0.008291	0	0
PPFIA2	8499	broad.mit.edu	37	12	81734885	81734885	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:81734885G>A	uc001szo.1	-	20	2526	c.2365C>T	c.(2365-2367)CCT>TCT	p.P789S	PPFIA2_uc010sue.1_Intron|PPFIA2_uc010sug.1_RNA|PPFIA2_uc010suh.1_RNA|PPFIA2_uc010sui.1_RNA|PPFIA2_uc010suj.1_RNA|PPFIA2_uc009zsi.1_RNA|PPFIA2_uc010suf.1_RNA|PPFIA2_uc009zsh.2_RNA	NM_003625	NP_003616	B7Z663	B7Z663_HUMAN	PTPRF interacting protein alpha 2	715										ovary(3)|lung(2)|pancreas(1)	6						TAGGAAGAAGGGAGAGTGTGA	0.473													31	21					0	0	0.012213	0	0
LRRIQ1	84125	broad.mit.edu	37	12	85492772	85492772	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:85492772G>A	uc001tac.2	+	13	3320	c.3209G>A	c.(3208-3210)AGC>AAC	p.S1070N	LRRIQ1_uc001tab.1_Missense_Mutation_p.S1070N	NM_001079910	NP_001073379	Q96JM4	LRIQ1_HUMAN	leucine-rich repeats and IQ motif containing 1	1070	LRR 9.									ovary(4)|central_nervous_system(1)|skin(1)	6				GBM - Glioblastoma multiforme(134;0.212)		TCTCAAAACAGGTAAAAGCAT	0.289													6	21					0	0	0.001168	0	0
C12orf50	160419	broad.mit.edu	37	12	88379725	88379725	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:88379725C>T	uc001tam.1	-	11	1196	c.1028G>A	c.(1027-1029)AGG>AAG	p.R343K	C12orf50_uc001tan.2_Missense_Mutation_p.R358K	NM_152589	NP_689802	Q8NA57	CL050_HUMAN	hypothetical protein LOC160419	343										skin(2)|ovary(1)	3						CGCGACAGTCCTGACAGCATC	0.488													49	35					0	0	0.014410	0	0
PLXNC1	10154	broad.mit.edu	37	12	94642108	94642108	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:94642108C>T	uc001tdc.2	+	14	2947	c.2698C>T	c.(2698-2700)CAA>TAA	p.Q900*		NM_005761	NP_005752	O60486	PLXC1_HUMAN	plexin C1 precursor	900	Extracellular (Potential).				axon guidance|cell adhesion	integral to membrane|intracellular|plasma membrane	receptor activity|receptor binding			ovary(2)|central_nervous_system(1)	3						TACTAGAAATCAAGATCTTAC	0.373													21	14					0	0	0.012319	0	0
FGD6	55785	broad.mit.edu	37	12	95500772	95500772	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:95500772C>T	uc001tdp.3	-	13	3599	c.3375G>A	c.(3373-3375)GGG>GGA	p.G1125G	FGD6_uc009zsx.2_Silent_p.G258G|FGD6_uc001tdq.1_Silent_p.G161G	NM_018351	NP_060821	Q6ZV73	FGD6_HUMAN	FYVE, RhoGEF and PH domain containing 6	1125	PH 1.				actin cytoskeleton organization|filopodium assembly|regulation of Cdc42 GTPase activity|regulation of cell shape	cytoskeleton|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(2)|breast(1)	3						GTTTATACATCCCAGACTGCA	0.328													21	103					0	0	0.006320	0	0
NTN4	59277	broad.mit.edu	37	12	96131721	96131721	+	Missense_Mutation	SNP	A	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:96131721A>T	uc001tei.2	-	3	1236	c.787T>A	c.(787-789)TTC>ATC	p.F263I	NTN4_uc009ztf.2_Missense_Mutation_p.F263I|NTN4_uc009ztg.2_Missense_Mutation_p.F226I	NM_021229	NP_067052	Q9HB63	NET4_HUMAN	netrin 4 precursor	263	Laminin EGF-like 1.				axon guidance	basement membrane|plasma membrane				upper_aerodigestive_tract(1)|ovary(1)	2						CCATTGCAGAAGCAGCTGCCC	0.478													19	27					0	0	0.007413	0	0
HAL	3034	broad.mit.edu	37	12	96384198	96384198	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:96384198C>T	uc001tem.1	-	10	1125	c.828G>A	c.(826-828)CCG>CCA	p.P276P	HAL_uc009zti.1_RNA|HAL_uc010suw.1_Silent_p.P68P|HAL_uc010sux.1_Silent_p.P276P	NM_002108	NP_002099	P42357	HUTH_HUMAN	histidine ammonia-lyase	276					biosynthetic process|histidine catabolic process	cytosol	histidine ammonia-lyase activity			ovary(2)|skin(1)	3					L-Histidine(DB00117)	AGCCACTCTTCGGAGACCACA	0.498													51	30					0	0	0.014410	0	0
C12orf63	374467	broad.mit.edu	37	12	97073515	97073515	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:97073515C>T	uc001tet.1	+	7	1054	c.976C>T	c.(976-978)CTT>TTT	p.L326F		NM_198520	NP_940922	Q6ZTY8	CL063_HUMAN	hypothetical protein LOC374467	326										skin(6)|ovary(1)	7						TTCATTATTTCTTGCACAGAC	0.428													60	36					0	0	0.014410	0	0
C12orf63	374467	broad.mit.edu	37	12	97137206	97137206	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:97137206C>T	uc001tet.1	+	20	2599	c.2521C>T	c.(2521-2523)CTC>TTC	p.L841F		NM_198520	NP_940922	Q6ZTY8	CL063_HUMAN	hypothetical protein LOC374467	841										skin(6)|ovary(1)	7						TTGCCTGAGCCTCATCAATGA	0.408													15	13					0	0	0.004007	0	0
UHRF1BP1L	23074	broad.mit.edu	37	12	100496634	100496634	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:100496634G>A	uc001tgq.2	-	4	477	c.248C>T	c.(247-249)TCC>TTC	p.S83F	UHRF1BP1L_uc001tgr.2_Missense_Mutation_p.S83F	NM_015054	NP_055869	A0JNW5	UH1BL_HUMAN	UHRF1 (ICBP90) binding protein 1-like isoform a	83										ovary(2)	2						TTTATCCAGGGACTAATAAAA	0.294													26	10					0	0	0.003330	0	0
C12orf42	374470	broad.mit.edu	37	12	103795408	103795408	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:103795408C>T	uc001tjt.2	-	3	212	c.124G>A	c.(124-126)GAT>AAT	p.D42N	C12orf42_uc001tjs.2_RNA|C12orf42_uc009zuf.1_Missense_Mutation_p.D42N|C12orf42_uc001tju.2_5'UTR	NM_198521	NP_940923	Q96LP6	CL042_HUMAN	hypothetical protein LOC374470	42										ovary(1)|central_nervous_system(1)	2						GTGCTTCTATCCCACAGGGTG	0.438													18	13					0	0	0.006122	0	0
STAB2	55576	broad.mit.edu	37	12	104031985	104031985	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:104031985G>A	uc001tjw.2	+	8	1087	c.901G>A	c.(901-903)GGA>AGA	p.G301R		NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	301	Extracellular (Potential).				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						TGATGGGCCTGGACAGGTGAG	0.473													14	9					0	0	0.004007	0	0
STAB2	55576	broad.mit.edu	37	12	104063338	104063338	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:104063338G>A	uc001tjw.2	+	21	2378	c.2192G>A	c.(2191-2193)GGC>GAC	p.G731D		NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	731	Extracellular (Potential).				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						TGCTGCAAAGGCTTCTATGGA	0.453													52	32					0	0	0.014410	0	0
ACACB	32	broad.mit.edu	37	12	109631465	109631465	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:109631465C>T	uc001tob.2	+	16	2531	c.2412C>T	c.(2410-2412)CTC>CTT	p.L804L	ACACB_uc001toc.2_Silent_p.L804L	NM_001093	NP_001084	O00763	ACACB_HUMAN	acetyl-Coenzyme A carboxylase beta	804					acetyl-CoA metabolic process|carnitine shuttle|energy reserve metabolic process|fatty acid biosynthetic process|positive regulation of cellular metabolic process|protein homotetramerization|regulation of fatty acid oxidation	cytosol|endomembrane system|Golgi apparatus|membrane	acetyl-CoA carboxylase activity|ATP binding|biotin carboxylase activity|metal ion binding|protein binding			ovary(5)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	8					Biotin(DB00121)	GCCAGGTCCTCCCAGCGGATT	0.493													25	12					0	0	0.009535	0	0
ATP2A2	488	broad.mit.edu	37	12	110782763	110782764	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:110782763_110782764CC>TT	uc001tqk.3	+	17	3157_3158	c.2594_2595CC>TT	c.(2593-2595)TCC>TTT	p.S865F	ATP2A2_uc001tql.3_Missense_Mutation_p.S865F|ATP2A2_uc010sxy.1_Missense_Mutation_p.S838F|ATP2A2_uc001tqn.3_5'Flank|ATP2A2_uc009zvn.2_5'Flank	NM_170665	NP_733765	P16615	AT2A2_HUMAN	ATPase, Ca++ transporting, slow twitch 2 isoform	865	Lumenal (By similarity).				ATP biosynthetic process|cell adhesion|epidermis development|platelet activation|sarcoplasmic reticulum calcium ion transport	integral to plasma membrane|microsome|platelet dense tubular network membrane|sarcoplasmic reticulum membrane	ATP binding|calcium-transporting ATPase activity|protein C-terminus binding|S100 alpha binding			ovary(3)|skin(1)	4						CCAAGAGTGTCCTTCTACCAGC	0.505													46	22					0	0	0.004672	0	0
C12orf51	283450	broad.mit.edu	37	12	112645736	112645736	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:112645736G>A	uc009zwc.2	-	45	6825	c.6807C>T	c.(6805-6807)TTC>TTT	p.F2269F	C12orf51_uc001ttr.1_Silent_p.F444F	NM_001109662	NP_001103132			chromosome 12 open reading frame 51											ovary(1)|lung(1)	2						CTTCATTGCGGAAGCGTCTTC	0.507													14	9					0	0	0.003163	0	0
RPH3A	22895	broad.mit.edu	37	12	113306318	113306318	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:113306318G>A	uc010syl.1	+	8	890	c.528G>A	c.(526-528)AAG>AAA	p.K176K	RPH3A_uc001ttz.2_Silent_p.K176K|RPH3A_uc001tty.2_Silent_p.K172K|RPH3A_uc009zwe.1_Silent_p.K172K|RPH3A_uc010sym.1_Silent_p.K127K|RPH3A_uc001tua.2_5'UTR	NM_001143854	NP_001137326	Q9Y2J0	RP3A_HUMAN	rabphilin 3A homolog isoform 1	176	Pro-rich.				intracellular protein transport	cell junction|synaptic vesicle	Rab GTPase binding|transporter activity|zinc ion binding			ovary(3)|central_nervous_system(2)|skin(2)	7				BRCA - Breast invasive adenocarcinoma(302;0.00453)		AGAAGACCAAGCCCCAGCAGC	0.597													31	18					0	0	0.010818	0	0
OAS3	4940	broad.mit.edu	37	12	113388611	113388611	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:113388611C>T	uc001tug.2	+	7	1575	c.1488C>T	c.(1486-1488)ATC>ATT	p.I496I		NM_006187	NP_006178	Q9Y6K5	OAS3_HUMAN	2'-5'oligoadenylate synthetase 3	496	OAS domain 2.				interferon-gamma-mediated signaling pathway|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|type I interferon-mediated signaling pathway	microsome	ATP binding|nucleotidyltransferase activity|RNA binding			central_nervous_system(1)	1						GCGCAGAGATCCTTGATGAGA	0.587													49	41					0	0	0.014410	0	0
OAS3	4940	broad.mit.edu	37	12	113407527	113407527	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:113407527G>A	uc001tug.2	+	15	3306	c.3219G>A	c.(3217-3219)CGG>CGA	p.R1073R		NM_006187	NP_006178	Q9Y6K5	OAS3_HUMAN	2'-5'oligoadenylate synthetase 3	1073	OAS domain 3.				interferon-gamma-mediated signaling pathway|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|type I interferon-mediated signaling pathway	microsome	ATP binding|nucleotidyltransferase activity|RNA binding	p.R1073Q(1)		central_nervous_system(1)	1						GCATGGGACGGAATGGCATCC	0.622													19	8					0	0	0.014323	0	0
SDSL	113675	broad.mit.edu	37	12	113865868	113865868	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:113865868C>T	uc001tvi.2	+	3	291	c.81C>T	c.(79-81)TCC>TCT	p.S27S	SDSL_uc009zwh.2_Silent_p.S27S	NM_138432	NP_612441	Q96GA7	SDSL_HUMAN	serine dehydratase-like	27					cellular amino acid metabolic process		L-serine ammonia-lyase activity|L-threonine ammonia-lyase activity|pyridoxal phosphate binding				0					Pyridoxal Phosphate(DB00114)	GGGCGCTGTCCCAGGTGGCGG	0.567													10	15					0	0	0.006214	0	0
NOS1	4842	broad.mit.edu	37	12	117665424	117665424	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:117665424C>T	uc001twm.1	-	23	4114	c.3428G>A	c.(3427-3429)TGG>TAG	p.W1143*		NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	1143	FAD-binding FR-type.				multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	GCCCCATTTCCATTCCTCGTA	0.592													29	24					0	0	0.010818	0	0
NOS1	4842	broad.mit.edu	37	12	117703244	117703244	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:117703244G>A	uc001twm.1	-	12	2699	c.2013C>T	c.(2011-2013)TAC>TAT	p.Y671Y		NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	671					multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	CCCGGCAGCGGTACTCATTCT	0.607													9	7					0	0	0.004482	0	0
NOS1	4842	broad.mit.edu	37	12	117710301	117710301	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:117710301G>A	uc001twm.1	-	10	2414	c.1728C>T	c.(1726-1728)CTC>CTT	p.L576L		NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	576					multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	CAATCTCTAGGAGCATGTTGG	0.612													21	16					0	0	0.014323	0	0
NOS1	4842	broad.mit.edu	37	12	117768619	117768619	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:117768619C>T	uc001twm.1	-	2	942	c.256G>A	c.(256-258)GGC>AGC	p.G86S		NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	86	Interaction with NOSIP (By similarity).|PDZ.				multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	GAGGCAATGCCTCTGAGTACC	0.602													30	17					0	0	0.012213	0	0
KSR2	283455	broad.mit.edu	37	12	117914306	117914306	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:117914306G>A	uc001two.2	-	17	2513	c.2458C>T	c.(2458-2460)CTC>TTC	p.L820F		NM_173598	NP_775869	Q6VAB6	KSR2_HUMAN	kinase suppressor of ras 2	849	Protein kinase.				intracellular signal transduction	cytoplasm|membrane	ATP binding|metal ion binding|protein serine/threonine kinase activity			lung(10)|central_nervous_system(2)|stomach(1)|large_intestine(1)|breast(1)	15	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					GAGAAGGGGAGCTTATCCTCC	0.612													10	5					0	0	0.008291	0	0
KSR2	283455	broad.mit.edu	37	12	117962898	117962898	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:117962898C>T	uc001two.2	-	14	1946	c.1891G>A	c.(1891-1893)GAC>AAC	p.D631N		NM_173598	NP_775869	Q6VAB6	KSR2_HUMAN	kinase suppressor of ras 2	660					intracellular signal transduction	cytoplasm|membrane	ATP binding|metal ion binding|protein serine/threonine kinase activity			lung(10)|central_nervous_system(2)|stomach(1)|large_intestine(1)|breast(1)	15	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					AAGGGGATGTCCCACTCCTGA	0.617													32	28					0	0	0.004289	0	0
KSR2	283455	broad.mit.edu	37	12	117992998	117992998	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:117992998G>A	uc001two.2	-	9	1462	c.1407C>T	c.(1405-1407)CTC>CTT	p.L469L		NM_173598	NP_775869	Q6VAB6	KSR2_HUMAN	kinase suppressor of ras 2	498					intracellular signal transduction	cytoplasm|membrane	ATP binding|metal ion binding|protein serine/threonine kinase activity			lung(10)|central_nervous_system(2)|stomach(1)|large_intestine(1)|breast(1)	15	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					TGGTTTTGGGGAGCGTCTGAC	0.567													11	9					0	0	0.010729	0	0
KSR2	283455	broad.mit.edu	37	12	118105313	118105313	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:118105313G>A	uc001two.2	-	5	1105	c.1050C>T	c.(1048-1050)ACC>ACT	p.T350T		NM_173598	NP_775869	Q6VAB6	KSR2_HUMAN	kinase suppressor of ras 2	379					intracellular signal transduction	cytoplasm|membrane	ATP binding|metal ion binding|protein serine/threonine kinase activity			lung(10)|central_nervous_system(2)|stomach(1)|large_intestine(1)|breast(1)	15	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					GAACAGGAGGGGTGGAAGGCA	0.632													8	6					0	0	0.003080	0	0
SRRM4	84530	broad.mit.edu	37	12	119583234	119583234	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:119583234C>T	uc001txa.1	+	9	1112	c.820C>T	c.(820-822)CCG>TCG	p.P274S		NM_194286	NP_919262	A7MD48	SRRM4_HUMAN	KIAA1853 protein	274	Ser-rich.				cell differentiation|mRNA processing|nervous system development|regulation of RNA splicing|RNA splicing	nucleus	mRNA binding			ovary(2)	2						AACAGCCAGCCCGCTCACCAC	0.612													3	6					0	0	0.004672	0	0
HSPB8	26353	broad.mit.edu	37	12	119631570	119631570	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:119631570C>T	uc001txb.2	+	3	1021	c.498C>T	c.(496-498)ATC>ATT	p.I166I	HSPB8_uc001txc.2_3'UTR	NM_014365	NP_055180	Q9UJY1	HSPB8_HUMAN	heat shock 22kDa protein 8	166					cell death|response to heat	cytoplasm|nucleus	identical protein binding|protein serine/threonine kinase activity			central_nervous_system(1)|skin(1)	2	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					TGCTGATCATCGAAGCTCCCC	0.498													21	27					0	0	0.010504	0	0
CCDC60	160777	broad.mit.edu	37	12	119942892	119942892	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:119942892C>T	uc001txe.2	+	7	1132	c.667C>T	c.(667-669)CCC>TCC	p.P223S	uc001txf.2_Intron	NM_178499	NP_848594	Q8IWA6	CCD60_HUMAN	coiled-coil domain containing 60	223										ovary(2)|upper_aerodigestive_tract(1)	3	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.207)		ATTCAAAATTCCCACAATGCG	0.393													36	24					0	0	0.004289	0	0
CCDC60	160777	broad.mit.edu	37	12	119943007	119943007	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:119943007C>T	uc001txe.2	+	7	1247	c.782C>T	c.(781-783)TCG>TTG	p.S261L	uc001txf.2_Intron	NM_178499	NP_848594	Q8IWA6	CCD60_HUMAN	coiled-coil domain containing 60	261										ovary(2)|upper_aerodigestive_tract(1)	3	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.207)		AACCCTGGCTCGGATGAGCCC	0.567													44	86					0	0	0.014410	0	0
GCN1L1	10985	broad.mit.edu	37	12	120576637	120576637	+	Silent	SNP	G	A	A	rs61733796	by1000genomes	TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:120576637G>A	uc001txo.2	-	46	6031	c.6018C>T	c.(6016-6018)CTC>CTT	p.L2006L		NM_006836	NP_006827	Q92616	GCN1L_HUMAN	GCN1 general control of amino-acid synthesis	2006	HEAT 17.				regulation of translation	ribosome	protein binding|translation factor activity, nucleic acid binding			ovary(4)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					CCGTGGGCACGAGGGATTCAG	0.557													64	47					0	0	0.014410	0	0
ACADS	35	broad.mit.edu	37	12	121174915	121174915	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:121174915G>A	uc001tza.3	+	3	455	c.337G>A	c.(337-339)GGA>AGA	p.G113R	ACADS_uc010szl.1_Missense_Mutation_p.G113R|ACADS_uc001tzb.3_Missense_Mutation_p.G40R	NM_000017	NP_000008	P16219	ACADS_HUMAN	short-chain acyl-CoA dehydrogenase precursor	113						mitochondrial matrix	butyryl-CoA dehydrogenase activity			central_nervous_system(2)	2	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)	Lung NSC(355;0.163)			NADH(DB00157)	CGCCTCCACCGGAGTCATCAT	0.677													105	68					0	0	0.014410	0	0
CAMKK2	10645	broad.mit.edu	37	12	121682391	121682391	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:121682391G>A	uc001tzu.2	-	16	1705	c.1581C>T	c.(1579-1581)TCC>TCT	p.S527S	CAMKK2_uc001tzt.2_Intron|CAMKK2_uc001tzv.2_Silent_p.S527S|CAMKK2_uc001tzw.2_Silent_p.S484S|CAMKK2_uc001tzx.2_Intron|CAMKK2_uc001tzy.2_Intron|CAMKK2_uc001tzz.1_Silent_p.S314S|CAMKK2_uc001uaa.1_Silent_p.S527S|CAMKK2_uc001uab.2_Silent_p.S527S|CAMKK2_uc001uac.2_Silent_p.S484S	NM_006549	NP_006540	Q96RR4	KKCC2_HUMAN	calcium/calmodulin-dependent protein kinase	527					calcium-mediated signaling|MAPKKK cascade|positive regulation of transcription, DNA-dependent|protein autophosphorylation|regulation of protein kinase activity	cytoplasm	ATP binding|calcium ion binding|calmodulin binding|calmodulin-dependent protein kinase activity|protein tyrosine kinase activity			lung(1)|large_intestine(1)|stomach(1)	3	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					GCTCAGACAGGGACTCACATT	0.637													37	134					0	0	0.006230	0	0
ABCB9	23457	broad.mit.edu	37	12	123419895	123419895	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:123419895G>A	uc001udm.3	-	10	2137	c.1827C>T	c.(1825-1827)TTC>TTT	p.F609F	ABCB9_uc010tai.1_Silent_p.F216F|ABCB9_uc009zxr.2_Intron|ABCB9_uc001udo.3_Silent_p.F566F|ABCB9_uc010taj.1_Silent_p.F546F|ABCB9_uc001udp.2_Silent_p.F609F|ABCB9_uc001udq.2_Silent_p.F328F	NM_019625	NP_062571	Q9NP78	ABCB9_HUMAN	ATP-binding cassette, sub-family B (MDR/TAP),	609	ABC transporter.				positive regulation of T cell mediated cytotoxicity|protein transport	lysosomal membrane|plasma membrane|TAP complex	ATP binding|MHC class I protein binding|oligopeptide-transporting ATPase activity|peptide antigen binding|protein homodimerization activity|TAP1 binding|TAP2 binding|tapasin binding				0	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;6.84e-05)|Epithelial(86;0.000152)|BRCA - Breast invasive adenocarcinoma(302;0.111)		CCACCATCTCGAAAGGCACAG	0.637													12	12					0	0	0.010729	0	0
ABCB9	23457	broad.mit.edu	37	12	123433332	123433332	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:123433332C>T	uc001udm.3	-	5	1202	c.892G>A	c.(892-894)GAC>AAC	p.D298N	ABCB9_uc009zxr.2_Intron|ABCB9_uc001udo.3_Missense_Mutation_p.D298N|ABCB9_uc010taj.1_Missense_Mutation_p.D298N|ABCB9_uc001udp.2_Missense_Mutation_p.D298N|ABCB9_uc001udq.2_Missense_Mutation_p.D80N|ABCB9_uc001udr.2_Missense_Mutation_p.D298N	NM_019625	NP_062571	Q9NP78	ABCB9_HUMAN	ATP-binding cassette, sub-family B (MDR/TAP),	298	ABC transmembrane type-1.				positive regulation of T cell mediated cytotoxicity|protein transport	lysosomal membrane|plasma membrane|TAP complex	ATP binding|MHC class I protein binding|oligopeptide-transporting ATPase activity|peptide antigen binding|protein homodimerization activity|TAP1 binding|TAP2 binding|tapasin binding				0	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;6.84e-05)|Epithelial(86;0.000152)|BRCA - Breast invasive adenocarcinoma(302;0.111)		GAGACCAGGTCGCTGACCATG	0.617													18	12					0	0	0.010504	0	0
DNAH10	196385	broad.mit.edu	37	12	124319972	124319972	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:124319972G>A	uc001uft.3	+	27	4470	c.4445G>A	c.(4444-4446)AGA>AAA	p.R1482K		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	1482	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		TTGGTTCAGAGAAAATGGATG	0.378													7	2					0	0	0.004482	0	0
DNAH10	196385	broad.mit.edu	37	12	124364269	124364270	+	Missense_Mutation	DNP	TC	GT	GT			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:124364269_124364270TC>GT	uc001uft.3	+	49	8226_8227	c.8201_8202TC>GT	c.(8200-8202)TTC>TGT	p.F2734C		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	2734					microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		TTTGGAGACTTCCAGATGGCTC	0.51													102	71					0	0	0.004672	0	0
DNAH10	196385	broad.mit.edu	37	12	124387580	124387580	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:124387580C>T	uc001uft.3	+	56	9406	c.9381C>T	c.(9379-9381)ACC>ACT	p.T3127T		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	3127	Potential.|Stalk (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		CCGAGACGACCCTGGCAGAGG	0.567													9	6					0	0	0.004482	0	0
DNAH10	196385	broad.mit.edu	37	12	124387620	124387620	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:124387620G>A	uc001uft.3	+	56	9446	c.9421G>A	c.(9421-9423)GAA>AAA	p.E3141K		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	3141	Stalk (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		CGCCAAGCTGGAACTGCAGAA	0.567													10	6					0	0	0.010729	0	0
UBC	7316	broad.mit.edu	37	12	125396452	125396452	+	Silent	SNP	G	A	A	rs71458872		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:125396452G>A	uc001ugs.3	-	2	2314	c.1866C>T	c.(1864-1866)ACC>ACT	p.T622T	UBC_uc001ugr.2_RNA|UBC_uc001ugu.1_Silent_p.T546T|UBC_uc001ugt.2_Silent_p.T470T|UBC_uc001ugv.2_Silent_p.T90T	NM_021009	NP_066289	P0CG48	UBC_HUMAN	ubiquitin C	622	Ubiquitin-like 9.				activation of MAPK activity|anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|anti-apoptosis|apoptosis|cellular membrane organization|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA repair|endosome transport|epidermal growth factor receptor signaling pathway|G1/S transition of mitotic cell cycle|I-kappaB kinase/NF-kappaB cascade|induction of apoptosis by extracellular signals|innate immune response|JNK cascade|M/G1 transition of mitotic cell cycle|mRNA metabolic process|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of type I interferon production|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|S phase of mitotic cell cycle|stress-activated MAPK cascade|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|viral reproduction	cytosol|endocytic vesicle membrane|endosome membrane|nucleoplasm|plasma membrane	protein binding			ovary(2)	2	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;6.17e-05)|Epithelial(86;0.000207)|all cancers(50;0.00308)		CCACCTCGAGGGTGATGGTCT	0.527													7	112					0	0	0.008291	0	0
UBC	7316	broad.mit.edu	37	12	125397978	125397978	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:125397978G>A	uc001ugs.3	-	2	788	c.340C>T	c.(340-342)CCT>TCT	p.P114S	UBC_uc001ugr.2_5'Flank|UBC_uc001ugu.1_Missense_Mutation_p.P114S|UBC_uc001ugt.2_Missense_Mutation_p.P114S|UBC_uc001ugv.2_Intron|UBC_uc001ugw.2_5'UTR	NM_021009	NP_066289	P0CG48	UBC_HUMAN	ubiquitin C	114	Ubiquitin-like 2.				activation of MAPK activity|anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|anti-apoptosis|apoptosis|cellular membrane organization|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA repair|endosome transport|epidermal growth factor receptor signaling pathway|G1/S transition of mitotic cell cycle|I-kappaB kinase/NF-kappaB cascade|induction of apoptosis by extracellular signals|innate immune response|JNK cascade|M/G1 transition of mitotic cell cycle|mRNA metabolic process|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of type I interferon production|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|S phase of mitotic cell cycle|stress-activated MAPK cascade|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|viral reproduction	cytosol|endocytic vesicle membrane|endosome membrane|nucleoplasm|plasma membrane	protein binding			ovary(2)	2	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;6.17e-05)|Epithelial(86;0.000207)|all cancers(50;0.00308)		TGCTGGTCAGGAGGAATGCCT	0.542													61	46					0	0	0.014410	0	0
AACS	65985	broad.mit.edu	37	12	125576000	125576000	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:125576000C>T	uc001uhc.2	+	5	707	c.501C>T	c.(499-501)GTC>GTT	p.V167V	AACS_uc009zyg.2_RNA|AACS_uc001uhd.2_Silent_p.V167V|AACS_uc009zyh.2_RNA	NM_023928	NP_076417	Q86V21	AACS_HUMAN	acetoacetyl-CoA synthetase	167					fatty acid metabolic process	cytosol	acetoacetate-CoA ligase activity|ATP binding			ovary(1)|liver(1)|central_nervous_system(1)	3	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;9.82e-05)|Epithelial(86;0.000642)|all cancers(50;0.00843)		AGCACGCTGTCGAGGCGATGC	0.552													10	26					0	0	0.006214	0	0
PIWIL1	9271	broad.mit.edu	37	12	130833935	130833935	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:130833935C>T	uc001uik.2	+	8	976	c.886C>T	c.(886-888)CAA>TAA	p.Q296*	PIWIL1_uc001uij.1_Nonsense_Mutation_p.Q296*	NM_004764	NP_004755	Q96J94	PIWL1_HUMAN	piwi-like 1	296	PAZ.				gene silencing by RNA|meiosis|multicellular organismal development|regulation of translation|spermatid development	chromatoid body|P granule	mRNA binding|piRNA binding|protein binding			ovary(2)	2	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;3.02e-06)|Epithelial(86;3.85e-05)|all cancers(50;4.65e-05)		ACATAAATTTCAAGAACAAGT	0.343													5	11					0	0	0.001984	0	0
EP400	57634	broad.mit.edu	37	12	132562175	132562175	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:132562175C>T	uc001ujn.2	+	52	9364	c.9329C>T	c.(9328-9330)CCT>CTT	p.P3110L	EP400_uc001ujl.2_Missense_Mutation_p.P3109L|EP400_uc001ujm.2_Missense_Mutation_p.P3029L|EP400_uc001ujp.2_Missense_Mutation_p.P320L|EP400_uc010tbo.1_Silent_p.P176P	NM_015409	NP_056224	Q96L91	EP400_HUMAN	E1A binding protein p400	3146					histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent	NuA4 histone acetyltransferase complex|nuclear speck	ATP binding|DNA binding|helicase activity			central_nervous_system(4)|ovary(3)|breast(3)|skin(2)	12	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.198)		OV - Ovarian serous cystadenocarcinoma(86;3.01e-08)|Epithelial(86;3.43e-07)|all cancers(50;2.01e-06)		ATGAGGGTCCCTGCTGTCAGG	0.612													6	7					0	0	0.001168	0	0
LOC284232	284232	broad.mit.edu	37	13	19425970	19425970	+	RNA	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr13:19425970C>T	uc010tcj.1	-	1		c.20140G>A				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						CAGGATCTTCCATTTCAGTGC	0.313													10	34					0	0	0.008871	0	0
SACS	26278	broad.mit.edu	37	13	23908129	23908129	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr13:23908129G>A	uc001uon.2	-	10	10475	c.9886C>T	c.(9886-9888)CCT>TCT	p.P3296S	SACS_uc001uoo.2_Missense_Mutation_p.P3149S|SACS_uc001uop.1_Intron|SACS_uc001uoq.1_Intron	NM_014363	NP_055178	Q9NZJ4	SACS_HUMAN	sacsin	3296					cell death|negative regulation of inclusion body assembly|protein folding	axon|cell body fiber|dendrite|mitochondrion|nucleus	ATP binding|chaperone binding|Hsp70 protein binding|proteasome binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		all_cancers(29;1.51e-22)|all_epithelial(30;7.82e-19)|all_lung(29;4.71e-18)|Lung SC(185;0.0225)|Breast(139;0.128)		all cancers(112;0.00197)|Epithelial(112;0.00854)|OV - Ovarian serous cystadenocarcinoma(117;0.0298)|Lung(94;0.189)		TCTCCTTCAGGAACCACAAGC	0.413													21	25					0	0	0.014323	0	0
SACS	26278	broad.mit.edu	37	13	23909674	23909674	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr13:23909674G>A	uc001uon.2	-	10	8930	c.8341C>T	c.(8341-8343)CAT>TAT	p.H2781Y	SACS_uc001uoo.2_Missense_Mutation_p.H2634Y|SACS_uc001uop.1_Intron|SACS_uc001uoq.1_Intron	NM_014363	NP_055178	Q9NZJ4	SACS_HUMAN	sacsin	2781					cell death|negative regulation of inclusion body assembly|protein folding	axon|cell body fiber|dendrite|mitochondrion|nucleus	ATP binding|chaperone binding|Hsp70 protein binding|proteasome binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		all_cancers(29;1.51e-22)|all_epithelial(30;7.82e-19)|all_lung(29;4.71e-18)|Lung SC(185;0.0225)|Breast(139;0.128)		all cancers(112;0.00197)|Epithelial(112;0.00854)|OV - Ovarian serous cystadenocarcinoma(117;0.0298)|Lung(94;0.189)		ACAGATGCATGAAATTGTTTC	0.353													20	22					0	0	0.007413	0	0
PARP4	143	broad.mit.edu	37	13	25009566	25009566	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr13:25009566C>T	uc001upl.2	-	31	3819	c.3713G>A	c.(3712-3714)CGA>CAA	p.R1238Q		NM_006437	NP_006428	Q9UKK3	PARP4_HUMAN	poly (ADP-ribose) polymerase family, member 4	1238	Nuclear localization signal (Potential).				cell death|DNA repair|inflammatory response|protein ADP-ribosylation|response to drug|transport	cytoplasm|nucleus|ribonucleoprotein complex|spindle microtubule	DNA binding|enzyme binding|NAD+ ADP-ribosyltransferase activity			ovary(3)|skin(1)	4		all_epithelial(30;7.67e-16)|Lung SC(185;0.0225)|Breast(139;0.052)		all cancers(112;0.000127)|Epithelial(112;0.000778)|Kidney(163;0.039)|OV - Ovarian serous cystadenocarcinoma(117;0.0578)|KIRC - Kidney renal clear cell carcinoma(186;0.135)|Lung(94;0.195)		CCTATGTTTTCGTTTGGATAA	0.373													10	47					0	0	0.006214	0	0
ATP12A	479	broad.mit.edu	37	13	25272843	25272843	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr13:25272843G>A	uc001upp.2	+	12	1747	c.1560G>A	c.(1558-1560)ATG>ATA	p.M520I	ATP12A_uc010aaa.2_Missense_Mutation_p.M526I	NM_001676	NP_001667	P54707	AT12A_HUMAN	hydrogen/potassium-exchanging ATPase 12A	520	Cytoplasmic (Potential).				ATP biosynthetic process	hydrogen:potassium-exchanging ATPase complex	ATP binding|hydrogen:potassium-exchanging ATPase activity|metal ion binding			ovary(2)|central_nervous_system(2)|large_intestine(1)|breast(1)	6		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0307)|Epithelial(112;0.086)|OV - Ovarian serous cystadenocarcinoma(117;0.228)	Esomeprazole(DB00736)|Pantoprazole(DB00213)	GCTTCCTCATGGTGATGAAGG	0.552													7	27					0	0	0.001984	0	0
RNF17	56163	broad.mit.edu	37	13	25439030	25439030	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr13:25439030G>A	uc001upr.2	+	29	4036	c.3995G>A	c.(3994-3996)TGG>TAG	p.W1332*	RNF17_uc010aab.2_RNA|RNF17_uc010tde.1_Nonsense_Mutation_p.W1328*|RNF17_uc001ups.2_Nonsense_Mutation_p.W1271*|RNF17_uc010aac.2_Nonsense_Mutation_p.W524*|RNF17_uc010aad.2_Intron	NM_031277	NP_112567	Q9BXT8	RNF17_HUMAN	ring finger protein 17	1332					multicellular organismal development	cytoplasm|nucleus	hydrolase activity, acting on ester bonds|nucleic acid binding|zinc ion binding			ovary(1)|skin(1)	2		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0114)|OV - Ovarian serous cystadenocarcinoma(117;0.0311)|Epithelial(112;0.0524)		AAAAATCCATGGGAGAAATTG	0.289													33	21					0	0	0.004878	0	0
PABPC3	5042	broad.mit.edu	37	13	25671071	25671071	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr13:25671071G>A	uc001upy.2	+	1	796	c.735G>A	c.(733-735)CAG>CAA	p.Q245Q		NM_030979	NP_112241	Q9H361	PABP3_HUMAN	poly(A) binding protein, cytoplasmic 3	245	RRM 3.				mRNA metabolic process	cytoplasm	nucleotide binding|poly(A) RNA binding			ovary(3)|skin(1)	4		Lung SC(185;0.0225)|Breast(139;0.0602)		all cancers(112;0.0071)|Epithelial(112;0.0398)|OV - Ovarian serous cystadenocarcinoma(117;0.151)|GBM - Glioblastoma multiforme(144;0.222)|Lung(94;0.241)		AAGATGCACAGAAAGCTGTAG	0.433													5	44					0	0	0.000602	0	0
NUPL1	9818	broad.mit.edu	37	13	25894702	25894702	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr13:25894702C>T	uc001uqi.2	+	8	991	c.745C>T	c.(745-747)CCT>TCT	p.P249S	NUPL1_uc001uqg.1_Missense_Mutation_p.P249S|NUPL1_uc001uqj.2_Missense_Mutation_p.P237S	NM_014089	NP_054808	Q9BVL2	NUPL1_HUMAN	nucleoporin like 1 isoform a	249	14 X 2 AA repeats of F-G.				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	nuclear membrane|nuclear pore					0		Lung SC(185;0.0225)|Breast(139;0.0351)		all cancers(112;0.0092)|Epithelial(112;0.0477)|OV - Ovarian serous cystadenocarcinoma(117;0.165)|GBM - Glioblastoma multiforme(144;0.244)		AAATCTACCTCCTGTCATCTG	0.328													7	51					0	0	0.008291	0	0
WASF3	10810	broad.mit.edu	37	13	27216450	27216450	+	Silent	SNP	C	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr13:27216450C>A	uc001uqv.2	+	3	268	c.43C>A	c.(43-45)CGG>AGG	p.R15R	WASF3_uc001uqw.2_Silent_p.R15R	NM_006646	NP_006637	Q9UPY6	WASF3_HUMAN	WAS protein family, member 3	15					actin filament polymerization	cytoplasm|cytoskeleton	actin binding			pancreas(1)	1	Colorectal(5;0.000247)	Lung SC(185;0.0156)|Breast(139;0.147)		all cancers(112;0.0114)|Epithelial(112;0.046)|OV - Ovarian serous cystadenocarcinoma(117;0.0547)|Lung(94;0.105)|LUSC - Lung squamous cell carcinoma(192;0.155)		GCACTTGTGCCGGGGAGCTCT	0.448													23	51					4.72057e-08	5.07005e-08	0.003954	1	0
WASF3	10810	broad.mit.edu	37	13	27256988	27256988	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr13:27256988C>T	uc001uqv.2	+	9	1453	c.1228C>T	c.(1228-1230)CCC>TCC	p.P410S	WASF3_uc001uqw.2_Missense_Mutation_p.P407S	NM_006646	NP_006637	Q9UPY6	WASF3_HUMAN	WAS protein family, member 3	410	Poly-Pro.				actin filament polymerization	cytoplasm|cytoskeleton	actin binding			pancreas(1)	1	Colorectal(5;0.000247)	Lung SC(185;0.0156)|Breast(139;0.147)		all cancers(112;0.0114)|Epithelial(112;0.046)|OV - Ovarian serous cystadenocarcinoma(117;0.0547)|Lung(94;0.105)|LUSC - Lung squamous cell carcinoma(192;0.155)		CCCTCCTGGTCCCGGGTCTTC	0.687													11	45					0	0	0.008291	0	0
GPR12	2835	broad.mit.edu	37	13	27333913	27333913	+	Missense_Mutation	SNP	C	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr13:27333913C>G	uc010aal.2	-	2	274	c.52G>C	c.(52-54)GAT>CAT	p.D18H	GPR12_uc010tdl.1_Intron	NM_005288	NP_005279	P47775	GPR12_HUMAN	G protein-coupled receptor 12	18	Extracellular (Potential).					integral to plasma membrane					0	Colorectal(5;5.77e-05)	Breast(139;0.198)		Epithelial(112;9.37e-07)|OV - Ovarian serous cystadenocarcinoma(117;1.16e-06)|all cancers(112;8.31e-06)|GBM - Glioblastoma multiforme(144;0.00121)|Lung(94;0.111)|LUSC - Lung squamous cell carcinoma(192;0.184)		GCAGCGGCATCTAAATAATCC	0.502													3	45					0	0	0.004672	0	0
PRHOXNB	646625	broad.mit.edu	37	13	28562651	28562652	+	Nonsense_Mutation	DNP	CC	AT	AT			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr13:28562651_28562652CC>AT	uc010aan.1	-	1	123_124	c.123_124GG>AT	c.(121-126)TTGGAA>TTATAA	p.E42*		NM_001105577	NP_001099047	A6NGE7	URAD_HUMAN	parahox cluster neighbor	42					allantoin biosynthetic process|purine base metabolic process	peroxisome	carboxy-lyase activity				0	all_cancers(110;0.12)|all_hematologic(3;0.0119)|Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0161)	Colorectal(13;0.000157)|READ - Rectum adenocarcinoma(15;0.105)	GBM - Glioblastoma multiforme(144;0.0407)|all cancers(112;0.0491)|OV - Ovarian serous cystadenocarcinoma(117;0.199)		TCTAAATCTTCCAAATCAGAGA	0.46													6	41					0	0	0.004672	0	0
SLC46A3	283537	broad.mit.edu	37	13	29278211	29278211	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr13:29278211G>A	uc001usi.2	-	4	2140	c.1170C>T	c.(1168-1170)TTC>TTT	p.F390F	SLC46A3_uc001usg.2_Silent_p.F315F|SLC46A3_uc001usj.2_Silent_p.F390F|SLC46A3_uc001ush.2_Silent_p.F390F	NM_181785	NP_861450	Q7Z3Q1	S46A3_HUMAN	solute carrier family 46, member 3 isoform a	390	Helical; (Potential).				transmembrane transport	integral to membrane				central_nervous_system(1)|skin(1)	2		Lung SC(185;0.0367)		all cancers(112;0.159)		GTGTTTCTAAGAAAGCAATAC	0.413													26	36					0	0	0.009535	0	0
MTUS2	23281	broad.mit.edu	37	13	29601010	29601010	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr13:29601010C>T	uc001usl.3	+	1	2263	c.2205C>T	c.(2203-2205)TTC>TTT	p.F735F		NM_001033602	NP_001028774	Q5JR59	MTUS2_HUMAN	hypothetical protein LOC23281 isoform a	725	Mediates interaction with MAPRE1.					cytoplasm|microtubule	microtubule binding|protein homodimerization activity				0						GACATCCTTTCAGTCAAATGA	0.433													6	36					0	0	0.004482	0	0
RXFP2	122042	broad.mit.edu	37	13	32367143	32367143	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr13:32367143G>A	uc001utt.2	+	16	1775	c.1704G>A	c.(1702-1704)GGG>GGA	p.G568G	RXFP2_uc010aba.2_Silent_p.G527G	NM_130806	NP_570718	Q8WXD0	RXFP2_HUMAN	relaxin/insulin-like family peptide receptor 2	568	Extracellular (Potential).					integral to membrane|plasma membrane					0		Lung SC(185;0.0262)		all cancers(112;0.000559)|Epithelial(112;0.0017)|OV - Ovarian serous cystadenocarcinoma(117;0.0145)|BRCA - Breast invasive adenocarcinoma(63;0.0535)		ACTTTTATGGGAAAAATGGAG	0.343													12	22					0	0	0.001855	0	0
FRY	10129	broad.mit.edu	37	13	32811855	32811855	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr13:32811855C>T	uc001utx.2	+	44	6646	c.6150C>T	c.(6148-6150)GCC>GCT	p.A2050A	FRY_uc010tdw.1_RNA	NM_023037	NP_075463	Q5TBA9	FRY_HUMAN	furry homolog	2050					regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane				ovary(5)|large_intestine(1)|skin(1)	7		Lung SC(185;0.0271)		all cancers(112;4.81e-05)|Epithelial(112;0.000656)|OV - Ovarian serous cystadenocarcinoma(117;0.0123)|BRCA - Breast invasive adenocarcinoma(63;0.0295)|GBM - Glioblastoma multiforme(144;0.104)		TCACAGTGGCCTTGATGGAGT	0.488													3	24					0	0	0.004672	0	0
N4BP2L2	10443	broad.mit.edu	37	13	33012862	33012862	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr13:33012862G>A	uc010abe.1	-	8	2184	c.2162C>T	c.(2161-2163)CCT>CTT	p.P721L	N4BP2L2_uc001uug.2_Missense_Mutation_p.P604L|N4BP2L2_uc010abd.1_Missense_Mutation_p.P634L|N4BP2L2_uc001uuh.2_Missense_Mutation_p.P552L|N4BP2L2_uc001uuj.2_Missense_Mutation_p.P140L|N4BP2L2_uc010tdz.1_Missense_Mutation_p.P706L	NM_033111	NP_149102	Q92802	N42L2_HUMAN	phosphonoformate immuno-associated protein 5	Error:Variant_position_missing_in_Q92802_after_alignment											0		Lung SC(185;0.0262)		all cancers(112;9.5e-07)|Epithelial(112;5.07e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.00196)|BRCA - Breast invasive adenocarcinoma(63;0.00438)|GBM - Glioblastoma multiforme(144;0.243)		ATAGTCATCAGGCAACAAGGA	0.358													6	6					0	0	0.003080	0	0
KL	9365	broad.mit.edu	37	13	33629411	33629411	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr13:33629411C>T	uc001uus.2	+	3	1566	c.1558C>T	c.(1558-1560)CCC>TCC	p.P520S	KL_uc001uur.1_Missense_Mutation_p.P213S	NM_004795	NP_004786	Q9UEF7	KLOT_HUMAN	klotho precursor	520	Glycosyl hydrolase-1 2.|Extracellular (Potential).				aging|carbohydrate metabolic process|insulin receptor signaling pathway|positive regulation of bone mineralization	extracellular space|extracellular space|integral to membrane|integral to plasma membrane|membrane fraction|soluble fraction	beta-glucosidase activity|beta-glucuronidase activity|cation binding|fibroblast growth factor binding|hormone activity|signal transducer activity|vitamin D binding			large_intestine(1)|ovary(1)|skin(1)	3	all_epithelial(80;0.133)	Ovarian(182;1.78e-06)|Breast(139;4.08e-05)|Hepatocellular(188;0.00886)|Lung SC(185;0.0262)		GBM - Glioblastoma multiforme(144;7.13e-230)|all cancers(112;1.33e-165)|OV - Ovarian serous cystadenocarcinoma(117;1.09e-113)|Epithelial(112;3.79e-112)|Lung(94;8.52e-27)|LUSC - Lung squamous cell carcinoma(192;1.4e-13)|Kidney(163;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(186;5.63e-08)|BRCA - Breast invasive adenocarcinoma(63;1.41e-05)		AGGGACATTTCCCTGTGACTT	0.438													19	31					0	0	0.007413	0	0
DCLK1	9201	broad.mit.edu	37	13	36428682	36428682	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr13:36428682G>A	uc001uvf.2	-	6	1222	c.989C>T	c.(988-990)TCG>TTG	p.S330L	DCLK1_uc001uve.3_Missense_Mutation_p.S23L|DCLK1_uc010teh.1_Missense_Mutation_p.S23L|DCLK1_uc010abk.2_Missense_Mutation_p.S23L|DCLK1_uc001uvh.3_RNA	NM_004734	NP_004725	O15075	DCLK1_HUMAN	doublecortin-like kinase 1	330	Pro/Ser-rich.				cell differentiation|central nervous system development|endosome transport|intracellular signal transduction|response to virus	integral to plasma membrane	ATP binding|protein serine/threonine kinase activity|receptor signaling protein activity			stomach(6)|ovary(2)|skin(1)	9		Breast(139;0.0147)|Lung SC(185;0.0685)|Prostate(109;0.122)	KIRC - Kidney renal clear cell carcinoma(5;0.119)|Kidney(79;0.169)	all cancers(112;1.72e-06)|Epithelial(112;4.24e-05)|BRCA - Breast invasive adenocarcinoma(63;0.00159)|OV - Ovarian serous cystadenocarcinoma(117;0.0158)|GBM - Glioblastoma multiforme(144;0.0638)		TGGGCTTGGCGACTTGCCTGA	0.493													8	51					0	0	0.006214	0	0
SOHLH2	54937	broad.mit.edu	37	13	36744763	36744763	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr13:36744763G>A	uc001uvj.2	-	10	1251	c.1162C>T	c.(1162-1164)CAT>TAT	p.H388Y	SOHLH2_uc010tei.1_Missense_Mutation_p.H465Y	NM_017826	NP_060296	Q9NX45	SOLH2_HUMAN	spermatogenesis and oogenesis specific basic	388					cell differentiation|multicellular organismal development|oogenesis|regulation of transcription, DNA-dependent|spermatogenesis|transcription, DNA-dependent	nucleus	DNA binding				0		Breast(139;0.0615)|Lung SC(185;0.0743)|Prostate(109;0.184)	KIRC - Kidney renal clear cell carcinoma(5;0.119)|Kidney(79;0.169)	all cancers(112;4.63e-08)|Epithelial(112;2.67e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.00272)|BRCA - Breast invasive adenocarcinoma(63;0.00685)|GBM - Glioblastoma multiforme(144;0.0273)		GAAGGTAAATGAATTGAAATG	0.483													25	38					0	0	0.003954	0	0
CCNA1	8900	broad.mit.edu	37	13	37016772	37016772	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr13:37016772G>A	uc001uvr.3	+	9	1718	c.1368G>A	c.(1366-1368)ATG>ATA	p.M456I	CCNA1_uc010teo.1_Missense_Mutation_p.M412I|CCNA1_uc010abq.2_Missense_Mutation_p.M412I|CCNA1_uc010abp.2_Missense_Mutation_p.M412I|CCNA1_uc001uvs.3_Missense_Mutation_p.M455I|CCNA1_uc010abr.2_RNA	NM_003914	NP_003905	P78396	CCNA1_HUMAN	cyclin A1 isoform a	456					cell division|G2/M transition of mitotic cell cycle|male meiosis I|mitosis|regulation of cyclin-dependent protein kinase activity|regulation of transcription involved in G1/S phase of mitotic cell cycle|spermatogenesis	cytosol|microtubule cytoskeleton|nucleoplasm	protein kinase binding			lung(2)|skin(2)|ovary(1)	5		Breast(139;0.014)|Lung SC(185;0.0548)|Prostate(109;0.174)	KIRC - Kidney renal clear cell carcinoma(5;0.119)|Kidney(79;0.169)	all cancers(112;1.91e-07)|Epithelial(112;1.22e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00623)|BRCA - Breast invasive adenocarcinoma(63;0.0119)|GBM - Glioblastoma multiforme(144;0.0242)		TGTCCCTCATGGAGCCACCTG	0.443													9	38					0	0	0.006214	0	0
CCNA1	8900	broad.mit.edu	37	13	37016791	37016791	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr13:37016791C>T	uc001uvr.3	+	9	1737	c.1387C>T	c.(1387-1389)CTT>TTT	p.L463F	CCNA1_uc010teo.1_Missense_Mutation_p.L419F|CCNA1_uc010abq.2_Missense_Mutation_p.L419F|CCNA1_uc010abp.2_Missense_Mutation_p.L419F|CCNA1_uc001uvs.3_Missense_Mutation_p.L462F|CCNA1_uc010abr.2_RNA	NM_003914	NP_003905	P78396	CCNA1_HUMAN	cyclin A1 isoform a	463					cell division|G2/M transition of mitotic cell cycle|male meiosis I|mitosis|regulation of cyclin-dependent protein kinase activity|regulation of transcription involved in G1/S phase of mitotic cell cycle|spermatogenesis	cytosol|microtubule cytoskeleton|nucleoplasm	protein kinase binding			lung(2)|skin(2)|ovary(1)	5		Breast(139;0.014)|Lung SC(185;0.0548)|Prostate(109;0.174)	KIRC - Kidney renal clear cell carcinoma(5;0.119)|Kidney(79;0.169)	all cancers(112;1.91e-07)|Epithelial(112;1.22e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00623)|BRCA - Breast invasive adenocarcinoma(63;0.0119)|GBM - Glioblastoma multiforme(144;0.0242)		TGCAGTTCTTCTTCTACAATA	0.443													6	33					0	0	0.001168	0	0
SMAD9	4093	broad.mit.edu	37	13	37427707	37427707	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr13:37427707G>A	uc001uvw.2	-	6	1452	c.1109C>T	c.(1108-1110)CCA>CTA	p.P370L	SMAD9_uc001uvx.2_Missense_Mutation_p.P333L|SMAD9_uc010tep.1_Missense_Mutation_p.P163L	NM_001127217	NP_001120689	O15198	SMAD9_HUMAN	SMAD family member 9 isoform a	370	MH2.				BMP signaling pathway|transforming growth factor beta receptor signaling pathway	cytosol|transcription factor complex	sequence-specific DNA binding transcription factor activity|transforming growth factor beta receptor, pathway-specific cytoplasmic mediator activity				0		Breast(139;0.0615)|Lung SC(185;0.0743)|Prostate(109;0.184)		all cancers(112;3.38e-07)|Epithelial(112;1.93e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00804)|BRCA - Breast invasive adenocarcinoma(63;0.0129)|GBM - Glioblastoma multiforme(144;0.026)		GACGGTAGCTGGGTGGAAGCC	0.572													7	16					0	0	0.003080	0	0
TRPC4	7223	broad.mit.edu	37	13	38237762	38237762	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr13:38237762G>A	uc001uws.2	-	6	1714	c.1479C>T	c.(1477-1479)ATC>ATT	p.I493I	TRPC4_uc010abv.2_Silent_p.I73I|TRPC4_uc001uwt.2_Silent_p.I493I|TRPC4_uc010tey.1_Silent_p.I493I|TRPC4_uc010abw.2_Silent_p.I320I|TRPC4_uc010abx.2_Silent_p.I493I|TRPC4_uc010aby.2_Silent_p.I493I	NM_016179	NP_057263	Q9UBN4	TRPC4_HUMAN	transient receptor potential cation channel,	493	Cytoplasmic (Potential).				axon guidance|calcium ion import	basolateral plasma membrane|calcium channel complex|cell surface|cortical cytoskeleton	beta-catenin binding|cadherin binding|store-operated calcium channel activity			ovary(3)|skin(2)|breast(1)	6				all cancers(112;1.92e-08)|Epithelial(112;5.04e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000677)|GBM - Glioblastoma multiforme(144;0.00623)|BRCA - Breast invasive adenocarcinoma(63;0.0126)		TAAACAGTGAGATCAGACGCA	0.448													18	9					0	0	0.006122	0	0
FREM2	341640	broad.mit.edu	37	13	39343905	39343905	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr13:39343905C>T	uc001uwv.2	+	4	5910	c.5601C>T	c.(5599-5601)TTC>TTT	p.F1867F	FREM2_uc001uww.2_5'UTR	NM_207361	NP_997244	Q5SZK8	FREM2_HUMAN	FRAS1-related extracellular matrix protein 2	1867	Extracellular (Potential).				cell communication|homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(7)|pancreas(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	11		Lung NSC(96;1.04e-07)|Prostate(109;0.00384)|Breast(139;0.00396)|Lung SC(185;0.0565)|Hepatocellular(188;0.114)		all cancers(112;3.32e-07)|Epithelial(112;1.66e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00154)|BRCA - Breast invasive adenocarcinoma(63;0.00631)|GBM - Glioblastoma multiforme(144;0.0312)		CCTTGGAATTCCCCACAGTCG	0.532													18	26					0	0	0.008871	0	0
C13orf23	80209	broad.mit.edu	37	13	39587218	39587218	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr13:39587218G>A	uc001uwy.2	-	11	3044	c.2171C>T	c.(2170-2172)TCA>TTA	p.S724L	C13orf23_uc001uwz.2_Missense_Mutation_p.S702L	NM_025138	NP_079414	Q86XN7	CM023_HUMAN	hypothetical protein LOC80209 isoform 1	724	Ser-rich.									ovary(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)	5		Lung NSC(96;6.01e-07)|Breast(139;0.00394)|Prostate(109;0.00676)|Lung SC(185;0.0548)|Hepatocellular(188;0.114)		all cancers(112;3.7e-08)|Epithelial(112;4.28e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.00114)|BRCA - Breast invasive adenocarcinoma(63;0.00366)|GBM - Glioblastoma multiforme(144;0.0146)		GGCTATTAATGACCCTGGGAG	0.488													6	74					0	0	0.001168	0	0
COG6	57511	broad.mit.edu	37	13	40301618	40301618	+	Missense_Mutation	SNP	C	T	T	rs144843064	byFrequency	TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr13:40301618C>T	uc001uxh.2	+	18	1859	c.1759C>T	c.(1759-1761)CGT>TGT	p.R587C	COG6_uc001uxi.2_Missense_Mutation_p.R535C|COG6_uc010acb.2_Missense_Mutation_p.R587C	NM_020751	NP_065802	Q9Y2V7	COG6_HUMAN	component of oligomeric golgi complex 6 isoform	587					protein transport	Golgi membrane|Golgi transport complex				kidney(1)|skin(1)	2		Lung NSC(96;0.000124)|Breast(139;0.0199)|Prostate(109;0.0233)|Lung SC(185;0.0367)		all cancers(112;6.03e-09)|Epithelial(112;7e-07)|OV - Ovarian serous cystadenocarcinoma(117;0.00015)|BRCA - Breast invasive adenocarcinoma(63;0.00438)|GBM - Glioblastoma multiforme(144;0.0168)		TCAGTTTGATCGTTATCTGTC	0.328													8	80					0	0	0.003080	0	0
KIAA0564	23078	broad.mit.edu	37	13	42259190	42259190	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr13:42259190G>A	uc001uyj.2	-	35	4390	c.4320C>T	c.(4318-4320)TAC>TAT	p.Y1440Y		NM_015058	NP_055873	A3KMH1	K0564_HUMAN	hypothetical protein LOC23078 isoform a	1440						extracellular region	ATP binding|ATPase activity			ovary(3)|upper_aerodigestive_tract(1)|kidney(1)|skin(1)	6		Lung NSC(96;4.61e-06)|Prostate(109;0.0167)|Lung SC(185;0.0262)|Breast(139;0.0854)|Hepatocellular(98;0.114)		OV - Ovarian serous cystadenocarcinoma(117;0.000368)|GBM - Glioblastoma multiforme(144;0.0033)|BRCA - Breast invasive adenocarcinoma(63;0.0969)		TACCTTTTGGGTAGATATCTT	0.363													17	18					0	0	0.008871	0	0
KIAA0564	23078	broad.mit.edu	37	13	42407593	42407593	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr13:42407593G>A	uc001uyj.2	-	13	1570	c.1500C>T	c.(1498-1500)CCC>CCT	p.P500P	KIAA0564_uc001uyk.2_Silent_p.P500P	NM_015058	NP_055873	A3KMH1	K0564_HUMAN	hypothetical protein LOC23078 isoform a	500						extracellular region	ATP binding|ATPase activity			ovary(3)|upper_aerodigestive_tract(1)|kidney(1)|skin(1)	6		Lung NSC(96;4.61e-06)|Prostate(109;0.0167)|Lung SC(185;0.0262)|Breast(139;0.0854)|Hepatocellular(98;0.114)		OV - Ovarian serous cystadenocarcinoma(117;0.000368)|GBM - Glioblastoma multiforme(144;0.0033)|BRCA - Breast invasive adenocarcinoma(63;0.0969)		CATTCACAAGGGGTGAGGACC	0.542													5	25					0	0	0.000602	0	0
EPSTI1	94240	broad.mit.edu	37	13	43566154	43566154	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr13:43566154C>T	uc001uyw.1	-	1	224	c.148G>A	c.(148-150)GGC>AGC	p.G50S	EPSTI1_uc001uyx.1_Missense_Mutation_p.G50S	NM_001002264	NP_001002264	Q96J88	ESIP1_HUMAN	epithelial stromal interaction 1 isoform 1	50										ovary(1)	1		Lung NSC(96;3.6e-06)|Breast(139;0.00869)|Prostate(109;0.0181)|Lung SC(185;0.0262)|Hepatocellular(98;0.114)		GBM - Glioblastoma multiforme(144;0.000528)|BRCA - Breast invasive adenocarcinoma(63;0.0858)		CGCGAAGGGCCCTTAGGGGCT	0.672													13	75					0	0	0.006122	0	0
HTR2A	3356	broad.mit.edu	37	13	47409563	47409563	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr13:47409563C>T	uc001vbq.2	-	3	959	c.825G>A	c.(823-825)CGG>CGA	p.R275R	HTR2A_uc001vbr.2_Silent_p.R175R|HTR2A_uc010acr.2_Silent_p.R275R	NM_000621	NP_000612	P28223	5HT2A_HUMAN	5-hydroxytryptamine receptor 2A isoform 1	275	Cytoplasmic (By similarity).				ERK1 and ERK2 cascade|phosphatidylinositol 3-kinase cascade|phosphatidylinositol biosynthetic process|release of sequestered calcium ion into cytosol|response to drug|synaptic transmission	integral to plasma membrane	1-(4-iodo-2,5-dimethoxyphenyl)propan-2-amine binding|drug binding|phosphatidylinositol phospholipase C activity|serotonin binding|serotonin receptor activity			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		all_lung(13;7.2e-10)|Lung NSC(96;3.77e-07)|Breast(56;2.06e-05)|Prostate(109;0.00116)|Hepatocellular(98;0.0207)|Lung SC(185;0.0262)|Myeloproliferative disorder(33;0.0333)		GBM - Glioblastoma multiforme(144;4.67e-05)|COAD - Colon adenocarcinoma(199;0.224)	Aripiprazole(DB01238)|Chlorpromazine(DB00477)|Chlorprothixene(DB01239)|Cisapride(DB00604)|Clomipramine(DB01242)|Clozapine(DB00363)|Cyclobenzaprine(DB00924)|Cyproheptadine(DB00434)|Dihydroergotamine(DB00320)|Donepezil(DB00843)|Epinastine(DB00751)|Ergotamine(DB00696)|Fluvoxamine(DB00176)|Mesoridazine(DB00933)|Methysergide(DB00247)|Mianserin(DB06148)|Minaprine(DB00805)|Mirtazapine(DB00370)|Nefazodone(DB01149)|Olanzapine(DB00334)|Paliperidone(DB01267)|Paroxetine(DB00715)|Prochlorperazine(DB00433)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Quetiapine(DB01224)|Risperidone(DB00734)|Sertindole(DB06144)|Thiethylperazine(DB00372)|Thioridazine(DB00679)|Tranylcypromine(DB00752)|Trazodone(DB00656)|Venlafaxine(DB00285)|Ziprasidone(DB00246)	CTAATTTGGCCCGTGTGCCAA	0.458													15	21					0	0	0.004007	0	0
HTR2A	3356	broad.mit.edu	37	13	47409694	47409694	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr13:47409694C>T	uc001vbq.2	-	3	828	c.694G>A	c.(694-696)GAT>AAT	p.D232N	HTR2A_uc001vbr.2_Missense_Mutation_p.D132N|HTR2A_uc010acr.2_Missense_Mutation_p.D232N	NM_000621	NP_000612	P28223	5HT2A_HUMAN	5-hydroxytryptamine receptor 2A isoform 1	232	Extracellular (By similarity).				ERK1 and ERK2 cascade|phosphatidylinositol 3-kinase cascade|phosphatidylinositol biosynthetic process|release of sequestered calcium ion into cytosol|response to drug|synaptic transmission	integral to plasma membrane	1-(4-iodo-2,5-dimethoxyphenyl)propan-2-amine binding|drug binding|phosphatidylinositol phospholipase C activity|serotonin binding|serotonin receptor activity			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		all_lung(13;7.2e-10)|Lung NSC(96;3.77e-07)|Breast(56;2.06e-05)|Prostate(109;0.00116)|Hepatocellular(98;0.0207)|Lung SC(185;0.0262)|Myeloproliferative disorder(33;0.0333)		GBM - Glioblastoma multiforme(144;4.67e-05)|COAD - Colon adenocarcinoma(199;0.224)	Aripiprazole(DB01238)|Chlorpromazine(DB00477)|Chlorprothixene(DB01239)|Cisapride(DB00604)|Clomipramine(DB01242)|Clozapine(DB00363)|Cyclobenzaprine(DB00924)|Cyproheptadine(DB00434)|Dihydroergotamine(DB00320)|Donepezil(DB00843)|Epinastine(DB00751)|Ergotamine(DB00696)|Fluvoxamine(DB00176)|Mesoridazine(DB00933)|Methysergide(DB00247)|Mianserin(DB06148)|Minaprine(DB00805)|Mirtazapine(DB00370)|Nefazodone(DB01149)|Olanzapine(DB00334)|Paliperidone(DB01267)|Paroxetine(DB00715)|Prochlorperazine(DB00433)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Quetiapine(DB01224)|Risperidone(DB00734)|Sertindole(DB06144)|Thiethylperazine(DB00372)|Thioridazine(DB00679)|Tranylcypromine(DB00752)|Trazodone(DB00656)|Venlafaxine(DB00285)|Ziprasidone(DB00246)	ACAAAGTTATCATCGGCGAGT	0.433													13	22					0	0	0.003163	0	0
CAB39L	81617	broad.mit.edu	37	13	49951247	49951247	+	Missense_Mutation	SNP	T	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr13:49951247T>A	uc001vcw.2	-	3	630	c.132A>T	c.(130-132)AAA>AAT	p.K44N	CAB39L_uc001vcx.2_Missense_Mutation_p.K44N|CAB39L_uc010adf.2_Missense_Mutation_p.K41N	NM_030925	NP_112187	Q9H9S4	CB39L_HUMAN	calcium binding protein 39-like	44					cell cycle arrest|insulin receptor signaling pathway|regulation of fatty acid oxidation	cytosol	protein binding				0		Lung NSC(96;2.11e-05)|Breast(56;0.00017)|Prostate(109;0.00314)|Hepatocellular(98;0.0207)|Myeloproliferative disorder(33;0.163)|Lung SC(185;0.187)|all_neural(104;0.19)	KIRC - Kidney renal clear cell carcinoma(9;0.206)	GBM - Glioblastoma multiforme(99;3.66e-09)|COAD - Colon adenocarcinoma(199;0.226)		CTTGCAGTGATTTAGACACTT	0.393													6	31					0	0	0.001984	0	0
RCBTB1	55213	broad.mit.edu	37	13	50140794	50140794	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr13:50140794G>A	uc001vde.1	-	4	498	c.237C>T	c.(235-237)CTC>CTT	p.L79L		NM_018191	NP_060661	Q8NDN9	RCBT1_HUMAN	regulator of chromosome condensation (RCC1) and	79	RCC1 1.				cell cycle|chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus				ovary(1)	1		Lung NSC(96;2.1e-05)|Breast(56;0.00015)|Prostate(109;0.00314)|Hepatocellular(98;0.0207)|Myeloproliferative disorder(33;0.163)|Lung SC(185;0.187)|all_neural(104;0.19)	KIRC - Kidney renal clear cell carcinoma(9;0.206)	GBM - Glioblastoma multiforme(99;4.7e-09)		TCCCGTAACTGAGGCTTTTAA	0.418													9	36					0	0	0.008291	0	0
PCDH17	27253	broad.mit.edu	37	13	58299120	58299120	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr13:58299120G>A	uc001vhq.1	+	4	4064	c.3172G>A	c.(3172-3174)GAA>AAA	p.E1058K	PCDH17_uc010aec.1_Missense_Mutation_p.E1057K|PCDH17_uc001vhr.1_Missense_Mutation_p.E147K	NM_001040429	NP_001035519	O14917	PCD17_HUMAN	protocadherin 17 precursor	1058	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			ovary(3)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	7		Lung NSC(96;0.027)|Prostate(109;0.0453)|Breast(118;0.128)|Hepatocellular(98;0.132)		GBM - Glioblastoma multiforme(99;1.06e-05)		GGATGGCTGTGAAGCAAAACC	0.552													4	34					0	0	0.009096	0	0
KLHL1	57626	broad.mit.edu	37	13	70535503	70535503	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr13:70535503C>T	uc001vip.2	-	3	1548	c.754G>A	c.(754-756)GAG>AAG	p.E252K	KLHL1_uc010thm.1_Missense_Mutation_p.E191K	NM_020866	NP_065917	Q9NR64	KLHL1_HUMAN	kelch-like 1 protein	252	BTB.				actin cytoskeleton organization	cytoplasm|cytoskeleton	actin binding				0		Breast(118;0.000162)		COAD - Colon adenocarcinoma(199;0.000193)|GBM - Glioblastoma multiforme(99;0.000211)		ATTTTGATCTCCTCTTGCTTG	0.408													12	18					0	0	0.002450	0	0
DACH1	1602	broad.mit.edu	37	13	72063191	72063191	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr13:72063191G>A	uc010thn.1	-	8	2083	c.1660C>T	c.(1660-1662)CCA>TCA	p.P554S	DACH1_uc010tho.1_Missense_Mutation_p.P406S|DACH1_uc010thp.1_Missense_Mutation_p.P352S	NM_080759	NP_542937	Q9UI36	DACH1_HUMAN	dachshund homolog 1 isoform a	606					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus	DNA binding|nucleotide binding|protein binding			breast(1)	1		Acute lymphoblastic leukemia(28;0.0503)|Breast(118;0.198)		GBM - Glioblastoma multiforme(99;0.00032)		AAAGGAGATGGAAAACCTGGA	0.468													58	80					0	0	0.014410	0	0
PIBF1	10464	broad.mit.edu	37	13	73401869	73401869	+	Splice_Site	SNP	A	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr13:73401869A>G	uc001vjc.2	+	8	1221	c.916_splice	c.e8-2	p.V306_splice	PIBF1_uc001vja.1_Splice_Site_p.V306_splice|PIBF1_uc010aeo.1_Splice_Site|PIBF1_uc001vjb.2_Splice_Site_p.V306_splice|PIBF1_uc010aep.2_Intron	NM_006346	NP_006337	Q8WXW3	PIBF1_HUMAN	progesterone-induced blocking factor 1							centrosome				ovary(1)|breast(1)	2		Prostate(6;0.00191)|Breast(118;0.0736)|Acute lymphoblastic leukemia(28;0.0865)		GBM - Glioblastoma multiforme(99;0.000664)		ACATGTATGTAGGTAGTCACC	0.363													12	16					0	0	0.001855	0	0
UCHL3	7347	broad.mit.edu	37	13	76169099	76169099	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr13:76169099C>T	uc001vjq.2	+	7	553	c.523C>T	c.(523-525)CAT>TAT	p.H175Y	UCHL3_uc001vjr.2_Missense_Mutation_p.H139Y	NM_006002	NP_005993	P15374	UCHL3_HUMAN	ubiquitin carboxyl-terminal esterase L3	175					ubiquitin-dependent protein catabolic process	cytoplasm	cysteine-type peptidase activity|ubiquitin binding|ubiquitin thiolesterase activity				0				GBM - Glioblastoma multiforme(99;0.0125)		TGCATTAGTTCATGTAGATGG	0.338													81	131					0	0	0.014410	0	0
LMO7	4008	broad.mit.edu	37	13	76381956	76381956	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr13:76381956G>A	uc001vjv.2	+	7	1598	c.838G>A	c.(838-840)GAA>AAA	p.E280K	LMO7_uc010thv.1_Intron|LMO7_uc001vjt.1_Intron|LMO7_uc010thw.1_Intron|LMO7_uc001vjw.1_Missense_Mutation_p.E186K	NM_015842	NP_056667	Q8WWI1	LMO7_HUMAN	LIM domain only 7 isoform 2	565						cytoplasm|nucleus|ubiquitin ligase complex	ubiquitin-protein ligase activity|zinc ion binding			large_intestine(2)|ovary(1)|prostate(1)|skin(1)	5		Breast(118;0.0992)		GBM - Glioblastoma multiforme(99;0.0109)		TCCGGATTTGGAAAAAGATGA	0.438													9	71					0	0	0.006214	0	0
LMO7	4008	broad.mit.edu	37	13	76397934	76397934	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr13:76397934C>T	uc001vjv.2	+	12	2935	c.2175C>T	c.(2173-2175)TCC>TCT	p.S725S	LMO7_uc010thv.1_Silent_p.S676S|LMO7_uc001vjt.1_Silent_p.S624S|LMO7_uc010thw.1_Silent_p.S575S|LMO7_uc001vjw.1_Silent_p.S631S	NM_015842	NP_056667	Q8WWI1	LMO7_HUMAN	LIM domain only 7 isoform 2	1010						cytoplasm|nucleus|ubiquitin ligase complex	ubiquitin-protein ligase activity|zinc ion binding			large_intestine(2)|ovary(1)|prostate(1)|skin(1)	5		Breast(118;0.0992)		GBM - Glioblastoma multiforme(99;0.0109)		CATTGTCTTCCACATCTGGTC	0.463													13	18					0	0	0.013537	0	0
LMO7	4008	broad.mit.edu	37	13	76407271	76407271	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr13:76407271C>T	uc001vjv.2	+	13	3095	c.2335C>T	c.(2335-2337)CCT>TCT	p.P779S	LMO7_uc010thv.1_Missense_Mutation_p.P730S|LMO7_uc001vjt.1_Missense_Mutation_p.P678S|LMO7_uc010thw.1_Missense_Mutation_p.P629S|LMO7_uc001vjw.1_Missense_Mutation_p.P685S	NM_015842	NP_056667	Q8WWI1	LMO7_HUMAN	LIM domain only 7 isoform 2	1064	PDZ.					cytoplasm|nucleus|ubiquitin ligase complex	ubiquitin-protein ligase activity|zinc ion binding			large_intestine(2)|ovary(1)|prostate(1)|skin(1)	5		Breast(118;0.0992)		GBM - Glioblastoma multiforme(99;0.0109)		ATGGGATATTCCTGGGATCTT	0.403													4	25					0	0	0.001168	0	0
GPC5	2262	broad.mit.edu	37	13	92101047	92101047	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr13:92101047C>T	uc010tif.1	+	2	562	c.196C>T	c.(196-198)CCT>TCT	p.P66S		NM_004466	NP_004457	P78333	GPC5_HUMAN	glypican 5 precursor	66						anchored to membrane|extracellular space|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding			ovary(2)|skin(2)|upper_aerodigestive_tract(1)	5	all_cancers(3;1.43e-07)|all_neural(89;0.0804)|Medulloblastoma(90;0.163)	Lung NSC(4;0.00454)				ATCCAAAAAGCCTACATGTTG	0.393													18	23					0	0	0.010504	0	0
GPC5	2262	broad.mit.edu	37	13	93518546	93518546	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr13:93518546G>A	uc010tif.1	+	8	1939	c.1573G>A	c.(1573-1575)GAT>AAT	p.D525N		NM_004466	NP_004457	P78333	GPC5_HUMAN	glypican 5 precursor	525						anchored to membrane|extracellular space|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding			ovary(2)|skin(2)|upper_aerodigestive_tract(1)	5	all_cancers(3;1.43e-07)|all_neural(89;0.0804)|Medulloblastoma(90;0.163)	Lung NSC(4;0.00454)				GATGCCAGATGATATGAACTT	0.433													14	20					0	0	0.004007	0	0
ABCC4	10257	broad.mit.edu	37	13	95830019	95830019	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr13:95830019G>A	uc001vmd.3	-	13	1788	c.1669C>T	c.(1669-1671)CTC>TTC	p.L557F	ABCC4_uc010afk.2_Missense_Mutation_p.L557F|ABCC4_uc001vme.2_Missense_Mutation_p.L557F|ABCC4_uc010tih.1_Missense_Mutation_p.L482F|ABCC4_uc001vmf.2_Missense_Mutation_p.L514F|ABCC4_uc010afl.1_Missense_Mutation_p.L514F|ABCC4_uc010afm.1_Missense_Mutation_p.L570F	NM_005845	NP_005836	O15439	MRP4_HUMAN	ATP-binding cassette, sub-family C, member 4	557	ABC transporter 1.				platelet activation|platelet degranulation	integral to membrane|membrane fraction|plasma membrane|platelet dense granule membrane	15-hydroxyprostaglandin dehydrogenase (NAD+) activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|chloride channel activity			central_nervous_system(3)|skin(1)	4	all_neural(89;0.0878)|Medulloblastoma(90;0.163)				Cefazolin(DB01327)	TCGTCCAGGAGATAGATGTCA	0.433													16	15					0	0	0.007413	0	0
ABCC4	10257	broad.mit.edu	37	13	95861831	95861831	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr13:95861831G>A	uc001vmd.3	-	6	761	c.642C>T	c.(640-642)TTC>TTT	p.F214F	ABCC4_uc010afk.2_Silent_p.F214F|ABCC4_uc001vme.2_Silent_p.F214F|ABCC4_uc010tih.1_Silent_p.F139F|ABCC4_uc001vmf.2_Silent_p.F171F|ABCC4_uc010afl.1_Silent_p.F171F|ABCC4_uc010afm.1_Silent_p.F227F	NM_005845	NP_005836	O15439	MRP4_HUMAN	ATP-binding cassette, sub-family C, member 4	214	ABC transmembrane type-1 1.|Helical; (Potential).				platelet activation|platelet degranulation	integral to membrane|membrane fraction|plasma membrane|platelet dense granule membrane	15-hydroxyprostaglandin dehydrogenase (NAD+) activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|chloride channel activity			central_nervous_system(3)|skin(1)	4	all_neural(89;0.0878)|Medulloblastoma(90;0.163)				Cefazolin(DB01327)	CTGCCCACAGGAAGTGTAAGA	0.473													4	21					0	0	0.000602	0	0
RNF113B	140432	broad.mit.edu	37	13	98828564	98828564	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr13:98828564C>T	uc001vnk.2	-	1	958	c.927G>A	c.(925-927)GCG>GCA	p.A309A	FARP1_uc001vnh.2_Intron|FARP1_uc001vni.2_Intron|FARP1_uc001vnj.2_Intron	NM_178861	NP_849192	Q8IZP6	R113B_HUMAN	ring finger protein 113B	309							nucleic acid binding|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3	all_neural(89;0.101)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)		BRCA - Breast invasive adenocarcinoma(86;0.13)			TTTGCAGTTTCGCCATCAGTT	0.572													26	46					0	0	0.008361	0	0
GPR183	1880	broad.mit.edu	37	13	99947367	99947367	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr13:99947367C>T	uc001vog.2	-	2	1207	c.1033G>A	c.(1033-1035)GAA>AAA	p.E345K	UBAC2_uc001voa.3_Intron|UBAC2_uc010tiu.1_Intron|UBAC2_uc001vob.3_Intron|UBAC2_uc010tiv.1_Intron|UBAC2_uc001vod.2_Intron|UBAC2_uc001voc.2_Intron|UBAC2_uc010tiw.1_Intron	NM_004951	NP_004942	P32249	GP183_HUMAN	EBV-induced G protein-coupled receptor 2	345	Cytoplasmic (Potential).				humoral immune response|mature B cell differentiation involved in immune response	integral to plasma membrane	purinergic nucleotide receptor activity, G-protein coupled				0						TCTGTCATTTCACGTGAATTT	0.378													13	35					0	0	0.002450	0	0
NALCN	259232	broad.mit.edu	37	13	101712206	101712206	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr13:101712206C>T	uc001vox.1	-	42	5058	c.4869G>A	c.(4867-4869)ACG>ACA	p.T1623T		NM_052867	NP_443099	Q8IZF0	NALCN_HUMAN	voltage gated channel like 1	1623	Cytoplasmic (Potential).					integral to membrane	sodium channel activity|voltage-gated ion channel activity			ovary(8)|breast(4)|skin(2)|pancreas(1)|central_nervous_system(1)	16	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					TGTTGGCATTCGTGTCCTCAC	0.542													28	33					0	0	0.008361	0	0
NALCN	259232	broad.mit.edu	37	13	101717769	101717769	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr13:101717769G>A	uc001vox.1	-	40	4780	c.4591C>T	c.(4591-4593)CAT>TAT	p.H1531Y		NM_052867	NP_443099	Q8IZF0	NALCN_HUMAN	voltage gated channel like 1	1531	Cytoplasmic (Potential).					integral to membrane	sodium channel activity|voltage-gated ion channel activity			ovary(8)|breast(4)|skin(2)|pancreas(1)|central_nervous_system(1)	16	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					AGGACATCATGGAAGGTGACG	0.557													37	47					0	0	0.006999	0	0
NALCN	259232	broad.mit.edu	37	13	101742293	101742293	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr13:101742293G>A	uc001vox.1	-	29	3483	c.3294C>T	c.(3292-3294)TTC>TTT	p.F1098F		NM_052867	NP_443099	Q8IZF0	NALCN_HUMAN	voltage gated channel like 1	1098	Extracellular (Potential).					integral to membrane	sodium channel activity|voltage-gated ion channel activity			ovary(8)|breast(4)|skin(2)|pancreas(1)|central_nervous_system(1)	16	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					CCACATTGTCGAAATTAAAGT	0.463													29	166					0	0	0.010818	0	0
DAOA	267012	broad.mit.edu	37	13	106142276	106142276	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr13:106142276G>A	uc001vqb.2	+	4	582	c.308G>A	c.(307-309)GGA>GAA	p.G103E	DAOA_uc010tjf.1_Missense_Mutation_p.G32E|DAOA_uc001vpz.2_RNA|DAOA_uc010agd.2_RNA|DAOA_uc010tjg.1_Missense_Mutation_p.G75E|DAOA_uc001vqc.2_RNA|DAOA_uc001vqe.2_RNA	NM_172370	NP_758958	P59103	DAOA_HUMAN	D-amino acid oxidase activator isoform 1	103						Golgi apparatus					0	Lung NSC(43;0.01)|all_neural(89;0.0741)|Lung SC(71;0.14)|Medulloblastoma(90;0.169)					agccatgttggaaaagtcttc	0													4	25					0	0	0.009096	0	0
MYO16	23026	broad.mit.edu	37	13	109707925	109707925	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr13:109707925T>C	uc001vqt.1	+	27	3377	c.3251T>C	c.(3250-3252)TTC>TCC	p.F1084S	MYO16_uc010agk.1_Missense_Mutation_p.F1106S|MYO16_uc001vqu.1_Missense_Mutation_p.F884S|MYO16_uc010tjh.1_Missense_Mutation_p.F596S	NM_015011	NP_055826	Q9Y6X6	MYO16_HUMAN	myosin heavy chain Myr 8	1084	Myosin head-like 2.				cerebellum development|negative regulation of cell proliferation|negative regulation of S phase of mitotic cell cycle	myosin complex|nucleoplasm|perinuclear region of cytoplasm|plasma membrane	actin filament binding|ATP binding|motor activity			ovary(6)|large_intestine(1)|kidney(1)|breast(1)|central_nervous_system(1)	10	all_lung(23;0.000332)|all_neural(89;0.00294)|Medulloblastoma(90;0.00596)|Lung NSC(43;0.00751)|Lung SC(71;0.104)		BRCA - Breast invasive adenocarcinoma(86;0.19)|all cancers(43;0.201)			CGCCTTTCCTTCTCGGATTTC	0.433													13	83					0	0	0.004990	0	0
IRS2	8660	broad.mit.edu	37	13	110436664	110436665	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr13:110436664_110436665GG>AA	uc001vqv.2	-	1	2250_2251	c.1736_1737CC>TT	c.(1735-1737)ACC>ATT	p.T579I		NM_003749	NP_003740	Q9Y4H2	IRS2_HUMAN	insulin receptor substrate 2	579					fibroblast growth factor receptor signaling pathway|glucose metabolic process|insulin receptor signaling pathway|lipid homeostasis|negative regulation of B cell apoptosis|negative regulation of kinase activity|negative regulation of plasma membrane long-chain fatty acid transport|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|positive regulation of B cell proliferation|positive regulation of fatty acid beta-oxidation|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of insulin secretion|response to glucose stimulus	cytosol|plasma membrane	insulin receptor binding|signal transducer activity			large_intestine(2)|lung(2)|upper_aerodigestive_tract(1)|skin(1)|ovary(1)|kidney(1)	8	all_cancers(4;7.57e-15)|all_epithelial(4;5.91e-09)|all_lung(23;7.64e-07)|Lung NSC(43;0.000183)|Colorectal(4;0.00159)|all_neural(89;0.00294)|Medulloblastoma(90;0.00596)|Lung SC(71;0.0155)	Breast(118;0.159)	all cancers(43;0.00815)|BRCA - Breast invasive adenocarcinoma(86;0.11)|Epithelial(84;0.127)|GBM - Glioblastoma multiforme(44;0.147)			GGGCTGGCGTGGTCAGGGAGTA	0.728													13	11					0	0	0.004672	0	0
COL4A1	1282	broad.mit.edu	37	13	110827673	110827673	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr13:110827673G>A	uc001vqw.3	-	37	3212	c.3090C>T	c.(3088-3090)ATC>ATT	p.I1030I	COL4A1_uc010agl.2_Intron	NM_001845	NP_001836	P02462	CO4A1_HUMAN	alpha 1 type IV collagen preproprotein	1030	Triple-helical region.				angiogenesis|axon guidance		extracellular matrix structural constituent|platelet-derived growth factor binding			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6	all_cancers(4;9.8e-13)|all_epithelial(4;9.66e-08)|all_lung(23;3.75e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00178)|all_neural(89;0.00459)|Medulloblastoma(90;0.00596)|Lung SC(71;0.0604)	Breast(118;0.2)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.145)			GTGGGCCAGGGATGCCAGGCA	0.512													20	26					0	0	0.008871	0	0
C13orf16	121793	broad.mit.edu	37	13	111980602	111980603	+	Nonsense_Mutation	DNP	GC	AA	AA			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr13:111980602_111980603GC>AA	uc001vsa.2	+	3	260_261	c.131_132GC>AA	c.(130-132)TGC>TAA	p.C44*		NM_152324	NP_689537	Q8N6K0	CM016_HUMAN	hypothetical protein LOC121793	44	Extracellular (Potential).					integral to membrane					0	all_lung(23;3.96e-05)|Lung NSC(43;0.00156)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Medulloblastoma(90;0.163)		all cancers(43;0.113)|GBM - Glioblastoma multiforme(44;0.174)|BRCA - Breast invasive adenocarcinoma(86;0.188)			CTCGGGTGCTGCTTCTACGAAG	0.574													25	29					0	0	0.004672	0	0
C13orf35	400165	broad.mit.edu	37	13	113333696	113333696	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr13:113333696G>A	uc001vsh.1	+	2	761	c.3G>A	c.(1-3)ATG>ATA	p.M1I		NM_207440	NP_997323	Q6ZP68	CM035_HUMAN	hypothetical protein LOC400165	1										ovary(1)	1	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)		all cancers(43;0.201)			TTGTTAGGATGAACTCACCAG	0.552													7	35					0	0	0.001984	0	0
CUL4A	8451	broad.mit.edu	37	13	113899540	113899540	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr13:113899540C>T	uc010tjy.1	+	15	1530	c.1519C>T	c.(1519-1521)CAT>TAT	p.H507Y	CUL4A_uc010tjx.1_Missense_Mutation_p.H407Y|CUL4A_uc010agu.2_Missense_Mutation_p.H368Y|CUL4A_uc010tjz.1_Missense_Mutation_p.H186Y	NM_001008895	NP_001008895	Q13619	CUL4A_HUMAN	cullin 4A isoform 1	507					cell cycle arrest|DNA repair|G1/S transition of mitotic cell cycle|induction of apoptosis by intracellular signals|interspecies interaction between organisms|negative regulation of cell proliferation|ubiquitin-dependent protein catabolic process	Cul4A-RING ubiquitin ligase complex	ubiquitin protein ligase binding			central_nervous_system(2)|skin(1)	3	Lung NSC(43;0.0161)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.0482)|all_epithelial(44;0.0148)|all_lung(25;0.0271)|Lung NSC(25;0.0977)|Breast(118;0.188)	all cancers(43;0.112)			CATCATGGTTCATTTCAAGCA	0.373													11	29					0	0	0.002450	0	0
TFDP1	7027	broad.mit.edu	37	13	114288335	114288335	+	Missense_Mutation	SNP	G	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr13:114288335G>T	uc001vtw.2	+	7	817	c.605G>T	c.(604-606)TGT>TTT	p.C202F	TFDP1_uc010tkd.1_Missense_Mutation_p.C107F|TFDP1_uc010tke.1_Missense_Mutation_p.C107F|TFDP1_uc001vty.3_Missense_Mutation_p.C202F|TFDP1_uc001vtx.2_Missense_Mutation_p.C82F|TFDP1_uc010agx.2_Missense_Mutation_p.C202F	NM_007111	NP_009042	Q14186	TFDP1_HUMAN	transcription factor Dp-1	202					cell proliferation|G1 phase of mitotic cell cycle|G1/S transition of mitotic cell cycle|regulation of transcription from RNA polymerase II promoter	transcription factor complex	DNA binding|protein domain specific binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription factor binding			lung(4)|ovary(2)|skin(1)	7	Lung NSC(43;0.0113)|all_neural(89;0.0337)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.132)|all_epithelial(44;0.0731)|all_lung(25;0.149)|Breast(118;0.153)	all cancers(43;0.0576)			GCTCAGGAATGTCAGAACTTA	0.498										TSP Lung(29;0.18)			10	40					0.000673444	0.000718732	0.008291	1	0
ZNF828	283489	broad.mit.edu	37	13	115089630	115089630	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr13:115089630C>T	uc010ahb.2	+	3	642	c.313C>T	c.(313-315)CCT>TCT	p.P105S	ZNF828_uc001vuv.2_Missense_Mutation_p.P105S|ZNF828_uc010tko.1_Missense_Mutation_p.P105S	NM_001164144	NP_001157616	Q96JM3	ZN828_HUMAN	zinc finger protein 828	105	Pro-rich.				attachment of spindle microtubules to kinetochore involved in mitotic sister chromatid segregation|protein localization to kinetochore|protein localization to microtubule|sister chromatid biorientation	condensed chromosome kinetochore|cytoplasm|nucleus|spindle	nucleic acid binding|protein binding|zinc ion binding			ovary(2)	2	Lung NSC(43;0.00299)|all_neural(89;0.0337)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_epithelial(44;0.122)|all_lung(25;0.123)	BRCA - Breast invasive adenocarcinoma(86;0.104)	OV - Ovarian serous cystadenocarcinoma(48;0.193)|Epithelial(10;0.197)		AGAAACAGATCCTGTGAAAAG	0.398													15	21					0	0	0.004007	0	0
OR4M1	441670	broad.mit.edu	37	14	20248579	20248579	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:20248579C>T	uc010tku.1	+	1	98	c.98C>T	c.(97-99)TCC>TTC	p.S33F		NM_001005500	NP_001005500	Q8NGD0	OR4M1_HUMAN	olfactory receptor, family 4, subfamily M,	33	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		ATATTTCTATCCTTCTATTTG	0.413													22	246					0	0	0.012319	0	0
OR4M1	441670	broad.mit.edu	37	14	20248730	20248730	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:20248730A>G	uc010tku.1	+	1	249	c.249A>G	c.(247-249)ATA>ATG	p.I83M		NM_001005500	NP_001005500	Q8NGD0	OR4M1_HUMAN	olfactory receptor, family 4, subfamily M,	83	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		AAATGCTCATAGACTTCTTTG	0.448													49	371					0	0	0.014410	0	0
OR4N2	390429	broad.mit.edu	37	14	20296445	20296445	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:20296445C>T	uc010tkv.1	+	1	838	c.838C>T	c.(838-840)CCT>TCT	p.P280S		NM_001004723	NP_001004723	Q8NGD1	OR4N2_HUMAN	olfactory receptor, family 4, subfamily N,	280	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		AGTGATTTTTCCTTTGTTGAA	0.438													10	100					0	0	0.006214	0	0
OR4K2	390431	broad.mit.edu	37	14	20344752	20344752	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:20344752G>A	uc001vwh.1	+	1	326	c.326G>A	c.(325-327)GGA>GAA	p.G109E		NM_001005501	NP_001005501	Q8NGD2	OR4K2_HUMAN	olfactory receptor, family 4, subfamily K,	109	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		CTTTTCACTGGAACTGAGATC	0.438													16	175					0	0	0.004990	0	0
OR4K1	79544	broad.mit.edu	37	14	20404079	20404079	+	Missense_Mutation	SNP	T	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:20404079T>G	uc001vwj.1	+	1	254	c.254T>G	c.(253-255)TTT>TGT	p.F85C		NM_001004063	NP_001004063	Q8NGD4	OR4K1_HUMAN	olfactory receptor, family 4, subfamily K,	85	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00124)		CTTGTAGACTTTTTTATTGAG	0.418													15	164					0	0	0.006122	0	0
OR4K1	79544	broad.mit.edu	37	14	20404458	20404458	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:20404458C>T	uc001vwj.1	+	1	633	c.633C>T	c.(631-633)TTC>TTT	p.F211F		NM_001004063	NP_001004063	Q8NGD4	OR4K1_HUMAN	olfactory receptor, family 4, subfamily K,	211	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00124)		TGAGCTGTTTCCTGGCTTTAA	0.438													8	88					0	0	0.003080	0	0
OR4K1	79544	broad.mit.edu	37	14	20404640	20404640	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:20404640C>T	uc001vwj.1	+	1	815	c.815C>T	c.(814-816)TCT>TTT	p.S272F		NM_001004063	NP_001004063	Q8NGD4	OR4K1_HUMAN	olfactory receptor, family 4, subfamily K,	272	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00124)		AAATTTCTTTCTGTGTTCTAC	0.418													13	151					0	0	0.001855	0	0
OR4K14	122740	broad.mit.edu	37	14	20483095	20483095	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:20483095G>A	uc010tky.1	-	1	258	c.258C>T	c.(256-258)TTC>TTT	p.F86F		NM_001004712	NP_001004712	Q8NGD5	OR4KE_HUMAN	olfactory receptor, family 4, subfamily K,	86	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|large_intestine(1)	3	all_cancers(95;0.00108)		Epithelial(56;4.65e-07)|all cancers(55;2e-06)	GBM - Glioblastoma multiforme(265;0.00124)		GATCACTAAGGAAATCCCTGA	0.507													6	24					0	0	0.001984	0	0
OR4K13	390433	broad.mit.edu	37	14	20502813	20502813	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:20502813G>A	uc010tkz.1	-	1	105	c.105C>T	c.(103-105)TTC>TTT	p.F35F		NM_001004714	NP_001004714	Q8NH42	OR4KD_HUMAN	olfactory receptor, family 4, subfamily K,	35	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	all_cancers(95;0.00108)		Epithelial(56;4.65e-07)|all cancers(55;2.9e-06)	GBM - Glioblastoma multiforme(265;0.0064)		CAATCCCCACGAAGACCACAG	0.413													11	22					0	0	0.010729	0	0
OR4K13	390433	broad.mit.edu	37	14	20502859	20502859	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:20502859G>A	uc010tkz.1	-	1	59	c.59C>T	c.(58-60)TCT>TTT	p.S20F		NM_001004714	NP_001004714	Q8NH42	OR4KD_HUMAN	olfactory receptor, family 4, subfamily K,	20	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	all_cancers(95;0.00108)		Epithelial(56;4.65e-07)|all cancers(55;2.9e-06)	GBM - Glioblastoma multiforme(265;0.0064)		AAGATTTTGAGATTTGGAAAG	0.378													8	30					0	0	0.006214	0	0
OR4K17	390436	broad.mit.edu	37	14	20586527	20586527	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:20586527G>A	uc001vwo.1	+	1	962	c.962G>A	c.(961-963)AGA>AAA	p.R321K		NM_001004715	NP_001004715	Q8NGC6	OR4KH_HUMAN	olfactory receptor, family 4, subfamily K,	293	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)	3	all_cancers(95;0.00108)		Epithelial(56;7.58e-07)|all cancers(55;3.77e-06)	GBM - Glioblastoma multiforme(265;0.0144)		TATACTCTGAGAAACAAAGAA	0.323													4	30					0	0	0.009096	0	0
OR11G2	390439	broad.mit.edu	37	14	20666271	20666271	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:20666271C>T	uc010tlb.1	+	1	777	c.777C>T	c.(775-777)GTC>GTT	p.V259V		NM_001005503	NP_001005503	Q8NGC1	O11G2_HUMAN	olfactory receptor, family 11, subfamily G,	259	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00108)		Epithelial(56;9.76e-07)|all cancers(55;5.61e-06)	GBM - Glioblastoma multiforme(265;0.0144)		ATGCTCTGGTCGTGAGAGCTG	0.507													37	162					0	0	0.006999	0	0
TEP1	7011	broad.mit.edu	37	14	20864104	20864104	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:20864104G>A	uc001vxe.2	-	11	1704	c.1664C>T	c.(1663-1665)TCG>TTG	p.S555L	TEP1_uc010tlf.1_RNA|TEP1_uc010tlg.1_Missense_Mutation_p.S447L	NM_007110	NP_009041	Q99973	TEP1_HUMAN	telomerase-associated protein 1	555	TROVE.				telomere maintenance via recombination	chromosome, telomeric region|cytoplasm|nuclear matrix|soluble fraction|telomerase holoenzyme complex	ATP binding|RNA binding			ovary(5)	5	all_cancers(95;0.00123)	all_lung(585;0.235)	Epithelial(56;7.42e-08)|all cancers(55;6.46e-07)	GBM - Glioblastoma multiforme(265;0.028)|READ - Rectum adenocarcinoma(17;0.233)		GTGGATCACCGACTTCTAGAA	0.512													17	63					0	0	0.007413	0	0
RNASE11	122651	broad.mit.edu	37	14	21052174	21052174	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:21052174C>T	uc010ahv.2	-	2	645	c.460G>A	c.(460-462)GAA>AAA	p.E154K	RNASE11_uc010ahx.2_Missense_Mutation_p.E154K|RNASE11_uc010ahw.2_Missense_Mutation_p.E154K|RNASE11_uc001vxs.2_Missense_Mutation_p.E154K	NM_145250	NP_660293	Q8TAA1	RNS11_HUMAN	ribonuclease, RNase A family, 11 (non-active)	154						extracellular region	nucleic acid binding|pancreatic ribonuclease activity			ovary(3)	3	all_cancers(95;0.00238)	all_lung(585;0.235)	Epithelial(56;1.85e-06)|all cancers(55;1.46e-05)	GBM - Glioblastoma multiforme(265;0.0139)		ACTGTATTTTCCAGTTCTAGG	0.502													7	23					0	0	0.008291	0	0
EDDM3A	10876	broad.mit.edu	37	14	21215935	21215935	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:21215935C>T	uc001vyb.2	+	2	263	c.196C>T	c.(196-198)CAT>TAT	p.H66Y	EDDM3A_uc001vyc.2_Missense_Mutation_p.H66Y	NM_006683	NP_006674	Q14507	EP3A_HUMAN	human epididymis-specific 3 alpha precursor	66					sperm displacement	extracellular space					0						CAAGAGCTTTCATATGTTCAT	0.403													7	25					0	0	0.001984	0	0
RPGRIP1	57096	broad.mit.edu	37	14	21789447	21789447	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:21789447G>A	uc001wag.2	+	12	1497	c.1497G>A	c.(1495-1497)AAG>AAA	p.K499K	RPGRIP1_uc001wah.2_Silent_p.K141K|RPGRIP1_uc001wai.2_Silent_p.K141K|RPGRIP1_uc001waj.1_5'UTR|RPGRIP1_uc001wak.2_5'UTR|RPGRIP1_uc010aim.2_5'Flank|RPGRIP1_uc001wal.2_5'Flank|RPGRIP1_uc001wam.2_5'Flank	NM_020366	NP_065099	Q96KN7	RPGR1_HUMAN	retinitis pigmentosa GTPase regulator	499	Potential.				response to stimulus|visual perception	cilium				ovary(4)|breast(2)|pancreas(1)	7	all_cancers(95;0.0017)	all_cancers(140;0.0973)	Epithelial(56;6.24e-07)|all cancers(55;6.56e-06)	GBM - Glioblastoma multiforme(265;0.00888)		AAGAAGAAAAGAAACTGTCCC	0.403													13	18					0	0	0.001855	0	0
Unknown	0	broad.mit.edu	37	14	22090085	22090085	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:22090085C>T	uc001wbi.2	+	1	75	c.62C>T	c.(61-63)TCC>TTC	p.S21F						SubName: Full=Putative uncharacterized protein ENSP00000374929;																		CTCTATGTTTCCATGAAGATG	0.428													11	38					0	0	0.013537	0	0
OR4E2	26686	broad.mit.edu	37	14	22133687	22133687	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:22133687C>T	uc010tmd.1	+	1	391	c.391C>T	c.(391-393)CAC>TAC	p.H131Y		NM_001001912	NP_001001912	Q8NGC2	OR4E2_HUMAN	olfactory receptor, family 4, subfamily E,	131	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|skin(1)	4	all_cancers(95;0.00113)	Acute lymphoblastic leukemia(2;0.0279)		GBM - Glioblastoma multiforme(265;0.0137)		CACTCCACTCCACTACCCCAA	0.483													50	67					0	0	0.014410	0	0
REM2	161253	broad.mit.edu	37	14	23354209	23354209	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:23354209G>A	uc001whf.1	+	2	495	c.430G>A	c.(430-432)GAA>AAA	p.E144K	REM2_uc010tnd.1_Missense_Mutation_p.E136K	NM_173527	NP_775798	Q8IYK8	REM2_HUMAN	rad and gem related GTP binding protein 2	144					regulation of transcription, DNA-dependent|small GTPase mediated signal transduction	intracellular|plasma membrane	ATP binding|GTP binding|transcription factor binding			large_intestine(1)|central_nervous_system(1)	2	all_cancers(95;4.69e-05)			GBM - Glioblastoma multiforme(265;0.012)		CAGTGCTCACGAACCGGAGAA	0.612													17	18					0	0	0.004007	0	0
CDH24	64403	broad.mit.edu	37	14	23523522	23523522	+	Missense_Mutation	SNP	G	A	A	rs61976366		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:23523522G>A	uc001wil.2	-	6	1060	c.800C>T	c.(799-801)TCC>TTC	p.S267F	CDH24_uc010akf.2_Missense_Mutation_p.S267F|CDH24_uc001win.3_Missense_Mutation_p.S267F	NM_022478	NP_071923	Q86UP0	CAD24_HUMAN	cadherin-like 24 isoform 1	267	Extracellular (Potential).|Cadherin 3.				adherens junction organization|cell junction assembly|cell-cell adhesion|homophilic cell adhesion	cell-cell junction|cell-cell junction|integral to membrane	alpha-catenin binding|beta-catenin binding|calcium ion binding|delta-catenin binding			central_nervous_system(1)	1	all_cancers(95;3.3e-05)			GBM - Glioblastoma multiforme(265;0.00654)		CTCCACCACGGAGAACTGGTA	0.622													28	61					0	0	0.009535	0	0
MYH6	4624	broad.mit.edu	37	14	23854192	23854192	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:23854192G>A	uc001wjv.2	-	35	5289	c.5222C>T	c.(5221-5223)TCG>TTG	p.S1741L		NM_002471	NP_002462	P13533	MYH6_HUMAN	myosin heavy chain 6	1741	Potential.				adult heart development|atrial cardiac muscle tissue morphogenesis|cardiac muscle fiber development|in utero embryonic development|muscle filament sliding|regulation of ATPase activity|regulation of blood pressure|regulation of heart rate|regulation of the force of heart contraction|sarcomere organization|striated muscle contraction|ventricular cardiac muscle tissue morphogenesis|visceral muscle development	cytosol|focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|protein kinase binding|structural constituent of muscle			pancreas(2)|ovary(1)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00764)|READ - Rectum adenocarcinoma(4;0.0289)|Colorectal(4;0.0441)		CTCCACTTCCGACTGGAGCTG	0.517													11	30					0	0	0.008291	0	0
MYH6	4624	broad.mit.edu	37	14	23855677	23855677	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:23855677G>A	uc001wjv.2	-	33	4873	c.4806C>T	c.(4804-4806)TCC>TCT	p.S1602S		NM_002471	NP_002462	P13533	MYH6_HUMAN	myosin heavy chain 6	1602	Potential.				adult heart development|atrial cardiac muscle tissue morphogenesis|cardiac muscle fiber development|in utero embryonic development|muscle filament sliding|regulation of ATPase activity|regulation of blood pressure|regulation of heart rate|regulation of the force of heart contraction|sarcomere organization|striated muscle contraction|ventricular cardiac muscle tissue morphogenesis|visceral muscle development	cytosol|focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|protein kinase binding|structural constituent of muscle			pancreas(2)|ovary(1)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00764)|READ - Rectum adenocarcinoma(4;0.0289)|Colorectal(4;0.0441)		CTGCATCCAGGGAGGTCTGCA	0.592													21	119					0	0	0.012319	0	0
JPH4	84502	broad.mit.edu	37	14	24040512	24040512	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:24040512G>A	uc001wkq.2	-	6	2346	c.1428C>T	c.(1426-1428)TGC>TGT	p.C476C	JPH4_uc010tnr.1_Silent_p.C141C|JPH4_uc001wkr.2_Silent_p.C476C	NM_032452	NP_115828	Q96JJ6	JPH4_HUMAN	junctophilin 4	476	Cytoplasmic (Potential).				calcium ion transport into cytosol|regulation of ryanodine-sensitive calcium-release channel activity	integral to membrane|junctional sarcoplasmic reticulum membrane				ovary(1)|pancreas(1)	2	all_cancers(95;0.000251)			GBM - Glioblastoma multiforme(265;0.00654)		GTGGGCTCCGGCAGGCAGGGG	0.682													10	58					0	0	0.006214	0	0
REC8	9985	broad.mit.edu	37	14	24646965	24646965	+	Splice_Site	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:24646965G>A	uc001wmr.2	+	13	1291	c.864_splice	c.e13+1	p.E288_splice	REC8_uc001wms.2_Splice_Site_p.E288_splice	NM_005132	NP_005123	O95072	REC8_HUMAN	REC8 homolog						mitotic metaphase/anaphase transition|mitotic prometaphase|reciprocal meiotic recombination|sister chromatid cohesion	nucleoplasm					0				GBM - Glioblastoma multiforme(265;0.00839)		CAGCCCAGAGGTGAGTAGCCT	0.547													5	13					0	0	0.000602	0	0
TSSK4	283629	broad.mit.edu	37	14	24676380	24676380	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:24676380G>A	uc001wng.2	+	3	637	c.469G>A	c.(469-471)GAC>AAC	p.D157N	TM9SF1_uc010tob.1_Intron|TSSK4_uc001wne.2_Missense_Mutation_p.D81N|TSSK4_uc001wnf.2_Missense_Mutation_p.D87N|TSSK4_uc001wnh.2_Missense_Mutation_p.D167N	NM_174944	NP_777604	Q6SA08	TSSK4_HUMAN	testis-specific serine kinase 4	157	Protein kinase.				cell differentiation|multicellular organismal development|positive regulation of CREB transcription factor activity|spermatogenesis		ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity				0				GBM - Glioblastoma multiforme(265;0.018)		CCTGTTGCTGGACAAGTGGGA	0.522													56	69					0	0	0.014410	0	0
TM9SF1	10548	broad.mit.edu	37	14	24680673	24680673	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:24680673G>A	uc010tob.1	-	3	1019	c.385C>T	c.(385-387)CTT>TTT	p.L129F	CHMP4A_uc001wni.2_Missense_Mutation_p.L146F|CHMP4A_uc010toc.1_RNA|CHMP4A_uc001wnj.2_Missense_Mutation_p.L146F	NM_006405	NP_006396	O15321	TM9S1_HUMAN	transmembrane 9 superfamily member 1 isoform a	Error:Variant_position_missing_in_O15321_after_alignment					autophagy	autophagic vacuole membrane|cytoplasmic vesicle|integral to membrane|lysosomal membrane				ovary(1)	1				GBM - Glioblastoma multiforme(265;0.0183)		ATGGTACGAAGGACTTCTGCA	0.557													3	12					0	0	0.004672	0	0
DHRS1	115817	broad.mit.edu	37	14	24765783	24765783	+	Missense_Mutation	SNP	G	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:24765783G>T	uc001woj.1	-	4	575	c.306C>A	c.(304-306)AAC>AAA	p.N102K	DHRS1_uc010aln.1_5'Flank|DHRS1_uc001wok.2_Missense_Mutation_p.N102K	NM_138452	NP_612461	Q96LJ7	DHRS1_HUMAN	dehydrogenase/reductase (SDR family) member 1	102						endoplasmic reticulum	binding|oxidoreductase activity				0				GBM - Glioblastoma multiforme(265;2.81e-08)|OV - Ovarian serous cystadenocarcinoma(311;0.0442)		TATTCCTGGTGTTCAGGATCG	0.552											OREG0022622	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	17	101					9.16793e-09	9.85771e-09	0.004990	1	0
C14orf21	161424	broad.mit.edu	37	14	24771528	24771528	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:24771528C>T	uc001wol.1	+	5	1104	c.1041C>T	c.(1039-1041)CTC>CTT	p.L347L	C14orf21_uc001wom.1_5'Flank|DHRS1_uc001woj.1_5'Flank|DHRS1_uc001wok.2_5'Flank	NM_174913	NP_777573	Q86U38	CN021_HUMAN	hypothetical protein LOC161424	347	Pumilio 3.						RNA binding			breast(2)|central_nervous_system(1)|skin(1)	4				GBM - Glioblastoma multiforme(265;0.0185)		TCCAGAGCCTCTTTGAGGAGC	0.577													28	85					0	0	0.005443	0	0
ADCY4	196883	broad.mit.edu	37	14	24791356	24791356	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:24791356C>T	uc001wov.2	-	20	2508	c.2502G>A	c.(2500-2502)ATG>ATA	p.M834I	ADCY4_uc001wow.2_Missense_Mutation_p.M834I|ADCY4_uc010toh.1_Missense_Mutation_p.M520I|ADCY4_uc001wox.2_Missense_Mutation_p.M834I|ADCY4_uc001woy.2_Missense_Mutation_p.M834I	NM_139247	NP_640340	Q8NFM4	ADCY4_HUMAN	adenylate cyclase 4	834	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	cytoplasm|integral to membrane|plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding|protein binding			ovary(1)|lung(1)|pancreas(1)	3				GBM - Glioblastoma multiforme(265;0.0192)		TCAGGTTCTCCATCGTCTCTG	0.622													57	60					0	0	0.014410	0	0
NFATC4	4776	broad.mit.edu	37	14	24839278	24839278	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:24839278G>A	uc001wpc.2	+	2	995	c.674G>A	c.(673-675)TGG>TAG	p.W225*	NFATC4_uc010tok.1_Nonsense_Mutation_p.W288*|NFATC4_uc010tol.1_Nonsense_Mutation_p.W288*|NFATC4_uc010alr.2_Nonsense_Mutation_p.W288*|NFATC4_uc010als.2_Nonsense_Mutation_p.W238*|NFATC4_uc010tom.1_Nonsense_Mutation_p.W238*|NFATC4_uc010ton.1_Nonsense_Mutation_p.W238*|NFATC4_uc010too.1_Nonsense_Mutation_p.W238*|NFATC4_uc010alt.2_Nonsense_Mutation_p.W257*|NFATC4_uc010top.1_Nonsense_Mutation_p.W257*|NFATC4_uc010toq.1_Nonsense_Mutation_p.W257*|NFATC4_uc010alu.2_Intron|NFATC4_uc010tor.1_Nonsense_Mutation_p.W225*|NFATC4_uc010tos.1_Nonsense_Mutation_p.W155*|NFATC4_uc010tot.1_Nonsense_Mutation_p.W213*|NFATC4_uc010tou.1_Nonsense_Mutation_p.W155*|NFATC4_uc010tov.1_Nonsense_Mutation_p.W213*|NFATC4_uc010tow.1_Nonsense_Mutation_p.W155*|NFATC4_uc010alv.2_Nonsense_Mutation_p.W213*|NFATC4_uc010tox.1_Nonsense_Mutation_p.W155*|NFATC4_uc001wpd.2_5'Flank|NFATC4_uc010toy.1_5'Flank|NFATC4_uc010toz.1_5'Flank	NM_004554	NP_004545	Q14934	NFAC4_HUMAN	nuclear factor of activated T-cells,	225	SP 1.|Pro-rich.|2 approximate SP repeats.				cell differentiation|inflammatory response|transcription from RNA polymerase II promoter	cytoplasm|intermediate filament cytoskeleton|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			ovary(1)|central_nervous_system(1)|skin(1)	3				GBM - Glioblastoma multiforme(265;0.018)		CCTCGGCCATGGACCCCCGAA	0.692													4	20					0	0	0.009096	0	0
NYNRIN	57523	broad.mit.edu	37	14	24878928	24878928	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:24878928C>T	uc001wpf.3	+	4	2246	c.1928C>T	c.(1927-1929)CCC>CTC	p.P643L		NM_025081	NP_079357	Q9P2P1	NYNRI_HUMAN	hypothetical protein LOC57523	643					DNA integration	integral to membrane	DNA binding			ovary(2)|central_nervous_system(1)	3						CCCAAAACACCCAAAGCTCAA	0.537													3	4					0	0	0.009096	0	0
CMA1	1215	broad.mit.edu	37	14	24975483	24975483	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:24975483C>T	uc001wpp.1	-	4	381	c.351G>A	c.(349-351)AAG>AAA	p.K117K	CMA1_uc010alx.1_Silent_p.K6K	NM_001836	NP_001827	P23946	CMA1_HUMAN	chymase 1, mast cell preproprotein	117	Peptidase S1.				interleukin-1 beta biosynthetic process|proteolysis	extracellular region	serine-type endopeptidase activity				0				GBM - Glioblastoma multiforme(265;0.0271)		TGGCTTTCTCCTTCAACTGTG	0.557													5	33					0	0	0.004482	0	0
PRKD1	5587	broad.mit.edu	37	14	30102112	30102112	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:30102112G>A	uc001wqh.2	-	9	1536	c.1355C>T	c.(1354-1356)ACC>ATC	p.T452I		NM_002742	NP_002733	Q15139	KPCD1_HUMAN	protein kinase D1	452	PH.				cell proliferation|intracellular signal transduction|sphingolipid metabolic process	cytosol|integral to plasma membrane	ATP binding|metal ion binding|protein binding|protein kinase C activity			lung(3)|large_intestine(2)|ovary(2)|skin(1)	8	Hepatocellular(127;0.0604)		LUAD - Lung adenocarcinoma(48;0.00527)|Lung(238;0.0252)	GBM - Glioblastoma multiforme(265;0.00888)		CTGAAAGAGGGTAATACATTT	0.368													26	87					0	0	0.007291	0	0
HECTD1	25831	broad.mit.edu	37	14	31598524	31598524	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:31598524G>A	uc001wrc.1	-	25	4542	c.4053C>T	c.(4051-4053)TCC>TCT	p.S1351S	HECTD1_uc001wrb.1_5'Flank|HECTD1_uc001wrd.1_Intron	NM_015382	NP_056197	Q9ULT8	HECD1_HUMAN	HECT domain containing 1	1351	Ser-rich.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	intracellular	metal ion binding|protein binding|ubiquitin-protein ligase activity			ovary(3)|large_intestine(1)|lung(1)	5	Hepatocellular(127;0.0877)|Breast(36;0.176)		LUAD - Lung adenocarcinoma(48;0.00292)|Lung(238;0.0164)|BRCA - Breast invasive adenocarcinoma(188;0.111)|STAD - Stomach adenocarcinoma(7;0.173)	GBM - Glioblastoma multiforme(265;0.00617)		CTGAAACAGTGGATGAAACAG	0.493													50	49					0	0	0.014410	0	0
HECTD1	25831	broad.mit.edu	37	14	31642629	31642629	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:31642629G>A	uc001wrc.1	-	6	1378	c.889C>T	c.(889-891)CTT>TTT	p.L297F		NM_015382	NP_056197	Q9ULT8	HECD1_HUMAN	HECT domain containing 1	297					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	intracellular	metal ion binding|protein binding|ubiquitin-protein ligase activity			ovary(3)|large_intestine(1)|lung(1)	5	Hepatocellular(127;0.0877)|Breast(36;0.176)		LUAD - Lung adenocarcinoma(48;0.00292)|Lung(238;0.0164)|BRCA - Breast invasive adenocarcinoma(188;0.111)|STAD - Stomach adenocarcinoma(7;0.173)	GBM - Glioblastoma multiforme(265;0.00617)		GACCTCAGAAGATCCTAGAAA	0.353													15	21					0	0	0.002450	0	0
AKAP6	9472	broad.mit.edu	37	14	33290821	33290821	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:33290821C>T	uc001wrq.2	+	13	3972	c.3802C>T	c.(3802-3804)CAT>TAT	p.H1268Y		NM_004274	NP_004265	Q13023	AKAP6_HUMAN	A-kinase anchor protein 6	1268					protein targeting	calcium channel complex|nuclear membrane|sarcoplasmic reticulum	protein kinase A binding|receptor binding			breast(6)|ovary(5)|lung(4)|skin(3)|large_intestine(2)|pancreas(1)	21	Breast(36;0.0388)|Prostate(35;0.15)		LUAD - Lung adenocarcinoma(48;0.00107)|Lung(238;0.00677)|STAD - Stomach adenocarcinoma(7;0.116)	GBM - Glioblastoma multiforme(265;0.019)		GGCTGATAACCATGGGGGATC	0.463													9	30					0	0	0.004482	0	0
SRP54	6729	broad.mit.edu	37	14	35478029	35478029	+	Missense_Mutation	SNP	T	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:35478029T>A	uc001wso.2	+	7	828	c.477T>A	c.(475-477)TTT>TTA	p.F159L	SRP54_uc010tpp.1_Missense_Mutation_p.F110L|SRP54_uc010tpq.1_Missense_Mutation_p.F95L	NM_003136	NP_003127	P61011	SRP54_HUMAN	signal recognition particle 54kDa isoform 1	159	G-domain.				GTP catabolic process|response to drug|SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition|SRP-dependent cotranslational protein targeting to membrane, translocation	cytosol|nuclear speck|signal recognition particle, endoplasmic reticulum targeting	7S RNA binding|drug binding|endoplasmic reticulum signal peptide binding|GDP binding|GTP binding|nucleoside-triphosphatase activity|ribonucleoprotein binding			ovary(1)	1	Breast(36;0.0545)|Hepatocellular(127;0.158)		LUAD - Lung adenocarcinoma(48;2.48e-05)|Lung(238;3.13e-05)|Epithelial(34;0.0314)|all cancers(34;0.0797)|BRCA - Breast invasive adenocarcinoma(188;0.243)	GBM - Glioblastoma multiforme(112;0.0396)		GAATTCCATTTTATGGAAGGT	0.264													5	18					0	0	0.000602	0	0
NFKBIA	4792	broad.mit.edu	37	14	35872485	35872485	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:35872485G>A	uc001wtf.3	-	3	528	c.418C>T	c.(418-420)CGA>TGA	p.R140*	NFKBIA_uc001wte.3_Nonsense_Mutation_p.R50*|NFKBIA_uc001wtg.3_Nonsense_Mutation_p.R140*|NFKBIA_uc010amo.2_RNA	NM_020529	NP_065390	P25963	IKBA_HUMAN	nuclear factor of kappa light polypeptide gene	140					anti-apoptosis|apoptosis|cellular response to cold|cytoplasmic sequestering of NF-kappaB|innate immune response|interspecies interaction between organisms|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of DNA binding|negative regulation of lipid storage|negative regulation of macrophage derived foam cell differentiation|negative regulation of NF-kappaB transcription factor activity|nerve growth factor receptor signaling pathway|positive regulation of cellular protein metabolic process|positive regulation of cholesterol efflux|positive regulation of NF-kappaB transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|I-kappaB/NF-kappaB complex|nucleus|plasma membrane	identical protein binding|NF-kappaB binding|nuclear localization sequence binding|ubiquitin protein ligase binding			breast(2)	2	Breast(36;0.0484)|Hepatocellular(127;0.158)		Lung(238;9.25e-06)|LUAD - Lung adenocarcinoma(48;1.53e-05)|Epithelial(34;0.00314)|all cancers(34;0.00891)	GBM - Glioblastoma multiforme(112;0.0222)		CGAAAGTCTCGGAGCTCAGGA	0.587													13	67					0	0	0.003163	0	0
SLC25A21	89874	broad.mit.edu	37	14	37153959	37153959	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:37153959G>A	uc001wtz.1	-	8	1085	c.775C>T	c.(775-777)CAG>TAG	p.Q259*		NM_030631	NP_085134	Q9BQT8	ODC_HUMAN	solute carrier family 25 (mitochondrial	259	Solcar 3.				lysine catabolic process	integral to membrane|mitochondrial inner membrane	alpha-ketoglutarate transmembrane transporter activity|binding			skin(1)	1	Esophageal squamous(585;0.164)|Breast(36;0.179)|Hepatocellular(127;0.213)		Lung(8;2.16e-08)|LUAD - Lung adenocarcinoma(9;2.16e-07)|Epithelial(34;0.0112)|all cancers(34;0.0274)|LUSC - Lung squamous cell carcinoma(13;0.149)	GBM - Glioblastoma multiforme(112;0.00204)		CCTTCTTCCTGATAGACTGTT	0.383													19	82					0	0	0.007413	0	0
MIPOL1	145282	broad.mit.edu	37	14	37739697	37739697	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:37739697G>A	uc001wuc.2	+	7	963	c.460G>A	c.(460-462)GAA>AAA	p.E154K	MIPOL1_uc010amr.2_RNA|MIPOL1_uc001wub.3_Missense_Mutation_p.E123K|MIPOL1_uc001wud.2_Missense_Mutation_p.E154K|MIPOL1_uc010ams.2_Missense_Mutation_p.E154K|MIPOL1_uc001wue.2_Missense_Mutation_p.E123K|MIPOL1_uc010amt.2_Intron	NM_138731	NP_620059	Q8TD10	MIPO1_HUMAN	mirror-image polydactyly 1	154	Potential.									ovary(1)|central_nervous_system(1)	2	Breast(36;0.119)|Esophageal squamous(585;0.164)|Hepatocellular(127;0.213)		Lung(238;6.03e-07)|LUAD - Lung adenocarcinoma(48;2.48e-05)|Epithelial(34;0.047)|all cancers(34;0.0953)|LUSC - Lung squamous cell carcinoma(13;0.0975)|BRCA - Breast invasive adenocarcinoma(188;0.196)	GBM - Glioblastoma multiforme(112;0.0358)		CCAAGAGAAAGAAACAGAAGC	0.338													15	18					0	0	0.003163	0	0
CLEC14A	161198	broad.mit.edu	37	14	38724495	38724495	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:38724495G>A	uc001wum.1	-	1	1080	c.733C>T	c.(733-735)CCC>TCC	p.P245S		NM_175060	NP_778230	Q86T13	CLC14_HUMAN	C-type lectin domain family 14, member A	245	Extracellular (Potential).|EGF-like.					integral to membrane	sugar binding			ovary(3)|skin(1)	4	Hepatocellular(127;0.213)|Esophageal squamous(585;0.22)		Lung(238;3.93e-06)|LUAD - Lung adenocarcinoma(48;2.62e-05)|Epithelial(34;0.187)	GBM - Glioblastoma multiforme(112;0.00439)		CCGGGGCAGGGACACAACACA	0.617													28	160					0	0	0.013726	0	0
Unknown	0	broad.mit.edu	37	14	39304946	39304946	+	RNA	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:39304946G>A	uc001wun.2	-	3		c.3615C>T			uc001wuo.2_RNA|uc010amw.1_RNA					Homo sapiens cDNA FLJ43028 fis, clone BRTHA3000297.																		AGTGTTAGCAGTGAGGGAAGG	0.527													5	5					0	0	0.001168	0	0
CTAGE5	4253	broad.mit.edu	37	14	39790138	39790138	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:39790138C>T	uc001wvg.3	+	19	1886	c.1550C>T	c.(1549-1551)TCC>TTC	p.S517F	CTAGE5_uc010tqe.1_Missense_Mutation_p.S479F|CTAGE5_uc001wuz.3_Missense_Mutation_p.S505F|CTAGE5_uc001wuy.3_Missense_Mutation_p.S437F|CTAGE5_uc001wvb.3_Intron|CTAGE5_uc001wvc.3_Intron|CTAGE5_uc001wva.3_Missense_Mutation_p.S488F|CTAGE5_uc001wvh.3_Intron|CTAGE5_uc001wvf.3_Missense_Mutation_p.S442F|CTAGE5_uc001wvi.3_Missense_Mutation_p.S522F|CTAGE5_uc010amz.2_Missense_Mutation_p.S133F|CTAGE5_uc001wvj.3_Missense_Mutation_p.S488F	NM_005930	NP_005921	O15320	CTGE5_HUMAN	CTAGE family, member 5 isoform 1	517	Pro-rich.						enzyme activator activity|protein binding				0	Hepatocellular(127;0.213)		LUAD - Lung adenocarcinoma(48;0.000565)|Lung(238;0.000711)	GBM - Glioblastoma multiforme(112;0.0475)		CCAGAGCATTCCCCATATGGT	0.418													34	57					0	0	0.006999	0	0
LRFN5	145581	broad.mit.edu	37	14	42356279	42356279	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:42356279G>A	uc001wvm.2	+	3	1649	c.451G>A	c.(451-453)GAG>AAG	p.E151K	LRFN5_uc010ana.2_Missense_Mutation_p.E151K	NM_152447	NP_689660	Q96NI6	LRFN5_HUMAN	leucine rich repeat and fibronectin type III	151	Extracellular (Potential).|LRR 5.					integral to membrane				ovary(5)|pancreas(2)|central_nervous_system(1)	8			LUAD - Lung adenocarcinoma(50;0.0223)|Lung(238;0.0728)	GBM - Glioblastoma multiforme(112;0.00847)		CGCCCTTGAGGAGCTGGATCT	0.393										HNSCC(30;0.082)			13	45					0	0	0.003163	0	0
LRFN5	145581	broad.mit.edu	37	14	42360456	42360456	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:42360456G>A	uc001wvm.2	+	4	2587	c.1389G>A	c.(1387-1389)ATG>ATA	p.M463I	LRFN5_uc010ana.2_Intron	NM_152447	NP_689660	Q96NI6	LRFN5_HUMAN	leucine rich repeat and fibronectin type III	463	Extracellular (Potential).|Fibronectin type-III.					integral to membrane				ovary(5)|pancreas(2)|central_nervous_system(1)	8			LUAD - Lung adenocarcinoma(50;0.0223)|Lung(238;0.0728)	GBM - Glioblastoma multiforme(112;0.00847)		CCCTCAGAATGATACCTCCTA	0.363										HNSCC(30;0.082)			8	26					0	0	0.003080	0	0
FSCB	84075	broad.mit.edu	37	14	44974751	44974751	+	Silent	SNP	C	T	T	rs17115207	byFrequency	TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:44974751C>T	uc001wvn.2	-	1	1749	c.1440G>A	c.(1438-1440)ACG>ACA	p.T480T		NM_032135	NP_115511	Q5H9T9	FSCB_HUMAN	fibrous sheath CABYR binding protein	480	Ala-rich.					cilium				lung(3)|breast(3)|ovary(2)|central_nervous_system(1)	9				GBM - Glioblastoma multiforme(112;0.128)		CAGGAGGCTCCGTAGCTGCTA	0.507													15	10					0	0	0.007413	0	0
C14orf28	122525	broad.mit.edu	37	14	45369720	45369720	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:45369720C>T	uc001wvo.2	+	2	348	c.82C>T	c.(82-84)CCT>TCT	p.P28S	C14orf28_uc001wvp.1_Missense_Mutation_p.P28S	NM_001017923	NP_001017923	Q4W4Y0	CN028_HUMAN	hypothetical protein LOC122525	28										ovary(1)	1						GCCTGTTCTTCCTTGGGGGGG	0.373													8	46					0	0	0.006214	0	0
KLHL28	54813	broad.mit.edu	37	14	45400586	45400587	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:45400586_45400587GG>AA	uc001wvq.2	-	4	1747_1748	c.1501_1502CC>TT	c.(1501-1503)CCT>TTT	p.P501F	KLHL28_uc001wvr.2_Missense_Mutation_p.P501F	NM_017658	NP_060128	Q9NXS3	KLH28_HUMAN	BTB (POZ) domain containing 5	501	Kelch 5.									ovary(1)	1						ATTTTGATGAGGATCGTATCTT	0.366													6	31					0	0	0.004672	0	0
FANCM	57697	broad.mit.edu	37	14	45633685	45633685	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:45633685C>T	uc001wwd.3	+	10	1804	c.1705C>T	c.(1705-1707)CGT>TGT	p.R569C	FANCM_uc001wwc.2_Missense_Mutation_p.R569C|FANCM_uc010anf.2_Missense_Mutation_p.R543C|FANCM_uc001wwe.3_Intron	NM_020937	NP_065988	Q8IYD8	FANCM_HUMAN	Fanconi anemia, complementation group M	569	Helicase C-terminal.				DNA repair	Fanconi anaemia nuclear complex	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding|nuclease activity|protein binding			ovary(3)|lung(2)|breast(2)	7						GAGCCCAATTCGTCTTGTACA	0.433								Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				12	41					0	0	0.013537	0	0
RPL10L	140801	broad.mit.edu	37	14	47120333	47120333	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:47120333G>A	uc001wwg.2	-	1	696	c.607C>T	c.(607-609)CAT>TAT	p.H203Y		NM_080746	NP_542784	Q96L21	RL10L_HUMAN	ribosomal protein L10-like protein	203					spermatogenesis|translation	cytosolic large ribosomal subunit|nucleus	structural constituent of ribosome			ovary(1)	1						AAGGGGCCATGACTGGGAACG	0.493													9	43					0	0	0.008291	0	0
SOS2	6655	broad.mit.edu	37	14	50655308	50655308	+	Silent	SNP	G	A	A	rs147109760	byFrequency	TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:50655308G>A	uc001wxs.3	-	5	719	c.621C>T	c.(619-621)ATC>ATT	p.I207I	SOS2_uc010tql.1_Silent_p.I207I	NM_006939	NP_008870	Q07890	SOS2_HUMAN	son of sevenless homolog 2	207	DH.				apoptosis|axon guidance|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	DNA binding|protein binding|Rho guanyl-nucleotide exchange factor activity			ovary(2)	2	all_epithelial(31;0.000822)|Breast(41;0.0065)					TTTCTTCTGCGATTTCAGTTC	0.353													8	24					0	0	0.003080	0	0
L2HGDH	79944	broad.mit.edu	37	14	50732104	50732104	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:50732104G>A	uc001wxu.2	-	9	1247	c.1168C>T	c.(1168-1170)CCT>TCT	p.P390S	L2HGDH_uc010tqn.1_Missense_Mutation_p.P390S|L2HGDH_uc010tqo.1_Missense_Mutation_p.P390S	NM_024884	NP_079160	Q9H9P8	L2HDH_HUMAN	L-2-hydroxyglutarate dehydrogenase precursor	390					2-oxoglutarate metabolic process|cellular protein metabolic process	integral to mitochondrial inner membrane	2-hydroxyglutarate dehydrogenase activity			ovary(2)	2	all_epithelial(31;0.000599)|Breast(41;0.0102)					GTAATTTCAGGGATGAATTTT	0.373													5	29					0	0	0.000602	0	0
PYGL	5836	broad.mit.edu	37	14	51398399	51398399	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:51398399C>T	uc001wyu.2	-	4	647	c.520G>A	c.(520-522)GGA>AGA	p.G174R	PYGL_uc010tqq.1_Missense_Mutation_p.G140R|PYGL_uc001wyv.2_5'UTR|PYGL_uc001wyw.3_Missense_Mutation_p.G174R	NM_002863	NP_002854	P06737	PYGL_HUMAN	liver glycogen phosphorylase isoform 1	174					glucose homeostasis|glucose metabolic process|glycogen catabolic process	cytosol|soluble fraction	AMP binding|ATP binding|bile acid binding|drug binding|glucose binding|glycogen phosphorylase activity|protein homodimerization activity|purine base binding|pyridoxal phosphate binding			skin(1)	1	all_epithelial(31;0.00825)|Breast(41;0.148)				Adenosine monophosphate(DB00131)|Pyridoxal Phosphate(DB00114)|Riboflavin(DB00140)	ACCTGCCATCCATCTCGGATC	0.413													13	57					0	0	0.001855	0	0
PTGER2	5732	broad.mit.edu	37	14	52781482	52781482	+	Silent	SNP	C	T	T	rs143268571		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:52781482C>T	uc001wzr.2	+	1	467	c.216C>T	c.(214-216)ACC>ACT	p.T72T		NM_000956	NP_000947	P43116	PE2R2_HUMAN	prostaglandin E receptor 2 (subtype EP2), 53kDa	72	Helical; Name=2; (Potential).					integral to plasma membrane	prostaglandin E receptor activity			lung(1)|breast(1)	2	Breast(41;0.0639)|all_epithelial(31;0.0729)				Alprostadil(DB00770)|Iloprost(DB01088)	TGCTGGTGACCGAGCTGGTGT	0.692													21	31					0	0	0.014323	0	0
BMP4	652	broad.mit.edu	37	14	54417562	54417562	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:54417562G>A	uc001xal.3	-	3	602	c.415C>T	c.(415-417)CGT>TGT	p.R139C	BMP4_uc010aoh.2_Missense_Mutation_p.R139C|BMP4_uc001xao.3_Missense_Mutation_p.R139C|BMP4_uc001xan.3_Missense_Mutation_p.R139C	NM_130851	NP_570912	P12644	BMP4_HUMAN	bone morphogenetic protein 4 preproprotein	139					activation of MAPKK activity|blood vessel endothelial cell proliferation involved in sprouting angiogenesis|BMP signaling pathway involved in heart induction|BMP signaling pathway involved in nephric duct formation|branching involved in ureteric bud morphogenesis|bronchus development|bud dilation involved in lung branching|cardiac septum development|cartilage development|endocardial cushion development|epithelial cell proliferation involved in lung morphogenesis|intermediate mesodermal cell differentiation|lung alveolus development|lymphoid progenitor cell differentiation|mesenchymal to epithelial transition involved in metanephros morphogenesis|mesonephros development|negative regulation of branch elongation involved in ureteric bud branching by BMP signaling pathway|negative regulation of branching involved in ureteric bud morphogenesis|negative regulation of cell proliferation involved in heart morphogenesis|negative regulation of glomerular mesangial cell proliferation|negative regulation of glomerulus development|negative regulation of immature T cell proliferation in thymus|negative regulation of MAP kinase activity|negative regulation of metanephric comma-shaped body morphogenesis|negative regulation of metanephric S-shaped body morphogenesis|negative regulation of mitosis|negative regulation of myoblast differentiation|negative regulation of phosphorylation|negative regulation of striated muscle tissue development|negative regulation of thymocyte apoptosis|negative regulation of transcription from RNA polymerase II promoter|osteoblast differentiation|positive regulation of apoptosis|positive regulation of bone mineralization|positive regulation of cardiac muscle fiber development|positive regulation of cartilage development|positive regulation of collagen biosynthetic process|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of kidney development|positive regulation of osteoblast differentiation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of SMAD protein import into nucleus|positive regulation of smooth muscle cell proliferation|positive regulation of transcription from RNA polymerase II promoter|post-embryonic development|protein localization to nucleus|pulmonary artery endothelial tube morphogenesis|secondary heart field specification|SMAD protein signal transduction|specification of ureteric bud anterior/posterior symmetry by BMP signaling pathway|steroid hormone mediated signaling pathway	extracellular space|proteinaceous extracellular matrix	BMP receptor binding|chemoattractant activity|cytokine activity|growth factor activity				0						AAGAGGAAACGAAAAGCAGAG	0.498													17	22					0	0	0.007413	0	0
DLGAP5	9787	broad.mit.edu	37	14	55647984	55647984	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:55647984C>T	uc001xbs.2	-	5	744	c.527G>A	c.(526-528)CGA>CAA	p.R176Q	DLGAP5_uc001xbt.2_Missense_Mutation_p.R176Q	NM_014750	NP_055565	Q15398	DLGP5_HUMAN	discs large homolog 7 isoform a	176					cell proliferation|cell-cell signaling|mitotic chromosome movement towards spindle pole|positive regulation of mitotic metaphase/anaphase transition	nucleus|spindle pole centrosome	phosphoprotein phosphatase activity|protein binding			ovary(1)|skin(1)	2						TGGACCAGGTCGGATTGCTCG	0.358													11	17					0	0	0.001855	0	0
TBPL2	387332	broad.mit.edu	37	14	55907199	55907200	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:55907199_55907200GG>AT	uc001xby.2	-	1	64_65	c.64_65CC>AT	c.(64-66)CCG>ATG	p.P22M		NM_199047	NP_950248	Q6SJ96	TBPL2_HUMAN	TATA box binding protein like 2	22	Poly-Pro.				multicellular organismal development|transcription initiation from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding				0						GGGTGGGGGCGGGTAAGAGGGT	0.693													20	40					0	0	0.004672	0	0
PELI2	57161	broad.mit.edu	37	14	56763339	56763339	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:56763339C>T	uc001xch.2	+	6	1004	c.718C>T	c.(718-720)CTG>TTG	p.L240L		NM_021255	NP_067078	Q9HAT8	PELI2_HUMAN	pellino 2	240					innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of MAPKKK cascade|positive regulation of protein phosphorylation|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	cytosol	protein binding			ovary(1)	1						GACCAACGTCCTGCAGGACGG	0.473													24	27					0	0	0.003954	0	0
OTX2	5015	broad.mit.edu	37	14	57268471	57268471	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:57268471C>T	uc001xcp.2	-	3	1023	c.852G>A	c.(850-852)TGG>TGA	p.W284*	OTX2_uc010aou.2_Nonsense_Mutation_p.W284*|OTX2_uc001xcq.2_Nonsense_Mutation_p.W292*	NM_172337	NP_758840	P32243	OTX2_HUMAN	orthodenticle homeobox 2 isoform b	284					axon guidance|forebrain development|midbrain development|positive regulation of embryonic development|positive regulation of gastrulation|primitive streak formation|protein complex assembly|regulation of fibroblast growth factor receptor signaling pathway|regulation of smoothened signaling pathway	growth cone|nucleus|protein complex	eukaryotic initiation factor 4E binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|sequence-specific DNA binding			ovary(1)	1	Medulloblastoma(1;0.00184)|all_neural(1;0.00414)					CCTGGAATTTCCACGAGGATG	0.408													5	51					0	0	0.001168	0	0
OTX2	5015	broad.mit.edu	37	14	57268766	57268766	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:57268766C>T	uc001xcp.2	-	3	728	c.557G>A	c.(556-558)AGT>AAT	p.S186N	OTX2_uc010aou.2_Missense_Mutation_p.S186N|OTX2_uc001xcq.2_Missense_Mutation_p.S194N	NM_172337	NP_758840	P32243	OTX2_HUMAN	orthodenticle homeobox 2 isoform b	186					axon guidance|forebrain development|midbrain development|positive regulation of embryonic development|positive regulation of gastrulation|primitive streak formation|protein complex assembly|regulation of fibroblast growth factor receptor signaling pathway|regulation of smoothened signaling pathway	growth cone|nucleus|protein complex	eukaryotic initiation factor 4E binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|sequence-specific DNA binding			ovary(1)	1	Medulloblastoma(1;0.00184)|all_neural(1;0.00414)					ATATCCTTGACTATAACCTGA	0.537													28	30					0	0	0.005443	0	0
EXOC5	10640	broad.mit.edu	37	14	57676445	57676445	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:57676445G>A	uc001xct.2	-	17	2029	c.1778C>T	c.(1777-1779)TCC>TTC	p.S593F	EXOC5_uc001xcs.2_Missense_Mutation_p.S272F|EXOC5_uc010trg.1_Missense_Mutation_p.S538F|EXOC5_uc010trh.1_Missense_Mutation_p.S528F	NM_006544	NP_006535	O00471	EXOC5_HUMAN	SEC10 protein	593					exocytosis|post-Golgi vesicle-mediated transport|protein transport|vesicle docking	cytoplasm				ovary(2)|breast(1)	3						CCCATCCATGGAATTTTTAAT	0.363													10	8					0	0	0.008291	0	0
C14orf105	55195	broad.mit.edu	37	14	57938251	57938251	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:57938251C>T	uc001xcy.2	-	6	856	c.713G>A	c.(712-714)TGG>TAG	p.W238*	C14orf105_uc010trl.1_Nonsense_Mutation_p.W278*|C14orf105_uc010trm.1_Nonsense_Mutation_p.W149*|C14orf105_uc010trn.1_Nonsense_Mutation_p.W149*|C14orf105_uc001xcz.2_Nonsense_Mutation_p.W237*	NM_018168	NP_060638	Q9NVL8	CN105_HUMAN	hypothetical protein LOC55195	238											0						GCCAATTTTCCAGGGACAGTA	0.388													6	16					0	0	0.001984	0	0
SLC35F4	341880	broad.mit.edu	37	14	58055999	58055999	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:58055999G>A	uc001xdb.1	-	3	630	c.630C>T	c.(628-630)TTC>TTT	p.F210F	SLC35F4_uc010aoz.1_RNA|SLC35F4_uc010apa.1_Silent_p.F51F	NM_001080455	NP_001073924			solute carrier family 35, member F4											ovary(2)	2						AATAGACTGGGAAAAACATAA	0.348													17	42					0	0	0.004007	0	0
SLC35F4	341880	broad.mit.edu	37	14	58063540	58063540	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:58063540C>T	uc001xdb.1	-	1	76	c.76G>A	c.(76-78)GGT>AGT	p.G26S	SLC35F4_uc010aoz.1_RNA|SLC35F4_uc010apa.1_5'UTR	NM_001080455	NP_001073924			solute carrier family 35, member F4											ovary(2)	2						TGTGATATACCGCAAAGCCCA	0.423													14	25					0	0	0.002450	0	0
C14orf37	145407	broad.mit.edu	37	14	58598337	58598337	+	Missense_Mutation	SNP	G	A	A	rs145807752		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:58598337G>A	uc001xdc.2	-	4	1835	c.1724C>T	c.(1723-1725)CCT>CTT	p.P575L	C14orf37_uc010tro.1_Missense_Mutation_p.P613L|C14orf37_uc001xdd.2_Missense_Mutation_p.P575L|C14orf37_uc001xde.2_Missense_Mutation_p.P575L	NM_001001872	NP_001001872	Q86TY3	CN037_HUMAN	hypothetical protein LOC145407 precursor	575	Extracellular (Potential).					integral to membrane	binding				0						AGGAAGTGCAGGGGAAATGCT	0.498													31	34					0	0	0.008361	0	0
KIAA0586	9786	broad.mit.edu	37	14	58895132	58895132	+	Silent	SNP	T	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:58895132T>C	uc001xdv.3	+	1	423	c.150T>C	c.(148-150)AAT>AAC	p.N50N	KIAA0586_uc010trr.1_Silent_p.N50N|KIAA0586_uc001xdt.3_Intron|KIAA0586_uc001xdu.3_Silent_p.N35N|KIAA0586_uc010trs.1_Intron|TIMM9_uc010aph.2_5'Flank|TIMM9_uc001xds.2_5'Flank|TIMM9_uc010api.2_5'Flank	NM_014749	NP_055564	E9PGW8	E9PGW8_HUMAN	talpid3 protein	50										ovary(1)	1						TGTCTGCAAATAAACGTCTTC	0.403													27	34					0	0	0.006320	0	0
SIX1	6495	broad.mit.edu	37	14	61115468	61115468	+	Missense_Mutation	SNP	G	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:61115468G>C	uc001xfb.3	-	1	688	c.440C>G	c.(439-441)CCC>CGC	p.P147R		NM_005982	NP_005973	Q15475	SIX1_HUMAN	SIX homeobox 1	147	Homeobox.				branching involved in ureteric bud morphogenesis|embryonic cranial skeleton morphogenesis|epithelial cell differentiation|inner ear morphogenesis|mesonephric tubule formation|metanephric mesenchyme development|myoblast migration|negative regulation of neuron apoptosis|organ induction|pattern specification process|positive regulation of branching involved in ureteric bud morphogenesis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of ureteric bud formation|protein localization to nucleus|regulation of branch elongation involved in ureteric bud branching|regulation of neuron differentiation|skeletal muscle tissue development|thymus development|thyroid gland development	nucleolus|transcription factor complex	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding				0				OV - Ovarian serous cystadenocarcinoma(108;0.0201)		CGATGGGTAGGGATTGTGCGC	0.627													7	21					0	0	0.003080	0	0
SYT16	83851	broad.mit.edu	37	14	62536387	62536387	+	Missense_Mutation	SNP	A	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:62536387A>C	uc001xfu.1	+	2	787	c.590A>C	c.(589-591)CAA>CCA	p.Q197P	SYT16_uc010tsd.1_Missense_Mutation_p.Q197P	NM_031914	NP_114120	Q17RD7	SYT16_HUMAN	synaptotagmin XIV-like	197										central_nervous_system(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.0438)|BRCA - Breast invasive adenocarcinoma(234;0.118)		GTGATCAAACAATTTGAGATT	0.488													52	68					0	0	0.014410	0	0
SYT16	83851	broad.mit.edu	37	14	62551016	62551016	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:62551016C>T	uc001xfu.1	+	5	1734	c.1537C>T	c.(1537-1539)CTC>TTC	p.L513F	SYT16_uc010tse.1_Missense_Mutation_p.L71F	NM_031914	NP_114120	Q17RD7	SYT16_HUMAN	synaptotagmin XIV-like	513	C2 2.									central_nervous_system(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.0438)|BRCA - Breast invasive adenocarcinoma(234;0.118)		GTTGGTGGGGCTCTCGTACAA	0.552													12	63					0	0	0.013537	0	0
KCNH5	27133	broad.mit.edu	37	14	63246599	63246599	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:63246599G>A	uc001xfx.2	-	10	1917	c.1866C>T	c.(1864-1866)ACC>ACT	p.T622T	KCNH5_uc001xfy.2_Intron|KCNH5_uc001xfz.1_Silent_p.T564T	NM_139318	NP_647479	Q8NCM2	KCNH5_HUMAN	potassium voltage-gated channel, subfamily H,	622	cNMP.|Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	calmodulin binding|two-component sensor activity|voltage-gated potassium channel activity			ovary(4)|skin(4)|central_nervous_system(1)	9				OV - Ovarian serous cystadenocarcinoma(108;0.00958)|BRCA - Breast invasive adenocarcinoma(234;0.168)		CATGGGCAAGGGTGGTTTCCT	0.438													5	28					0	0	0.001168	0	0
SYNE2	23224	broad.mit.edu	37	14	64473769	64473769	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:64473769C>T	uc001xgm.2	+	31	4636	c.4406C>T	c.(4405-4407)TCA>TTA	p.S1469L	SYNE2_uc001xgl.2_Missense_Mutation_p.S1469L	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	1469	Potential.|Cytoplasmic (Potential).				centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		AGGAAAAAATCATTAATCAGA	0.343													13	91					0	0	0.003163	0	0
SYNE2	23224	broad.mit.edu	37	14	64681136	64681136	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:64681136C>T	uc001xgm.2	+	106	19511	c.19281C>T	c.(19279-19281)GGC>GGT	p.G6427G	SYNE2_uc001xgl.2_Silent_p.G6427G|SYNE2_uc010apy.2_Silent_p.G2812G|SYNE2_uc001xgn.2_Silent_p.G1389G|SYNE2_uc001xgo.2_RNA|SYNE2_uc010aqa.2_Silent_p.G397G|SYNE2_uc001xgq.2_Silent_p.G792G|SYNE2_uc001xgr.2_Silent_p.G210G|SYNE2_uc010tsi.1_Silent_p.G61G|SYNE2_uc001xgs.2_Silent_p.G61G|SYNE2_uc001xgt.2_5'Flank	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	6427	Cytoplasmic (Potential).				centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		ACGTGGGGGGCTCCTCCTCTC	0.637													9	24					0	0	0.006214	0	0
SYNE2	23224	broad.mit.edu	37	14	64683061	64683061	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:64683061C>T	uc001xgm.2	+	107	19659	c.19429C>T	c.(19429-19431)CCA>TCA	p.P6477S	SYNE2_uc001xgl.2_Missense_Mutation_p.P6500S|SYNE2_uc010apy.2_Missense_Mutation_p.P2862S|SYNE2_uc001xgn.2_Missense_Mutation_p.P1439S|SYNE2_uc001xgo.2_RNA|SYNE2_uc010aqa.2_Missense_Mutation_p.P447S|SYNE2_uc001xgq.2_Missense_Mutation_p.P842S|SYNE2_uc001xgr.2_Missense_Mutation_p.P260S|SYNE2_uc010tsi.1_Missense_Mutation_p.P134S|SYNE2_uc001xgs.2_Missense_Mutation_p.P134S|SYNE2_uc001xgt.2_Missense_Mutation_p.P8S	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	6477	Cytoplasmic (Potential).				centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		CAGGAATGTTCCACCTGTTCC	0.493													11	52					0	0	0.013537	0	0
SPTB	6710	broad.mit.edu	37	14	65249076	65249076	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:65249076C>T	uc001xht.2	-	19	4252	c.4198G>A	c.(4198-4200)GAC>AAC	p.D1400N	SPTB_uc001xhr.2_Missense_Mutation_p.D1400N|SPTB_uc001xhs.2_Missense_Mutation_p.D1400N|SPTB_uc001xhu.2_Missense_Mutation_p.D1400N|SPTB_uc010aqi.2_Missense_Mutation_p.D61N	NM_000347	NP_000338	P11277	SPTB1_HUMAN	spectrin beta isoform b	1400	Spectrin 11.				actin filament capping|axon guidance	cell surface|cytosol|intrinsic to internal side of plasma membrane|protein complex|spectrin|spectrin-associated cytoskeleton	actin filament binding|structural constituent of cytoskeleton			ovary(7)|skin(2)|lung(1)|central_nervous_system(1)	11		all_lung(585;4.15e-09)		all cancers(60;4.33e-34)|OV - Ovarian serous cystadenocarcinoma(108;8.32e-20)|BRCA - Breast invasive adenocarcinoma(234;0.0628)		CGCAGCTGGTCCTCCATGGCG	0.587													40	45					0	0	0.008740	0	0
FUT8	2530	broad.mit.edu	37	14	66208857	66208857	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:66208857C>T	uc001xin.2	+	11	2654	c.1457C>T	c.(1456-1458)GCC>GTC	p.A486V	FUT8_uc001xio.2_Missense_Mutation_p.A486V|FUT8_uc010tsp.1_Missense_Mutation_p.A323V|FUT8_uc001xir.3_RNA|FUT8_uc001xip.2_Missense_Mutation_p.A486V|FUT8_uc001xiq.2_Missense_Mutation_p.A357V|FUT8_uc001xis.2_Missense_Mutation_p.A80V	NM_178155	NP_835368	Q9BYC5	FUT8_HUMAN	fucosyltransferase 8 isoform a	486	Lumenal (Potential).				in utero embryonic development|L-fucose catabolic process|N-glycan processing|oligosaccharide biosynthetic process|post-translational protein modification|protein glycosylation in Golgi|protein N-linked glycosylation via asparagine	Golgi cisterna membrane|integral to membrane	glycoprotein 6-alpha-L-fucosyltransferase activity|SH3 domain binding			ovary(1)	1				all cancers(60;0.00109)|OV - Ovarian serous cystadenocarcinoma(108;0.00242)|BRCA - Breast invasive adenocarcinoma(234;0.0114)		CATCCTGATGCCTCTGCAAAC	0.398													9	78					0	0	0.006214	0	0
ARG2	384	broad.mit.edu	37	14	68114885	68114885	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:68114885G>A	uc001xjs.2	+	7	960	c.844G>A	c.(844-846)GAA>AAA	p.E282K		NM_001172	NP_001163	P78540	ARGI2_HUMAN	arginase 2 precursor	282					arginine metabolic process|nitric oxide biosynthetic process|urea cycle	mitochondrial matrix	arginase activity|metal ion binding				0				all cancers(60;0.000582)|OV - Ovarian serous cystadenocarcinoma(108;0.00392)|BRCA - Breast invasive adenocarcinoma(234;0.00928)	L-Arginine(DB00125)|L-Ornithine(DB00129)	TATTGCTGAGGAAATACACAA	0.443													4	40					0	0	0.009096	0	0
ZFYVE26	23503	broad.mit.edu	37	14	68244434	68244434	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:68244434C>T	uc001xka.2	-	25	4955	c.4816G>A	c.(4816-4818)GAC>AAC	p.D1606N	ZFYVE26_uc010tsz.1_RNA|ZFYVE26_uc001xkc.3_Missense_Mutation_p.D1606N	NM_015346	NP_056161	Q68DK2	ZFY26_HUMAN	zinc finger, FYVE domain containing 26	1606					cell cycle|cell death|cytokinesis|double-strand break repair via homologous recombination	centrosome|midbody	metal ion binding|phosphatidylinositol-3-phosphate binding|protein binding			ovary(9)|breast(2)	11				all cancers(60;0.000763)|OV - Ovarian serous cystadenocarcinoma(108;0.0011)|BRCA - Breast invasive adenocarcinoma(234;0.0115)		ATGGTGGGGTCAGGGATTCTT	0.498													14	48					0	0	0.004007	0	0
SMOC1	64093	broad.mit.edu	37	14	70461189	70461189	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:70461189G>A	uc001xls.1	+	7	909	c.656G>A	c.(655-657)AGA>AAA	p.R219K	SMOC1_uc001xlt.1_Missense_Mutation_p.R219K	NM_022137	NP_071420	Q9H4F8	SMOC1_HUMAN	secreted modular calcium-binding protein 1	219					cell differentiation|eye development|limb development|regulation of osteoblast differentiation|signal transduction	basement membrane	calcium ion binding			upper_aerodigestive_tract(1)|pancreas(1)	2				all cancers(60;0.00417)|BRCA - Breast invasive adenocarcinoma(234;0.0119)|OV - Ovarian serous cystadenocarcinoma(108;0.028)		ACCAACATAAGAAATTCAGGT	0.348													63	74					0	0	0.014410	0	0
ADAM21P1	145241	broad.mit.edu	37	14	70712964	70712964	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:70712964C>T	uc010ttg.1	-	1	1555	c.904G>A	c.(904-906)GAC>AAC	p.D302N		NR_003951				SubName: Full=ADAM21-like protein;												0						TCTGGAAGGTCACATTCATTG	0.483													18	20					0	0	0.004990	0	0
ADAM21P1	145241	broad.mit.edu	37	14	70713754	70713754	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:70713754C>T	uc010ttg.1	-	1	765	c.114G>A	c.(112-114)TGG>TGA	p.W38*		NR_003951				SubName: Full=ADAM21-like protein;												0						GCTCCAGAAACCATGCATGAG	0.433													16	52					0	0	0.007413	0	0
MAP3K9	4293	broad.mit.edu	37	14	71206780	71206780	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:71206780G>A	uc001xmm.2	-	7	1669	c.1669C>T	c.(1669-1671)CCT>TCT	p.P557S	MAP3K9_uc010ttk.1_Missense_Mutation_p.P294S|MAP3K9_uc001xmk.2_Missense_Mutation_p.P251S|MAP3K9_uc001xml.2_Missense_Mutation_p.P557S	NM_033141	NP_149132	P80192	M3K9_HUMAN	mitogen-activated protein kinase kinase kinase	557					activation of JUN kinase activity|protein autophosphorylation		ATP binding|JUN kinase kinase kinase activity|MAP kinase kinase activity|protein homodimerization activity			stomach(2)|lung(1)|central_nervous_system(1)|skin(1)	5				all cancers(60;0.00779)|BRCA - Breast invasive adenocarcinoma(234;0.00884)|OV - Ovarian serous cystadenocarcinoma(108;0.08)		CGAAGGCGAGGAATGATGGTG	0.567													24	32					0	0	0.002780	0	0
SIPA1L1	26037	broad.mit.edu	37	14	72191409	72191409	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:72191409G>A	uc001xms.2	+	17	4882	c.4534G>A	c.(4534-4536)GAA>AAA	p.E1512K	SIPA1L1_uc001xmt.2_Missense_Mutation_p.E1491K|SIPA1L1_uc001xmu.2_Missense_Mutation_p.E1491K|SIPA1L1_uc001xmv.2_Missense_Mutation_p.E1512K|SIPA1L1_uc010ttm.1_Missense_Mutation_p.E966K|SIPA1L1_uc001xmw.2_Missense_Mutation_p.E277K	NM_015556	NP_056371	O43166	SI1L1_HUMAN	signal-induced proliferation-associated 1 like	1512					actin cytoskeleton reorganization|activation of Rap GTPase activity|regulation of dendritic spine morphogenesis	cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane|synaptosome	GTPase activator activity			ovary(3)|breast(1)	4				all cancers(60;0.00169)|BRCA - Breast invasive adenocarcinoma(234;0.00912)|OV - Ovarian serous cystadenocarcinoma(108;0.0109)		CGATGGCAATGAAATAGCCCA	0.493													17	26					0	0	0.014323	0	0
SIPA1L1	26037	broad.mit.edu	37	14	72202035	72202035	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:72202035C>T	uc001xms.2	+	20	5461	c.5113C>T	c.(5113-5115)CGC>TGC	p.R1705C	SIPA1L1_uc001xmt.2_Missense_Mutation_p.R1684C|SIPA1L1_uc001xmu.2_Missense_Mutation_p.R1684C|SIPA1L1_uc001xmv.2_Missense_Mutation_p.R1705C|SIPA1L1_uc010ttm.1_Missense_Mutation_p.R1159C|SIPA1L1_uc001xmw.2_Missense_Mutation_p.R470C	NM_015556	NP_056371	O43166	SI1L1_HUMAN	signal-induced proliferation-associated 1 like	1705					actin cytoskeleton reorganization|activation of Rap GTPase activity|regulation of dendritic spine morphogenesis	cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane|synaptosome	GTPase activator activity			ovary(3)|breast(1)	4				all cancers(60;0.00169)|BRCA - Breast invasive adenocarcinoma(234;0.00912)|OV - Ovarian serous cystadenocarcinoma(108;0.0109)		TGAAAACCATCGCCCCTTGAG	0.507													25	106					0	0	0.010818	0	0
RGS6	9628	broad.mit.edu	37	14	72985178	72985178	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:72985178C>T	uc001xna.3	+	15	1734	c.1211C>T	c.(1210-1212)TCT>TTT	p.S404F	RGS6_uc010ttn.1_Missense_Mutation_p.S404F|RGS6_uc001xmx.3_Missense_Mutation_p.S404F|RGS6_uc010tto.1_RNA|RGS6_uc001xmy.3_Missense_Mutation_p.S404F|RGS6_uc010ttp.1_Missense_Mutation_p.S335F|RGS6_uc001xmz.1_Missense_Mutation_p.S265F	NM_004296	NP_004287	P49758	RGS6_HUMAN	regulator of G-protein signalling 6	404	RGS.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|signal transducer activity			upper_aerodigestive_tract(1)|lung(1)|skin(1)	3				all cancers(60;0.00309)|BRCA - Breast invasive adenocarcinoma(234;0.0281)|STAD - Stomach adenocarcinoma(64;0.0302)|OV - Ovarian serous cystadenocarcinoma(108;0.0476)		AACCTGGATTCTCACAGCTAT	0.453													22	21					0	0	0.010504	0	0
PAPLN	89932	broad.mit.edu	37	14	73735314	73735314	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:73735314G>A	uc010ttx.1	+	25	3713	c.3550G>A	c.(3550-3552)GAT>AAT	p.D1184N	PAPLN_uc001xnw.3_Missense_Mutation_p.D1157N|PAPLN_uc010arl.2_RNA|PAPLN_uc010ttw.1_Intron|PAPLN_uc010tty.1_Missense_Mutation_p.D1168N|PAPLN_uc010arm.2_Missense_Mutation_p.D383N|PAPLN_uc010arn.2_Intron	NM_173462	NP_775733	O95428	PPN_HUMAN	papilin	1184	Ig-like C2-type 3.					proteinaceous extracellular matrix	metalloendopeptidase activity|serine-type endopeptidase inhibitor activity|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(234;0.00394)|OV - Ovarian serous cystadenocarcinoma(108;0.0468)		CCAGTCCCCAGATGGCACGCT	0.637													26	59					0	0	0.006320	0	0
HEATR4	399671	broad.mit.edu	37	14	73976137	73976137	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:73976137G>A	uc010tub.1	-	8	1921	c.1599C>T	c.(1597-1599)GCC>GCT	p.A533A	HEATR4_uc010tua.1_Silent_p.A486A	NM_203309	NP_976054			HEAT repeat containing 4											ovary(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.00386)|OV - Ovarian serous cystadenocarcinoma(108;0.0719)		CAGCCTCTAGGGCAGGCAGTA	0.507													12	60					0	0	0.003163	0	0
C14orf115	55237	broad.mit.edu	37	14	74824241	74824241	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:74824241C>T	uc001xpw.3	+	2	946	c.755C>T	c.(754-756)CCT>CTT	p.P252L		NM_018228	NP_060698	Q9H8Y1	VRTN_HUMAN	hypothetical protein LOC55237	252					transposition, DNA-mediated		DNA binding|transposase activity				0				BRCA - Breast invasive adenocarcinoma(234;0.00147)		GAAGGTGCCCCTGGCGTGGCC	0.652													22	29					0	0	0.003330	0	0
LTBP2	4053	broad.mit.edu	37	14	75017968	75017968	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:75017968C>T	uc001xqa.2	-	7	1872	c.1485G>A	c.(1483-1485)CGG>CGA	p.R495R		NM_000428	NP_000419	Q14767	LTBP2_HUMAN	latent transforming growth factor beta binding	495					protein secretion|protein targeting|transforming growth factor beta receptor signaling pathway	extracellular space|proteinaceous extracellular matrix	calcium ion binding|growth factor binding			liver(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(234;0.00219)|READ - Rectum adenocarcinoma(1;0.0649)		CCACCCCGCCCCGCACCTGGG	0.682													10	5					0	0	0.008291	0	0
LTBP2	4053	broad.mit.edu	37	14	75052711	75052711	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:75052711C>T	uc001xqa.2	-	3	1063	c.676G>A	c.(676-678)GAA>AAA	p.E226K		NM_000428	NP_000419	Q14767	LTBP2_HUMAN	latent transforming growth factor beta binding	226					protein secretion|protein targeting|transforming growth factor beta receptor signaling pathway	extracellular space|proteinaceous extracellular matrix	calcium ion binding|growth factor binding			liver(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(234;0.00219)|READ - Rectum adenocarcinoma(1;0.0649)		GGGTCAAATTCCTCATCGGGA	0.682													7	5					0	0	0.001984	0	0
YLPM1	56252	broad.mit.edu	37	14	75264365	75264365	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:75264365C>T	uc001xqj.3	+	5	2489	c.2365C>T	c.(2365-2367)CGC>TGC	p.R789C	YLPM1_uc001xql.3_RNA	NM_019589	NP_062535	P49750	YLPM1_HUMAN	YLP motif containing 1	594					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear speck				ovary(2)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(43;0.238)	BRCA - Breast invasive adenocarcinoma(234;0.00162)		TGAAGGAAATCGCCCCGATGG	0.488													5	6					0	0	0.000602	0	0
MLH3	27030	broad.mit.edu	37	14	75513753	75513753	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:75513753G>A	uc001xrd.1	-	2	2822	c.2606C>T	c.(2605-2607)TCA>TTA	p.S869L	MLH3_uc001xre.1_Missense_Mutation_p.S869L|MLH3_uc010tuy.1_RNA	NM_001040108	NP_001035197	Q9UHC1	MLH3_HUMAN	mutL homolog 3 isoform 1	869					mismatch repair|reciprocal meiotic recombination	chiasma|MutLbeta complex|synaptonemal complex	ATP binding|ATPase activity|mismatched DNA binding|protein binding|satellite DNA binding			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(234;0.00688)		TGATTCAGATGACTTCTCAAG	0.383								MMR					22	123					0	0	0.002780	0	0
ESRRB	2103	broad.mit.edu	37	14	76964706	76964706	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:76964706G>A	uc001xsq.1	+	7	1274	c.1207G>A	c.(1207-1209)GCC>ACC	p.A403T	ESRRB_uc001xsr.2_Missense_Mutation_p.A403T|ESRRB_uc001xso.2_RNA	NM_004452	NP_004443	A2VDJ2	A2VDJ2_HUMAN	estrogen-related receptor beta	403						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(234;0.0213)		GCGGCAGACGGCCGCCAAGGC	0.632													5	11					0	0	0.001168	0	0
ANGEL1	23357	broad.mit.edu	37	14	77257025	77257025	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:77257025G>A	uc001xsv.2	-	9	1894	c.1781C>T	c.(1780-1782)CCA>CTA	p.P594L	ANGEL1_uc010tvf.1_Intron	NM_015305	NP_056120	Q9UNK9	ANGE1_HUMAN	angel homolog 1	594										ovary(2)|central_nervous_system(1)|skin(1)	4			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0285)		AAGACCCAATGGCATTGTAGT	0.532													24	24					0	0	0.002780	0	0
TMEM63C	57156	broad.mit.edu	37	14	77705801	77705801	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:77705801G>A	uc001xtf.2	+	11	984	c.772G>A	c.(772-774)GAC>AAC	p.D258N	TMEM63C_uc010asq.1_Missense_Mutation_p.D258N	NM_020431	NP_065164	Q9P1W3	TM63C_HUMAN	transmembrane protein 63C	258						integral to membrane					0			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0342)		CTTCTGCTACGACGTCAGGAA	0.622													26	39					0	0	0.007291	0	0
VIPAR	63894	broad.mit.edu	37	14	77901727	77901727	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:77901727G>A	uc001xtt.1	-	15	1260	c.922C>T	c.(922-924)CGC>TGC	p.R308C	VIPAR_uc001xtu.1_Missense_Mutation_p.R308C|VIPAR_uc010tvj.1_Missense_Mutation_p.R259C|VIPAR_uc001xtv.1_Missense_Mutation_p.R308C	NM_022067	NP_071350	Q9H9C1	VIPAR_HUMAN	hypothetical protein LOC63894	308					endosome to lysosome transport|intracellular protein transport|regulation of transcription, DNA-dependent|transcription, DNA-dependent	early endosome|late endosome|recycling endosome	protein binding			central_nervous_system(1)	1						TCTAGATGGCGATCATTTGCC	0.448													10	62					0	0	0.008291	0	0
SPTLC2	9517	broad.mit.edu	37	14	77978671	77978671	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:77978671C>T	uc001xub.2	-	12	1833	c.1645G>A	c.(1645-1647)GAC>AAC	p.D549N		NM_004863	NP_004854	O15270	SPTC2_HUMAN	serine palmitoyltransferase, long chain base	549						integral to membrane|serine C-palmitoyltransferase complex	pyridoxal phosphate binding|serine C-palmitoyltransferase activity|transferase activity, transferring nitrogenous groups			upper_aerodigestive_tract(1)|ovary(1)	2			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0346)	L-Serine(DB00133)|Pyridoxal Phosphate(DB00114)	AAGGGCCTGTCCAGTAGAGGT	0.493													9	67					0	0	0.004482	0	0
ADCK1	57143	broad.mit.edu	37	14	78365596	78365596	+	Silent	SNP	T	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:78365596T>C	uc001xui.2	+	6	835	c.736T>C	c.(736-738)TTG>CTG	p.L246L	ADCK1_uc010tvo.1_RNA|ADCK1_uc001xuj.2_Silent_p.L178L|ADCK1_uc001xuk.1_Silent_p.L120L	NM_020421	NP_065154	Q86TW2	ADCK1_HUMAN	aarF domain containing kinase 1 isoform a	253	Protein kinase.					extracellular region	ATP binding|protein serine/threonine kinase activity			stomach(2)|ovary(1)	3			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0376)		TTTTGACTTCTTGAAGGTAGG	0.507													18	72					0	0	0.014323	0	0
NRXN3	9369	broad.mit.edu	37	14	79175599	79175599	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:79175599C>T	uc001xun.2	+	4	633	c.142C>T	c.(142-144)CGC>TGC	p.R48C	NRXN3_uc001xum.1_RNA|NRXN3_uc010asv.1_Missense_Mutation_p.R182C	NM_004796	NP_004787	Q9Y4C0	NRX3A_HUMAN	neurexin 3 isoform 1 precursor	421	Laminin G-like 2.|Extracellular (Potential).				axon guidance|cell adhesion	integral to plasma membrane	metal ion binding|receptor activity			ovary(3)|upper_aerodigestive_tract(2)|pancreas(2)|central_nervous_system(1)|breast(1)|skin(1)	10		Renal(4;0.00876)		BRCA - Breast invasive adenocarcinoma(234;0.00544)|Kidney(3;0.029)|KIRC - Kidney renal clear cell carcinoma(182;0.223)		GGAGCTGTCTCGCCTGGCCCG	0.458													23	34					0	0	0.010818	0	0
NRXN3	9369	broad.mit.edu	37	14	79175824	79175824	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:79175824G>A	uc001xun.2	+	4	858	c.367G>A	c.(367-369)GAT>AAT	p.D123N	NRXN3_uc001xum.1_RNA|NRXN3_uc010asv.1_Missense_Mutation_p.D257N	NM_004796	NP_004787	Q9Y4C0	NRX3A_HUMAN	neurexin 3 isoform 1 precursor	496	Extracellular (Potential).|Laminin G-like 3.				axon guidance|cell adhesion	integral to plasma membrane	metal ion binding|receptor activity			ovary(3)|upper_aerodigestive_tract(2)|pancreas(2)|central_nervous_system(1)|breast(1)|skin(1)	10		Renal(4;0.00876)		BRCA - Breast invasive adenocarcinoma(234;0.00544)|Kidney(3;0.029)|KIRC - Kidney renal clear cell carcinoma(182;0.223)		AGAGAGGAAGGATGCTCGGAG	0.517													29	49					0	0	0.007291	0	0
TSHR	7253	broad.mit.edu	37	14	81609650	81609650	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:81609650C>T	uc001xvd.1	+	10	1404	c.1248C>T	c.(1246-1248)TTC>TTT	p.F416F		NM_000369	NP_000360	P16473	TSHR_HUMAN	thyroid stimulating hormone receptor isoform 1	416	Helical; Name=1; (Potential).				cell-cell signaling|positive regulation of cell proliferation	integral to plasma membrane	protein binding|thyroid-stimulating hormone receptor activity			thyroid(289)|ovary(5)|lung(3)|kidney(1)|skin(1)	299				BRCA - Breast invasive adenocarcinoma(234;0.0402)	Thyrotropin Alfa(DB00024)	GCTACAAGTTCCTGAGAATTG	0.502			Mis		toxic thyroid adenoma	thyroid  adenoma	Hereditary nonautoimmune hyperthyroidism; subclinical hypothyroidism 						18	113					0	0	0.012319	0	0
GTF2A1	2957	broad.mit.edu	37	14	81658868	81658868	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:81658868C>T	uc001xvf.1	-	7	1360	c.928G>A	c.(928-930)GAA>AAA	p.E310K	GTF2A1_uc010atb.1_Missense_Mutation_p.E260K|GTF2A1_uc001xvg.1_Missense_Mutation_p.E271K	NM_015859	NP_056943	P52655	TF2AA_HUMAN	TFIIA alpha, p55 isoform 1	310					regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|viral reproduction	cytoplasm|transcription factor TFIIA complex	DNA binding|protein binding|protein heterodimerization activity|TBP-class protein binding|transcription coactivator activity			breast(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.0287)		CTTActtcttccacctgccca	0.149													11	97					0	0	0.010729	0	0
STON2	85439	broad.mit.edu	37	14	81743923	81743923	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:81743923C>T	uc010tvu.1	-	4	1933	c.1732G>A	c.(1732-1734)GAA>AAA	p.E578K	STON2_uc001xvk.1_Missense_Mutation_p.E578K|STON2_uc010tvt.1_Missense_Mutation_p.E375K	NM_033104	NP_149095	Q8WXE9	STON2_HUMAN	stonin 2	578	MHD.				endocytosis|intracellular protein transport|regulation of endocytosis	clathrin adaptor complex|nucleolus	protein binding			skin(3)|pancreas(2)	5				BRCA - Breast invasive adenocarcinoma(234;0.0348)		CCAGAGAATTCATCTCTGACA	0.498													7	43					0	0	0.001984	0	0
FLRT2	23768	broad.mit.edu	37	14	86089609	86089609	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:86089609G>A	uc001xvr.2	+	2	2518	c.1751G>A	c.(1750-1752)CGG>CAG	p.R584Q	FLRT2_uc010atd.2_Missense_Mutation_p.R584Q	NM_013231	NP_037363	O43155	FLRT2_HUMAN	fibronectin leucine rich transmembrane protein 2	584	Cytoplasmic (Potential).				cell adhesion	integral to plasma membrane|proteinaceous extracellular matrix	protein binding, bridging|receptor signaling protein activity			ovary(3)|haematopoietic_and_lymphoid_tissue(1)	4				BRCA - Breast invasive adenocarcinoma(234;0.0319)		CGGGGCCGGCGGAAAGATGAT	0.493													38	55					0	0	0.005524	0	0
KCNK10	54207	broad.mit.edu	37	14	88729611	88729611	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:88729611C>T	uc001xwo.2	-	2	779	c.322G>A	c.(322-324)GAG>AAG	p.E108K	KCNK10_uc001xwm.2_Missense_Mutation_p.E113K|KCNK10_uc001xwn.2_Missense_Mutation_p.E113K	NM_021161	NP_066984	P57789	KCNKA_HUMAN	potassium channel, subfamily K, member 10	108					signal transduction	integral to membrane	potassium channel activity|voltage-gated ion channel activity			ovary(2)|skin(2)|pancreas(1)	5						TCCGCCTTCTCCAAGGCGATG	0.567													9	17					0	0	0.003163	0	0
KCNK10	54207	broad.mit.edu	37	14	88729615	88729616	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:88729615_88729616GG>AA	uc001xwo.2	-	2	774_775	c.317_318CC>TT	c.(316-318)GCC>GTT	p.A106V	KCNK10_uc001xwm.2_Missense_Mutation_p.A111V|KCNK10_uc001xwn.2_Missense_Mutation_p.A111V	NM_021161	NP_066984	P57789	KCNKA_HUMAN	potassium channel, subfamily K, member 10	106					signal transduction	integral to membrane	potassium channel activity|voltage-gated ion channel activity			ovary(2)|skin(2)|pancreas(1)	5						CCTTCTCCAAGGCGATGGTATT	0.564													7	17					0	0	0.004672	0	0
C14orf102	55051	broad.mit.edu	37	14	90755487	90755487	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:90755487G>A	uc001xyi.1	-	11	2263	c.2232C>T	c.(2230-2232)GTC>GTT	p.V744V	C14orf102_uc010atp.1_Silent_p.V249V|C14orf102_uc001xyj.1_Silent_p.V513V|C14orf102_uc001xyk.1_5'UTR	NM_017970	NP_060440	Q9H7Z3	CN102_HUMAN	hypothetical protein LOC55051 isoform 1	744							protein binding			ovary(2)|lung(1)	3		all_cancers(154;0.118)		COAD - Colon adenocarcinoma(157;0.218)		GGCACCAAATGACCTACAGGG	0.438													45	82					0	0	0.009718	0	0
TTC7B	145567	broad.mit.edu	37	14	91123621	91123621	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:91123621G>A	uc001xyp.2	-	11	1360	c.1238C>T	c.(1237-1239)TCT>TTT	p.S413F	TTC7B_uc010ats.2_RNA	NM_001010854	NP_001010854	Q86TV6	TTC7B_HUMAN	tetratricopeptide repeat domain 7B	413	TPR 4.						binding			ovary(2)	2		Melanoma(154;0.222)				GGCACGGGCAGACTTGGCAAG	0.542													11	27					0	0	0.010729	0	0
CCDC88C	440193	broad.mit.edu	37	14	91749831	91749831	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:91749831G>A	uc010aty.2	-	26	4571	c.4472C>T	c.(4471-4473)TCC>TTC	p.S1491F	CCDC88C_uc001xzj.2_Missense_Mutation_p.S15F|CCDC88C_uc001xzi.2_5'UTR	NM_001080414	NP_001073883	Q9P219	DAPLE_HUMAN	DVL-binding protein DAPLE	1491					microtubule cytoskeleton organization|protein destabilization|protein homooligomerization|regulation of protein phosphorylation|Wnt receptor signaling pathway	cytoplasm|insoluble fraction	microtubule binding|PDZ domain binding|protein self-association			ovary(3)	3		all_cancers(154;0.0468)				TCTGTGTGGGGAGCCTCGCTT	0.602													5	8					0	0	0.001984	0	0
CCDC88C	440193	broad.mit.edu	37	14	91760555	91760556	+	Missense_Mutation	DNP	CT	TA	TA			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:91760555_91760556CT>TA	uc010aty.2	-	23	4172_4173	c.4073_4074AG>TA	c.(4072-4074)GAG>GTA	p.E1358V		NM_001080414	NP_001073883	Q9P219	DAPLE_HUMAN	DVL-binding protein DAPLE	1358	Potential.				microtubule cytoskeleton organization|protein destabilization|protein homooligomerization|regulation of protein phosphorylation|Wnt receptor signaling pathway	cytoplasm|insoluble fraction	microtubule binding|PDZ domain binding|protein self-association			ovary(3)	3		all_cancers(154;0.0468)				GCTCCTTGTTCTCCATGTTCTG	0.545													56	86					0	0	0.004672	0	0
CCDC88C	440193	broad.mit.edu	37	14	91875016	91875016	+	Missense_Mutation	SNP	T	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:91875016T>A	uc010aty.2	-	3	356	c.257A>T	c.(256-258)AAG>ATG	p.K86M	CCDC88C_uc010twk.1_Missense_Mutation_p.K50M|CCDC88C_uc001xzl.3_Missense_Mutation_p.K86M	NM_001080414	NP_001073883	Q9P219	DAPLE_HUMAN	DVL-binding protein DAPLE	86					microtubule cytoskeleton organization|protein destabilization|protein homooligomerization|regulation of protein phosphorylation|Wnt receptor signaling pathway	cytoplasm|insoluble fraction	microtubule binding|PDZ domain binding|protein self-association			ovary(3)	3		all_cancers(154;0.0468)				GTAGTAGGTCTTAATGTTTCT	0.483													5	28					0	0	0.000602	0	0
CATSPERB	79820	broad.mit.edu	37	14	92136311	92136311	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:92136311C>T	uc001xzs.1	-	14	1274	c.1134G>A	c.(1132-1134)AGG>AGA	p.R378R	CATSPERB_uc010aub.1_5'UTR	NM_024764	NP_079040	Q9H7T0	CTSRB_HUMAN	cation channel, sperm-associated, beta	378					cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				breast(2)|skin(2)|ovary(1)	5		all_cancers(154;0.0663)|all_epithelial(191;0.236)				TGGCAGTTTTCCTGACCTAGG	0.363													26	36					0	0	0.005443	0	0
FBLN5	10516	broad.mit.edu	37	14	92343975	92343975	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:92343975G>A	uc001xzx.3	-	10	1514	c.1041C>T	c.(1039-1041)ACC>ACT	p.T347T	FBLN5_uc010aud.2_Silent_p.T352T|FBLN5_uc010aue.2_Silent_p.T388T|FBLN5_uc001xzw.2_5'Flank	NM_006329	NP_006320	Q9UBX5	FBLN5_HUMAN	fibulin 5 precursor	347					cell-matrix adhesion|elastic fiber assembly|protein localization at cell surface|regulation of removal of superoxide radicals	extracellular space|proteinaceous extracellular matrix|soluble fraction	calcium ion binding|integrin binding|protein C-terminus binding			ovary(3)|upper_aerodigestive_tract(1)|lung(1)|skin(1)	6		all_cancers(154;0.0722)				GGTACAAGATGGTAAAGGGCT	0.547													33	22					0	0	0.004289	0	0
FBLN5	10516	broad.mit.edu	37	14	92403309	92403309	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:92403309C>T	uc001xzx.3	-	4	834	c.361G>A	c.(361-363)GAA>AAA	p.E121K	FBLN5_uc010aud.2_Missense_Mutation_p.E126K|FBLN5_uc010aue.2_Missense_Mutation_p.E162K	NM_006329	NP_006320	Q9UBX5	FBLN5_HUMAN	fibulin 5 precursor	121					cell-matrix adhesion|elastic fiber assembly|protein localization at cell surface|regulation of removal of superoxide radicals	extracellular space|proteinaceous extracellular matrix|soluble fraction	calcium ion binding|integrin binding|protein C-terminus binding			ovary(3)|upper_aerodigestive_tract(1)|lung(1)|skin(1)	6		all_cancers(154;0.0722)				TGGTTGCTTTCATCCATCTGG	0.522													41	65					0	0	0.008740	0	0
KIAA1409	57578	broad.mit.edu	37	14	93994983	93994983	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:93994983G>A	uc001ybv.1	+	6	595	c.512G>A	c.(511-513)AGG>AAG	p.R171K	KIAA1409_uc001ybs.1_Missense_Mutation_p.R171K|KIAA1409_uc001ybu.1_Missense_Mutation_p.R109K	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	348						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		TGCAGCGAGAGGATTGCAGGG	0.378													15	28					0	0	0.004007	0	0
KIAA1409	57578	broad.mit.edu	37	14	94071282	94071282	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:94071282C>T	uc001ybv.1	+	24	3347	c.3264C>T	c.(3262-3264)CTC>CTT	p.L1088L	KIAA1409_uc001ybs.1_Intron	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		CTCCAGCTCTCGGTGGGACAC	0.473													5	6					0	0	0.001168	0	0
SERPINA10	51156	broad.mit.edu	37	14	94752521	94752521	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:94752521C>T	uc001yct.2	-	4	1533	c.1067G>A	c.(1066-1068)GGA>GAA	p.G356E	SERPINA10_uc001ycu.3_Missense_Mutation_p.G356E	NM_016186	NP_057270	Q9UK55	ZPI_HUMAN	serine (or cysteine) proteinase inhibitor, clade	356					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|skin(1)	3		all_cancers(154;0.105)		Epithelial(152;0.135)|COAD - Colon adenocarcinoma(157;0.207)|all cancers(159;0.221)		TCTTCTGATTCCCATCTGCCT	0.433													14	45					0	0	0.002450	0	0
SERPINA11	256394	broad.mit.edu	37	14	94914760	94914760	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:94914760C>T	uc001ydd.1	-	2	412	c.352G>A	c.(352-354)GGC>AGC	p.G118S		NM_001080451	NP_001073920	Q86U17	SPA11_HUMAN	serpin peptidase inhibitor, clade A (alpha-1	118					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			kidney(1)	1				COAD - Colon adenocarcinoma(157;0.211)		CTCCGGAAGCCCTGGTGGATG	0.587													63	74					0	0	0.014410	0	0
SERPINA4	5267	broad.mit.edu	37	14	95033528	95033528	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:95033528G>A	uc001ydk.2	+	3	937	c.871G>A	c.(871-873)GAG>AAG	p.E291K	SERPINA4_uc010avd.2_Missense_Mutation_p.E328K|SERPINA4_uc001ydl.2_Missense_Mutation_p.E291K	NM_006215	NP_006206	P29622	KAIN_HUMAN	serine (or cysteine) proteinase inhibitor, clade	291					regulation of proteolysis	extracellular space	serine-type endopeptidase inhibitor activity			ovary(3)|skin(1)	4				COAD - Colon adenocarcinoma(157;0.211)		GGAGATTGAAGAGGTTCTGAC	0.463													7	22					0	0	0.001984	0	0
SERPINA5	5104	broad.mit.edu	37	14	95053777	95053777	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:95053777G>A	uc001ydm.2	+	3	288	c.78G>A	c.(76-78)GAG>GAA	p.E26E	SERPINA5_uc010ave.2_Silent_p.E26E|SERPINA5_uc001ydn.1_Silent_p.E26E	NM_000624	NP_000615	P05154	IPSP_HUMAN	serine (or cysteine) proteinase inhibitor, clade	26					fusion of sperm to egg plasma membrane|regulation of proteolysis|spermatogenesis	extracellular region|membrane|protein complex	acrosin binding|heparin binding|protease binding|serine-type endopeptidase inhibitor activity			ovary(2)	2				COAD - Colon adenocarcinoma(157;0.21)	Drotrecogin alfa(DB00055)|Urokinase(DB00013)	ACCCCCGGGAGATGAAGAAGA	0.597													23	53					0	0	0.012319	0	0
SERPINA5	5104	broad.mit.edu	37	14	95053780	95053780	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:95053780G>A	uc001ydm.2	+	3	291	c.81G>A	c.(79-81)ATG>ATA	p.M27I	SERPINA5_uc010ave.2_Missense_Mutation_p.M27I|SERPINA5_uc001ydn.1_Missense_Mutation_p.M27I	NM_000624	NP_000615	P05154	IPSP_HUMAN	serine (or cysteine) proteinase inhibitor, clade	27					fusion of sperm to egg plasma membrane|regulation of proteolysis|spermatogenesis	extracellular region|membrane|protein complex	acrosin binding|heparin binding|protease binding|serine-type endopeptidase inhibitor activity			ovary(2)	2				COAD - Colon adenocarcinoma(157;0.21)	Drotrecogin alfa(DB00055)|Urokinase(DB00013)	CCCGGGAGATGAAGAAGAGAG	0.612													29	42					0	0	0.007291	0	0
SERPINA5	5104	broad.mit.edu	37	14	95054273	95054273	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:95054273G>A	uc001ydm.2	+	3	784	c.574G>A	c.(574-576)GAT>AAT	p.D192N	SERPINA5_uc010ave.2_Missense_Mutation_p.D192N|SERPINA5_uc001ydn.1_Missense_Mutation_p.D192N	NM_000624	NP_000615	P05154	IPSP_HUMAN	serine (or cysteine) proteinase inhibitor, clade	192					fusion of sperm to egg plasma membrane|regulation of proteolysis|spermatogenesis	extracellular region|membrane|protein complex	acrosin binding|heparin binding|protease binding|serine-type endopeptidase inhibitor activity			ovary(2)	2				COAD - Colon adenocarcinoma(157;0.21)	Drotrecogin alfa(DB00055)|Urokinase(DB00013)	TAAGAACCTCGATAGCAATGC	0.463													43	74					0	0	0.014410	0	0
DICER1	23405	broad.mit.edu	37	14	95570178	95570178	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:95570178G>A	uc001ydw.2	-	22	3737	c.3555C>T	c.(3553-3555)GCC>GCT	p.A1185A	DICER1_uc010avh.1_Silent_p.A83A|DICER1_uc001ydv.2_Silent_p.A1175A|DICER1_uc001ydx.2_Silent_p.A1185A|DICER1_uc001ydy.1_Silent_p.A37A	NM_030621	NP_085124	Q9UPY3	DICER_HUMAN	dicer1	1185					negative regulation of Schwann cell proliferation|negative regulation of transcription from RNA polymerase II promoter|nerve development|neuron projection morphogenesis|peripheral nervous system myelin formation|positive regulation of myelination|positive regulation of Schwann cell differentiation|pre-miRNA processing|production of siRNA involved in RNA interference|targeting of mRNA for destruction involved in RNA interference	cytosol|RNA-induced silencing complex	ATP binding|ATP-dependent helicase activity|double-stranded RNA binding|metal ion binding|protein binding|ribonuclease III activity			skin(2)|ovary(1)|pancreas(1)|lung(1)	5		all_cancers(154;0.0621)|all_epithelial(191;0.223)		Epithelial(152;0.211)|COAD - Colon adenocarcinoma(157;0.215)		AACTGCCATTGGCGAGATTTT	0.423			Mis F|N			pleuropulmonary blastoma			DICER_1_syndrome_|Familial_Multinodular_Goiter_				28	38					0	0	0.007291	0	0
TCL1B	9623	broad.mit.edu	37	14	96152912	96152912	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:96152912C>T	uc001yez.2	+	1	150	c.108C>T	c.(106-108)GTC>GTT	p.V36V	TCL1B_uc001yew.2_Intron|TCL1B_uc001yex.2_Intron|TCL1B_uc010avj.2_Intron|TCL1B_uc001yfa.2_Silent_p.V36V	NM_004918	NP_004909	O95988	TCL1B_HUMAN	T-cell leukemia/lymphoma 1B	36										ovary(1)	1		all_cancers(154;0.103)		COAD - Colon adenocarcinoma(157;0.205)|Epithelial(152;0.248)		TGACTGTGGTCGTGCGGTTCA	0.657													18	26					0	0	0.006122	0	0
TCL1A	8115	broad.mit.edu	37	14	96180377	96180377	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:96180377C>T	uc001yfc.3	-	1	157	c.27G>A	c.(25-27)GAG>GAA	p.E9E	uc001yfd.1_5'Flank|TCL1A_uc001yfb.3_Silent_p.E9E	NM_001098725	NP_001092195	P56279	TCL1A_HUMAN	T-cell leukemia/lymphoma 1A	9					multicellular organismal development	endoplasmic reticulum|microsome				lung(1)	1		all_cancers(154;0.103)		COAD - Colon adenocarcinoma(157;0.205)|Epithelial(152;0.248)		CGGTGACTGCCTCCCCGAGTG	0.657			T	TRA@	T-CLL								31	35					0	0	0.012213	0	0
BDKRB2	624	broad.mit.edu	37	14	96706854	96706854	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:96706854C>T	uc010avm.1	+	3	385	c.189C>T	c.(187-189)TTC>TTT	p.F63F	BDKRB2_uc010avl.1_3'UTR|BDKRB2_uc010twu.1_Silent_p.F36F|BDKRB2_uc001yfg.2_Silent_p.F63F	NM_000623	NP_000614	P30411	BKRB2_HUMAN	bradykinin receptor B2	63	Helical; Name=1; (Potential).				arachidonic acid secretion|elevation of cytosolic calcium ion concentration|transmembrane receptor protein tyrosine kinase signaling pathway	endosome|integral to plasma membrane	bradykinin receptor activity|phosphatidylinositol phospholipase C activity|protease binding|protein heterodimerization activity|type 1 angiotensin receptor binding			ovary(3)|breast(1)|kidney(1)	5		all_cancers(154;0.0678)|Melanoma(154;0.155)|all_epithelial(191;0.179)		COAD - Colon adenocarcinoma(157;0.226)		AGCCCCCCTTCCTCTGGGTGC	0.592													25	102					0	0	0.003954	0	0
AK7	122481	broad.mit.edu	37	14	96904217	96904217	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:96904217G>A	uc001yfn.2	+	6	699	c.655G>A	c.(655-657)GGA>AGA	p.G219R		NM_152327	NP_689540	Q96M32	KAD7_HUMAN	adenylate kinase 7	219	Potential.				cell projection organization	cytosol	adenylate kinase activity|ATP binding|cytidylate kinase activity			ovary(1)	1		all_cancers(154;0.0482)|all_epithelial(191;0.128)|Melanoma(154;0.155)		Epithelial(152;0.134)|COAD - Colon adenocarcinoma(157;0.228)		ACTCCAGTATGGAGCGGAAGG	0.363													20	21					0	0	0.004656	0	0
AK7	122481	broad.mit.edu	37	14	96949428	96949428	+	Missense_Mutation	SNP	G	A	A	rs115365090	by1000genomes	TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:96949428G>A	uc001yfn.2	+	16	1890	c.1846G>A	c.(1846-1848)GAA>AAA	p.E616K		NM_152327	NP_689540	Q96M32	KAD7_HUMAN	adenylate kinase 7	616	Potential.|Glu-rich.				cell projection organization	cytosol	adenylate kinase activity|ATP binding|cytidylate kinase activity			ovary(1)	1		all_cancers(154;0.0482)|all_epithelial(191;0.128)|Melanoma(154;0.155)		Epithelial(152;0.134)|COAD - Colon adenocarcinoma(157;0.228)		TTTAACAGACGAAGAAAAGGC	0.512													25	44					0	0	0.003954	0	0
BCL11B	64919	broad.mit.edu	37	14	99723868	99723868	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:99723868C>T	uc001yga.2	-	2	634	c.367G>A	c.(367-369)GAA>AAA	p.E123K	BCL11B_uc001ygb.2_Missense_Mutation_p.E123K	NM_138576	NP_612808	Q9C0K0	BC11B_HUMAN	B-cell CLL/lymphoma 11B isoform 1	123						nucleus	zinc ion binding			central_nervous_system(8)|large_intestine(1)|lung(1)	10		Melanoma(154;0.0866)|all_epithelial(191;0.241)		COAD - Colon adenocarcinoma(157;0.103)		TGGTCATCTTCGTCGGGGGTG	0.607			T	TLX3	T-ALL								43	51					0	0	0.009718	0	0
BCL11B	64919	broad.mit.edu	37	14	99724148	99724148	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:99724148G>A	uc001yga.2	-	2	354	c.87C>T	c.(85-87)ATC>ATT	p.I29I	BCL11B_uc001ygb.2_Silent_p.I29I	NM_138576	NP_612808	Q9C0K0	BC11B_HUMAN	B-cell CLL/lymphoma 11B isoform 1	29						nucleus	zinc ion binding			central_nervous_system(8)|large_intestine(1)|lung(1)	10		Melanoma(154;0.0866)|all_epithelial(191;0.241)		COAD - Colon adenocarcinoma(157;0.103)		CTTCTTCGAGGATGGCGGCCT	0.592			T	TLX3	T-ALL								8	29					0	0	0.006214	0	0
EVL	51466	broad.mit.edu	37	14	100603959	100603959	+	Missense_Mutation	SNP	C	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:100603959C>A	uc001ygt.2	+	10	1242	c.1003C>A	c.(1003-1005)CCT>ACT	p.P335T	EVL_uc001ygv.2_Missense_Mutation_p.P341T|EVL_uc001ygu.2_Missense_Mutation_p.P337T|EVL_uc010avu.2_Missense_Mutation_p.P194T	NM_016337	NP_057421	Q9UI08	EVL_HUMAN	Enah/Vasp-like	335	EVH2.				actin polymerization or depolymerization|axon guidance|cell surface receptor linked signaling pathway|organ morphogenesis	cytoskeleton|cytosol|focal adhesion|lamellipodium	actin binding|profilin binding|SH3 domain binding			large_intestine(2)|ovary(1)	3		Melanoma(154;0.152)				GGTGGAGAAGCCTGTGTCCTC	0.612													25	23					9.57634e-11	1.03181e-10	0.003330	1	0
DEGS2	123099	broad.mit.edu	37	14	100615378	100615378	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:100615378C>T	uc001ygx.2	-	2	840	c.752G>A	c.(751-753)TGG>TAG	p.W251*		NM_206918	NP_996801	Q6QHC5	DEGS2_HUMAN	degenerative spermatocyte homolog 2, lipid	251					fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	sphingosine hydroxylase activity				0		Melanoma(154;0.212)				GAAGGTGATCCAGTTGAGAGG	0.632													19	96					0	0	0.007413	0	0
BEGAIN	57596	broad.mit.edu	37	14	101005161	101005161	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:101005161C>T	uc010txa.1	-	6	1073	c.927G>A	c.(925-927)GAG>GAA	p.E309E	BEGAIN_uc001yhp.2_Silent_p.E245E|BEGAIN_uc001yhq.2_Silent_p.E309E	NM_001159531	NP_001153003	Q9BUH8	BEGIN_HUMAN	brain-enriched guanylate kinase-associated	309						cytoplasm|membrane	protein binding				0		Melanoma(154;0.212)				CGTGCTCCTTCTCCTCCGACG	0.682													10	17					0	0	0.010729	0	0
MIR323	442897	broad.mit.edu	37	14	101492091	101492091	+	RNA	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:101492091C>T	hsa-mir-323|MI0000807	+			c.23C>T			uc001yjy.1_RNA|MIR758_hsa-mir-758|MI0003757_5'Flank|MIR329-1_hsa-mir-329-1|MI0001725_5'Flank|MIR329-2_hsa-mir-329-2|MI0001726_5'Flank																	0						GAGAGGTGGTCCGTGGCGCGT	0.532													48	79					0	0	0.014410	0	0
DIO3	1735	broad.mit.edu	37	14	102028019	102028019	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:102028019C>T	uc010txq.1	+	1	332	c.108C>T	c.(106-108)CTC>CTT	p.L36L	DIO3OS_uc001ykd.1_5'Flank|uc001yke.2_5'Flank|uc001ykf.2_5'Flank|uc001ykg.2_5'Flank|uc001ykh.3_5'Flank|MIR1247_hsa-mir-1247|MI0006382_5'Flank	NM_001362	NP_001353	P55073	IOD3_HUMAN	deiodinase, iodothyronine, type III	36	Helical; Signal-anchor for type II membrane protein; (Potential).				cellular nitrogen compound metabolic process|hormone biosynthetic process	endosome membrane|integral to membrane|plasma membrane	thyroxine 5'-deiodinase activity|thyroxine 5-deiodinase activity			ovary(1)|central_nervous_system(1)|skin(1)	3		all_neural(303;0.185)				TCTGGCTTCTCGATTTCTTGT	0.662													10	38					0	0	0.010729	0	0
DYNC1H1	1778	broad.mit.edu	37	14	102478443	102478443	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:102478443C>T	uc001yks.2	+	33	7014	c.6850C>T	c.(6850-6852)CTG>TTG	p.L2284L	DYNC1H1_uc001ykt.1_5'Flank	NM_001376	NP_001367	Q14204	DYHC1_HUMAN	cytoplasmic dynein 1 heavy chain 1	2284	AAA 2 (By similarity).				cytoplasmic mRNA processing body assembly|G2/M transition of mitotic cell cycle|microtubule-based movement|mitotic spindle organization|stress granule assembly|transport	centrosome|cytoplasmic dynein complex|cytosol|Golgi apparatus|microtubule	ATP binding|ATPase activity, coupled|microtubule motor activity|protein binding			ovary(7)|central_nervous_system(2)|pancreas(1)	10						CACACACGTGCTGAGAAAGTA	0.498													13	61					0	0	0.004990	0	0
DYNC1H1	1778	broad.mit.edu	37	14	102495923	102495924	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:102495923_102495924CC>TT	uc001yks.2	+	49	9680_9681	c.9516_9517CC>TT	c.(9514-9519)ACCCCT>ACTTCT	p.P3173S		NM_001376	NP_001367	Q14204	DYHC1_HUMAN	cytoplasmic dynein 1 heavy chain 1	3173					cytoplasmic mRNA processing body assembly|G2/M transition of mitotic cell cycle|microtubule-based movement|mitotic spindle organization|stress granule assembly|transport	centrosome|cytoplasmic dynein complex|cytosol|Golgi apparatus|microtubule	ATP binding|ATPase activity, coupled|microtubule motor activity|protein binding			ovary(7)|central_nervous_system(2)|pancreas(1)	10						TGGCCATCACCCCTCGCCACTA	0.53													15	23					0	0	0.004672	0	0
DYNC1H1	1778	broad.mit.edu	37	14	102516140	102516140	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:102516140C>T	uc001yks.2	+	76	13769	c.13605C>T	c.(13603-13605)TCC>TCT	p.S4535S		NM_001376	NP_001367	Q14204	DYHC1_HUMAN	cytoplasmic dynein 1 heavy chain 1	4535					cytoplasmic mRNA processing body assembly|G2/M transition of mitotic cell cycle|microtubule-based movement|mitotic spindle organization|stress granule assembly|transport	centrosome|cytoplasmic dynein complex|cytosol|Golgi apparatus|microtubule	ATP binding|ATPase activity, coupled|microtubule motor activity|protein binding			ovary(7)|central_nervous_system(2)|pancreas(1)	10						ACAGCTGGTCCCTGGAGGAGC	0.607													26	16					0	0	0.004656	0	0
AHNAK2	113146	broad.mit.edu	37	14	105408164	105408164	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:105408164G>A	uc010axc.1	-	7	13744	c.13624C>T	c.(13624-13626)CTC>TTC	p.L4542F	AHNAK2_uc001ypx.2_Missense_Mutation_p.L4442F	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	4542						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			TGCCCTTTGAGGCCGGCTACC	0.632													28	121					0	0	0.005443	0	0
AHNAK2	113146	broad.mit.edu	37	14	105414692	105414692	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:105414692G>A	uc010axc.1	-	7	7216	c.7096C>T	c.(7096-7098)CTC>TTC	p.L2366F	AHNAK2_uc001ypx.2_Missense_Mutation_p.L2266F	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	2366						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			TGAACGCTGAGGTCAGTGGTC	0.652													31	116					0	0	0.010818	0	0
GPR132	29933	broad.mit.edu	37	14	105517529	105517529	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:105517529G>A	uc001yqd.2	-	4	1844	c.945C>T	c.(943-945)TCC>TCT	p.S315S	GPR132_uc001yqc.2_Silent_p.S127S|GPR132_uc001yqe.2_Silent_p.S306S	NM_013345	NP_037477	Q9UNW8	GP132_HUMAN	G protein-coupled receptor 132	315	Cytoplasmic (Potential).				response to stress	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(2)|central_nervous_system(1)	3		all_cancers(154;0.0953)|Melanoma(154;0.155)|all_epithelial(191;0.219)	OV - Ovarian serous cystadenocarcinoma(23;0.00778)|all cancers(16;0.00936)|Epithelial(46;0.0227)	Epithelial(152;0.02)|all cancers(159;0.0419)|OV - Ovarian serous cystadenocarcinoma(161;0.0521)		CTTCTTGGCGGGAATGGTCCG	0.577													7	29					0	0	0.001984	0	0
GPR132	29933	broad.mit.edu	37	14	105518133	105518133	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:105518133G>A	uc001yqd.2	-	4	1240	c.341C>T	c.(340-342)GCC>GTC	p.A114V	GPR132_uc001yqc.2_5'UTR|GPR132_uc001yqe.2_Missense_Mutation_p.A105V	NM_013345	NP_037477	Q9UNW8	GP132_HUMAN	G protein-coupled receptor 132	114	Extracellular (Potential).				response to stress	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(2)|central_nervous_system(1)	3		all_cancers(154;0.0953)|Melanoma(154;0.155)|all_epithelial(191;0.219)	OV - Ovarian serous cystadenocarcinoma(23;0.00778)|all cancers(16;0.00936)|Epithelial(46;0.0227)	Epithelial(152;0.02)|all cancers(159;0.0419)|OV - Ovarian serous cystadenocarcinoma(161;0.0521)		CACCTTGCAGGCCAGCAGGCC	0.607													45	94					0	0	0.014410	0	0
GPR132	29933	broad.mit.edu	37	14	105518156	105518156	+	Missense_Mutation	SNP	G	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:105518156G>C	uc001yqd.2	-	4	1217	c.318C>G	c.(316-318)CAC>CAG	p.H106Q	GPR132_uc001yqc.2_5'UTR|GPR132_uc001yqe.2_Missense_Mutation_p.H97Q	NM_013345	NP_037477	Q9UNW8	GP132_HUMAN	G protein-coupled receptor 132	106	Extracellular (Potential).				response to stress	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(2)|central_nervous_system(1)	3		all_cancers(154;0.0953)|Melanoma(154;0.155)|all_epithelial(191;0.219)	OV - Ovarian serous cystadenocarcinoma(23;0.00778)|all cancers(16;0.00936)|Epithelial(46;0.0227)	Epithelial(152;0.02)|all cancers(159;0.0419)|OV - Ovarian serous cystadenocarcinoma(161;0.0521)		GGGTCCAGCGGTGCTGGTTGC	0.602													51	90					0	0	0.014410	0	0
BRF1	2972	broad.mit.edu	37	14	105688140	105688140	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:105688140C>T	uc001yqp.2	-	11	1523	c.1160G>A	c.(1159-1161)GGT>GAT	p.G387D	BRF1_uc010tyo.1_Missense_Mutation_p.G272D|BRF1_uc010typ.1_Missense_Mutation_p.G272D|BRF1_uc001yqk.2_Translation_Start_Site|BRF1_uc001yql.2_Missense_Mutation_p.G183D|BRF1_uc001yqo.2_Missense_Mutation_p.G149D|BRF1_uc010axg.1_Missense_Mutation_p.G360D|BRF1_uc001yqn.2_Intron|BRF1_uc010axh.1_Intron|BRF1_uc010axi.1_Translation_Start_Site	NM_001519	NP_001510	Q92994	TF3B_HUMAN	transcription initiation factor IIIB isoform 1	387					positive regulation of transcription, DNA-dependent|rRNA transcription|transcription initiation from RNA polymerase III promoter|tRNA transcription	transcription factor TFIIIB complex	translation initiation factor activity|zinc ion binding			large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4		all_cancers(154;0.0231)|all_epithelial(191;0.0694)|Melanoma(154;0.155)	OV - Ovarian serous cystadenocarcinoma(23;0.00753)|all cancers(16;0.00925)|Epithelial(46;0.0221)	Epithelial(152;0.14)		GGGGGCACCACCAAGGAGCTC	0.687													6	9					0	0	0.001984	0	0
ADAM6	8755	broad.mit.edu	37	14	106091374	106091375	+	RNA	DNP	CC	AT	AT			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:106091374_106091375CC>AT	uc010tyt.1	-	3647		c.62133_62134GG>AT			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron					Parts of antibodies, mostly variable regions.												0						TTGAACTGCTCCTCCCGCGGCT	0.594													33	206					0	0	0.004672	0	0
ADAM6	8755	broad.mit.edu	37	14	106208404	106208404	+	RNA	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:106208404C>T	uc010tyt.1	-	3627		c.58810G>A			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Missense_Mutation_p.E32K|uc001ysf.2_Missense_Mutation_p.E32K					Parts of antibodies, mostly variable regions.												0						TTATGCACCTCCACGCCGTCC	0.602													35	112					0	0	0.005524	0	0
ADAM6	8755	broad.mit.edu	37	14	106329491	106329491	+	RNA	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:106329491C>T	uc010tyt.1	-	3591		c.54423G>A			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_5'Flank|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Intron|uc001ysf.2_Intron|uc001ysj.2_5'Flank|uc001ysk.1_5'Flank|uc001ysl.1_5'Flank|uc001ysm.1_Intron|uc001ysn.1_Intron|uc001yso.1_Intron					Parts of antibodies, mostly variable regions.												0						GAATGTCCATCCTCACCCCAC	0.557													4	18					0	0	0.001984	0	0
ADAM6	8755	broad.mit.edu	37	14	106452752	106452752	+	RNA	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:106452752G>A	uc010tyt.1	-	1975		c.38004C>T								Parts of antibodies, mostly variable regions.												0						ACGTGTCCCTGGTCATGGTGA	0.552													36	123					0	0	0.003755	0	0
ADAM6	8755	broad.mit.edu	37	14	106494363	106494363	+	RNA	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:106494363G>A	uc010tyt.1	-	1760		c.34635C>T								Parts of antibodies, mostly variable regions.												0						AGAACCCAGAGAAGGTGCAGG	0.557													17	23					0	0	0.004990	0	0
ADAM6	8755	broad.mit.edu	37	14	106539350	106539350	+	RNA	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:106539350C>T	uc010tyt.1	-	1519		c.31343G>A								Parts of antibodies, mostly variable regions.												0						CACCTCAGCCCCAGACTGCAC	0.542													35	19					0	0	0.008740	0	0
ADAM6	8755	broad.mit.edu	37	14	106757818	106757818	+	RNA	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:106757818C>T	uc010tyt.1	-	472		c.16247G>A								Parts of antibodies, mostly variable regions.												0						CCAGGGCCTTCCCTGGGGGCT	0.537													21	22					0	0	0.003330	0	0
ADAM6	8755	broad.mit.edu	37	14	107170136	107170136	+	RNA	SNP	C	T	T	rs141856656	by1000genomes	TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:107170136C>T	uc010tyt.1	-	39		c.2651G>A								Parts of antibodies, mostly variable regions.												0						AGCATAGCTGCTGAAGGTGCC	0.587													16	80					0	0	0.003163	0	0
ADAM6	8755	broad.mit.edu	37	14	107199186	107199186	+	RNA	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:107199186C>T	uc010tyt.1	-	21		c.1512G>A								Parts of antibodies, mostly variable regions.												0						CTCAGGGACCCTCCAGGCTGG	0.597													23	40					0	0	0.014323	0	0
ADAM6	8755	broad.mit.edu	37	14	107199206	107199206	+	RNA	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:107199206C>T	uc010tyt.1	-	21		c.1492G>A								Parts of antibodies, mostly variable regions.												0						GACCAAGCCTCCCCCAGACTC	0.582													22	33					0	0	0.014323	0	0
ADAM6	8755	broad.mit.edu	37	14	107211187	107211187	+	RNA	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr14:107211187C>T	uc010tyt.1	-	18		c.1154G>A								Parts of antibodies, mostly variable regions.												0						TCAGGGACCCCCCAGGCTGGA	0.622													17	31					0	0	0.007413	0	0
Unknown	0	broad.mit.edu	37	15	20193185	20193185	+	RNA	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:20193185C>T	uc010tyv.1	-	2		c.85G>A								Homo sapiens immunoglobulin heavy chain leader and variable region mRNA, partial cds.																		GACCAAGCCTCCCCCAGACTC	0.567													8	19					0	0	0.004482	0	0
Unknown	0	broad.mit.edu	37	15	20488839	20488839	+	RNA	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:20488839C>T	uc001ytf.1	+	2		c.322C>T								full-length cDNA clone CS0DI026YN18 of Placenta Cot 25-normalized of Homo sapiens (human).																		TCCTGAAGTTCTTGTTTCTGT	0.423													9	38					0	0	0.006214	0	0
NF1P1	440225	broad.mit.edu	37	15	21134583	21134583	+	RNA	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:21134583G>A	uc001ytv.1	-	1		c.43C>T								Human NF1-related locus DNA in A9 mouse DNA background.												0						GACATTGCAAGGACTGCACAG	0.468													3	3					0	0	0.004672	0	0
OR4M2	390538	broad.mit.edu	37	15	22368629	22368629	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:22368629C>T	uc010tzu.1	+	1	54	c.54C>T	c.(52-54)TCC>TCT	p.S18S	LOC727924_uc001yua.2_Intron|LOC727924_uc001yub.1_Intron|OR4N4_uc001yuc.1_Intron	NM_001004719	NP_001004719	Q8NGB6	OR4M2_HUMAN	olfactory receptor, family 4, subfamily M,	18	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		CTGGCCTATCCCAGACTCCAG	0.353													35	67					0	0	0.004878	0	0
OR4N4	283694	broad.mit.edu	37	15	22383336	22383336	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:22383336C>T	uc001yuc.1	+	7	1845	c.864C>T	c.(862-864)ACC>ACT	p.T288T	LOC727924_uc001yub.1_RNA|OR4N4_uc010tzv.1_Silent_p.T288T	NM_001005241	NP_001005241	Q8N0Y3	OR4N4_HUMAN	olfactory receptor, family 4, subfamily N,	288	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)|skin(1)	5		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		TGATTTATACCCTTCGCAACC	0.403													22	44					0	0	0.012319	0	0
Unknown	0	broad.mit.edu	37	15	22473158	22473158	+	RNA	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:22473158G>A	uc001yuj.1	-	2		c.113C>T								Homo sapiens IGH mRNA for immunoglobulin heavy chain VHDJ region, partial cds, clone:H6.																		GCAGGTGAGGGACAGGGTCTC	0.632													8	39					0	0	0.003080	0	0
HERC2P2	400322	broad.mit.edu	37	15	23300012	23300012	+	RNA	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:23300012G>A	uc001yvq.2	-	4		c.1493C>T			HERC2P2_uc001yvo.3_RNA|HERC2P2_uc001yvp.3_RNA					Homo sapiens mRNA for KIAA0393 protein, partial cds.												0						GCTGCACCACGATCGGCAGAG	0.602													8	8					0	0	0.003080	0	0
MKRN3	7681	broad.mit.edu	37	15	23811028	23811028	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:23811028C>T	uc001ywh.3	+	1	575	c.99C>T	c.(97-99)CCC>CCT	p.P33P	MKRN3_uc001ywi.2_Silent_p.P33P|MKRN3_uc010ayi.1_Silent_p.P33P	NM_005664	NP_005655	Q13064	MKRN3_HUMAN	makorin ring finger protein 3	33						ribonucleoprotein complex	ligase activity|nucleic acid binding|zinc ion binding	p.P33P(1)		lung(6)|large_intestine(2)|ovary(2)	10		all_cancers(20;8.44e-25)|all_epithelial(15;3.69e-22)|Lung NSC(15;2.96e-18)|all_lung(15;2.8e-17)|Breast(32;0.000353)|Colorectal(260;0.14)		all cancers(64;3.02e-06)|Epithelial(43;1.94e-05)|BRCA - Breast invasive adenocarcinoma(123;0.0012)		CGGACCTTCCCGTCTGTGAGC	0.682													9	23					0	0	0.004482	0	0
MAGEL2	54551	broad.mit.edu	37	15	23889479	23889479	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:23889479G>A	uc001ywj.3	-	1	1697	c.1602C>T	c.(1600-1602)TTC>TTT	p.F534F		NM_019066	NP_061939			MAGE-like protein 2												0		all_cancers(20;1.78e-24)|all_epithelial(15;7.75e-22)|Lung NSC(15;2.96e-18)|all_lung(15;2.8e-17)|Breast(32;0.000625)|Colorectal(260;0.14)		all cancers(64;1.84e-06)|Epithelial(43;1.2e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00177)		ACCCTAACTTGAACAGAAAAT	0.453													9	23					0	0	0.006214	0	0
MAGEL2	54551	broad.mit.edu	37	15	23889980	23889980	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:23889980C>T	uc001ywj.3	-	1	1196	c.1101G>A	c.(1099-1101)TGG>TGA	p.W367*		NM_019066	NP_061939			MAGE-like protein 2												0		all_cancers(20;1.78e-24)|all_epithelial(15;7.75e-22)|Lung NSC(15;2.96e-18)|all_lung(15;2.8e-17)|Breast(32;0.000625)|Colorectal(260;0.14)		all cancers(64;1.84e-06)|Epithelial(43;1.2e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00177)		TCGGGCCCTCCCAGGCACTCA	0.662													4	18					0	0	0.009096	0	0
C15orf2	23742	broad.mit.edu	37	15	24921258	24921258	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:24921258C>T	uc001ywo.2	+	1	718	c.244C>T	c.(244-246)CTG>TTG	p.L82L		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	82					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		GGCCGCCCCTCTGGGGGTCCT	0.692													9	9					0	0	0.006214	0	0
C15orf2	23742	broad.mit.edu	37	15	24922969	24922969	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:24922969C>T	uc001ywo.2	+	1	2429	c.1955C>T	c.(1954-1956)CCT>CTT	p.P652L		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	652					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		TTTGAGGCTCCTGATGGGCAG	0.502													14	42					0	0	0.001855	0	0
C15orf2	23742	broad.mit.edu	37	15	24923641	24923641	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:24923641C>T	uc001ywo.2	+	1	3101	c.2627C>T	c.(2626-2628)CCT>CTT	p.P876L		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	876					cell differentiation|multicellular organismal development|spermatogenesis			p.P876S(1)		ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		ACCAGTTTTCCTGCACAGGCA	0.507													8	68					0	0	0.003080	0	0
SNURF	8926	broad.mit.edu	37	15	25207265	25207265	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:25207265C>T	uc001ywu.2	+	2	145	c.19C>T	c.(19-21)CGC>TGC	p.R7C	SNRPN_uc001ywp.1_5'UTR|SNRPN_uc001ywq.1_5'UTR|SNRPN_uc001ywr.1_5'UTR|SNRPN_uc001yws.1_5'UTR|SNRPN_uc001ywt.1_5'UTR|SNRPN_uc001ywv.1_5'UTR|SNRPN_uc001yww.1_5'UTR|SNRPN_uc001ywx.1_5'UTR|SNRPN_uc001ywz.1_RNA|PAR-SN_uc001yxa.1_RNA|SNRPN_uc001ywy.1_Missense_Mutation_p.R7C	NM_022804	NP_073715	Q9Y675	SNURF_HUMAN	SNRPN upstream reading frame protein	7						nucleus					0		all_cancers(20;1.4e-21)|Breast(32;0.000625)		all cancers(64;3.48e-07)|Epithelial(43;1.83e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0142)		TTTCAGGGATCGCTTACACCT	0.403													10	25					0	0	0.008291	0	0
TJP1	7082	broad.mit.edu	37	15	30034858	30034858	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:30034858G>A	uc001zcr.2	-	9	1613	c.1138C>T	c.(1138-1140)CCT>TCT	p.P380S	TJP1_uc010azl.2_Missense_Mutation_p.P368S|TJP1_uc001zcq.2_Missense_Mutation_p.P384S|TJP1_uc001zcs.2_Missense_Mutation_p.P380S	NM_003257	NP_003248	Q07157	ZO1_HUMAN	tight junction protein 1 isoform a	380					cell-cell junction assembly|cellular component disassembly involved in apoptosis	basolateral plasma membrane|cell-cell adherens junction|Golgi apparatus|tight junction				ovary(4)|central_nervous_system(1)|pancreas(1)	6		all_lung(180;7.48e-11)|Breast(32;0.000153)		all cancers(64;3.29e-10)|Epithelial(43;5.34e-09)|BRCA - Breast invasive adenocarcinoma(123;0.0034)|GBM - Glioblastoma multiforme(186;0.0139)|Lung(196;0.186)		GGAAGAGAAGGTGTTTGTTTC	0.368													20	61					0	0	0.010504	0	0
TRPM1	4308	broad.mit.edu	37	15	31294043	31294043	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:31294043G>A	uc001zfm.2	-	27	4922	c.4794C>T	c.(4792-4794)TCC>TCT	p.S1598S	TRPM1_uc010azy.2_Silent_p.S1505S|TRPM1_uc001zfl.2_RNA	NM_002420	NP_002411	Q7Z4N2	TRPM1_HUMAN	transient receptor potential cation channel,	1598	Cytoplasmic (Potential).				cellular response to light stimulus|visual perception	integral to plasma membrane	calcium channel activity|receptor activity			ovary(2)|pancreas(1)|skin(1)	4		all_lung(180;1.92e-11)		all cancers(64;3.52e-16)|Epithelial(43;1.65e-11)|GBM - Glioblastoma multiforme(186;3.57e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00533)|COAD - Colon adenocarcinoma(236;0.0609)|Lung(196;0.199)		CAGTTTCTGTGGAAGCTTTCT	0.358													6	17					0	0	0.001168	0	0
TRPM1	4308	broad.mit.edu	37	15	31342674	31342674	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:31342674C>T	uc001zfm.2	-	11	1437	c.1309G>A	c.(1309-1311)GGG>AGG	p.G437R	TRPM1_uc010azy.2_Missense_Mutation_p.G344R|TRPM1_uc001zfl.2_RNA	NM_002420	NP_002411	Q7Z4N2	TRPM1_HUMAN	transient receptor potential cation channel,	437	Extracellular (Potential).				cellular response to light stimulus|visual perception	integral to plasma membrane	calcium channel activity|receptor activity			ovary(2)|pancreas(1)|skin(1)	4		all_lung(180;1.92e-11)		all cancers(64;3.52e-16)|Epithelial(43;1.65e-11)|GBM - Glioblastoma multiforme(186;3.57e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00533)|COAD - Colon adenocarcinoma(236;0.0609)|Lung(196;0.199)		ttcactttccctttcttcttg	0.398													10	16					0	0	0.006214	0	0
OTUD7A	161725	broad.mit.edu	37	15	31862347	31862347	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:31862347C>T	uc001zfq.2	-	2	298	c.205G>A	c.(205-207)GTG>ATG	p.V69M	OTUD7A_uc001zfr.2_Missense_Mutation_p.V69M|OTUD7A_uc001zfs.1_RNA|OTUD7A_uc010baa.1_Missense_Mutation_p.V69M	NM_130901	NP_570971	Q8TE49	OTU7A_HUMAN	OTU domain containing 7A	69						cytoplasm|nucleus	cysteine-type peptidase activity|DNA binding|zinc ion binding			pancreas(1)|skin(1)	2		all_lung(180;1.6e-09)		all cancers(64;2.44e-19)|Epithelial(43;6.82e-14)|GBM - Glioblastoma multiforme(186;1.49e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00189)|Lung(196;0.208)		GCTGTGTGCACCTGGCGGAGC	0.572													9	45					0	0	0.013537	0	0
FMN1	342184	broad.mit.edu	37	15	33359009	33359009	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:33359009C>T	uc001zhf.3	-	1	1077	c.1077G>A	c.(1075-1077)AAG>AAA	p.K359K	FMN1_uc001zhg.2_Silent_p.K359K	NM_001103184	NP_001096654	Q68DA7	FMN1_HUMAN	formin 1	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					actin cytoskeleton organization	actin cytoskeleton|adherens junction|cytoplasm|nucleus	actin binding			ovary(1)	1		all_lung(180;1.14e-07)		all cancers(64;3.05e-15)|Epithelial(43;1.67e-10)|GBM - Glioblastoma multiforme(186;4.95e-05)|BRCA - Breast invasive adenocarcinoma(123;0.0262)		GGTCTGCTCCCTTCGGTTCAG	0.567													32	59					0	0	0.003755	0	0
RYR3	6263	broad.mit.edu	37	15	33954891	33954891	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:33954891C>T	uc001zhi.2	+	35	5230	c.5160C>T	c.(5158-5160)TTC>TTT	p.F1720F	RYR3_uc010bar.2_Silent_p.F1720F	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	1720	4 X approximate repeats.|Cytoplasmic (By similarity).				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		CTGTGGAGTTCCAGTTTGTGC	0.562													10	35					0	0	0.008291	0	0
RYR3	6263	broad.mit.edu	37	15	34032190	34032190	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:34032190C>T	uc001zhi.2	+	51	7884	c.7814C>T	c.(7813-7815)ACC>ATC	p.T2605I	RYR3_uc010bar.2_Missense_Mutation_p.T2605I	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	2605	3.|Cytoplasmic (By similarity).|4 X approximate repeats.				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		CCTATTAACACCATGAAGTGA	0.443													8	21					0	0	0.006214	0	0
RYR3	6263	broad.mit.edu	37	15	34129148	34129148	+	Silent	SNP	C	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:34129148C>G	uc001zhi.2	+	88	11680	c.11610C>G	c.(11608-11610)CTC>CTG	p.L3870L	RYR3_uc010bar.2_Silent_p.L3865L	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	3870					cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		TCTTGGATCTCCTTCAGGACA	0.488													7	15					0	0	0.003080	0	0
RYR3	6263	broad.mit.edu	37	15	34145783	34145783	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:34145783G>A	uc001zhi.2	+	96	13769	c.13699G>A	c.(13699-13701)GGA>AGA	p.G4567R	RYR3_uc010bar.2_Missense_Mutation_p.G4562R	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	4567					cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		AGATCTCTACGGAGCAGAACG	0.488													10	24					0	0	0.013537	0	0
C15orf55	256646	broad.mit.edu	37	15	34646835	34646835	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:34646835G>A	uc001zif.2	+	5	1335	c.1180G>A	c.(1180-1182)GAA>AAA	p.E394K	C15orf55_uc010ucc.1_Missense_Mutation_p.E422K|C15orf55_uc010ucd.1_Missense_Mutation_p.E412K	NM_175741	NP_786883	Q86Y26	NUT_HUMAN	nuclear protein in testis	394						cytoplasm|nucleus			BRD4_ENST00000263377/C15orf55(24)|BRD3/C15orf55(3)	midline_organs(25)|ovary(2)|lung(2)|skin(1)	30		all_lung(180;2.78e-08)		all cancers(64;4.53e-18)|GBM - Glioblastoma multiforme(113;8.29e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0249)		AAAACAAGAGGAAGAAGGGCA	0.517			T	BRD3|BRD4	lethal midline carcinoma								14	72					0	0	0.002450	0	0
ACTC1	70	broad.mit.edu	37	15	35083473	35083473	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:35083473C>T	uc001ziu.1	-	6	1075	c.832G>A	c.(832-834)GAA>AAA	p.E278K	uc001zit.1_Intron	NM_005159	NP_005150	P68032	ACTC_HUMAN	cardiac muscle alpha actin 1 proprotein	278					apoptosis|cardiac muscle tissue morphogenesis|cardiac myofibril assembly|muscle filament sliding|skeletal muscle thin filament assembly	actomyosin, actin part|cytosol|I band	ATP binding|ATPase activity|myosin binding			upper_aerodigestive_tract(1)|ovary(1)	2		all_lung(180;2.3e-08)		all cancers(64;5.83e-19)|GBM - Glioblastoma multiforme(113;1.98e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0244)		TAAGTTGTTTCATGGATGCCA	0.338													17	76					0	0	0.010504	0	0
ACTC1	70	broad.mit.edu	37	15	35085505	35085505	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:35085505G>A	uc001ziu.1	-	3	638	c.395C>T	c.(394-396)CCT>CTT	p.P132L	uc001zit.1_Intron	NM_005159	NP_005150	P68032	ACTC_HUMAN	cardiac muscle alpha actin 1 proprotein	132					apoptosis|cardiac muscle tissue morphogenesis|cardiac myofibril assembly|muscle filament sliding|skeletal muscle thin filament assembly	actomyosin, actin part|cytosol|I band	ATP binding|ATPase activity|myosin binding			upper_aerodigestive_tract(1)|ovary(1)	2		all_lung(180;2.3e-08)		all cancers(64;5.83e-19)|GBM - Glioblastoma multiforme(113;1.98e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0244)		GTACATGGCAGGGACATTGAA	0.572													8	56					0	0	0.008291	0	0
C15orf54	400360	broad.mit.edu	37	15	39544671	39544671	+	Missense_Mutation	SNP	T	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:39544671T>A	uc001zkg.2	+	2	703	c.335T>A	c.(334-336)ATT>AAT	p.I112N		NM_207445	NP_997328	Q8N8G6	CO054_HUMAN	hypothetical protein LOC400360	112											0		all_cancers(109;5.39e-14)|all_epithelial(112;3.14e-12)|Lung NSC(122;9.74e-10)|all_lung(180;2.23e-08)|Melanoma(134;0.091)|Colorectal(260;0.198)		GBM - Glioblastoma multiforme(113;1.19e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0706)		AACCCAGTGATTTCCAGCGGA	0.418													14	46					0	0	0.001855	0	0
THBS1	7057	broad.mit.edu	37	15	39874870	39874870	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:39874870C>T	uc001zkh.2	+	3	723	c.544C>T	c.(544-546)CCC>TCC	p.P182S		NM_003246	NP_003237	P07996	TSP1_HUMAN	thrombospondin 1 precursor	182	TSP N-terminal.				activation of MAPK activity|anti-apoptosis|apoptosis|cell adhesion|cell cycle arrest|cell migration|cellular response to heat|chronic inflammatory response|engulfment of apoptotic cell|immune response|induction of apoptosis|negative regulation of angiogenesis|negative regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|negative regulation of blood vessel endothelial cell migration|negative regulation of caspase activity|negative regulation of cGMP-mediated signaling|negative regulation of dendritic cell antigen processing and presentation|negative regulation of endothelial cell proliferation|negative regulation of fibrinolysis|negative regulation of fibroblast growth factor receptor signaling pathway|negative regulation of focal adhesion assembly|negative regulation of interleukin-12 production|negative regulation of nitric oxide mediated signal transduction|negative regulation of plasma membrane long-chain fatty acid transport|negative regulation of plasminogen activation|peptide cross-linking|platelet activation|platelet degranulation|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of fibroblast migration|positive regulation of macrophage activation|positive regulation of macrophage chemotaxis|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of reactive oxygen species metabolic process|positive regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transforming growth factor-beta1 production|positive regulation of translation|positive regulation of tumor necrosis factor biosynthetic process|response to calcium ion|response to drug|response to glucose stimulus|response to hypoxia|response to magnesium ion|response to progesterone stimulus|sprouting angiogenesis	external side of plasma membrane|extracellular matrix|fibrinogen complex|platelet alpha granule lumen	calcium ion binding|collagen V binding|eukaryotic cell surface binding|fibrinogen binding|fibroblast growth factor 2 binding|fibronectin binding|heparin binding|identical protein binding|integrin binding|laminin binding|low-density lipoprotein particle binding|phosphatidylserine binding|proteoglycan binding|structural molecule activity|transforming growth factor beta binding			ovary(3)|central_nervous_system(3)	6		all_cancers(109;1.35e-17)|all_epithelial(112;2.07e-15)|Lung NSC(122;4.44e-11)|all_lung(180;1.11e-09)|Melanoma(134;0.0574)|Colorectal(260;0.117)|Ovarian(310;0.223)		GBM - Glioblastoma multiforme(113;2.77e-06)|BRCA - Breast invasive adenocarcinoma(123;0.105)	Becaplermin(DB00102)	GTTGGACGTCCCCATCCAAAG	0.562													9	19					0	0	0.008291	0	0
THBS1	7057	broad.mit.edu	37	15	39879662	39879662	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:39879662G>A	uc001zkh.2	+	8	1414	c.1235G>A	c.(1234-1236)CGA>CAA	p.R412Q	THBS1_uc010bbi.2_5'Flank	NM_003246	NP_003237	P07996	TSP1_HUMAN	thrombospondin 1 precursor	412	TSP type-1 1.				activation of MAPK activity|anti-apoptosis|apoptosis|cell adhesion|cell cycle arrest|cell migration|cellular response to heat|chronic inflammatory response|engulfment of apoptotic cell|immune response|induction of apoptosis|negative regulation of angiogenesis|negative regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|negative regulation of blood vessel endothelial cell migration|negative regulation of caspase activity|negative regulation of cGMP-mediated signaling|negative regulation of dendritic cell antigen processing and presentation|negative regulation of endothelial cell proliferation|negative regulation of fibrinolysis|negative regulation of fibroblast growth factor receptor signaling pathway|negative regulation of focal adhesion assembly|negative regulation of interleukin-12 production|negative regulation of nitric oxide mediated signal transduction|negative regulation of plasma membrane long-chain fatty acid transport|negative regulation of plasminogen activation|peptide cross-linking|platelet activation|platelet degranulation|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of fibroblast migration|positive regulation of macrophage activation|positive regulation of macrophage chemotaxis|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of reactive oxygen species metabolic process|positive regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transforming growth factor-beta1 production|positive regulation of translation|positive regulation of tumor necrosis factor biosynthetic process|response to calcium ion|response to drug|response to glucose stimulus|response to hypoxia|response to magnesium ion|response to progesterone stimulus|sprouting angiogenesis	external side of plasma membrane|extracellular matrix|fibrinogen complex|platelet alpha granule lumen	calcium ion binding|collagen V binding|eukaryotic cell surface binding|fibrinogen binding|fibroblast growth factor 2 binding|fibronectin binding|heparin binding|identical protein binding|integrin binding|laminin binding|low-density lipoprotein particle binding|phosphatidylserine binding|proteoglycan binding|structural molecule activity|transforming growth factor beta binding			ovary(3)|central_nervous_system(3)	6		all_cancers(109;1.35e-17)|all_epithelial(112;2.07e-15)|Lung NSC(122;4.44e-11)|all_lung(180;1.11e-09)|Melanoma(134;0.0574)|Colorectal(260;0.117)|Ovarian(310;0.223)		GBM - Glioblastoma multiforme(113;2.77e-06)|BRCA - Breast invasive adenocarcinoma(123;0.105)	Becaplermin(DB00102)	CTCAACAACCGATGTGAGGGC	0.577													8	9					0	0	0.006214	0	0
THBS1	7057	broad.mit.edu	37	15	39885651	39885651	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:39885651G>A	uc001zkh.2	+	19	3228	c.3049G>A	c.(3049-3051)GAA>AAA	p.E1017K	THBS1_uc010bbi.2_Missense_Mutation_p.E489K	NM_003246	NP_003237	P07996	TSP1_HUMAN	thrombospondin 1 precursor	1017	TSP C-terminal.				activation of MAPK activity|anti-apoptosis|apoptosis|cell adhesion|cell cycle arrest|cell migration|cellular response to heat|chronic inflammatory response|engulfment of apoptotic cell|immune response|induction of apoptosis|negative regulation of angiogenesis|negative regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|negative regulation of blood vessel endothelial cell migration|negative regulation of caspase activity|negative regulation of cGMP-mediated signaling|negative regulation of dendritic cell antigen processing and presentation|negative regulation of endothelial cell proliferation|negative regulation of fibrinolysis|negative regulation of fibroblast growth factor receptor signaling pathway|negative regulation of focal adhesion assembly|negative regulation of interleukin-12 production|negative regulation of nitric oxide mediated signal transduction|negative regulation of plasma membrane long-chain fatty acid transport|negative regulation of plasminogen activation|peptide cross-linking|platelet activation|platelet degranulation|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of fibroblast migration|positive regulation of macrophage activation|positive regulation of macrophage chemotaxis|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of reactive oxygen species metabolic process|positive regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transforming growth factor-beta1 production|positive regulation of translation|positive regulation of tumor necrosis factor biosynthetic process|response to calcium ion|response to drug|response to glucose stimulus|response to hypoxia|response to magnesium ion|response to progesterone stimulus|sprouting angiogenesis	external side of plasma membrane|extracellular matrix|fibrinogen complex|platelet alpha granule lumen	calcium ion binding|collagen V binding|eukaryotic cell surface binding|fibrinogen binding|fibroblast growth factor 2 binding|fibronectin binding|heparin binding|identical protein binding|integrin binding|laminin binding|low-density lipoprotein particle binding|phosphatidylserine binding|proteoglycan binding|structural molecule activity|transforming growth factor beta binding			ovary(3)|central_nervous_system(3)	6		all_cancers(109;1.35e-17)|all_epithelial(112;2.07e-15)|Lung NSC(122;4.44e-11)|all_lung(180;1.11e-09)|Melanoma(134;0.0574)|Colorectal(260;0.117)|Ovarian(310;0.223)		GBM - Glioblastoma multiforme(113;2.77e-06)|BRCA - Breast invasive adenocarcinoma(123;0.105)	Becaplermin(DB00102)	CATCAACACCGAAAGGGACGA	0.493													57	125					0	0	0.014410	0	0
FSIP1	161835	broad.mit.edu	37	15	40018827	40018827	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:40018827G>A	uc001zki.2	-	9	1231	c.1013C>T	c.(1012-1014)TCC>TTC	p.S338F		NM_152597	NP_689810	Q8NA03	FSIP1_HUMAN	fibrous sheath interacting protein 1	338										ovary(2)|skin(1)	3		all_cancers(109;2.66e-19)|all_epithelial(112;2.66e-16)|Lung NSC(122;1.5e-11)|all_lung(180;4.03e-10)|Melanoma(134;0.0575)|Ovarian(310;0.0827)|Colorectal(260;0.119)		GBM - Glioblastoma multiforme(113;8.22e-06)|BRCA - Breast invasive adenocarcinoma(123;0.142)		AGAAAAACTGGAAATTGTAGG	0.393													9	29					0	0	0.008291	0	0
EIF2AK4	440275	broad.mit.edu	37	15	40259715	40259715	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:40259715C>T	uc001zkm.1	+	9	1238	c.1188C>T	c.(1186-1188)CCC>CCT	p.P396P	EIF2AK4_uc001zkl.2_Silent_p.P396P|EIF2AK4_uc010bbj.1_Silent_p.P125P	NM_001013703	NP_001013725	Q9P2K8	E2AK4_HUMAN	eukaryotic translation initiation factor 2 alpha	396	Protein kinase 1.				translation	cytosolic ribosome	aminoacyl-tRNA ligase activity|ATP binding|eukaryotic translation initiation factor 2alpha kinase activity|protein homodimerization activity			lung(2)|stomach(1)|skin(1)	4		all_cancers(109;1.05e-19)|all_epithelial(112;4.38e-17)|Lung NSC(122;1.09e-12)|all_lung(180;3.56e-11)|Melanoma(134;0.0575)|Ovarian(310;0.0826)|Colorectal(260;0.119)		GBM - Glioblastoma multiforme(113;5.31e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0616)		ACTCAGGCCCCATCCCTGTGC	0.517													6	32					0	0	0.001168	0	0
C15orf23	90417	broad.mit.edu	37	15	40675107	40675107	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:40675107C>T	uc001zll.2	+	1	186	c.71C>T	c.(70-72)TCC>TTC	p.S24F	C15orf23_uc010ucp.1_Missense_Mutation_p.S24F|C15orf23_uc001zlo.2_Missense_Mutation_p.S24F|C15orf23_uc001zlm.2_RNA|C15orf23_uc001zln.2_RNA	NM_033286	NP_150628	Q9Y448	T4AF1_HUMAN	TRAF4 associated factor 1 isoform a	24						nucleus	protein binding			ovary(1)|skin(1)	2		all_cancers(109;2.34e-14)|all_epithelial(112;9.21e-12)|Lung NSC(122;2.95e-09)|all_lung(180;6.03e-08)|Melanoma(134;0.091)|Colorectal(260;0.198)|Ovarian(310;0.243)		GBM - Glioblastoma multiforme(113;3.39e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0798)		GAGTGCGATTCCCACCCACTT	0.567													23	14					0	0	0.014323	0	0
RPUSD2	27079	broad.mit.edu	37	15	40866035	40866035	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:40866035C>T	uc001zmd.1	+	3	1213	c.1213C>T	c.(1213-1215)CCC>TCC	p.P405S		NM_152260	NP_689473	Q8IZ73	RUSD2_HUMAN	RNA pseudouridylate synthase domain containing	405					pseudouridine synthesis		protein binding|pseudouridine synthase activity|RNA binding			skin(1)	1		all_cancers(109;2.74e-14)|all_epithelial(112;1.64e-11)|Lung NSC(122;6.69e-09)|all_lung(180;1.22e-07)|Melanoma(134;0.091)|Colorectal(260;0.175)|Ovarian(310;0.243)		GBM - Glioblastoma multiforme(113;3.1e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0786)		CGGCTACATTCCCAAGACAAA	0.577													8	38					0	0	0.003080	0	0
RPAP1	26015	broad.mit.edu	37	15	41817242	41817242	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:41817242G>A	uc001zod.2	-	15	2146	c.2022C>T	c.(2020-2022)GCC>GCT	p.A674A	RPAP1_uc001zoc.2_5'Flank	NM_015540	NP_056355	Q9BWH6	RPAP1_HUMAN	RNA polymerase II associated protein 1	674						nucleus	DNA binding|DNA-directed RNA polymerase activity			large_intestine(1)	1		all_cancers(109;6.59e-20)|all_epithelial(112;7.67e-17)|Lung NSC(122;5.34e-11)|all_lung(180;4.17e-10)|Melanoma(134;0.0179)|Ovarian(310;0.143)|Colorectal(260;0.173)		OV - Ovarian serous cystadenocarcinoma(18;2.84e-17)|GBM - Glioblastoma multiforme(113;1.68e-06)|Colorectal(105;0.0163)|BRCA - Breast invasive adenocarcinoma(123;0.117)		ACAGACGGAGGGCCTCGGTGC	0.627													4	40					0	0	0.009096	0	0
MAPKBP1	23005	broad.mit.edu	37	15	42067532	42067532	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:42067532C>T	uc001zok.3	+	2	345	c.59C>T	c.(58-60)TCC>TTC	p.S20F	MAPKBP1_uc001zoj.3_Missense_Mutation_p.S20F|MAPKBP1_uc010bcj.2_5'UTR|MAPKBP1_uc010bci.2_Missense_Mutation_p.S20F|MAPKBP1_uc010udb.1_5'UTR|MAPKBP1_uc010bck.2_5'UTR	NM_001128608	NP_001122080	O60336	MABP1_HUMAN	mitogen-activated protein kinase binding protein	20										central_nervous_system(5)|breast(2)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	10		all_cancers(109;7.71e-14)|all_epithelial(112;5.15e-12)|Lung NSC(122;3.74e-08)|all_lung(180;1.81e-07)|Melanoma(134;0.0262)		OV - Ovarian serous cystadenocarcinoma(18;3.95e-17)|GBM - Glioblastoma multiforme(94;5.71e-07)|Lung(196;0.0436)|BRCA - Breast invasive adenocarcinoma(123;0.203)|LUSC - Lung squamous cell carcinoma(244;0.225)		AGATCTCCATCCATCAAACTG	0.547													14	36					0	0	0.004007	0	0
SPTBN5	51332	broad.mit.edu	37	15	42166142	42166142	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:42166142G>A	uc001zos.2	-	25	5019	c.4686C>T	c.(4684-4686)ATC>ATT	p.I1562I		NM_016642	NP_057726	Q9NRC6	SPTN5_HUMAN	spectrin, beta, non-erythrocytic 5	1597	Spectrin 12.				actin cytoskeleton organization|actin filament capping|axon guidance	cytosol|membrane|spectrin				ovary(1)|central_nervous_system(1)	2		all_cancers(109;1.84e-17)|all_epithelial(112;1.12e-15)|Lung NSC(122;7.6e-10)|all_lung(180;4.15e-09)|Melanoma(134;0.0179)|Ovarian(310;0.143)|Colorectal(260;0.173)		all cancers(2;4.33e-34)|Epithelial(2;1.72e-25)|OV - Ovarian serous cystadenocarcinoma(18;8.32e-20)|GBM - Glioblastoma multiforme(94;4.69e-07)|Colorectal(2;0.00104)|COAD - Colon adenocarcinoma(120;0.0405)|READ - Rectum adenocarcinoma(92;0.0908)		ACTGCTCCACGATGTGTTGGG	0.647													6	22					0	0	0.001168	0	0
PLA2G4D	283748	broad.mit.edu	37	15	42375522	42375522	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:42375522C>T	uc001zox.2	-	8	641	c.546G>A	c.(544-546)AAG>AAA	p.K182K		NM_178034	NP_828848	Q86XP0	PA24D_HUMAN	phospholipase A2, group IVD	182					phospholipid catabolic process	cytoplasmic vesicle membrane|cytosol	metal ion binding|phospholipase A2 activity			large_intestine(1)|skin(1)	2		all_cancers(109;6.37e-17)|all_epithelial(112;3.78e-15)|Lung NSC(122;5.01e-09)|all_lung(180;2.24e-08)|Melanoma(134;0.019)|Ovarian(310;0.143)|Colorectal(260;0.245)		OV - Ovarian serous cystadenocarcinoma(18;4.9e-17)|GBM - Glioblastoma multiforme(94;1.02e-06)		CCAGCTCCAGCTTGTCCTGAT	0.592													16	31					0	0	0.006122	0	0
TTBK2	146057	broad.mit.edu	37	15	43075673	43075673	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:43075673C>T	uc001zqo.2	-	11	1580	c.1141G>A	c.(1141-1143)GAT>AAT	p.D381N	TTBK2_uc010bcy.2_Missense_Mutation_p.D312N|TTBK2_uc001zqp.2_Missense_Mutation_p.D381N|TTBK2_uc010bcz.1_Missense_Mutation_p.D346N	NM_173500	NP_775771	Q6IQ55	TTBK2_HUMAN	tau tubulin kinase 2	381					cell death		ATP binding|protein serine/threonine kinase activity			ovary(2)|lung(2)|stomach(1)|pancreas(1)|skin(1)	7		all_cancers(109;6.11e-16)|all_epithelial(112;5.5e-14)|Lung NSC(122;1.76e-08)|all_lung(180;6.04e-08)|Melanoma(134;0.0179)|Colorectal(260;0.216)		GBM - Glioblastoma multiforme(94;3.23e-07)		TCCCAAACATCCTTCTCCTGG	0.348													59	209					0	0	0.014410	0	0
TGM5	9333	broad.mit.edu	37	15	43552275	43552275	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:43552275G>A	uc001zrd.1	-	3	419	c.411C>T	c.(409-411)ATC>ATT	p.I137I	TGM5_uc001zre.1_Intron	NM_201631	NP_963925	O43548	TGM5_HUMAN	transglutaminase 5 isoform 1	137					epidermis development|peptide cross-linking	cytoplasm	acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			central_nervous_system(1)	1		all_cancers(109;1.37e-14)|all_epithelial(112;1.26e-12)|Lung NSC(122;2.46e-08)|all_lung(180;2.75e-07)|Melanoma(134;0.0476)|Colorectal(260;0.216)		GBM - Glioblastoma multiforme(94;4e-07)	L-Glutamine(DB00130)	TGAAAAGCAGGATGAACTCCC	0.602													11	46					0	0	0.008291	0	0
TGM5	9333	broad.mit.edu	37	15	43552323	43552323	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:43552323G>A	uc001zrd.1	-	3	371	c.363C>T	c.(361-363)ATC>ATT	p.I121I	TGM5_uc001zre.1_Intron	NM_201631	NP_963925	O43548	TGM5_HUMAN	transglutaminase 5 isoform 1	121					epidermis development|peptide cross-linking	cytoplasm	acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			central_nervous_system(1)	1		all_cancers(109;1.37e-14)|all_epithelial(112;1.26e-12)|Lung NSC(122;2.46e-08)|all_lung(180;2.75e-07)|Melanoma(134;0.0476)|Colorectal(260;0.216)		GBM - Glioblastoma multiforme(94;4e-07)	L-Glutamine(DB00130)	GGAAGGAGTCGATGTGGATTT	0.627													27	48					0	0	0.007291	0	0
MAP1A	4130	broad.mit.edu	37	15	43813704	43813704	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:43813704C>T	uc001zrt.2	+	4	500	c.33C>T	c.(31-33)GTC>GTT	p.V11V		NM_002373	NP_002364	P78559	MAP1A_HUMAN	microtubule-associated protein 1A	11						cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(3)|breast(3)|pancreas(2)|skin(1)	9		all_cancers(109;1.03e-14)|all_epithelial(112;2.23e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.05e-06)	Estramustine(DB01196)	CCGAGTATGTCTCTGAGACTG	0.582													16	34					0	0	0.004990	0	0
MAP1A	4130	broad.mit.edu	37	15	43817595	43817595	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:43817595G>A	uc001zrt.2	+	4	4391	c.3924G>A	c.(3922-3924)GCG>GCA	p.A1308A		NM_002373	NP_002364	P78559	MAP1A_HUMAN	microtubule-associated protein 1A	1308				KYLPGAITSPD -> EVLTWGDHQALN (in Ref. 4; AAD00355).		cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(3)|breast(3)|pancreas(2)|skin(1)	9		all_cancers(109;1.03e-14)|all_epithelial(112;2.23e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.05e-06)	Estramustine(DB01196)	TACCTGGGGCGATCACAAGCC	0.507													23	48					0	0	0.003954	0	0
PDIA3	2923	broad.mit.edu	37	15	44062468	44062468	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:44062468C>T	uc001zsu.2	+	11	1435	c.1287C>T	c.(1285-1287)ATC>ATT	p.I429I	PDIA3_uc010bdp.2_Silent_p.I409I|PDIA3_uc010ued.1_Silent_p.I203I	NM_005313	NP_005304	P30101	PDIA3_HUMAN	protein disulfide-isomerase A3 precursor	429	Thioredoxin 2.				cell redox homeostasis|glycerol ether metabolic process|post-translational protein modification|protein folding|protein import into nucleus|protein N-linked glycosylation via asparagine|protein retention in ER lumen|signal transduction	endoplasmic reticulum lumen|melanosome	cysteine-type endopeptidase activity|electron carrier activity|phospholipase C activity|protein binding|protein disulfide isomerase activity|protein disulfide oxidoreductase activity			ovary(1)|skin(1)	2		all_cancers(109;2.61e-15)|all_epithelial(112;1.12e-12)|Lung NSC(122;2.17e-08)|all_lung(180;2.45e-07)|Melanoma(134;0.027)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;9.48e-07)		ACCCAAATATCGTCATAGCCA	0.383													7	23					0	0	0.003080	0	0
FRMD5	84978	broad.mit.edu	37	15	44166556	44166556	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:44166556C>T	uc001ztl.2	-	14	1417	c.1240G>A	c.(1240-1242)GAG>AAG	p.E414K	FRMD5_uc001ztj.1_Missense_Mutation_p.E87K|FRMD5_uc001ztk.1_Missense_Mutation_p.E320K|FRMD5_uc010uef.1_Missense_Mutation_p.E87K|FRMD5_uc001ztm.2_Missense_Mutation_p.E87K|FRMD5_uc001ztn.2_Missense_Mutation_p.E180K	NM_032892	NP_116281	Q7Z6J6	FRMD5_HUMAN	FERM domain containing 5 isoform 2	414						cytoplasm|cytoskeleton|extrinsic to membrane|integral to membrane	cytoskeletal protein binding			ovary(1)	1		all_cancers(109;2.29e-15)|all_epithelial(112;9.98e-13)|Lung NSC(122;4.89e-08)|all_lung(180;5.08e-07)|Melanoma(134;0.0275)		all cancers(107;8.63e-20)|GBM - Glioblastoma multiforme(94;3.63e-06)		GCTACTCGCTCATTGCTATCT	0.597													13	43					0	0	0.002450	0	0
CASC4	113201	broad.mit.edu	37	15	44705554	44705554	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:44705554C>T	uc001ztp.2	+	10	1560	c.1261C>T	c.(1261-1263)CAA>TAA	p.Q421*	CASC4_uc001ztq.2_Nonsense_Mutation_p.Q365*	NM_138423	NP_612432	Q6P4E1	CASC4_HUMAN	cancer susceptibility candidate 4 isoform a	196	Lumenal (Potential).|Potential.					integral to membrane				ovary(1)	1		all_cancers(109;1.69e-13)|all_epithelial(112;3.94e-11)|Lung NSC(122;1.66e-07)|all_lung(180;1.47e-06)|Melanoma(134;0.027)		all cancers(107;2.91e-20)|GBM - Glioblastoma multiforme(94;1.57e-06)|COAD - Colon adenocarcinoma(120;0.217)|Colorectal(105;0.237)		ACGAGAGCTTCAAATGGATCC	0.308													5	12					0	0	0.001168	0	0
SPG11	80208	broad.mit.edu	37	15	44876629	44876629	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:44876629G>A	uc001ztx.2	-	30	5280	c.5249C>T	c.(5248-5250)TCC>TTC	p.S1750F	SPG11_uc010bdw.2_Missense_Mutation_p.S39F|SPG11_uc010ueh.1_Missense_Mutation_p.S1750F|SPG11_uc010uei.1_Missense_Mutation_p.S1750F|SPG11_uc001zty.1_Missense_Mutation_p.S479F	NM_025137	NP_079413	Q96JI7	SPTCS_HUMAN	spatacsin isoform 1	1750	Extracellular (Potential).				cell death	cytosol|integral to membrane|nucleus	protein binding			ovary(4)|skin(1)	5		all_cancers(109;1.29e-14)|all_epithelial(112;1.26e-12)|Lung NSC(122;1.34e-07)|all_lung(180;1.21e-06)|Melanoma(134;0.0122)		all cancers(107;2.93e-22)|GBM - Glioblastoma multiforme(94;1.55e-06)|COAD - Colon adenocarcinoma(120;0.0432)|Colorectal(105;0.0484)|Lung(196;0.104)|LUSC - Lung squamous cell carcinoma(244;0.214)		TGAGAAAAAGGAAGAAGCTGC	0.463													9	29					0	0	0.006214	0	0
DUOX2	50506	broad.mit.edu	37	15	45389545	45389545	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:45389545G>A	uc010bea.2	-	29	3941	c.3738C>T	c.(3736-3738)TTC>TTT	p.F1246F	DUOX2_uc001zun.2_Silent_p.F1246F	NM_014080	NP_054799	Q9NRD8	DUOX2_HUMAN	dual oxidase 2 precursor	1246	Helical; (Potential).|Ferric oxidoreductase.				cuticle development|cytokine-mediated signaling pathway|hormone biosynthetic process|hydrogen peroxide catabolic process|response to cAMP|response to virus	apical plasma membrane|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|peroxidase activity			ovary(2)|skin(2)|pancreas(1)	5		all_cancers(109;3.79e-11)|all_epithelial(112;2.92e-09)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;1.05e-18)|GBM - Glioblastoma multiforme(94;4.23e-07)|COAD - Colon adenocarcinoma(120;0.0668)|Colorectal(133;0.068)		AGTAGATGTGGAAAGTGGGCA	0.592													17	50					0	0	0.007413	0	0
SLC28A2	9153	broad.mit.edu	37	15	45555390	45555390	+	Missense_Mutation	SNP	A	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:45555390A>C	uc001zva.2	+	5	459	c.394A>C	c.(394-396)ACA>CCA	p.T132P		NM_004212	NP_004203	O43868	S28A2_HUMAN	solute carrier family 28 (sodium-coupled	132					nucleobase, nucleoside and nucleotide metabolic process	integral to plasma membrane|membrane fraction	nucleoside binding|nucleoside:sodium symporter activity|purine nucleoside transmembrane transporter activity			ovary(4)	4		all_cancers(109;8.53e-07)|all_epithelial(112;1.39e-05)|Lung NSC(122;8.3e-05)|all_lung(180;0.000547)|Melanoma(134;0.0417)		all cancers(107;3.77e-16)|GBM - Glioblastoma multiforme(94;2.71e-06)		CAAAAAATTAACAAGATGTCT	0.463													4	24					0	0	0.000602	0	0
SLC28A2	9153	broad.mit.edu	37	15	45556876	45556877	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:45556876_45556877GG>AA	uc001zva.2	+	7	677_678	c.612_613GG>AA	c.(610-615)TCGGGC>TCAAGC	p.G205S		NM_004212	NP_004203	O43868	S28A2_HUMAN	solute carrier family 28 (sodium-coupled	205	Helical; (Potential).				nucleobase, nucleoside and nucleotide metabolic process	integral to plasma membrane|membrane fraction	nucleoside binding|nucleoside:sodium symporter activity|purine nucleoside transmembrane transporter activity			ovary(4)	4		all_cancers(109;8.53e-07)|all_epithelial(112;1.39e-05)|Lung NSC(122;8.3e-05)|all_lung(180;0.000547)|Melanoma(134;0.0417)		all cancers(107;3.77e-16)|GBM - Glioblastoma multiforme(94;2.71e-06)		CAGTGTTTTCGGGCCTAGGTCT	0.416													21	48					0	0	0.004672	0	0
SLC28A2	9153	broad.mit.edu	37	15	45561668	45561668	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:45561668C>T	uc001zva.2	+	14	1566	c.1501C>T	c.(1501-1503)CAA>TAA	p.Q501*		NM_004212	NP_004203	O43868	S28A2_HUMAN	solute carrier family 28 (sodium-coupled	501					nucleobase, nucleoside and nucleotide metabolic process	integral to plasma membrane|membrane fraction	nucleoside binding|nucleoside:sodium symporter activity|purine nucleoside transmembrane transporter activity			ovary(4)	4		all_cancers(109;8.53e-07)|all_epithelial(112;1.39e-05)|Lung NSC(122;8.3e-05)|all_lung(180;0.000547)|Melanoma(134;0.0417)		all cancers(107;3.77e-16)|GBM - Glioblastoma multiforme(94;2.71e-06)		GCAACTGTCTCAATACAAGAA	0.433													16	27					0	0	0.003163	0	0
C15orf48	84419	broad.mit.edu	37	15	45723275	45723275	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:45723275C>T	uc001zvg.2	+	3	231	c.113C>T	c.(112-114)ACC>ATC	p.T38I	C15orf48_uc001zvh.2_Missense_Mutation_p.T38I|MIR147B_hsa-mir-147b|MI0005544_5'Flank	NM_197955	NP_922946	Q9C002	NMES1_HUMAN	normal mucosa of esophagus specific 1	38						nucleus				ovary(1)	1		Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;1.67e-16)|GBM - Glioblastoma multiforme(94;1.71e-06)		CTTTGGAAAACCGATGTGATG	0.403													33	80					0	0	0.013726	0	0
SQRDL	58472	broad.mit.edu	37	15	45968449	45968449	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:45968449G>A	uc001zvt.2	+	7	994	c.805G>A	c.(805-807)GAT>AAT	p.D269N	SQRDL_uc001zvu.2_Missense_Mutation_p.D269N|SQRDL_uc001zvv.2_Missense_Mutation_p.D269N	NM_021199	NP_067022	Q9Y6N5	SQRD_HUMAN	sulfide dehydrogenase like precursor	269							oxidoreductase activity			ovary(1)	1		Lung NSC(122;0.000117)|all_lung(180;0.000737)|Melanoma(134;0.0417)		all cancers(107;5.89e-18)|GBM - Glioblastoma multiforme(94;1.21e-06)|COAD - Colon adenocarcinoma(120;0.17)|Colorectal(133;0.188)		AGTCCGAGCCGATAAACAAGA	0.478													30	63					0	0	0.003271	0	0
SEMA6D	80031	broad.mit.edu	37	15	48063557	48063557	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:48063557C>T	uc010bek.2	+	19	3157	c.2797C>T	c.(2797-2799)CCT>TCT	p.P933S	SEMA6D_uc001zvw.2_Missense_Mutation_p.P871S|SEMA6D_uc001zvy.2_Missense_Mutation_p.P933S|SEMA6D_uc001zvz.2_Missense_Mutation_p.P877S|SEMA6D_uc001zwa.2_3'UTR|SEMA6D_uc001zwb.2_Missense_Mutation_p.P871S|SEMA6D_uc001zwc.2_Missense_Mutation_p.P858S	NM_153618	NP_705871	Q8NFY4	SEM6D_HUMAN	semaphorin 6D isoform 4 precursor	933	Cytoplasmic (Potential).				axon guidance	cytoplasm|integral to membrane|plasma membrane	receptor activity			skin(3)|breast(1)	4		all_lung(180;0.000635)|Myeloproliferative disorder(241;0.116)|Melanoma(134;0.18)		all cancers(107;1.2e-11)|GBM - Glioblastoma multiforme(94;1.2e-06)		ATACTCCCCTCCTTCAACTCT	0.522													11	82					0	0	0.010729	0	0
COPS2	9318	broad.mit.edu	37	15	49437168	49437168	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:49437168G>A	uc001zxf.2	-	2	241	c.162C>T	c.(160-162)TTC>TTT	p.F54F	COPS2_uc001zxh.2_Silent_p.F54F|COPS2_uc010ufa.1_Intron	NM_004236	NP_004227	P61201	CSN2_HUMAN	COP9 constitutive photomorphogenic homolog	54					cullin deneddylation|transcription from RNA polymerase II promoter	cytoplasm|signalosome	protein binding|signal transducer activity			lung(1)	1		all_lung(180;0.0428)		all cancers(107;1.34e-07)|GBM - Glioblastoma multiforme(94;3.02e-05)		AAACCTTTTGGAAACTGCTTA	0.323													10	40					0	0	0.010729	0	0
DTWD1	56986	broad.mit.edu	37	15	49924493	49924493	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:49924493C>T	uc001zxq.2	+	4	679	c.402C>T	c.(400-402)GAC>GAT	p.D134D	DTWD1_uc001zxs.2_Silent_p.D134D|DTWD1_uc001zxr.2_Silent_p.D47D|DTWD1_uc001zxo.2_Silent_p.D134D	NM_020234	NP_064619	Q8N5C7	DTWD1_HUMAN	DTW domain containing 1	134											0		all_lung(180;0.0384)		all cancers(107;3.27e-08)|GBM - Glioblastoma multiforme(94;7.6e-05)		AAGAAAAGGACCATGAAGTAG	0.318													9	48					0	0	0.013537	0	0
ATP8B4	79895	broad.mit.edu	37	15	50211080	50211080	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:50211080G>A	uc001zxu.2	-	19	2133	c.1991C>T	c.(1990-1992)TCA>TTA	p.S664L	ATP8B4_uc010ber.2_Missense_Mutation_p.S537L|ATP8B4_uc010ufd.1_Missense_Mutation_p.S474L|ATP8B4_uc010ufe.1_RNA	NM_024837	NP_079113	Q8TF62	AT8B4_HUMAN	ATPase class I type 8B member 4	664	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			skin(3)|ovary(2)|breast(2)|large_intestine(1)	8		all_lung(180;0.00183)		all cancers(107;2.41e-07)|GBM - Glioblastoma multiforme(94;8.28e-05)		ATTGGCTAGTGATAAACTTGT	0.343													13	51					0	0	0.006122	0	0
ATP8B4	79895	broad.mit.edu	37	15	50264922	50264922	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:50264922C>T	uc001zxu.2	-	13	1242	c.1100G>A	c.(1099-1101)CGA>CAA	p.R367Q	ATP8B4_uc010ber.2_Missense_Mutation_p.R240Q|ATP8B4_uc010ufd.1_Missense_Mutation_p.R240Q|ATP8B4_uc010ufe.1_RNA	NM_024837	NP_079113	Q8TF62	AT8B4_HUMAN	ATPase class I type 8B member 4	367	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			skin(3)|ovary(2)|breast(2)|large_intestine(1)	8		all_lung(180;0.00183)		all cancers(107;2.41e-07)|GBM - Glioblastoma multiforme(94;8.28e-05)		TATTGCTTTTCGAGAATAATA	0.408													4	20					0	0	0.001168	0	0
HDC	3067	broad.mit.edu	37	15	50545818	50545818	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:50545818G>A	uc001zxz.2	-	7	872	c.766C>T	c.(766-768)CTG>TTG	p.L256L	HDC_uc001zxy.2_5'Flank|HDC_uc010uff.1_Silent_p.L256L|HDC_uc010bet.1_Silent_p.L177L	NM_002112	NP_002103	P19113	DCHS_HUMAN	histidine decarboxylase	256					catecholamine biosynthetic process|histidine metabolic process		histidine decarboxylase activity	p.L256L(1)		large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6		all_lung(180;0.0138)		all cancers(107;1.12e-06)|GBM - Glioblastoma multiforme(94;9.95e-05)	L-Histidine(DB00117)|Pyridoxal Phosphate(DB00114)	AGCTCTGACAGGCAGTCAAAT	0.488													6	46					0	0	0.003080	0	0
HDC	3067	broad.mit.edu	37	15	50555459	50555459	+	Silent	SNP	C	T	T	rs143453549		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:50555459C>T	uc001zxz.2	-	2	283	c.177G>A	c.(175-177)GGG>GGA	p.G59G	HDC_uc010uff.1_Silent_p.G59G|HDC_uc010bet.1_Silent_p.G59G|HDC_uc010beu.1_Silent_p.G59G	NM_002112	NP_002103	P19113	DCHS_HUMAN	histidine decarboxylase	59					catecholamine biosynthetic process|histidine metabolic process		histidine decarboxylase activity			large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6		all_lung(180;0.0138)		all cancers(107;1.12e-06)|GBM - Glioblastoma multiforme(94;9.95e-05)	L-Histidine(DB00117)|Pyridoxal Phosphate(DB00114)	GTTCAATGTCCCCAAAGATGC	0.597													18	93					0	0	0.014323	0	0
UNC13C	440279	broad.mit.edu	37	15	54305702	54305702	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:54305702G>A	uc002ack.2	+	1	602	c.602G>A	c.(601-603)AGC>AAC	p.S201N		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	201					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		TCAGAGTTAAGCACCATGAAA	0.458													22	73					0	0	0.012319	0	0
UNC13C	440279	broad.mit.edu	37	15	54914527	54914527	+	Missense_Mutation	SNP	C	T	T	rs141439711	by1000genomes	TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:54914527C>T	uc002ack.2	+	29	6109	c.6109C>T	c.(6109-6111)CGT>TGT	p.R2037C	UNC13C_uc002acm.2_5'UTR	NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	2037					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		ATTTTCAGGTCGTTCCTCCAA	0.398													20	32					0	0	0.002780	0	0
RAB27A	5873	broad.mit.edu	37	15	55497756	55497756	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:55497756G>A	uc002aco.2	-	7	848	c.615C>T	c.(613-615)GCC>GCT	p.A205A	RAB27A_uc002acr.2_Silent_p.A205A|RAB27A_uc002acp.2_Silent_p.A205A|RAB27A_uc002acq.2_Silent_p.A205A	NM_183234	NP_899057	P51159	RB27A_HUMAN	Ras-related protein Rab-27A	205					small GTPase mediated signal transduction	dendrite|exocytic vesicle|late endosome|lysosome|melanosome	GTP binding|GTPase activity			ovary(1)	1				all cancers(107;0.0273)|GBM - Glioblastoma multiforme(80;0.0993)		GATCCGTAGAGGCATGACCAT	0.483													23	86					0	0	0.004656	0	0
RFX7	64864	broad.mit.edu	37	15	56390286	56390286	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:56390286G>A	uc010bfn.2	-	8	1100	c.1100C>T	c.(1099-1101)CCC>CTC	p.P367L	RFX7_uc010ugk.1_RNA|RFX7_uc002adn.1_Missense_Mutation_p.P181L	NM_022841	NP_073752	Q2KHR2	RFX7_HUMAN	regulatory factor X domain containing 2	270					regulation of transcription, DNA-dependent	nucleus	DNA binding				0						TACCGGAATGGGACTAGGGAC	0.398													8	21					0	0	0.004482	0	0
ZNF280D	54816	broad.mit.edu	37	15	56993168	56993168	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:56993168G>A	uc002adu.2	-	6	561	c.344C>T	c.(343-345)TCA>TTA	p.S115L	ZNF280D_uc002adv.2_Missense_Mutation_p.S102L|ZNF280D_uc010bfq.2_Missense_Mutation_p.S115L|ZNF280D_uc002adw.1_Missense_Mutation_p.S143L|ZNF280D_uc010bfr.1_RNA|ZNF280D_uc002ady.2_Missense_Mutation_p.S115L|ZNF280D_uc002adx.2_Missense_Mutation_p.S115L	NM_017661	NP_060131	Q6N043	Z280D_HUMAN	suppressor of hairy wing homolog 4 isoform 1	115					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3				all cancers(107;0.0399)|GBM - Glioblastoma multiforme(80;0.0787)		AGAACTATCTGAAGATCTAGA	0.388													6	21					0	0	0.001984	0	0
CGNL1	84952	broad.mit.edu	37	15	57730485	57730485	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:57730485G>A	uc002aeg.2	+	2	364	c.288G>A	c.(286-288)GAG>GAA	p.E96E	CGNL1_uc010bfw.2_Silent_p.E96E	NM_032866	NP_116255	Q0VF96	CGNL1_HUMAN	cingulin-like 1	96	Head.					myosin complex|tight junction	motor activity			skin(6)|ovary(4)|central_nervous_system(1)	11				all cancers(107;0.121)|GBM - Glioblastoma multiforme(80;0.186)		TGCCAAAGGAGAACAGTGAAG	0.498													15	40					0	0	0.002450	0	0
VPS13C	54832	broad.mit.edu	37	15	62256067	62256067	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:62256067C>T	uc002agz.2	-	32	3372	c.3298G>A	c.(3298-3300)GAA>AAA	p.E1100K	VPS13C_uc002aha.2_Missense_Mutation_p.E1057K|VPS13C_uc002ahb.1_Missense_Mutation_p.E1100K|VPS13C_uc002ahc.1_Missense_Mutation_p.E1057K	NM_020821	NP_065872	Q709C8	VP13C_HUMAN	vacuolar protein sorting 13C protein isoform 2A	1100					protein localization					ovary(2)	2						TTGTTCTTTTCGTTGCAAACA	0.348													12	17					0	0	0.010729	0	0
TLN2	83660	broad.mit.edu	37	15	63089531	63089531	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:63089531C>T	uc002alb.3	+	45	6164	c.6164C>T	c.(6163-6165)ACC>ATC	p.T2055I	TLN2_uc002alc.3_Missense_Mutation_p.T448I	NM_015059	NP_055874	Q9Y4G6	TLN2_HUMAN	talin 2	2055					cell adhesion|cell-cell junction assembly|cytoskeletal anchoring at plasma membrane	actin cytoskeleton|cytoplasm|focal adhesion|ruffle|synapse	actin binding|insulin receptor binding|structural constituent of cytoskeleton			ovary(5)|upper_aerodigestive_tract(2)|lung(2)|breast(2)	11						TCAGCAGCCACCATCACCCAG	0.647													21	33					0	0	0.010504	0	0
HERC1	8925	broad.mit.edu	37	15	64047438	64047438	+	Missense_Mutation	SNP	A	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:64047438A>T	uc002amp.2	-	6	1768	c.1620T>A	c.(1618-1620)TTT>TTA	p.F540L	HERC1_uc010uil.1_Intron|HERC1_uc010bgt.1_Missense_Mutation_p.F540L	NM_003922	NP_003913	Q15751	HERC1_HUMAN	hect domain and RCC1-like domain 1	540	WD 2.|RCC1 4.				protein modification process|transport	cytosol|Golgi apparatus|membrane	acid-amino acid ligase activity|ARF guanyl-nucleotide exchange factor activity			ovary(6)|breast(6)|lung(5)|central_nervous_system(2)	19						CTAATCTTCCAAAGTCTCCTT	0.388													9	16					0	0	0.004482	0	0
RASL12	51285	broad.mit.edu	37	15	65347594	65347594	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:65347594C>T	uc002aoi.1	-	5	659	c.444G>A	c.(442-444)GAG>GAA	p.E148E	RASL12_uc002aoj.1_Silent_p.E129E|RASL12_uc010uir.1_Silent_p.E137E	NM_016563	NP_057647	Q9NYN1	RASLC_HUMAN	RAS-like, family 12 protein	148					small GTPase mediated signal transduction	membrane	GTP binding|GTPase activity			skin(1)	1						AAGCCACACCCTCTGCCTTGG	0.358													3	6					0	0	0.004672	0	0
CILP	8483	broad.mit.edu	37	15	65495794	65495794	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:65495794C>T	uc002aon.2	-	7	1115	c.934G>A	c.(934-936)GTG>ATG	p.V312M		NM_003613	NP_003604	O75339	CILP1_HUMAN	cartilage intermediate layer protein	312	Ig-like C2-type.				negative regulation of insulin-like growth factor receptor signaling pathway	extracellular matrix part|extracellular space|proteinaceous extracellular matrix				ovary(4)|pancreas(2)|skin(1)	7						GGGTTCATCACCATGTATGGA	0.502													9	25					0	0	0.004482	0	0
IGDCC3	9543	broad.mit.edu	37	15	65625743	65625743	+	Silent	SNP	A	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:65625743A>G	uc002aos.2	-	6	1086	c.834T>C	c.(832-834)CCT>CCC	p.P278P		NM_004884	NP_004875	Q8IVU1	IGDC3_HUMAN	putative neuronal cell adhesion molecule	278	Extracellular (Potential).|Ig-like C2-type 3.									ovary(3)	3						CCACCCCGATAGGGCGACCAT	0.567													5	11					0	0	0.001168	0	0
DENND4A	10260	broad.mit.edu	37	15	65964189	65964189	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:65964189C>T	uc002aph.2	-	24	4651	c.4273G>A	c.(4273-4275)GAA>AAA	p.E1425K	DENND4A_uc002api.2_Missense_Mutation_p.E1468K	NM_005848	NP_005839	Q7Z401	MYCPP_HUMAN	DENN/MADD domain containing 4A isoform 2	1425					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4						GATGTCACTTCTGATTTCCCA	0.348													17	70					0	0	0.008871	0	0
DENND4A	10260	broad.mit.edu	37	15	66048628	66048628	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:66048628G>A	uc002aph.2	-	3	539	c.161C>T	c.(160-162)TCT>TTT	p.S54F	DENND4A_uc002api.2_Missense_Mutation_p.S54F|DENND4A_uc002apj.3_Missense_Mutation_p.S54F|DENND4A_uc010ujj.1_Missense_Mutation_p.S54F	NM_005848	NP_005839	Q7Z401	MYCPP_HUMAN	DENN/MADD domain containing 4A isoform 2	54	MABP.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4						CTCCCCAAGAGATTTGATAAT	0.378													5	17					0	0	0.000602	0	0
IQCH	64799	broad.mit.edu	37	15	67687867	67687867	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:67687867C>T	uc002aqo.1	+	13	1918	c.1871C>T	c.(1870-1872)CCT>CTT	p.P624L	IQCH_uc002aqq.1_Intron|IQCH_uc002aqp.1_Intron	NM_001031715	NP_001026885	Q86VS3	IQCH_HUMAN	IQ motif containing H isoform 1	624										skin(3)|ovary(1)	4				Colorectal(3;0.0856)		GTGGCAGTTCCTCCTGGAATA	0.423													19	29					0	0	0.008871	0	0
NOX5	79400	broad.mit.edu	37	15	69325563	69325563	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:69325563C>T	uc002ars.1	+	5	821	c.801C>T	c.(799-801)GTC>GTT	p.V267V	NOX5_uc002arp.1_Silent_p.V249V|NOX5_uc002arq.1_Silent_p.V221V|NOX5_uc010bid.1_Silent_p.V232V|NOX5_uc002arr.1_Silent_p.V239V|NOX5_uc010bie.1_Silent_p.V67V|NOX5_uc010bif.1_RNA	NM_024505	NP_078781	Q96PH1	NOX5_HUMAN	NADPH oxidase, EF-hand calcium binding domain 5	267	Helical; (Potential).				angiogenesis|angiogenesis|cytokine secretion|cytokinesis|electron transport chain|endothelial cell proliferation|induction of apoptosis|positive regulation of reactive oxygen species metabolic process|regulation of fusion of sperm to egg plasma membrane|regulation of proton transport|superoxide anion generation	endoplasmic reticulum|endoplasmic reticulum|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|hydrogen ion channel activity|NADP binding|superoxide-generating NADPH oxidase activity			breast(1)|pancreas(1)	2						GCGCCAGCGTCATGGTGGCCA	0.647													6	20					0	0	0.001984	0	0
GRAMD2	196996	broad.mit.edu	37	15	72455780	72455780	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:72455780C>T	uc002atq.2	-	10	807	c.783G>A	c.(781-783)GGG>GGA	p.G261G	GRAMD2_uc010bis.2_Silent_p.G261G|GRAMD2_uc010ukh.1_Silent_p.G55G	NM_001012642	NP_001012660	Q8IUY3	GRAM2_HUMAN	GRAM domain containing 2	261						integral to membrane					0						ATGCCCACCTCCCACCATTTT	0.527													10	104					0	0	0.001855	0	0
SEMA7A	8482	broad.mit.edu	37	15	74707193	74707193	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:74707193G>A	uc002axv.2	-	9	1121	c.1081C>T	c.(1081-1083)CCG>TCG	p.P361S	SEMA7A_uc010ulk.1_Missense_Mutation_p.P196S|SEMA7A_uc010ull.1_Missense_Mutation_p.P347S	NM_003612	NP_003603	O75326	SEM7A_HUMAN	semaphorin 7A isoform 1 preproprotein	361	Sema.				axon guidance|immune response|inflammatory response|integrin-mediated signaling pathway|positive regulation of axon extension|positive regulation of ERK1 and ERK2 cascade|positive regulation of macrophage cytokine production|regulation of inflammatory response	anchored to membrane|external side of plasma membrane	receptor activity			breast(1)|central_nervous_system(1)	2						CCAGGCCGCGGGTTGGGAAGG	0.622													8	46					0	0	0.006214	0	0
CYP1A2	1544	broad.mit.edu	37	15	75047367	75047367	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:75047367C>T	uc002ayr.1	+	7	1553	c.1489C>T	c.(1489-1491)CTG>TTG	p.L497L		NM_000761	NP_000752	P05177	CP1A2_HUMAN	cytochrome P450, family 1, subfamily A,	497					alkaloid metabolic process|exogenous drug catabolic process|methylation|monocarboxylic acid metabolic process|monoterpenoid metabolic process|oxidative deethylation|oxidative demethylation|steroid catabolic process|toxin biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|caffeine oxidase activity|demethylase activity|electron carrier activity|enzyme binding|heme binding|oxygen binding			ovary(3)|breast(1)	4					Acenocoumarol(DB01418)|Acetaminophen(DB00316)|Aciclovir(DB00787)|Alosetron(DB00969)|Aminophenazone(DB01424)|Amitriptyline(DB00321)|Anagrelide(DB00261)|Azelastine(DB00972)|Bortezomib(DB00188)|Caffeine(DB00201)|Carmustine(DB00262)|Chlordiazepoxide(DB00475)|Chlorpromazine(DB00477)|Chlorzoxazone(DB00356)|Cimetidine(DB00501)|Cinacalcet(DB01012)|Ciprofloxacin(DB00537)|Clomipramine(DB01242)|Clotrimazole(DB00257)|Clozapine(DB00363)|Conjugated Estrogens(DB00286)|Cyclobenzaprine(DB00924)|Dacarbazine(DB00851)|Desloratadine(DB00967)|Diazepam(DB00829)|Dibucaine(DB00527)|Diclofenac(DB00586)|Duloxetine(DB00476)|Enoxacin(DB00467)|Esomeprazole(DB00736)|Estradiol(DB00783)|Estrone(DB00655)|Fluorouracil(DB00544)|Flutamide(DB00499)|Fluvoxamine(DB00176)|Frovatriptan(DB00998)|Grepafloxacin(DB00365)|Haloperidol(DB00502)|Hesperetin(DB01094)|Imipramine(DB00458)|Ketoconazole(DB01026)|Leflunomide(DB01097)|Levobupivacaine(DB01002)|Levofloxacin(DB01137)|Lidocaine(DB00281)|Lomefloxacin(DB00978)|Melatonin(DB01065)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mirtazapine(DB00370)|Norfloxacin(DB01059)|Nortriptyline(DB00540)|Ofloxacin(DB01165)|Olanzapine(DB00334)|Ondansetron(DB00904)|Palonosetron(DB00377)|Pantoprazole(DB00213)|Pefloxacin(DB00487)|Pimozide(DB01100)|Propafenone(DB01182)|Propranolol(DB00571)|Quinidine(DB00908)|Ramelteon(DB00980)|Ranitidine(DB00863)|Rasagiline(DB01367)|Rifampin(DB01045)|Riluzole(DB00740)|Rofecoxib(DB00533)|Ropinirole(DB00268)|Ropivacaine(DB00296)|Tacrine(DB00382)|Telithromycin(DB00976)|Terfenadine(DB00342)|Theophylline(DB00277)|Thiabendazole(DB00730)|Tizanidine(DB00697)|Tolbutamide(DB01124)|Verapamil(DB00661)|Warfarin(DB00682)|Zileuton(DB00744)|Zolmitriptan(DB00315)	CATCTACGGGCTGACCATGAA	0.612													5	34					0	0	0.000602	0	0
NEIL1	79661	broad.mit.edu	37	15	75641615	75641615	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:75641615G>A	uc002bad.2	+	2	875	c.369G>A	c.(367-369)TGG>TGA	p.W123*	NEIL1_uc002bae.2_Nonsense_Mutation_p.W209*	NM_024608	NP_078884	Q96FI4	NEIL1_HUMAN	nei endonuclease VIII-like 1	123					base-excision repair|negative regulation of nuclease activity|nucleotide-excision repair|response to oxidative stress	cytoplasm|nucleus	damaged DNA binding|DNA-(apurinic or apyrimidinic site) lyase activity|protein C-terminus binding|zinc ion binding			ovary(1)	1						TCGGCCGCTGGGACCTTGGGG	0.672								BER_DNA_glycosylases					22	32					0	0	0.002780	0	0
IMP3	55272	broad.mit.edu	37	15	75931965	75931965	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:75931965A>G	uc002bat.2	-	2	1489	c.545T>C	c.(544-546)CTG>CCG	p.L182P	IMP3_uc010bkl.1_Missense_Mutation_p.L182P	NM_018285	NP_060755	Q9NV31	IMP3_HUMAN	IMP3, U3 small nucleolar ribonucleoprotein	182					rRNA processing	nucleolus|ribonucleoprotein complex	protein binding|rRNA binding				0						CTAGGCTTCCAGATCGAAGTC	0.478													17	36					0	0	0.006122	0	0
CSPG4	1464	broad.mit.edu	37	15	75977570	75977570	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:75977570G>A	uc002baw.2	-	4	4355	c.4262C>T	c.(4261-4263)TCC>TTC	p.S1421F		NM_001897	NP_001888	Q6UVK1	CSPG4_HUMAN	chondroitin sulfate proteoglycan 4 precursor	1421	CSPG 9.|Extracellular (Potential).|Gly/Ser-rich (glycosaminoglycan attachment domain).|Interaction with COL5A1 (By similarity).				angiogenesis|cell differentiation|intracellular signal transduction|positive regulation of peptidyl-tyrosine phosphorylation|tissue remodeling	apical plasma membrane|cell surface|integral to plasma membrane|intracellular|lamellipodium membrane	protein kinase binding|signal transducer activity			ovary(2)|pancreas(1)	3						CATTCTCCAGGAGAAGGCGCT	0.662													19	70					0	0	0.008871	0	0
Unknown	0	broad.mit.edu	37	15	76075183	76075183	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:76075183C>T	uc010umm.1	+	10	823	c.746C>T	c.(745-747)CCC>CTC	p.P249L	uc002bba.1_5'Flank					SubName: Full=cDNA FLJ59077, highly similar to Golgin subfamily A member 6;																		CCCCGGCACCCCCAGCAGTGA	0.557													10	7					0	0	0.006214	0	0
CHRNA3	1136	broad.mit.edu	37	15	78894485	78894485	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:78894485G>A	uc002bec.2	-	5	685	c.499C>T	c.(499-501)CCG>TCG	p.P167S	CHRNA3_uc002bea.2_RNA|CHRNA3_uc002beb.2_Missense_Mutation_p.P167S	NM_000743	NP_000734	P32297	ACHA3_HUMAN	cholinergic receptor, nicotinic, alpha 3	167	Extracellular (Potential).				activation of transmembrane receptor protein tyrosine kinase activity|behavioral response to nicotine|locomotory behavior|regulation of acetylcholine secretion|regulation of dendrite morphogenesis|regulation of excitatory postsynaptic membrane potential|regulation of smooth muscle contraction|synaptic transmission involved in micturition|synaptic transmission, cholinergic	cell junction|dendrite|neuronal cell body|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic density|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity			central_nervous_system(3)|ovary(1)	4						TAATCAAACGGGAAGTAGGTC	0.488													18	76					0	0	0.002780	0	0
RASGRF1	5923	broad.mit.edu	37	15	79320131	79320131	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:79320131C>T	uc002beq.2	-	9	1708	c.1333G>A	c.(1333-1335)GAA>AAA	p.E445K	RASGRF1_uc002bep.2_Missense_Mutation_p.E445K|RASGRF1_uc010blm.1_Missense_Mutation_p.E367K|RASGRF1_uc002ber.3_Missense_Mutation_p.E445K	NM_002891	NP_002882	Q13972	RGRF1_HUMAN	Ras protein-specific guanine	445					activation of Rac GTPase activity|apoptosis|induction of apoptosis by extracellular signals|long-term memory|nerve growth factor receptor signaling pathway|neuron projection development|regulation of Rac protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol|growth cone|plasma membrane|synaptosome	Rho guanyl-nucleotide exchange factor activity			skin(4)|ovary(1)|central_nervous_system(1)	6						TCACAGCCTTCGATGATCATG	0.567													41	47					0	0	0.009718	0	0
ARNT2	9915	broad.mit.edu	37	15	80855474	80855474	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:80855474C>T	uc002bfr.2	+	12	1376	c.1210C>T	c.(1210-1212)CGC>TGC	p.R404C	ARNT2_uc010unm.1_Missense_Mutation_p.R393C|ARNT2_uc002bfs.2_Missense_Mutation_p.R393C	NM_014862	NP_055677	Q9HBZ2	ARNT2_HUMAN	aryl hydrocarbon receptor nuclear translocator	404	PAC.				central nervous system development|in utero embryonic development|response to hypoxia		aryl hydrocarbon receptor binding|DNA binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity|signal transducer activity			central_nervous_system(3)|ovary(1)|pancreas(1)	5			BRCA - Breast invasive adenocarcinoma(143;0.134)			GTATCGATTTCGCACCAAGAA	0.493													49	141					0	0	0.014410	0	0
HOMER2	9455	broad.mit.edu	37	15	83561495	83561495	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:83561495G>A	uc002bjg.2	-	2	290	c.104C>T	c.(103-105)TCC>TTC	p.S35F	HOMER2_uc002bjh.2_Missense_Mutation_p.S35F|HOMER2_uc002bjj.2_Missense_Mutation_p.S35F|HOMER2_uc002bji.2_Missense_Mutation_p.S35F	NM_199330	NP_955362	Q9NSB8	HOME2_HUMAN	homer 2 isoform 2	35	WH1.				metabotropic glutamate receptor signaling pathway	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane					0						ATAGAAGTAGGAAACGGTGAC	0.517													21	78					0	0	0.002780	0	0
TM6SF1	53346	broad.mit.edu	37	15	83784641	83784641	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:83784641G>A	uc002bjp.2	+	3	350	c.241G>A	c.(241-243)GGA>AGA	p.G81R	TM6SF1_uc010bmq.2_Missense_Mutation_p.G81R|TM6SF1_uc002bjq.2_Missense_Mutation_p.G81R|TM6SF1_uc010bmr.2_RNA	NM_023003	NP_075379	Q9BZW5	TM6S1_HUMAN	transmembrane 6 superfamily member 1 isoform 1	81	Helical; (Potential).					integral to membrane				ovary(1)	1						CCTCATCATAGGACTGGAGCA	0.418													5	39					0	0	0.000602	0	0
HDGFRP3	50810	broad.mit.edu	37	15	83826717	83826717	+	Nonsense_Mutation	SNP	C	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:83826717C>A	uc002bjs.1	-	3	393	c.238G>T	c.(238-240)GGA>TGA	p.G80*		NM_016073	NP_057157	Q9Y3E1	HDGR3_HUMAN	hepatoma-derived growth factor, related protein	80					cell proliferation	nucleus	growth factor activity				0						TCGTTAAATCCTTTCCGTTTG	0.368													9	26					2.17888e-05	2.33103e-05	0.006214	1	0
ADAMTSL3	57188	broad.mit.edu	37	15	84651420	84651420	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:84651420G>A	uc002bjz.3	+	21	3264	c.3040G>A	c.(3040-3042)GAA>AAA	p.E1014K	ADAMTSL3_uc010bmt.1_Missense_Mutation_p.E1014K|ADAMTSL3_uc010bmu.1_Missense_Mutation_p.E1014K	NM_207517	NP_997400	P82987	ATL3_HUMAN	ADAMTS-like 3 precursor	1014						proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(6)|central_nervous_system(5)|lung(5)|large_intestine(4)|breast(3)|skin(2)|kidney(1)|pancreas(1)	27			BRCA - Breast invasive adenocarcinoma(143;0.211)			GCCTATGAGGGAATATCCTGG	0.507													11	48					0	0	0.010729	0	0
ZNF592	9640	broad.mit.edu	37	15	85326275	85326275	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:85326275C>T	uc002bld.2	+	4	705	c.369C>T	c.(367-369)TTC>TTT	p.F123F	ZNF592_uc010upb.1_RNA	NM_014630	NP_055445	Q92610	ZN592_HUMAN	zinc finger protein 592	123					cell death|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)|skin(2)	6			BRCA - Breast invasive adenocarcinoma(143;0.0587)			CCAGGAGTTTCCCTGGCAAAC	0.502													26	40					0	0	0.003954	0	0
ALPK3	57538	broad.mit.edu	37	15	85383221	85383221	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:85383221C>T	uc002ble.2	+	5	1484	c.1317C>T	c.(1315-1317)GTC>GTT	p.V439V		NM_020778	NP_065829	Q96L96	ALPK3_HUMAN	alpha-kinase 3	439					heart development	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(3)|ovary(3)|lung(2)|skin(2)|central_nervous_system(1)|breast(1)	12			BRCA - Breast invasive adenocarcinoma(143;0.0587)			GCCCCTCGGTCCCTACCAGGG	0.657													9	13					0	0	0.004482	0	0
ALPK3	57538	broad.mit.edu	37	15	85399721	85399721	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:85399721C>T	uc002ble.2	+	6	2525	c.2358C>T	c.(2356-2358)ATC>ATT	p.I786I		NM_020778	NP_065829	Q96L96	ALPK3_HUMAN	alpha-kinase 3	786					heart development	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(3)|ovary(3)|lung(2)|skin(2)|central_nervous_system(1)|breast(1)	12			BRCA - Breast invasive adenocarcinoma(143;0.0587)			GTCAAGGTATCATTGAACCCA	0.517													13	34					0	0	0.002450	0	0
ALPK3	57538	broad.mit.edu	37	15	85406124	85406124	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:85406124G>A	uc002ble.2	+	10	5161	c.4994G>A	c.(4993-4995)AGA>AAA	p.R1665K	ALPK3_uc010upc.1_5'Flank	NM_020778	NP_065829	Q96L96	ALPK3_HUMAN	alpha-kinase 3	1665	Alpha-type protein kinase.				heart development	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(3)|ovary(3)|lung(2)|skin(2)|central_nervous_system(1)|breast(1)	12			BRCA - Breast invasive adenocarcinoma(143;0.0587)			CTTGTGGGCAGAAACTACGAC	0.552													6	63					0	0	0.006214	0	0
SLC28A1	9154	broad.mit.edu	37	15	85461766	85461766	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:85461766C>T	uc002blg.2	+	10	1009	c.807C>T	c.(805-807)ATC>ATT	p.I269I	SLC28A1_uc010upd.1_Silent_p.I191I|SLC28A1_uc010bnb.2_Silent_p.I269I|SLC28A1_uc010upe.1_Silent_p.I269I|SLC28A1_uc010upf.1_Silent_p.I269I|SLC28A1_uc010upg.1_Silent_p.I269I	NM_004213	NP_004204	O00337	S28A1_HUMAN	solute carrier family 28, member 1 isoform 1	269	Helical; (Potential).				nucleobase, nucleoside and nucleotide metabolic process	integral to plasma membrane|membrane fraction	nucleoside binding			skin(2)|ovary(1)	3			BRCA - Breast invasive adenocarcinoma(143;0.0587)			TTCTGCCCATCATTGTCTTTT	0.597													18	81					0	0	0.010504	0	0
NTRK3	4916	broad.mit.edu	37	15	88423518	88423518	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:88423518G>A	uc002bme.1	-	18	2479	c.2317C>T	c.(2317-2319)CAA>TAA	p.Q773*	NTRK3_uc002bmh.2_Nonsense_Mutation_p.Q751*|NTRK3_uc002bmf.1_Nonsense_Mutation_p.Q759*	NM_001012338	NP_001012338	Q16288	NTRK3_HUMAN	neurotrophic tyrosine kinase, receptor, type 3	773	Cytoplasmic (Potential).|Protein kinase.				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity		ETV6/NTRK3(234)	soft_tissue(85)|kidney(66)|breast(56)|salivary_gland(26)|lung(22)|large_intestine(6)|ovary(6)|stomach(5)|central_nervous_system(3)|pancreas(3)|haematopoietic_and_lymphoid_tissue(2)|skin(1)	281			BRCA - Breast invasive adenocarcinoma(143;0.211)			TTTGAGAGTTGGAACCATGGC	0.493			T	ETV6	congenital fibrosarcoma|Secretory breast 					TSP Lung(13;0.10)			19	48					0	0	0.008871	0	0
NTRK3	4916	broad.mit.edu	37	15	88680699	88680699	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:88680699G>A	uc002bme.1	-	6	720	c.558C>T	c.(556-558)AAC>AAT	p.N186N	NTRK3_uc002bmh.2_Silent_p.N186N|NTRK3_uc002bmf.1_Silent_p.N186N|NTRK3_uc010upl.1_Silent_p.N88N|NTRK3_uc010bnh.1_Silent_p.N186N|NTRK3_uc002bmg.2_Silent_p.N186N	NM_001012338	NP_001012338	Q16288	NTRK3_HUMAN	neurotrophic tyrosine kinase, receptor, type 3	186	Extracellular (Potential).|LRRCT.				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity		ETV6/NTRK3(234)	soft_tissue(85)|kidney(66)|breast(56)|salivary_gland(26)|lung(22)|large_intestine(6)|ovary(6)|stomach(5)|central_nervous_system(3)|pancreas(3)|haematopoietic_and_lymphoid_tissue(2)|skin(1)	281			BRCA - Breast invasive adenocarcinoma(143;0.211)			TGCAGTAGAGGTTCTGGCTGT	0.592			T	ETV6	congenital fibrosarcoma|Secretory breast 					TSP Lung(13;0.10)			4	16					0	0	0.009096	0	0
ACAN	176	broad.mit.edu	37	15	89386841	89386841	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:89386841C>T	uc010upo.1	+	6	1387	c.1013C>T	c.(1012-1014)CCC>CTC	p.P338L	ACAN_uc002bmx.2_Missense_Mutation_p.P338L|ACAN_uc010upp.1_Missense_Mutation_p.P338L|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	338					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			ACGGGCTACCCCGACCCCTCA	0.647													11	29					0	0	0.010729	0	0
ACAN	176	broad.mit.edu	37	15	89400292	89400292	+	Silent	SNP	T	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:89400292T>C	uc010upo.1	+	12	4850	c.4476T>C	c.(4474-4476)TCT>TCC	p.S1492S	ACAN_uc010upp.1_Silent_p.S1492S|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	1492					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			GGCTTCCTTCTGGAGAGGTTG	0.507													16	34					0	0	0.004007	0	0
ACAN	176	broad.mit.edu	37	15	89400802	89400802	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:89400802G>A	uc010upo.1	+	12	5360	c.4986G>A	c.(4984-4986)GTG>GTA	p.V1662V	ACAN_uc010upp.1_Silent_p.V1662V|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	1662					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			TTTCCCTAGTGGATTCTACAT	0.527													10	92					0	0	0.006214	0	0
ACAN	176	broad.mit.edu	37	15	89401939	89401939	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:89401939C>T	uc010upo.1	+	12	6497	c.6123C>T	c.(6121-6123)TTC>TTT	p.F2041F	ACAN_uc010upp.1_Silent_p.F2041F|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	2041					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			CTTCTGAGTTCGTGGAGGGTG	0.502													9	19					0	0	0.008291	0	0
RLBP1	6017	broad.mit.edu	37	15	89760465	89760465	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:89760465C>T	uc002bnl.2	-	5	612	c.232G>A	c.(232-234)GAG>AAG	p.E78K		NM_000326	NP_000317	P12271	RLBP1_HUMAN	retinaldehyde binding protein 1	78					response to stimulus|visual perception|vitamin A metabolic process	cytoplasm|soluble fraction	retinol binding|transporter activity			central_nervous_system(1)	1	Lung NSC(78;0.0472)|all_lung(78;0.089)				Vitamin A(DB00162)	GCCAGCTCCTCCCCCGAGGCC	0.657													10	49					0	0	0.010729	0	0
ANPEP	290	broad.mit.edu	37	15	90340908	90340908	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:90340908G>A	uc002bop.3	-	15	2347	c.2055C>T	c.(2053-2055)TTC>TTT	p.F685F		NM_001150	NP_001141	P15144	AMPN_HUMAN	membrane alanine aminopeptidase precursor	685	Extracellular.|Metalloprotease.				angiogenesis|cell differentiation|interspecies interaction between organisms	cytosol|ER-Golgi intermediate compartment|integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|receptor activity|zinc ion binding			ovary(3)|skin(1)	4	Lung NSC(78;0.0221)|all_lung(78;0.0448)		BRCA - Breast invasive adenocarcinoma(143;0.0146)|KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)|STAD - Stomach adenocarcinoma(125;0.169)		Ezetimibe(DB00973)	CTTCAATCAGGAAGAGGGTGT	0.577													32	76					0	0	0.006230	0	0
SLCO3A1	28232	broad.mit.edu	37	15	92663747	92663747	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:92663747C>T	uc002bqx.2	+	5	1263	c.1062C>T	c.(1060-1062)ATC>ATT	p.I354I	SLCO3A1_uc002bqy.2_Silent_p.I354I|SLCO3A1_uc010boc.1_RNA|SLCO3A1_uc002bqz.1_Silent_p.I296I	NM_013272	NP_037404	Q9UIG8	SO3A1_HUMAN	solute carrier organic anion transporter family,	354	Helical; Name=7; (Potential).				sodium-independent organic anion transport	integral to membrane|plasma membrane	sodium-independent organic anion transmembrane transporter activity			skin(1)	1	Lung NSC(78;0.0158)|all_lung(78;0.0255)		BRCA - Breast invasive adenocarcinoma(143;0.0841)			TCACCTGCATCATCCTGGCCG	0.567													25	111					0	0	0.003954	0	0
SLCO3A1	28232	broad.mit.edu	37	15	92671613	92671613	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:92671613C>T	uc002bqx.2	+	7	1607	c.1406C>T	c.(1405-1407)TCG>TTG	p.S469L	SLCO3A1_uc002bqy.2_Missense_Mutation_p.S469L|SLCO3A1_uc010boc.1_RNA|SLCO3A1_uc002bqz.1_Missense_Mutation_p.S411L	NM_013272	NP_037404	Q9UIG8	SO3A1_HUMAN	solute carrier organic anion transporter family,	469	Extracellular (Potential).|Kazal-like.				sodium-independent organic anion transport	integral to membrane|plasma membrane	sodium-independent organic anion transmembrane transporter activity			skin(1)	1	Lung NSC(78;0.0158)|all_lung(78;0.0255)		BRCA - Breast invasive adenocarcinoma(143;0.0841)			GACCCCTACTCGCCCTGCAAT	0.532													10	80					0	0	0.010729	0	0
MCTP2	55784	broad.mit.edu	37	15	94884146	94884147	+	Missense_Mutation	DNP	AG	CA	CA			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:94884146_94884147AG>CA	uc002btj.2	+	6	1027_1028	c.962_963AG>CA	c.(961-963)AAG>ACA	p.K321T	MCTP2_uc010urg.1_Missense_Mutation_p.K321T|MCTP2_uc002bti.2_Missense_Mutation_p.K321T|MCTP2_uc010boj.2_Missense_Mutation_p.K50T|MCTP2_uc010bok.2_Missense_Mutation_p.K321T|MCTP2_uc002btg.3_Missense_Mutation_p.K321T|MCTP2_uc002bth.3_Missense_Mutation_p.K321T	NM_018349	NP_060819	Q6DN12	MCTP2_HUMAN	multiple C2 domains, transmembrane 2 isoform 1	321					calcium-mediated signaling	integral to membrane|membrane fraction	calcium ion binding			ovary(1)|pancreas(1)|skin(1)	3	Lung NSC(78;0.0821)|all_lung(78;0.148)		BRCA - Breast invasive adenocarcinoma(143;0.0323)|OV - Ovarian serous cystadenocarcinoma(32;0.0593)			GGTGATTTCAAGAGACACGTAA	0.376													5	13					0	0	0.004672	0	0
MCTP2	55784	broad.mit.edu	37	15	94899495	94899495	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:94899495C>T	uc002btj.2	+	8	1200	c.1135C>T	c.(1135-1137)CAG>TAG	p.Q379*	MCTP2_uc010urg.1_Nonsense_Mutation_p.Q379*|MCTP2_uc002bti.2_Nonsense_Mutation_p.Q379*|MCTP2_uc010boj.2_Nonsense_Mutation_p.Q108*|MCTP2_uc010bok.2_Nonsense_Mutation_p.Q379*|MCTP2_uc002btk.3_5'UTR|MCTP2_uc002btl.2_5'UTR	NM_018349	NP_060819	Q6DN12	MCTP2_HUMAN	multiple C2 domains, transmembrane 2 isoform 1	379	C2 2.				calcium-mediated signaling	integral to membrane|membrane fraction	calcium ion binding			ovary(1)|pancreas(1)|skin(1)	3	Lung NSC(78;0.0821)|all_lung(78;0.148)		BRCA - Breast invasive adenocarcinoma(143;0.0323)|OV - Ovarian serous cystadenocarcinoma(32;0.0593)			GATGTTTGTCCAGTTAAAACT	0.338													14	32					0	0	0.004007	0	0
MCTP2	55784	broad.mit.edu	37	15	94927293	94927293	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:94927293G>A	uc002btj.2	+	12	1690	c.1625G>A	c.(1624-1626)CGA>CAA	p.R542Q	MCTP2_uc002bti.2_Missense_Mutation_p.R542Q|MCTP2_uc010boj.2_Missense_Mutation_p.R271Q|MCTP2_uc010bok.2_Missense_Mutation_p.R542Q|MCTP2_uc002btk.3_Missense_Mutation_p.R130Q|MCTP2_uc002btl.2_Missense_Mutation_p.R130Q	NM_018349	NP_060819	Q6DN12	MCTP2_HUMAN	multiple C2 domains, transmembrane 2 isoform 1	542	C2 3.				calcium-mediated signaling	integral to membrane|membrane fraction	calcium ion binding			ovary(1)|pancreas(1)|skin(1)	3	Lung NSC(78;0.0821)|all_lung(78;0.148)		BRCA - Breast invasive adenocarcinoma(143;0.0323)|OV - Ovarian serous cystadenocarcinoma(32;0.0593)			GGCAATGACCGACTTCAGACG	0.433													5	13					0	0	0.001984	0	0
MCTP2	55784	broad.mit.edu	37	15	95019957	95019957	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:95019957C>T	uc002btj.2	+	21	2568	c.2503C>T	c.(2503-2505)CCC>TCC	p.P835S	MCTP2_uc010boj.2_Missense_Mutation_p.P564S|MCTP2_uc010bok.2_Missense_Mutation_p.P780S|MCTP2_uc002btl.2_Missense_Mutation_p.P423S	NM_018349	NP_060819	Q6DN12	MCTP2_HUMAN	multiple C2 domains, transmembrane 2 isoform 1	835					calcium-mediated signaling	integral to membrane|membrane fraction	calcium ion binding			ovary(1)|pancreas(1)|skin(1)	3	Lung NSC(78;0.0821)|all_lung(78;0.148)		BRCA - Breast invasive adenocarcinoma(143;0.0323)|OV - Ovarian serous cystadenocarcinoma(32;0.0593)			GCTTCGAAATCCCTATTCCAT	0.308													18	34					0	0	0.010504	0	0
PGPEP1L	145814	broad.mit.edu	37	15	99512832	99512832	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:99512832C>T	uc002bum.2	-	4	399	c.193G>A	c.(193-195)GAA>AAA	p.E65K	PGPEP1L_uc010bop.2_Missense_Mutation_p.E11K|PGPEP1L_uc002bun.2_RNA	NM_001102612	NP_001096082	A6NFU8	PGPIL_HUMAN	pyroglutamyl-peptidase 1-like protein	65		By similarity.			proteolysis		cysteine-type peptidase activity				0						CCAGACTGTTCCAGAATGATC	0.632													17	44					0	0	0.006122	0	0
LASS3	204219	broad.mit.edu	37	15	101031137	101031137	+	Splice_Site	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:101031137C>T	uc002bvz.2	-	5	676	c.174_splice	c.e5-1	p.K58_splice	LASS3_uc002bwa.2_Splice_Site_p.K69_splice|LASS3_uc002bwb.2_Splice_Site_p.K58_splice	NM_178842	NP_849164	Q8IU89	CERS3_HUMAN	LAG1 longevity assurance homolog 3							endoplasmic reticulum membrane|integral to membrane|nuclear membrane	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|sphingosine N-acyltransferase activity			ovary(2)|pancreas(1)|skin(1)	4	Lung NSC(78;0.0018)|all_lung(78;0.00278)|Melanoma(26;0.00852)		OV - Ovarian serous cystadenocarcinoma(32;0.000867)|LUSC - Lung squamous cell carcinoma(107;0.132)|Lung(145;0.161)			AGCAACAAATCTACAAAAATA	0.308													10	22					0	0	0.006214	0	0
LRRK1	79705	broad.mit.edu	37	15	101562664	101562664	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:101562664C>T	uc002bwr.2	+	15	2248	c.1929C>T	c.(1927-1929)ATC>ATT	p.I643I	LRRK1_uc010usb.1_RNA|LRRK1_uc010usc.1_RNA	NM_024652	NP_078928	Q38SD2	LRRK1_HUMAN	leucine-rich repeat kinase 1	643	Roc.				small GTPase mediated signal transduction	mitochondrion	ATP binding|GTP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			ovary(4)|lung(4)|central_nervous_system(3)|large_intestine(1)	12	Melanoma(26;0.00505)|Lung NSC(78;0.00793)|all_lung(78;0.0094)		OV - Ovarian serous cystadenocarcinoma(32;0.000932)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			AGATGATCATCGTGGGTCCCC	0.587													18	61					0	0	0.010504	0	0
LRRK1	79705	broad.mit.edu	37	15	101598270	101598270	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:101598270G>A	uc002bwr.2	+	29	4922	c.4603G>A	c.(4603-4605)GGG>AGG	p.G1535R	LRRK1_uc010usb.1_RNA|LRRK1_uc010usc.1_RNA|LRRK1_uc002bws.2_RNA	NM_024652	NP_078928	Q38SD2	LRRK1_HUMAN	leucine-rich repeat kinase 1	1535					small GTPase mediated signal transduction	mitochondrion	ATP binding|GTP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			ovary(4)|lung(4)|central_nervous_system(3)|large_intestine(1)	12	Melanoma(26;0.00505)|Lung NSC(78;0.00793)|all_lung(78;0.0094)		OV - Ovarian serous cystadenocarcinoma(32;0.000932)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			ACTGTGCTGTGGGAAGCAGAC	0.582													5	46					0	0	0.000602	0	0
PCSK6	5046	broad.mit.edu	37	15	101865106	101865106	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:101865106C>T	uc002bwy.2	-	18	2640	c.2326G>A	c.(2326-2328)GAG>AAG	p.E776K	PCSK6_uc010bpd.2_Missense_Mutation_p.E572K|PCSK6_uc010bpe.2_Missense_Mutation_p.E763K|PCSK6_uc002bxa.2_Missense_Mutation_p.E776K|PCSK6_uc002bxb.2_Missense_Mutation_p.E763K	NM_002570	NP_002561	P29122	PCSK6_HUMAN	paired basic amino acid cleaving system 4	776	CRM (Cys-rich motif).				glycoprotein metabolic process|nerve growth factor processing|nerve growth factor production|nerve growth factor receptor signaling pathway|regulation of BMP signaling pathway|secretion by cell	cell surface|endomembrane system|endoplasmic reticulum|extracellular matrix|extracellular space|Golgi lumen|membrane|soluble fraction	eukaryotic cell surface binding|heparin binding|nerve growth factor binding|serine-type endopeptidase activity			pancreas(2)	2	Lung NSC(78;0.00102)|all_lung(78;0.00128)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.000803)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			GTGTTCATCTCCTGGTGGTGA	0.562													11	32					0	0	0.013537	0	0
TARSL2	123283	broad.mit.edu	37	15	102201982	102201982	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:102201982G>A	uc002bxm.2	-	16	2060	c.2005C>T	c.(2005-2007)CAT>TAT	p.H669Y	TARSL2_uc002bxl.2_Missense_Mutation_p.H214Y|TARSL2_uc010usi.1_RNA	NM_152334	NP_689547	A2RTX5	SYTC2_HUMAN	threonyl-tRNA synthetase-like 2	669					threonyl-tRNA aminoacylation	cytoplasm	ATP binding|threonine-tRNA ligase activity			ovary(2)	2	Lung NSC(78;0.000991)|all_lung(78;0.00128)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.000268)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			ATGGCTCGATGAATGATCACA	0.333													7	18					0	0	0.004482	0	0
TARSL2	123283	broad.mit.edu	37	15	102242448	102242448	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:102242448G>A	uc002bxm.2	-	9	1270	c.1215C>T	c.(1213-1215)ATC>ATT	p.I405I	TARSL2_uc002bxl.2_5'UTR|TARSL2_uc010usi.1_RNA	NM_152334	NP_689547	A2RTX5	SYTC2_HUMAN	threonyl-tRNA synthetase-like 2	405					threonyl-tRNA aminoacylation	cytoplasm	ATP binding|threonine-tRNA ligase activity			ovary(2)	2	Lung NSC(78;0.000991)|all_lung(78;0.00128)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.000268)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			ATACCTTCCCGATCTTCCTGT	0.393													27	52					0	0	0.008361	0	0
OR4F6	390648	broad.mit.edu	37	15	102346466	102346466	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr15:102346466C>T	uc010utr.1	+	1	544	c.544C>T	c.(544-546)CCT>TCT	p.P182S		NM_001005326	NP_001005326	Q8NGB9	OR4F6_HUMAN	olfactory receptor, family 4, subfamily F,	182	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	Lung NSC(78;0.000991)|all_lung(78;0.00128)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.00039)|Lung(145;0.17)|LUSC - Lung squamous cell carcinoma(107;0.187)			TTGTGATCTTCCTCGATTTAT	0.373													14	59					0	0	0.002450	0	0
RGS11	8786	broad.mit.edu	37	16	321019	321019	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:321019C>T	uc002cgj.1	-	13	946	c.943G>A	c.(943-945)GCC>ACC	p.A315T	RGS11_uc002cgi.1_Missense_Mutation_p.A294T|RGS11_uc010bqs.1_Missense_Mutation_p.A304T|RGS11_uc002cgk.1_Missense_Mutation_p.A131T	NM_183337	NP_899180	O94810	RGS11_HUMAN	regulator of G-protein signalling 11 isoform 1	315	RGS.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|signal transducer activity			lung(1)|pancreas(1)	2		all_cancers(16;6.71e-07)|all_epithelial(16;1.59e-06)|Hepatocellular(16;0.000105)|Lung NSC(18;0.00769)|all_lung(18;0.0186)				ATGAAGTGGGCCCGCCCCACG	0.687													15	26					0	0	0.008871	0	0
DECR2	26063	broad.mit.edu	37	16	461008	461008	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:461008C>T	uc002chb.2	+	7	699	c.593C>T	c.(592-594)CCC>CTC	p.P198L	DECR2_uc002chc.2_Missense_Mutation_p.P114L|DECR2_uc010bqv.2_Missense_Mutation_p.P114L|DECR2_uc002chd.2_Missense_Mutation_p.P114L|DECR2_uc002che.1_RNA	NM_020664	NP_065715	Q9NUI1	DECR2_HUMAN	2,4-dienoyl CoA reductase 2	198						peroxisome	2,4-dienoyl-CoA reductase (NADPH) activity|binding				0		Hepatocellular(16;0.00015)				GAGTGGGGTCCCCAAAACATC	0.652													3	7					0	0	0.009096	0	0
RHOT2	89941	broad.mit.edu	37	16	720927	720927	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:720927C>T	uc002cip.2	+	10	742	c.675C>T	c.(673-675)GCC>GCT	p.A225A	RHOT2_uc002ciq.2_Silent_p.A118A|RHOT2_uc010bqy.2_5'UTR	NM_138769	NP_620124	Q8IXI1	MIRO2_HUMAN	ras homolog gene family, member T2	225	Mitochondrial intermembrane (Potential).				apoptosis|cellular homeostasis|mitochondrion transport along microtubule|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|integral to mitochondrial outer membrane|plasma membrane	calcium ion binding|GTP binding|GTPase activity|protein binding			pancreas(1)	1		Hepatocellular(780;0.0218)				CCCCGCAGGCCCTGGAGGACG	0.677													11	13					0	0	0.010729	0	0
SSTR5	6755	broad.mit.edu	37	16	1129933	1129933	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:1129933C>T	uc002ckq.2	+	1	1153	c.1065C>T	c.(1063-1065)GCC>GCT	p.A355A	LOC146336_uc002cko.2_5'Flank|LOC146336_uc002ckp.1_5'Flank	NM_001053	NP_001044	P35346	SSR5_HUMAN	somatostatin receptor 5	355	Cytoplasmic (Potential).				negative regulation of cell proliferation	integral to plasma membrane	somatostatin receptor activity			lung(1)	1		Hepatocellular(780;0.00369)			Octreotide(DB00104)	GCGCCGCAGCCAACGGGCTTA	0.716													10	8					0	0	0.008291	0	0
CACNA1H	8912	broad.mit.edu	37	16	1270464	1270464	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:1270464G>A	uc002cks.2	+	35	6780	c.6532G>A	c.(6532-6534)GCT>ACT	p.A2178T	CACNA1H_uc002ckt.2_Missense_Mutation_p.A2172T|CACNA1H_uc002cku.2_Missense_Mutation_p.A873T|CACNA1H_uc010brj.2_Missense_Mutation_p.A889T|CACNA1H_uc002ckv.2_Missense_Mutation_p.A867T	NM_021098	NP_066921	O95180	CAC1H_HUMAN	calcium channel, voltage-dependent, T type,	2178	Cytoplasmic (Potential).				aldosterone biosynthetic process|axon guidance|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|muscle contraction|myoblast fusion|positive regulation of acrosome reaction|regulation of heart contraction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(2)	2		Hepatocellular(780;0.00369)			Flunarizine(DB04841)|Mibefradil(DB01388)	GGCCGAGCCCGCTCTGGGTGC	0.746													17	44					0	0	0.006122	0	0
TPSB2	64499	broad.mit.edu	37	16	1279611	1279611	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:1279611G>A	uc002cky.2	-	3	212	c.189C>T	c.(187-189)CTC>CTT	p.L63L	TPSB2_uc010brk.1_RNA|TPSB2_uc002ckx.2_5'UTR	NM_024164	NP_077078	P20231	TRYB2_HUMAN	tryptase beta 2 precursor	63	Peptidase S1.				proteolysis	extracellular region	protein binding|serine-type endopeptidase activity				0		Hepatocellular(780;0.00369)				GGGGGTGGATGAGGGAGCCCC	0.687													6	33					0	0	0.001984	0	0
CRAMP1L	57585	broad.mit.edu	37	16	1716430	1716430	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:1716430C>T	uc010uvh.1	+	15	2865	c.2865C>T	c.(2863-2865)ATC>ATT	p.I955I	CRAMP1L_uc002cmf.2_RNA	NM_020825	NP_065876	Q96RY5	CRML_HUMAN	Crm, cramped-like	955						nucleus	DNA binding				0						CAGGTGCTATCGACTTAGCAG	0.572													4	12					0	0	0.009096	0	0
MAPK8IP3	23162	broad.mit.edu	37	16	1811274	1811274	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:1811274G>A	uc002cmk.2	+	13	1624	c.1504G>A	c.(1504-1506)GAG>AAG	p.E502K	MAPK8IP3_uc002cml.2_Missense_Mutation_p.E496K|MAPK8IP3_uc010uvl.1_Missense_Mutation_p.E503K	NM_015133	NP_055948	Q9UPT6	JIP3_HUMAN	mitogen-activated protein kinase 8 interacting	502	Potential.				vesicle-mediated transport	Golgi membrane	kinesin binding|MAP-kinase scaffold activity|protein kinase binding			breast(2)|central_nervous_system(1)	3						AGAAGAGGCGGAGGATGTAAG	0.607													15	78					0	0	0.010504	0	0
NUBP2	10101	broad.mit.edu	37	16	1836800	1836800	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:1836800C>T	uc002cmw.3	+	3	267	c.178C>T	c.(178-180)CGC>TGC	p.R60C	NUBP2_uc002cmx.3_Intron|NUBP2_uc010brx.2_5'UTR	NM_012225	NP_036357	Q9Y5Y2	NUBP2_HUMAN	nucleotide binding protein 2 (MinD homolog, E.	60						microtubule organizing center|nucleus	4 iron, 4 sulfur cluster binding|ATP binding|metal ion binding|protein binding				0						CAGTATCCCCCGCATGCTCGG	0.701													3	22					0	0	0.009096	0	0
SRRM2	23524	broad.mit.edu	37	16	2813042	2813042	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:2813042C>T	uc002crk.2	+	11	3062	c.2513C>T	c.(2512-2514)TCA>TTA	p.S838L	SRRM2_uc002crj.1_Missense_Mutation_p.S742L|SRRM2_uc002crl.1_Missense_Mutation_p.S838L|SRRM2_uc010bsu.1_Missense_Mutation_p.S742L	NM_016333	NP_057417	Q9UQ35	SRRM2_HUMAN	splicing coactivator subunit SRm300	838	Ser-rich.					Cajal body|catalytic step 2 spliceosome|nuclear speck	C2H2 zinc finger domain binding|protein N-terminus binding|RNA binding			ovary(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						CATTCCAGTTCATCTCCTCAT	0.493													55	136					0	0	0.014410	0	0
SRRM2	23524	broad.mit.edu	37	16	2815393	2815393	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:2815393C>T	uc002crk.2	+	11	5413	c.4864C>T	c.(4864-4866)CCT>TCT	p.P1622S	SRRM2_uc002crj.1_Missense_Mutation_p.P1526S|SRRM2_uc002crl.1_Missense_Mutation_p.P1622S|SRRM2_uc010bsu.1_Missense_Mutation_p.P1526S	NM_016333	NP_057417	Q9UQ35	SRRM2_HUMAN	splicing coactivator subunit SRm300	1622	Ser-rich.					Cajal body|catalytic step 2 spliceosome|nuclear speck	C2H2 zinc finger domain binding|protein N-terminus binding|RNA binding			ovary(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						TGATTCCTCTCCTGAACCTAA	0.562													16	32					0	0	0.004990	0	0
ZG16B	124220	broad.mit.edu	37	16	2882116	2882116	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:2882116C>T	uc002cru.2	+	4	659	c.583C>T	c.(583-585)CCA>TCA	p.P195S		NM_145252	NP_660295	Q96DA0	ZG16B_HUMAN	zymogen granule protein 16 homolog B precursor	195						extracellular region	sugar binding			ovary(1)	1						CACTGAGCCACCAGTTAATCT	0.552													38	44					0	0	0.006230	0	0
OR1F1	4992	broad.mit.edu	37	16	3254555	3254555	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:3254555C>T	uc010uwu.1	+	1	309	c.309C>T	c.(307-309)TTC>TTT	p.F103F		NM_012360	NP_036492	O43749	OR1F1_HUMAN	olfactory receptor, family 1, subfamily F,	103	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						AGATGTATTTCGTTTTCATGT	0.493													34	110					0	0	0.006230	0	0
OR1F1	4992	broad.mit.edu	37	16	3255033	3255033	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:3255033C>T	uc010uwu.1	+	1	787	c.787C>T	c.(787-789)CTG>TTG	p.L263L		NM_012360	NP_036492	O43749	OR1F1_HUMAN	olfactory receptor, family 1, subfamily F,	263	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TTTTAACCCTCTGTCCTCCCA	0.483													53	101					0	0	0.014410	0	0
MEFV	4210	broad.mit.edu	37	16	3293195	3293195	+	Silent	SNP	C	T	T	rs142352887	byFrequency	TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:3293195C>T	uc002cun.1	-	10	2332	c.2292G>A	c.(2290-2292)GGG>GGA	p.G764G		NM_000243	NP_000234	O15553	MEFV_HUMAN	Mediterranean fever protein	764	B30.2/SPRY.				inflammatory response	cytoplasm|microtubule|microtubule associated complex|nucleus	actin binding|zinc ion binding			central_nervous_system(2)|skin(2)|ovary(1)|lung(1)	6					Colchicine(DB01394)	CTGTGTTCTTCCCTCCATCAC	0.527													13	34					0	0	0.001855	0	0
MEFV	4210	broad.mit.edu	37	16	3298943	3298943	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:3298943C>T	uc002cun.1	-	4	1362	c.1322G>A	c.(1321-1323)CGA>CAA	p.R441Q		NM_000243	NP_000234	O15553	MEFV_HUMAN	Mediterranean fever protein	441					inflammatory response	cytoplasm|microtubule|microtubule associated complex|nucleus	actin binding|zinc ion binding			central_nervous_system(2)|skin(2)|ovary(1)|lung(1)	6					Colchicine(DB01394)	CCCATAGGATCGCTGCTCCTC	0.517													46	89					0	0	0.014410	0	0
OR2C1	4993	broad.mit.edu	37	16	3406776	3406776	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:3406776C>T	uc002cuw.1	+	1	888	c.836C>T	c.(835-837)TCG>TTG	p.S279L		NM_012368	NP_036500	O95371	OR2C1_HUMAN	olfactory receptor, family 2, subfamily C,	279	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						CTGTTCTACTCGTTGGTCACA	0.542													8	31					0	0	0.003080	0	0
SEPT12	124404	broad.mit.edu	37	16	4827869	4827869	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:4827869C>T	uc002cxq.2	-	10	1147	c.1006G>A	c.(1006-1008)GGA>AGA	p.G336R	SEPT12_uc002cxr.2_Missense_Mutation_p.G290R|SEPT12_uc010bty.2_RNA	NM_144605	NP_653206	Q8IYM1	SEP12_HUMAN	septin 12 isoform 2	336					cell cycle|cell division	cleavage furrow|midbody|perinuclear region of cytoplasm|septin complex|spindle|stress fiber	GDP binding|GTP binding|phosphatidylinositol binding|protein homodimerization activity			skin(1)	1						GTCAGCTGTCCTGGGGAGGCC	0.647													6	5					0	0	0.001984	0	0
SEC14L5	9717	broad.mit.edu	37	16	5053504	5053504	+	Missense_Mutation	SNP	A	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:5053504A>C	uc002cye.2	+	11	1412	c.1232A>C	c.(1231-1233)AAT>ACT	p.N411T		NM_014692	NP_055507	O43304	S14L5_HUMAN	SEC14-like 5	411	CRAL-TRIO.					integral to membrane|intracellular	transporter activity				0						GTTGAGGACAATTACCCAGAG	0.642													15	62					0	0	0.002450	0	0
USP7	7874	broad.mit.edu	37	16	8990881	8990881	+	Missense_Mutation	SNP	C	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:8990881C>A	uc002czl.2	-	26	2993	c.2794G>T	c.(2794-2796)GGG>TGG	p.G932W	USP7_uc010uyk.1_Missense_Mutation_p.G833W|USP7_uc002czj.2_RNA|USP7_uc010uyj.1_Missense_Mutation_p.G833W|USP7_uc002czk.2_Missense_Mutation_p.G916W	NM_003470	NP_003461	Q93009	UBP7_HUMAN	ubiquitin specific peptidase 7	932					interspecies interaction between organisms|multicellular organismal development|protein deubiquitination|regulation of sequence-specific DNA binding transcription factor activity|ubiquitin-dependent protein catabolic process	cytoplasm|PML body	cysteine-type endopeptidase activity|p53 binding|protein C-terminus binding|transcription factor binding|ubiquitin protein ligase binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(3)	3						GCTTTCTCCCCAAGCTCCACG	0.448													26	145					3.73148e-12	4.02503e-12	0.007291	1	0
GRIN2A	2903	broad.mit.edu	37	16	9858327	9858327	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:9858327G>A	uc002czo.3	-	13	3622	c.3074C>T	c.(3073-3075)TCA>TTA	p.S1025L	GRIN2A_uc010uym.1_Missense_Mutation_p.S1025L|GRIN2A_uc010uyn.1_Missense_Mutation_p.S868L|GRIN2A_uc002czr.3_Missense_Mutation_p.S1025L	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	1025	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	CTGGGATAGTGAATCCTGGCG	0.542													28	114					0	0	0.009535	0	0
GRIN2A	2903	broad.mit.edu	37	16	9923464	9923464	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:9923464A>G	uc002czo.3	-	9	2371	c.1823T>C	c.(1822-1824)CTT>CCT	p.L608P	GRIN2A_uc010uym.1_Missense_Mutation_p.L608P|GRIN2A_uc010uyn.1_Missense_Mutation_p.L451P|GRIN2A_uc002czr.3_Missense_Mutation_p.L608P	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	608	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	CAGGCCCCAAAGAAGCCATAT	0.448													24	44					0	0	0.005443	0	0
GRIN2A	2903	broad.mit.edu	37	16	10273906	10273906	+	Silent	SNP	G	A	A	rs145961628		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:10273906G>A	uc002czo.3	-	2	911	c.363C>T	c.(361-363)TTC>TTT	p.F121F	GRIN2A_uc010uym.1_Silent_p.F121F|GRIN2A_uc002czr.3_Silent_p.F121F|GRIN2A_uc010buk.2_Silent_p.F121F	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	121	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	AGATGGGGACGAAGGTGTGGG	0.602													19	36					0	0	0.012319	0	0
ATF7IP2	80063	broad.mit.edu	37	16	10525256	10525256	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:10525256C>T	uc002czu.2	+	3	1006	c.779C>T	c.(778-780)TCA>TTA	p.S260L	ATF7IP2_uc002czv.2_Missense_Mutation_p.S260L|ATF7IP2_uc010uyo.1_RNA|ATF7IP2_uc010uyp.1_Intron|ATF7IP2_uc002czw.2_Missense_Mutation_p.S260L|ATF7IP2_uc010uyq.1_RNA	NM_024997	NP_079273	Q5U623	MCAF2_HUMAN	activating transcription factor 7 interacting	260					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0						ACCAGTATTTCAAATTGTGAA	0.343													12	38					0	0	0.003163	0	0
CLEC16A	23274	broad.mit.edu	37	16	11272318	11272318	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:11272318G>A	uc002dao.2	+	24	3163	c.2933G>A	c.(2932-2934)AGC>AAC	p.S978N	CLEC16A_uc002dap.2_Missense_Mutation_p.S65N	NM_015226	NP_056041	Q2KHT3	CL16A_HUMAN	C-type lectin domain family 16, member A	978										ovary(1)|central_nervous_system(1)	2						GAGACAGCCAGCCTGTCCCCC	0.627													10	51					0	0	0.006214	0	0
TNP2	7142	broad.mit.edu	37	16	11362996	11362996	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:11362996G>A	uc002das.2	-	1	165	c.124C>T	c.(124-126)CGT>TGT	p.R42C	C16orf75_uc002daq.1_Intron	NM_005425	NP_005416	Q05952	STP2_HUMAN	transition protein 2 (during histone to	42					cell differentiation|multicellular organismal development|spermatogenesis	nucleosome|nucleus	DNA binding				0						CGGCTGCCACGATGGCTCTGT	0.632													84	182					0	0	0.014410	0	0
TNFRSF17	608	broad.mit.edu	37	16	12061492	12061492	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:12061492C>T	uc002dbv.2	+	3	561	c.343C>T	c.(343-345)CTT>TTT	p.L115F	TNFRSF17_uc010buy.2_3'UTR|TNFRSF17_uc010buz.2_Missense_Mutation_p.L66F	NM_001192	NP_001183	Q02223	TNR17_HUMAN	tumor necrosis factor receptor superfamily,	115	Cytoplasmic (Potential).				cell proliferation|multicellular organismal development	endomembrane system|integral to membrane|plasma membrane					0						TGAAATTATTCTTCCGAGAGG	0.478			T	IL2	intestinal T-cell lymphoma								36	48					0	0	0.004289	0	0
CPPED1	55313	broad.mit.edu	37	16	12758832	12758832	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:12758832C>T	uc002dca.3	-	4	967	c.856G>A	c.(856-858)GAG>AAG	p.E286K	CPPED1_uc002dcb.3_Missense_Mutation_p.E144K|CPPED1_uc002dbz.3_RNA	NM_018340	NP_060810	Q9BRF8	CPPED_HUMAN	calcineurin-like phosphoesterase domain	286							hydrolase activity|metal ion binding				0						ACAATTTTCTCGGCGGTGACC	0.527													7	62					0	0	0.001984	0	0
NOMO1	23420	broad.mit.edu	37	16	14968912	14968912	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:14968912C>T	uc002dcv.2	+	19	2140	c.2074C>T	c.(2074-2076)CCC>TCC	p.P692S		NM_014287	NP_055102	Q15155	NOMO1_HUMAN	nodal modulator 1 precursor	692	Extracellular (Potential).					integral to membrane	carbohydrate binding|carboxypeptidase activity|protein binding			ovary(1)	1						CGACAGTGAACCCGCCTTGGT	0.557													27	49					0	0	0.008361	0	0
RRN3	54700	broad.mit.edu	37	16	15168609	15168609	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:15168609G>A	uc002dde.2	-	11	1036	c.968C>T	c.(967-969)TCC>TTC	p.S323F	PDXDC1_uc002ddc.2_Intron|RRN3_uc010uzp.1_Missense_Mutation_p.S191F|RRN3_uc010uzq.1_Missense_Mutation_p.S293F	NM_018427	NP_060897	Q9NYV6	RRN3_HUMAN	RRN3 RNA polymerase I transcription factor	323					regulation of transcription, DNA-dependent|transcription initiation from RNA polymerase I promoter	nucleolus|nucleoplasm				ovary(1)	1						CTTCATGTAGGACAAAACCAA	0.323													6	20					0	0	0.001168	0	0
C16orf45	89927	broad.mit.edu	37	16	15528612	15528612	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:15528612G>A	uc002ddo.2	+	1	288	c.102G>A	c.(100-102)GGG>GGA	p.G34G		NM_033201	NP_149978	Q96MC5	CP045_HUMAN	hypothetical protein LOC89927 isoform 1	34				MELKQSLSTHLEAEKPLRRYGAVEETAWKTERLGRN -> M WGDLTETGCMGRRSAKKD (in Ref. 3; AAH23603).						ovary(1)	1						AGAGACTGGGGAGAAGTGAGT	0.532													14	37					0	0	0.003163	0	0
MYH11	4629	broad.mit.edu	37	16	15815375	15815375	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:15815375C>T	uc002ddy.2	-	32	4589	c.4482G>A	c.(4480-4482)GAG>GAA	p.E1494E	MYH11_uc002ddv.2_Silent_p.E1501E|MYH11_uc002ddw.2_Silent_p.E1494E|MYH11_uc002ddx.2_Silent_p.E1501E|MYH11_uc010bvg.2_Silent_p.E1326E|NDE1_uc010uzy.1_Intron|NDE1_uc002dds.2_Intron|MYH11_uc010bvh.2_Silent_p.E200E|NDE1_uc002ddz.1_5'Flank	NM_002474	NP_002465	P35749	MYH11_HUMAN	smooth muscle myosin heavy chain 11 isoform	1494	Potential.				axon guidance|cardiac muscle fiber development|elastic fiber assembly|skeletal muscle myosin thick filament assembly|smooth muscle contraction	cytosol|melanosome|muscle myosin complex|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			ovary(6)|skin(3)|lung(2)|breast(2)|upper_aerodigestive_tract(1)|pancreas(1)	15						CTTCCAAGGCCTCTTCAAGGG	0.542			T	CBFB	AML								14	43					0	0	0.002450	0	0
MYH11	4629	broad.mit.edu	37	16	15835382	15835382	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:15835382C>T	uc002ddy.2	-	22	2904	c.2797G>A	c.(2797-2799)GAG>AAG	p.E933K	MYH11_uc002ddv.2_Missense_Mutation_p.E940K|MYH11_uc002ddw.2_Missense_Mutation_p.E933K|MYH11_uc002ddx.2_Missense_Mutation_p.E940K|MYH11_uc010bvg.2_Missense_Mutation_p.E765K	NM_002474	NP_002465	P35749	MYH11_HUMAN	smooth muscle myosin heavy chain 11 isoform	933	Potential.				axon guidance|cardiac muscle fiber development|elastic fiber assembly|skeletal muscle myosin thick filament assembly|smooth muscle contraction	cytosol|melanosome|muscle myosin complex|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			ovary(6)|skin(3)|lung(2)|breast(2)|upper_aerodigestive_tract(1)|pancreas(1)	15						TCTTCCTCCTCCTCCAGGCGG	0.612			T	CBFB	AML								19	88					0	0	0.008871	0	0
MYH11	4629	broad.mit.edu	37	16	15835512	15835512	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:15835512C>T	uc002ddy.2	-	22	2774	c.2667G>A	c.(2665-2667)AAG>AAA	p.K889K	MYH11_uc002ddv.2_Silent_p.K896K|MYH11_uc002ddw.2_Silent_p.K889K|MYH11_uc002ddx.2_Silent_p.K896K|MYH11_uc010bvg.2_Silent_p.K721K	NM_002474	NP_002465	P35749	MYH11_HUMAN	smooth muscle myosin heavy chain 11 isoform	889	Potential.			EEK -> NSE (in Ref. 4).	axon guidance|cardiac muscle fiber development|elastic fiber assembly|skeletal muscle myosin thick filament assembly|smooth muscle contraction	cytosol|melanosome|muscle myosin complex|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			ovary(6)|skin(3)|lung(2)|breast(2)|upper_aerodigestive_tract(1)|pancreas(1)	15						GTAGCAGGTTCTTCTCCTCGG	0.637			T	CBFB	AML								17	73					0	0	0.004007	0	0
MYH11	4629	broad.mit.edu	37	16	15854489	15854489	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:15854489C>T	uc002ddy.2	-	11	1263	c.1156G>A	c.(1156-1158)GGA>AGA	p.G386R	MYH11_uc002ddv.2_Missense_Mutation_p.G393R|MYH11_uc002ddw.2_Missense_Mutation_p.G386R|MYH11_uc002ddx.2_Missense_Mutation_p.G393R|MYH11_uc010bvg.2_Missense_Mutation_p.G218R|MYH11_uc002dea.1_Missense_Mutation_p.G92R	NM_002474	NP_002465	P35749	MYH11_HUMAN	smooth muscle myosin heavy chain 11 isoform	386	Myosin head-like.				axon guidance|cardiac muscle fiber development|elastic fiber assembly|skeletal muscle myosin thick filament assembly|smooth muscle contraction	cytosol|melanosome|muscle myosin complex|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			ovary(6)|skin(3)|lung(2)|breast(2)|upper_aerodigestive_tract(1)|pancreas(1)	15						ACATTAATTCCCATGAGGTGG	0.443			T	CBFB	AML								9	93					0	0	0.004482	0	0
XYLT1	64131	broad.mit.edu	37	16	17232272	17232272	+	Silent	SNP	G	A	A	rs139802880	byFrequency	TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:17232272G>A	uc002dfa.2	-	8	1789	c.1704C>T	c.(1702-1704)ATC>ATT	p.I568I		NM_022166	NP_071449	Q86Y38	XYLT1_HUMAN	xylosyltransferase I	568	Lumenal (Potential).				glycosaminoglycan biosynthetic process	endoplasmic reticulum membrane|extracellular region|Golgi membrane|integral to membrane	acetylglucosaminyltransferase activity|protein xylosyltransferase activity			ovary(4)	4						ACCAGTCCACGATGTGCTTGT	0.582													7	38					0	0	0.006214	0	0
ABCC6P1	653190	broad.mit.edu	37	16	18602603	18602603	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:18602603C>T	uc002dfg.2	+	8	1001	c.801C>T	c.(799-801)TTC>TTT	p.F267F	ABCC6P1_uc010vam.1_Silent_p.F210F	NR_003569				SubName: Full=cDNA FLJ51267, highly similar to Multidrug resistance-associated protein 6;												0						GTGATGTCTTCAGGTTCACTG	0.592													27	57					0	0	0.004289	0	0
TMC7	79905	broad.mit.edu	37	16	19032967	19032967	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:19032967G>A	uc002dfq.2	+	4	607	c.477G>A	c.(475-477)GGG>GGA	p.G159G	TMC7_uc010vao.1_Silent_p.G159G|TMC7_uc002dfp.2_Silent_p.G159G|TMC7_uc010vap.1_Silent_p.G49G	NM_024847	NP_079123	Q7Z402	TMC7_HUMAN	transmembrane channel-like 7 isoform a	159	Extracellular (Potential).					integral to membrane				skin(2)|ovary(1)	3						TTGGCACTGGGATTCAGTCCT	0.418													12	56					0	0	0.002450	0	0
ITPRIPL2	162073	broad.mit.edu	37	16	19126433	19126433	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:19126433C>T	uc002dfu.3	+	1	1180	c.650C>T	c.(649-651)CCA>CTA	p.P217L	ITPRIPL2_uc002dft.2_5'UTR	NM_001034841	NP_001030013	Q3MIP1	IPIL2_HUMAN	inositol 1,4,5-triphosphate receptor interacting	217	Cytoplasmic (Potential).					integral to membrane				skin(2)	2						CCACCCTCACCATCGGGGGCC	0.697											OREG0023657	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	15	28					0	0	0.004007	0	0
SYT17	51760	broad.mit.edu	37	16	19194956	19194956	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:19194956G>A	uc002dfw.2	+	5	769	c.438G>A	c.(436-438)CGG>CGA	p.R146R	SYT17_uc002dfx.2_Silent_p.R85R|SYT17_uc002dfy.2_Silent_p.R142R|SYT17_uc002dfv.1_Silent_p.R85R	NM_016524	NP_057608	Q9BSW7	SYT17_HUMAN	B/K protein	146						membrane|synaptic vesicle	transporter activity			ovary(1)	1						TGCTCAGACGGACCTATAACC	0.542													10	48					0	0	0.006214	0	0
C16orf62	57020	broad.mit.edu	37	16	19641139	19641139	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:19641139C>T	uc002dgn.1	+	18	1563	c.1551C>T	c.(1549-1551)TTC>TTT	p.F517F	C16orf62_uc002dgo.1_Silent_p.F450F|C16orf62_uc002dgp.1_Silent_p.F266F	NM_020314	NP_064710	Q7Z3J2	CP062_HUMAN	hypothetical protein LOC57020	517						integral to membrane				ovary(1)	1						GCAAGCATTTCACGGTATGTG	0.348													15	32					0	0	0.003163	0	0
IQCK	124152	broad.mit.edu	37	16	19745082	19745082	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:19745082C>T	uc002dgr.2	+	4	1008	c.309C>T	c.(307-309)TCC>TCT	p.S103S	IQCK_uc002dgs.2_RNA|IQCK_uc010vat.1_Silent_p.S103S|IQCK_uc010bwc.2_RNA|IQCK_uc010vau.1_Silent_p.S15S	NM_153208	NP_694940	Q8N0W5	IQCK_HUMAN	IQ motif containing K	103										skin(1)	1						TTCCGGTTTCCCATTTCACCA	0.438													25	48					0	0	0.003330	0	0
GPRC5B	51704	broad.mit.edu	37	16	19883939	19883939	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:19883939G>A	uc002dgt.2	-	2	337	c.229C>T	c.(229-231)CTC>TTC	p.L77F	GPRC5B_uc010vav.1_Missense_Mutation_p.L103F	NM_016235	NP_057319	Q9NZH0	GPC5B_HUMAN	G protein-coupled receptor, family C, group 5,	77	Helical; Name=1; (Potential).									lung(1)|breast(1)|skin(1)	3						CGCACCAGGAGGATGAGCATC	0.637													9	33					0	0	0.008291	0	0
GP2	2813	broad.mit.edu	37	16	20328586	20328586	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:20328586G>A	uc002dgv.2	-	9	1457	c.1374C>T	c.(1372-1374)TTC>TTT	p.F458F	GP2_uc002dgw.2_Silent_p.F455F|GP2_uc002dgx.2_Silent_p.F311F|GP2_uc002dgy.2_Silent_p.F308F	NM_001007240	NP_001007241	P55259	GP2_HUMAN	zymogen granule membrane glycoprotein 2 isoform	458	ZP.					anchored to membrane|extracellular region|plasma membrane				ovary(3)|skin(1)	4						CACAATGCAGGAAAACTAGGT	0.403													8	28					0	0	0.004482	0	0
ACSM5	54988	broad.mit.edu	37	16	20451727	20451727	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:20451727G>A	uc002dhe.2	+	14	1865	c.1718G>A	c.(1717-1719)CGA>CAA	p.R573Q		NM_017888	NP_060358	Q6NUN0	ACSM5_HUMAN	acyl-CoA synthetase medium-chain family member 5	573					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding			ovary(2)	2						AGTAAATTGCGAAGTCAGGAG	0.488													6	31					0	0	0.010729	0	0
ACSM2A	123876	broad.mit.edu	37	16	20477025	20477025	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:20477025G>A	uc010bwe.2	+	4	603	c.364G>A	c.(364-366)GTG>ATG	p.V122M	ACSM2A_uc010bwd.1_RNA|ACSM2A_uc010vax.1_Missense_Mutation_p.V43M|ACSM2A_uc002dhf.3_Missense_Mutation_p.V122M|ACSM2A_uc002dhg.3_Missense_Mutation_p.V122M|ACSM2A_uc010vay.1_Missense_Mutation_p.V43M	NM_001010845	NP_001010845	Q08AH3	ACS2A_HUMAN	acyl-CoA synthetase medium-chain family member	122					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|metal ion binding			skin(2)|breast(1)	3						GTGGTGGCTGGTGATCCTGGG	0.582													9	25					0	0	0.013537	0	0
ACSM2A	123876	broad.mit.edu	37	16	20491904	20491904	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:20491904G>A	uc010bwe.2	+	12	1530	c.1291G>A	c.(1291-1293)GAC>AAC	p.D431N	ACSM2A_uc010vax.1_Missense_Mutation_p.D352N|ACSM2A_uc002dhf.3_Missense_Mutation_p.D431N|ACSM2A_uc002dhg.3_Missense_Mutation_p.D431N|ACSM2A_uc010vay.1_Missense_Mutation_p.D352N|ACSM2A_uc002dhh.3_Missense_Mutation_p.D61N	NM_001010845	NP_001010845	Q08AH3	ACS2A_HUMAN	acyl-CoA synthetase medium-chain family member	431					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|metal ion binding			skin(2)|breast(1)	3						GGACAATCCCGACAAGACAGC	0.493													42	59					0	0	0.014410	0	0
DCUN1D3	123879	broad.mit.edu	37	16	20873618	20873619	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:20873618_20873619GG>AA	uc002dhz.2	-	2	383_384	c.242_243CC>TT	c.(241-243)TCC>TTT	p.S81F	ERI2_uc002dht.3_Intron	NM_173475	NP_775746	Q8IWE4	DCNL3_HUMAN	DCN1, defective in cullin neddylation 1, domain	81					negative regulation of cell growth|negative regulation of S phase of mitotic cell cycle|positive regulation of apoptosis|response to gamma radiation|response to UV-C	perinuclear region of cytoplasm				ovary(2)	2				GBM - Glioblastoma multiforme(48;0.249)		CCTCGGCATTGGACTTGGACTC	0.564													40	107					0	0	0.004672	0	0
DNAH3	55567	broad.mit.edu	37	16	20996678	20996678	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:20996678C>T	uc010vbe.1	-	48	7386	c.7386G>A	c.(7384-7386)AAG>AAA	p.K2462K	DNAH3_uc010vbd.1_5'Flank	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	2462	AAA 4 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		CTGCGTAGTTCTTGGTGATCT	0.547													15	11					0	0	0.002450	0	0
DNAH3	55567	broad.mit.edu	37	16	21073850	21073850	+	Nonsense_Mutation	SNP	T	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:21073850T>A	uc010vbe.1	-	25	3673	c.3673A>T	c.(3673-3675)AAA>TAA	p.K1225*		NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	1225	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		ACAGTTTCTTTTTCCGAGCTG	0.428													24	50					0	0	0.003330	0	0
ZP2	7783	broad.mit.edu	37	16	21222689	21222689	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:21222689G>A	uc002dii.2	-	2	90	c.90C>T	c.(88-90)TTC>TTT	p.F30F	ZP2_uc010bwn.1_Silent_p.F69F|ZP2_uc010bwo.2_Silent_p.F69F	NM_003460	NP_003451	Q05996	ZP2_HUMAN	zona pellucida glycoprotein 2 preproprotein	30					binding of sperm to zona pellucida|intracellular protein transport	endoplasmic reticulum|Golgi apparatus|integral to membrane|multivesicular body|plasma membrane|proteinaceous extracellular matrix|stored secretory granule	acrosin binding|coreceptor activity			central_nervous_system(2)|ovary(1)	3				GBM - Glioblastoma multiforme(48;0.0573)		TCACAAGGGCGAAGAAGAGAG	0.463													27	51					0	0	0.008361	0	0
VWA3A	146177	broad.mit.edu	37	16	22163875	22163875	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:22163875G>A	uc010vbq.1	+	31	3421	c.3325G>A	c.(3325-3327)GGA>AGA	p.G1109R	VWA3A_uc010bxd.2_RNA|VWA3A_uc002dkg.3_Missense_Mutation_p.G187R|VWA3A_uc010bxe.1_Missense_Mutation_p.G211R	NM_173615	NP_775886	A6NCI4	VWA3A_HUMAN	von Willebrand factor A domain containing 3A	1109	VWFA 2.					extracellular region				skin(1)	1				GBM - Glioblastoma multiforme(48;0.0439)		CTTCACCGGCGGACGCTATCA	0.557													11	13					0	0	0.001855	0	0
SCNN1G	6340	broad.mit.edu	37	16	23197607	23197607	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:23197607G>A	uc002dlm.1	+	2	154	c.15G>A	c.(13-15)GAG>GAA	p.E5E		NM_001039	NP_001030	P51170	SCNNG_HUMAN	sodium channel, nonvoltage-gated 1, gamma	5	Cytoplasmic (By similarity).				excretion|sensory perception of taste	apical plasma membrane|integral to plasma membrane	ligand-gated sodium channel activity|WW domain binding			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6				GBM - Glioblastoma multiforme(48;0.0366)	Amiloride(DB00594)|Triamterene(DB00384)	CACCCGGAGAGAAGATCAAAG	0.587													8	25					0	0	0.003080	0	0
SCNN1B	6338	broad.mit.edu	37	16	23387119	23387119	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:23387119C>T	uc002dln.2	+	8	1389	c.1213C>T	c.(1213-1215)CTG>TTG	p.L405L		NM_000336	NP_000327	P51168	SCNNB_HUMAN	sodium channel, nonvoltage-gated 1, beta	405	Extracellular (By similarity).				excretion|sensory perception of taste	apical plasma membrane	ligand-gated sodium channel activity|WW domain binding			ovary(3)|breast(2)|large_intestine(1)|pancreas(1)	7				GBM - Glioblastoma multiforme(48;0.0465)	Amiloride(DB00594)|Triamterene(DB00384)	TGGCCACTACCTGTACCCACT	0.612													14	41					0	0	0.001855	0	0
CHP2	63928	broad.mit.edu	37	16	23767248	23767248	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:23767248G>A	uc002dmb.1	+	3	644	c.221G>A	c.(220-222)GGG>GAG	p.G74E		NM_022097	NP_071380	O43745	CHP2_HUMAN	hepatocellular carcinoma antigen gene 520	74	EF-hand 2.						calcium ion binding			central_nervous_system(1)	1				GBM - Glioblastoma multiforme(48;0.0144)		TTCCCCGATGGGTGAGGCTTG	0.582													14	23					0	0	0.003163	0	0
PRKCB	5579	broad.mit.edu	37	16	24046808	24046808	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:24046808G>A	uc002dmd.2	+	5	666	c.469G>A	c.(469-471)GAG>AAG	p.E157K	PRKCB_uc002dme.2_Missense_Mutation_p.E157K	NM_212535	NP_997700	P05771	KPCB_HUMAN	protein kinase C, beta isoform 1	157					apoptosis|B cell activation|B cell receptor signaling pathway|intracellular signal transduction|lipoprotein transport|platelet activation|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|synaptic transmission|transcription, DNA-dependent	cytosol|nucleus|plasma membrane	androgen receptor binding|ATP binding|chromatin binding|histone binding|histone kinase activity (H3-T6 specific)|ligand-dependent nuclear receptor transcription coactivator activity|protein kinase C activity|protein kinase C binding|zinc ion binding			ovary(3)|central_nervous_system(3)|lung(2)|large_intestine(1)	9					Vitamin E(DB00163)	GGACCACACGGAGCGCCGCGG	0.617													20	29					0	0	0.008871	0	0
PRKCB	5579	broad.mit.edu	37	16	24166058	24166058	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:24166058G>A	uc002dmd.2	+	10	1316	c.1119G>A	c.(1117-1119)CTG>CTA	p.L373L	PRKCB_uc002dme.2_Silent_p.L373L	NM_212535	NP_997700	P05771	KPCB_HUMAN	protein kinase C, beta isoform 1	373	Protein kinase.				apoptosis|B cell activation|B cell receptor signaling pathway|intracellular signal transduction|lipoprotein transport|platelet activation|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|synaptic transmission|transcription, DNA-dependent	cytosol|nucleus|plasma membrane	androgen receptor binding|ATP binding|chromatin binding|histone binding|histone kinase activity (H3-T6 specific)|ligand-dependent nuclear receptor transcription coactivator activity|protein kinase C activity|protein kinase C binding|zinc ion binding			ovary(3)|central_nervous_system(3)|lung(2)|large_intestine(1)	9					Vitamin E(DB00163)	TGAAGATCCTGAAGAAGGACG	0.552													5	48					0	0	0.001168	0	0
PRKCB	5579	broad.mit.edu	37	16	24196465	24196465	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:24196465G>A	uc002dmd.2	+	14	1764	c.1567G>A	c.(1567-1569)GAT>AAT	p.D523N	PRKCB_uc002dme.2_Missense_Mutation_p.D523N	NM_212535	NP_997700	P05771	KPCB_HUMAN	protein kinase C, beta isoform 1	523	Protein kinase.				apoptosis|B cell activation|B cell receptor signaling pathway|intracellular signal transduction|lipoprotein transport|platelet activation|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|synaptic transmission|transcription, DNA-dependent	cytosol|nucleus|plasma membrane	androgen receptor binding|ATP binding|chromatin binding|histone binding|histone kinase activity (H3-T6 specific)|ligand-dependent nuclear receptor transcription coactivator activity|protein kinase C activity|protein kinase C binding|zinc ion binding			ovary(3)|central_nervous_system(3)|lung(2)|large_intestine(1)	9					Vitamin E(DB00163)	GAAGTCCGTGGATTGGTGGGC	0.458													16	80					0	0	0.004007	0	0
CACNG3	10368	broad.mit.edu	37	16	24268270	24268270	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:24268270G>A	uc002dmf.2	+	1	1395	c.195G>A	c.(193-195)AGG>AGA	p.R65R		NM_006539	NP_006530	O60359	CCG3_HUMAN	voltage-dependent calcium channel gamma-3	65					regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|endocytic vesicle membrane|voltage-gated calcium channel complex	voltage-gated calcium channel activity				0				GBM - Glioblastoma multiforme(48;0.0809)		GGCTGTGGAGGACCTGCTGCC	0.428													9	27					0	0	0.008291	0	0
RBBP6	5930	broad.mit.edu	37	16	24573481	24573481	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:24573481C>T	uc002dmh.2	+	10	2328	c.1288C>T	c.(1288-1290)CGG>TGG	p.R430W	RBBP6_uc010vcb.1_Missense_Mutation_p.R297W|RBBP6_uc002dmi.2_Missense_Mutation_p.R430W|RBBP6_uc010bxr.2_Missense_Mutation_p.R430C|RBBP6_uc002dmk.2_Missense_Mutation_p.R297W	NM_006910	NP_008841	Q7Z6E9	RBBP6_HUMAN	retinoblastoma-binding protein 6 isoform 1	430					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	chromosome|nucleolus|ubiquitin ligase complex	nucleic acid binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(3)|pancreas(1)	4				GBM - Glioblastoma multiforme(48;0.0518)		TGGACCTTTTCGGTAAGCCTG	0.403													22	46					0	0	0.003330	0	0
SLC5A11	115584	broad.mit.edu	37	16	24873970	24873971	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:24873970_24873971GG>AA	uc002dmu.2	+	3	416_417	c.184_185GG>AA	c.(184-186)GGA>AAA	p.G62K	SLC5A11_uc002dms.2_5'UTR|SLC5A11_uc010vcd.1_Missense_Mutation_p.G62K|SLC5A11_uc002dmt.2_5'UTR|SLC5A11_uc010vce.1_Missense_Mutation_p.G62K|SLC5A11_uc010bxt.2_5'UTR	NM_052944	NP_443176	Q8WWX8	SC5AB_HUMAN	solute carrier family 5 (sodium/glucose	62	Cytoplasmic (Potential).				apoptosis|carbohydrate transport|sodium ion transport	integral to membrane|plasma membrane	polyol transmembrane transporter activity|symporter activity			ovary(2)	2				GBM - Glioblastoma multiforme(48;0.0365)		CTTCCTGGCTGGAGGGGACATG	0.46													13	31					0	0	0.004672	0	0
IL21R	50615	broad.mit.edu	37	16	27441437	27441437	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:27441437G>A	uc002doq.1	+	2	278	c.45G>A	c.(43-45)CAG>CAA	p.Q15Q	IL21R_uc002dor.1_Silent_p.Q15Q|IL21R_uc002dos.1_Silent_p.Q15Q	NM_181078	NP_851564	Q9HBE5	IL21R_HUMAN	interleukin 21 receptor precursor	15					natural killer cell activation	integral to membrane	interleukin-21 receptor activity			ovary(2)|lung(1)|breast(1)	4						TGCTGCTCCAGGGAGGTAAGT	0.687			T	BCL6	NHL								13	17					0	0	0.006122	0	0
KIAA0556	23247	broad.mit.edu	37	16	27733009	27733009	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:27733009C>T	uc002dow.2	+	14	1760	c.1736C>T	c.(1735-1737)GCT>GTT	p.A579V	KIAA0556_uc002dox.1_Missense_Mutation_p.A487V	NM_015202	NP_056017	O60303	K0556_HUMAN	hypothetical protein LOC23247	579										ovary(4)|large_intestine(2)|upper_aerodigestive_tract(1)|skin(1)	8						TACTGGACAGCTGATGGCGTA	0.502													6	22					0	0	0.001984	0	0
ATP2A1	487	broad.mit.edu	37	16	28914725	28914725	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:28914725G>A	uc002dro.1	+	21	3128	c.2944G>A	c.(2944-2946)GAA>AAA	p.E982K	uc010vct.1_Intron|ATP2A1_uc002drn.1_Missense_Mutation_p.E982K|ATP2A1_uc002drp.1_Missense_Mutation_p.E857K	NM_173201	NP_775293	O14983	AT2A1_HUMAN	ATPase, Ca++ transporting, fast twitch 1 isoform	982	Helical; Name=10; (By similarity).				apoptosis in response to endoplasmic reticulum stress|apoptotic mitochondrial changes|ATP biosynthetic process|calcium ion import|elevation of endoplasmic reticulum calcium ion concentration|elevation of mitochondrial calcium ion concentration|maintenance of mitochondrion location|negative regulation of striated muscle contraction|platelet activation|positive regulation of fast-twitch skeletal muscle fiber contraction|reduction of endoplasmic reticulum calcium ion concentration|relaxation of skeletal muscle|response to endoplasmic reticulum stress	endoplasmic reticulum membrane|ER-Golgi intermediate compartment|H zone|I band|microsome|perinuclear region of cytoplasm|platelet dense tubular network membrane|sarcoplasmic reticulum|sarcoplasmic reticulum membrane	ATP binding|ATP binding|calcium ion binding|calcium ion binding|calcium-transporting ATPase activity|protein homodimerization activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						TGGGCTCGACGAAATCCTCAA	0.577													14	53					0	0	0.004007	0	0
RABEP2	79874	broad.mit.edu	37	16	28925752	28925752	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:28925752G>A	uc002drq.2	-	5	747	c.699C>T	c.(697-699)TCC>TCT	p.S233S	uc010vct.1_Intron|RABEP2_uc010vdf.1_Silent_p.S162S|RABEP2_uc010byn.2_Silent_p.S233S|RABEP2_uc002drr.2_Silent_p.S233S	NM_024816	NP_079092	Q9H5N1	RABE2_HUMAN	rabaptin, RAB GTPase binding effector protein 2	233					endocytosis|protein transport	early endosome	growth factor activity|GTPase activator activity			ovary(1)|breast(1)|skin(1)	3						AGGAGGAGATGGAGGCGCTGT	0.687													12	16					0	0	0.013537	0	0
LOC440354	440354	broad.mit.edu	37	16	29576683	29576683	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:29576683C>T	uc010vdt.1	-	3	811	c.389G>A	c.(388-390)AGG>AAG	p.R130K	LOC440354_uc002dsp.3_RNA|uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|LOC440354_uc010bza.1_RNA|LOC440354_uc002dtj.2_Intron|LOC440354_uc010vds.1_RNA					RecName: Full=Putative uncharacterized SMG1-like protein;												0						CTGTGATTTCCTCATGTCTTT	0.493													3	9					0	0	0.004672	0	0
ASPHD1	253982	broad.mit.edu	37	16	29912865	29912865	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:29912865C>T	uc002dut.2	+	1	719	c.573C>T	c.(571-573)TTC>TTT	p.F191F	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|SEZ6L2_uc002dup.3_5'Flank|SEZ6L2_uc002dur.3_5'Flank|SEZ6L2_uc002duq.3_5'Flank|SEZ6L2_uc002dus.3_5'Flank|SEZ6L2_uc010vec.1_5'Flank|SEZ6L2_uc010ved.1_5'Flank|ASPHD1_uc002duu.3_RNA|ASPHD1_uc010bzi.2_RNA	NM_181718	NP_859069	Q5U4P2	ASPH1_HUMAN	aspartate beta-hydroxylase domain containing 1	191	Lumenal (Potential).				peptidyl-amino acid modification	integral to endoplasmic reticulum membrane	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peptide-aspartate beta-dioxygenase activity				0						GCCTGCTTTTCCTACCAGACC	0.672													19	74					0	0	0.008871	0	0
CORO1A	11151	broad.mit.edu	37	16	30199684	30199684	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:30199684G>A	uc002dww.2	+	10	1190	c.1068G>A	c.(1066-1068)TCG>TCA	p.S356S	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|CORO1A_uc010bzq.2_Silent_p.S356S|CORO1A_uc010bzr.2_Intron|CORO1A_uc002dwx.2_Silent_p.S250S|CORO1A_uc002dwy.1_3'UTR|LOC606724_uc002dwz.1_5'Flank	NM_007074	NP_009005	P31146	COR1A_HUMAN	coronin, actin binding protein, 1A	356					cell-substrate adhesion|innate immune response|leukocyte chemotaxis|negative regulation of actin nucleation|phagolysosome assembly|positive chemotaxis|regulation of cell shape|uropod organization	actin filament|cortical actin cytoskeleton|lamellipodium|phagocytic cup|phagocytic vesicle membrane	actin filament binding|phosphatidylinositol 3-kinase binding|protein C-terminus binding|protein homodimerization activity				0						GCCCACAGTCGGACCTGTTCC	0.677													19	73					0	0	0.007413	0	0
ZNF768	79724	broad.mit.edu	37	16	30536387	30536387	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:30536387G>A	uc002dyk.3	-	2	1250	c.1074C>T	c.(1072-1074)TCC>TCT	p.S358S	ZNF768_uc010vex.1_Silent_p.S327S|uc002dyl.1_5'Flank|ZNF768_uc010vew.1_Silent_p.S327S	NM_024671	NP_078947	Q9H5H4	ZN768_HUMAN	zinc finger protein 768	358	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	DNA-directed RNA polymerase II, core complex	DNA binding|zinc ion binding				0						GCAGGAGGTAGGAGCTGTCGC	0.637													8	17					0	0	0.008291	0	0
PHKG2	5261	broad.mit.edu	37	16	30762575	30762575	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:30762575C>T	uc002dzk.1	+	3	337	c.244C>T	c.(244-246)CGC>TGC	p.R82C	PHKG2_uc002dzi.1_Missense_Mutation_p.R82C|PHKG2_uc002dzj.1_5'UTR|PHKG2_uc002dzl.1_Missense_Mutation_p.R82C	NM_000294	NP_000285	P15735	PHKG2_HUMAN	phosphorylase kinase, gamma 2 (testis)	82	Protein kinase.				glucose metabolic process|glycogen biosynthetic process|glycogen catabolic process	cytosol	ATP binding|calmodulin binding|phosphorylase kinase activity			ovary(1)	1			Colorectal(24;0.198)			ACACATCCTTCGCCAGGTCGC	0.622													20	24					0	0	0.014323	0	0
SETD1A	9739	broad.mit.edu	37	16	30982726	30982726	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:30982726C>T	uc002ead.1	+	13	3730	c.3044C>T	c.(3043-3045)TCC>TTC	p.S1015F		NM_014712	NP_055527	O15047	SET1A_HUMAN	SET domain containing 1A	1015	Ser-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nuclear speck|Set1C/COMPASS complex	histone-lysine N-methyltransferase activity|nucleotide binding|protein binding|RNA binding			ovary(2)|skin(1)	3						GATTCGTCTTCCAAATGTTCT	0.488													28	97					0	0	0.012213	0	0
PRSS8	5652	broad.mit.edu	37	16	31143543	31143543	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:31143543C>T	uc002ebc.3	-	6	1151	c.819G>A	c.(817-819)CTG>CTA	p.L273L	PRSS8_uc010vfe.1_Silent_p.L219L	NM_002773	NP_002764	Q16651	PRSS8_HUMAN	prostasin preproprotein	273	Peptidase S1.				proteolysis	extracellular space|integral to membrane|plasma membrane	serine-type endopeptidase activity				0						AGCTGGAGGCCAGAGTGTACA	0.627													7	14					0	0	0.004482	0	0
ITGAX	3687	broad.mit.edu	37	16	31367283	31367283	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:31367283G>A	uc002ebu.1	+	2	174	c.107G>A	c.(106-108)GGG>GAG	p.G36E	ITGAX_uc010cao.1_Missense_Mutation_p.G36E|ITGAX_uc002ebt.2_Missense_Mutation_p.G36E	NM_000887	NP_000878	P20702	ITAX_HUMAN	integrin alpha X precursor	36	Extracellular (Potential).|FG-GAP 1.				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration|organ morphogenesis	integrin complex	protein binding|receptor activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						GACAGCGCTGGGTTTGGAGAC	0.587													21	77					0	0	0.002780	0	0
MYLK3	91807	broad.mit.edu	37	16	46781992	46781992	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:46781992C>T	uc002eei.3	-	1	230	c.114G>A	c.(112-114)CAG>CAA	p.Q38Q	MYLK3_uc010vge.1_Intron	NM_182493	NP_872299	Q32MK0	MYLK3_HUMAN	myosin light chain kinase 3	38					cardiac myofibril assembly|cellular response to interleukin-1|positive regulation of sarcomere organization|regulation of vascular permeability involved in acute inflammatory response|sarcomere organization|sarcomerogenesis	cytosol	ATP binding|calmodulin-dependent protein kinase activity|myosin light chain kinase activity			stomach(2)|skin(2)|large_intestine(1)|ovary(1)|central_nervous_system(1)	7		all_cancers(37;0.00023)|all_epithelial(9;0.000543)|all_lung(18;0.00585)|Lung NSC(13;0.0496)|Breast(268;0.116)				AGTGCAGGAGCTGGTCCACCT	0.602													31	44					0	0	0.013726	0	0
GPT2	84706	broad.mit.edu	37	16	46956280	46956280	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:46956280C>T	uc002eel.2	+	9	1258	c.1164C>T	c.(1162-1164)GTC>GTT	p.V388V	GPT2_uc002eem.2_Silent_p.V288V|GPT2_uc002een.2_5'Flank	NM_133443	NP_597700	Q8TD30	ALAT2_HUMAN	glutamic pyruvate transaminase 2 isoform 1	388					2-oxoglutarate metabolic process|cellular amino acid biosynthetic process|L-alanine metabolic process	mitochondrial matrix	L-alanine:2-oxoglutarate aminotransferase activity|pyridoxal phosphate binding			ovary(1)|skin(1)	2		all_cancers(37;0.0276)|all_epithelial(9;0.0498)|all_lung(18;0.0522)			L-Alanine(DB00160)|L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)	TGGACATTGTCGTGAACCCCC	0.627													16	42					0	0	0.003163	0	0
DNAJA2	10294	broad.mit.edu	37	16	47001557	47001557	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:47001557G>A	uc002eeo.2	-	5	587	c.445C>T	c.(445-447)CAA>TAA	p.Q149*	DNAJA2_uc002eep.2_Nonsense_Mutation_p.Q66*	NM_005880	NP_005871	O60884	DNJA2_HUMAN	DnaJ subfamily A member 2	149	CR-type.|CXXCXGXG motif.				positive regulation of cell proliferation|protein folding|response to heat	membrane	ATP binding|heat shock protein binding|metal ion binding|unfolded protein binding			lung(1)	1		all_cancers(37;0.00125)|all_lung(18;0.00338)|all_epithelial(9;0.00358)|Lung NSC(13;0.0309)|Breast(268;0.116)				TTTCCGCCTTGGCTAAAGCAA	0.468													20	71					0	0	0.012319	0	0
PHKB	5257	broad.mit.edu	37	16	47644793	47644793	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:47644793A>G	uc002eev.3	+	14	1472	c.1420A>G	c.(1420-1422)AAG>GAG	p.K474E	PHKB_uc002eeu.3_Missense_Mutation_p.K467E	NM_000293	NP_000284	Q93100	KPBB_HUMAN	phosphorylase kinase, beta isoform a	474					glucose metabolic process|glycogen catabolic process	cytosol|plasma membrane	calmodulin binding|glucan 1,4-alpha-glucosidase activity			ovary(1)|large_intestine(1)|breast(1)	3		all_cancers(37;0.00447)|all_lung(18;0.00616)|Lung NSC(13;0.0418)|Breast(268;0.203)				TGTCCCACTAAAGGATCAACG	0.358													10	27					0	0	0.013537	0	0
ABCC11	85320	broad.mit.edu	37	16	48239429	48239429	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:48239429G>A	uc002eff.1	-	12	2050	c.1700C>T	c.(1699-1701)TCG>TTG	p.S567L	ABCC11_uc002efg.1_Missense_Mutation_p.S567L|ABCC11_uc002efh.1_Missense_Mutation_p.S567L|ABCC11_uc010vgk.1_RNA	NM_033151	NP_149163	Q96J66	ABCCB_HUMAN	ATP-binding cassette, sub-family C, member 11	567	ABC transporter 1.|Cytoplasmic (Potential).					integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(3)|skin(2)|central_nervous_system(1)	6		all_cancers(37;0.127)|all_lung(18;0.132)|Breast(268;0.166)				CACCCCCACCGAGCCCTCGAG	0.627									Cerumen_Type				23	46					0	0	0.005443	0	0
ABCC11	85320	broad.mit.edu	37	16	48261857	48261857	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:48261857G>A	uc002eff.1	-	3	605	c.255C>T	c.(253-255)CCC>CCT	p.P85P	ABCC11_uc002efg.1_Silent_p.P85P|ABCC11_uc002efh.1_Silent_p.P85P|ABCC11_uc010vgl.1_Silent_p.P85P	NM_033151	NP_149163	Q96J66	ABCCB_HUMAN	ATP-binding cassette, sub-family C, member 11	85	Cytoplasmic (Potential).					integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(3)|skin(2)|central_nervous_system(1)	6		all_cancers(37;0.127)|all_lung(18;0.132)|Breast(268;0.166)				CATTGTCCAGGGGCTGGGGGG	0.498									Cerumen_Type				16	54					0	0	0.003163	0	0
C16orf78	123970	broad.mit.edu	37	16	49430414	49430414	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:49430414C>T	uc002efr.2	+	4	518	c.475C>T	c.(475-477)CCC>TCC	p.P159S		NM_144602	NP_653203	Q8WTQ4	CP078_HUMAN	hypothetical protein LOC123970	159										central_nervous_system(1)	1						TGTCTTAGATCCCATGTTACA	0.493													22	42					0	0	0.012319	0	0
C16orf78	123970	broad.mit.edu	37	16	49433081	49433081	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:49433081C>T	uc002efr.2	+	5	733	c.690C>T	c.(688-690)CTC>CTT	p.L230L		NM_144602	NP_653203	Q8WTQ4	CP078_HUMAN	hypothetical protein LOC123970	230										central_nervous_system(1)	1						GGACCTTGCTCAAGTTGTGCA	0.468													27	46					0	0	0.007291	0	0
ADCY7	113	broad.mit.edu	37	16	50325802	50325802	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:50325802G>A	uc002egd.1	+	3	799	c.531G>A	c.(529-531)GGG>GGA	p.G177G	ADCY7_uc002egb.1_Silent_p.G177G|ADCY7_uc002egc.1_Silent_p.G177G	NM_001114	NP_001105	P51828	ADCY7_HUMAN	adenylate cyclase 7	177	Helical; (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to ethanol|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|positive regulation of cAMP biosynthetic process|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding			skin(1)	1		all_cancers(37;0.0127)		GBM - Glioblastoma multiforme(240;0.195)	Bromocriptine(DB01200)	TCCGGGTGGGGCTGCAGGTGA	0.662													11	26					0	0	0.013537	0	0
NOD2	64127	broad.mit.edu	37	16	50733855	50733855	+	Missense_Mutation	SNP	C	T	T	rs144368009		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:50733855C>T	uc002egm.1	+	2	635	c.530C>T	c.(529-531)CCG>CTG	p.P177L	NOD2_uc010cbj.1_Missense_Mutation_p.P150L|NOD2_uc010cbk.1_Missense_Mutation_p.P150L|NOD2_uc002egl.1_5'UTR	NM_022162	NP_071445	Q9HC29	NOD2_HUMAN	nucleotide-binding oligomerization domain	177	CARD 2.				activation of MAPK activity involved in innate immune response|cytokine production involved in immune response|detection of bacterium|detection of muramyl dipeptide|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of macrophage apoptosis|nucleotide-binding oligomerization domain containing 2 signaling pathway|positive regulation of B cell activation|positive regulation of dendritic cell antigen processing and presentation|positive regulation of epithelial cell proliferation|positive regulation of ERK1 and ERK2 cascade|positive regulation of gamma-delta T cell activation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-1 beta secretion|positive regulation of interleukin-10 production|positive regulation of interleukin-17 production|positive regulation of interleukin-6 production|positive regulation of JNK cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of Notch signaling pathway|positive regulation of phosphatidylinositol 3-kinase activity|positive regulation of prostaglandin-E synthase activity|positive regulation of prostaglandin-endoperoxide synthase activity|positive regulation of stress-activated MAPK cascade|positive regulation of tumor necrosis factor production|positive regulation of type 2 immune response|protein oligomerization|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cell surface|cytosol|plasma membrane|vesicle	ATP binding|CARD domain binding|muramyl dipeptide binding|protein kinase binding			ovary(3)|skin(1)	4		all_cancers(37;0.0156)				ATCTTCACACCGTCCCAGAGG	0.542													5	18					0	0	0.001168	0	0
SALL1	6299	broad.mit.edu	37	16	51171035	51171035	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:51171035G>A	uc010vgs.1	-	3	3994	c.3963C>T	c.(3961-3963)ATC>ATT	p.I1321I	SALL1_uc010vgr.1_Silent_p.I1224I|SALL1_uc010cbv.2_Silent_p.I173I	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	1321					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			AACTCGTGACGATCTCCTTGC	0.592													6	27					0	0	0.001168	0	0
SALL1	6299	broad.mit.edu	37	16	51171368	51171368	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:51171368G>A	uc010vgs.1	-	3	3661	c.3630C>T	c.(3628-3630)CCC>CCT	p.P1210P	SALL1_uc010vgr.1_Silent_p.P1113P|SALL1_uc010cbv.2_Silent_p.P62P	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	1210					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			GGAACTTGACGGGATTGCCTC	0.557													9	31					0	0	0.004482	0	0
SALL1	6299	broad.mit.edu	37	16	51172967	51172967	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:51172967G>A	uc010vgs.1	-	2	3197	c.3166C>T	c.(3166-3168)CTG>TTG	p.L1056L	SALL1_uc010vgr.1_Silent_p.L959L|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	1056					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			TGGGATGGCAGATCTCGCATC	0.478													12	23					0	0	0.010729	0	0
SALL1	6299	broad.mit.edu	37	16	51173548	51173548	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:51173548C>T	uc010vgs.1	-	2	2616	c.2585G>A	c.(2584-2586)AGC>AAC	p.S862N	SALL1_uc010vgr.1_Missense_Mutation_p.S765N|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	862					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			AGCAGCGATGCTCGACATCTC	0.547													17	53					0	0	0.006122	0	0
SALL1	6299	broad.mit.edu	37	16	51175015	51175015	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:51175015G>A	uc010vgs.1	-	2	1149	c.1118C>T	c.(1117-1119)TCG>TTG	p.S373L	SALL1_uc010vgr.1_Missense_Mutation_p.S276L|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	373	Poly-Ser.				adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			TGGTGAGGACGATGATGAGAC	0.512													19	40					0	0	0.007413	0	0
SALL1	6299	broad.mit.edu	37	16	51175867	51175867	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:51175867G>A	uc010vgs.1	-	2	297	c.266C>T	c.(265-267)CCC>CTC	p.P89L	SALL1_uc010vgr.1_5'UTR|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	89					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			ATCAGGAGGGGGGCTGGGGGA	0.438													14	98					0	0	0.004007	0	0
TOX3	27324	broad.mit.edu	37	16	52502482	52502482	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:52502482C>T	uc002egw.2	-	2	263	c.92G>A	c.(91-93)GGA>GAA	p.G31E	TOX3_uc010vgt.1_Missense_Mutation_p.G27E|TOX3_uc010vgu.1_Missense_Mutation_p.G31E	NM_001080430	NP_001073899	O15405	TOX3_HUMAN	TOX high mobility group box family member 3	31					apoptosis|negative regulation of neuron apoptosis|positive regulation of anti-apoptosis|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	chromatin binding|estrogen response element binding|phosphoprotein binding|protein homodimerization activity				0						ATTATTATTTCCAAACTGAAA	0.363													4	63					0	0	0.009096	0	0
RBL2	5934	broad.mit.edu	37	16	53476717	53476717	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:53476717C>T	uc002ehi.3	+	3	637	c.519C>T	c.(517-519)ATC>ATT	p.I173I	RBL2_uc010vgv.1_Silent_p.I99I	NM_005611	NP_005602	Q08999	RBL2_HUMAN	retinoblastoma-like 2 (p130)	173					cell cycle|chromatin modification|regulation of cell cycle|regulation of lipid kinase activity|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|protein binding			ovary(2)|lung(2)|upper_aerodigestive_tract(1)	5						TTCAGGACATCTTTAAATACC	0.413													65	127					0	0	0.014410	0	0
RPGRIP1L	23322	broad.mit.edu	37	16	53675229	53675229	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:53675229G>A	uc002ehp.2	-	18	2906	c.2842C>T	c.(2842-2844)CCT>TCT	p.P948S	RPGRIP1L_uc002eho.3_Missense_Mutation_p.P948S|RPGRIP1L_uc010vgy.1_Missense_Mutation_p.P948S|RPGRIP1L_uc010cbx.2_Missense_Mutation_p.P948S|RPGRIP1L_uc010vgz.1_Missense_Mutation_p.P948S	NM_015272	NP_056087	Q68CZ1	FTM_HUMAN	RPGRIP1-like isoform a	948					negative regulation of G-protein coupled receptor protein signaling pathway	cell-cell junction|centrosome|cilium axoneme|microtubule basal body	thromboxane A2 receptor binding			ovary(1)	1		all_cancers(37;0.0973)				GATGCTGGAGGAAGTCTTTGA	0.348													85	243					0	0	0.014410	0	0
CES7	221223	broad.mit.edu	37	16	55880749	55880749	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:55880749C>T	uc002eip.2	-	12	1576	c.1427G>A	c.(1426-1428)GGA>GAA	p.G476E	CES7_uc002eio.2_Missense_Mutation_p.G426E|CES7_uc002eiq.2_Missense_Mutation_p.G237E|CES7_uc002eir.2_Missense_Mutation_p.G370E	NM_001143685	NP_001137157	Q6NT32	EST5A_HUMAN	carboxylesterase 7 isoform 1	476						extracellular region	carboxylesterase activity|methyl indole-3-acetate esterase activity|methyl jasmonate esterase activity|methyl salicylate esterase activity				0				all cancers(182;0.229)|Epithelial(162;0.231)		CTCCGTGGCTCCTTCTGAAGG	0.443													56	70					0	0	0.014410	0	0
SLC12A3	6559	broad.mit.edu	37	16	56916348	56916348	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:56916348C>T	uc010ccm.2	+	13	1637	c.1608C>T	c.(1606-1608)TTC>TTT	p.F536F	SLC12A3_uc002ekd.3_Silent_p.F536F|SLC12A3_uc010ccn.2_Silent_p.F535F	NM_001126108	NP_001119580	P55017	S12A3_HUMAN	solute carrier family 12, member 3 isoform 3	536	Helical; (Potential).				sodium ion transmembrane transport	apical plasma membrane|integral to plasma membrane|membrane fraction	sodium:chloride symporter activity			ovary(2)|breast(1)	3					Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Chlorothiazide(DB00880)|Diazoxide(DB01119)|Hydrochlorothiazide(DB00999)|Metolazone(DB00524)|Polythiazide(DB01324)|Quinethazone(DB01325)	CCAACTTCTTCCTCTGCTCCT	0.448													15	51					0	0	0.004990	0	0
HERPUD1	9709	broad.mit.edu	37	16	56976078	56976078	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:56976078C>T	uc002eke.1	+	7	1349	c.940C>T	c.(940-942)CCG>TCG	p.P314S	HERPUD1_uc002ekf.1_Missense_Mutation_p.P313S|HERPUD1_uc002ekg.1_Missense_Mutation_p.P289S|HERPUD1_uc010cco.1_Silent_p.G322G|HERPUD1_uc010ccp.1_Missense_Mutation_p.P216S|HERPUD1_uc002ekh.1_Missense_Mutation_p.P132S	NM_014685	NP_055500	Q15011	HERP1_HUMAN	homocysteine-inducible, endoplasmic reticulum	314	Cytoplasmic (Potential).					endoplasmic reticulum membrane|integral to membrane	protein binding				0						TAGACCGAGGCCGGTTCAGAA	0.483			T	ERG	prostate								5	110					0	0	0.001984	0	0
CETP	1071	broad.mit.edu	37	16	57004978	57004978	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:57004978C>T	uc002eki.2	+	6	618	c.561C>T	c.(559-561)TTC>TTT	p.F187F	CETP_uc002ekj.2_Silent_p.F187F	NM_000078	NP_000069	P11597	CETP_HUMAN	cholesteryl ester transfer protein, plasma	187					cholesterol homeostasis|cholesterol metabolic process|high-density lipoprotein particle remodeling|lipoprotein metabolic process|low-density lipoprotein particle remodeling|phosphatidylcholine metabolic process|phospholipid homeostasis|receptor-mediated endocytosis|regulation of cholesterol efflux|triglyceride homeostasis|triglyceride metabolic process|very-low-density lipoprotein particle remodeling	high-density lipoprotein particle|vesicle	cholesterol binding|cholesterol transporter activity|phosphatidylcholine binding|phospholipid transporter activity|triglyceride binding			central_nervous_system(1)|skin(1)	2						TCACAAATTTCATCTCCTTCA	0.517													14	39					0	0	0.004007	0	0
CETP	1071	broad.mit.edu	37	16	57005954	57005954	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:57005954G>A	uc002eki.2	+	8	766	c.709G>A	c.(709-711)GAT>AAT	p.D237N	CETP_uc002ekj.2_Missense_Mutation_p.D237N	NM_000078	NP_000069	P11597	CETP_HUMAN	cholesteryl ester transfer protein, plasma	237					cholesterol homeostasis|cholesterol metabolic process|high-density lipoprotein particle remodeling|lipoprotein metabolic process|low-density lipoprotein particle remodeling|phosphatidylcholine metabolic process|phospholipid homeostasis|receptor-mediated endocytosis|regulation of cholesterol efflux|triglyceride homeostasis|triglyceride metabolic process|very-low-density lipoprotein particle remodeling	high-density lipoprotein particle|vesicle	cholesterol binding|cholesterol transporter activity|phosphatidylcholine binding|phospholipid transporter activity|triglyceride binding			central_nervous_system(1)|skin(1)	2						CCTGACAGGTGATCCCGTCAT	0.577													13	56					0	0	0.004007	0	0
NLRC5	84166	broad.mit.edu	37	16	57060342	57060342	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:57060342C>T	uc002ekk.1	+	6	1712	c.1487C>T	c.(1486-1488)TCC>TTC	p.S496F	NLRC5_uc010ccq.1_RNA|NLRC5_uc002ekn.2_Missense_Mutation_p.S301F|NLRC5_uc002ekl.2_Missense_Mutation_p.S301F|NLRC5_uc002ekm.2_Missense_Mutation_p.S301F|NLRC5_uc010ccr.1_RNA	NM_032206	NP_115582	Q86WI3	NLRC5_HUMAN	nucleotide-binding oligomerization domains 27	496	NACHT.				defense response to virus|innate immune response|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production|negative regulation of type I interferon-mediated signaling pathway|positive regulation of interferon-gamma-mediated signaling pathway|positive regulation of MHC class I biosynthetic process|positive regulation of transcription from RNA polymerase II promoter|positive regulation of type I interferon-mediated signaling pathway|regulation of kinase activity	cytosol|nucleus	ATP binding|protein binding|RNA polymerase II core promoter sequence-specific DNA binding			ovary(4)|skin(2)|breast(1)	7		all_neural(199;0.225)				CTGCTGACTTCCTTCTGCGTC	0.577													16	36					0	0	0.004007	0	0
RSPRY1	89970	broad.mit.edu	37	16	57254647	57254647	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:57254647T>C	uc002elb.2	+	9	1183	c.905T>C	c.(904-906)TTA>TCA	p.L302S	RSPRY1_uc002elc.2_Missense_Mutation_p.L302S|RSPRY1_uc002eld.2_Missense_Mutation_p.L302S	NM_133368	NP_588609	Q96DX4	RSPRY_HUMAN	ring finger and SPRY domain containing 1	302	B30.2/SPRY.					extracellular region	zinc ion binding			ovary(1)	1						TTTGCAGTTTTAAAAGAAGGT	0.348													7	26					0	0	0.001984	0	0
CCDC135	84229	broad.mit.edu	37	16	57738868	57738868	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:57738868G>A	uc002emi.2	+	6	869	c.780G>A	c.(778-780)CAG>CAA	p.Q260Q	CCDC135_uc002emj.2_Silent_p.Q260Q|CCDC135_uc002emk.2_Silent_p.Q195Q	NM_032269	NP_115645	Q8IY82	CC135_HUMAN	coiled-coil domain containing 135	260	Potential.					cytoplasm				central_nervous_system(1)	1						GGTTTGAGCAGGAGCAAGAGG	0.562													16	30					0	0	0.004007	0	0
CNGB1	1258	broad.mit.edu	37	16	57918121	57918121	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:57918121C>T	uc002emt.2	-	33	3768	c.3703G>A	c.(3703-3705)GAG>AAG	p.E1235K	CNGB1_uc010cdh.2_Missense_Mutation_p.E1229K	NM_001297	NP_001288	Q14028	CNGB1_HUMAN	cyclic nucleotide gated channel beta 1 isoform	1235	Cytoplasmic (Potential).				sensory perception of smell	intracellular cyclic nucleotide activated cation channel complex	cAMP binding|intracellular cAMP activated cation channel activity			breast(3)|pancreas(1)	4						AGGATCTGCTCTCCCGGCTCC	0.692													28	61					0	0	0.005524	0	0
CNGB1	1258	broad.mit.edu	37	16	57994767	57994767	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:57994767G>A	uc002emt.2	-	8	576	c.511C>T	c.(511-513)CCT>TCT	p.P171S	CNGB1_uc010cdh.2_Missense_Mutation_p.P171S|CNGB1_uc002emu.2_Missense_Mutation_p.P171S	NM_001297	NP_001288	Q14028	CNGB1_HUMAN	cyclic nucleotide gated channel beta 1 isoform	171	Pro-rich.				sensory perception of smell	intracellular cyclic nucleotide activated cation channel complex	cAMP binding|intracellular cAMP activated cation channel activity			breast(3)|pancreas(1)	4						GGGGGCTGAGGAAGCACTCTT	0.637													16	35					0	0	0.004990	0	0
ZNF319	57567	broad.mit.edu	37	16	58030886	58030886	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:58030886G>A	uc002emx.1	-	2	1907	c.1284C>T	c.(1282-1284)TTC>TTT	p.F428F		NM_020807	NP_065858	Q9P2F9	ZN319_HUMAN	zinc finger protein 319	428	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CAGGGCACTTGAAGGGCCGCT	0.667													6	21					0	0	0.001984	0	0
ZNF319	57567	broad.mit.edu	37	16	58031774	58031774	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:58031774G>A	uc002emx.1	-	2	1019	c.396C>T	c.(394-396)TTC>TTT	p.F132F		NM_020807	NP_065858	Q9P2F9	ZN319_HUMAN	zinc finger protein 319	132	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CCCCACAGACGAAGGGCTTCT	0.572													17	41					0	0	0.006122	0	0
GINS3	64785	broad.mit.edu	37	16	58438588	58438588	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:58438588C>T	uc002enh.3	+	3	814	c.606C>T	c.(604-606)CTC>CTT	p.L202L	GINS3_uc010cdj.2_Silent_p.L241L|GINS3_uc002enj.3_Silent_p.L124L|GINS3_uc002eni.3_3'UTR	NM_022770	NP_073607	Q9BRX5	PSF3_HUMAN	GINS complex subunit 3 isoform b	202					DNA replication	nucleus					0						CTTCCAACCTCGTTCAGAATT	0.478													11	24					0	0	0.013537	0	0
CDH8	1006	broad.mit.edu	37	16	61851631	61851631	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:61851631C>T	uc002eog.1	-	7	1281	c.1029G>A	c.(1027-1029)CTG>CTA	p.L343L	CDH8_uc002eoh.2_Silent_p.L112L	NM_001796	NP_001787	P55286	CADH8_HUMAN	cadherin 8, type 2 preproprotein	343	Extracellular (Potential).|Cadherin 3.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|skin(2)|breast(1)	9		Ovarian(137;0.0799)|Melanoma(118;0.16)		UCEC - Uterine corpus endometrioid carcinoma (183;0.196)|Epithelial(162;0.0155)|all cancers(182;0.0305)|OV - Ovarian serous cystadenocarcinoma(108;0.0499)|BRCA - Breast invasive adenocarcinoma(181;0.249)		TCTCAAAGTCCAGAGGCTGTT	0.433													11	24					0	0	0.002450	0	0
CDH11	1009	broad.mit.edu	37	16	64981514	64981514	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:64981514C>T	uc002eoi.2	-	13	2817	c.2383G>A	c.(2383-2385)GAT>AAT	p.D795N	CDH11_uc010cdn.2_RNA|CDH11_uc002eoj.2_3'UTR|CDH11_uc010vin.1_Missense_Mutation_p.D669N	NM_001797	NP_001788	P55287	CAD11_HUMAN	cadherin 11, type 2 preproprotein	795	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion|ossification|skeletal system development	integral to membrane|plasma membrane	calcium ion binding|protein binding			lung(10)|ovary(3)|skin(1)	14		Ovarian(137;0.0973)		OV - Ovarian serous cystadenocarcinoma(108;0.205)		TGTTAAGAATCGTCATCAAAA	0.363			T	USP6	aneurysmal bone cysts					TSP Lung(24;0.17)			13	51					0	0	0.001855	0	0
CDH11	1009	broad.mit.edu	37	16	65022165	65022165	+	Silent	SNP	T	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:65022165T>C	uc002eoi.2	-	7	1328	c.894A>G	c.(892-894)GGA>GGG	p.G298G	CDH11_uc010cdn.2_Intron|CDH11_uc002eoj.2_Silent_p.G298G|CDH11_uc010vin.1_Silent_p.G172G	NM_001797	NP_001788	P55287	CAD11_HUMAN	cadherin 11, type 2 preproprotein	298	Cadherin 3.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion|ossification|skeletal system development	integral to membrane|plasma membrane	calcium ion binding|protein binding			lung(10)|ovary(3)|skin(1)	14		Ovarian(137;0.0973)		OV - Ovarian serous cystadenocarcinoma(108;0.205)		AGCCATTTTCTCCAATGTCTG	0.443			T	USP6	aneurysmal bone cysts					TSP Lung(24;0.17)			32	65					0	0	0.008361	0	0
LOC283867	283867	broad.mit.edu	37	16	65345409	65345409	+	RNA	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:65345409C>T	uc010cdo.1	-	5		c.387G>A			LOC283867_uc010cdp.1_Intron|LOC283867_uc002eol.1_RNA					Homo sapiens cDNA clone IMAGE:5276218.												0				OV - Ovarian serous cystadenocarcinoma(108;0.17)		ATGAACACTTCCTGCATGTGC	0.483													34	129					0	0	0.004289	0	0
CDH5	1003	broad.mit.edu	37	16	66423412	66423412	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:66423412C>T	uc002eom.3	+	5	924	c.768C>T	c.(766-768)CCC>CCT	p.P256P	CDH5_uc002eon.1_Silent_p.P256P	NM_001795	NP_001786	P33151	CADH5_HUMAN	cadherin 5, type 2 preproprotein	256	Cadherin 2.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion|regulation of establishment of cell polarity	integral to membrane|membrane fraction	beta-catenin binding|calcium ion binding|ion channel binding|receptor binding			ovary(2)|lung(2)|central_nervous_system(1)|skin(1)	6		Ovarian(137;0.0955)		OV - Ovarian serous cystadenocarcinoma(108;0.107)		ACAACTTCCCCTTCTTCACCC	0.607													12	35					0	0	0.002450	0	0
CDH5	1003	broad.mit.edu	37	16	66436656	66436656	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:66436656G>A	uc002eom.3	+	12	2095	c.1939G>A	c.(1939-1941)GAG>AAG	p.E647K		NM_001795	NP_001786	P33151	CADH5_HUMAN	cadherin 5, type 2 preproprotein	647	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion|regulation of establishment of cell polarity	integral to membrane|membrane fraction	beta-catenin binding|calcium ion binding|ion channel binding|receptor binding			ovary(2)|lung(2)|central_nervous_system(1)|skin(1)	6		Ovarian(137;0.0955)		OV - Ovarian serous cystadenocarcinoma(108;0.107)		CACCTACGACGAGGAGGGCGG	0.557													9	9					0	0	0.006214	0	0
CDH16	1014	broad.mit.edu	37	16	66947106	66947106	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:66947106C>T	uc002eql.2	-	9	1055	c.982G>A	c.(982-984)GAT>AAT	p.D328N	CDH16_uc010cdy.2_Missense_Mutation_p.D328N|CDH16_uc002eqm.2_Missense_Mutation_p.D231N	NM_004062	NP_004053	O75309	CAD16_HUMAN	cadherin 16 precursor	328	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|upper_aerodigestive_tract(1)	3		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0877)|Epithelial(162;0.203)		TCATTCTCATCCATCACCAGC	0.617											OREG0007817	type=TRANSCRIPTION FACTOR BINDING SITE|Gene=CDH16|TFbs=REST|Dataset=NRSF/REST ChIPSeq sites|EvidenceSubtype=Chromatin immunoprecipitation with tag sequencing (ChIP-TS)	26	63					0	0	0.005443	0	0
CES8	283848	broad.mit.edu	37	16	67038103	67038103	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:67038103G>A	uc002eqv.2	+	9	1099	c.1056G>A	c.(1054-1056)CTG>CTA	p.L352L	CES8_uc010vix.1_Silent_p.L352L|CES8_uc002eqw.2_Silent_p.L352L|CES8_uc002eqy.2_Silent_p.L254L|CES8_uc002eqx.2_Silent_p.L158L|CES8_uc010viy.1_Silent_p.L258L|CES8_uc010viz.1_Silent_p.L254L|CES8_uc002eqz.2_5'Flank	NM_173815	NP_776176	Q5XG92	EST4A_HUMAN	carboxylesterase 8 (putative)	352						extracellular region	carboxylesterase activity				0						TCAACAACCTGGAATTCAATT	0.512													23	72					0	0	0.003330	0	0
CENPT	80152	broad.mit.edu	37	16	67863357	67863357	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:67863357G>A	uc002eun.3	-	13	1798	c.1249C>T	c.(1249-1251)CTT>TTT	p.L417F	CENPT_uc002eum.3_Missense_Mutation_p.L362F|CENPT_uc010vkc.1_Missense_Mutation_p.L175F|CENPT_uc010vkd.1_Missense_Mutation_p.L170F	NM_025082	NP_079358	Q96BT3	CENPT_HUMAN	centromere protein T	417					mitotic prometaphase	condensed chromosome kinetochore|cytosol|nucleus	DNA binding				0		Acute lymphoblastic leukemia(13;0.000299)|all_hematologic(13;0.0184)|Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.00429)|Epithelial(162;0.019)|all cancers(182;0.124)		GCTGGCTCAAGAAACTGATGA	0.577													9	15					0	0	0.010729	0	0
DUS2L	54920	broad.mit.edu	37	16	68108047	68108047	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:68108047C>T	uc002evi.2	+	13	1070	c.921C>T	c.(919-921)TCC>TCT	p.S307S	DUS2L_uc002evj.2_Silent_p.S307S|DUS2L_uc010vkk.1_Silent_p.S272S|DUS2L_uc010cez.2_Silent_p.S220S	NM_017803	NP_060273	Q9NX74	DUS2L_HUMAN	dihydrouridine synthase 2-like, SMM1 homolog	307					tRNA processing	endoplasmic reticulum	double-stranded RNA binding|flavin adenine dinucleotide binding|tRNA dihydrouridine synthase activity				0		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0131)|Epithelial(162;0.0564)		CCCAGTCTTCCCGGGAAATTT	0.527													15	23					0	0	0.003163	0	0
PRMT7	54496	broad.mit.edu	37	16	68382290	68382290	+	Missense_Mutation	SNP	A	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:68382290A>C	uc002evy.1	+	14	1645	c.1369A>C	c.(1369-1371)AAA>CAA	p.K457Q	PRMT7_uc002evx.1_Intron|PRMT7_uc010vlg.1_Missense_Mutation_p.K407Q|PRMT7_uc002evz.1_Intron	NM_019023	NP_061896	Q9NVM4	ANM7_HUMAN	protein arginine methyltransferase 7	457					cell differentiation|DNA methylation involved in gamete generation|regulation of gene expression by genetic imprinting|regulation of transcription, DNA-dependent|spliceosomal snRNP assembly|transcription, DNA-dependent	cytosol|nucleus	[myelin basic protein]-arginine N-methyltransferase activity|histone methyltransferase activity (H4-R3 specific)|protein-arginine omega-N monomethyltransferase activity|protein-arginine omega-N symmetric methyltransferase activity|ribonucleoprotein binding				0		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0155)|Epithelial(162;0.0629)		CATCATAGAGAAACGGCCGGA	0.428													5	68					0	0	0.003080	0	0
WWP2	11060	broad.mit.edu	37	16	69922004	69922004	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:69922004C>T	uc002exu.1	+	9	855	c.766C>T	c.(766-768)CCA>TCA	p.P256S	WWP2_uc002ext.2_Missense_Mutation_p.P256S|WWP2_uc002exv.1_Missense_Mutation_p.P256S|WWP2_uc010vlm.1_Missense_Mutation_p.P140S	NM_007014	NP_008945	O00308	WWP2_HUMAN	WW domain containing E3 ubiquitin protein ligase	256					entry of virus into host cell|negative regulation of protein transport|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transporter activity|proteasomal ubiquitin-dependent protein catabolic process|protein K63-linked ubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus|ubiquitin ligase complex	RNA polymerase II transcription factor binding|ubiquitin-protein ligase activity			lung(3)|ovary(1)|breast(1)|skin(1)	6						TGTGACGTCCCCACCTGCTGC	0.532													36	62					0	0	0.007835	0	0
PDXDC2	283970	broad.mit.edu	37	16	70016326	70016326	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:70016326G>A	uc010vlq.1	-	4	554	c.376C>T	c.(376-378)CGT>TGT	p.R126C	CLEC18C_uc002exy.2_Intron|PDXDC2_uc002eyb.2_RNA|PDXDC2_uc002eyc.2_RNA					SubName: Full=Putative uncharacterized protein;												0						TTCATCTTACGGATTTTAGCT	0.383													9	33					0	0	0.004482	0	0
AARS	16	broad.mit.edu	37	16	70311043	70311043	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:70311043G>A	uc002eyn.1	-	3	269	c.159C>T	c.(157-159)TTC>TTT	p.F53F		NM_001605	NP_001596	P49588	SYAC_HUMAN	alanyl-tRNA synthetase	53					alanyl-tRNA aminoacylation|tRNA processing	cytosol|soluble fraction	alanine-tRNA ligase activity|ATP binding|metal ion binding|tRNA binding			pancreas(1)	1		Ovarian(137;0.0365)		BRCA - Breast invasive adenocarcinoma(221;0.161)	L-Alanine(DB00160)	TTGTGTTCAGGAAAATGGGTT	0.388													17	39					0	0	0.006122	0	0
HYDIN	54768	broad.mit.edu	37	16	70843784	70843784	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:70843784C>T	uc002ezr.2	-	85	14910	c.14782G>A	c.(14782-14784)GAA>AAA	p.E4928K	HYDIN_uc010cfy.2_RNA	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	4929										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				ACAGGCTTTTCCGGAAGTGCT	0.478													115	219					0	0	0.014410	0	0
HYDIN	54768	broad.mit.edu	37	16	70897082	70897082	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:70897082G>A	uc002ezr.2	-	68	11600	c.11472C>T	c.(11470-11472)TTC>TTT	p.F3824F	HYDIN_uc010cfy.2_RNA	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	3825										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				TAATCACATCGAACCTGCAAA	0.448													6	24					0	0	0.001168	0	0
HYDIN	54768	broad.mit.edu	37	16	70908764	70908764	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:70908764G>A	uc002ezr.2	-	63	10741	c.10613C>T	c.(10612-10614)ACC>ATC	p.T3538I		NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	3539										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				GATATACGCGGTGGTGGGCCT	0.502													7	11					0	0	0.003080	0	0
HYDIN	54768	broad.mit.edu	37	16	70926315	70926315	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:70926315G>A	uc002ezr.2	-	56	9491	c.9363C>T	c.(9361-9363)TTC>TTT	p.F3121F		NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	3122										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				TTTTTGCATGGAAGAAAACTT	0.463													11	69					0	0	0.001855	0	0
HYDIN	54768	broad.mit.edu	37	16	70935048	70935048	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:70935048C>T	uc002ezr.2	-	53	9032	c.8904G>A	c.(8902-8904)CGG>CGA	p.R2968R		NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	2969										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				GGCTGGTGATCCGCCAGGCCA	0.527													7	36					0	0	0.002450	0	0
HYDIN	54768	broad.mit.edu	37	16	70977742	70977742	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:70977742G>A	uc002ezr.2	-	42	6767	c.6639C>T	c.(6637-6639)CTC>CTT	p.L2213L		NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	2214										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				GGATCTGCACGAGAAGTTCAT	0.642													6	22					0	0	0.001168	0	0
HYDIN	54768	broad.mit.edu	37	16	71012908	71012908	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:71012908C>T	uc002ezr.2	-	30	4672	c.4544G>A	c.(4543-4545)AGG>AAG	p.R1515K		NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	1516										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				TGTGTTTTTCCTGGCTTGATT	0.428													7	22					0	0	0.004482	0	0
HYDIN	54768	broad.mit.edu	37	16	71054220	71054220	+	Missense_Mutation	SNP	T	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:71054220T>G	uc002ezr.2	-	22	3315	c.3187A>C	c.(3187-3189)AAA>CAA	p.K1063Q		NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	1063										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				CTGTTAGGTTTCTGCAAAAAC	0.388													9	16					0	0	0.008291	0	0
HYDIN	54768	broad.mit.edu	37	16	71127722	71127722	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:71127722C>T	uc002ezr.2	-	11	1572	c.1444G>A	c.(1444-1446)GAG>AAG	p.E482K	HYDIN_uc010cfz.1_Missense_Mutation_p.E227K|HYDIN_uc002ezv.2_Missense_Mutation_p.E482K|HYDIN_uc010vmc.1_Missense_Mutation_p.E499K|HYDIN_uc010vmd.1_Missense_Mutation_p.E509K|HYDIN_uc002ezw.3_Missense_Mutation_p.E499K	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	482										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				GTGCTTACCTCATAACAATGT	0.388													6	22					0	0	0.001984	0	0
HYDIN	54768	broad.mit.edu	37	16	71163701	71163701	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:71163701C>T	uc002ezr.2	-	9	1197	c.1069G>A	c.(1069-1071)GAG>AAG	p.E357K	HYDIN_uc010cfz.1_Missense_Mutation_p.E102K|HYDIN_uc002ezv.2_Missense_Mutation_p.E357K|HYDIN_uc010vmc.1_Missense_Mutation_p.E374K|HYDIN_uc010vmd.1_Missense_Mutation_p.E384K|HYDIN_uc002ezw.3_Missense_Mutation_p.E374K	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	357										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				TCATCCTTCTCCTCTTTGATC	0.438													4	9					0	0	0.006214	0	0
CALB2	794	broad.mit.edu	37	16	71423714	71423714	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:71423714G>A	uc002faa.3	+	11	832	c.762G>A	c.(760-762)GGG>GGA	p.G254G	CALB2_uc010vme.1_RNA|CALB2_uc002fac.3_3'UTR	NM_001740	NP_001731	P22676	CALB2_HUMAN	calbindin 2 isoform 1	254	6; possibly ancestral (Probable).|EF-hand 6.						calcium ion binding				0		Ovarian(137;0.125)				CAGAGGCAGGGAAGCTCTACC	0.552													20	105					0	0	0.010504	0	0
ZNF23	7571	broad.mit.edu	37	16	71482251	71482251	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:71482251G>A	uc002faf.2	-	6	2491	c.1677C>T	c.(1675-1677)CCC>CCT	p.P559P	ZNF23_uc002fad.2_Silent_p.P501P|ZNF23_uc002fae.2_Silent_p.P501P|ZNF23_uc010vmf.1_Silent_p.P501P|ZNF23_uc002fag.2_Silent_p.P501P|ZNF23_uc002fah.2_Silent_p.P559P|ZNF23_uc002fai.2_Silent_p.P598P	NM_145911	NP_666016	P17027	ZNF23_HUMAN	zinc finger protein 23	559					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Ovarian(137;0.00768)		BRCA - Breast invasive adenocarcinoma(221;0.0686)		TACACTGAAAGGGTTTCTCTC	0.428													14	21					0	0	0.004990	0	0
CHST4	10164	broad.mit.edu	37	16	71570729	71570729	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:71570729C>T	uc002fan.2	+	2	330	c.149C>T	c.(148-150)TCC>TTC	p.S50F	CHST4_uc002fao.2_Missense_Mutation_p.S50F	NM_005769	NP_005760	Q8NCG5	CHST4_HUMAN	carbohydrate (N-acetylglucosamine 6-O)	50	Lumenal (Potential).				cell-cell signaling|immune response|inflammatory response|N-acetylglucosamine metabolic process|protein sulfation	integral to membrane|intrinsic to Golgi membrane|trans-Golgi network	N-acetylglucosamine 6-O-sulfotransferase activity				0						GTTCTGTCTTCCTGGCGCTCT	0.552													27	38					0	0	0.005443	0	0
CHST4	10164	broad.mit.edu	37	16	71570864	71570864	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:71570864G>A	uc002fan.2	+	2	465	c.284G>A	c.(283-285)CGG>CAG	p.R95Q	CHST4_uc002fao.2_Missense_Mutation_p.R95Q	NM_005769	NP_005760	Q8NCG5	CHST4_HUMAN	carbohydrate (N-acetylglucosamine 6-O)	95	Lumenal (Potential).				cell-cell signaling|immune response|inflammatory response|N-acetylglucosamine metabolic process|protein sulfation	integral to membrane|intrinsic to Golgi membrane|trans-Golgi network	N-acetylglucosamine 6-O-sulfotransferase activity				0						ATGGCTGTGCGGGATCTGATA	0.577													9	35					0	0	0.004482	0	0
TAT	6898	broad.mit.edu	37	16	71606461	71606461	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:71606461C>T	uc002fap.2	-	5	638	c.539G>A	c.(538-540)GGA>GAA	p.G180E		NM_000353	NP_000344	P17735	ATTY_HUMAN	tyrosine aminotransferase	180					2-oxoglutarate metabolic process|glutamate metabolic process|L-phenylalanine catabolic process|tyrosine catabolic process	cytosol	1-aminocyclopropane-1-carboxylate synthase activity|L-tyrosine:2-oxoglutarate aminotransferase activity|pyridoxal phosphate binding			ovary(2)	2		Ovarian(137;0.125)		Kidney(780;0.0157)	L-Glutamic Acid(DB00142)|L-Phenylalanine(DB00120)|L-Tyrosine(DB00135)|Pyridoxal Phosphate(DB00114)	GACCTCAATTCCCATAGACTC	0.388													14	32					0	0	0.002450	0	0
MARVELD3	91862	broad.mit.edu	37	16	71674741	71674741	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:71674741G>A	uc002fau.2	+	3	1107	c.1044G>A	c.(1042-1044)TGG>TGA	p.W348*	PHLPP2_uc002fav.2_RNA|MARVELD3_uc010cge.2_3'UTR	NM_001017967	NP_001017967	Q96A59	MALD3_HUMAN	MARVEL domain containing 3 isoform 1	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment						integral to membrane				skin(1)	1		Ovarian(137;0.125)				GTCTCACCTGGATGGACTGCC	0.587													14	34					0	0	0.004990	0	0
PHLPP2	23035	broad.mit.edu	37	16	71712746	71712746	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:71712746C>T	uc002fax.2	-	7	1186	c.1180G>A	c.(1180-1182)GAT>AAT	p.D394N	PHLPP2_uc002fav.2_RNA|PHLPP2_uc010cgf.2_Missense_Mutation_p.D394N|PHLPP2_uc002fay.1_Missense_Mutation_p.D394N	NM_015020	NP_055835	Q6ZVD8	PHLP2_HUMAN	PH domain and leucine rich repeat protein	394	LRR 7.					cytoplasm|membrane|nucleus	metal ion binding|phosphoprotein phosphatase activity			ovary(1)|central_nervous_system(1)	2						ACCACTCTATCTAACATAGTG	0.398													7	48					0	0	0.001984	0	0
AP1G1	164	broad.mit.edu	37	16	71807241	71807241	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:71807241G>A	uc010cgg.2	-	4	665	c.351C>T	c.(349-351)TTC>TTT	p.F117F	AP1G1_uc002fba.2_Silent_p.F117F|AP1G1_uc002fbb.2_Silent_p.F140F|AP1G1_uc010vmg.1_RNA|AP1G1_uc010vmh.1_Silent_p.F199F	NM_001128	NP_001119	O43747	AP1G1_HUMAN	adaptor-related protein complex 1, gamma 1	117					endocytosis|intracellular protein transport|post-Golgi vesicle-mediated transport|regulation of defense response to virus by virus|viral reproduction	clathrin adaptor complex|clathrin coated vesicle membrane|cytosol|Golgi membrane|lysosomal membrane|recycling endosome	kinesin binding|protein transporter activity			ovary(2)	2		Ovarian(137;0.125)				ACCCCTGTACGAATTGCGTGC	0.478													7	52					0	0	0.003080	0	0
CLEC18B	497190	broad.mit.edu	37	16	74455130	74455130	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:74455130G>A	uc002fct.2	-	1	239	c.39C>T	c.(37-39)CTC>CTT	p.L13L	CLEC18B_uc002fcu.2_Silent_p.L13L|CLEC18B_uc010vmu.1_Silent_p.L13L|CLEC18B_uc010vmw.1_Silent_p.L13L	NM_001011880	NP_001011880	Q6UXF7	CL18B_HUMAN	C-type lectin domain family 18, member B	13						extracellular region	sugar binding				0						GCACAGCCAGGAGATGCCCCC	0.682													5	56					0	0	0.003080	0	0
MLKL	197259	broad.mit.edu	37	16	74709572	74709572	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:74709572G>A	uc002fdb.2	-	8	1570	c.1129C>T	c.(1129-1131)CTC>TTC	p.L377F	MLKL_uc002fdc.2_Intron	NM_152649	NP_689862	Q8NB16	MLKL_HUMAN	mixed lineage kinase domain-like isoform 1	377	Protein kinase.						ATP binding|protein binding|protein kinase activity			stomach(2)	2						TGAGGTGAGAGATATGCTGTA	0.393													23	56					0	0	0.003954	0	0
KARS	3735	broad.mit.edu	37	16	75669881	75669881	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:75669881G>A	uc002feq.2	-	5	646	c.598C>T	c.(598-600)CCG>TCG	p.P200S	KARS_uc002fer.2_Missense_Mutation_p.P228S|KARS_uc002fes.2_Missense_Mutation_p.P44S|KARS_uc010cgz.2_Missense_Mutation_p.P44S	NM_005548	NP_005539	Q15046	SYK_HUMAN	lysyl-tRNA synthetase isoform 2	200					interspecies interaction between organisms|lysyl-tRNA aminoacylation|tRNA processing	cytosol|extracellular region|mitochondrial matrix|nucleus|plasma membrane|soluble fraction	ATP binding|lysine-tRNA ligase activity|metal ion binding|tRNA binding			ovary(2)	2					L-Lysine(DB00123)	ATCTCATACGGAATGATGCTC	0.448													15	22					0	0	0.002450	0	0
CNTNAP4	85445	broad.mit.edu	37	16	76389361	76389361	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:76389361G>A	uc002feu.1	+	5	728	c.343G>A	c.(343-345)GAT>AAT	p.D115N	CNTNAP4_uc002fev.1_Missense_Mutation_p.D27N|CNTNAP4_uc010chb.1_Missense_Mutation_p.D90N|CNTNAP4_uc002fex.1_Missense_Mutation_p.D118N|CNTNAP4_uc002few.2_Missense_Mutation_p.D90N	NM_033401	NP_207837	Q9C0A0	CNTP4_HUMAN	cell recognition protein CASPR4 isoform 1	115	Extracellular (Potential).|F5/8 type C.				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(1)|pancreas(1)	2						GATGTTCAGTGATAGTGGCTG	0.483													17	68					0	0	0.008871	0	0
CNTNAP4	85445	broad.mit.edu	37	16	76482679	76482679	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:76482679C>T	uc002feu.1	+	8	1143	c.758C>T	c.(757-759)CCT>CTT	p.P253L	CNTNAP4_uc002fev.1_Missense_Mutation_p.P165L|CNTNAP4_uc010chb.1_Missense_Mutation_p.P228L|CNTNAP4_uc002fex.1_Missense_Mutation_p.P256L|CNTNAP4_uc002few.2_Missense_Mutation_p.P228L	NM_033401	NP_207837	Q9C0A0	CNTP4_HUMAN	cell recognition protein CASPR4 isoform 1	253	Extracellular (Potential).|Laminin G-like 1.				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(1)|pancreas(1)	2						GCTAAACTGCCTTCCACTTCC	0.453													3	9					0	0	0.009096	0	0
CDYL2	124359	broad.mit.edu	37	16	80718592	80718592	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:80718592C>T	uc002ffs.2	-	2	564	c.459G>A	c.(457-459)CAG>CAA	p.Q153Q		NM_152342	NP_689555	Q8N8U2	CDYL2_HUMAN	chromodomain protein, Y-like 2	153						nucleus	catalytic activity|protein binding			central_nervous_system(1)	1						CCATCCCGTTCTGAGACTTTT	0.522													11	57					0	0	0.013537	0	0
ATMIN	23300	broad.mit.edu	37	16	81075941	81075941	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:81075941C>T	uc002ffz.1	+	3	536	c.518C>T	c.(517-519)TCG>TTG	p.S173L	ATMIN_uc002fga.2_Missense_Mutation_p.S15L|ATMIN_uc010vnn.1_Intron|ATMIN_uc002fgb.1_Missense_Mutation_p.S15L	NM_015251	NP_056066	O43313	ATMIN_HUMAN	ATM interactor	173	C2H2-type 2; degenerate.				response to DNA damage stimulus	nucleus	zinc ion binding				0						TGCAGCAATTCGTACGGTACA	0.493													39	44					0	0	0.005524	0	0
PLCG2	5336	broad.mit.edu	37	16	81819622	81819622	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:81819622C>T	uc002fgt.2	+	2	180	c.28C>T	c.(28-30)CTT>TTT	p.L10F	PLCG2_uc010chg.1_Missense_Mutation_p.L10F	NM_002661	NP_002652	P16885	PLCG2_HUMAN	phospholipase C, gamma 2	10					intracellular signal transduction|phospholipid catabolic process|platelet activation	plasma membrane	phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			large_intestine(4)|lung(2)|ovary(1)|skin(1)	8						TGTAGATTCCCTTGCGGAATA	0.542													19	64					0	0	0.012319	0	0
PLCG2	5336	broad.mit.edu	37	16	81888096	81888096	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:81888096G>A	uc002fgt.2	+	3	393	c.241G>A	c.(241-243)GAT>AAT	p.D81N	PLCG2_uc010chg.1_Missense_Mutation_p.D81N	NM_002661	NP_002652	P16885	PLCG2_HUMAN	phospholipase C, gamma 2	81	PH.				intracellular signal transduction|phospholipid catabolic process|platelet activation	plasma membrane	phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			large_intestine(4)|lung(2)|ovary(1)|skin(1)	8						GAACTCCAAAGATTTCGAGCG	0.468													24	62					0	0	0.003954	0	0
PLCG2	5336	broad.mit.edu	37	16	81914535	81914536	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:81914535_81914536GG>AT	uc002fgt.2	+	8	821_822	c.669_670GG>AT	c.(667-672)AAGGAT>AAATAT	p.D224Y	PLCG2_uc010chg.1_Missense_Mutation_p.D224Y	NM_002661	NP_002652	P16885	PLCG2_HUMAN	phospholipase C, gamma 2	224					intracellular signal transduction|phospholipid catabolic process|platelet activation	plasma membrane	phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			large_intestine(4)|lung(2)|ovary(1)|skin(1)	8						AATTCAAAAAGGATTCGTCCGT	0.495													8	86					0	0	0.004672	0	0
SDR42E1	93517	broad.mit.edu	37	16	82032727	82032727	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:82032727G>A	uc002fgu.2	-	3	1299	c.1171C>T	c.(1171-1173)CTG>TTG	p.L391L		NM_145168	NP_660151	Q8WUS8	D42E1_HUMAN	short chain dehydrogenase/reductase family 42E,	391	Helical; (Potential).				steroid biosynthetic process	integral to membrane	3-beta-hydroxy-delta5-steroid dehydrogenase activity|binding				0						CACAGTGACAGAATCACAGAA	0.453													8	25					0	0	0.008291	0	0
SDR42E1	93517	broad.mit.edu	37	16	82033103	82033103	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:82033103G>A	uc002fgu.2	-	3	923	c.795C>T	c.(793-795)TTC>TTT	p.F265F		NM_145168	NP_660151	Q8WUS8	D42E1_HUMAN	short chain dehydrogenase/reductase family 42E,	265					steroid biosynthetic process	integral to membrane	3-beta-hydroxy-delta5-steroid dehydrogenase activity|binding				0						GAGGCCGGAAGAACTCAAAGT	0.537													22	50					0	0	0.012319	0	0
SDR42E1	93517	broad.mit.edu	37	16	82033237	82033237	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:82033237C>T	uc002fgu.2	-	3	789	c.661G>A	c.(661-663)GAG>AAG	p.E221K		NM_145168	NP_660151	Q8WUS8	D42E1_HUMAN	short chain dehydrogenase/reductase family 42E,	221					steroid biosynthetic process	integral to membrane	3-beta-hydroxy-delta5-steroid dehydrogenase activity|binding				0						TGGACAAACTCAACCAGGCTC	0.537													42	58					0	0	0.008740	0	0
SDR42E1	93517	broad.mit.edu	37	16	82034450	82034450	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:82034450C>T	uc002fgu.2	-	2	142	c.14G>A	c.(13-15)AGA>AAA	p.R5K		NM_145168	NP_660151	Q8WUS8	D42E1_HUMAN	short chain dehydrogenase/reductase family 42E,	5					steroid biosynthetic process	integral to membrane	3-beta-hydroxy-delta5-steroid dehydrogenase activity|binding				0						CTTTTGAGATCTTTTGGGGTC	0.373													6	28					0	0	0.003080	0	0
CDH13	1012	broad.mit.edu	37	16	83251002	83251002	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:83251002G>A	uc002fgx.2	+	5	656	c.536G>A	c.(535-537)GGA>GAA	p.G179E	CDH13_uc010vns.1_Missense_Mutation_p.G226E|CDH13_uc010vnt.1_5'UTR|CDH13_uc010vnu.1_Missense_Mutation_p.G140E	NM_001257	NP_001248	P55290	CAD13_HUMAN	cadherin 13 preproprotein	179	Cadherin 1.				adherens junction organization|calcium-dependent cell-cell adhesion|cell junction assembly|endothelial cell migration|homophilic cell adhesion|keratinocyte proliferation|lamellipodium assembly|localization within membrane|low-density lipoprotein particle mediated signaling|negative regulation of cell adhesion|negative regulation of cell proliferation|positive regulation of calcium-mediated signaling|positive regulation of cell migration|positive regulation of cell-matrix adhesion|positive regulation of endothelial cell proliferation|positive regulation of positive chemotaxis|positive regulation of smooth muscle cell proliferation|positive regulation of survival gene product expression|Rac protein signal transduction|regulation of endocytosis|regulation of epidermal growth factor receptor signaling pathway|Rho protein signal transduction|sprouting angiogenesis	anchored to membrane|caveola|extracellular space|integral to membrane|neuron projection	adiponectin binding|cadherin binding|calcium ion binding|low-density lipoprotein particle binding			large_intestine(1)	1		all_cancers(2;1.34e-11)|all_epithelial(2;4.3e-09)		COAD - Colon adenocarcinoma(5;0.0268)		ACTGGAAAGGGAGTGGATCAA	0.458													13	32					0	0	0.003163	0	0
CDH13	1012	broad.mit.edu	37	16	83704515	83704515	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:83704515G>A	uc002fgx.2	+	9	1342	c.1222G>A	c.(1222-1224)GGG>AGG	p.G408R	CDH13_uc010vns.1_Missense_Mutation_p.G455R|CDH13_uc010vnt.1_Missense_Mutation_p.G154R|CDH13_uc010vnu.1_Missense_Mutation_p.G369R	NM_001257	NP_001248	P55290	CAD13_HUMAN	cadherin 13 preproprotein	408	Cadherin 3.				adherens junction organization|calcium-dependent cell-cell adhesion|cell junction assembly|endothelial cell migration|homophilic cell adhesion|keratinocyte proliferation|lamellipodium assembly|localization within membrane|low-density lipoprotein particle mediated signaling|negative regulation of cell adhesion|negative regulation of cell proliferation|positive regulation of calcium-mediated signaling|positive regulation of cell migration|positive regulation of cell-matrix adhesion|positive regulation of endothelial cell proliferation|positive regulation of positive chemotaxis|positive regulation of smooth muscle cell proliferation|positive regulation of survival gene product expression|Rac protein signal transduction|regulation of endocytosis|regulation of epidermal growth factor receptor signaling pathway|Rho protein signal transduction|sprouting angiogenesis	anchored to membrane|caveola|extracellular space|integral to membrane|neuron projection	adiponectin binding|cadherin binding|calcium ion binding|low-density lipoprotein particle binding			large_intestine(1)	1		all_cancers(2;1.34e-11)|all_epithelial(2;4.3e-09)		COAD - Colon adenocarcinoma(5;0.0268)		CGGAAACCCCGGGCAGAGCTT	0.498													28	95					0	0	0.010818	0	0
LRRC50	123872	broad.mit.edu	37	16	84203719	84203719	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:84203719G>A	uc002fhl.3	+	8	1466	c.1285G>A	c.(1285-1287)GTT>ATT	p.V429I	LRRC50_uc010vnw.1_Missense_Mutation_p.V193I	NM_178452	NP_848547	Q8NEP3	DAAF1_HUMAN	leucine rich repeat containing 50	429	Pro-rich.				axonemal dynein complex assembly|cilium morphogenesis	cilium axoneme|cytoplasm|spindle pole	dynein binding				0						ACCTGTGGAGGTTAAAGGAGA	0.617									Kartagener_syndrome				12	57					0	0	0.013537	0	0
TAF1C	9013	broad.mit.edu	37	16	84218584	84218584	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:84218584G>A	uc002fhn.2	-	2	239	c.11C>T	c.(10-12)CCC>CTC	p.P4L	TAF1C_uc002fhm.2_Intron|TAF1C_uc010vnx.1_Missense_Mutation_p.P4L|TAF1C_uc010vny.1_Intron|TAF1C_uc010vnz.1_Intron|TAF1C_uc002fho.2_Intron|TAF1C_uc010voa.1_Intron|TAF1C_uc002fhp.1_RNA|TAF1C_uc010vob.1_Missense_Mutation_p.P4L	NM_005679	NP_005670	Q15572	TAF1C_HUMAN	TBP-associated factor 1C isoform 1	4					regulation of transcription, DNA-dependent|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase I promoter	nucleoplasm	DNA binding			ovary(1)	1						GAGGGAGCTGGGGAAGTCCAT	0.597													6	19					0	0	0.001984	0	0
ADAD2	161931	broad.mit.edu	37	16	84230520	84230520	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:84230520G>A	uc002fhr.2	+	10	1806	c.1692G>A	c.(1690-1692)CTG>CTA	p.L564L	ADAD2_uc002fhq.2_Silent_p.L646L|uc002fhs.1_5'UTR	NM_001145400	NP_001138872	Q8NCV1	ADAD2_HUMAN	adenosine deaminase domain containing 2 isoform	564	A to I editase.				RNA processing	intracellular	adenosine deaminase activity|double-stranded RNA binding				0						CTCTCCTCCTGGACCAGCAGG	0.667													5	12					0	0	0.001168	0	0
KCNG4	93107	broad.mit.edu	37	16	84255835	84255835	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:84255835G>A	uc010voc.1	-	3	1669	c.1548C>T	c.(1546-1548)ATC>ATT	p.I516I		NM_172347	NP_758857	Q8TDN1	KCNG4_HUMAN	potassium voltage-gated channel, subfamily G,	516	Cytoplasmic (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			breast(3)	3						ACATGTGCATGATAGGCAAGG	0.542													37	108					0	0	0.009718	0	0
KCNG4	93107	broad.mit.edu	37	16	84270666	84270666	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:84270666G>A	uc010voc.1	-	2	547	c.426C>T	c.(424-426)TCC>TCT	p.S142S	KCNG4_uc002fhu.1_Silent_p.S142S	NM_172347	NP_758857	Q8TDN1	KCNG4_HUMAN	potassium voltage-gated channel, subfamily G,	142						voltage-gated potassium channel complex	voltage-gated potassium channel activity			breast(3)	3						CCTCCTGGAAGGACAGCGCGC	0.652													4	23					0	0	0.009096	0	0
ATP2C2	9914	broad.mit.edu	37	16	84456112	84456112	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:84456112C>T	uc002fhx.2	+	8	830	c.741C>T	c.(739-741)TTC>TTT	p.F247F	ATP2C2_uc010chj.2_Silent_p.F247F|ATP2C2_uc002fhy.2_Silent_p.F264F|ATP2C2_uc002fhz.2_Silent_p.F96F	NM_014861	NP_055676	O75185	AT2C2_HUMAN	ATPase, Ca++ transporting, type 2C, member 2	247	Helical; Name=3; (Potential).				ATP biosynthetic process	Golgi membrane|integral to membrane	ATP binding|calcium-transporting ATPase activity|metal ion binding|protein binding			breast(1)|central_nervous_system(1)	2						ACATCGTCTTCATGGGGACCC	0.592													22	33					0	0	0.014323	0	0
FAM92B	339145	broad.mit.edu	37	16	85143948	85143948	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:85143948C>T	uc010vok.1	-	2	295	c.139G>A	c.(139-141)GAC>AAC	p.D47N		NM_198491	NP_940893	Q6ZTR7	FA92B_HUMAN	hypothetical protein LOC339145	47										central_nervous_system(1)	1						ACCAGCTGGTCCGCCTTGTCC	0.632													21	26					0	0	0.012319	0	0
GINS2	51659	broad.mit.edu	37	16	85721180	85721180	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:85721180C>T	uc002fja.2	-	2	175	c.91G>A	c.(91-93)GGG>AGG	p.G31R	GINS2_uc002fjb.2_Missense_Mutation_p.G31R	NM_016095	NP_057179	Q9Y248	PSF2_HUMAN	DNA replication complex GINS protein PSF2	31					DNA strand elongation involved in DNA replication|S phase of mitotic cell cycle	nucleoplasm	protein binding				0						CCCAGGTCCCCCTGCCAAAAG	0.478													10	36					0	0	0.006214	0	0
CBFA2T3	863	broad.mit.edu	37	16	88951529	88951529	+	Missense_Mutation	SNP	C	A	A	rs140507946	byFrequency	TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:88951529C>A	uc002fmm.1	-	7	1228	c.1042G>T	c.(1042-1044)GCC>TCC	p.A348S	CBFA2T3_uc002fml.1_Missense_Mutation_p.A262S|CBFA2T3_uc010cif.1_Missense_Mutation_p.A287S|CBFA2T3_uc002fmn.1_Missense_Mutation_p.A323S	NM_005187	NP_005178	O75081	MTG16_HUMAN	myeloid translocation gene on chromosome 16	348	Mediates localization to the nucleus (By similarity).|Mediates interaction with PDE7A (in isoform 2).				cell proliferation|granulocyte differentiation	Golgi membrane|nucleolus|nucleoplasm	protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(3)|ovary(1)	4				BRCA - Breast invasive adenocarcinoma(80;0.0275)		TGGGCCATGGCTATGTCCTCC	0.706			T	RUNX1	AML								12	31					1.49906e-05	1.60404e-05	0.002450	1	0
CPNE7	27132	broad.mit.edu	37	16	89655186	89655186	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:89655186C>T	uc002fnp.2	+	12	1386	c.1256C>T	c.(1255-1257)TCC>TTC	p.S419F	CPNE7_uc002fnq.2_Missense_Mutation_p.S344F	NM_014427	NP_055242	Q9UBL6	CPNE7_HUMAN	copine 7 isoform b	419	VWFA.				lipid metabolic process		transporter activity				0		all_hematologic(23;0.0748)		all cancers(4;3.63e-08)|OV - Ovarian serous cystadenocarcinoma(4;1.7e-06)|BRCA - Breast invasive adenocarcinoma(80;0.0147)		GCACTGGTGTCCGTGGGCGAG	0.622													5	21					0	0	0.001168	0	0
FANCA	2175	broad.mit.edu	37	16	89858885	89858885	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr16:89858885G>A	uc002fou.1	-	12	1119	c.1077C>T	c.(1075-1077)TAC>TAT	p.Y359Y	FANCA_uc010vpn.1_Silent_p.Y359Y	NM_000135	NP_000126	O15360	FANCA_HUMAN	Fanconi anemia, complementation group A isoform	359					DNA repair|protein complex assembly	cytoplasm|nucleoplasm	protein binding			ovary(2)|breast(2)|central_nervous_system(1)|skin(1)	6		Lung NSC(15;8.48e-06)|all_lung(18;1.31e-05)|all_hematologic(23;0.0194)		BRCA - Breast invasive adenocarcinoma(80;0.028)		TCACCCTGCGGTACAGTGAGG	0.547			D|Mis|N|F|S			AML|leukemia		Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				11	41					0	0	0.008291	0	0
PRPF8	10594	broad.mit.edu	37	17	1579318	1579318	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:1579318C>T	uc002fte.2	-	18	2697	c.2583G>A	c.(2581-2583)AGG>AGA	p.R861R		NM_006445	NP_006436	Q6P2Q9	PRP8_HUMAN	U5 snRNP-specific protein	861						catalytic step 2 spliceosome|nuclear speck|U5 snRNP	protein binding|RNA binding			lung(4)|ovary(2)	6				UCEC - Uterine corpus endometrioid carcinoma (25;0.0855)		CTAGCTCCTCCCTCTGAGACT	0.537													7	15					0	0	0.001984	0	0
OR1A1	8383	broad.mit.edu	37	17	3119431	3119431	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:3119431G>A	uc010vrc.1	+	1	517	c.517G>A	c.(517-519)GAA>AAA	p.E173K		NM_014565	NP_055380	Q9P1Q5	OR1A1_HUMAN	olfactory receptor, family 1, subfamily A,	173	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						TGGCAACCAGGAAGTGGCCAA	0.488													26	28					0	0	0.003954	0	0
OR3A4	390756	broad.mit.edu	37	17	3214098	3214098	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:3214098C>T	uc002fvi.2	+	1	560	c.494C>T	c.(493-495)GCC>GTC	p.A165V		NR_024128				RecName: Full=Olfactory receptor 3A4; AltName: Full=Olfactory receptor 17-24;          Short=OR17-24;											ovary(1)	1						CAAACTGTTGCCCTGTCTCCT	0.532													65	77					0	0	0.014410	0	0
OR3A4	390756	broad.mit.edu	37	17	3214243	3214243	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:3214243C>T	uc002fvi.2	+	1	705	c.639C>T	c.(637-639)CCC>CCT	p.P213P		NR_024128				RecName: Full=Olfactory receptor 3A4; AltName: Full=Olfactory receptor 17-24;          Short=OR17-24;											ovary(1)	1						GTGTGGCCCCCTTGGTCCTCA	0.562													32	32					0	0	0.010818	0	0
OR1E1	8387	broad.mit.edu	37	17	3300826	3300826	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:3300826C>T	uc002fvj.1	-	1	879	c.879G>A	c.(877-879)AGG>AGA	p.R293R		NM_003553	NP_003544	P30953	OR1E1_HUMAN	olfactory receptor, family 1, subfamily E,	293	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TGTCTCTGTTCCTCAGGCTGT	0.438													17	15					0	0	0.007413	0	0
TRPV1	7442	broad.mit.edu	37	17	3494609	3494609	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:3494609T>C	uc010vrr.1	-	2	850	c.323A>G	c.(322-324)AAG>AGG	p.K108R	TRPV1_uc010vro.1_Missense_Mutation_p.K108R|TRPV1_uc010vrp.1_Missense_Mutation_p.K108R|TRPV1_uc010vrq.1_Missense_Mutation_p.R83G|TRPV1_uc010vrs.1_Missense_Mutation_p.K108R|TRPV1_uc010vrt.1_Missense_Mutation_p.K108R|TRPV1_uc010vru.1_Missense_Mutation_p.K108R	NM_080706	NP_542437	Q8NER1	TRPV1_HUMAN	transient receptor potential cation channel,	108	Cytoplasmic (Potential).				cell surface receptor linked signaling pathway|chemosensory behavior|thermoception	cell junction|dendritic spine membrane|integral to plasma membrane|postsynaptic membrane	ATP binding|calcium channel activity|calmodulin binding			ovary(1)	1				Lung(1;0.055)|COAD - Colon adenocarcinoma(5;0.0896)|LUAD - Lung adenocarcinoma(1115;0.131)	Alpha-Linolenic Acid(DB00132)|Aspartame(DB00168)|Icosapent(DB00159)	CCTGAGGGTCTTCTCGGTGCT	0.597													13	30					0	0	0.003163	0	0
ZZEF1	23140	broad.mit.edu	37	17	3974195	3974195	+	Silent	SNP	G	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:3974195G>T	uc002fxe.2	-	26	3922	c.3858C>A	c.(3856-3858)CCC>CCA	p.P1286P	ZZEF1_uc002fxj.1_Translation_Start_Site	NM_015113	NP_055928	O43149	ZZEF1_HUMAN	zinc finger, ZZ type with EF hand domain 1	1286							calcium ion binding|zinc ion binding			ovary(2)|central_nervous_system(1)|pancreas(1)	4						AATGGCGGCAGGGGTCGTCAG	0.383													7	27					0.00198382	0.00211605	0.001984	1	0
ZZEF1	23140	broad.mit.edu	37	17	3977637	3977637	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:3977637G>A	uc002fxe.2	-	24	3556	c.3492C>T	c.(3490-3492)ACC>ACT	p.T1164T		NM_015113	NP_055928	O43149	ZZEF1_HUMAN	zinc finger, ZZ type with EF hand domain 1	1164							calcium ion binding|zinc ion binding			ovary(2)|central_nervous_system(1)|pancreas(1)	4						CGGCCTTGAAGGTCACTTTCT	0.488											OREG0024096	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	31	26					0	0	0.010818	0	0
PLD2	5338	broad.mit.edu	37	17	4726072	4726072	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:4726072C>T	uc002fzc.2	+	25	2816	c.2715C>T	c.(2713-2715)CAC>CAT	p.H905H	PLD2_uc002fzd.2_Silent_p.H894H	NM_002663	NP_002654	O14939	PLD2_HUMAN	phospholipase D2	905					cell communication|cytoskeleton organization|small GTPase mediated signal transduction		NAPE-specific phospholipase D activity|phosphatidylinositol binding|phospholipase D activity			breast(2)|upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	5					Choline(DB00122)	ACCTGGTCCACTTCCCCCTCA	0.637													29	22					0	0	0.003271	0	0
USP6	9098	broad.mit.edu	37	17	5042816	5042816	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:5042816C>T	uc002gau.1	+	22	3575	c.1345C>T	c.(1345-1347)CTG>TTG	p.L449L	USP6_uc002gav.1_Silent_p.L449L|USP6_uc010ckz.1_Silent_p.L132L|uc002gbd.2_5'Flank	NM_004505	NP_004496	P35125	UBP6_HUMAN	ubiquitin specific protease 6	449					protein deubiquitination|regulation of vesicle-mediated transport|ubiquitin-dependent protein catabolic process	lysosome|plasma membrane|recycling endosome	calmodulin binding|cysteine-type endopeptidase activity|nucleic acid binding|protein binding|Rab GTPase activator activity|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			skin(2)|upper_aerodigestive_tract(1)|lung(1)|breast(1)	5						CTGGAGATTCCTGGAGTGGAA	0.617			T	COL1A1|CDH11|ZNF9|OMD	aneurysmal bone cysts								26	25					0	0	0.009535	0	0
SLC16A11	162515	broad.mit.edu	37	17	6945846	6945846	+	Missense_Mutation	SNP	G	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:6945846G>T	uc002gei.1	-	3	993	c.655C>A	c.(655-657)CTT>ATT	p.L219I		NM_153357	NP_699188	Q8NCK7	MOT11_HUMAN	solute carrier family 16, member 11	219	Extracellular (Potential).					integral to membrane|plasma membrane	symporter activity			ovary(1)	1						TCTCCAGGAAGGACCAGGGGT	0.662													3	2					0.004672	0.00498156	0.004672	1	0
SLC2A4	6517	broad.mit.edu	37	17	7186890	7186890	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:7186890C>T	uc002gfp.2	+	3	449	c.249C>T	c.(247-249)CTC>CTT	p.L83L	SLC2A4_uc002gfo.2_Silent_p.L83L|SLC2A4_uc010cmd.2_RNA	NM_001042	NP_001033	P14672	GTR4_HUMAN	glucose transporter 4	83	Helical; Name=2; (Potential).				carbohydrate metabolic process|glucose homeostasis|glucose import	external side of plasma membrane|integral to plasma membrane|perinuclear region of cytoplasm	D-glucose transmembrane transporter activity|protein binding				0						TCTGGGCCCTCTCCGTGGCCA	0.612													20	56					0	0	0.002780	0	0
KCTD11	147040	broad.mit.edu	37	17	7256688	7256688	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:7256688G>A	uc002gge.3	+	1	1481	c.427G>A	c.(427-429)GTG>ATG	p.V143M	TMEM95_uc002ggf.1_5'Flank|TMEM95_uc002ggg.1_5'Flank|TMEM95_uc002ggh.1_5'Flank	NM_001002914	NP_001002914	Q693B1	KCD11_HUMAN	potassium channel tetramerisation domain	143					cell cycle|regulation of growth	voltage-gated potassium channel complex	voltage-gated potassium channel activity				0		Prostate(122;0.157)				CCGATTTGGTGTGGCCAGTGG	0.617													44	33					0	0	0.014410	0	0
SPEM1	374768	broad.mit.edu	37	17	7324787	7324787	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:7324787C>T	uc002ggv.2	+	3	818	c.793C>T	c.(793-795)CGG>TGG	p.R265W	FGF11_uc010vtw.1_5'UTR	NM_199339	NP_955371	Q8N4L4	SPEM1_HUMAN	spermatid maturation 1	265	Potential.				cell differentiation|multicellular organismal development|spermatogenesis	cytoplasm|integral to membrane					0		Prostate(122;0.173)				GTATGATGCCCGGGACATGAG	0.652													7	13					0	0	0.001984	0	0
TP53	7157	broad.mit.edu	37	17	7577070	7577070	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:7577070G>A	uc002gim.2	-	8	1062	c.868C>T	c.(868-870)CGC>TGC	p.R290C	TP53_uc002gig.1_Intron|TP53_uc002gih.2_Missense_Mutation_p.R290C|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.R158C|TP53_uc010cng.1_Missense_Mutation_p.R158C|TP53_uc002gii.1_Missense_Mutation_p.R158C|TP53_uc010cnh.1_Missense_Mutation_p.R290C|TP53_uc010cni.1_Missense_Mutation_p.R290C|TP53_uc002gij.2_Missense_Mutation_p.R290C	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	290	|Interaction with E4F1.|Interaction with HIPK1 (By similarity).|Interaction with AXIN1 (By similarity).		R -> C (in sporadic cancers; somatic mutation).|R -> L (in LFS; germline mutation and in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.R290H(18)|p.N288fs*13(17)|p.0?(7)|p.R290L(4)|p.R290C(3)|p.?(2)|p.R290R(2)|p.R290fs*55(1)|p.T284_G293del10(1)|p.L265_K305del41(1)|p.N288fs*15(1)|p.R290fs*12(1)|p.R290fs*50(1)|p.K291fs*12(1)|p.R290fs*57(1)|p.R290_P295>X(1)|p.E285fs*13(1)|p.R290S(1)|p.V272_K292del21(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		CCTTTCTTGCGGAGATTCTCT	0.567		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			17	17					0	0	0.006122	0	0
TP53	7157	broad.mit.edu	37	17	7578453	7578454	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:7578453_7578454GG>AA	uc002gim.2	-	5	670_671	c.476_477CC>TT	c.(475-477)GCC>GTT	p.A159V	TP53_uc002gig.1_Missense_Mutation_p.A159V|TP53_uc002gih.2_Missense_Mutation_p.A159V|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.A27V|TP53_uc010cng.1_Missense_Mutation_p.A27V|TP53_uc002gii.1_Missense_Mutation_p.A27V|TP53_uc010cnh.1_Missense_Mutation_p.A159V|TP53_uc010cni.1_Missense_Mutation_p.A159V|TP53_uc002gij.2_Missense_Mutation_p.A159V|TP53_uc010cnj.1_RNA|TP53_uc002gin.2_Missense_Mutation_p.A66V|TP53_uc002gio.2_Missense_Mutation_p.A27V|TP53_uc010vug.1_Missense_Mutation_p.A120V	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	159	Required for interaction with FBXO42.||Interaction with HIPK1 (By similarity).|Interaction with AXIN1 (By similarity).		A -> G (in sporadic cancers; somatic mutation).|A -> T (in sporadic cancers; somatic mutation).|A -> V (in sporadic cancers; somatic mutation).|A -> P (in sporadic cancers; somatic mutation).|A -> D (in sporadic cancers; somatic mutation).|A -> S (in sporadic cancers; somatic mutation).|A -> F (in a sporadic cancer; somatic mutation; requires 2 nucleotide substitutions).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.A159V(30)|p.A159P(13)|p.A159A(8)|p.A159T(7)|p.A159D(7)|p.0?(7)|p.A159fs*11(5)|p.A159S(4)|p.R158_A159insX(4)|p.R158_A159delRA(2)|p.R156_I162delRVRAMAI(2)|p.V157fs*9(2)|p.A159fs*21(2)|p.V157_C176del20(1)|p.R156_A161delRVRAMA(1)|p.P151_V173del23(1)|p.R156fs*18(1)|p.R156_A161del(1)|p.R158_A159insXX(1)|p.V157_M160delVRAM(1)|p.S149fs*72(1)|p.T155_A161delTRVRAMA(1)|p.R156fs*20(1)|p.V157_I162delVRAMAI(1)|p.A159_Q167delAMAIYKQSQ(1)|p.V157fs*21(1)|p.R158fs*8(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		AGATGGCCATGGCGCGGACGCG	0.629		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			19	27					0	0	0.004672	0	0
DNAH2	146754	broad.mit.edu	37	17	7695363	7695363	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:7695363G>A	uc002giu.1	+	44	7043	c.7029G>A	c.(7027-7029)GAG>GAA	p.E2343E		NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	2343					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				ACCTCCGAGAGATCGAGGGCT	0.557													15	20					0	0	0.004007	0	0
ALOX12B	242	broad.mit.edu	37	17	7979644	7979644	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:7979644C>T	uc002gjy.1	-	11	1642	c.1381G>A	c.(1381-1383)GAA>AAA	p.E461K		NM_001139	NP_001130	O75342	LX12B_HUMAN	arachidonate 12-lipoxygenase, 12R type	461	Lipoxygenase.				epidermis development|leukotriene biosynthetic process		arachidonate 12-lipoxygenase activity|iron ion binding|lipoxygenase activity				0						GCAAAGCCTTCCACGCCCAGG	0.617										Multiple Myeloma(8;0.094)			3	5					0	0	0.004672	0	0
ALOX12B	242	broad.mit.edu	37	17	7980338	7980338	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:7980338C>T	uc002gjy.1	-	9	1506	c.1245G>A	c.(1243-1245)AGG>AGA	p.R415R	uc010cnq.1_5'Flank	NM_001139	NP_001130	O75342	LX12B_HUMAN	arachidonate 12-lipoxygenase, 12R type	415	Lipoxygenase.				epidermis development|leukotriene biosynthetic process		arachidonate 12-lipoxygenase activity|iron ion binding|lipoxygenase activity				0						TGGGCAGGTTCCTCAGCAAGG	0.632										Multiple Myeloma(8;0.094)			7	8					0	0	0.003080	0	0
C17orf68	80169	broad.mit.edu	37	17	8135484	8135484	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:8135484G>A	uc002gkq.3	-	13	2181	c.2122C>T	c.(2122-2124)CAT>TAT	p.H708Y	C17orf68_uc010cnv.2_RNA	NM_025099	NP_079375	Q2NKJ3	CTC1_HUMAN	alpha accessory factor 132	708					positive regulation of DNA replication|telomere maintenance	Stn1-Ten1 complex	protein binding|single-stranded DNA binding				0						GTTGCTGAATGAAGGCAGGGT	0.557													3	3					0	0	0.004672	0	0
CCDC42	146849	broad.mit.edu	37	17	8644972	8644972	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:8644972C>T	uc002gln.2	-	4	539	c.312G>A	c.(310-312)CGG>CGA	p.R104R	CCDC42_uc002glo.2_Silent_p.R104R	NM_144681	NP_653282	Q96M95	CCD42_HUMAN	coiled-coil domain containing 42 isoform 1	104	Potential.									ovary(1)	1						TGGCGCGGATCCGTTTCTGGT	0.672													11	5					0	0	0.008291	0	0
USP43	124739	broad.mit.edu	37	17	9586206	9586206	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:9586206C>T	uc010cod.2	+	7	1172	c.1172C>T	c.(1171-1173)TCT>TTT	p.S391F	USP43_uc002gma.3_Missense_Mutation_p.S80F|USP43_uc010vva.1_Missense_Mutation_p.S391F|USP43_uc010coe.2_Missense_Mutation_p.S188F	NM_153210	NP_694942	Q70EL4	UBP43_HUMAN	ubiquitin specific protease 43	391					ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5						TTCTCCCTCTCTCTCCACAGT	0.527													31	17					0	0	0.009535	0	0
MYH13	8735	broad.mit.edu	37	17	10258308	10258308	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:10258308G>A	uc002gmk.1	-	10	895	c.805C>T	c.(805-807)CTG>TTG	p.L269L		NM_003802	NP_003793	Q9UKX3	MYH13_HUMAN	myosin, heavy polypeptide 13, skeletal muscle	269	Myosin head-like.				muscle contraction	muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|skin(2)	6						TTTTCTAACAGATCTAAGGTA	0.368													14	9					0	0	0.004990	0	0
MYH13	8735	broad.mit.edu	37	17	10265528	10265528	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:10265528C>T	uc002gmk.1	-	5	502	c.412G>A	c.(412-414)GAG>AAG	p.E138K		NM_003802	NP_003793	Q9UKX3	MYH13_HUMAN	myosin, heavy polypeptide 13, skeletal muscle	138	Myosin head-like.				muscle contraction	muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|skin(2)	6						GCCACCACCTCGGGCTTGTAC	0.537													21	37					0	0	0.013726	0	0
MYH13	8735	broad.mit.edu	37	17	10267715	10267715	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:10267715C>T	uc002gmk.1	-	3	223	c.133G>A	c.(133-135)GAA>AAA	p.E45K		NM_003802	NP_003793	Q9UKX3	MYH13_HUMAN	myosin, heavy polypeptide 13, skeletal muscle	45	Myosin head-like.				muscle contraction	muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|skin(2)	6						ACATACATTTCCTTATTATCC	0.448													4	9					0	0	0.009096	0	0
MYH8	4626	broad.mit.edu	37	17	10298471	10298471	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:10298471C>T	uc002gmm.2	-	34	5036	c.4941G>A	c.(4939-4941)AGG>AGA	p.R1647R	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	1647	Potential.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						CTTGGGTGTTCCTGTAGTTCC	0.458									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				86	67					0	0	0.014410	0	0
MYH8	4626	broad.mit.edu	37	17	10304266	10304266	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:10304266C>T	uc002gmm.2	-	26	3360	c.3265G>A	c.(3265-3267)GAA>AAA	p.E1089K	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	1089	Potential.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						TTGCTGATTTCAAATTCTTTC	0.333									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				9	11					0	0	0.004482	0	0
MYH8	4626	broad.mit.edu	37	17	10307766	10307766	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:10307766C>T	uc002gmm.2	-	22	2664	c.2569G>A	c.(2569-2571)GAA>AAA	p.E857K	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	857	Potential.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						TGGAATTCTTCCTTCATGGTG	0.448									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				16	64					0	0	0.004007	0	0
MYH8	4626	broad.mit.edu	37	17	10321993	10321993	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:10321993G>A	uc002gmm.2	-	5	575	c.480C>T	c.(478-480)ATC>ATT	p.I160I	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	160	Myosin head-like.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						CATTGTCAGAGATGGAGAAGA	0.517									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				53	55					0	0	0.014410	0	0
MYH1	4619	broad.mit.edu	37	17	10402081	10402081	+	Missense_Mutation	SNP	C	T	T	rs146728905		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:10402081C>T	uc002gmo.2	-	30	4137	c.4043G>A	c.(4042-4044)CGG>CAG	p.R1348Q	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	1348	Potential.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						ATACTGTTCCCGCAGCAGGTC	0.507													32	28					0	0	0.006999	0	0
MYH1	4619	broad.mit.edu	37	17	10412913	10412913	+	Silent	SNP	G	A	A	rs141597159		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:10412913G>A	uc002gmo.2	-	15	1570	c.1476C>T	c.(1474-1476)TTC>TTT	p.F492F	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	492	Myosin head-like.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity	p.F492F(1)		ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						TGTGGTGGTTGAAAAACTGTT	0.443													35	24					0	0	0.003755	0	0
MYH1	4619	broad.mit.edu	37	17	10412965	10412965	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:10412965C>T	uc002gmo.2	-	15	1518	c.1424G>A	c.(1423-1425)AGC>AAC	p.S475N	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	475	Myosin head-like.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						CTGCTCCAGGCTGTTGAACTA	0.398													30	28					0	0	0.010818	0	0
MYH2	4620	broad.mit.edu	37	17	10432014	10432014	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:10432014T>C	uc010coi.2	-	27	3865	c.3737A>G	c.(3736-3738)AAA>AGA	p.K1246R	uc002gml.1_Intron|MYH2_uc002gmp.3_Missense_Mutation_p.K1246R|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	1246	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						TACCTTGGCTTTGGAGACCGT	0.303													13	59					0	0	0.004007	0	0
MYH2	4620	broad.mit.edu	37	17	10432367	10432367	+	Silent	SNP	G	A	A	rs139130605		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:10432367G>A	uc010coi.2	-	27	3512	c.3384C>T	c.(3382-3384)ATC>ATT	p.I1128I	uc002gml.1_Intron|MYH2_uc002gmp.3_Silent_p.I1128I|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	1128	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						GCTCTGCCTCGATTTCCTCCT	0.582													22	11					0	0	0.003330	0	0
MYH2	4620	broad.mit.edu	37	17	10440619	10440619	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:10440619C>T	uc010coi.2	-	16	1956	c.1828G>A	c.(1828-1830)GGA>AGA	p.G610R	uc002gml.1_Intron|MYH2_uc002gmp.3_Missense_Mutation_p.G610R|MYH2_uc010coj.2_Missense_Mutation_p.G610R	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	610	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						TGGTACAGTCCAACCACGGTC	0.483													55	59					0	0	0.014410	0	0
MYH2	4620	broad.mit.edu	37	17	10443995	10443995	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:10443995C>T	uc010coi.2	-	11	1052	c.924G>A	c.(922-924)ACG>ACA	p.T308T	uc002gml.1_Intron|MYH2_uc002gmp.3_Silent_p.T308T|MYH2_uc010coj.2_Silent_p.T308T	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	308	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						CATATGGGTTCGTGGTAATCA	0.388													14	18					0	0	0.004007	0	0
DNAH9	1770	broad.mit.edu	37	17	11556254	11556254	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:11556254G>A	uc002gne.2	+	14	2598	c.2530G>A	c.(2530-2532)GAT>AAT	p.D844N	DNAH9_uc010coo.2_Missense_Mutation_p.D138N	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	844	Stem (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		TGATCGGCATGATCGAATGGA	0.418													12	32					0	0	0.013537	0	0
DNAH9	1770	broad.mit.edu	37	17	11556305	11556305	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:11556305C>T	uc002gne.2	+	14	2649	c.2581C>T	c.(2581-2583)CAC>TAC	p.H861Y	DNAH9_uc010coo.2_Missense_Mutation_p.H155Y	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	861	Stem (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		CCTTAAGATCCACGCCCTTGT	0.418													11	12					0	0	0.010729	0	0
DNAH9	1770	broad.mit.edu	37	17	11583117	11583117	+	Silent	SNP	T	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:11583117T>C	uc002gne.2	+	18	3465	c.3397T>C	c.(3397-3399)TTA>CTA	p.L1133L	DNAH9_uc010coo.2_Silent_p.L427L	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	1133	Stem (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		TGAGAGCGGCTTACTCAAGAA	0.433													35	46					0	0	0.007835	0	0
DNAH9	1770	broad.mit.edu	37	17	11584087	11584087	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:11584087G>A	uc002gne.2	+	19	3692	c.3624G>A	c.(3622-3624)GTG>GTA	p.V1208V	DNAH9_uc010coo.2_Silent_p.V502V	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	1208	Stem (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		CCATTACTGTGAAGCAGCAGG	0.527													8	11					0	0	0.006214	0	0
DNAH9	1770	broad.mit.edu	37	17	11592949	11592949	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:11592949C>T	uc002gne.2	+	20	3878	c.3810C>T	c.(3808-3810)TCC>TCT	p.S1270S	DNAH9_uc010coo.2_Silent_p.S564S	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	1270	Stem (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		AGATGGAATCCACTATGGCCT	0.488													35	26					0	0	0.003755	0	0
DNAH9	1770	broad.mit.edu	37	17	11648291	11648291	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:11648291C>T	uc002gne.2	+	31	6357	c.6289C>T	c.(6289-6291)CTC>TTC	p.L2097F	DNAH9_uc010coo.2_Missense_Mutation_p.L1391F	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	2097					cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		GATCGGGGACCTCTTTCCCGC	0.572													15	16					0	0	0.002450	0	0
DNAH9	1770	broad.mit.edu	37	17	11666923	11666923	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:11666923C>T	uc002gne.2	+	36	7230	c.7162C>T	c.(7162-7164)CAA>TAA	p.Q2388*	DNAH9_uc010coo.2_Nonsense_Mutation_p.Q1682*	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	2388					cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		AGCAATGGTCCAAGATCAGGT	0.463													10	14					0	0	0.006214	0	0
DNAH9	1770	broad.mit.edu	37	17	11809055	11809055	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:11809055C>T	uc002gne.2	+	61	11746	c.11678C>T	c.(11677-11679)TCG>TTG	p.S3893L	DNAH9_uc010coo.2_Missense_Mutation_p.S3187L|DNAH9_uc002gnf.2_Missense_Mutation_p.S205L|DNAH9_uc010vvh.1_Missense_Mutation_p.S246L	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	3893	AAA 6 (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		TTTGAAGAATCGGGACCAGCC	0.468													17	15					0	0	0.004990	0	0
RICH2	9912	broad.mit.edu	37	17	12812265	12812265	+	Missense_Mutation	SNP	A	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:12812265A>T	uc002gnr.3	+	4	577	c.250A>T	c.(250-252)ATC>TTC	p.I84F	RICH2_uc010vvk.1_Missense_Mutation_p.I84F|RICH2_uc010vvl.1_Missense_Mutation_p.I84F|RICH2_uc002gns.3_5'UTR|RICH2_uc010vvm.1_Missense_Mutation_p.I84F|RICH2_uc010vvn.1_RNA	NM_014859	NP_055674	Q17R89	RHG44_HUMAN	Rho GTPase-activating protein RICH2	84	BAR.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity				0						GGGGTCAGCTATCCTGGGAGA	0.458													71	64					0	0	0.014410	0	0
TEKT3	64518	broad.mit.edu	37	17	15212016	15212016	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:15212016C>T	uc002gon.2	-	8	1408	c.1221G>A	c.(1219-1221)CCG>CCA	p.P407P		NM_031898	NP_114104	Q9BXF9	TEKT3_HUMAN	tektin 3	407					microtubule cytoskeleton organization	cilium axoneme|flagellar axoneme|microtubule				ovary(2)	2				UCEC - Uterine corpus endometrioid carcinoma (92;0.0877)		ACTCAATGTTCGGCCGTCTTG	0.577													32	28					0	0	0.003271	0	0
TRIM16	10626	broad.mit.edu	37	17	15519090	15519090	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:15519090G>A	uc002gor.1	-	8	1806	c.1469C>T	c.(1468-1470)TCC>TTC	p.S490F	CDRT1_uc002gov.3_Missense_Mutation_p.S180F			O95361	TRI16_HUMAN	SubName: Full=Putative uncharacterized protein; Flags: Fragment;	336	Potential.				histone H3 acetylation|histone H4 acetylation|positive regulation of interleukin-1 beta secretion|positive regulation of keratinocyte differentiation|positive regulation of retinoic acid receptor signaling pathway|positive regulation of transcription, DNA-dependent|response to growth hormone stimulus|response to organophosphorus|response to retinoic acid	cytoplasm|plasma membrane|PML body	DNA binding|interleukin-1 binding|NACHT domain binding|zinc ion binding			ovary(2)|skin(1)	3				UCEC - Uterine corpus endometrioid carcinoma (92;0.0839)|Epithelial(1;8.4e-29)|all cancers(1;3.06e-28)|Colorectal(1;1.57e-19)|OV - Ovarian serous cystadenocarcinoma(1;6.1e-17)|COAD - Colon adenocarcinoma(1;3.38e-12)|READ - Rectum adenocarcinoma(2;1.46e-05)|BRCA - Breast invasive adenocarcinoma(8;0.0559)		TTTCTCAGGGGAAAAACACAC	0.473													12	20					0	0	0.013537	0	0
ZNF287	57336	broad.mit.edu	37	17	16466462	16466462	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:16466462G>A	uc002gqi.2	-	5	1166	c.713C>T	c.(712-714)CCA>CTA	p.P238L		NM_020653	NP_065704	Q9HBT7	ZN287_HUMAN	zinc finger protein 287	231	KRAB.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0				UCEC - Uterine corpus endometrioid carcinoma (92;0.083)		TTTCTCACCTGGACTAGGGCC	0.378													24	21					0	0	0.004656	0	0
CCDC144A	9720	broad.mit.edu	37	17	16593718	16593718	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:16593718G>A	uc002gqk.1	+	1	80	c.4G>A	c.(4-6)GCC>ACC	p.A2T		NM_014695	NP_055510	A2RUR9	C144A_HUMAN	coiled-coil domain containing 144A	2											0						GCTACTGATGGCCTCCTGGGG	0.647													4	3					0	0	0.009096	0	0
RAI1	10743	broad.mit.edu	37	17	17700534	17700534	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:17700534C>T	uc002grm.2	+	3	4741	c.4272C>T	c.(4270-4272)TTC>TTT	p.F1424F	RAI1_uc002grn.1_Silent_p.F1424F	NM_030665	NP_109590	Q7Z5J4	RAI1_HUMAN	retinoic acid induced 1	1424						cytoplasm|nucleus	zinc ion binding			central_nervous_system(1)|skin(1)	2				READ - Rectum adenocarcinoma(1115;0.0276)		CTGACTGTTTCAAAACCGAGG	0.557													29	35					0	0	0.003271	0	0
FBXW10	10517	broad.mit.edu	37	17	18671950	18671950	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:18671950G>A	uc002guk.2	+	10	2040	c.1808G>A	c.(1807-1809)GGG>GAG	p.G603E	FBXW10_uc002guj.2_Missense_Mutation_p.G603E|FBXW10_uc002gul.2_Missense_Mutation_p.G632E|FBXW10_uc010cqh.1_Missense_Mutation_p.G603E	NM_031456	NP_113644	Q5XX13	FBW10_HUMAN	F-box and WD-40 domain protein 10	603	WD 6.									ovary(1)	1						AGCATGGTGGGGAAGTACGAG	0.582													12	14					0	0	0.004007	0	0
FBXW10	10517	broad.mit.edu	37	17	18673314	18673314	+	Missense_Mutation	SNP	A	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:18673314A>T	uc002guk.2	+	11	2154	c.1922A>T	c.(1921-1923)AAT>ATT	p.N641I	FBXW10_uc002guj.2_Missense_Mutation_p.N641I|FBXW10_uc002gul.2_Missense_Mutation_p.N670I|FBXW10_uc010cqh.1_Intron	NM_031456	NP_113644	Q5XX13	FBW10_HUMAN	F-box and WD-40 domain protein 10	641	WD 7.									ovary(1)	1						CGAATTTACAATTTCCTCAAC	0.527													70	72					0	0	0.014410	0	0
CCDC144C	348254	broad.mit.edu	37	17	20239232	20239232	+	RNA	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:20239232C>T	uc010cqy.1	+	3		c.646C>T				NR_023380				Homo sapiens cDNA FLJ59693 complete cds, moderately similar to Ankyrin repeat domain-containing protein 26.												0						CCATCTGTATCACCATCAATG	0.413													24	30					0	0	0.007291	0	0
LGALS9B	284194	broad.mit.edu	37	17	20361571	20361571	+	Missense_Mutation	SNP	C	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:20361571C>G	uc002gxa.1	-	3	323	c.258G>C	c.(256-258)GAG>GAC	p.E86D	LGALS9B_uc002gwz.1_Missense_Mutation_p.E86D|LGALS9B_uc010vzh.1_5'UTR	NM_001042685	NP_001036150	Q3B8N2	LEG9B_HUMAN	galectin-9 like	86	Beta-galactoside binding 1 (By similarity).|Galectin 1.						sugar binding			skin(1)	1						GCATCTTCCTCTCCTCGGGCC	0.552													28	83					0	0	0.008361	0	0
USP22	23326	broad.mit.edu	37	17	20921375	20921375	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:20921375G>A	uc002gym.3	-	5	774	c.570C>T	c.(568-570)ATC>ATT	p.I190I	USP22_uc002gyn.3_Silent_p.I178I|USP22_uc002gyl.3_Silent_p.I85I	NM_015276	NP_056091	Q9UPT9	UBP22_HUMAN	ubiquitin thiolesterase 22	190					cell cycle|embryo development|histone deubiquitination|histone H4 acetylation|histone ubiquitination|positive regulation of mitotic cell cycle|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent|ubiquitin-dependent protein catabolic process	SAGA complex	ligand-dependent nuclear receptor transcription coactivator activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			lung(1)	1						GGGCCTGCACGATGCAGTTCA	0.572													15	43					0	0	0.004990	0	0
NOS2	4843	broad.mit.edu	37	17	26101376	26101376	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:26101376C>T	uc002gzu.2	-	12	1647	c.1383G>A	c.(1381-1383)TGG>TGA	p.W461*	NOS2_uc010crh.1_Nonsense_Mutation_p.W461*|NOS2_uc010wab.1_Nonsense_Mutation_p.W461*	NM_000625	NP_000616	P35228	NOS2_HUMAN	nitric oxide synthase 2A	461					arginine catabolic process|defense response to Gram-negative bacterium|innate immune response in mucosa|nitric oxide biosynthetic process|peptidyl-cysteine S-nitrosylation|platelet activation|positive regulation of killing of cells of other organism|positive regulation of leukocyte mediated cytotoxicity|regulation of cellular respiration|regulation of insulin secretion|superoxide metabolic process	cytosol|nucleus	arginine binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|protein homodimerization activity|tetrahydrobiopterin binding			skin(2)|ovary(1)|breast(1)	4					Dexamethasone(DB01234)|Hydrocortisone(DB00741)|L-Arginine(DB00125)|L-Citrulline(DB00155)	CCAGCCAAATCCAGTCTGCCG	0.552													18	20					0	0	0.007413	0	0
FLJ40504	284085	broad.mit.edu	37	17	26604151	26604151	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:26604151C>T	uc002has.3	-	3	420	c.324G>A	c.(322-324)CTG>CTA	p.L108L		NM_173624	NP_775895			SubName: Full=Putative uncharacterized protein FLJ40504; SubName: Full=cDNA FLJ40504 fis, clone TESTI2045509, highly similar to KERATIN, TYPE I CYTOSKELETAL 18;												0	all_lung(13;0.000238)|Lung NSC(42;0.000789)			UCEC - Uterine corpus endometrioid carcinoma (53;0.155)		CCATTCCTGCCAGACCCCCGG	0.602													25	28					0	0	0.003954	0	0
FLJ40504	284085	broad.mit.edu	37	17	26604187	26604187	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:26604187C>T	uc002has.3	-	3	384	c.288G>A	c.(286-288)GGG>GGA	p.G96G		NM_173624	NP_775895			SubName: Full=Putative uncharacterized protein FLJ40504; SubName: Full=cDNA FLJ40504 fis, clone TESTI2045509, highly similar to KERATIN, TYPE I CYTOSKELETAL 18;												0	all_lung(13;0.000238)|Lung NSC(42;0.000789)			UCEC - Uterine corpus endometrioid carcinoma (53;0.155)		GGCCCCTGGACCCCATGCTGC	0.617													18	19					0	0	0.010504	0	0
NF1	4763	broad.mit.edu	37	17	29679366	29679366	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:29679366C>T	uc002hgg.2	+	51	7882	c.7549C>T	c.(7549-7551)CGA>TGA	p.R2517*	NF1_uc002hgh.2_Nonsense_Mutation_p.R2496*|NF1_uc010cso.2_Nonsense_Mutation_p.R705*|NF1_uc010wbt.1_Intron|NF1_uc010wbu.1_RNA	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1	2517					actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity			soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		GACCAGTCCCCGAGCCAGGAA	0.468			D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			15	14					0	0	0.003163	0	0
FNDC8	54752	broad.mit.edu	37	17	33457401	33457401	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:33457401G>A	uc002hix.2	+	4	1005	c.923G>A	c.(922-924)GGG>GAG	p.G308E		NM_017559	NP_060029	Q8TC99	FNDC8_HUMAN	fibronectin type III domain containing 8	308										ovary(2)	2		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.022)		GTGTCCATCGGGCCGGAGGAG	0.582													39	21					0	0	0.005524	0	0
GAS2L2	246176	broad.mit.edu	37	17	34074268	34074268	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:34074268G>A	uc002hjv.1	-	5	880	c.852C>T	c.(850-852)TTC>TTT	p.F284F		NM_139285	NP_644814	Q8NHY3	GA2L2_HUMAN	growth arrest-specific 2 like 2	284					cell cycle arrest	cytoplasm|cytoskeleton				ovary(1)|skin(1)	2		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		GGGGCTTCAGGAAGCTGCCTG	0.597													106	73					0	0	0.014410	0	0
LYZL6	57151	broad.mit.edu	37	17	34264881	34264881	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:34264881G>A	uc002hkj.1	-	2	329	c.179C>T	c.(178-180)TCA>TTA	p.S60L	LYZL6_uc002hkk.1_Missense_Mutation_p.S60L	NM_020426	NP_065159	O75951	LYZL6_HUMAN	lysozyme-like 6 precursor	60					cell wall macromolecule catabolic process	extracellular region	lysozyme activity				0				UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		ATTTATCTTTGATATGTTGAA	0.443													39	18					0	0	0.006999	0	0
TBC1D3B	414059	broad.mit.edu	37	17	34499226	34499226	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:34499226C>T	uc002hky.2	-	7	635	c.485G>A	c.(484-486)CGA>CAA	p.R162Q	uc002hla.1_5'Flank|uc002hlc.2_5'Flank	NM_001001417	NP_001001417	Q8IZP1	TBC3A_HUMAN	TBC1 domain family, member 3B	162	Rab-GAP TBC.					intracellular	Rab GTPase activator activity				0		Breast(25;0.102)|Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		GGTTCCGTATCGATCCCTGAA	0.567													117	401					0	0	0.014410	0	0
GPR179	440435	broad.mit.edu	37	17	36482961	36482961	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:36482961C>T	uc002hpz.2	-	11	6512	c.6491G>A	c.(6490-6492)GGG>GAG	p.G2164E		NM_001004334	NP_001004334	Q6PRD1	GP179_HUMAN	GPR158-like 1 precursor	2164	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)	3	Breast(7;2.97e-12)	Breast(25;0.0101)|Ovarian(249;0.15)				TTCTTCCGTCCCTCCAGGTCC	0.592													60	31					0	0	0.014410	0	0
GPR179	440435	broad.mit.edu	37	17	36499484	36499484	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:36499484G>A	uc002hpz.2	-	1	210	c.189C>T	c.(187-189)CTC>CTT	p.L63L		NM_001004334	NP_001004334	Q6PRD1	GP179_HUMAN	GPR158-like 1 precursor	63	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)	3	Breast(7;2.97e-12)	Breast(25;0.0101)|Ovarian(249;0.15)				CTCCAGAGTAGAGATAAGCGA	0.632													26	35					0	0	0.005443	0	0
CWC25	54883	broad.mit.edu	37	17	36977268	36977268	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:36977268G>A	uc002hqu.2	-	2	230	c.77C>T	c.(76-78)GCC>GTC	p.A26V	CWC25_uc010wdv.1_5'UTR|CWC25_uc010wdx.1_RNA	NM_017748	NP_060218	Q9NXE8	CWC25_HUMAN	coiled-coil domain containing 49	26	Potential.										0						CTTCTGCTCGGCCTTCCACAC	0.537													40	28					0	0	0.009718	0	0
TNS4	84951	broad.mit.edu	37	17	38645208	38645208	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:38645208G>A	uc010cxb.2	-	3	617	c.453C>T	c.(451-453)ATC>ATT	p.I151I		NM_032865	NP_116254	Q8IZW8	TENS4_HUMAN	tensin 4 precursor	151					apoptosis|protein localization	cytoplasm|cytoskeleton|focal adhesion	actin binding			large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(5;5.91e-05)			AGGTCACCTCGATGTACTTTA	0.473													47	23					0	0	0.014410	0	0
TNS4	84951	broad.mit.edu	37	17	38652542	38652542	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:38652542C>T	uc010cxb.2	-	2	300	c.136G>A	c.(136-138)GAA>AAA	p.E46K		NM_032865	NP_116254	Q8IZW8	TENS4_HUMAN	tensin 4 precursor	46					apoptosis|protein localization	cytoplasm|cytoskeleton|focal adhesion	actin binding			large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(5;5.91e-05)			CCCCAGCCTTCCGTGGTGTAG	0.677													37	12					0	0	0.004878	0	0
KRT24	192666	broad.mit.edu	37	17	38859631	38859631	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:38859631G>A	uc002hvd.2	-	1	372	c.315C>T	c.(313-315)TTC>TTT	p.F105F		NM_019016	NP_061889	Q2M2I5	K1C24_HUMAN	keratin 24	105	Head.|Gly-rich.					cytoplasm|intermediate filament	structural molecule activity				0		Breast(137;0.00526)				AACTCCCACAGAATCCAGAAC	0.567													23	80					0	0	0.012319	0	0
KRT26	353288	broad.mit.edu	37	17	38928356	38928356	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:38928356G>A	uc002hvf.2	-	1	56	c.10C>T	c.(10-12)CGA>TGA	p.R4*		NM_181539	NP_853517	Q7Z3Y9	K1C26_HUMAN	keratin 26	4	Head.					intermediate filament	structural molecule activity				0		Breast(137;0.00526)				CCAGAAAGTCGAAAAGACATG	0.557													47	17					0	0	0.010771	0	0
KRT28	162605	broad.mit.edu	37	17	38950178	38950178	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:38950178C>T	uc002hvh.1	-	6	1165	c.1099G>A	c.(1099-1101)GAG>AAG	p.E367K		NM_181535	NP_853513	Q7Z3Y7	K1C28_HUMAN	keratin 25D	367	Rod.|Coil 2.					cytoplasm|intermediate filament	structural molecule activity			ovary(1)	1		Breast(137;0.000301)				TTCTGGCCCTCGGTCTCGGTT	0.552													90	64					0	0	0.014410	0	0
KRT28	162605	broad.mit.edu	37	17	38950184	38950184	+	Missense_Mutation	SNP	C	T	T	rs144664854	byFrequency	TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:38950184C>T	uc002hvh.1	-	6	1159	c.1093G>A	c.(1093-1095)GAG>AAG	p.E365K		NM_181535	NP_853513	Q7Z3Y7	K1C28_HUMAN	keratin 25D	365	Rod.|Coil 2.					cytoplasm|intermediate filament	structural molecule activity			ovary(1)	1		Breast(137;0.000301)				CCCTCGGTCTCGGTTCTGACC	0.567													26	131					0	0	0.005443	0	0
KRTAP4-11	653240	broad.mit.edu	37	17	39274205	39274205	+	Silent	SNP	T	C	C	rs80322614		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:39274205T>C	uc002hvz.2	-	1	402	c.363A>G	c.(361-363)AGA>AGG	p.R121R		NM_033059	NP_149048	Q9BYQ6	KR411_HUMAN	keratin associated protein 4-11	121	20.|27 X 5 AA repeats of C-C-[GIKRQVHEL]- [SPTR]-[STVQRMC].					keratin filament					0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000371)			agcactggggtctgcagcagc	0.095													3	31					0	0	0.001168	0	0
KRTAP9-2	83899	broad.mit.edu	37	17	39382951	39382951	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:39382951G>A	uc002hwf.2	+	1	52	c.45G>A	c.(43-45)AGG>AGA	p.R15R		NM_031961	NP_114167	Q9BYQ4	KRA92_HUMAN	keratin associated protein 9.2	15	2.|17 X 5 AA repeats of C-C-[RQVSGE]-[SPTQ]- [TASP].					keratin filament	protein binding			upper_aerodigestive_tract(1)	1		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000397)			CCTGCTGCAGGACCACCTGCT	0.622													22	73					0	0	0.005443	0	0
KRT38	8687	broad.mit.edu	37	17	39595036	39595036	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:39595036C>T	uc002hwq.1	-	4	1230	c.807G>A	c.(805-807)CTG>CTA	p.L269L		NM_006771	NP_006762	O76015	KRT38_HUMAN	keratin 38	269	Coil 2.|Rod.					intermediate filament	structural molecule activity			skin(2)	2		Breast(137;0.000496)				GCACCCTGTTCAGGTCAATGG	0.582													53	35					0	0	0.014410	0	0
KRT32	3882	broad.mit.edu	37	17	39619137	39619137	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:39619137G>A	uc002hwr.2	-	6	1223	c.1162C>T	c.(1162-1164)CGG>TGG	p.R388W		NM_002278	NP_002269	Q14532	K1H2_HUMAN	keratin 32	388	Coil 2.|Rod.				epidermis development	intermediate filament	protein binding|structural molecule activity				0		Breast(137;0.000812)				CCCTCCAGCCGGGCCCGGACG	0.637													45	34					0	0	0.014410	0	0
KRT19	3880	broad.mit.edu	37	17	39684413	39684413	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:39684413G>A	uc002hxd.3	-	1	229	c.87C>T	c.(85-87)GTC>GTT	p.V29V	JUP_uc010wfs.1_Intron	NM_002276	NP_002267	P08727	K1C19_HUMAN	keratin 19	29	Head.				interspecies interaction between organisms|response to estrogen stimulus|sarcomere organization	costamere|intermediate filament	protein binding|structural constituent of cytoskeleton|structural constituent of muscle				0		Breast(137;0.00038)				CGCGAAAGGCGACCCCCGGCC	0.716													8	2					0	0	0.004482	0	0
KRT9	3857	broad.mit.edu	37	17	39727770	39727770	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:39727770C>T	uc002hxe.3	-	1	541	c.475G>A	c.(475-477)GAA>AAA	p.E159K	JUP_uc010wfs.1_Intron	NM_000226	NP_000217	P35527	K1C9_HUMAN	keratin 9	159	Rod.|Coil 1A.			MQELNSRLASYLDK -> HLGAGSTPITASQP (in Ref. 6; AAI21171).	intermediate filament organization|skin development		protein binding|structural constituent of cytoskeleton			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Breast(137;0.000307)				GAATTGAGTTCCTGCATGGTG	0.323													19	9					0	0	0.008871	0	0
JUP	3728	broad.mit.edu	37	17	39919277	39919277	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:39919277G>A	uc002hxq.2	-	8	1732	c.1455C>T	c.(1453-1455)ATC>ATT	p.I485I	JUP_uc010wfs.1_Intron|JUP_uc002hxr.2_Silent_p.I485I|JUP_uc002hxs.2_Silent_p.I485I	NM_021991	NP_068831	P14923	PLAK_HUMAN	junction plakoglobin	485	ARM 7.				adherens junction organization|atrioventricular valve morphogenesis|cell migration|cell morphogenesis|cellular response to indole-3-methanol|cytoskeletal anchoring at plasma membrane|detection of mechanical stimulus|ectoderm development|endothelial cell-cell adhesion|gastrulation|morphogenesis of embryonic epithelium|negative regulation of heart induction by canonical Wnt receptor signaling pathway|negative regulation of Wnt receptor signaling pathway involved in heart development|nervous system development|oocyte development|positive regulation of protein import into nucleus|positive regulation of sequence-specific DNA binding transcription factor activity|skin development	actin cytoskeleton|Axin-APC-beta-catenin-GSK3B complex|basolateral plasma membrane|catenin complex|desmosome|fascia adherens|gamma-catenin-TCF7L2 complex|internal side of plasma membrane|nucleus|protein-DNA complex|Z disc|zonula adherens	alpha-catenin binding|cadherin binding|protein homodimerization activity|protein kinase binding|protein phosphatase binding|RPTP-like protein binding|specific RNA polymerase II transcription factor activity|transcription coactivator activity			ovary(2)|lung(2)|breast(1)	5		Breast(137;0.000162)	BRCA - Breast invasive adenocarcinoma(4;0.233)	BRCA - Breast invasive adenocarcinoma(366;0.15)		GCAGCTTCACGATGGCTGGGA	0.607													17	25					0	0	0.007413	0	0
STAT5B	6777	broad.mit.edu	37	17	40384045	40384045	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:40384045A>G	uc002hzh.2	-	2	270	c.101T>C	c.(100-102)TTA>TCA	p.L34S	STAT5B_uc002hzi.3_Missense_Mutation_p.L34S	NM_012448	NP_036580	P51692	STA5B_HUMAN	signal transducer and activator of transcription	34					2-oxoglutarate metabolic process|allantoin metabolic process|citrate metabolic process|creatine metabolic process|creatinine metabolic process|fatty acid metabolic process|isoleucine metabolic process|JAK-STAT cascade involved in growth hormone signaling pathway|oxaloacetate metabolic process|response to estradiol stimulus|succinate metabolic process|taurine metabolic process|valine metabolic process	cytosol|nucleoplasm	calcium ion binding|glucocorticoid receptor binding|sequence-specific DNA binding transcription factor activity			ovary(3)|lung(2)|skin(1)	6		all_cancers(22;4.15e-07)|all_epithelial(22;2.83e-05)|Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.135)	Dasatinib(DB01254)	CCACTGGGATAAATAATGCCG	0.428													27	16					0	0	0.008361	0	0
ATP6V0A1	535	broad.mit.edu	37	17	40630587	40630587	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:40630587C>T	uc002hzr.2	+	7	780	c.613C>T	c.(613-615)CCC>TCC	p.P205S	ATP6V0A1_uc002hzq.2_Missense_Mutation_p.P205S|ATP6V0A1_uc002hzs.2_Missense_Mutation_p.P212S|ATP6V0A1_uc010wgj.1_Missense_Mutation_p.P162S|ATP6V0A1_uc010wgk.1_Missense_Mutation_p.P162S|ATP6V0A1_uc010cyg.2_Intron|ATP6V0A1_uc010wgl.1_Missense_Mutation_p.P64S	NM_001130021	NP_001123493	Q93050	VPP1_HUMAN	ATPase, H+ transporting, lysosomal V0 subunit a1	205	Cytoplasmic (Potential).				ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	cytoplasmic vesicle membrane|endosome membrane|Golgi apparatus|integral to membrane|melanosome|nucleus|plasma membrane|proton-transporting two-sector ATPase complex, proton-transporting domain	ATPase binding|hydrogen ion transmembrane transporter activity			pancreas(1)	1		all_cancers(22;1.18e-05)|Breast(137;0.000105)|all_epithelial(22;0.000254)		BRCA - Breast invasive adenocarcinoma(366;0.137)		AATCGAGAACCCCCTGGAGGA	0.552													16	20					0	0	0.006122	0	0
AOC3	8639	broad.mit.edu	37	17	41008478	41008478	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:41008478G>A	uc002ibv.2	+	4	2363	c.2203G>A	c.(2203-2205)GAG>AAG	p.E735K		NM_003734	NP_003725	Q16853	AOC3_HUMAN	amine oxidase, copper containing 3 precursor	735	Extracellular (Potential).				amine metabolic process|cell adhesion|inflammatory response	cell surface|integral to membrane|plasma membrane	aliphatic-amine oxidase activity|aminoacetone:oxygen oxidoreductase(deaminating) activity|copper ion binding|phenethylamine:oxygen oxidoreductase (deaminating) activity|primary amine oxidase activity|protein homodimerization activity|quinone binding|tryptamine:oxygen oxidoreductase (deaminating) activity			central_nervous_system(2)|ovary(1)|skin(1)	4		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.156)	Hydralazine(DB01275)|Phenelzine(DB00780)	TGGGGCCTGCGAGGTCAACCC	0.632													7	10					0	0	0.001855	0	0
RUNDC3A	10900	broad.mit.edu	37	17	42389994	42389994	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:42389994G>A	uc002igl.3	+	2	428	c.154G>A	c.(154-156)GAT>AAT	p.D52N	RUNDC3A_uc002igi.2_Missense_Mutation_p.D52N|RUNDC3A_uc002igj.2_Missense_Mutation_p.D52N|RUNDC3A_uc002igk.2_Missense_Mutation_p.D52N	NM_001144825	NP_001138297	Q59EK9	RUN3A_HUMAN	RUN domain containing 3A isoform 1	52	Interaction with RAP2A (By similarity).|RUN.				small GTPase mediated signal transduction		small GTPase regulator activity				0		Prostate(33;0.0233)		BRCA - Breast invasive adenocarcinoma(366;0.189)		GGAGCCCATCGATGACTCATC	0.597													5	2					0	0	0.001984	0	0
GJC1	10052	broad.mit.edu	37	17	42882180	42882180	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:42882180C>T	uc002ihj.2	-	2	1517	c.1006G>A	c.(1006-1008)GAG>AAG	p.E336K	GJC1_uc002ihk.2_Missense_Mutation_p.E336K|GJC1_uc002ihl.2_Missense_Mutation_p.E336K|GJC1_uc010czx.2_Missense_Mutation_p.E336K|GJC1_uc010czy.1_Missense_Mutation_p.E197K	NM_005497	NP_005488	P36383	CXG1_HUMAN	connexin 45	336	Cytoplasmic (Potential).				cellular membrane organization|gap junction assembly|muscle contraction|synaptic transmission|transport	connexon complex|integral to membrane					0		Prostate(33;0.0959)				TGCAGAGCCTCCAGGTCAGCT	0.557													63	27					0	0	0.014410	0	0
FMNL1	752	broad.mit.edu	37	17	43311019	43311019	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:43311019G>A	uc002iin.2	+	5	606	c.406G>A	c.(406-408)GTG>ATG	p.V136M	FMNL1_uc002iio.2_Missense_Mutation_p.V81M|FMNL1_uc002iip.1_Missense_Mutation_p.V130M	NM_005892	NP_005883	O95466	FMNL_HUMAN	formin-like 1	136	GBD/FH3.				actin cytoskeleton organization		actin binding|Rho GTPase binding			pancreas(1)	1						CCACAGGTGGGTGCAGGAGTT	0.627													32	22					0	0	0.005524	0	0
FMNL1	752	broad.mit.edu	37	17	43321365	43321365	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:43321365C>T	uc002iin.2	+	18	2621	c.2421C>T	c.(2419-2421)TTC>TTT	p.F807F	FMNL1_uc002iiq.2_Silent_p.F385F|FMNL1_uc010dag.2_RNA	NM_005892	NP_005883	O95466	FMNL_HUMAN	formin-like 1	807	FH2.				actin cytoskeleton organization		actin binding|Rho GTPase binding			pancreas(1)	1						TGGGCAACTTCCCGGACACAG	0.667													46	25					0	0	0.014410	0	0
ARHGAP27	201176	broad.mit.edu	37	17	43474338	43474338	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:43474338G>A	uc002iix.2	-	11	1321	c.872C>T	c.(871-873)TCG>TTG	p.S291L	ARHGAP27_uc010dak.2_Missense_Mutation_p.S264L	NM_199282	NP_954976	Q6ZUM4	RHG27_HUMAN	Rho GTPase activating protein 27 isoform a	632					positive regulation of Cdc42 GTPase activity|receptor-mediated endocytosis|signal transduction	cytoplasm|membrane	Rac GTPase activator activity|SH3 domain binding				0	Renal(3;0.0405)					GCGCTCGCTCGACCCGAAGTC	0.667													45	23					0	0	0.014410	0	0
MAPT	4137	broad.mit.edu	37	17	44060909	44060909	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:44060909C>T	uc002ijr.3	+	6	1059	c.739C>T	c.(739-741)CAG>TAG	p.Q247*	MAPT_uc010dau.2_Nonsense_Mutation_p.Q247*|MAPT_uc002ijs.3_Intron|MAPT_uc002ijx.3_Intron|MAPT_uc002ijt.3_Intron|MAPT_uc002iju.3_Intron|MAPT_uc002ijv.3_Intron	NM_016835	NP_058519	P10636	TAU_HUMAN	microtubule-associated protein tau isoform 1	247					cellular component disassembly involved in apoptosis|microtubule cytoskeleton organization|negative regulation of microtubule depolymerization|positive regulation of axon extension|positive regulation of microtubule polymerization|regulation of autophagy	axon|cytosol|growth cone|microtubule|microtubule associated complex|nuclear periphery|plasma membrane|tubulin complex	apolipoprotein E binding|enzyme binding|identical protein binding|lipoprotein particle binding|microtubule binding|protein binding|SH3 domain binding|structural constituent of cytoskeleton			pancreas(1)	1		Melanoma(429;0.216)				GCGGCCTCCCCAGACAGCCGC	0.642													17	9					0	0	0.007413	0	0
ITGB3	3690	broad.mit.edu	37	17	45376679	45376679	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:45376679G>A	uc002ilj.2	+	11	1716	c.1696G>A	c.(1696-1698)GGC>AGC	p.G566S	ITGB3_uc010wkr.1_RNA	NM_000212	NP_000203	P05106	ITB3_HUMAN	integrin beta chain, beta 3 precursor	566	Extracellular (Potential).|III.|Cysteine-rich tandem repeats.				activation of protein kinase activity|angiogenesis involved in wound healing|axon guidance|cell-matrix adhesion|integrin-mediated signaling pathway|interspecies interaction between organisms|leukocyte migration|negative regulation of lipid storage|negative regulation of lipid transport|negative regulation of lipoprotein metabolic process|negative regulation of low-density lipoprotein particle receptor biosynthetic process|negative regulation of macrophage derived foam cell differentiation|platelet activation|platelet degranulation|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of vascular endothelial growth factor receptor signaling pathway|regulation of bone resorption|smooth muscle cell migration|tube development	alphav-beta3 integrin-vitronectin complex|integrin complex|platelet alpha granule membrane	cell adhesion molecule binding|identical protein binding|platelet-derived growth factor receptor binding|receptor activity|vascular endothelial growth factor receptor 2 binding			central_nervous_system(5)|large_intestine(1)	6					Abciximab(DB00054)|Tirofiban(DB00775)	TTCAGGCCATGGCCAGTGCAG	0.607													35	21					0	0	0.003755	0	0
C17orf57	124989	broad.mit.edu	37	17	45422425	45422425	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:45422425G>A	uc002iln.2	+	8	889	c.478G>A	c.(478-480)GAA>AAA	p.E160K	C17orf57_uc002ilm.2_Missense_Mutation_p.E160K|C17orf57_uc002ill.1_Missense_Mutation_p.E12K|C17orf57_uc010daz.1_Missense_Mutation_p.E160K	NM_152347	NP_689560	Q8IY85	CQ057_HUMAN	hypothetical protein LOC124989	160							calcium ion binding			breast(1)|central_nervous_system(1)|skin(1)	3						ATTATATGATGAAGTAACCCA	0.318													71	49					0	0	0.014410	0	0
C17orf57	124989	broad.mit.edu	37	17	45473267	45473267	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:45473267G>A	uc002iln.2	+	17	2280	c.1869G>A	c.(1867-1869)TGG>TGA	p.W623*	C17orf57_uc002ilm.2_Nonsense_Mutation_p.W527*	NM_152347	NP_689560	Q8IY85	CQ057_HUMAN	hypothetical protein LOC124989	623							calcium ion binding			breast(1)|central_nervous_system(1)|skin(1)	3						CTGACCTGTGGAATACTCTGT	0.358													18	33					0	0	0.006122	0	0
CDK5RAP3	80279	broad.mit.edu	37	17	46052592	46052592	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:46052592C>T	uc002imr.2	+	6	486	c.402C>T	c.(400-402)GCC>GCT	p.A134A	CDK5RAP3_uc010wlc.1_Silent_p.A154A|CDK5RAP3_uc002imq.1_5'UTR|CDK5RAP3_uc002imu.2_5'UTR|CDK5RAP3_uc002ims.2_Silent_p.A47A|CDK5RAP3_uc002imv.2_5'UTR|CDK5RAP3_uc002imw.2_5'UTR|CDK5RAP3_uc002imx.2_5'UTR	NM_176096	NP_788276	Q96JB5	CK5P3_HUMAN	CDK5 regulatory subunit associated protein 3	134					brain development|regulation of cyclin-dependent protein kinase activity|regulation of neuron differentiation		neuronal Cdc2-like kinase binding				0						AGCAGATTGCCAAGTGCCAGC	0.562													56	33					0	0	0.014410	0	0
SKAP1	8631	broad.mit.edu	37	17	46262129	46262129	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:46262129C>T	uc002ini.1	-	7	635	c.523G>A	c.(523-525)GAA>AAA	p.E175K	SKAP1_uc002inj.1_Missense_Mutation_p.E175K|SKAP1_uc010dbd.1_Missense_Mutation_p.E81K|SKAP1_uc010dbe.1_Missense_Mutation_p.E175K	NM_003726	NP_003717	Q86WV1	SKAP1_HUMAN	src kinase associated phosphoprotein 1 isoform	175	PH.				positive regulation of transcription from RNA polymerase II promoter|T cell receptor signaling pathway	cytoplasm|nucleus|plasma membrane	antigen binding|protein kinase binding|SH2 domain binding				0						AAGCAGGATTCTTTCTTGGAA	0.527													115	53					0	0	0.014410	0	0
HOXB7	3217	broad.mit.edu	37	17	46688173	46688173	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:46688173G>A	uc002inv.2	-	1	211	c.108C>T	c.(106-108)TCC>TCT	p.S36S		NM_004502	NP_004493	P09629	HXB7_HUMAN	homeobox B7	36						nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						GCTGGGGGTTGGAAGCAAACG	0.582													7	21					0	0	0.003080	0	0
HOXB13	10481	broad.mit.edu	37	17	46804307	46804308	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:46804307_46804308CC>TT	uc002ioa.2	-	2	855_856	c.699_700GG>AA	c.(697-702)CGGGAG>CGAAAG	p.E234K	hsa-mir-3185|MI0014227_5'Flank	NM_006361	NP_006352	Q92826	HXB13_HUMAN	homeobox B13	234	Homeobox.				angiogenesis|epidermis development|response to wounding		sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						GCCGCATACTCCCGCTCCAGCT	0.614													48	25					0	0	0.004672	0	0
MYCBPAP	84073	broad.mit.edu	37	17	48585988	48585988	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:48585988C>T	uc010wmr.1	+	1	244	c.82C>T	c.(82-84)CTC>TTC	p.L28F	MYCBPAP_uc002iqx.2_Missense_Mutation_p.L28F|MYCBPAP_uc002iqz.2_RNA	NM_032133	NP_115509	Q8TBZ2	MYBPP_HUMAN	Myc-binding protein-associated protein	Error:Variant_position_missing_in_Q8TBZ2_after_alignment					cell differentiation|multicellular organismal development|spermatogenesis|synaptic transmission	cytoplasm|membrane	protein binding			urinary_tract(2)|skin(2)|ovary(1)|pancreas(1)	6	Breast(11;1.23e-18)		BRCA - Breast invasive adenocarcinoma(22;1.23e-09)			GCCTCGGTGTCTCTGGGCCGG	0.657													4	1					0	0	0.009096	0	0
MYCBPAP	84073	broad.mit.edu	37	17	48585991	48585991	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:48585991T>C	uc010wmr.1	+	1	247	c.85T>C	c.(85-87)TGG>CGG	p.W29R	MYCBPAP_uc002iqx.2_Missense_Mutation_p.W29R|MYCBPAP_uc002iqz.2_RNA	NM_032133	NP_115509	Q8TBZ2	MYBPP_HUMAN	Myc-binding protein-associated protein	Error:Variant_position_missing_in_Q8TBZ2_after_alignment					cell differentiation|multicellular organismal development|spermatogenesis|synaptic transmission	cytoplasm|membrane	protein binding			urinary_tract(2)|skin(2)|ovary(1)|pancreas(1)	6	Breast(11;1.23e-18)		BRCA - Breast invasive adenocarcinoma(22;1.23e-09)			TCGGTGTCTCTGGGCCGGCGG	0.647													4	1					0	0	0.009096	0	0
MYCBPAP	84073	broad.mit.edu	37	17	48594704	48594704	+	Silent	SNP	G	A	A	rs79000284		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:48594704G>A	uc010wmr.1	+	3	546	c.384G>A	c.(382-384)CAG>CAA	p.Q128Q	MYCBPAP_uc002iqx.2_Silent_p.Q128Q|MYCBPAP_uc002iqz.2_RNA	NM_032133	NP_115509	Q8TBZ2	MYBPP_HUMAN	Myc-binding protein-associated protein	91					cell differentiation|multicellular organismal development|spermatogenesis|synaptic transmission	cytoplasm|membrane	protein binding			urinary_tract(2)|skin(2)|ovary(1)|pancreas(1)	6	Breast(11;1.23e-18)		BRCA - Breast invasive adenocarcinoma(22;1.23e-09)			TCATCACCCAGAAATTTATCA	0.458													58	33					0	0	0.014410	0	0
CACNA1G	8913	broad.mit.edu	37	17	48646258	48646258	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:48646258C>T	uc002irk.1	+	2	642	c.270C>T	c.(268-270)GTC>GTT	p.V90V	CACNA1G_uc002iri.1_Silent_p.V90V|CACNA1G_uc002irj.1_Silent_p.V90V|CACNA1G_uc002irl.1_Silent_p.V90V|CACNA1G_uc002irm.1_Silent_p.V90V|CACNA1G_uc002irn.1_Silent_p.V90V|CACNA1G_uc002iro.1_Silent_p.V90V|CACNA1G_uc002irp.1_Silent_p.V90V|CACNA1G_uc002irq.1_Silent_p.V90V|CACNA1G_uc002irr.1_Silent_p.V90V|CACNA1G_uc002irs.1_Silent_p.V90V|CACNA1G_uc002irt.1_Silent_p.V90V|CACNA1G_uc002irv.1_Silent_p.V90V|CACNA1G_uc002irw.1_Silent_p.V90V|CACNA1G_uc002iru.1_Silent_p.V90V|CACNA1G_uc002irx.1_Silent_p.V3V|CACNA1G_uc002iry.1_Silent_p.V3V|CACNA1G_uc002irz.1_Silent_p.V3V|CACNA1G_uc002isa.1_Silent_p.V3V|CACNA1G_uc002isb.1_Silent_p.V3V|CACNA1G_uc002isc.1_Silent_p.V3V|CACNA1G_uc002isd.1_Silent_p.V3V|CACNA1G_uc002ise.1_Silent_p.V3V|CACNA1G_uc002isf.1_Silent_p.V3V|CACNA1G_uc002isg.1_Silent_p.V3V|CACNA1G_uc002ish.1_Silent_p.V3V|CACNA1G_uc002isi.1_Silent_p.V3V	NM_018896	NP_061496	O43497	CAC1G_HUMAN	voltage-dependent calcium channel alpha 1G	90	Helical; Name=S1 of repeat I; (Potential).|I.				axon guidance	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(1)	1	Breast(11;6.7e-17)		BRCA - Breast invasive adenocarcinoma(22;7.52e-09)		Ethosuximide(DB00593)|Flunarizine(DB04841)|Levetiracetam(DB01202)|Mibefradil(DB01388)|Pimozide(DB01100)|Trimethadione(DB00347)|Verapamil(DB00661)|Zonisamide(DB00909)	GCATGTTGGTCATCCTTCTCA	0.582													24	14					0	0	0.005443	0	0
CACNA1G	8913	broad.mit.edu	37	17	48649321	48649321	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:48649321C>T	uc002irk.1	+	5	1041	c.669C>T	c.(667-669)TTC>TTT	p.F223F	CACNA1G_uc002iri.1_Silent_p.F223F|CACNA1G_uc002irj.1_Silent_p.F223F|CACNA1G_uc002irl.1_Silent_p.F223F|CACNA1G_uc002irm.1_Silent_p.F223F|CACNA1G_uc002irn.1_Silent_p.F223F|CACNA1G_uc002iro.1_Silent_p.F223F|CACNA1G_uc002irp.1_Silent_p.F223F|CACNA1G_uc002irq.1_Silent_p.F223F|CACNA1G_uc002irr.1_Silent_p.F223F|CACNA1G_uc002irs.1_Silent_p.F223F|CACNA1G_uc002irt.1_Silent_p.F223F|CACNA1G_uc002irv.1_Silent_p.F223F|CACNA1G_uc002irw.1_Silent_p.F223F|CACNA1G_uc002iru.1_Silent_p.F223F|CACNA1G_uc002irx.1_Silent_p.F136F|CACNA1G_uc002iry.1_Silent_p.F136F|CACNA1G_uc002irz.1_Silent_p.F136F|CACNA1G_uc002isa.1_Silent_p.F136F|CACNA1G_uc002isb.1_Silent_p.F136F|CACNA1G_uc002isc.1_Silent_p.F136F|CACNA1G_uc002isd.1_Silent_p.F136F|CACNA1G_uc002ise.1_Silent_p.F136F|CACNA1G_uc002isf.1_Silent_p.F136F|CACNA1G_uc002isg.1_Silent_p.F136F|CACNA1G_uc002ish.1_Silent_p.F136F|CACNA1G_uc002isi.1_Silent_p.F136F	NM_018896	NP_061496	O43497	CAC1G_HUMAN	voltage-dependent calcium channel alpha 1G	223	I.|Helical; Name=S5 of repeat I; (Potential).				axon guidance	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(1)	1	Breast(11;6.7e-17)		BRCA - Breast invasive adenocarcinoma(22;7.52e-09)		Ethosuximide(DB00593)|Flunarizine(DB04841)|Levetiracetam(DB01202)|Mibefradil(DB01388)|Pimozide(DB01100)|Trimethadione(DB00347)|Verapamil(DB00661)|Zonisamide(DB00909)	TCGTCTTCTTCATCTTCGGCA	0.597													38	28					0	0	0.009718	0	0
CACNA1G	8913	broad.mit.edu	37	17	48678466	48678466	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:48678466C>T	uc002irk.1	+	19	4218	c.3846C>T	c.(3844-3846)GTC>GTT	p.V1282V	CACNA1G_uc002iri.1_Silent_p.V1282V|CACNA1G_uc002irj.1_Silent_p.V1259V|CACNA1G_uc002irl.1_Silent_p.V1259V|CACNA1G_uc002irm.1_Silent_p.V1259V|CACNA1G_uc002irn.1_Silent_p.V1259V|CACNA1G_uc002iro.1_Silent_p.V1259V|CACNA1G_uc002irp.1_Silent_p.V1282V|CACNA1G_uc002irq.1_Silent_p.V1259V|CACNA1G_uc002irr.1_Silent_p.V1282V|CACNA1G_uc002irs.1_Silent_p.V1282V|CACNA1G_uc002irt.1_Silent_p.V1282V|CACNA1G_uc002irv.1_Silent_p.V1282V|CACNA1G_uc002irw.1_Silent_p.V1259V|CACNA1G_uc002iru.1_Silent_p.V1259V|CACNA1G_uc002irx.1_Silent_p.V1195V|CACNA1G_uc002iry.1_Silent_p.V1195V|CACNA1G_uc002irz.1_Silent_p.V1195V|CACNA1G_uc002isa.1_Silent_p.V1195V|CACNA1G_uc002isb.1_Silent_p.V1195V|CACNA1G_uc002isc.1_Silent_p.V1195V|CACNA1G_uc002isd.1_Silent_p.V1195V|CACNA1G_uc002ise.1_Silent_p.V1195V|CACNA1G_uc002isf.1_Silent_p.V1195V|CACNA1G_uc002isg.1_Silent_p.V1195V|CACNA1G_uc002ish.1_Silent_p.V1195V|CACNA1G_uc002isi.1_Silent_p.V1172V|CACNA1G_uc002isj.2_Silent_p.V6V	NM_018896	NP_061496	O43497	CAC1G_HUMAN	voltage-dependent calcium channel alpha 1G	1282	III.|Helical; Name=S1 of repeat III; (Potential).				axon guidance	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(1)	1	Breast(11;6.7e-17)		BRCA - Breast invasive adenocarcinoma(22;7.52e-09)		Ethosuximide(DB00593)|Flunarizine(DB04841)|Levetiracetam(DB01202)|Mibefradil(DB01388)|Pimozide(DB01100)|Trimethadione(DB00347)|Verapamil(DB00661)|Zonisamide(DB00909)	ACCACGTGGTCCTTGTCATCA	0.617													60	21					0	0	0.014410	0	0
CACNA1G	8913	broad.mit.edu	37	17	48697080	48697080	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:48697080C>T	uc002irk.1	+	34	6190	c.5818C>T	c.(5818-5820)CAG>TAG	p.Q1940*	CACNA1G_uc002irj.1_Intron|CACNA1G_uc002irl.1_Intron|CACNA1G_uc002irm.1_Nonsense_Mutation_p.Q1906*|CACNA1G_uc002irn.1_Intron|CACNA1G_uc002iro.1_Intron|CACNA1G_uc002irp.1_Nonsense_Mutation_p.Q1940*|CACNA1G_uc002irq.1_Nonsense_Mutation_p.Q1917*|CACNA1G_uc002irr.1_Intron|CACNA1G_uc002irs.1_Nonsense_Mutation_p.Q1929*|CACNA1G_uc002irt.1_Intron|CACNA1G_uc002irv.1_Intron|CACNA1G_uc002irw.1_Intron|CACNA1G_uc002iru.1_Nonsense_Mutation_p.Q1906*|CACNA1G_uc002irx.1_Intron|CACNA1G_uc002iry.1_Intron|CACNA1G_uc002irz.1_Intron|CACNA1G_uc002isa.1_Intron|CACNA1G_uc002isb.1_Intron|CACNA1G_uc002isc.1_Nonsense_Mutation_p.Q1842*|CACNA1G_uc002isd.1_Intron|CACNA1G_uc002ise.1_Nonsense_Mutation_p.Q1808*|CACNA1G_uc002isf.1_Nonsense_Mutation_p.Q1835*|CACNA1G_uc002isg.1_Intron|CACNA1G_uc002ish.1_Intron|CACNA1G_uc002isi.1_Intron	NM_018896	NP_061496	O43497	CAC1G_HUMAN	voltage-dependent calcium channel alpha 1G	1940	Cytoplasmic (Potential).				axon guidance	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(1)	1	Breast(11;6.7e-17)		BRCA - Breast invasive adenocarcinoma(22;7.52e-09)		Ethosuximide(DB00593)|Flunarizine(DB04841)|Levetiracetam(DB01202)|Mibefradil(DB01388)|Pimozide(DB01100)|Trimethadione(DB00347)|Verapamil(DB00661)|Zonisamide(DB00909)	CCTGCTGATCCAGGGCTCCCT	0.672													12	7					0	0	0.013537	0	0
ABCC3	8714	broad.mit.edu	37	17	48735493	48735493	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:48735493C>T	uc002isl.2	+	5	617	c.537C>T	c.(535-537)GCC>GCT	p.A179A	ABCC3_uc002isk.3_Silent_p.A179A	NM_003786	NP_003777	O15438	MRP3_HUMAN	ATP-binding cassette, sub-family C, member 3	179	Helical; Name=5; (By similarity).				bile acid metabolic process	integral to plasma membrane|membrane fraction	ATP binding|bile acid-exporting ATPase activity|organic anion transmembrane transporter activity			skin(3)|central_nervous_system(1)	4			BRCA - Breast invasive adenocarcinoma(22;3.05e-09)		Glibenclamide(DB01016)	TCCACTTTGCCCTGGTACTCT	0.572													51	32					0	0	0.014410	0	0
WFIKKN2	124857	broad.mit.edu	37	17	48916900	48916900	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:48916900G>A	uc002isv.3	+	2	945	c.251G>A	c.(250-252)GGG>GAG	p.G84E	WFIKKN2_uc010dbu.2_5'UTR	NM_175575	NP_783165	Q8TEU8	WFKN2_HUMAN	WFIKKN2 protein	84	WAP.					extracellular region	metalloendopeptidase inhibitor activity|protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|skin(1)	3			BRCA - Breast invasive adenocarcinoma(22;1.09e-08)			AACGTATGTGGGACCAAGAGC	0.582													17	12					0	0	0.007413	0	0
CA10	56934	broad.mit.edu	37	17	50008440	50008440	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:50008440C>T	uc002itw.3	-	3	1175	c.189G>A	c.(187-189)GGG>GGA	p.G63G	CA10_uc002itv.3_Silent_p.G69G|CA10_uc002itx.3_Silent_p.G63G|CA10_uc002ity.3_Silent_p.G63G|CA10_uc002itz.2_Silent_p.G63G	NM_020178	NP_064563	Q9NS85	CAH10_HUMAN	carbonic anhydrase X	63					brain development					ovary(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(22;4.74e-06)			ACTGCCGTTTCCCCACAGAGC	0.493													106	58					0	0	0.014410	0	0
KIF2B	84643	broad.mit.edu	37	17	51901025	51901025	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:51901025G>A	uc002iua.2	+	1	787	c.631G>A	c.(631-633)GAA>AAA	p.E211K	uc010wna.1_RNA	NM_032559	NP_115948	Q8N4N8	KIF2B_HUMAN	kinesin family member 2B	211	Kinesin-motor.				blood coagulation|cell division|microtubule depolymerization|microtubule-based movement|mitotic prometaphase|regulation of chromosome segregation	condensed chromosome kinetochore|cytosol|microtubule|microtubule organizing center|nucleolus|spindle	ATP binding|microtubule motor activity			ovary(5)|skin(3)	8						GCCCCCGCAAGAACATCGCAT	0.537													15	17					0	0	0.003163	0	0
NOG	9241	broad.mit.edu	37	17	54671853	54671853	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:54671853G>A	uc002iup.2	+	1	794	c.269G>A	c.(268-270)GGG>GAG	p.G90E		NM_005450	NP_005441	Q13253	NOGG_HUMAN	noggin precursor	90					BMP signaling pathway|cartilage development|cell differentiation in hindbrain|dorsal/ventral pattern formation|embryonic digit morphogenesis|embryonic skeletal joint morphogenesis|epithelial to mesenchymal transition|fibroblast growth factor receptor signaling pathway involved in neural plate anterior/posterior pattern formation|middle ear morphogenesis|negative regulation of astrocyte differentiation|negative regulation of BMP signaling pathway|negative regulation of cardiac muscle cell proliferation|negative regulation of cell migration|negative regulation of cytokine activity|negative regulation of osteoblast differentiation|osteoblast differentiation|positive regulation of branching involved in ureteric bud morphogenesis|positive regulation of glomerulus development|somatic stem cell maintenance|wound healing	extracellular space	cytokine binding|protein homodimerization activity				0	Breast(9;5.24e-08)					cggcccggcgggggcgggggT	0.617													14	14					0	0	0.002450	0	0
EPX	8288	broad.mit.edu	37	17	56271404	56271404	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:56271404C>T	uc002ivq.2	+	5	631	c.545C>T	c.(544-546)CCC>CTC	p.P182L		NM_000502	NP_000493	P11678	PERE_HUMAN	eosinophil peroxidase preproprotein	182					hydrogen peroxide catabolic process		heme binding|peroxidase activity|protein binding			ovary(2)	2						CTGTCGCTCCCCTTCGGCTGG	0.597													20	4					0	0	0.010504	0	0
LPO	4025	broad.mit.edu	37	17	56320356	56320356	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:56320356C>T	uc002ivt.2	+	2	332	c.16C>T	c.(16-18)CAT>TAT	p.H6Y	LPO_uc010dco.2_Missense_Mutation_p.H6Y|LPO_uc010wnr.1_Missense_Mutation_p.H6Y|LPO_uc010wns.1_5'UTR|LPO_uc010dcp.2_Missense_Mutation_p.H6Y	NM_006151	NP_006142	P22079	PERL_HUMAN	lactoperoxidase isoform 1 preproprotein	6					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|breast(1)	2						GGTCCTTCTCCATCTCCCAGC	0.483													116	72					0	0	0.014410	0	0
PPM1E	22843	broad.mit.edu	37	17	57058257	57058257	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:57058257G>A	uc002iwx.2	+	7	2260	c.2133G>A	c.(2131-2133)GGG>GGA	p.G711G	PPM1E_uc010ddd.2_Silent_p.G474G	NM_014906	NP_055721	Q8WY54	PPM1E_HUMAN	protein phosphatase 1E	720					protein dephosphorylation	cytoplasm|nucleolus|protein serine/threonine phosphatase complex	metal ion binding|protein serine/threonine phosphatase activity			breast(3)|lung(1)|skin(1)	5	Medulloblastoma(34;0.127)|all_neural(34;0.237)		BRCA - Breast invasive adenocarcinoma(1;5.76e-11)			CTGGAAGTGGGAAGAGAAATA	0.418													39	14					0	0	0.006230	0	0
TRIM37	4591	broad.mit.edu	37	17	57134354	57134354	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:57134354G>A	uc002iwy.3	-	13	1525	c.1081C>T	c.(1081-1083)CGA>TGA	p.R361*	TRIM37_uc002iwz.3_Nonsense_Mutation_p.R361*|TRIM37_uc002ixa.3_Nonsense_Mutation_p.R239*|TRIM37_uc010woc.1_Nonsense_Mutation_p.R327*	NM_001005207	NP_001005207	O94972	TRI37_HUMAN	tripartite motif-containing 37 protein	361	MATH.					perinuclear region of cytoplasm|peroxisome	ligase activity|protein binding|zinc ion binding			lung(2)|pancreas(2)|ovary(1)|skin(1)|breast(1)	7	Medulloblastoma(34;0.0922)|all_neural(34;0.101)					GCAAATTCTCGAATGATATTT	0.343									Mulibrey_Nanism				22	14					0	0	0.014323	0	0
TBC1D3P2	440452	broad.mit.edu	37	17	60348291	60348291	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:60348291G>A	uc002izq.2	-	7	596	c.484C>T	c.(484-486)CGA>TGA	p.R162*	TBC1D3P2_uc010woz.1_Intron|uc010wpa.1_5'Flank					SubName: Full=Putative uncharacterized protein TBC1D3E;												0						GTTCCGTATCGATCCCTGAAG	0.547													83	59					0	0	0.014410	0	0
MARCH10	162333	broad.mit.edu	37	17	60814506	60814506	+	Silent	SNP	T	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:60814506T>A	uc010ddr.2	-	6	961	c.723A>T	c.(721-723)GGA>GGT	p.G241G	MARCH10_uc002jag.3_Silent_p.G241G|MARCH10_uc010dds.2_Silent_p.G279G|MARCH10_uc002jah.2_Silent_p.G240G|uc002jaj.1_RNA|uc002jak.2_RNA	NM_001100875	NP_001094345	Q8NA82	MARHA_HUMAN	ring finger protein 190	241							ligase activity|zinc ion binding				0						GACTATTTTTTCCTTGGAAGG	0.532													90	31					0	0	0.014410	0	0
MARCH10	162333	broad.mit.edu	37	17	60879061	60879061	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:60879061G>A	uc010ddr.2	-	2	274	c.36C>T	c.(34-36)TTC>TTT	p.F12F	MARCH10_uc002jag.3_Silent_p.F12F|MARCH10_uc010dds.2_Silent_p.F12F|MARCH10_uc002jah.2_Silent_p.F12F	NM_001100875	NP_001094345	Q8NA82	MARHA_HUMAN	ring finger protein 190	12							ligase activity|zinc ion binding				0						GAACATCGCTGAAGAACTTCT	0.453													81	30					0	0	0.014410	0	0
ACE	1636	broad.mit.edu	37	17	61564035	61564035	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:61564035G>A	uc002jau.1	+	14	2198	c.2176G>A	c.(2176-2178)GAC>AAC	p.D726N	ACE_uc002jav.1_Missense_Mutation_p.D152N|ACE_uc010ddv.1_5'UTR|ACE_uc010wpj.1_Missense_Mutation_p.D152N|ACE_uc002jaw.1_RNA|ACE_uc010wpk.1_Missense_Mutation_p.D36N	NM_000789	NP_000780	P12821	ACE_HUMAN	angiotensin I converting enzyme 1 isoform 1	726	Extracellular (Potential).|Peptidase M2 2.				arachidonic acid secretion|hormone catabolic process|kidney development|peptide catabolic process|regulation of smooth muscle cell migration	endosome|external side of plasma membrane|extracellular space|integral to membrane|membrane fraction|plasma membrane	actin binding|bradykinin receptor binding|carboxypeptidase activity|chloride ion binding|drug binding|metallopeptidase activity|peptidyl-dipeptidase activity|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4					Benazepril(DB00542)|Captopril(DB01197)|Deserpidine(DB01089)|Enalapril(DB00584)|Fosinopril(DB00492)|Lisinopril(DB00722)|Moexipril(DB00691)|Perindopril(DB00790)|Quinapril(DB00881)|Ramipril(DB00178)|Rescinnamine(DB01180)|Spirapril(DB01348)|Trandolapril(DB00519)	GAAGGTTCAGGACCTAGAACG	0.567													23	11					0	0	0.004656	0	0
KCNH6	81033	broad.mit.edu	37	17	61611507	61611507	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:61611507C>T	uc002jay.2	+	5	1016	c.936C>T	c.(934-936)GTC>GTT	p.V312V	KCNH6_uc002jax.1_Silent_p.V312V|KCNH6_uc010wpl.1_Silent_p.V189V|KCNH6_uc010wpm.1_Silent_p.V312V|KCNH6_uc002jaz.1_Silent_p.V312V	NM_030779	NP_110406	Q9H252	KCNH6_HUMAN	potassium voltage-gated channel, subfamily H,	312	Helical; Name=Segment S2; (Potential).				regulation of transcription, DNA-dependent|signal transduction					skin(1)	1					Ibutilide(DB00308)	TCATGTTCGTCGTGGACATCG	0.582													22	157					0	0	0.003954	0	0
KCNH6	81033	broad.mit.edu	37	17	61623248	61623248	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:61623248G>A	uc002jay.2	+	14	3050	c.2970G>A	c.(2968-2970)GGG>GGA	p.G990G	KCNH6_uc010wpl.1_Silent_p.G831G|KCNH6_uc010wpm.1_Silent_p.G954G|KCNH6_uc002jaz.1_Silent_p.G901G	NM_030779	NP_110406	Q9H252	KCNH6_HUMAN	potassium voltage-gated channel, subfamily H,	990	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent|signal transduction					skin(1)	1					Ibutilide(DB00308)	GATTTGCAGGGAGTTGGGGCC	0.502													30	16					0	0	0.012213	0	0
GH2	2689	broad.mit.edu	37	17	61958450	61958450	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:61958450G>A	uc002jco.1	-	3	292	c.230C>T	c.(229-231)TCC>TTC	p.S77F	GH2_uc002jcj.2_Missense_Mutation_p.S77F|CSH2_uc002jck.2_Intron|GH2_uc002jcl.1_Missense_Mutation_p.S77F|GH2_uc002jcm.1_Missense_Mutation_p.S77F|GH2_uc002jcn.1_Missense_Mutation_p.S62F	NM_002059	NP_002050	P01242	SOM2_HUMAN	growth hormone 2 isoform 1	77						extracellular region	hormone activity			upper_aerodigestive_tract(2)|pancreas(1)	3						GAAGCAGAGGGAGGTCTGGGG	0.532													77	125					0	0	0.014410	0	0
SMURF2	64750	broad.mit.edu	37	17	62557655	62557655	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:62557655G>A	uc002jep.1	-	12	1667	c.1279C>T	c.(1279-1281)CGT>TGT	p.R427C	SMURF2_uc002jeq.1_Missense_Mutation_p.R186C|SMURF2_uc002jer.1_Missense_Mutation_p.R186C	NM_022739	NP_073576	Q9HAU4	SMUF2_HUMAN	SMAD specific E3 ubiquitin protein ligase 2	427	HECT.				BMP signaling pathway|negative regulation of transcription, DNA-dependent|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|regulation of transforming growth factor beta receptor signaling pathway|transforming growth factor beta receptor signaling pathway|ubiquitin-dependent SMAD protein catabolic process	cytosol|membrane raft|nucleus|plasma membrane|ubiquitin ligase complex	identical protein binding|SMAD binding|ubiquitin-protein ligase activity			skin(3)|lung(1)	4	Breast(5;1.32e-14)		BRCA - Breast invasive adenocarcinoma(8;9.88e-12)			TCTTCTCCACGAAATTTTATC	0.363													14	11					0	0	0.004007	0	0
CACNG1	786	broad.mit.edu	37	17	65050168	65050168	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:65050168G>A	uc002jfu.2	+	2	357	c.286G>A	c.(286-288)GAA>AAA	p.E96K		NM_000727	NP_000718	Q06432	CCG1_HUMAN	voltage-dependent calcium channel gamma-1	96					muscle contraction	voltage-gated calcium channel complex	voltage-gated calcium channel activity				0	all_cancers(12;1.04e-10)|Breast(2;1.45e-16)|all_epithelial(3;4.81e-12)				Amlodipine(DB00381)|Diltiazem(DB00343)|Ibutilide(DB00308)|Lercanidipine(DB00528)|Magnesium Sulfate(DB00653)|Nimodipine(DB00393)|Nitrendipine(DB01054)|Verapamil(DB00661)	GGAGATCTTCGAATTCACCAC	0.542													50	25					0	0	0.014410	0	0
BPTF	2186	broad.mit.edu	37	17	65907764	65907764	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:65907764C>T	uc002jgf.2	+	11	3825	c.3764C>T	c.(3763-3765)TCA>TTA	p.S1255L	BPTF_uc002jge.2_Missense_Mutation_p.S1381L	NM_182641	NP_872579	Q12830	BPTF_HUMAN	bromodomain PHD finger transcription factor	1381					brain development|chromatin remodeling|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|NURF complex	sequence-specific DNA binding|transcription factor binding|zinc ion binding			ovary(2)|skin(2)	4	all_cancers(12;6e-11)		BRCA - Breast invasive adenocarcinoma(8;7.48e-08)|Colorectal(3;0.0984)|LUSC - Lung squamous cell carcinoma(166;0.24)			GCTTTACATTCATCAGTGCCT	0.408													43	20					0	0	0.007835	0	0
SLC16A6	9120	broad.mit.edu	37	17	66267746	66267746	+	Silent	SNP	G	A	A	rs141718604		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:66267746G>A	uc002jgz.1	-	5	743	c.555C>T	c.(553-555)TTC>TTT	p.F185F	ARSG_uc002jhc.2_Intron|SLC16A6_uc002jha.1_Silent_p.F185F	NM_004694	NP_004685	O15403	MOT7_HUMAN	solute carrier family 16, member 6	185	Helical; (Potential).					integral to plasma membrane|membrane fraction	monocarboxylic acid transmembrane transporter activity|symporter activity				0	all_cancers(12;1.24e-09)		BRCA - Breast invasive adenocarcinoma(8;3.17e-08)|LUSC - Lung squamous cell carcinoma(166;0.24)		Pyruvic acid(DB00119)	GTAGGCCCACGAAGAGGAGGC	0.458													16	28					0	0	0.006122	0	0
ABCA8	10351	broad.mit.edu	37	17	66928482	66928482	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:66928482C>T	uc002jhp.2	-	6	923	c.744G>A	c.(742-744)AGG>AGA	p.R248R	ABCA8_uc002jhq.2_Silent_p.R248R|ABCA8_uc010wqq.1_Silent_p.R248R|ABCA8_uc010wqr.1_Silent_p.R187R|ABCA8_uc002jhr.2_Silent_p.R248R|ABCA8_uc002jhs.2_Silent_p.R248R|ABCA8_uc002jht.2_Silent_p.R248R	NM_007168	NP_009099	O94911	ABCA8_HUMAN	ATP-binding cassette, sub-family A member 8	248						integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3	Breast(10;4.56e-13)					TCATCCTTTTCCTCTCTCTTG	0.388													10	12					0	0	0.006214	0	0
ABCA6	23460	broad.mit.edu	37	17	67102348	67102348	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:67102348G>A	uc002jhw.1	-	19	2569	c.2394C>T	c.(2392-2394)TTC>TTT	p.F798F	ABCA6_uc002jhx.1_Silent_p.F251F	NM_080284	NP_525023	Q8N139	ABCA6_HUMAN	ATP-binding cassette, sub-family A, member 6	798					transport	integral to membrane	ATP binding|ATPase activity			upper_aerodigestive_tract(2)|large_intestine(2)|ovary(2)|skin(1)	7	Breast(10;5.65e-12)					CCACTTGTTCGAAATCTATAA	0.378													13	6					0	0	0.001855	0	0
FDXR	2232	broad.mit.edu	37	17	72858944	72858944	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:72858944G>A	uc002jly.2	-	12	1558	c.1471C>T	c.(1471-1473)CAC>TAC	p.H491Y	GRIN2C_uc002jlt.1_5'Flank|GRIN2C_uc010wrh.1_5'Flank|GRIN2C_uc002jlu.1_5'Flank|GRIN2C_uc002jlv.1_5'Flank|FDXR_uc010wri.1_Missense_Mutation_p.H439Y|FDXR_uc010wrj.1_Missense_Mutation_p.H489Y|FDXR_uc002jlw.2_Missense_Mutation_p.H248Y|FDXR_uc002jlx.2_Missense_Mutation_p.H497Y|FDXR_uc002jmc.2_Missense_Mutation_p.H463Y|FDXR_uc010wrk.1_Missense_Mutation_p.H522Y|FDXR_uc010wrl.1_Missense_Mutation_p.H534Y|FDXR_uc002jma.2_Missense_Mutation_p.H492Y|FDXR_uc010wrm.1_Missense_Mutation_p.H451Y|FDXR_uc002jlz.2_Missense_Mutation_p.H483Y|FDXR_uc002jmb.2_RNA	NM_024417	NP_077728	P22570	ADRO_HUMAN	ferredoxin reductase isoform 1 precursor	491					cholesterol metabolic process|electron transport chain|steroid biosynthetic process|transport	mitochondrial matrix	ferredoxin-NADP+ reductase activity|protein binding				0	all_lung(278;0.172)|Lung NSC(278;0.207)					TGGGCTCAGTGGCCCAGGAGG	0.682													8	45					0	0	0.003080	0	0
C17orf28	283987	broad.mit.edu	37	17	72954523	72954523	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:72954523C>T	uc002jmj.3	-	11	1440	c.1291G>A	c.(1291-1293)GGG>AGG	p.G431R	C17orf28_uc010wrs.1_Missense_Mutation_p.G230R	NM_030630	NP_085133	Q8IV36	CQ028_HUMAN	hypothetical protein LOC283987	431	Helical; (Potential).					integral to membrane|plasma membrane	protein binding				0	all_lung(278;0.151)|Lung NSC(278;0.185)					TTCCGCTCCCCGCTCAGAAGC	0.632											OREG0024721	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	3	6					0	0	0.004672	0	0
WBP2	23558	broad.mit.edu	37	17	73843574	73843574	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:73843574G>A	uc002jps.2	-	6	772	c.649C>T	c.(649-651)CCT>TCT	p.P217S	UNC13D_uc002jpp.2_5'Flank|UNC13D_uc010wsk.1_5'Flank|UNC13D_uc002jpq.1_5'Flank|WBP2_uc002jpr.2_Missense_Mutation_p.P183S|WBP2_uc010wsl.1_Missense_Mutation_p.P183S|WBP2_uc002jpt.2_Missense_Mutation_p.P213S|WBP2_uc002jpu.1_RNA|WBP2_uc010wsm.1_Missense_Mutation_p.P172S|WBP2_uc010wsn.1_Missense_Mutation_p.P186S	NM_012478	NP_036610	Q969T9	WBP2_HUMAN	WW domain binding protein 2	217	Pro-rich.						protein binding				0			all cancers(21;2.61e-06)|Epithelial(20;2.92e-06)|BRCA - Breast invasive adenocarcinoma(9;0.00092)|LUSC - Lung squamous cell carcinoma(166;0.154)			TCACCTGCAGGAGTGGAGGGG	0.677													8	2					0	0	0.006214	0	0
ZACN	353174	broad.mit.edu	37	17	74078557	74078557	+	Silent	SNP	A	G	G	rs144821937		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:74078557A>G	uc002jqn.2	+	9	1145	c.1062A>G	c.(1060-1062)GGA>GGG	p.G354G	ZACN_uc002jqo.2_RNA|ZACN_uc010dgu.2_RNA|EXOC7_uc002jqp.1_3'UTR|EXOC7_uc010dgv.1_3'UTR|EXOC7_uc002jqs.2_3'UTR|EXOC7_uc002jqq.2_3'UTR|EXOC7_uc010wsw.1_3'UTR|EXOC7_uc010wsx.1_3'UTR|EXOC7_uc002jqr.2_3'UTR|EXOC7_uc010wsv.1_3'UTR	NM_180990	NP_851321	Q401N2	ZACN_HUMAN	zinc activated ligand-gated ion channel	354	Cytoplasmic (Potential).				response to zinc ion	integral to membrane|membrane fraction|plasma membrane|postsynaptic membrane	extracellular ligand-gated ion channel activity|receptor activity				0						CCTCCAGAGGAGTAAAGGGGT	0.562													3	66					0	0	0.004672	0	0
FOXJ1	2302	broad.mit.edu	37	17	74136158	74136158	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:74136158G>A	uc002jqw.2	-	1	409	c.319C>T	c.(319-321)CCA>TCA	p.P107S	FOXJ1_uc002jqx.2_Missense_Mutation_p.P107S|uc002jqy.1_5'Flank	NM_001454	NP_001445	Q92949	FOXJ1_HUMAN	forkhead box J1	107					actin cytoskeleton organization|activation of Rho GTPase activity|central tolerance induction|cilium assembly|epithelial cell differentiation|establishment of apical/basal cell polarity|heart looping|humoral immune response|left/right pattern formation|leukocyte migration|lung development|negative regulation of B cell activation|negative regulation of germinal center formation|negative regulation of humoral immune response mediated by circulating immunoglobulin|negative regulation of interleukin-6 biosynthetic process|negative regulation of NF-kappaB transcription factor activity|negative regulation of T cell differentiation in thymus|negative regulation of T cell proliferation|negative regulation of transcription from RNA polymerase II promoter|positive regulation of central B cell tolerance induction|spermatogenesis	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|protein domain specific binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			pancreas(1)	1			LUSC - Lung squamous cell carcinoma(166;0.187)			TCGGGGGGTGGGGCCTGCAGC	0.726													7	18					0	0	0.004482	0	0
QRICH2	84074	broad.mit.edu	37	17	74287112	74287112	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:74287112G>A	uc002jrd.1	-	4	3378	c.3198C>T	c.(3196-3198)TTC>TTT	p.F1066F	QRICH2_uc010wsz.1_Silent_p.F992F|QRICH2_uc010dgw.1_Intron	NM_032134	NP_115510	Q9H0J4	QRIC2_HUMAN	glutamine rich 2	1066							protein binding			ovary(1)|pancreas(1)|lung(1)|central_nervous_system(1)|skin(1)	5						GTGCCAGCAGGAACTGGATCT	0.532													66	24					0	0	0.014410	0	0
TNRC6C	57690	broad.mit.edu	37	17	76094571	76094571	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:76094571C>T	uc002jud.2	+	18	5054	c.4454C>T	c.(4453-4455)TCC>TTC	p.S1485F	TNRC6C_uc002juf.2_Missense_Mutation_p.S1521F	NM_018996	NP_061869	Q9HCJ0	TNR6C_HUMAN	trinucleotide repeat containing 6C isoform 2	1485	Sufficient for translational repression when tethered to a target mRNA.				gene silencing by RNA|regulation of translation		nucleotide binding|RNA binding			ovary(1)|central_nervous_system(1)	2			BRCA - Breast invasive adenocarcinoma(99;0.00269)|Lung(188;0.0973)			AAGCCCTCCTCCACCTGGGGT	0.602													34	27					0	0	0.006999	0	0
SYNGR2	9144	broad.mit.edu	37	17	76166954	76166954	+	Missense_Mutation	SNP	C	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:76166954C>G	uc002juu.1	+	2	183	c.156C>G	c.(154-156)CAC>CAG	p.H52Q	SYNGR2_uc002jut.2_Missense_Mutation_p.H52Q|SYNGR2_uc002juv.1_Missense_Mutation_p.H52Q|SYNGR2_uc010dhi.1_Intron	NM_004710	NP_004701	O43760	SNG2_HUMAN	synaptogyrin 2	52	MARVEL.					integral to plasma membrane					0			BRCA - Breast invasive adenocarcinoma(99;0.00269)|Lung(188;0.0973)|OV - Ovarian serous cystadenocarcinoma(97;0.0994)			GCAATGCCCACGAGTCTAAGC	0.617													88	55					0	0	0.014410	0	0
AFMID	125061	broad.mit.edu	37	17	76201792	76201792	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:76201792C>T	uc002jva.3	+	9	768	c.753C>T	c.(751-753)TTC>TTT	p.F251F	AFMID_uc002jvb.3_Intron|AFMID_uc002juz.3_Silent_p.F251F	NM_001010982	NP_001010982	Q63HM1	AFMID_HUMAN	arylformamidase isoform 1	251						cytosol|nucleus	arylformamidase activity			large_intestine(1)|pancreas(1)	2			BRCA - Breast invasive adenocarcinoma(99;0.00269)|OV - Ovarian serous cystadenocarcinoma(97;0.134)			CCCCCGAATTCCACCGACAGT	0.592													21	11					0	0	0.010504	0	0
BIRC5	332	broad.mit.edu	37	17	76219625	76219625	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:76219625C>T	uc002jvg.2	+	4	540	c.419C>T	c.(418-420)GCC>GTC	p.A140V	BIRC5_uc002jvf.2_Missense_Mutation_p.A163V|BIRC5_uc002jvh.2_Missense_Mutation_p.P101S|BIRC5_uc002jvi.2_RNA|EPR1_uc002jvj.1_RNA	NM_001168	NP_001159	O15392	BIRC5_HUMAN	baculoviral IAP repeat-containing protein 5	140					anti-apoptosis|apoptosis|cell division|chromosome segregation|cytokinesis|establishment of chromosome localization|G2/M transition of mitotic cell cycle|mitosis|mitotic prometaphase|positive regulation of exit from mitosis|positive regulation of mitotic cell cycle|protein complex localization|spindle checkpoint	centriole|chromosome passenger complex|chromosome, centromeric region|cytoplasm|cytoplasmic microtubule|cytosol|interphase microtubule organizing center|midbody|midbody|nuclear chromosome|spindle|spindle microtubule	caspase inhibitor activity|chaperone binding|cobalt ion binding|cofactor binding|cysteine-type endopeptidase inhibitor activity|metal ion binding|microtubule binding|protein heterodimerization activity|protein homodimerization activity|Ran GTPase binding|zinc ion binding			kidney(1)	1			BRCA - Breast invasive adenocarcinoma(99;0.00269)|OV - Ovarian serous cystadenocarcinoma(97;0.153)			CAGCTGGCTGCCATGGATTGA	0.547													25	13					0	0	0.002780	0	0
CANT1	124583	broad.mit.edu	37	17	76993403	76993403	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:76993403G>A	uc002jwn.2	-	4	741	c.302C>T	c.(301-303)GCT>GTT	p.A101V	CANT1_uc002jwk.2_Missense_Mutation_p.A101V|CANT1_uc002jwj.2_Missense_Mutation_p.A101V|CANT1_uc002jwl.2_RNA|CANT1_uc002jwm.1_5'Flank	NM_001159772	NP_001153244	Q8WVQ1	CANT1_HUMAN	calcium activated nucleotidase 1	101	Lumenal (Potential).				positive regulation of I-kappaB kinase/NF-kappaB cascade	endoplasmic reticulum membrane|Golgi cisterna membrane|integral to membrane	calcium ion binding|nucleoside-diphosphatase activity|signal transducer activity				0			BRCA - Breast invasive adenocarcinoma(99;0.0362)|OV - Ovarian serous cystadenocarcinoma(97;0.139)			CCGAATCCCAGCCGGTGTCCT	0.582			T	ETV4	prostate								134	59					0	0	0.014410	0	0
NPLOC4	55666	broad.mit.edu	37	17	79580495	79580495	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:79580495G>A	uc002kat.3	-	4	417	c.235C>T	c.(235-237)CCC>TCC	p.P79S	NPLOC4_uc002kau.3_Missense_Mutation_p.P79S|NPLOC4_uc010wur.1_5'UTR	NM_017921	NP_060391	Q8TAT6	NPL4_HUMAN	nuclear protein localization 4	79					cellular membrane fusion|ER-associated protein catabolic process|Golgi organization	cytosol|endoplasmic reticulum|nuclear outer membrane-endoplasmic reticulum membrane network|nucleus	zinc ion binding			ovary(1)|central_nervous_system(1)	2	all_neural(118;0.0878)|Melanoma(429;0.242)|all_lung(278;0.246)		BRCA - Breast invasive adenocarcinoma(99;0.0282)|OV - Ovarian serous cystadenocarcinoma(97;0.0739)			AGGCTCGAGGGAAACAGGAAC	0.512													12	9					0	0	0.010729	0	0
TSPAN10	83882	broad.mit.edu	37	17	79612079	79612079	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:79612079C>T	uc010die.2	+	2	188	c.98C>T	c.(97-99)CCA>CTA	p.P33L	TSPAN10_uc002kaw.1_Missense_Mutation_p.P33L|TSPAN10_uc010did.1_RNA	NM_031945	NP_114151	Q9H1Z9	TSN10_HUMAN	tetraspanin 10	33						integral to membrane				ovary(1)	1	all_neural(118;0.0878)|all_lung(278;0.175)|Lung NSC(278;0.192)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0101)|OV - Ovarian serous cystadenocarcinoma(97;0.0739)			TGCCTAGGTCCAGTGCCCAGG	0.657													10	29					0	0	0.013537	0	0
EMILIN2	84034	broad.mit.edu	37	18	2891813	2891813	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:2891813G>A	uc002kln.2	+	4	1847	c.1688G>A	c.(1687-1689)GGG>GAG	p.G563E		NM_032048	NP_114437	Q9BXX0	EMIL2_HUMAN	elastin microfibril interfacer 2 precursor	563					cell adhesion	collagen	extracellular matrix constituent conferring elasticity|protein binding			skin(2)|ovary(1)	3				READ - Rectum adenocarcinoma(2;0.1)		AAGCCTCATGGGATGGAAGGT	0.488													11	47					0	0	0.010729	0	0
EMILIN2	84034	broad.mit.edu	37	18	2891879	2891879	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:2891879C>T	uc002kln.2	+	4	1913	c.1754C>T	c.(1753-1755)TCT>TTT	p.S585F		NM_032048	NP_114437	Q9BXX0	EMIL2_HUMAN	elastin microfibril interfacer 2 precursor	585	Potential.				cell adhesion	collagen	extracellular matrix constituent conferring elasticity|protein binding			skin(2)|ovary(1)	3				READ - Rectum adenocarcinoma(2;0.1)		CTTTTGAAATCTCTCAACGAC	0.458													7	28					0	0	0.003080	0	0
MYOM1	8736	broad.mit.edu	37	18	3188987	3188987	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:3188987C>T	uc002klp.2	-	4	864	c.530G>A	c.(529-531)GGA>GAA	p.G177E	MYOM1_uc002klq.2_Missense_Mutation_p.G177E	NM_003803	NP_003794	P52179	MYOM1_HUMAN	myomesin 1 isoform a	177						striated muscle myosin thick filament	structural constituent of muscle			ovary(3)|central_nervous_system(1)|pancreas(1)	5						TGTTGTGATTCCTTCCTCACT	0.473													27	78					0	0	0.006320	0	0
DLGAP1	9229	broad.mit.edu	37	18	3879862	3879862	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:3879862G>A	uc002kmf.2	-	1	274	c.207C>T	c.(205-207)ACC>ACT	p.T69T	DLGAP1_uc010wyz.1_Silent_p.T69T|DLGAP1_uc002kmk.2_Silent_p.T69T|uc002kml.1_Intron	NM_004746	NP_004737	O14490	DLGP1_HUMAN	discs large homolog-associated protein 1 isoform	69					synaptic transmission	cell junction|postsynaptic density|postsynaptic membrane				ovary(2)|pancreas(1)|skin(1)	4		Colorectal(8;0.0257)				TGCGGGGGAAGGTGCTGCTGG	0.677													11	53					0	0	0.008291	0	0
ZFP161	7541	broad.mit.edu	37	18	5291963	5291963	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:5291963G>A	uc002kmq.2	-	4	405	c.244C>T	c.(244-246)CGT>TGT	p.R82C	ZFP161_uc002kmr.2_Missense_Mutation_p.R82C|ZFP161_uc010dkp.2_Missense_Mutation_p.R82C	NM_003409	NP_003400	O43829	ZF161_HUMAN	zinc finger protein 161 homolog	82	BTB.				negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						ATATCAGAACGAAGAAAATCT	0.373													8	32					0	0	0.003080	0	0
L3MBTL4	91133	broad.mit.edu	37	18	6138236	6138236	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:6138236C>T	uc002kmz.3	-	14	1316	c.1156G>A	c.(1156-1158)GGA>AGA	p.G386R	L3MBTL4_uc010dkt.2_Missense_Mutation_p.G386R|L3MBTL4_uc002kmy.3_Missense_Mutation_p.G224R	NM_173464	NP_775735	Q8NA19	LMBL4_HUMAN	l(3)mbt-like 4	386					chromatin modification	nucleus	sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(2)|pancreas(1)	3		Colorectal(10;0.0249)				TGGCCTATTCCTCGGCACCCG	0.438													6	14					0	0	0.004482	0	0
ARHGAP28	79822	broad.mit.edu	37	18	6908965	6908965	+	Silent	SNP	T	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:6908965T>C	uc010wzi.1	+	16	1744	c.1506T>C	c.(1504-1506)GGT>GGC	p.G502G	ARHGAP28_uc002kne.2_Silent_p.G520G			B4DXL2	B4DXL2_HUMAN	SubName: Full=Putative uncharacterized protein ARHGAP28;	502					signal transduction	intracellular				pancreas(1)	1		Colorectal(10;0.168)				TCAGTCATGGTTCATCAGAAT	0.284													9	38					0	0	0.006214	0	0
LAMA1	284217	broad.mit.edu	37	18	6965358	6965358	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:6965358G>A	uc002knm.2	-	50	7218	c.7124C>T	c.(7123-7125)ACC>ATC	p.T2375I	LAMA1_uc002knl.2_5'UTR|LAMA1_uc010wzj.1_Missense_Mutation_p.T1851I	NM_005559	NP_005550	P25391	LAMA1_HUMAN	laminin, alpha 1 precursor	2375	Laminin G-like 2.				axon guidance|cell adhesion|cell surface receptor linked signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	extracellular space|laminin-1 complex|laminin-3 complex	extracellular matrix structural constituent|receptor binding			ovary(8)|large_intestine(4)|upper_aerodigestive_tract(2)|breast(2)|skin(2)|pancreas(2)|central_nervous_system(1)	21		Colorectal(10;0.172)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	TGTCAAAAGGGTAATGGGTCC	0.458													16	59					0	0	0.004990	0	0
LAMA1	284217	broad.mit.edu	37	18	6997746	6997746	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:6997746G>A	uc002knm.2	-	33	4895	c.4801C>T	c.(4801-4803)CTC>TTC	p.L1601F	LAMA1_uc010wzj.1_Missense_Mutation_p.L1077F	NM_005559	NP_005550	P25391	LAMA1_HUMAN	laminin, alpha 1 precursor	1601	Domain II and I.				axon guidance|cell adhesion|cell surface receptor linked signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	extracellular space|laminin-1 complex|laminin-3 complex	extracellular matrix structural constituent|receptor binding			ovary(8)|large_intestine(4)|upper_aerodigestive_tract(2)|breast(2)|skin(2)|pancreas(2)|central_nervous_system(1)	21		Colorectal(10;0.172)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	CCTACCTGGAGATATTTAGTT	0.428													10	46					0	0	0.010729	0	0
LAMA1	284217	broad.mit.edu	37	18	7044747	7044747	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:7044747G>A	uc002knm.2	-	7	1044	c.950C>T	c.(949-951)ACC>ATC	p.T317I	LAMA1_uc010wzj.1_5'UTR	NM_005559	NP_005550	P25391	LAMA1_HUMAN	laminin, alpha 1 precursor	317	Laminin EGF-like 1.				axon guidance|cell adhesion|cell surface receptor linked signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	extracellular space|laminin-1 complex|laminin-3 complex	extracellular matrix structural constituent|receptor binding			ovary(8)|large_intestine(4)|upper_aerodigestive_tract(2)|breast(2)|skin(2)|pancreas(2)|central_nervous_system(1)	21		Colorectal(10;0.172)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GGAGGACACGGTTCCCGGCCT	0.473													22	60					0	0	0.003330	0	0
KIAA0802	23255	broad.mit.edu	37	18	8798221	8798221	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:8798221T>C	uc002knr.2	+	10	2510	c.2368T>C	c.(2368-2370)TCC>CCC	p.S790P	KIAA0802_uc002knq.2_Missense_Mutation_p.S749P|KIAA0802_uc002kns.2_Missense_Mutation_p.S120P	NM_015210	NP_056025	Q9Y4B5	CC165_HUMAN	hypothetical protein LOC23255	1100											0						CTCCCCACACTCCCGGGTGCA	0.672													13	25					0	0	0.003163	0	0
IMPA2	3613	broad.mit.edu	37	18	12012207	12012207	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:12012207G>A	uc002kqp.1	+	4	588	c.374G>A	c.(373-375)CGA>CAA	p.R125Q	IMPA2_uc002kqo.1_5'UTR|IMPA2_uc010dlb.1_Missense_Mutation_p.R109Q|IMPA2_uc002kqq.1_5'UTR	NM_014214	NP_055029	O14732	IMPA2_HUMAN	inositol(myo)-1(or 4)-monophosphatase 2	125					inositol phosphate dephosphorylation|signal transduction	cytoplasm	inositol-1(or 4)-monophosphatase activity|metal ion binding|protein homodimerization activity			skin(2)	2					Lithium(DB01356)	TTTGCTGTTCGACAAGAGGTG	0.582													30	136					0	0	0.004289	0	0
CEP76	79959	broad.mit.edu	37	18	12674539	12674539	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:12674539G>A	uc002kri.2	-	11	1993	c.1837C>T	c.(1837-1839)CTT>TTT	p.L613F	PSMG2_uc002krg.2_Intron|CEP76_uc002krh.3_Missense_Mutation_p.L435F|CEP76_uc010wzz.1_Missense_Mutation_p.L538F	NM_024899	NP_079175	Q8TAP6	CEP76_HUMAN	centrosomal protein 76kDa	613					G2/M transition of mitotic cell cycle|regulation of centriole replication	centriole|cytosol	protein binding				0						CCTTACCGAAGACATGTGGCA	0.353													28	31					0	0	0.006320	0	0
MC2R	4158	broad.mit.edu	37	18	13884916	13884916	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:13884916C>T	uc002ksp.1	-	2	779	c.602G>A	c.(601-603)CGA>CAA	p.R201Q		NM_000529	NP_000520	Q01718	ACTHR_HUMAN	melanocortin 2 receptor	201	Cytoplasmic (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|positive regulation of cAMP biosynthetic process	integral to plasma membrane	corticotropin receptor activity|protein binding			ovary(4)|skin(1)	5					Corticotropin(DB01285)|Cosyntropin(DB01284)	GGTGTGGGATCGAGCCAGCAG	0.577													20	27					0	0	0.010504	0	0
CTAGE1	64693	broad.mit.edu	37	18	19997229	19997229	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:19997229C>T	uc002ktv.1	-	1	650	c.546G>A	c.(544-546)TGG>TGA	p.W182*		NM_172241	NP_758441	Q96RT6	CTGE2_HUMAN	cutaneous T-cell lymphoma-associated antigen 1	182	Potential.					integral to membrane				ovary(1)	1	all_cancers(21;0.000361)|all_epithelial(16;9.61e-06)|Colorectal(14;0.0533)|Lung NSC(20;0.0605)|Ovarian(2;0.116)|all_lung(20;0.135)					AATTTTCTTTCCAAGCATCTT	0.368													32	56					0	0	0.003271	0	0
CTAGE1	64693	broad.mit.edu	37	18	19997481	19997481	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:19997481C>T	uc002ktv.1	-	1	398	c.294G>A	c.(292-294)GAG>GAA	p.E98E		NM_172241	NP_758441	Q96RT6	CTGE2_HUMAN	cutaneous T-cell lymphoma-associated antigen 1	98	Potential.					integral to membrane				ovary(1)	1	all_cancers(21;0.000361)|all_epithelial(16;9.61e-06)|Colorectal(14;0.0533)|Lung NSC(20;0.0605)|Ovarian(2;0.116)|all_lung(20;0.135)					CGCAGGTTGCCTCCAAACTTT	0.373													33	148					0	0	0.003755	0	0
LAMA3	3909	broad.mit.edu	37	18	21483903	21483903	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:21483903G>A	uc002kuq.2	+	50	6411	c.6325G>A	c.(6325-6327)GAA>AAA	p.E2109K	LAMA3_uc002kur.2_Missense_Mutation_p.E2053K|LAMA3_uc002kus.3_Missense_Mutation_p.E500K|LAMA3_uc002kut.3_Missense_Mutation_p.E444K	NM_198129	NP_937762	Q16787	LAMA3_HUMAN	laminin alpha 3 subunit isoform 1	2109	Domain II and I.|Potential.				cell adhesion|epidermis development|hemidesmosome assembly|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|skin(2)|central_nervous_system(1)	11	all_cancers(21;7.81e-05)|all_epithelial(16;4.45e-07)|Lung NSC(20;0.00156)|all_lung(20;0.00508)|Colorectal(14;0.0202)|Ovarian(20;0.17)				Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	ATAGGAATATGAAAAATTAGC	0.363													7	43					0	0	0.003080	0	0
LAMA3	3909	broad.mit.edu	37	18	21508698	21508698	+	Missense_Mutation	SNP	C	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:21508698C>A	uc002kuq.2	+	64	8491	c.8405C>A	c.(8404-8406)CCC>CAC	p.P2802H	LAMA3_uc002kur.2_Missense_Mutation_p.P2746H|LAMA3_uc002kus.3_Missense_Mutation_p.P1193H|LAMA3_uc002kut.3_Missense_Mutation_p.P1137H	NM_198129	NP_937762	Q16787	LAMA3_HUMAN	laminin alpha 3 subunit isoform 1	2802	Laminin G-like 3.				cell adhesion|epidermis development|hemidesmosome assembly|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|skin(2)|central_nervous_system(1)	11	all_cancers(21;7.81e-05)|all_epithelial(16;4.45e-07)|Lung NSC(20;0.00156)|all_lung(20;0.00508)|Colorectal(14;0.0202)|Ovarian(20;0.17)				Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	ACCTTTCAACCCAGTGGCATA	0.408													12	43					0.00010058	0.000107504	0.013537	1	0
TTC39C	125488	broad.mit.edu	37	18	21694560	21694560	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:21694560G>A	uc002kuw.2	+	7	1479	c.1027G>A	c.(1027-1029)GAA>AAA	p.E343K	TTC39C_uc002kuu.2_Missense_Mutation_p.E282K	NM_001135993	NP_001129465	Q8N584	TT39C_HUMAN	tetratricopeptide repeat domain 39C isoform 1	343	TPR 1.						binding			ovary(1)	1						CACTGCTTTGGAACTTGCAGT	0.373													11	41					0	0	0.001855	0	0
TTC39C	125488	broad.mit.edu	37	18	21698134	21698134	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:21698134C>T	uc002kuw.2	+	8	1576	c.1124C>T	c.(1123-1125)TCC>TTC	p.S375F	TTC39C_uc002kuu.2_Missense_Mutation_p.S314F	NM_001135993	NP_001129465	Q8N584	TT39C_HUMAN	tetratricopeptide repeat domain 39C isoform 1	375	TPR 2.						binding			ovary(1)	1						GCATTTGATTCCTTTGAGAGG	0.433													7	54					0	0	0.001984	0	0
CABYR	26256	broad.mit.edu	37	18	21736152	21736152	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:21736152G>A	uc002kux.2	+	4	839	c.687G>A	c.(685-687)AAG>AAA	p.K229K	CABYR_uc010xbb.1_Silent_p.K131K|CABYR_uc002kuy.2_Intron|CABYR_uc002kuz.2_Intron|CABYR_uc002kva.2_Silent_p.K211K|CABYR_uc002kvb.2_Intron|CABYR_uc002kvc.2_Intron|CABYR_uc010dlw.2_RNA	NM_012189	NP_036321	O75952	CABYR_HUMAN	calcium-binding tyrosine	229					ciliary or flagellar motility|signal transduction|sperm capacitation	cytoplasm|cytoskeleton|flagellum|motile cilium|nucleus	calcium ion binding|cAMP-dependent protein kinase regulator activity|enzyme binding|protein heterodimerization activity|SH3 domain binding				0	all_cancers(21;9.13e-05)|all_epithelial(16;5.49e-07)|Lung NSC(20;0.00171)|all_lung(20;0.0055)|Colorectal(14;0.0305)|Ovarian(20;0.17)					GTTCTGGAAAGGTGCTAGAAG	0.488													15	24					0	0	0.002450	0	0
CABYR	26256	broad.mit.edu	37	18	21736228	21736228	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:21736228G>A	uc002kux.2	+	4	915	c.763G>A	c.(763-765)GAA>AAA	p.E255K	CABYR_uc010xbb.1_Missense_Mutation_p.E157K|CABYR_uc002kuy.2_Intron|CABYR_uc002kuz.2_Intron|CABYR_uc002kva.2_Missense_Mutation_p.E237K|CABYR_uc002kvb.2_Intron|CABYR_uc002kvc.2_Intron|CABYR_uc010dlw.2_RNA	NM_012189	NP_036321	O75952	CABYR_HUMAN	calcium-binding tyrosine	255					ciliary or flagellar motility|signal transduction|sperm capacitation	cytoplasm|cytoskeleton|flagellum|motile cilium|nucleus	calcium ion binding|cAMP-dependent protein kinase regulator activity|enzyme binding|protein heterodimerization activity|SH3 domain binding				0	all_cancers(21;9.13e-05)|all_epithelial(16;5.49e-07)|Lung NSC(20;0.00171)|all_lung(20;0.0055)|Colorectal(14;0.0305)|Ovarian(20;0.17)					AAATGAGGCTGAACCATCAAC	0.463													8	16					0	0	0.003080	0	0
OSBPL1A	114876	broad.mit.edu	37	18	21752418	21752418	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:21752418G>A	uc002kve.2	-	22	2297	c.2123C>T	c.(2122-2124)CCC>CTC	p.P708L	OSBPL1A_uc002kvd.2_Missense_Mutation_p.P195L|OSBPL1A_uc010xbc.1_Missense_Mutation_p.P326L	NM_080597	NP_542164	Q9BXW6	OSBL1_HUMAN	oxysterol-binding protein-like 1A isoform B	708					cholesterol metabolic process|lipid transport|vesicle-mediated transport		phospholipid binding			ovary(4)	4	all_cancers(21;0.000396)|all_epithelial(16;4.36e-06)|Lung NSC(20;0.00171)|all_lung(20;0.0055)|Colorectal(14;0.0505)|Ovarian(20;0.17)					ACAGCAGGTGGGATTTGTCCA	0.393													18	35					0	0	0.007413	0	0
CHST9	83539	broad.mit.edu	37	18	24496504	24496504	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:24496504C>T	uc002kwd.2	-	5	1249	c.1051G>A	c.(1051-1053)GAA>AAA	p.E351K	C18orf16_uc002kwb.2_Intron|C18orf16_uc010xbm.1_Intron|CHST9_uc002kwc.2_Missense_Mutation_p.E266K|CHST9_uc002kwe.2_Missense_Mutation_p.E351K	NM_031422	NP_113610	Q7L1S5	CHST9_HUMAN	GalNAc-4-sulfotransferase 2	351	Lumenal (Potential).				carbohydrate biosynthetic process|glycosaminoglycan metabolic process|hormone biosynthetic process|proteoglycan biosynthetic process|sulfur compound metabolic process	extracellular region|Golgi membrane|integral to membrane	N-acetylgalactosamine 4-O-sulfotransferase activity			ovary(2)|skin(1)	3	all_lung(6;0.0145)|Ovarian(20;0.124)					CTGACCTTTTCCCAGTGAATG	0.393													20	63					0	0	0.010504	0	0
DSC3	1825	broad.mit.edu	37	18	28598740	28598740	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:28598740C>T	uc002kwj.3	-	8	1124	c.969G>A	c.(967-969)ATG>ATA	p.M323I	DSC3_uc002kwi.3_Missense_Mutation_p.M323I	NM_001941	NP_001932	Q14574	DSC3_HUMAN	desmocollin 3 isoform Dsc3a preproprotein	323	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion|protein stabilization	desmosome|integral to membrane|membrane fraction	calcium ion binding|gamma-catenin binding			ovary(2)|skin(2)	4			OV - Ovarian serous cystadenocarcinoma(10;0.125)			CTTGTACTTTCATTATCAATG	0.328													15	35					0	0	0.004007	0	0
DSC1	1823	broad.mit.edu	37	18	28737393	28737393	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:28737393C>T	uc002kwn.2	-	3	554	c.292G>A	c.(292-294)GAT>AAT	p.D98N	DSC1_uc002kwm.2_Missense_Mutation_p.D98N	NM_024421	NP_077739	Q08554	DSC1_HUMAN	desmocollin 1 isoform Dsc1a preproprotein	98					homophilic cell adhesion	desmosome|gap junction|integral to membrane|membrane fraction	calcium ion binding			ovary(3)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(10;0.00778)			CTCTGACCATCTGAAAGGAAA	0.408													13	21					0	0	0.013537	0	0
DSG1	1828	broad.mit.edu	37	18	28934722	28934722	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:28934722G>A	uc002kwp.2	+	15	2775	c.2563G>A	c.(2563-2565)GAT>AAT	p.D855N	DSG1_uc010xbp.1_Missense_Mutation_p.D214N	NM_001942	NP_001933	Q02413	DSG1_HUMAN	desmoglein 1 preproprotein	855	Desmoglein repeat 2.|Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|cell-cell junction assembly|cellular component disassembly involved in apoptosis|homophilic cell adhesion|protein stabilization	cytosol|desmosome|integral to membrane|internal side of plasma membrane	calcium ion binding|gamma-catenin binding|toxin binding			skin(3)|ovary(2)|central_nervous_system(2)	7			OV - Ovarian serous cystadenocarcinoma(10;0.00559)			GCACGTTCACGATAACCGACC	0.517													36	77					0	0	0.006230	0	0
DSG4	147409	broad.mit.edu	37	18	28986274	28986274	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:28986274C>T	uc002kwq.2	+	12	2006	c.1871C>T	c.(1870-1872)TCA>TTA	p.S624L	DSG4_uc002kwr.2_Missense_Mutation_p.S624L	NM_177986	NP_817123	Q86SJ6	DSG4_HUMAN	desmoglein 4 isoform 2 preproprotein	624	Extracellular (Potential).				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(3)	8			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			GCTGGAGTTTCAAATGTTGGT	0.478													14	63					0	0	0.003163	0	0
DSG4	147409	broad.mit.edu	37	18	28989757	28989758	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:28989757_28989758GG>AA	uc002kwq.2	+	14	2258_2259	c.2123_2124GG>AA	c.(2122-2124)CGG>CAA	p.R708Q	DSG4_uc002kwr.2_Intron	NM_177986	NP_817123	Q86SJ6	DSG4_HUMAN	desmoglein 4 isoform 2 preproprotein	708	Cytoplasmic (Potential).				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(3)	8			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			ACCCAGGATCGGATGGATTCCT	0.327													14	23					0	0	0.004672	0	0
DSG4	147409	broad.mit.edu	37	18	28991347	28991347	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:28991347G>A	uc002kwq.2	+	15	2426	c.2291G>A	c.(2290-2292)GGA>GAA	p.G764E	DSG4_uc002kwr.2_Missense_Mutation_p.G783E	NM_177986	NP_817123	Q86SJ6	DSG4_HUMAN	desmoglein 4 isoform 2 preproprotein	764	Cytoplasmic (Potential).				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(3)	8			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			TCTACCATGGGAACCCTGCGG	0.443													14	28					0	0	0.001855	0	0
DSG4	147409	broad.mit.edu	37	18	28993139	28993139	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:28993139C>T	uc002kwq.2	+	16	2839	c.2704C>T	c.(2704-2706)CAT>TAT	p.H902Y	DSG4_uc002kwr.2_Missense_Mutation_p.H921Y	NM_177986	NP_817123	Q86SJ6	DSG4_HUMAN	desmoglein 4 isoform 2 preproprotein	902	Cytoplasmic (Potential).|Desmoglein repeat 1.				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(3)	8			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			ACCCGTGGTCCATGGGGATAT	0.428													29	60					0	0	0.008361	0	0
DSG3	1830	broad.mit.edu	37	18	29049214	29049214	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:29049214C>T	uc002kws.2	+	12	1908	c.1799C>T	c.(1798-1800)CCA>CTA	p.P600L		NM_001944	NP_001935	P32926	DSG3_HUMAN	desmoglein 3 preproprotein	600	Extracellular (Potential).				cellular component disassembly involved in apoptosis|homophilic cell adhesion	cytosol|desmosome|integral to membrane	calcium ion binding			skin(4)|ovary(3)|lung(1)|central_nervous_system(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			ACTTCTTACCCAACCACAAGC	0.587													26	40					0	0	0.004656	0	0
DSG3	1830	broad.mit.edu	37	18	29049230	29049230	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:29049230G>A	uc002kws.2	+	12	1924	c.1815G>A	c.(1813-1815)GGG>GGA	p.G605G		NM_001944	NP_001935	P32926	DSG3_HUMAN	desmoglein 3 preproprotein	605	Extracellular (Potential).				cellular component disassembly involved in apoptosis|homophilic cell adhesion	cytosol|desmosome|integral to membrane	calcium ion binding			skin(4)|ovary(3)|lung(1)|central_nervous_system(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			CAAGCCCTGGGACCAGGTATG	0.587													26	41					0	0	0.003954	0	0
DSG3	1830	broad.mit.edu	37	18	29052370	29052370	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:29052370C>T	uc002kws.2	+	13	2130	c.2021C>T	c.(2020-2022)GCC>GTC	p.A674V	DSG3_uc002kwt.2_5'Flank	NM_001944	NP_001935	P32926	DSG3_HUMAN	desmoglein 3 preproprotein	674	Cytoplasmic (Potential).				cellular component disassembly involved in apoptosis|homophilic cell adhesion	cytosol|desmosome|integral to membrane	calcium ion binding			skin(4)|ovary(3)|lung(1)|central_nervous_system(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			ATTGAAGGAGCCCATCCTGAA	0.418													13	32					0	0	0.013537	0	0
DSG3	1830	broad.mit.edu	37	18	29054237	29054237	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:29054237C>T	uc002kws.2	+	15	2364	c.2255C>T	c.(2254-2256)GCC>GTC	p.A752V	DSG3_uc002kwt.2_Missense_Mutation_p.A34V	NM_001944	NP_001935	P32926	DSG3_HUMAN	desmoglein 3 preproprotein	752	Cytoplasmic (Potential).				cellular component disassembly involved in apoptosis|homophilic cell adhesion	cytosol|desmosome|integral to membrane	calcium ion binding			skin(4)|ovary(3)|lung(1)|central_nervous_system(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			TTCGGAGCAGCCACTGGAGTT	0.537													12	13					0	0	0.010729	0	0
FAM59A	64762	broad.mit.edu	37	18	29868073	29868073	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:29868073G>A	uc002kxl.2	-	4	543	c.487C>T	c.(487-489)CTT>TTT	p.L163F	FAM59A_uc002kxk.1_Missense_Mutation_p.L163F	NM_022751	NP_073588	Q9H706	FA59A_HUMAN	family with sequence similarity 59, member A	163	CABIT.									ovary(1)|skin(1)	2						TTTGCATAAAGGATTTCTGCC	0.428													12	40					0	0	0.013537	0	0
WBP11P1	441818	broad.mit.edu	37	18	30092380	30092380	+	RNA	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:30092380C>T	uc010dmc.2	+	1		c.755C>T				NR_003558				Homo sapiens cDNA clone IMAGE:5265376, partial cds.												0						ACGTGGTGTTCCACATTTGCC	0.562													8	33					0	0	0.003080	0	0
WBP11P1	441818	broad.mit.edu	37	18	30092386	30092386	+	RNA	SNP	T	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:30092386T>A	uc010dmc.2	+	1		c.761T>A				NR_003558				Homo sapiens cDNA clone IMAGE:5265376, partial cds.												0						TGTTCCACATTTGCCTCCTGG	0.562													16	25					0	0	0.003163	0	0
KLHL14	57565	broad.mit.edu	37	18	30321904	30321904	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:30321904C>T	uc002kxm.1	-	3	1444	c.1056G>A	c.(1054-1056)TGG>TGA	p.W352*	KLHL14_uc010dmd.1_5'UTR	NM_020805	NP_065856	Q9P2G3	KLH14_HUMAN	kelch-like 14	352	Kelch 1.					cytosol|endoplasmic reticulum membrane				ovary(1)	1						TGAGTATTTTCCATGTCTTCT	0.368													7	13					0	0	0.001984	0	0
C18orf34	374864	broad.mit.edu	37	18	30928858	30928858	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:30928858C>T	uc002kxn.2	-	7	595	c.453G>A	c.(451-453)AAG>AAA	p.K151K	C18orf34_uc010xbr.1_Silent_p.K151K|C18orf34_uc010dmf.1_Intron|C18orf34_uc002kxo.2_Silent_p.K151K|C18orf34_uc002kxp.2_Silent_p.K151K	NM_001105528	NP_001098998	Q5BJE1	CR034_HUMAN	hypothetical protein LOC374864 isoform 1	151										ovary(1)	1						CTTTACCTCTCTTTTCTCCTG	0.333													11	19					0	0	0.013537	0	0
ASXL3	80816	broad.mit.edu	37	18	31325889	31325889	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:31325889C>T	uc010dmg.1	+	12	6132	c.6077C>T	c.(6076-6078)CCT>CTT	p.P2026L	ASXL3_uc002kxq.2_Missense_Mutation_p.P1733L	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	2026	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						ccccctccccctccacccttg	0.259													3	3					0	0	0.004672	0	0
ASXL3	80816	broad.mit.edu	37	18	31326339	31326339	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:31326339G>A	uc010dmg.1	+	12	6582	c.6527G>A	c.(6526-6528)GGG>GAG	p.G2176E	ASXL3_uc002kxq.2_Missense_Mutation_p.G1883E	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	2176					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						AAGTCCATTGGGATTTTGGGA	0.483													31	78					0	0	0.003755	0	0
NOL4	8715	broad.mit.edu	37	18	31537330	31537330	+	Missense_Mutation	SNP	A	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:31537330A>C	uc010dmi.2	-	8	1617	c.1388T>G	c.(1387-1389)CTC>CGC	p.L463R	NOL4_uc010xbs.1_Missense_Mutation_p.L178R|NOL4_uc002kxr.3_Intron|NOL4_uc010xbt.1_Missense_Mutation_p.L389R|NOL4_uc010dmh.2_Intron|NOL4_uc010xbu.1_Intron|NOL4_uc002kxt.3_Intron|NOL4_uc010xbv.1_Intron	NM_003787	NP_003778	O94818	NOL4_HUMAN	nucleolar protein 4	463						nucleolus	RNA binding			ovary(3)	3						GCAGGACTTGAGGTAAGTACG	0.438													16	55					0	0	0.004990	0	0
NOL4	8715	broad.mit.edu	37	18	31537457	31537457	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:31537457C>T	uc010dmi.2	-	8	1490	c.1261G>A	c.(1261-1263)GAA>AAA	p.E421K	NOL4_uc010xbs.1_Missense_Mutation_p.E136K|NOL4_uc002kxr.3_Intron|NOL4_uc010xbt.1_Missense_Mutation_p.E347K|NOL4_uc010dmh.2_Intron|NOL4_uc010xbu.1_Intron|NOL4_uc002kxt.3_Intron|NOL4_uc010xbv.1_Intron	NM_003787	NP_003778	O94818	NOL4_HUMAN	nucleolar protein 4	421						nucleolus	RNA binding			ovary(3)	3						TCCAAGTTTTCATCTACAAAC	0.478													9	13					0	0	0.004482	0	0
DTNA	1837	broad.mit.edu	37	18	32455268	32455268	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:32455268C>T	uc010dmn.1	+	17	1729	c.1728C>T	c.(1726-1728)CCC>CCT	p.P576P	DTNA_uc002kxw.2_Silent_p.P519P|DTNA_uc010dmj.2_Silent_p.P516P|DTNA_uc002kxz.2_Silent_p.P523P|DTNA_uc002kxy.2_Silent_p.P516P|DTNA_uc010xby.1_Silent_p.P266P|DTNA_uc010xbz.1_Silent_p.P285P|DTNA_uc010xca.1_Silent_p.P228P|DTNA_uc002kye.2_Silent_p.P224P	NM_001390	NP_001381	Q9Y4J8	DTNA_HUMAN	dystrobrevin alpha isoform 1	576					neuromuscular synaptic transmission|signal transduction|striated muscle contraction	cell junction|cytoplasm|synapse	calcium ion binding|protein binding|zinc ion binding				0						TTCCCATGCCCATCCGGTCAG	0.592													21	46					0	0	0.010504	0	0
C18orf10	25941	broad.mit.edu	37	18	34376949	34376949	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:34376949G>A	uc002kzw.1	-	7	1150	c.722C>T	c.(721-723)TCC>TTC	p.S241F	C18orf10_uc002kzv.1_Intron|C18orf10_uc010xci.1_Missense_Mutation_p.S206F|C18orf10_uc002kzx.1_Missense_Mutation_p.S198F	NM_015476	NP_056291	Q68CL5	TPGS2_HUMAN	tubulin polyglutamylase complex subunit 2	241						cytoplasm|microtubule				skin(1)	1						ATTCACAAAGGAGTCGGTCTC	0.443													23	99					0	0	0.014323	0	0
RIT2	6014	broad.mit.edu	37	18	40323459	40323459	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:40323459C>T	uc002lav.2	-	5	826	c.653G>A	c.(652-654)TGA>TAA	p.*218*	RIT2_uc010dnf.2_3'UTR	NM_002930	NP_002921	Q99578	RIT2_HUMAN	Ras-like without CAAX 2	218					nerve growth factor receptor signaling pathway|small GTPase mediated signal transduction|synaptic transmission	intracellular|plasma membrane	calmodulin binding|GTP binding|GTPase activity			ovary(1)	1						GCAAAGATATCATGTCATATT	0.378													28	37					0	0	0.005443	0	0
RIT2	6014	broad.mit.edu	37	18	40695475	40695475	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:40695475C>T	uc002lav.2	-	1	183	c.10G>A	c.(10-12)GAA>AAA	p.E4K	RIT2_uc010dnf.2_Missense_Mutation_p.E4K	NM_002930	NP_002921	Q99578	RIT2_HUMAN	Ras-like without CAAX 2	4					nerve growth factor receptor signaling pathway|small GTPase mediated signal transduction|synaptic transmission	intracellular|plasma membrane	calmodulin binding|GTP binding|GTPase activity			ovary(1)	1						GCTTCATTTTCTACCTCCATC	0.517													14	58					0	0	0.003163	0	0
SYT4	6860	broad.mit.edu	37	18	40850576	40850576	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:40850576C>T	uc002law.2	-	4	1377	c.1008G>A	c.(1006-1008)AAG>AAA	p.K336K	SYT4_uc010dng.2_RNA|SYT4_uc010xcm.1_Silent_p.K318K|SYT4_uc010dnh.2_Intron	NM_020783	NP_065834	Q9H2B2	SYT4_HUMAN	synaptotagmin IV	336	C2 2.|Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane	transporter activity			skin(5)	5						TGGAGATTCTCTTTTTGGCAT	0.428													14	45					0	0	0.002450	0	0
SYT4	6860	broad.mit.edu	37	18	40853803	40853803	+	Silent	SNP	C	T	T	rs150432952		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:40853803C>T	uc002law.2	-	2	960	c.591G>A	c.(589-591)ACG>ACA	p.T197T	SYT4_uc010dng.2_Intron|SYT4_uc010xcm.1_Silent_p.T179T|SYT4_uc010dnh.2_Intron	NM_020783	NP_065834	Q9H2B2	SYT4_HUMAN	synaptotagmin IV	197	Phospholipid binding (Probable).|C2 1.|Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane	transporter activity	p.T197T(2)		skin(5)	5						CTGGGAGGATCGTCATTTTGA	0.443													7	55					0	0	0.001984	0	0
SETBP1	26040	broad.mit.edu	37	18	42281671	42281671	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:42281671G>A	uc010dni.2	+	2	656	c.360G>A	c.(358-360)TTG>TTA	p.L120L	SETBP1_uc002lay.2_Silent_p.L120L	NM_015559	NP_056374	Q9Y6X0	SETBP_HUMAN	SET binding protein 1 isoform a	120						nucleus	DNA binding			upper_aerodigestive_tract(2)|large_intestine(1)	3				Colorectal(1;0.0622)|COAD - Colon adenocarcinoma(74;0.201)		CAAAGAATTTGGAGAACTATA	0.463									Schinzel-Giedion_syndrome				11	29					0	0	0.010729	0	0
SLC14A2	8170	broad.mit.edu	37	18	43204774	43204774	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:43204774G>A	uc010dnj.2	+	3	466	c.145G>A	c.(145-147)GAA>AAA	p.E49K	SLC14A2_uc002lbb.2_Missense_Mutation_p.E49K|SLC14A2_uc002lbe.2_Missense_Mutation_p.E49K	NM_007163	NP_009094	Q15849	UT2_HUMAN	solute carrier family 14 (urea transporter),	49						apical plasma membrane|integral to membrane|membrane fraction	protein binding|urea transmembrane transporter activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)|skin(1)	4						AATGCCTGAAGAAAAGGTGAG	0.557													14	34					0	0	0.004990	0	0
SLC14A2	8170	broad.mit.edu	37	18	43247946	43247946	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:43247946C>T	uc010dnj.2	+	15	2187	c.1866C>T	c.(1864-1866)ACC>ACT	p.T622T	SLC14A2_uc002lbe.2_Silent_p.T622T	NM_007163	NP_009094	Q15849	UT2_HUMAN	solute carrier family 14 (urea transporter),	622						apical plasma membrane|integral to membrane|membrane fraction	protein binding|urea transmembrane transporter activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)|skin(1)	4						GCCTGGGTACCATCATGTCCA	0.562													38	64					0	0	0.005524	0	0
PSTPIP2	9050	broad.mit.edu	37	18	43591177	43591177	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:43591177G>A	uc002lbp.3	-	5	420	c.324C>T	c.(322-324)TTC>TTT	p.F108F	PSTPIP2_uc002lbq.3_Silent_p.F108F	NM_024430	NP_077748	Q9H939	PPIP2_HUMAN	proline-serine-threonine phosphatase interacting	108	Potential.					membrane				ovary(1)	1						GCTTTTCCCTGAATTCTTCCA	0.373													46	87					0	0	0.014410	0	0
RNF165	494470	broad.mit.edu	37	18	44030681	44030681	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:44030681C>T	uc002lcb.1	+	6	786	c.735C>T	c.(733-735)CTC>CTT	p.L245L	RNF165_uc002lby.1_Silent_p.L178L|RNF165_uc010dnn.1_Silent_p.L41L	NM_152470	NP_689683	Q6ZSG1	RN165_HUMAN	ring finger protein 165	245							zinc ion binding				0				READ - Rectum adenocarcinoma(1;0.0873)		TGCTGCAGCTCGAGGACAGGT	0.517													14	41					0	0	0.003163	0	0
ST8SIA5	29906	broad.mit.edu	37	18	44268761	44268761	+	Missense_Mutation	SNP	C	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:44268761C>G	uc002lcj.1	-	4	1001	c.433G>C	c.(433-435)GAG>CAG	p.E145Q	ST8SIA5_uc002lci.1_5'UTR|ST8SIA5_uc010xcy.1_Missense_Mutation_p.E181Q|ST8SIA5_uc010xcz.1_Missense_Mutation_p.E114Q	NM_013305	NP_037437	O15466	SIA8E_HUMAN	ST8 alpha-N-acetyl-neuraminide	145	Lumenal (Potential).				glycosphingolipid biosynthetic process|protein glycosylation	integral to Golgi membrane				upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)	3						CGGAAGATCTCCTGGTTGATG	0.597													29	51					0	0	0.012213	0	0
TCEB3C	162699	broad.mit.edu	37	18	44554621	44554621	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:44554621C>T	uc010xdb.1	-	1	1829	c.1593G>A	c.(1591-1593)CTG>CTA	p.L531L	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lco.2_Intron|KATNAL2_uc002lcp.3_Intron	NM_145653	NP_663628	Q8NG57	ELOA3_HUMAN	transcription elongation factor B polypeptide	531					regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane|nucleus	DNA binding				0						CCTTGGCCATCAGCGGGGCCA	0.368													12	382					0	0	0.002450	0	0
TCEB3C	162699	broad.mit.edu	37	18	44555032	44555032	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:44555032C>T	uc010xdb.1	-	1	1418	c.1182G>A	c.(1180-1182)AGG>AGA	p.R394R	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lco.2_Intron|KATNAL2_uc002lcp.3_Intron	NM_145653	NP_663628	Q8NG57	ELOA3_HUMAN	transcription elongation factor B polypeptide	394	Activation domain (By similarity).				regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane|nucleus	DNA binding				0						GGCAATGAATCCTCCATAATT	0.582													10	513					0	0	0.002450	0	0
TCEB3C	162699	broad.mit.edu	37	18	44555043	44555043	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:44555043C>T	uc010xdb.1	-	1	1407	c.1171G>A	c.(1171-1173)GAA>AAA	p.E391K	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lco.2_Intron|KATNAL2_uc002lcp.3_Intron	NM_145653	NP_663628	Q8NG57	ELOA3_HUMAN	transcription elongation factor B polypeptide	391	Activation domain (By similarity).				regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane|nucleus	DNA binding				0						CTCCATAATTCATCTGTCTCT	0.572													13	682					0	0	0.003163	0	0
TCEB3B	51224	broad.mit.edu	37	18	44559744	44559744	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:44559744C>T	uc002lcr.1	-	1	2245	c.1892G>A	c.(1891-1893)GGA>GAA	p.G631E	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lco.2_Intron|KATNAL2_uc002lcp.3_Intron	NM_016427	NP_057511	Q8IYF1	ELOA2_HUMAN	elongin A2	631	Activation domain (By similarity).				regulation of transcription elongation, DNA-dependent|transcription from RNA polymerase II promoter	integral to membrane|nucleus	DNA binding			ovary(2)|large_intestine(1)|pancreas(1)	4						GGGGTTGTTTCCACGTGCAGA	0.522													32	85					0	0	0.010818	0	0
TCEB3B	51224	broad.mit.edu	37	18	44561247	44561247	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:44561247C>T	uc002lcr.1	-	1	742	c.389G>A	c.(388-390)CGG>CAG	p.R130Q	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lco.2_Intron|KATNAL2_uc002lcp.3_Intron	NM_016427	NP_057511	Q8IYF1	ELOA2_HUMAN	elongin A2	130					regulation of transcription elongation, DNA-dependent|transcription from RNA polymerase II promoter	integral to membrane|nucleus	DNA binding			ovary(2)|large_intestine(1)|pancreas(1)	4						GCGTGCTGTCCGTCTGTGCTC	0.637													18	106					0	0	0.007413	0	0
TCEB3B	51224	broad.mit.edu	37	18	44561506	44561506	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:44561506G>A	uc002lcr.1	-	1	483	c.130C>T	c.(130-132)CTG>TTG	p.L44L	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lco.2_Intron|KATNAL2_uc002lcp.3_Intron	NM_016427	NP_057511	Q8IYF1	ELOA2_HUMAN	elongin A2	44	TFIIS N-terminal.				regulation of transcription elongation, DNA-dependent|transcription from RNA polymerase II promoter	integral to membrane|nucleus	DNA binding			ovary(2)|large_intestine(1)|pancreas(1)	4						GTCTCCGCCAGGATGTCTGCC	0.572													4	15					0	0	0.009096	0	0
ZBTB7C	201501	broad.mit.edu	37	18	45567095	45567095	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:45567095C>T	uc002lda.2	-	1	400	c.384G>A	c.(382-384)GAG>GAA	p.E128E	ZBTB7C_uc002ldb.2_Silent_p.E128E|ZBTB7C_uc010dnu.2_Silent_p.E137E|ZBTB7C_uc010dnv.2_Silent_p.E150E|ZBTB7C_uc010dnw.2_Silent_p.E128E|ZBTB7C_uc010dnx.1_Silent_p.E128E|ZBTB7C_uc010dny.1_Silent_p.E128E|ZBTB7C_uc010dnz.1_Silent_p.E150E|ZBTB7C_uc010dob.1_Silent_p.E128E|ZBTB7C_uc010doc.1_Silent_p.E137E|ZBTB7C_uc010dod.1_Silent_p.E150E|ZBTB7C_uc010doe.1_Silent_p.E128E|ZBTB7C_uc010dof.1_Silent_p.E128E|ZBTB7C_uc010dog.1_Silent_p.E128E|ZBTB7C_uc010doh.1_Silent_p.E137E|ZBTB7C_uc010doi.1_Silent_p.E128E|ZBTB7C_uc010doj.1_Silent_p.E137E|ZBTB7C_uc010dok.1_Silent_p.E177E|ZBTB7C_uc010dol.1_Silent_p.E137E|ZBTB7C_uc010doa.1_Silent_p.E150E|ZBTB7C_uc010don.1_Silent_p.E136E|ZBTB7C_uc010doo.1_Silent_p.E128E|ZBTB7C_uc010dop.1_Silent_p.E128E|ZBTB7C_uc010doq.1_Silent_p.E137E|ZBTB7C_uc010dor.1_Silent_p.E150E|ZBTB7C_uc010dos.1_Silent_p.E128E|ZBTB7C_uc010dot.1_Silent_p.E128E|ZBTB7C_uc010dou.1_Silent_p.E137E|ZBTB7C_uc010dom.1_Silent_p.E137E	NM_001039360	NP_001034449	A1YPR0	ZBT7C_HUMAN	zinc finger and BTB domain containing 7C	128	Glu-rich.					intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1						cccccCCAGGCTCCATGATCT	0.308													5	19					0	0	0.000602	0	0
LIPG	9388	broad.mit.edu	37	18	47110052	47110052	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:47110052G>A	uc002ldv.2	+	8	1536	c.1284G>A	c.(1282-1284)AAG>AAA	p.K428K	LIPG_uc010xdh.1_Silent_p.K354K	NM_006033	NP_006024	Q9Y5X9	LIPE_HUMAN	endothelial lipase precursor	428	PLAT.				cholesterol homeostasis|high-density lipoprotein particle remodeling|phospholipid catabolic process|phospholipid homeostasis|positive regulation of cholesterol transport|positive regulation of high-density lipoprotein particle clearance|reverse cholesterol transport	extracellular space	heparin binding|lipoprotein lipase activity|phospholipase A1 activity|protein binding|triglyceride lipase activity			ovary(1)|skin(1)	2						ACCTGTGGAAGGAGTTTCGCA	0.587													8	28					0	0	0.003080	0	0
ACAA2	10449	broad.mit.edu	37	18	47323960	47323960	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:47323960G>A	uc002ldw.3	-	3	585	c.188C>T	c.(187-189)TCT>TTT	p.S63F	ACAA2_uc002ldx.3_Missense_Mutation_p.S60F	NM_006111	NP_006102	P42765	THIM_HUMAN	acetyl-coenzyme A acyltransferase 2	63					anti-apoptosis|cholesterol biosynthetic process		acetyl-CoA C-acyltransferase activity|protein binding			ovary(1)	1						AGCATCTGAAGAACTCTAGAA	0.373													8	16					0	0	0.003080	0	0
MYO5B	4645	broad.mit.edu	37	18	47421509	47421510	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:47421509_47421510GG>AT	uc002leb.2	-	22	3134_3135	c.2846_2847CC>AT	c.(2845-2847)TCC>TAT	p.S949Y	MYO5B_uc002lea.2_Missense_Mutation_p.S90Y	NM_001080467	NP_001073936	Q9ULV0	MYO5B_HUMAN	myosin VB	949	Potential.				protein transport	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				READ - Rectum adenocarcinoma(32;0.103)		AGGTGGTCACGGACAACTGCTC	0.515													16	42					0	0	0.004672	0	0
MYO5B	4645	broad.mit.edu	37	18	47432877	47432877	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:47432877G>A	uc002leb.2	-	19	2614	c.2326C>T	c.(2326-2328)CGG>TGG	p.R776W		NM_001080467	NP_001073936	Q9ULV0	MYO5B_HUMAN	myosin VB	776	IQ 1.				protein transport	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				READ - Rectum adenocarcinoma(32;0.103)		AGCCATCCCCGGACAGTTTTC	0.592													9	40					0	0	0.010729	0	0
MYO5B	4645	broad.mit.edu	37	18	47488650	47488650	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:47488650C>T	uc002leb.2	-	12	1819	c.1531G>A	c.(1531-1533)GAT>AAT	p.D511N	MYO5B_uc002lec.1_Missense_Mutation_p.D510N	NM_001080467	NP_001073936	Q9ULV0	MYO5B_HUMAN	myosin VB	511	Myosin head-like.				protein transport	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				READ - Rectum adenocarcinoma(32;0.103)		CATTCTTCATCCAACAGGTCC	0.388													31	36					0	0	0.013726	0	0
MYO5B	4645	broad.mit.edu	37	18	47563306	47563306	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:47563306G>A	uc002leb.2	-	4	657	c.369C>T	c.(367-369)GTC>GTT	p.V123V	MYO5B_uc002lec.1_Silent_p.V122V	NM_001080467	NP_001073936	Q9ULV0	MYO5B_HUMAN	myosin VB	123	Myosin head-like.				protein transport	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				READ - Rectum adenocarcinoma(32;0.103)		AGGTATAGATGACATCTTGTC	0.473													17	30					0	0	0.004007	0	0
MAPK4	5596	broad.mit.edu	37	18	48255619	48255619	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:48255619G>A	uc002lev.2	+	6	2159	c.1159G>A	c.(1159-1161)GCG>ACG	p.A387T	MAPK4_uc010xdm.1_Missense_Mutation_p.A176T|MAPK4_uc010doz.2_3'UTR	NM_002747	NP_002738	P31152	MK04_HUMAN	mitogen-activated protein kinase 4	387					cell cycle		ATP binding|MAP kinase activity			lung(4)|skin(2)	6		Colorectal(6;0.0297)		Colorectal(21;0.156)		CGCGGGTTCGGCGCCACTGGC	0.697													6	22					0	0	0.001168	0	0
MRO	83876	broad.mit.edu	37	18	48327874	48327874	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:48327874C>T	uc002lew.3	-	6	724	c.430G>A	c.(430-432)GAG>AAG	p.E144K	MRO_uc010xdn.1_Intron|MRO_uc010dpa.2_Missense_Mutation_p.E158K|MRO_uc010dpb.2_Intron|MRO_uc010dpc.2_Intron|MRO_uc002lex.3_Missense_Mutation_p.E144K	NM_031939	NP_114145	Q9BYG7	MSTRO_HUMAN	maestro isoform a	144	HEAT.					nucleolus	binding				0		Colorectal(6;0.0596)		Colorectal(21;0.082)		CTGTCGTTCTCCTGCGGTCCC	0.463													29	128					0	0	0.003271	0	0
DCC	1630	broad.mit.edu	37	18	50278677	50278677	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:50278677C>T	uc002lfe.1	+	2	932	c.345C>T	c.(343-345)TAC>TAT	p.Y115Y	DCC_uc010xdr.1_5'UTR	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	115	Extracellular (Potential).|Ig-like C2-type 1.				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		AGGGACTTTACCAATGTGAGG	0.393													30	69					0	0	0.003755	0	0
DCC	1630	broad.mit.edu	37	18	50592432	50592432	+	Missense_Mutation	SNP	G	A	A	rs140711456	by1000genomes	TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:50592432G>A	uc002lfe.1	+	7	1744	c.1157G>A	c.(1156-1158)CGG>CAG	p.R386Q	DCC_uc010xdr.1_Missense_Mutation_p.R234Q|DCC_uc010dpf.1_Missense_Mutation_p.R41Q	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	386	Extracellular (Potential).|Ig-like C2-type 4.				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		AGCAACTTACGGATACTTGGG	0.418													27	70					0	0	0.006320	0	0
DCC	1630	broad.mit.edu	37	18	50592482	50592482	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:50592482G>A	uc002lfe.1	+	7	1794	c.1207G>A	c.(1207-1209)GAA>AAA	p.E403K	DCC_uc010xdr.1_Missense_Mutation_p.E251K|DCC_uc010dpf.1_Missense_Mutation_p.E58K	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	403	Extracellular (Potential).|Ig-like C2-type 4.				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		ATGTGTGGCTGAAAATGAGGC	0.438													19	45					0	0	0.007413	0	0
DCC	1630	broad.mit.edu	37	18	51053082	51053082	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:51053082C>T	uc002lfe.1	+	28	4794	c.4207C>T	c.(4207-4209)CCT>TCT	p.P1403S	DCC_uc010dpf.1_Missense_Mutation_p.P1036S	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	1403	Cytoplasmic (Potential).				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		GCCAACAGCCCCTGAAGTGTC	0.502													13	38					0	0	0.001855	0	0
C18orf54	162681	broad.mit.edu	37	18	51904574	51904574	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:51904574C>T	uc002lfn.3	+	8	1193	c.1077C>T	c.(1075-1077)GAC>GAT	p.D359D	C18orf54_uc002lfo.3_Silent_p.D520D	NM_173529	NP_775800	Q8IYD9	CR054_HUMAN	hypothetical protein LOC162681 precursor	359						extracellular region				ovary(1)|skin(1)	2				Colorectal(16;0.0206)|READ - Rectum adenocarcinoma(59;0.186)		GCCTGAGAGACCTGGTTGATG	0.378													6	13					0	0	0.004482	0	0
NEDD4L	23327	broad.mit.edu	37	18	56056398	56056398	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:56056398C>T	uc002lgy.2	+	28	2903	c.2629C>T	c.(2629-2631)CAC>TAC	p.H877Y	NEDD4L_uc002lgz.2_Missense_Mutation_p.H813Y|NEDD4L_uc002lgx.2_Missense_Mutation_p.H857Y|NEDD4L_uc010xee.1_Missense_Mutation_p.H756Y|NEDD4L_uc002lhc.2_Missense_Mutation_p.H869Y|NEDD4L_uc002lhd.2_Missense_Mutation_p.H756Y|NEDD4L_uc002lhb.2_Missense_Mutation_p.H736Y|NEDD4L_uc002lhe.2_Missense_Mutation_p.H849Y|NEDD4L_uc002lhf.2_Missense_Mutation_p.H736Y|NEDD4L_uc002lhg.2_Missense_Mutation_p.H756Y|NEDD4L_uc002lhh.2_Missense_Mutation_p.H652Y|NEDD4L_uc010dpn.2_Missense_Mutation_p.H80Y	NM_001144967	NP_001138439	Q96PU5	NED4L_HUMAN	neural precursor cell expressed, developmentally	877	HECT.				cellular sodium ion homeostasis|excretion|interspecies interaction between organisms|positive regulation of endocytosis|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|regulation of protein catabolic process|response to metal ion|sodium ion transport|water homeostasis	cytoplasm	protein binding|sodium channel regulator activity|ubiquitin-protein ligase activity			lung(4)	4						CTGCCCAAACCACCCCGTCAT	0.552													8	12					0	0	0.003080	0	0
ALPK2	115701	broad.mit.edu	37	18	56204564	56204564	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:56204564G>A	uc002lhj.3	-	5	3069	c.2855C>T	c.(2854-2856)CCT>CTT	p.P952L	ALPK2_uc002lhk.1_Missense_Mutation_p.P283L	NM_052947	NP_443179	Q86TB3	ALPK2_HUMAN	heart alpha-kinase	952							ATP binding|protein serine/threonine kinase activity			ovary(7)|skin(5)|lung(1)|central_nervous_system(1)	14						TTGCACTAAAGGATTGTTCTC	0.512													14	27					0	0	0.001855	0	0
CCBE1	147372	broad.mit.edu	37	18	57107039	57107039	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:57107039C>T	uc002lib.2	-	8	855	c.785G>A	c.(784-786)GGA>GAA	p.G262E	CCBE1_uc010dpq.2_Intron|CCBE1_uc002lia.2_Missense_Mutation_p.G115E	NM_133459	NP_597716	Q6UXH8	CCBE1_HUMAN	collagen and calcium binding EGF domains 1	262	Collagen-like 1.				lymphangiogenesis|sprouting angiogenesis|venous blood vessel morphogenesis	collagen	calcium ion binding			skin(2)|ovary(1)	3		Colorectal(73;0.175)				TCCCTTTGGTCCTGGTGAGCC	0.597													9	33					0	0	0.008291	0	0
CDH20	28316	broad.mit.edu	37	18	59221748	59221748	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:59221748C>T	uc010dps.1	+	11	2238	c.2226C>T	c.(2224-2226)TTC>TTT	p.F742F	CDH20_uc002lif.2_Silent_p.F736F	NM_031891	NP_114097	Q9HBT6	CAD20_HUMAN	cadherin 20, type 2 preproprotein	742	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(3)|ovary(1)|pancreas(1)	5		Colorectal(73;0.186)				CACCGCCCTTCGACTCCCTCC	0.642													5	15					0	0	0.000602	0	0
RNF152	220441	broad.mit.edu	37	18	59483292	59483292	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:59483292G>A	uc002lih.1	-	2	817	c.405C>T	c.(403-405)ATC>ATT	p.I135I		NM_173557	NP_775828	Q8N8N0	RN152_HUMAN	ring finger protein 152	135					apoptosis|protein K48-linked ubiquitination	integral to membrane|lysosomal membrane	ubiquitin-protein ligase activity|zinc ion binding			breast(1)	1		Colorectal(73;0.186)				GTTCAGCAGGGATGGTCACCA	0.692													19	35					0	0	0.007413	0	0
TNFRSF11A	8792	broad.mit.edu	37	18	60017110	60017110	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:60017110G>A	uc002lin.2	+	3	261	c.223G>A	c.(223-225)GAA>AAA	p.E75K	TNFRSF11A_uc010dpv.2_Missense_Mutation_p.E75K	NM_003839	NP_003830	Q9Y6Q6	TNR11_HUMAN	tumor necrosis factor receptor superfamily,	75	TNFR-Cys 2.|Extracellular (Potential).				adaptive immune response|cell-cell signaling|circadian temperature homeostasis|monocyte chemotaxis|osteoclast differentiation|positive regulation of cell proliferation|positive regulation of ERK1 and ERK2 cascade via TNFSF11-mediated signaling|positive regulation of fever generation by positive regulation of prostaglandin secretion|positive regulation of JUN kinase activity|positive regulation of NF-kappaB transcription factor activity|response to interleukin-1|response to lipopolysaccharide	external side of plasma membrane|integral to membrane	metal ion binding|tumor necrosis factor receptor activity			breast(2)|lung(1)	3		Colorectal(73;0.188)				TGGCCCGGATGAATACTTGGA	0.423									Paget_Disease_of_Bone				28	87					0	0	0.006320	0	0
SERPINB12	89777	broad.mit.edu	37	18	61228387	61228387	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:61228387G>A	uc010xen.1	+	4	454	c.454G>A	c.(454-456)GAA>AAA	p.E152K	SERPINB12_uc010xeo.1_Missense_Mutation_p.E172K	NM_080474	NP_536722	Q96P63	SPB12_HUMAN	serine (or cysteine) proteinase inhibitor, clade	152					negative regulation of protein catabolic process|regulation of proteolysis	cytoplasm	enzyme binding|serine-type endopeptidase inhibitor activity				0						AAAAAACCCTGAAAAATCCAG	0.373													18	45					0	0	0.006122	0	0
SERPINB12	89777	broad.mit.edu	37	18	61232681	61232681	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:61232681G>A	uc010xen.1	+	6	649	c.649G>A	c.(649-651)GAA>AAA	p.E217K	SERPINB12_uc010xeo.1_Missense_Mutation_p.E237K	NM_080474	NP_536722	Q96P63	SPB12_HUMAN	serine (or cysteine) proteinase inhibitor, clade	217					negative regulation of protein catabolic process|regulation of proteolysis	cytoplasm	enzyme binding|serine-type endopeptidase inhibitor activity				0						ACTACAGAATGAAAACAAGAG	0.483													18	62					0	0	0.007413	0	0
SERPINB4	6318	broad.mit.edu	37	18	61324206	61324206	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:61324206G>A	uc002ljg.2	-	6	653	c.627C>T	c.(625-627)TCC>TCT	p.S209S	SERPINB3_uc002lji.2_Silent_p.S209S|SERPINB3_uc010dqa.2_Intron			P48594	SPB4_HUMAN	SubName: Full=Squamous cell carcinoma antigen 2;	209					immune response|regulation of proteolysis	cytoplasm|extracellular region	protein binding|serine-type endopeptidase inhibitor activity	p.S209Y(1)		ovary(2)|lung(1)	3						TCATCTGTATGGACTTGTATG	0.373													7	18					0	0	0.003080	0	0
SERPINB7	8710	broad.mit.edu	37	18	61468132	61468132	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:61468132G>A	uc002ljl.2	+	7	726	c.630G>A	c.(628-630)CAG>CAA	p.Q210Q	SERPINB7_uc002ljm.2_Silent_p.Q210Q|SERPINB7_uc010xet.1_Silent_p.Q193Q|SERPINB7_uc010dqg.2_Silent_p.Q210Q	NM_001040147	NP_001035237	O75635	SPB7_HUMAN	serine (or cysteine) proteinase inhibitor, clade	210					regulation of proteolysis	cytoplasm	serine-type endopeptidase inhibitor activity			lung(2)|central_nervous_system(1)	3		Esophageal squamous(42;0.129)				TGATGCATCAGGAACGGAAGT	0.393													26	53					0	0	0.008361	0	0
SERPINB2	5055	broad.mit.edu	37	18	61569035	61569035	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:61569035G>A	uc010xeu.1	+	7	930	c.597G>A	c.(595-597)GTG>GTA	p.V199V	SERPINB2_uc002ljo.2_Silent_p.V199V|SERPINB2_uc010dqh.2_Silent_p.V129V|SERPINB2_uc002ljp.1_Silent_p.V4V|SERPINB2_uc002ljq.1_Silent_p.V4V	NM_001143818	NP_001137290	P05120	PAI2_HUMAN	serine (or cysteine) proteinase inhibitor, clade	199					anti-apoptosis|blood coagulation|fibrinolysis|regulation of proteolysis	extracellular space|Golgi apparatus|plasma membrane	serine-type endopeptidase inhibitor activity			lung(1)|skin(1)	2		Esophageal squamous(42;0.131)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)|Urokinase(DB00013)	TGGTCCTGGTGAATGCTGTCT	0.378													20	54					0	0	0.003330	0	0
CDH7	1005	broad.mit.edu	37	18	63430235	63430235	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:63430235C>T	uc002ljz.2	+	2	482	c.157C>T	c.(157-159)CAG>TAG	p.Q53*	CDH7_uc002lka.2_Nonsense_Mutation_p.Q53*|CDH7_uc002lkb.2_Nonsense_Mutation_p.Q53*	NM_033646	NP_387450	Q9ULB5	CADH7_HUMAN	cadherin 7, type 2 preproprotein	53	Extracellular (Potential).|Cadherin 1.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|pancreas(1)|skin(1)	4		Esophageal squamous(42;0.129)				GGTGTGGAATCAGTTCTTTGT	0.468													4	30					0	0	0.009096	0	0
CDH7	1005	broad.mit.edu	37	18	63492003	63492003	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:63492003G>A	uc002ljz.2	+	6	1242	c.917G>A	c.(916-918)GGT>GAT	p.G306D	CDH7_uc002lka.2_Missense_Mutation_p.G306D|CDH7_uc002lkb.2_Missense_Mutation_p.G306D	NM_033646	NP_387450	Q9ULB5	CADH7_HUMAN	cadherin 7, type 2 preproprotein	306	Extracellular (Potential).|Cadherin 3.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|pancreas(1)|skin(1)	4		Esophageal squamous(42;0.129)				GATGGTGATGGTTTGGGCATT	0.368													16	37					0	0	0.006122	0	0
CCDC102B	79839	broad.mit.edu	37	18	66504003	66504003	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:66504003G>A	uc002lkk.2	+	4	226	c.3G>A	c.(1-3)ATG>ATA	p.M1I	CCDC102B_uc002lki.2_Missense_Mutation_p.M1I|CCDC102B_uc002lkj.1_Missense_Mutation_p.M1I	NM_001093729	NP_001087198	Q68D86	C102B_HUMAN	coiled-coil domain containing 102B	1										ovary(1)|lung(1)|skin(1)	3		Esophageal squamous(42;0.0559)|Colorectal(73;0.0604)				AAATAAATATGAATTTAGATT	0.358													8	25					0	0	0.006214	0	0
CBLN2	147381	broad.mit.edu	37	18	70205891	70205891	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:70205891G>A	uc002lku.2	-	3	709	c.474C>T	c.(472-474)ATC>ATT	p.I158I	CBLN2_uc002lkv.2_Silent_p.I158I	NM_182511	NP_872317	Q8IUK8	CBLN2_HUMAN	cerebellin 2 precursor	158	C1q.					integral to membrane					0		Esophageal squamous(42;0.131)				TACCCACCTGGATGGTTTGTC	0.458													18	66					0	0	0.010504	0	0
FBXO15	201456	broad.mit.edu	37	18	71740883	71740883	+	Missense_Mutation	SNP	G	A	A	rs146975565		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:71740883G>A	uc002lle.2	-	10	1454	c.1118C>T	c.(1117-1119)TCG>TTG	p.S373L	FBXO15_uc002lld.2_RNA|FBXO15_uc002llf.2_Missense_Mutation_p.S449L	NM_152676	NP_689889	Q8NCQ5	FBX15_HUMAN	F-box protein 15 isoform 1	373										ovary(2)|pancreas(1)	3		Esophageal squamous(42;0.103)|Prostate(75;0.173)		BRCA - Breast invasive adenocarcinoma(31;0.143)		TGTGGCAGGCGATCTCAGGCA	0.502													23	127					0	0	0.004656	0	0
C18orf62	284274	broad.mit.edu	37	18	73130767	73130767	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:73130767C>T	uc002lma.1	-	2	305	c.234G>A	c.(232-234)TGG>TGA	p.W78*	C18orf62_uc010dqw.1_Intron|C18orf62_uc002lmb.1_RNA	NM_001037331	NP_001032408	Q3B7S5	CR062_HUMAN	hypothetical protein LOC284274	78						integral to membrane					0		Esophageal squamous(42;0.131)|Prostate(75;0.155)		OV - Ovarian serous cystadenocarcinoma(15;6.21e-06)		tggcccttttccagtcttcag	0.109													40	43					0	0	0.014410	0	0
ZNF516	9658	broad.mit.edu	37	18	74091392	74091392	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:74091392C>T	uc010dqx.1	-	3	2913	c.2678G>A	c.(2677-2679)GGC>GAC	p.G893D	ZNF516_uc002lme.2_RNA|ZNF516_uc002lmd.2_RNA	NM_014643	NP_055458	Q92618	ZN516_HUMAN	zinc finger protein 516	893					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Prostate(75;0.0869)|Esophageal squamous(42;0.129)		OV - Ovarian serous cystadenocarcinoma(15;7.64e-06)|BRCA - Breast invasive adenocarcinoma(31;0.238)		TGGCTCCTGGCCGTGACAAGG	0.682													29	40					0	0	0.008361	0	0
NFATC1	4772	broad.mit.edu	37	18	77170528	77170528	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr18:77170528C>T	uc010xfg.1	+	2	706	c.253C>T	c.(253-255)CAC>TAC	p.H85Y	NFATC1_uc002lnc.1_Missense_Mutation_p.H85Y|NFATC1_uc010xff.1_Missense_Mutation_p.H85Y|NFATC1_uc002lnd.2_Missense_Mutation_p.H85Y|NFATC1_uc002lne.2_Intron|NFATC1_uc010xfh.1_Missense_Mutation_p.H85Y|NFATC1_uc010xfi.1_Missense_Mutation_p.H72Y|NFATC1_uc010xfj.1_Intron|NFATC1_uc002lnf.2_Missense_Mutation_p.H72Y|NFATC1_uc002lng.2_Missense_Mutation_p.H72Y|NFATC1_uc010xfk.1_Missense_Mutation_p.H72Y	NM_006162	NP_006153	O95644	NFAC1_HUMAN	nuclear factor of activated T-cells, cytosolic	85					intracellular signal transduction|positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|nucleus	FK506 binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			large_intestine(1)|ovary(1)	2		Esophageal squamous(42;0.0157)|Melanoma(33;0.144)		OV - Ovarian serous cystadenocarcinoma(15;3.73e-07)|BRCA - Breast invasive adenocarcinoma(31;0.0257)		GCCGGCGGATCACCCCTCGGG	0.726													19	28					0	0	0.007413	0	0
MIER2	54531	broad.mit.edu	37	19	307485	307485	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:307485G>A	uc002lok.1	-	13	1259	c.1250C>T	c.(1249-1251)GCC>GTC	p.A417V		NM_017550	NP_060020	Q8N344	MIER2_HUMAN	mesoderm induction early response 1, family	417					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding				0		all_cancers(10;1.05e-30)|all_epithelial(18;3.04e-19)|Acute lymphoblastic leukemia(61;4.36e-14)|all_hematologic(61;4.84e-09)|Lung NSC(49;2.49e-05)|all_lung(49;4.36e-05)|Breast(49;0.000304)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TCCATCAGAGGCCACTCCGGG	0.672													5	11					0	0	0.000602	0	0
THEG	51298	broad.mit.edu	37	19	375875	375875	+	Silent	SNP	G	A	A	rs143456454		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:375875G>A	uc002lol.2	-	1	135	c.96C>T	c.(94-96)CTC>CTT	p.L32L	THEG_uc002lom.2_Silent_p.L32L	NM_016585	NP_057669	Q9P2T0	THEG_HUMAN	Theg homolog isoform 1	32					cell differentiation|chaperone-mediated protein complex assembly|multicellular organismal development|spermatogenesis	nucleus	protein binding			ovary(1)	1		all_cancers(10;1.13e-36)|all_epithelial(18;1.46e-23)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.1e-06)|all_lung(49;1.55e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CAGAGCTCTGGAGGCCACGGG	0.662													12	31					0	0	0.013537	0	0
THEG	51298	broad.mit.edu	37	19	375932	375932	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:375932G>A	uc002lol.2	-	1	78	c.39C>T	c.(37-39)CCC>CCT	p.P13P	THEG_uc002lom.2_Silent_p.P13P	NM_016585	NP_057669	Q9P2T0	THEG_HUMAN	Theg homolog isoform 1	13					cell differentiation|chaperone-mediated protein complex assembly|multicellular organismal development|spermatogenesis	nucleus	protein binding			ovary(1)	1		all_cancers(10;1.13e-36)|all_epithelial(18;1.46e-23)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.1e-06)|all_lung(49;1.55e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CCTCAGAGCTGGGCTGGTTCC	0.682													4	27					0	0	0.000602	0	0
RNF126	55658	broad.mit.edu	37	19	648902	648902	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:648902G>A	uc010drs.2	-	7	756	c.650C>T	c.(649-651)CCC>CTC	p.P217L	RNF126_uc002lpi.2_Missense_Mutation_p.P41L	NM_194460	NP_919442	Q9BV68	RN126_HUMAN	ring finger protein 126	217							protein binding|zinc ion binding				0		all_epithelial(18;2.78e-22)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;3.55e-06)|all_lung(49;5.41e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CTCAGTGACGGGGACGGTGGG	0.368													10	26					0	0	0.006214	0	0
MED16	10025	broad.mit.edu	37	19	880010	880010	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:880010G>A	uc002lqd.1	-	8	1431	c.1280C>T	c.(1279-1281)CCC>CTC	p.P427L	MED16_uc010drw.1_Missense_Mutation_p.P252L|MED16_uc002lqe.2_Missense_Mutation_p.P416L|MED16_uc002lqf.2_Missense_Mutation_p.P416L|MED16_uc010xfv.1_Intron|MED16_uc010xfw.1_Missense_Mutation_p.P416L|MED16_uc010xfx.1_Missense_Mutation_p.P272L|MED16_uc010xfy.1_Intron	NM_005481	NP_005472	Q9Y2X0	MED16_HUMAN	mediator complex subunit 16	427					androgen receptor signaling pathway|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	receptor activity|thyroid hormone receptor binding|thyroid hormone receptor coactivator activity|vitamin D receptor binding				0		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;6.59e-06)|all_lung(49;9.97e-06)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GTGGACGGCGGGGCCCGCGGT	0.687													7	15					0	0	0.003080	0	0
ABCA7	10347	broad.mit.edu	37	19	1062201	1062201	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:1062201C>T	uc002lqw.3	+	42	5832	c.5601C>T	c.(5599-5601)CTC>CTT	p.L1867L	ABCA7_uc002lqy.2_Silent_p.L320L|ABCA7_uc010dsc.2_RNA	NM_019112	NP_061985	Q8IZY2	ABCA7_HUMAN	ATP-binding cassette, sub-family A, member 7	1867	ABC transporter 2.				phagocytosis|transmembrane transport	ATP-binding cassette (ABC) transporter complex|endosome membrane|Golgi membrane|integral to membrane|plasma membrane	ATP binding|ATPase activity|transporter activity			pancreas(7)|ovary(1)|central_nervous_system(1)	9		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.04e-05)|all_lung(49;1.53e-05)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CTGCGCACCTCAGCATGGGAT	0.682													27	191					0	0	0.003954	0	0
DAZAP1	26528	broad.mit.edu	37	19	1434803	1434803	+	Silent	SNP	C	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:1434803C>A	uc002lsn.2	+	12	1305	c.1116C>A	c.(1114-1116)TCC>TCA	p.S372S	DAZAP1_uc002lsm.2_3'UTR|DAZAP1_uc002lso.2_Silent_p.S371S|DAZAP1_uc002lsl.1_Silent_p.S371S	NM_018959	NP_061832	Q96EP5	DAZP1_HUMAN	DAZ associated protein 1 isoform b	372	Pro-rich.				cell differentiation|multicellular organismal development|spermatogenesis	cytoplasm|nucleus	nucleotide binding|RNA binding			breast(1)	1		Acute lymphoblastic leukemia(61;3.02e-13)|all_hematologic(61;4.32e-09)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		AGCCTCCTTCCTACGGGGGTC	0.572													11	33					0.00136819	0.00145966	0.013537	1	0
ATP8B3	148229	broad.mit.edu	37	19	1802530	1802530	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:1802530C>T	uc002ltw.2	-	11	1253	c.1019G>A	c.(1018-1020)AGG>AAG	p.R340K	ATP8B3_uc002ltv.2_Missense_Mutation_p.R287K|ATP8B3_uc002ltx.2_RNA|ATP8B3_uc002lty.1_Missense_Mutation_p.R88K|ATP8B3_uc002ltz.1_Missense_Mutation_p.R287K	NM_138813	NP_620168	O60423	AT8B3_HUMAN	ATPase, class I, type 8B, member 3	340	Cytoplasmic (Potential).				ATP biosynthetic process		ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GTTGCGAATCCTGCAGCCTCG	0.562													5	25					0	0	0.000602	0	0
DIRAS1	148252	broad.mit.edu	37	19	2717669	2717669	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:2717669G>A	uc002lwf.3	-	2	294	c.136C>T	c.(136-138)CAG>TAG	p.Q46*		NM_145173	NP_660156	O95057	DIRA1_HUMAN	DIRAS family, GTP-binding RAS-like 1	46					small GTPase mediated signal transduction	intracellular|plasma membrane	GTP binding|GTPase activity			ovary(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CTGATCACCTGCCGGTAGGTG	0.657													15	25					0	0	0.004990	0	0
TLE2	7089	broad.mit.edu	37	19	3009669	3009669	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:3009669G>A	uc002lww.2	-	13	1307	c.1044C>T	c.(1042-1044)CCC>CCT	p.P348P	TLE2_uc010xhb.1_Intron|TLE2_uc010dth.2_Silent_p.P349P|TLE2_uc010xhc.1_Silent_p.P226P|TLE2_uc010dti.2_Silent_p.P362P|TLE2_uc010xhd.1_Silent_p.P256P	NM_003260	NP_003251	Q04725	TLE2_HUMAN	transducin-like enhancer protein 2 isoform 1	348	Pro/Ser-rich.				negative regulation of canonical Wnt receptor signaling pathway|negative regulation of transcription, DNA-dependent|organ morphogenesis|transcription, DNA-dependent|Wnt receptor signaling pathway	nucleus	protein binding|transcription corepressor activity				0				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		ACGTGGTGAAGGGACTGGACA	0.647													5	16					0	0	0.001168	0	0
GNA11	2767	broad.mit.edu	37	19	3119228	3119228	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:3119228C>T	uc002lxd.2	+	6	1002	c.760C>T	c.(760-762)CTG>TTG	p.L254L	uc010xhe.1_5'Flank	NM_002067	NP_002058	P29992	GNA11_HUMAN	guanine nucleotide binding protein (G protein),	254					activation of phospholipase C activity by dopamine receptor signaling pathway|G-protein signaling, coupled to cAMP nucleotide second messenger|platelet activation|protein ADP-ribosylation|regulation of action potential	cytoplasm|heterotrimeric G-protein complex	G-protein beta/gamma-subunit complex binding|G-protein-coupled receptor binding|GTP binding|GTPase activity|signal transducer activity			eye(70)|skin(16)	86		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.79e-05)|OV - Ovarian serous cystadenocarcinoma(105;2.68e-113)|Epithelial(107;1.22e-111)|all cancers(105;5.78e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00141)|STAD - Stomach adenocarcinoma(1328;0.181)		GAGCAAAGCCCTGTTCCGGAC	0.612			Mis		uveal melanoma								7	63					0	0	0.004482	0	0
CELF5	60680	broad.mit.edu	37	19	3293399	3293399	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:3293399C>T	uc002lxm.2	+	12	1450	c.1413C>T	c.(1411-1413)CTC>CTT	p.L471L	CELF5_uc002lxl.1_3'UTR|CELF5_uc010dtj.1_3'UTR|CELF5_uc010xhg.1_3'UTR|CELF5_uc002lxn.2_RNA	NM_021938	NP_068757	Q8N6W0	CELF5_HUMAN	bruno-like 5, RNA binding protein	471	RRM 3.				mRNA processing	cytoplasm|nucleus	nucleotide binding|RNA binding			ovary(2)	2						TGAAGAGGCTCAAAGTCCAGC	0.652													12	37					0	0	0.010729	0	0
HMG20B	10362	broad.mit.edu	37	19	3574473	3574473	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:3574473C>T	uc002lya.2	+	4	308	c.240C>T	c.(238-240)TTC>TTT	p.F80F	HMG20B_uc010dtm.1_3'UTR|HMG20B_uc002lyb.2_5'UTR|HMG20B_uc010xhn.1_Silent_p.F80F	NM_006339	NP_006330	Q9P0W2	HM20B_HUMAN	high-mobility group 20B	80	HMG box.				blood coagulation|cell cycle|chromatin modification	chromosome|nucleoplasm	DNA binding|sequence-specific DNA binding transcription factor activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0025)|STAD - Stomach adenocarcinoma(1328;0.18)		ACGTGCGCTTCCTGAACGAGC	0.642													6	10					0	0	0.003080	0	0
TJP3	27134	broad.mit.edu	37	19	3728436	3728436	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:3728436G>A	uc010xhv.1	+	1	63	c.63G>A	c.(61-63)GAG>GAA	p.E21E	TJP3_uc010xhs.1_Silent_p.E2E|TJP3_uc010xht.1_Intron|TJP3_uc010xhu.1_Silent_p.E11E|TJP3_uc010xhw.1_Silent_p.E21E	NM_014428	NP_055243	O95049	ZO3_HUMAN	tight junction protein 3	2						tight junction	protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0118)|STAD - Stomach adenocarcinoma(1328;0.18)		CTGACATGGAGGAGCTGACCA	0.512													6	22					0	0	0.001984	0	0
CREB3L3	84699	broad.mit.edu	37	19	4157233	4157233	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:4157233C>T	uc002lzl.2	+	3	514	c.398C>T	c.(397-399)TCC>TTC	p.S133F	CREB3L3_uc002lzm.2_Missense_Mutation_p.S123F|CREB3L3_uc010xib.1_Missense_Mutation_p.S124F|CREB3L3_uc010xic.1_Missense_Mutation_p.S124F	NM_032607	NP_115996	Q68CJ9	CR3L3_HUMAN	cAMP responsive element binding protein 3-like	133	Cytoplasmic (Potential).				response to unfolded protein	endoplasmic reticulum membrane|integral to membrane|nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|skin(1)	2				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0232)|STAD - Stomach adenocarcinoma(1328;0.18)		AACTCTTGCTCCACCACAACC	0.622													23	64					0	0	0.003954	0	0
ANKRD24	170961	broad.mit.edu	37	19	4216717	4216717	+	Missense_Mutation	SNP	A	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:4216717A>C	uc010dtt.1	+	18	1836	c.1560A>C	c.(1558-1560)AGA>AGC	p.R520S	ANKRD24_uc002lzs.2_Missense_Mutation_p.R491S|ANKRD24_uc002lzt.2_Missense_Mutation_p.R492S	NM_133475	NP_597732	Q8TF21	ANR24_HUMAN	ankyrin repeat domain 24	520											0				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0233)|STAD - Stomach adenocarcinoma(1328;0.181)		AGGTCCCCAGAGAAGAGGGGG	0.627													3	6					0	0	0.004672	0	0
LRG1	116844	broad.mit.edu	37	19	4538810	4538810	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:4538810G>A	uc002mau.2	-	2	197	c.186C>T	c.(184-186)ATC>ATT	p.I62I	PLIN5_uc002mat.1_Intron	NM_052972	NP_443204	P02750	A2GL_HUMAN	leucine-rich alpha-2-glycoprotein 1 precursor	62						extracellular region|membrane				ovary(1)	1		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0148)|STAD - Stomach adenocarcinoma(1328;0.18)		GGTAGCCGGGGATTTCGGCAG	0.637													16	56					0	0	0.007413	0	0
TICAM1	148022	broad.mit.edu	37	19	4817408	4817408	+	Missense_Mutation	SNP	C	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:4817408C>A	uc002mbi.2	-	2	1233	c.982G>T	c.(982-984)GTC>TTC	p.V328F		NM_182919	NP_891549	Q8IUC6	TCAM1_HUMAN	toll-like receptor adaptor molecule 1	328	Pro-rich.				apoptosis|I-kappaB kinase/NF-kappaB cascade|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|endosome membrane|plasma membrane	protein kinase binding|signal transducer activity			breast(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0139)		TGGTCTTTGACAGAGCAGGGG	0.552													6	68					5.18039e-06	5.54628e-06	0.003080	1	0
PTPRS	5802	broad.mit.edu	37	19	5220313	5220313	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:5220313G>A	uc002mbv.2	-	21	3741	c.3507C>T	c.(3505-3507)TTC>TTT	p.F1169F	PTPRS_uc002mbu.1_Silent_p.F738F|PTPRS_uc010xin.1_Silent_p.F738F|PTPRS_uc002mbw.2_Silent_p.F1147F|PTPRS_uc002mbx.2_Silent_p.F742F|PTPRS_uc002mby.2_Silent_p.F738F	NM_002850	NP_002841	Q13332	PTPRS_HUMAN	protein tyrosine phosphatase, receptor type,	1169	Extracellular (Potential).				cell adhesion	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			large_intestine(2)|ovary(1)|central_nervous_system(1)	4				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0321)|Lung(535;0.182)		GCGGGGTCAGGAATTGGCCTC	0.582													21	26					0	0	0.004656	0	0
SAFB2	9667	broad.mit.edu	37	19	5595504	5595504	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:5595504G>A	uc002mcd.2	-	14	1999	c.1787C>T	c.(1786-1788)TCC>TTC	p.S596F		NM_014649	NP_055464	Q14151	SAFB2_HUMAN	scaffold attachment factor B2	596					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|nucleotide binding|protein binding|RNA binding				0				UCEC - Uterine corpus endometrioid carcinoma (162;0.000228)		CTGACTCTTGGAGCTCTGTTT	0.418													8	21					0	0	0.003080	0	0
TMEM146	257062	broad.mit.edu	37	19	5772804	5772804	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:5772804G>A	uc002mda.2	+	20	1830	c.1769G>A	c.(1768-1770)CGA>CAA	p.R590Q		NM_152784	NP_689997	Q86XM0	TM146_HUMAN	transmembrane protein 146 precursor	590	Extracellular (Potential).					integral to membrane				ovary(1)|central_nervous_system(1)|pancreas(1)	3						CCTAGGTGGCGAAAAGACAGT	0.612													18	79					0	0	0.003330	0	0
FUT3	2525	broad.mit.edu	37	19	5844471	5844472	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:5844471_5844472GG>AA	uc002mdk.2	-	2	476_477	c.379_380CC>TT	c.(379-381)CCG>TTG	p.P127L	FUT3_uc002mdm.2_Missense_Mutation_p.P127L|FUT3_uc002mdj.2_Missense_Mutation_p.P127L|FUT3_uc002mdl.2_Missense_Mutation_p.P127L	NM_001097641	NP_001091110	P21217	FUT3_HUMAN	fucosyltransferase 3	127	Lumenal (Potential).				protein glycosylation	Golgi cisterna membrane|integral to membrane|membrane fraction	3-galactosyl-N-acetylglucosaminide 4-alpha-L-fucosyltransferase activity				0						CTGCCCCTGCGGCCTCGGGGAA	0.599													29	55					0	0	0.004672	0	0
RFX2	5990	broad.mit.edu	37	19	6040144	6040144	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:6040144G>A	uc002meb.2	-	5	638	c.369C>T	c.(367-369)TCC>TCT	p.S123S	RFX2_uc002mec.2_Silent_p.S123S|RFX2_uc010xiy.1_Silent_p.S78S	NM_000635	NP_000626	P48378	RFX2_HUMAN	regulatory factor X2 isoform a	123					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			breast(4)|ovary(1)|skin(1)	6						CCGCTGGCGGGGACGAGGCTG	0.677													22	39					0	0	0.012319	0	0
ACSBG2	81616	broad.mit.edu	37	19	6147520	6147520	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:6147520G>A	uc002mef.1	+	3	358	c.131G>A	c.(130-132)GGA>GAA	p.G44E	ACSBG2_uc002mee.1_5'UTR|ACSBG2_uc002meg.1_Missense_Mutation_p.G44E|ACSBG2_uc002meh.1_Missense_Mutation_p.G44E|ACSBG2_uc002mei.1_5'UTR|ACSBG2_uc010xiz.1_Missense_Mutation_p.G44E	NM_030924	NP_112186	Q5FVE4	ACBG2_HUMAN	bubblegum-related acyl-CoA synthetase 2	44					cell differentiation|fatty acid metabolic process|multicellular organismal development|spermatogenesis	membrane|microsome|mitochondrion	acyl-CoA thioesterase activity|ATP binding|long-chain fatty acid-CoA ligase activity			ovary(1)	1						TCCAAACACGGACCAGGCCAT	0.498													37	87					0	0	0.005524	0	0
GTF2F1	2962	broad.mit.edu	37	19	6387513	6387513	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:6387513G>A	uc002meq.2	-	5	669	c.384C>T	c.(382-384)ACC>ACT	p.T128T	GTF2F1_uc010xjb.1_5'UTR|GTF2F1_uc010xjc.1_Intron	NM_002096	NP_002087	P35269	T2FA_HUMAN	general transcription factor IIF, polypeptide 1,	128					mRNA capping|nuclear mRNA splicing, via spliceosome|positive regulation of transcription, DNA-dependent|positive regulation of viral transcription|response to virus|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|viral reproduction	cell junction|transcription factor TFIIF complex	catalytic activity|DNA binding|phosphatase activator activity|transcription coactivator activity|transcription factor binding				0						CGGGGCACTGGGTGAAGATGT	0.632													25	40					0	0	0.003954	0	0
C3	718	broad.mit.edu	37	19	6697421	6697421	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:6697421C>T	uc002mfm.2	-	21	2792	c.2730G>A	c.(2728-2730)GTG>GTA	p.V910V		NM_000064	NP_000055	P01024	CO3_HUMAN	complement component 3 precursor	910					complement activation, alternative pathway|complement activation, classical pathway|G-protein coupled receptor protein signaling pathway|inflammatory response|positive regulation vascular endothelial growth factor production	extracellular space	endopeptidase inhibitor activity|receptor binding			skin(3)|ovary(1)|pancreas(1)	5				GBM - Glioblastoma multiforme(1328;1.36e-05)|Lung(535;0.00661)		CCTTGACTTCCACTTCCTGCA	0.567													8	39					0	0	0.003080	0	0
VAV1	7409	broad.mit.edu	37	19	6833726	6833726	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:6833726C>T	uc002mfu.1	+	18	1810	c.1713C>T	c.(1711-1713)TTC>TTT	p.F571F	VAV1_uc010xjh.1_Silent_p.F539F|VAV1_uc010dva.1_Silent_p.F571F|VAV1_uc002mfv.1_Silent_p.F516F	NM_005428	NP_005419	P15498	VAV_HUMAN	vav 1 guanine nucleotide exchange factor	571					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|platelet activation|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|T cell costimulation	cytosol|plasma membrane	metal ion binding|protein binding|sequence-specific DNA binding transcription factor activity			lung(4)|ovary(4)|breast(3)|central_nervous_system(2)|kidney(2)|skin(1)	16						CCGTAGATTTCCCAGGAACTA	0.537													45	85					0	0	0.014410	0	0
EMR1	2015	broad.mit.edu	37	19	6897289	6897289	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:6897289G>A	uc002mfw.2	+	4	406	c.368G>A	c.(367-369)GGA>GAA	p.G123E	EMR1_uc010dvc.2_Missense_Mutation_p.G123E|EMR1_uc010dvb.2_Intron|EMR1_uc010xji.1_Intron|EMR1_uc010xjj.1_Missense_Mutation_p.G123E	NM_001974	NP_001965	Q14246	EMR1_HUMAN	egf-like module containing, mucin-like, hormone	123	Extracellular (Potential).|EGF-like 2; calcium-binding (Potential).				cell adhesion|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(3)|lung(1)|skin(1)	5	all_hematologic(4;0.166)					TGGGTCCCAGGAAAGCCGGGC	0.498													16	32					0	0	0.007413	0	0
EMR1	2015	broad.mit.edu	37	19	6904114	6904114	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:6904114C>T	uc002mfw.2	+	8	908	c.870C>T	c.(868-870)GGC>GGT	p.G290G	EMR1_uc010dvc.2_Silent_p.G290G|EMR1_uc010dvb.2_Silent_p.G238G|EMR1_uc010xji.1_Silent_p.G149G|EMR1_uc010xjj.1_Intron	NM_001974	NP_001965	Q14246	EMR1_HUMAN	egf-like module containing, mucin-like, hormone	290	Extracellular (Potential).|EGF-like 6; calcium-binding (Potential).				cell adhesion|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(3)|lung(1)|skin(1)	5	all_hematologic(4;0.166)					ATGCCCTGGGCTCCTACAGCT	0.473													14	38					0	0	0.004990	0	0
EMR1	2015	broad.mit.edu	37	19	6904116	6904116	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:6904116C>T	uc002mfw.2	+	8	910	c.872C>T	c.(871-873)TCC>TTC	p.S291F	EMR1_uc010dvc.2_Missense_Mutation_p.S291F|EMR1_uc010dvb.2_Missense_Mutation_p.S239F|EMR1_uc010xji.1_Missense_Mutation_p.S150F|EMR1_uc010xjj.1_Intron	NM_001974	NP_001965	Q14246	EMR1_HUMAN	egf-like module containing, mucin-like, hormone	291	Extracellular (Potential).|EGF-like 6; calcium-binding (Potential).				cell adhesion|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(3)|lung(1)|skin(1)	5	all_hematologic(4;0.166)					GCCCTGGGCTCCTACAGCTGT	0.468													15	41					0	0	0.006122	0	0
INSR	3643	broad.mit.edu	37	19	7172349	7172349	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:7172349G>A	uc002mgd.1	-	5	1329	c.1220C>T	c.(1219-1221)TCC>TTC	p.S407F	INSR_uc002mge.1_Missense_Mutation_p.S407F|INSR_uc002mgf.2_Missense_Mutation_p.S407F	NM_000208	NP_000199	P06213	INSR_HUMAN	insulin receptor isoform Long precursor	407					activation of MAPK activity|activation of protein kinase B activity|carbohydrate metabolic process|fibroblast growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|glucose homeostasis|heart morphogenesis|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of cell proliferation|positive regulation of developmental growth|positive regulation of DNA replication|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of glycolysis|positive regulation of MAPKKK cascade|positive regulation of mitosis|positive regulation of nitric oxide biosynthetic process|positive regulation of protein kinase B signaling cascade|positive regulation of protein phosphorylation|positive regulation of respiratory burst|protein autophosphorylation|protein heterotetramerization|regulation of embryonic development|regulation of transcription, DNA-dependent|transformation of host cell by virus	caveola|endosome membrane|insulin receptor complex|microsome	ATP binding|GTP binding|insulin binding|insulin receptor activity|insulin receptor substrate binding|insulin-like growth factor I binding|insulin-like growth factor II binding|insulin-like growth factor receptor binding|metal ion binding|phosphatidylinositol 3-kinase binding|PTB domain binding|receptor signaling protein tyrosine kinase activity|SH2 domain binding			ovary(4)|lung(3)|central_nervous_system(2)|large_intestine(1)|stomach(1)|skin(1)	12					Insulin Glargine recombinant(DB00047)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	CCGGAAGAAGGAAAGTGACAC	0.488													52	307					0	0	0.014410	0	0
ARHGEF18	23370	broad.mit.edu	37	19	7518541	7518541	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:7518541C>T	uc002mgi.2	+	7	1733	c.1480C>T	c.(1480-1482)CAG>TAG	p.Q494*	ARHGEF18_uc010xjm.1_Nonsense_Mutation_p.Q336*|ARHGEF18_uc002mgh.2_Nonsense_Mutation_p.Q336*|ARHGEF18_uc002mgj.1_Nonsense_Mutation_p.Q137*	NM_001130955	NP_001124427	Q6ZSZ5	ARHGI_HUMAN	Rho/Rac guanine nucleotide exchange factor 18	494					actin cytoskeleton organization|apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of cell shape|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity			ovary(1)	1		Renal(5;0.0902)				AGACATGCTTCAGCGGCAGCT	0.587													19	49					0	0	0.007413	0	0
FBN3	84467	broad.mit.edu	37	19	8152962	8152962	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:8152962G>A	uc002mjf.2	-	51	6499	c.6478C>T	c.(6478-6480)CTC>TTC	p.L2160F	FBN3_uc002mje.2_5'UTR	NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	2160	EGF-like 34; calcium-binding.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						GTCATCATGAGGCCAGGCTCA	0.627													24	49					0	0	0.002780	0	0
ANGPTL4	51129	broad.mit.edu	37	19	8436279	8436279	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:8436279C>T	uc002mjq.1	+	6	1107	c.912C>T	c.(910-912)CTC>CTT	p.L304L	ANGPTL4_uc002mjr.1_Silent_p.L266L|ANGPTL4_uc010xkc.1_Silent_p.L137L	NM_139314	NP_647475	Q9BY76	ANGL4_HUMAN	angiopoietin-like 4 protein isoform a precursor	304	Fibrinogen C-terminal.			L -> F (in Ref. 1; AAF62868).	angiogenesis|cell differentiation|cellular lipid metabolic process|negative regulation of apoptosis|negative regulation of lipoprotein lipase activity|positive regulation of angiogenesis|response to hypoxia|signal transduction|triglyceride homeostasis	extracellular space|proteinaceous extracellular matrix	enzyme inhibitor activity|receptor binding			ovary(1)	1						GCCTGCAGCTCACTGCACCCG	0.697													12	32					0	0	0.013537	0	0
OR2Z1	284383	broad.mit.edu	37	19	8841458	8841458	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:8841458C>T	uc010xkg.1	+	1	68	c.68C>T	c.(67-69)TCA>TTA	p.S23L		NM_001004699	NP_001004699	Q8NG97	OR2Z1_HUMAN	olfactory receptor, family 2, subfamily Z,	23	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2						CACTCAGGATCACGCCAGCTC	0.527													6	43					0	0	0.001168	0	0
ZNF558	148156	broad.mit.edu	37	19	8922501	8922501	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:8922501G>A	uc002mkn.1	-	6	895	c.665C>T	c.(664-666)TCC>TTC	p.S222F	ZNF558_uc010xkh.1_Missense_Mutation_p.S151F|ZNF558_uc010dwg.1_Missense_Mutation_p.S222F	NM_144693	NP_653294	Q96NG5	ZN558_HUMAN	zinc finger protein 558	222	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			central_nervous_system(1)	1						CAGTCTAAGGGATGAGGGATC	0.408													7	24					0	0	0.001984	0	0
ZNF558	148156	broad.mit.edu	37	19	8931947	8931947	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:8931947G>A	uc002mkn.1	-	3	386	c.156C>T	c.(154-156)TTC>TTT	p.F52F	ZNF558_uc010xkh.1_5'UTR|ZNF558_uc010dwg.1_Silent_p.F52F	NM_144693	NP_653294	Q96NG5	ZN558_HUMAN	zinc finger protein 558	52	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			central_nervous_system(1)	1						CCTCCTGGGTGAACTCCACGG	0.572													21	37					0	0	0.010504	0	0
MUC16	94025	broad.mit.edu	37	19	9013882	9013882	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:9013882C>T	uc002mkp.2	-	33	38712	c.38508G>A	c.(38506-38508)GGG>GGA	p.G12836G	MUC16_uc010xki.1_5'Flank	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	12838	Extracellular (Potential).			Missing (in Ref. 3; AAK74120).	cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TCCCTGAGGTCCCAAGGTCCA	0.483													10	22					0	0	0.013537	0	0
MUC16	94025	broad.mit.edu	37	19	9019338	9019338	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:9019338G>A	uc002mkp.2	-	23	37753	c.37549C>T	c.(37549-37551)CCT>TCT	p.P12517S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	12519	Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GAGGTCCCAGGAGCTGAGAAA	0.483													13	18					0	0	0.004007	0	0
MUC16	94025	broad.mit.edu	37	19	9045613	9045613	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:9045613G>A	uc002mkp.2	-	5	36222	c.36018C>T	c.(36016-36018)ACC>ACT	p.T12006T		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	12008	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TCCCAGGTGTGGTCAGAGGAG	0.393													9	12					0	0	0.008291	0	0
MUC16	94025	broad.mit.edu	37	19	9045877	9045877	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:9045877C>T	uc002mkp.2	-	5	35958	c.35754G>A	c.(35752-35754)TGG>TGA	p.W11918*		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	11920	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TTTCTGTGTTCCAGGAGGTCA	0.493													43	61					0	0	0.011902	0	0
MUC16	94025	broad.mit.edu	37	19	9046043	9046043	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:9046043G>A	uc002mkp.2	-	5	35792	c.35588C>T	c.(35587-35589)CCA>CTA	p.P11863L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	11865	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGTTGAAGTTGGAATCATTGT	0.488													33	86					0	0	0.012213	0	0
MUC16	94025	broad.mit.edu	37	19	9048241	9048241	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:9048241G>A	uc002mkp.2	-	5	33594	c.33390C>T	c.(33388-33390)GCC>GCT	p.A11130A		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	11132	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CATGACTGGTGGCCATTGAAG	0.498													9	50					0	0	0.006214	0	0
MUC16	94025	broad.mit.edu	37	19	9057093	9057093	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:9057093G>A	uc002mkp.2	-	3	30557	c.30353C>T	c.(30352-30354)TCC>TTC	p.S10118F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	10120	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGAAACAGAGGAATATAGTTC	0.473													17	31					0	0	0.004990	0	0
MUC16	94025	broad.mit.edu	37	19	9060940	9060940	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:9060940G>A	uc002mkp.2	-	3	26710	c.26506C>T	c.(26506-26508)CCT>TCT	p.P8836S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	8838	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						ACATCCTCAGGACCTCTGCTC	0.527													35	63					0	0	0.004878	0	0
MUC16	94025	broad.mit.edu	37	19	9062601	9062601	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:9062601G>A	uc002mkp.2	-	3	25049	c.24845C>T	c.(24844-24846)TCC>TTC	p.S8282F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	8284	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TAATGTAGAGGAAACAGGAGA	0.512													5	54					0	0	0.001168	0	0
MUC16	94025	broad.mit.edu	37	19	9063573	9063573	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:9063573G>A	uc002mkp.2	-	3	24077	c.23873C>T	c.(23872-23874)TCA>TTA	p.S7958L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7960	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GCTCATCCATGATACATCCTC	0.453													5	41					0	0	0.000602	0	0
MUC16	94025	broad.mit.edu	37	19	9063963	9063963	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:9063963G>A	uc002mkp.2	-	3	23687	c.23483C>T	c.(23482-23484)TCC>TTC	p.S7828F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7830	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGGGGTCAGGGAGGAAGCTAG	0.542													7	65					0	0	0.003080	0	0
MUC16	94025	broad.mit.edu	37	19	9067342	9067342	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:9067342G>A	uc002mkp.2	-	3	20308	c.20104C>T	c.(20104-20106)CCA>TCA	p.P6702S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	6704	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TCAGGGCCTGGAATGGATGTT	0.478													59	148					0	0	0.014410	0	0
MUC16	94025	broad.mit.edu	37	19	9069097	9069097	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:9069097C>T	uc002mkp.2	-	3	18553	c.18349G>A	c.(18349-18351)GAT>AAT	p.D6117N		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	6119	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AATGTAGGATCATAGTAGGTG	0.493													8	17					0	0	0.004482	0	0
MUC16	94025	broad.mit.edu	37	19	9070394	9070394	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:9070394C>T	uc002mkp.2	-	3	17256	c.17052G>A	c.(17050-17052)ACG>ACA	p.T5684T		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5686	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GAGGTGAACTCGTTACGGGCT	0.502													9	13					0	0	0.008291	0	0
MUC16	94025	broad.mit.edu	37	19	9071371	9071371	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:9071371G>A	uc002mkp.2	-	3	16279	c.16075C>T	c.(16075-16077)CCC>TCC	p.P5359S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5361	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGAGAGGAGGGGATGCTCTGT	0.527													29	43					0	0	0.005443	0	0
MUC16	94025	broad.mit.edu	37	19	9071723	9071723	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:9071723G>A	uc002mkp.2	-	3	15927	c.15723C>T	c.(15721-15723)TCC>TCT	p.S5241S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5243	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTGGCACTGTGGACTTATCAT	0.478													38	74					0	0	0.006230	0	0
MUC16	94025	broad.mit.edu	37	19	9072091	9072091	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:9072091G>A	uc002mkp.2	-	3	15559	c.15355C>T	c.(15355-15357)CCT>TCT	p.P5119S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5121	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TTTATAGAAGGAAAAATTTCC	0.453													30	68					0	0	0.006320	0	0
MUC16	94025	broad.mit.edu	37	19	9072251	9072251	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:9072251G>A	uc002mkp.2	-	3	15399	c.15195C>T	c.(15193-15195)TCC>TCT	p.S5065S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5067	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding	p.S5065Y(1)		lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TCATAGGAGAGGAGAGCTTAT	0.478													34	73					0	0	0.003755	0	0
MUC16	94025	broad.mit.edu	37	19	9072320	9072320	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:9072320G>A	uc002mkp.2	-	3	15330	c.15126C>T	c.(15124-15126)TCC>TCT	p.S5042S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5044	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGGACAGAAAGGAAGAGGGGG	0.478													11	30					0	0	0.010729	0	0
MUC16	94025	broad.mit.edu	37	19	9072763	9072763	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:9072763G>A	uc002mkp.2	-	3	14887	c.14683C>T	c.(14683-14685)CCT>TCT	p.P4895S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	4897	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTCAGTTTAGGAGTCAGGGAG	0.488													67	146					0	0	0.014410	0	0
MUC16	94025	broad.mit.edu	37	19	9073527	9073527	+	Missense_Mutation	SNP	G	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:9073527G>T	uc002mkp.2	-	3	14123	c.13919C>A	c.(13918-13920)TCT>TAT	p.S4640Y		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	4642	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGCATCAAAAGAGGGGACTTC	0.453													10	90					3.07112e-06	3.28926e-06	0.010729	1	0
MUC16	94025	broad.mit.edu	37	19	9073586	9073586	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:9073586G>A	uc002mkp.2	-	3	14064	c.13860C>T	c.(13858-13860)ATC>ATT	p.I4620I		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	4622	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGGAGAGGATGATGTTTGACT	0.478													16	39					0	0	0.003163	0	0
MUC16	94025	broad.mit.edu	37	19	9074665	9074665	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:9074665G>A	uc002mkp.2	-	3	12985	c.12781C>T	c.(12781-12783)CCT>TCT	p.P4261S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	4263	Thr-rich.|Extracellular (Potential).|Ser-rich.				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CCTGGGATAGGAGAATATTCA	0.473													24	58					0	0	0.004656	0	0
MUC16	94025	broad.mit.edu	37	19	9075414	9075414	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:9075414G>A	uc002mkp.2	-	3	12236	c.12032C>T	c.(12031-12033)TCC>TTC	p.S4011F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	4013	Thr-rich.|Extracellular (Potential).|Ser-rich.				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGTCAAGAAGGAATTAGGCTC	0.478													20	33					0	0	0.007413	0	0
MUC16	94025	broad.mit.edu	37	19	9077766	9077766	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:9077766G>A	uc002mkp.2	-	3	9884	c.9680C>T	c.(9679-9681)TCT>TTT	p.S3227F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	3228	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTTCCAAGGAGAATTTCTCAC	0.527													47	122					0	0	0.010771	0	0
MUC16	94025	broad.mit.edu	37	19	9080501	9080501	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:9080501C>T	uc002mkp.2	-	2	9734	c.9530G>A	c.(9529-9531)GGA>GAA	p.G3177E		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	3178	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding	p.A3175fs*111(1)		lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CGTGGAATTTCCTTGTGCTGC	0.493													12	109					0	0	0.002450	0	0
MUC16	94025	broad.mit.edu	37	19	9083076	9083076	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:9083076G>A	uc002mkp.2	-	1	8943	c.8739C>T	c.(8737-8739)TCC>TCT	p.S2913S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	2914	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGGTGTTCAGGGACTGTCCAG	0.488													7	48					0	0	0.003080	0	0
MUC16	94025	broad.mit.edu	37	19	9089120	9089120	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:9089120G>A	uc002mkp.2	-	1	2899	c.2695C>T	c.(2695-2697)CCC>TCC	p.P899S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	899	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TCCATGGTGGGGAATACTGGG	0.512													3	18					0	0	0.004672	0	0
MUC16	94025	broad.mit.edu	37	19	9089446	9089446	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:9089446G>A	uc002mkp.2	-	1	2573	c.2369C>T	c.(2368-2370)TCC>TTC	p.S790F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	790	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGTCAGAGGGGAAGTTGCATT	0.507													71	126					0	0	0.014410	0	0
MUC16	94025	broad.mit.edu	37	19	9089866	9089866	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:9089866G>A	uc002mkp.2	-	1	2153	c.1949C>T	c.(1948-1950)TCC>TTC	p.S650F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	650	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGGAGACACGGAGACTGGGAC	0.552													42	87					0	0	0.009718	0	0
MUC16	94025	broad.mit.edu	37	19	9089986	9089986	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:9089986G>A	uc002mkp.2	-	1	2033	c.1829C>T	c.(1828-1830)TCA>TTA	p.S610L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	610	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TCCTGTCATTGAAATCCCAGT	0.537													14	31					0	0	0.003163	0	0
MUC16	94025	broad.mit.edu	37	19	9090653	9090653	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:9090653C>T	uc002mkp.2	-	1	1366	c.1162G>A	c.(1162-1164)GAA>AAA	p.E388K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	388	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CCCAACCATTCTGAAGCCAAA	0.507													15	28					0	0	0.003163	0	0
MUC16	94025	broad.mit.edu	37	19	9091052	9091052	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:9091052C>T	uc002mkp.2	-	1	967	c.763G>A	c.(763-765)GAA>AAA	p.E255K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	255	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGAATCAGTTCCAGGCTTGTT	0.478													15	33					0	0	0.002450	0	0
OR7G1	125962	broad.mit.edu	37	19	9225996	9225996	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:9225996G>A	uc002mks.1	-	1	444	c.444C>T	c.(442-444)TCC>TCT	p.S148S		NM_001005192	NP_001005192	Q8NGA0	OR7G1_HUMAN	olfactory receptor, family 7, subfamily G,	148	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2						TCATGAACATGGAGAGAAGAA	0.488													22	55					0	0	0.003954	0	0
OR7G1	125962	broad.mit.edu	37	19	9226280	9226280	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:9226280G>A	uc002mks.1	-	1	160	c.160C>T	c.(160-162)CAC>TAC	p.H54Y		NM_001005192	NP_001005192	Q8NGA0	OR7G1_HUMAN	olfactory receptor, family 7, subfamily G,	54	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2						GTGTGGAGGTGGGAGTCAGAG	0.493													46	82					0	0	0.014410	0	0
OR7G3	390883	broad.mit.edu	37	19	9236968	9236968	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:9236968C>T	uc010xkl.1	-	1	659	c.659G>A	c.(658-660)CGA>CAA	p.R220Q		NM_001001958	NP_001001958	Q8NG95	OR7G3_HUMAN	olfactory receptor, family 7, subfamily G,	220	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						GGAGACAATTCGTGTGTAAGA	0.423													34	85					0	0	0.012213	0	0
OR7D2	162998	broad.mit.edu	37	19	9296697	9296697	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:9296697G>A	uc002mkz.1	+	1	428	c.240G>A	c.(238-240)AAG>AAA	p.K80K		NM_175883	NP_787079	Q96RA2	OR7D2_HUMAN	olfactory receptor, family 7, subfamily D,	80	Extracellular (Potential).				regulation of transcription, DNA-dependent|sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|upper_aerodigestive_tract(1)	3						TCGTCCCCAAGATGCTGGTGA	0.512													40	79					0	0	0.008740	0	0
OR7D4	125958	broad.mit.edu	37	19	9324650	9324650	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:9324650G>A	uc002mla.1	-	1	864	c.864C>T	c.(862-864)TTC>TTT	p.F288F		NM_001005191	NP_001005191	Q8NG98	OR7D4_HUMAN	olfactory receptor, family 7, subfamily D,	288	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4						GGCTGTAGATGAAGGGGTTCA	0.557													16	45					0	0	0.006122	0	0
OR7D4	125958	broad.mit.edu	37	19	9325025	9325025	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:9325025C>T	uc002mla.1	-	1	489	c.489G>A	c.(487-489)ATG>ATA	p.M163I		NM_001005191	NP_001005191	Q8NG98	OR7D4_HUMAN	olfactory receptor, family 7, subfamily D,	163	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4						TCAACCTCTTCATCAGTAGAA	0.507													26	38					0	0	0.003330	0	0
OR7E24	26648	broad.mit.edu	37	19	9362580	9362580	+	Missense_Mutation	SNP	G	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:9362580G>C	uc002mlb.1	+	1	861	c.861G>C	c.(859-861)AGG>AGC	p.R287S		NM_001079935	NP_001073404	Q6IFN5	O7E24_HUMAN	olfactory receptor, family 7, subfamily E,	287	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						CATCCCCCAGGAAGAGTATGG	0.512													13	31					0	0	0.004990	0	0
ZNF699	374879	broad.mit.edu	37	19	9406741	9406742	+	Missense_Mutation	DNP	AG	TA	TA			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:9406741_9406742AG>TA	uc002mlc.1	-	5	1338_1339	c.1338_1339CT>TA	c.(1336-1341)CCCTAT>CCTAAT	p.Y447N		NM_198535	NP_940937	Q32M78	ZN699_HUMAN	zinc finger protein 699	447	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TTACATTCATAGGGTTTCTCTC	0.426													11	29					0	0	0.004672	0	0
ZNF559	84527	broad.mit.edu	37	19	9453397	9453397	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:9453397C>T	uc002mlg.2	+	7	1917	c.1270C>T	c.(1270-1272)CTT>TTT	p.L424F	ZNF559_uc002mlf.2_Missense_Mutation_p.L193F|ZNF559_uc010dwl.1_Missense_Mutation_p.L193F|ZNF559_uc010xkn.1_Missense_Mutation_p.L416F|ZNF559_uc010dwm.1_3'UTR|ZNF559_uc002mle.3_Missense_Mutation_p.L488F|ZNF559_uc010dwk.1_Missense_Mutation_p.L193F|ZNF559_uc002mld.2_3'UTR|ZNF559_uc010dwo.1_Intron|ZNF177_uc002mli.2_Intron|ZNF177_uc002mlj.2_Intron	NM_032497	NP_115886	Q9BR84	ZN559_HUMAN	zinc finger protein 559	424	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						ATCCTCATTTCTTATTCGACA	0.408													7	36					0	0	0.003080	0	0
ZNF177	7730	broad.mit.edu	37	19	9491886	9491886	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:9491886C>T	uc002mli.2	+	12	1062	c.399C>T	c.(397-399)TTC>TTT	p.F133F	ZNF177_uc002mlj.2_Silent_p.F83F|ZNF177_uc002mlk.2_Silent_p.F133F	NM_003451	NP_003442	Q13360	ZN177_HUMAN	zinc finger protein 177	133	C2H2-type 1.				negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						GGAAAGCCTTCATTTTTCAGT	0.438													7	62					0	0	0.001984	0	0
Unknown	0	broad.mit.edu	37	19	9801846	9801846	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:9801846C>T	uc010xkx.1	-	3	644	c.21G>A	c.(19-21)GGG>GGA	p.G7G						RecName: Full=Zinc finger protein 562;																		CAAAGATGTTCCCTCCATTCT	0.423													6	40					0	0	0.001168	0	0
FBXL12	54850	broad.mit.edu	37	19	9922366	9922366	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:9922366G>A	uc002mme.2	-	3	429	c.187C>T	c.(187-189)CTT>TTT	p.L63F	FBXL12_uc002mmd.2_Missense_Mutation_p.L10F|FBXL12_uc002mmf.2_Missense_Mutation_p.L10F|FBXL12_uc002mmg.2_Missense_Mutation_p.L10F|FBXL12_uc002mmh.2_Missense_Mutation_p.L10F	NM_017703	NP_060173	Q9NXK8	FXL12_HUMAN	F-box and leucine-rich repeat protein 12	63	LRR 1.		L -> H (found in a renal cell carcinoma case; somatic mutation).				protein binding	p.L63H(1)		lung(1)|kidney(1)	2						TACCTTCGAAGGAGGTGCCAC	0.592													15	25					0	0	0.002450	0	0
C3P1	388503	broad.mit.edu	37	19	10158123	10158123	+	RNA	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:10158123C>T	uc010dwx.1	+	11		c.1566C>T				NR_027300				Synthetic construct DNA, clone: pF1KB7402, Homo sapiens LOC388503 gene, without stop codon, in Flexi system.												0						TTTCAGGGATCGCCAGGCCAA	0.423													17	58					0	0	0.006122	0	0
EIF3G	8666	broad.mit.edu	37	19	10226423	10226423	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:10226423G>A	uc002mnd.2	-	9	841	c.777C>T	c.(775-777)TTC>TTT	p.F259F		NM_003755	NP_003746	O75821	EIF3G_HUMAN	eukaryotic translation initiation factor 3,	259	RRM.					cytosol|eukaryotic translation initiation factor 3 complex|nucleus|perinuclear region of cytoplasm	nucleotide binding|protein binding|translation initiation factor activity				0			OV - Ovarian serous cystadenocarcinoma(20;3.53e-09)|Epithelial(33;4.91e-06)|all cancers(31;1.1e-05)			CGAAAGGCCGGAAGAGCTCCT	0.632													22	72					0	0	0.002780	0	0
KANK2	25959	broad.mit.edu	37	19	11303680	11303680	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:11303680G>A	uc010dxv.2	-	6	1634	c.1076C>T	c.(1075-1077)CCT>CTT	p.P359L	KANK2_uc002mqm.2_Missense_Mutation_p.P359L|KANK2_uc002mqo.3_Missense_Mutation_p.P359L|KANK2_uc002mqp.1_Missense_Mutation_p.P168L|KANK2_uc002mqq.2_Missense_Mutation_p.P359L	NM_015493	NP_056308	Q63ZY3	KANK2_HUMAN	ankyrin repeat domain 25 isoform 1	359											0						TGTGCCGTAAGGCTCCAGGCT	0.692													14	27					0	0	0.003163	0	0
TSPAN16	26526	broad.mit.edu	37	19	11408880	11408880	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:11408880G>A	uc002mqv.1	+	2	282	c.132G>A	c.(130-132)ACG>ACA	p.T44T	TSPAN16_uc002mqu.1_RNA	NM_012466	NP_036598	Q9UKR8	TSN16_HUMAN	transmembrane 4 superfamily member 16	44	Helical; (Potential).					integral to membrane				skin(1)	1						CCTCTCTGACGAATGTCCTCG	0.537													27	48					0	0	0.008361	0	0
RGL3	57139	broad.mit.edu	37	19	11508178	11508178	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:11508178G>A	uc002mrp.2	-	17	1906	c.1842C>T	c.(1840-1842)GCC>GCT	p.A614A	RGL3_uc002mrn.2_Silent_p.A378A|RGL3_uc002mrm.2_Silent_p.A378A|RGL3_uc002mro.2_Silent_p.A620A	NM_001035223	NP_001030300	Q3MIN7	RGL3_HUMAN	ral guanine nucleotide dissociation	614	Interaction with HRAS, MRAS and RIT1 (By similarity).|Ras-associating.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	intracellular				ovary(1)	1						GGATGACACGGGCCTCCGAGC	0.682													11	23					0	0	0.010729	0	0
CNN1	1264	broad.mit.edu	37	19	11660273	11660273	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:11660273G>A	uc002msc.1	+	6	801	c.637G>A	c.(637-639)GGA>AGA	p.G213R	CNN1_uc010xmb.1_Missense_Mutation_p.G163R|CNN1_uc010xmc.1_Missense_Mutation_p.G163R	NM_001299	NP_001290	P51911	CNN1_HUMAN	calponin 1, basic, smooth muscle	213	Calponin-like 2.				actomyosin structure organization|regulation of smooth muscle contraction	cytoskeleton	actin binding|calmodulin binding				0						CACCAACAAAGGAGCCAGCCA	0.692													12	24					0	0	0.013537	0	0
ZNF833	401898	broad.mit.edu	37	19	11762578	11762578	+	RNA	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:11762578C>T	uc002msl.3	+	6		c.590C>T								Homo sapiens cDNA FLJ44800 fis, clone BRACE3041162, moderately similar to Homo sapiens zinc finger protein 14 (KOX 6) (ZNF14).												0						GGGGTAAAACCATGTGAAAGC	0.443													3	19					0	0	0.009096	0	0
ZNF441	126068	broad.mit.edu	37	19	11888539	11888539	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:11888539C>T	uc010dyj.2	+	2	311	c.117C>T	c.(115-117)AAC>AAT	p.N39N	ZNF441_uc002msn.3_5'UTR	NM_152355	NP_689568	Q8N8Z8	ZN441_HUMAN	zinc finger protein 441	39	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						CCATCAGAAACCTGGACTGTA	0.408													8	22					0	0	0.003080	0	0
ZNF439	90594	broad.mit.edu	37	19	11978815	11978815	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:11978815C>T	uc002mss.2	+	3	1059	c.931C>T	c.(931-933)CGT>TGT	p.R311C	ZNF439_uc002msr.2_Missense_Mutation_p.R175C	NM_152262	NP_689475	Q8NDP4	ZN439_HUMAN	zinc finger protein 439	311	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						CATGTGTCCCCGTTATGTTCG	0.413													29	40					0	0	0.007291	0	0
ZNF564	163050	broad.mit.edu	37	19	12638052	12638052	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:12638052G>A	uc002mty.2	-	4	1080	c.870C>T	c.(868-870)TTC>TTT	p.F290F	ZNF709_uc002mtx.3_Intron	NM_144976	NP_659413	Q8TBZ8	ZN564_HUMAN	zinc finger protein 564	290	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						TGAAAGAAATGAAGGCCTTCC	0.393													15	42					0	0	0.003163	0	0
TNPO2	30000	broad.mit.edu	37	19	12822379	12822379	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:12822379G>A	uc002muo.2	-	10	1124	c.939C>T	c.(937-939)ATC>ATT	p.I313I	TNPO2_uc002mup.2_Silent_p.I405I|TNPO2_uc002muq.2_Silent_p.I313I|TNPO2_uc002mur.2_Silent_p.I313I	NM_001136196	NP_001129668	O14787	TNPO2_HUMAN	transportin 2 (importin 3, karyopherin beta 2b)	313	HEAT 5.				intracellular protein transport	cytoplasm|nucleus	nuclear localization sequence binding|protein binding|protein transporter activity			ovary(1)	1						TGAGCAGGATGATGTCAATTT	0.577													12	26					0	0	0.010729	0	0
NFIX	4784	broad.mit.edu	37	19	13184830	13184830	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:13184830C>T	uc010xmx.1	+	5	885	c.832C>T	c.(832-834)CCT>TCT	p.P278S	NFIX_uc002mwd.2_Missense_Mutation_p.P270S|NFIX_uc002mwe.2_Missense_Mutation_p.P262S|NFIX_uc002mwf.2_Missense_Mutation_p.P273S|NFIX_uc002mwg.1_Missense_Mutation_p.P269S			Q14938	NFIX_HUMAN	RecName: Full=Nuclear factor 1;	270					DNA replication|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity			breast(1)|skin(1)	2			OV - Ovarian serous cystadenocarcinoma(19;8.2e-22)			CACCTCCCCTCCTTCCACCAG	0.622													33	48					0	0	0.004878	0	0
NFIX	4784	broad.mit.edu	37	19	13192533	13192533	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:13192533C>T	uc010xmx.1	+	8	1195	c.1142C>T	c.(1141-1143)TCC>TTC	p.S381F	NFIX_uc002mwd.2_Missense_Mutation_p.S373F|NFIX_uc002mwe.2_Missense_Mutation_p.S365F|NFIX_uc002mwf.2_Missense_Mutation_p.S335F|NFIX_uc002mwg.1_Missense_Mutation_p.S372F			Q14938	NFIX_HUMAN	RecName: Full=Nuclear factor 1;	373					DNA replication|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity			breast(1)|skin(1)	2			OV - Ovarian serous cystadenocarcinoma(19;8.2e-22)			CACTTCCCCTCCACGTCCATC	0.632													17	18					0	0	0.006122	0	0
CACNA1A	773	broad.mit.edu	37	19	13409891	13409891	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:13409891C>T	uc010dze.2	-	19	2795	c.2559G>A	c.(2557-2559)CAG>CAA	p.Q853Q	CACNA1A_uc010dzc.2_Silent_p.Q378Q|CACNA1A_uc002mwy.3_Silent_p.Q852Q|CACNA1A_uc010xne.1_Silent_p.Q381Q	NM_001127221	NP_001120693	O00555	CAC1A_HUMAN	calcium channel, alpha 1A subunit isoform 3	853	Cytoplasmic (Potential).				cell death|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|membrane depolarization|regulation of insulin secretion	cytoplasm|nucleus	syntaxin binding			large_intestine(2)	2			OV - Ovarian serous cystadenocarcinoma(19;5.07e-21)		Bepridil(DB01244)|Cinnarizine(DB00568)|Loperamide(DB00836)|Nisoldipine(DB00401)|Pregabalin(DB00230)	CCTCGGCGCGCTGCTGGCCGA	0.726													8	13					0	0	0.003080	0	0
DCAF15	90379	broad.mit.edu	37	19	14071304	14071304	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:14071304G>A	uc002mxt.2	+	12	1665	c.1659G>A	c.(1657-1659)AAG>AAA	p.K553K	DCAF15_uc002mxu.2_RNA	NM_138353	NP_612362	Q66K64	DCA15_HUMAN	DDB1 and CUL4 associated factor 15	553										central_nervous_system(1)	1						CCTACCGCAAGAGCTGCGTGG	0.677											OREG0025301	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	6	13					0	0	0.003080	0	0
RFX1	5989	broad.mit.edu	37	19	14079479	14079479	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:14079479G>A	uc002mxv.2	-	12	1902	c.1630C>T	c.(1630-1632)CAG>TAG	p.Q544*		NM_002918	NP_002909	P22670	RFX1_HUMAN	regulatory factor X1	544					immune response	nucleus	DNA binding|protein binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity			lung(1)|pancreas(1)	2			OV - Ovarian serous cystadenocarcinoma(19;6.67e-23)			TCCATCTTCTGGATGGGCTTG	0.682													17	27					0	0	0.012319	0	0
PKN1	5585	broad.mit.edu	37	19	14581591	14581591	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:14581591G>A	uc002myp.2	+	21	2721	c.2553G>A	c.(2551-2553)CGG>CGA	p.R851R	PKN1_uc002myq.2_Silent_p.R857R|PKN1_uc002myr.2_Silent_p.R191R	NM_002741	NP_002732	Q16512	PKN1_HUMAN	protein kinase N1 isoform 2	851	Protein kinase.				activation of JUN kinase activity|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transcription, DNA-dependent	endosome|nucleus|plasma membrane	androgen receptor binding|ATP binding|chromatin binding|GTP-Rho binding|histone binding|histone deacetylase binding|histone kinase activity (H3-T11 specific)|ligand-dependent nuclear receptor transcription coactivator activity|protein kinase C activity|protein kinase C binding|Rac GTPase binding			ovary(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)	8						AGCTGCTTCGGAGGAACCCAG	0.617													24	53					0	0	0.006320	0	0
EMR3	84658	broad.mit.edu	37	19	14740983	14740983	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:14740983G>A	uc002mzi.3	-	14	1828	c.1680C>T	c.(1678-1680)ATC>ATT	p.I560I	EMR3_uc010dzp.2_Silent_p.I508I|EMR3_uc010xnv.1_Silent_p.I434I	NM_032571	NP_115960	Q9BY15	EMR3_HUMAN	egf-like module-containing mucin-like receptor	560	Helical; Name=6; (Potential).				neuropeptide signaling pathway	extracellular space|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(5)|skin(1)	6						TGCAGCCCAGGATGAAGAGCT	0.512													21	39					0	0	0.010504	0	0
SLC1A6	6511	broad.mit.edu	37	19	15083549	15083549	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:15083549G>A	uc002naa.1	-	1	182	c.174C>T	c.(172-174)TTC>TTT	p.F58F	SLC1A6_uc010dzu.1_Silent_p.F58F|SLC1A6_uc010xod.1_Missense_Mutation_p.H63Y|SLC1A6_uc002nab.2_Silent_p.F58F|SLC1A6_uc002nac.2_Silent_p.F58F|SLC1A6_uc002nad.1_Silent_p.F58F	NM_005071	NP_005062	P48664	EAA4_HUMAN	solute carrier family 1 (high affinity	58	Helical; (Potential).				synaptic transmission	integral to plasma membrane|membrane fraction	high-affinity glutamate transmembrane transporter activity|L-aspartate transmembrane transporter activity|sodium:dicarboxylate symporter activity			pancreas(3)|ovary(2)|skin(1)	6					L-Glutamic Acid(DB00142)	TCAGCAGAATGAAGGCGTTTC	0.642													9	27					0	0	0.008291	0	0
CCDC105	126402	broad.mit.edu	37	19	15132205	15132205	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:15132205C>T	uc002nae.2	+	4	1014	c.915C>T	c.(913-915)GTC>GTT	p.V305V		NM_173482	NP_775753	Q8IYK2	CC105_HUMAN	coiled-coil domain containing 105	305	Potential.				microtubule cytoskeleton organization	microtubule				ovary(1)	1						GGTTGTTGGTCGAGTCCAAGG	0.612													8	21					0	0	0.003080	0	0
CASP14	23581	broad.mit.edu	37	19	15166036	15166036	+	Missense_Mutation	SNP	A	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:15166036A>C	uc010dzv.1	+	5	779	c.471A>C	c.(469-471)CAA>CAC	p.Q157H	CASP14_uc002naf.2_Missense_Mutation_p.Q157H	NM_012114	NP_036246	P31944	CASPE_HUMAN	caspase 14 precursor	157					apoptosis|cell differentiation|epidermis development|proteolysis	cytoplasm|nucleus	cysteine-type endopeptidase activity			skin(2)|ovary(1)|lung(1)	4						ACAGCCCACAAACCATCCCAA	0.522													15	50					0	0	0.002450	0	0
NOTCH3	4854	broad.mit.edu	37	19	15276216	15276216	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:15276216G>A	uc002nan.2	-	31	5854	c.5778C>T	c.(5776-5778)ATC>ATT	p.I1926I		NM_000435	NP_000426	Q9UM47	NOTC3_HUMAN	Notch homolog 3 precursor	1926	Cytoplasmic (Potential).|ANK 3.				Notch receptor processing|Notch signaling pathway|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to membrane|nucleoplasm|plasma membrane	calcium ion binding|protein binding|receptor activity			lung(8)|ovary(5)|skin(4)|prostate(2)|central_nervous_system(1)|breast(1)	21			OV - Ovarian serous cystadenocarcinoma(3;2.6e-20)|Epithelial(3;1.34e-16)|all cancers(3;5.13e-15)			CATGGCTGGCGATGAGCTCTT	0.582													12	47					0	0	0.013537	0	0
NOTCH3	4854	broad.mit.edu	37	19	15289871	15289871	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:15289871C>T	uc002nan.2	-	22	3759	c.3683G>A	c.(3682-3684)GGA>GAA	p.G1228E	NOTCH3_uc002nao.1_Missense_Mutation_p.G1176E	NM_000435	NP_000426	Q9UM47	NOTC3_HUMAN	Notch homolog 3 precursor	1228	Extracellular (Potential).|EGF-like 31.				Notch receptor processing|Notch signaling pathway|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to membrane|nucleoplasm|plasma membrane	calcium ion binding|protein binding|receptor activity			lung(8)|ovary(5)|skin(4)|prostate(2)|central_nervous_system(1)|breast(1)	21			OV - Ovarian serous cystadenocarcinoma(3;2.6e-20)|Epithelial(3;1.34e-16)|all cancers(3;5.13e-15)			ACGGAAACCTCCGCCTGGGTC	0.622													10	24					0	0	0.006214	0	0
BRD4	23476	broad.mit.edu	37	19	15350023	15350023	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:15350023G>A	uc002nar.2	-	18	3851	c.3629C>T	c.(3628-3630)CCG>CTG	p.P1210L		NM_058243	NP_490597	O60885	BRD4_HUMAN	bromodomain-containing protein 4 isoform long	1210					interspecies interaction between organisms|positive regulation of G2/M transition of mitotic cell cycle|positive regulation of transcription elongation from RNA polymerase II promoter|regulation of transcription involved in G1 phase of mitotic cell cycle	condensed nuclear chromosome|cytoplasm	protein binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(3;3.02e-24)|Epithelial(3;4.71e-20)|all cancers(3;2.26e-18)			GGGGGTGGTCGGATGCTTCTG	0.607			T	NUT|C15orf55	lethal midline carcinoma of young people								9	30					0	0	0.010729	0	0
AKAP8L	26993	broad.mit.edu	37	19	15512189	15512189	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:15512189G>A	uc002naw.1	-	5	687	c.588C>T	c.(586-588)GGC>GGT	p.G196G	AKAP8L_uc002nax.1_RNA|AKAP8L_uc010xoh.1_Silent_p.G135G|AKAP8L_uc002nay.1_Silent_p.G196G|AKAP8L_uc002naz.2_Silent_p.G44G	NM_014371	NP_055186	Q9ULX6	AKP8L_HUMAN	A kinase (PRKA) anchor protein 8-like	196						cytoplasm|nuclear matrix	DEAD/H-box RNA helicase binding|DNA binding|zinc ion binding			ovary(1)	1						TGCGCCCATAGCCTGAGGCCA	0.687													20	36					0	0	0.008871	0	0
WIZ	58525	broad.mit.edu	37	19	15535061	15535062	+	Silent	DNP	GG	AA	AA			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:15535061_15535062GG>AA	uc002nbc.2	-	7	2702_2703	c.2679_2680CC>TT	c.(2677-2682)TCCCTG>TCTTTG	p.893_894SL>SL	WIZ_uc002nba.3_Silent_p.760_761SL>SL|WIZ_uc002nbb.3_Silent_p.719_720SL>SL	NM_021241	NP_067064	O95785	WIZ_HUMAN	widely-interspaced zinc finger motifs	1576_1577						nucleus	zinc ion binding				0						CGGGGCACCAGGGAGGGGACTG	0.663													12	23					0	0	0.004672	0	0
WIZ	58525	broad.mit.edu	37	19	15536289	15536289	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:15536289G>A	uc002nbc.2	-	5	1917	c.1894C>T	c.(1894-1896)CCC>TCC	p.P632S	WIZ_uc002nba.3_Missense_Mutation_p.P499S|WIZ_uc002nbb.3_Missense_Mutation_p.P458S	NM_021241	NP_067064	O95785	WIZ_HUMAN	widely-interspaced zinc finger motifs	1315						nucleus	zinc ion binding				0						CCAGCCAGGGGCGACAGCGGC	0.726													3	5					0	0	0.004672	0	0
PGLYRP2	114770	broad.mit.edu	37	19	15587195	15587195	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:15587195C>T	uc002nbf.3	-	2	419	c.286G>A	c.(286-288)GAG>AAG	p.E96K	PGLYRP2_uc002nbg.3_Missense_Mutation_p.E96K	NM_052890	NP_443122	Q96PD5	PGRP2_HUMAN	peptidoglycan recognition protein 2 precursor	96					defense response to Gram-positive bacterium|detection of bacterium|innate immune response|peptide amidation|peptidoglycan catabolic process	extracellular region|intracellular|membrane	N-acetylmuramoyl-L-alanine amidase activity|peptidoglycan receptor activity|zinc ion binding			ovary(3)	3						CGGGCCACCTCCTTGGTCAGG	0.612													25	53					0	0	0.003330	0	0
CYP4F22	126410	broad.mit.edu	37	19	15648746	15648746	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:15648746C>T	uc002nbh.3	+	7	780	c.613C>T	c.(613-615)CTC>TTC	p.L205F		NM_173483	NP_775754	Q6NT55	CP4FN_HUMAN	cytochrome P450, family 4, subfamily F,	205						endoplasmic reticulum membrane|microsome	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen			ovary(1)|pancreas(1)	2						GCATATCAGCCTCATGACCCT	0.512													26	42					0	0	0.006320	0	0
CYP4F22	126410	broad.mit.edu	37	19	15654785	15654785	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:15654785G>A	uc002nbh.3	+	9	1110	c.943G>A	c.(943-945)GAA>AAA	p.E315K		NM_173483	NP_775754	Q6NT55	CP4FN_HUMAN	cytochrome P450, family 4, subfamily F,	315						endoplasmic reticulum membrane|microsome	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen			ovary(1)|pancreas(1)	2						ATTCCAGGATGAAGATGGAAA	0.562													14	28					0	0	0.004007	0	0
CYP4F3	4051	broad.mit.edu	37	19	15760877	15760877	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:15760877G>A	uc002nbj.2	+	7	852	c.802G>A	c.(802-804)GAT>AAT	p.D268N	CYP4F3_uc010xok.1_Missense_Mutation_p.D268N|CYP4F3_uc010xol.1_Missense_Mutation_p.D268N|CYP4F3_uc010xom.1_Missense_Mutation_p.D119N|CYP4F3_uc002nbk.2_Missense_Mutation_p.D268N|CYP4F3_uc010xon.1_5'UTR	NM_000896	NP_000887	Q08477	CP4F3_HUMAN	cytochrome P450, family 4, subfamily F,	268					leukotriene metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	electron carrier activity|heme binding|leukotriene-B4 20-monooxygenase activity|oxygen binding			ovary(3)	3						CGACTTCACAGATGCCGTCAT	0.562													28	82					0	0	0.003271	0	0
CYP4F3	4051	broad.mit.edu	37	19	15770121	15770121	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:15770121G>A	uc002nbj.2	+	13	1539	c.1489G>A	c.(1489-1491)GAG>AAG	p.E497K	CYP4F3_uc010xok.1_Missense_Mutation_p.E497K|CYP4F3_uc010xol.1_Missense_Mutation_p.E497K|CYP4F3_uc010xom.1_Missense_Mutation_p.E348K|CYP4F3_uc002nbk.2_Missense_Mutation_p.E497K|CYP4F3_uc010xon.1_Missense_Mutation_p.E207K	NM_000896	NP_000887	Q08477	CP4F3_HUMAN	cytochrome P450, family 4, subfamily F,	497					leukotriene metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	electron carrier activity|heme binding|leukotriene-B4 20-monooxygenase activity|oxygen binding			ovary(3)	3						TGACCACACCGAGCCCCGCAG	0.682													8	14					0	0	0.004482	0	0
CYP4F12	66002	broad.mit.edu	37	19	15793264	15793264	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:15793264C>T	uc002nbl.2	+	6	652	c.591C>T	c.(589-591)CTC>CTT	p.L197L		NM_023944	NP_076433			cytochrome P450, family 4, subfamily F,											skin(3)|ovary(2)|central_nervous_system(2)	7	Acute lymphoblastic leukemia(2;0.0367)					ACATCAGCCTCATGACCTTGG	0.532													26	55					0	0	0.012213	0	0
CYP4F12	66002	broad.mit.edu	37	19	15807820	15807820	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:15807820G>A	uc002nbl.2	+	13	1561	c.1500G>A	c.(1498-1500)AGG>AGA	p.R500R		NM_023944	NP_076433			cytochrome P450, family 4, subfamily F,											skin(3)|ovary(2)|central_nervous_system(2)	7	Acute lymphoblastic leukemia(2;0.0367)					AGCCCCGCAGGAAGCTGGAAT	0.597													20	39					0	0	0.012319	0	0
OR10H3	26532	broad.mit.edu	37	19	15852975	15852975	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:15852975C>T	uc010xoq.1	+	1	773	c.773C>T	c.(772-774)TCC>TTC	p.S258F		NM_013938	NP_039226	O60404	O10H3_HUMAN	olfactory receptor, family 10, subfamily H,	258	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						AGTTTTGCCTCCCTTATCTAC	0.512													36	61					0	0	0.013726	0	0
OR10H5	284433	broad.mit.edu	37	19	15905669	15905669	+	Nonsense_Mutation	SNP	G	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:15905669G>T	uc010xos.1	+	1	811	c.811G>T	c.(811-813)GGA>TGA	p.G271*		NM_001004466	NP_001004466	Q8NGA6	O10H5_HUMAN	olfactory receptor, family 10, subfamily H,	271	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						GTCTCCGGAAGGAGACACCTT	0.567													11	22					1.61879e-10	1.74385e-10	0.013537	1	0
CYP4F11	57834	broad.mit.edu	37	19	16032971	16032971	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:16032971C>T	uc002nbu.2	-	9	1027	c.991G>A	c.(991-993)GAC>AAC	p.D331N	CYP4F11_uc010eab.1_Missense_Mutation_p.D331N|CYP4F11_uc002nbt.2_Missense_Mutation_p.D331N	NM_001128932	NP_001122404	Q9HBI6	CP4FB_HUMAN	cytochrome P450 family 4 subfamily F polypeptide	331					inflammatory response|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)	1						GCTGTAGTGTCATGGCCTGAG	0.562													7	39					0	0	0.003080	0	0
CPAMD8	27151	broad.mit.edu	37	19	17091331	17091331	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:17091331G>A	uc002nfb.2	-	14	1734	c.1702C>T	c.(1702-1704)CGT>TGT	p.R568C		NM_015692	NP_056507	Q8IZJ3	CPMD8_HUMAN	C3 and PZP-like, alpha-2-macroglobulin domain	521						extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			ovary(4)|breast(4)|large_intestine(3)|pancreas(1)|skin(1)	13						TGTGTTAAACGAATCGGTTTC	0.592													17	62					0	0	0.006122	0	0
ANKLE1	126549	broad.mit.edu	37	19	17394161	17394161	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:17394161C>T	uc002nga.2	+	5	864	c.588C>T	c.(586-588)CCC>CCT	p.P196P	ANKLE1_uc010xpm.1_RNA|ANKLE1_uc010eao.1_Silent_p.P218P|ANKLE1_uc010xpn.1_Silent_p.P250P|ANKLE1_uc002nfy.2_Silent_p.P185P|ANKLE1_uc002nfz.2_5'UTR	NM_152363	NP_689576	Q8NAG6	ANKL1_HUMAN	ankyrin repeat domain 41	196						nuclear envelope					0						TCCCTGTTCCCCTTGAAACTG	0.592													32	67					0	0	0.013726	0	0
FAM129C	199786	broad.mit.edu	37	19	17653061	17653061	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:17653061G>A	uc010xpr.1	+	11	1518	c.1380G>A	c.(1378-1380)GGG>GGA	p.G460G	FAM129C_uc010xpq.1_Silent_p.G460G|FAM129C_uc002ngy.3_Silent_p.G186G|FAM129C_uc010xpu.1_Silent_p.G186G|FAM129C_uc002ngz.3_RNA|FAM129C_uc010eaw.2_Silent_p.G186G|FAM129C_uc002nhb.2_Silent_p.G59G	NM_173544	NP_775815	Q86XR2	NIBL2_HUMAN	B-cell novel protein 1 isoform a	460											0						GCTTTCTGGGGATGCAGAGCC	0.592													74	120					0	0	0.014410	0	0
MAP1S	55201	broad.mit.edu	37	19	17838325	17838325	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:17838325C>T	uc002nhe.1	+	5	2141	c.2132C>T	c.(2131-2133)CCC>CTC	p.P711L	MAP1S_uc010eba.1_Intron|MAP1S_uc002nhf.1_5'UTR|MAP1S_uc010xpv.1_Missense_Mutation_p.P685L	NM_018174	NP_060644	Q66K74	MAP1S_HUMAN	BPY2 interacting protein 1	711	Pro-rich.|Necessary for the microtubule-organizing center localization.|Necessary for interaction with RASSF1 isoform A and isoform C.				apoptosis|brain development|microtubule bundle formation|mitochondrion transport along microtubule|neuron projection morphogenesis	cytosol|dendrite|microtubule|neuronal cell body|nucleus|perinuclear region of cytoplasm|spindle|synapse	actin filament binding|beta-tubulin binding|DNA binding|microtubule binding			central_nervous_system(1)	1						CCATCCGCCCCCACCAGTGAG	0.701													7	17					0	0	0.001984	0	0
B3GNT3	10331	broad.mit.edu	37	19	17922514	17922514	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:17922514C>T	uc002nhk.1	+	3	787	c.702C>T	c.(700-702)TTC>TTT	p.F234F	B3GNT3_uc002nhl.1_Silent_p.F234F|B3GNT3_uc010ebd.1_Silent_p.F234F|B3GNT3_uc010ebe.1_Silent_p.F234F	NM_014256	NP_055071	Q9Y2A9	B3GN3_HUMAN	UDP-GlcNAc:betaGal	234	Lumenal (Potential).				protein glycosylation	Golgi membrane|integral to plasma membrane	galactosyltransferase activity			upper_aerodigestive_tract(1)	1						GCCACCTCTTCGTGGGGCAAC	0.562													21	42					0	0	0.003954	0	0
B3GNT3	10331	broad.mit.edu	37	19	17922734	17922734	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:17922734G>A	uc002nhk.1	+	3	1007	c.922G>A	c.(922-924)GGA>AGA	p.G308R	B3GNT3_uc002nhl.1_Missense_Mutation_p.G308R|B3GNT3_uc010ebd.1_Missense_Mutation_p.G308R|B3GNT3_uc010ebe.1_Missense_Mutation_p.G308R	NM_014256	NP_055071	Q9Y2A9	B3GN3_HUMAN	UDP-GlcNAc:betaGal	308	Lumenal (Potential).				protein glycosylation	Golgi membrane|integral to plasma membrane	galactosyltransferase activity			upper_aerodigestive_tract(1)	1						GGAGCTTGAGGGACTGAAGCC	0.627													61	110					0	0	0.014410	0	0
JAK3	3718	broad.mit.edu	37	19	17945447	17945447	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:17945447G>A	uc002nhn.3	-	17	2383	c.2283C>T	c.(2281-2283)GCC>GCT	p.A761A	JAK3_uc010ebh.2_Intron|JAK3_uc002nho.2_Silent_p.A761A	NM_000215	NP_000206	P52333	JAK3_HUMAN	Janus kinase 3	761	Protein kinase 1.				B cell differentiation|cytokine-mediated signaling pathway|enzyme linked receptor protein signaling pathway|intracellular protein kinase cascade|negative regulation of dendritic cell cytokine production|negative regulation of FasL biosynthetic process|negative regulation of interleukin-10 production|negative regulation of interleukin-12 production|negative regulation of T-helper 1 cell differentiation|negative regulation of thymocyte apoptosis|peptidyl-tyrosine phosphorylation|positive regulation of anti-apoptosis|response to interleukin-15|response to interleukin-2|response to interleukin-4|response to interleukin-9|T cell homeostasis	cytoskeleton|cytosol|endomembrane system|membrane	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding			haematopoietic_and_lymphoid_tissue(40)|lung(5)|breast(5)|ovary(3)|stomach(2)|upper_aerodigestive_tract(1)	56						CCGGCTCATAGGCCATGCACT	0.612		2	Mis		acute megakaryocytic leukemia|								28	66					0	0	0.010818	0	0
IL12RB1	3594	broad.mit.edu	37	19	18177429	18177429	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:18177429G>A	uc002nhw.1	-	12	1470	c.1406C>T	c.(1405-1407)TCC>TTC	p.S469F	IL12RB1_uc010xqb.1_Missense_Mutation_p.S469F|IL12RB1_uc002nhx.1_Missense_Mutation_p.S509F	NM_005535	NP_005526	P42701	I12R1_HUMAN	interleukin 12 receptor, beta 1 isoform 1	469	Extracellular (Potential).|Fibronectin type-III 5.				cellular response to interferon-gamma|interleukin-12-mediated signaling pathway|positive regulation of activated T cell proliferation|positive regulation of defense response to virus by host|positive regulation of interferon-gamma production|positive regulation of memory T cell differentiation|positive regulation of T cell mediated cytotoxicity|positive regulation of T-helper 1 type immune response|positive regulation of T-helper 17 cell lineage commitment|positive regulation of T-helper 17 type immune response	interleukin-12 receptor complex|interleukin-23 receptor complex	cytokine receptor activity			pancreas(1)	1						GCTCAGCAGGGATGGTGCCCA	0.507													50	79					0	0	0.014410	0	0
MAST3	23031	broad.mit.edu	37	19	18255851	18255851	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:18255851C>T	uc002nhz.3	+	23	2764	c.2764C>T	c.(2764-2766)CCG>TCG	p.P922S		NM_015016	NP_055831	O60307	MAST3_HUMAN	microtubule associated serine/threonine kinase	922	Ser-rich.						ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			large_intestine(2)|ovary(2)|stomach(1)	5						CCCCCTTTCCCCGCGCTCTCT	0.657													8	13					0	0	0.006214	0	0
PDE4C	5143	broad.mit.edu	37	19	18329177	18329177	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:18329177G>A	uc010xqc.1	-	10	1677	c.1197C>T	c.(1195-1197)TCC>TCT	p.S399S	PDE4C_uc002nik.3_Silent_p.S399S|PDE4C_uc002nil.3_Silent_p.S399S|PDE4C_uc002nif.3_Silent_p.S168S|PDE4C_uc002nig.3_Intron|PDE4C_uc002nih.3_Silent_p.S169S|PDE4C_uc010ebk.2_Silent_p.S293S|PDE4C_uc002nii.3_Silent_p.S367S|PDE4C_uc010ebl.2_Silent_p.S113S|PDE4C_uc010xqd.1_Silent_p.S168S	NM_001098819	NP_001092289	Q08493	PDE4C_HUMAN	phosphodiesterase 4C isoform PDE4C-2	399					signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding			ovary(2)|skin(2)|central_nervous_system(1)	5					Dyphylline(DB00651)	GCACATGCGTGGACTGGGCCA	0.662													46	75					0	0	0.014410	0	0
PDE4C	5143	broad.mit.edu	37	19	18332997	18332997	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:18332997C>T	uc010xqc.1	-	2	859	c.379G>A	c.(379-381)GAC>AAC	p.D127N	PDE4C_uc002nik.3_Missense_Mutation_p.D127N|PDE4C_uc002nil.3_Missense_Mutation_p.D127N|PDE4C_uc002nif.3_5'Flank|PDE4C_uc002nig.3_5'Flank|PDE4C_uc002nih.3_5'Flank|PDE4C_uc010ebk.2_Missense_Mutation_p.D21N|PDE4C_uc002nii.3_Missense_Mutation_p.D95N|PDE4C_uc010ebl.2_5'UTR|PDE4C_uc010xqd.1_5'UTR|PDE4C_uc010ebm.1_5'Flank|PDE4C_uc002nim.1_Missense_Mutation_p.D127N	NM_001098819	NP_001092289	Q08493	PDE4C_HUMAN	phosphodiesterase 4C isoform PDE4C-2	127					signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding			ovary(2)|skin(2)|central_nervous_system(1)	5					Dyphylline(DB00651)	AGTTCATAGTCGCTATCTGAG	0.652													4	27					0	0	0.000602	0	0
PGPEP1	54858	broad.mit.edu	37	19	18453694	18453694	+	Silent	SNP	C	T	T	rs147343602		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:18453694C>T	uc002nis.1	+	2	144	c.60C>T	c.(58-60)ACC>ACT	p.T20T	PGPEP1_uc002nir.1_RNA|PGPEP1_uc002nit.1_5'UTR|PGPEP1_uc010xqg.1_Intron	NM_017712	NP_060182	Q9NXJ5	PGPI_HUMAN	pyroglutamyl-peptidase I	20							cysteine-type peptidase activity				0						GGGAACACACCGTGAACGCCA	0.537													21	34					0	0	0.002780	0	0
C19orf50	79036	broad.mit.edu	37	19	18672911	18672911	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:18672911C>T	uc002njo.2	+	2	187	c.45C>T	c.(43-45)ATC>ATT	p.I15I	C19orf50_uc002njp.2_RNA|C19orf50_uc002njq.2_Silent_p.I15I	NM_024069	NP_076974	Q9BQD3	CS050_HUMAN	hypothetical protein LOC79036	15							protein binding				0						GCGGCCGCATCCTGAGCATGG	0.587													9	17					0	0	0.013537	0	0
TMEM59L	25789	broad.mit.edu	37	19	18724759	18724759	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:18724759C>T	uc002njy.3	+	2	336	c.249C>T	c.(247-249)CTC>CTT	p.L83L	TMEM59L_uc010ebu.1_Silent_p.L83L	NM_012109	NP_036241	Q9UK28	TM59L_HUMAN	brain-specific membrane-anchored protein	83						Golgi membrane|integral to membrane|membrane fraction				ovary(2)|skin(2)	4						GCTGCCGCCTCTTCTCCATCT	0.672													26	48					0	0	0.005443	0	0
NCAN	1463	broad.mit.edu	37	19	19327836	19327836	+	Splice_Site	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:19327836G>A	uc002nlz.2	+	2	172	c.73_splice	c.e2+1	p.G25_splice		NM_004386	NP_004377	O14594	NCAN_HUMAN	chondroitin sulfate proteoglycan 3 precursor						axon guidance|cell adhesion	extracellular region	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(4)	4			Epithelial(12;0.00544)			GGGGAACAGGGTGAGTTGGTT	0.567													37	82					0	0	0.004289	0	0
NCAN	1463	broad.mit.edu	37	19	19351455	19351455	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:19351455C>T	uc002nlz.2	+	12	3552	c.3453C>T	c.(3451-3453)ATC>ATT	p.I1151I	NCAN_uc002nma.2_5'UTR	NM_004386	NP_004377	O14594	NCAN_HUMAN	chondroitin sulfate proteoglycan 3 precursor	1151	C-type lectin.				axon guidance|cell adhesion	extracellular region	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(4)	4			Epithelial(12;0.00544)			ACGACAGGATCGTGGAGAGAG	0.637													20	53					0	0	0.012319	0	0
SF4	57794	broad.mit.edu	37	19	19420913	19420913	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:19420913G>A	uc002nmh.2	-	3	305	c.303C>T	c.(301-303)ACC>ACT	p.T101T	SF4_uc002nmi.2_5'UTR|SF4_uc002nmj.2_Intron|SF4_uc010xqr.1_RNA|SF4_uc010xqs.1_RNA	NM_172231	NP_757386	Q8IWZ8	SUGP1_HUMAN	splicing factor 4	101					nuclear mRNA splicing, via spliceosome	nucleoplasm|spliceosomal complex	RNA binding				0						CACCTGTGCTGGTCTGTGCCT	0.527													15	29					0	0	0.003163	0	0
CILP2	148113	broad.mit.edu	37	19	19655245	19655245	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:19655245G>A	uc002nmv.3	+	8	1976	c.1891G>A	c.(1891-1893)GAC>AAC	p.D631N	CILP2_uc002nmw.3_Missense_Mutation_p.D637N	NM_153221	NP_694953	Q8IUL8	CILP2_HUMAN	cartilage intermediate layer protein 2	631						proteinaceous extracellular matrix	carbohydrate binding|carboxypeptidase activity			ovary(1)	1						CGTGGACAGCGACGGCGAGCT	0.726													37	62					0	0	0.011902	0	0
CILP2	148113	broad.mit.edu	37	19	19655535	19655535	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:19655535C>T	uc002nmv.3	+	8	2266	c.2181C>T	c.(2179-2181)TTC>TTT	p.F727F	CILP2_uc002nmw.3_Silent_p.F733F	NM_153221	NP_694953	Q8IUL8	CILP2_HUMAN	cartilage intermediate layer protein 2	727						proteinaceous extracellular matrix	carbohydrate binding|carboxypeptidase activity			ovary(1)	1						GGCGCCTGTTCAATCTGGACG	0.706													6	17					0	0	0.001168	0	0
CILP2	148113	broad.mit.edu	37	19	19656520	19656520	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:19656520G>A	uc002nmv.3	+	8	3251	c.3166G>A	c.(3166-3168)GGC>AGC	p.G1056S	CILP2_uc002nmw.3_Missense_Mutation_p.G1062S	NM_153221	NP_694953	Q8IUL8	CILP2_HUMAN	cartilage intermediate layer protein 2	1056						proteinaceous extracellular matrix	carbohydrate binding|carboxypeptidase activity			ovary(1)	1						AGACCCTCTGGGCCACAACTA	0.637													4	20					0	0	0.000602	0	0
ZNF90	7643	broad.mit.edu	37	19	20215171	20215171	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:20215171C>T	uc002nor.2	+	2	266	c.127C>T	c.(127-129)CTT>TTT	p.L43F	ZNF90_uc002nos.1_RNA|ZNF90_uc002not.1_Intron	NM_007138	NP_009069	Q03938	ZNF90_HUMAN	zinc finger protein 90	43	KRAB.					Golgi apparatus|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						CCTGGTCTTCCTTGGTGAGGA	0.373													12	47					0	0	0.001855	0	0
ZNF100	163227	broad.mit.edu	37	19	21910221	21910221	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:21910221A>G	uc002nqi.2	-	5	1092	c.893T>C	c.(892-894)TTT>TCT	p.F298S	ZNF100_uc002nqh.2_Missense_Mutation_p.F234S	NM_173531	NP_775802	Q8IYN0	ZN100_HUMAN	zinc finger protein 100	298	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AGACCGGTTAAAAGCTTTCCC	0.403													4	19					0	0	0.009096	0	0
ZNF43	7594	broad.mit.edu	37	19	21992307	21992307	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:21992307C>T	uc002nqj.2	-	4	662	c.532G>A	c.(532-534)GAA>AAA	p.E178K	ZNF43_uc010ecv.2_Missense_Mutation_p.E172K|ZNF43_uc002nql.2_Missense_Mutation_p.E172K|ZNF43_uc002nqm.2_Missense_Mutation_p.E172K|ZNF43_uc002nqk.2_Missense_Mutation_p.E108K	NM_003423	NP_003414	P17038	ZNF43_HUMAN	zinc finger protein 43	178	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2		Renal(1328;0.000219)|Hepatocellular(1079;0.121)		GBM - Glioblastoma multiforme(1328;5.97e-05)|STAD - Stomach adenocarcinoma(1328;0.0127)		TTGCCACATTCTTTGCATTTG	0.289													12	18					0	0	0.010729	0	0
ZNF208	7757	broad.mit.edu	37	19	22154154	22154154	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:22154154C>T	uc002nqp.2	-	6	3447	c.3298G>A	c.(3298-3300)GAA>AAA	p.E1100K	ZNF208_uc002nqo.1_Intron	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				CCACATTCTTCACATTTGTAG	0.393													7	32					0	0	0.003080	0	0
ZNF208	7757	broad.mit.edu	37	19	22157127	22157127	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:22157127C>T	uc002nqp.2	-	4	858	c.709G>A	c.(709-711)GCC>ACC	p.A237T	ZNF208_uc002nqo.1_Intron|ZNF208_uc010ecw.1_5'Flank	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				TTACTAAAGGCTTTGCCACAT	0.383													15	26					0	0	0.003163	0	0
ZNF208	7757	broad.mit.edu	37	19	22157521	22157521	+	Missense_Mutation	SNP	T	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:22157521T>A	uc002nqp.2	-	4	464	c.315A>T	c.(313-315)AAA>AAT	p.K105N	ZNF208_uc002nqo.1_Intron|ZNF208_uc010ecw.1_5'Flank	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				CATGTCCACATTTTTCATACC	0.333													22	26					0	0	0.012319	0	0
ZNF98	148198	broad.mit.edu	37	19	22586269	22586269	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:22586269C>T	uc002nqt.2	-	2	198	c.76G>A	c.(76-78)GAG>AAG	p.E26K		NM_001098626	NP_001092096	A6NK75	ZNF98_HUMAN	zinc finger protein 98	26	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2		all_cancers(12;0.0536)|all_lung(12;0.00187)|Lung NSC(12;0.0019)|all_epithelial(12;0.00542)|Hepatocellular(1079;0.244)				CATTGCCACTCCTCCAGAGAG	0.403													14	43					0	0	0.001855	0	0
ZNF99	7652	broad.mit.edu	37	19	22939105	22939105	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:22939105C>T	uc010xrh.1	-	8	3013	c.3013G>A	c.(3013-3015)GGA>AGA	p.G1005R		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				GTTTTCCCTCCAGTATGAATT	0.373													22	27					0	0	0.014323	0	0
ZNF99	7652	broad.mit.edu	37	19	22940013	22940013	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:22940013G>A	uc010xrh.1	-	6	2318	c.2318C>T	c.(2317-2319)CCA>CTA	p.P773L		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				ACATTTGTATGGTTTCTTCCC	0.383													9	18					0	0	0.004482	0	0
ZNF99	7652	broad.mit.edu	37	19	22940045	22940045	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:22940045C>T	uc010xrh.1	-	6	2286	c.2286G>A	c.(2284-2286)AGG>AGA	p.R762R		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				TCTTATGTTTCCTAAGGGTTG	0.358													12	18					0	0	0.013537	0	0
ZNF99	7652	broad.mit.edu	37	19	22940532	22940532	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:22940532G>A	uc010xrh.1	-	5	1906	c.1906C>T	c.(1906-1908)CAT>TAT	p.H636Y		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				TCTCCAGTATGAATTATCTCA	0.358													6	15					0	0	0.003080	0	0
ZNF99	7652	broad.mit.edu	37	19	22951144	22951144	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:22951144C>T	uc010xrh.1	-	3	252	c.252G>A	c.(250-252)TGG>TGA	p.W84*		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				TCTTCATATTCCAAGGCTCTT	0.373													6	13					0	0	0.006214	0	0
Unknown	0	broad.mit.edu	37	19	23405549	23405549	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:23405549G>A	uc010xri.1	-	4	1616	c.1498C>T	c.(1498-1500)CAT>TAT	p.H500Y						SubName: Full=cDNA FLJ56866, moderately similar to Zinc finger protein 43;																		TCTCCAGTATGAATTTTCTTA	0.373													8	12					0	0	0.004482	0	0
POP4	10775	broad.mit.edu	37	19	30104821	30104821	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:30104821C>T	uc002nsf.2	+	6	524	c.468C>T	c.(466-468)ATC>ATT	p.I156I	POP4_uc002nsg.2_Silent_p.I75I	NM_006627	NP_006618	O95707	RPP29_HUMAN	processing of precursor 4	156					mRNA cleavage|rRNA processing|tRNA processing	nucleolar ribonuclease P complex|ribonuclease MRP complex	identical protein binding|ribonuclease P activity|RNA binding				0	Ovarian(5;0.000567)|Breast(6;0.0602)|Esophageal squamous(110;0.239)		UCEC - Uterine corpus endometrioid carcinoma (4;2.65e-06)|STAD - Stomach adenocarcinoma(5;1.7e-06)|Lung(7;0.0623)|LUAD - Lung adenocarcinoma(5;0.0989)|BRCA - Breast invasive adenocarcinoma(6;0.225)			TTACAGGAATCCTTCTACAGG	0.473													13	40					0	0	0.003163	0	0
ZNF536	9745	broad.mit.edu	37	19	30936569	30936569	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:30936569C>T	uc002nsu.1	+	2	2238	c.2100C>T	c.(2098-2100)GTC>GTT	p.V700V	ZNF536_uc010edd.1_Silent_p.V700V	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	700					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					AGAGCGGGGTCGGAGGCGGCC	0.692													10	22					0	0	0.006214	0	0
ZNF536	9745	broad.mit.edu	37	19	31039022	31039022	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:31039022C>T	uc002nsu.1	+	4	2634	c.2496C>T	c.(2494-2496)TTC>TTT	p.F832F	ZNF536_uc010edd.1_Silent_p.F832F	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	832					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					CTTCTCTGTTCATCAGGCCAG	0.587													30	62					0	0	0.008361	0	0
ZNF536	9745	broad.mit.edu	37	19	31039066	31039066	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:31039066G>A	uc002nsu.1	+	4	2678	c.2540G>A	c.(2539-2541)GGA>GAA	p.G847E	ZNF536_uc010edd.1_Missense_Mutation_p.G847E	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	847					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					GGTCTCCCTGGAATCGACTTC	0.577													23	56					0	0	0.004656	0	0
ZNF507	22847	broad.mit.edu	37	19	32873629	32873629	+	Silent	SNP	G	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:32873629G>T	uc002nte.2	+	7	2774	c.2502G>T	c.(2500-2502)CTG>CTT	p.L834L	ZNF507_uc002ntd.2_Silent_p.L834L	NM_001136156	NP_001129628	Q8TCN5	ZN507_HUMAN	zinc finger protein 507	834					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)|kidney(1)|central_nervous_system(1)|skin(1)	5	Esophageal squamous(110;0.162)					TAAGAGTTCTGGGGAAATCCC	0.403													22	53					3.08376e-08	3.31454e-08	0.003330	1	0
RGS9BP	388531	broad.mit.edu	37	19	33167782	33167782	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:33167782G>A	uc002ntp.1	+	1	1470	c.613G>A	c.(613-615)GGT>AGT	p.G205S	ANKRD27_uc002ntn.1_5'Flank|ANKRD27_uc002nto.1_5'Flank	NM_207391	NP_997274	Q6ZS82	R9BP_HUMAN	RGS9 anchor protein	205	Cytoplasmic (Potential).				negative regulation of signal transduction	integral to membrane				central_nervous_system(1)	1	Esophageal squamous(110;0.137)					GCGCGGGGGGGGTTGCGACCC	0.741													5	23					0	0	0.001168	0	0
SLC7A9	11136	broad.mit.edu	37	19	33353099	33353099	+	Missense_Mutation	SNP	G	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:33353099G>T	uc002ntv.3	-	6	746	c.629C>A	c.(628-630)TCT>TAT	p.S210Y	SLC7A9_uc002ntt.3_Intron|SLC7A9_uc002ntu.3_Missense_Mutation_p.S210Y|SLC7A9_uc002ntw.3_Intron	NM_001126335	NP_001119807	P82251	BAT1_HUMAN	solute carrier family 7, member 9	210	Extracellular (Potential).				blood coagulation|cellular amino acid metabolic process|ion transport|leukocyte migration|protein complex assembly	integral to plasma membrane	L-cystine transmembrane transporter activity|neutral amino acid transmembrane transporter activity|peptide antigen binding			skin(1)	1	Esophageal squamous(110;0.137)				L-Cystine(DB00138)	GCCCTCGAAAGAATTATCAAA	0.527													22	47					6.21321e-17	6.71209e-17	0.002780	1	0
LRP3	4037	broad.mit.edu	37	19	33697953	33697953	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:33697953C>T	uc010edh.2	+	7	1878	c.1785C>T	c.(1783-1785)TCC>TCT	p.S595S	LRP3_uc002nuk.3_Silent_p.S469S	NM_002333	NP_002324	O75074	LRP3_HUMAN	low density lipoprotein receptor-related protein	595	Cytoplasmic (Potential).				receptor-mediated endocytosis	coated pit|integral to membrane	receptor activity			pancreas(2)|ovary(1)	3	Esophageal squamous(110;0.137)					GGCACGCCTcccgccgggggc	0.562													3	2					0	0	0.004672	0	0
ZNF181	339318	broad.mit.edu	37	19	35231794	35231794	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:35231794C>T	uc002nvu.3	+	4	971	c.508C>T	c.(508-510)CTT>TTT	p.L170F	ZNF181_uc010xsa.1_Missense_Mutation_p.L169F|ZNF181_uc010xsb.1_Missense_Mutation_p.L169F|ZNF181_uc010xsc.1_Missense_Mutation_p.L105F	NM_001029997	NP_001025168	Q2M3W8	ZN181_HUMAN	zinc finger protein 181 isoform 1	170					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	all_lung(56;1.13e-07)|Lung NSC(56;1.81e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.138)			AAAGTCTACTCTTTCTGAACC	0.333													10	32					0	0	0.006214	0	0
FFAR3	2865	broad.mit.edu	37	19	35850271	35850271	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:35850271C>T	uc002nzd.2	+	2	554	c.479C>T	c.(478-480)TCC>TTC	p.S160F	FFAR3_uc010xsu.1_Intron	NM_005304	NP_005295	O14843	FFAR3_HUMAN	free fatty acid receptor 3	160	Extracellular (Potential).					integral to plasma membrane	G-protein coupled receptor activity|lipid binding				0	all_lung(56;9.78e-09)|Lung NSC(56;1.46e-08)|Esophageal squamous(110;0.162)		Epithelial(14;1.29e-19)|OV - Ovarian serous cystadenocarcinoma(14;4.63e-18)|all cancers(14;5.19e-17)|LUSC - Lung squamous cell carcinoma(66;0.0221)			GGGGACATCTCCCACAGCCAG	0.622													9	44					0	0	0.010729	0	0
Unknown	0	broad.mit.edu	37	19	35862963	35862963	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:35862963C>T	uc002nze.2	+	1	707	c.702C>T	c.(700-702)TTC>TTT	p.F234F		NM_005304	NP_005295			free fatty acid receptor 3																		TGCTCAACTTCCTTGTCTGCT	0.642													17	17					0	0	0.004990	0	0
ATP4A	495	broad.mit.edu	37	19	36050758	36050758	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:36050758G>A	uc002oal.1	-	7	1034	c.1005C>T	c.(1003-1005)TTC>TTT	p.F335F	ATP4A_uc010eee.1_5'Flank	NM_000704	NP_000695	P20648	ATP4A_HUMAN	hydrogen/potassium-exchanging ATPase 4A	335	Helical; (Potential).				ATP biosynthetic process|ATP hydrolysis coupled proton transport	integral to plasma membrane	ATP binding|hydrogen:potassium-exchanging ATPase activity|magnesium ion binding			ovary(1)	1	all_lung(56;1.05e-07)|Lung NSC(56;1.63e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0724)		Esomeprazole(DB00736)|Lansoprazole(DB00448)|Omeprazole(DB00338)|Pantoprazole(DB00213)|Rabeprazole(DB01129)|Trifluoperazine(DB00831)	CGATGGCCATGAAGAAGACCA	0.602													6	27					0	0	0.001168	0	0
MLL4	9757	broad.mit.edu	37	19	36214784	36214784	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:36214784C>T	uc010eei.2	+	9	3210	c.3210C>T	c.(3208-3210)CTC>CTT	p.L1070L		NM_014727	NP_055542	Q9UMN6	MLL4_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 4	1070					chromatin-mediated maintenance of transcription		DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(6)|breast(2)|ovary(1)|kidney(1)|skin(1)	11	all_lung(56;3.33e-07)|Lung NSC(56;5.02e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			AGGACTCCCTCCTGCAGCGCA	0.716													4	16					0	0	0.000602	0	0
MLL4	9757	broad.mit.edu	37	19	36224547	36224547	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:36224547C>T	uc010eei.2	+	30	7009	c.7009C>T	c.(7009-7011)CTG>TTG	p.L2337L		NM_014727	NP_055542	Q9UMN6	MLL4_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 4	2337					chromatin-mediated maintenance of transcription		DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(6)|breast(2)|ovary(1)|kidney(1)|skin(1)	11	all_lung(56;3.33e-07)|Lung NSC(56;5.02e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			GGTCCTTGACCTGGATCGGCC	0.657													4	9					0	0	0.001168	0	0
ARHGAP33	115703	broad.mit.edu	37	19	36278537	36278537	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:36278537C>T	uc002obs.1	+	21	2672	c.2587C>T	c.(2587-2589)CCC>TCC	p.P863S	ARHGAP33_uc002obt.1_Intron|ARHGAP33_uc010eel.2_Intron|ARHGAP33_uc002obv.1_Missense_Mutation_p.P612S	NM_052948	NP_443180	O14559	RHG33_HUMAN	sorting nexin 26	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell communication|protein transport|signal transduction	intracellular	GTPase activator activity|phosphatidylinositol binding|protein binding			skin(2)|ovary(1)|pancreas(1)	4						ATGTTCTGTCCCCTCACAGGT	0.706													18	40					0	0	0.012319	0	0
PRODH2	58510	broad.mit.edu	37	19	36290945	36290945	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:36290945G>A	uc002obx.1	-	11	1624	c.1606C>T	c.(1606-1608)CAC>TAC	p.H536Y	uc002obw.1_5'Flank	NM_021232	NP_067055	Q9UF12	PROD2_HUMAN	kidney and liver proline oxidase 1	536					glutamate biosynthetic process|proline catabolic process		proline dehydrogenase activity			ovary(2)	2	all_lung(56;2.87e-07)|Lung NSC(56;4.32e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			GGGTGCTAGTGGGGTATCCTT	0.622													6	16					0	0	0.001984	0	0
PRODH2	58510	broad.mit.edu	37	19	36290948	36290948	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:36290948G>A	uc002obx.1	-	11	1621	c.1603C>T	c.(1603-1605)CCC>TCC	p.P535S	uc002obw.1_5'Flank	NM_021232	NP_067055	Q9UF12	PROD2_HUMAN	kidney and liver proline oxidase 1	535					glutamate biosynthetic process|proline catabolic process		proline dehydrogenase activity			ovary(2)	2	all_lung(56;2.87e-07)|Lung NSC(56;4.32e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			TGCTAGTGGGGTATCCTTCGG	0.632													7	16					0	0	0.004482	0	0
KIRREL2	84063	broad.mit.edu	37	19	36357193	36357193	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:36357193C>T	uc002ocb.3	+	15	2138	c.1926C>T	c.(1924-1926)TTC>TTT	p.F642F	KIRREL2_uc002obz.3_Intron|KIRREL2_uc002oca.3_Intron|KIRREL2_uc002occ.3_Silent_p.F589F|KIRREL2_uc002ocd.3_Silent_p.F604F|APLP1_uc010xsz.1_5'Flank|APLP1_uc002oce.2_5'Flank|APLP1_uc002ocf.2_5'Flank|APLP1_uc002ocg.2_5'Flank	NM_199180	NP_954649	Q6UWL6	KIRR2_HUMAN	kin of IRRE-like 2 isoform c	642	Pro-rich.|Cytoplasmic (Potential).				cell adhesion	integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)|skin(1)	3	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			TCTATGACTTCAACCCACACC	0.617													18	44					0	0	0.004990	0	0
ZFP14	57677	broad.mit.edu	37	19	36832048	36832048	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:36832048G>A	uc002odx.1	-	4	773	c.680C>T	c.(679-681)CCC>CTC	p.P227L	ZFP14_uc010xtd.1_Missense_Mutation_p.P228L|ZFP14_uc010eex.1_Missense_Mutation_p.P227L	NM_020917	NP_065968	Q9HCL3	ZFP14_HUMAN	zinc finger protein 14-like	227					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	Esophageal squamous(110;0.162)					ACATTCATAGGGTTTCTCACC	0.438													13	35					0	0	0.013537	0	0
ZNF566	84924	broad.mit.edu	37	19	36940123	36940123	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:36940123G>A	uc002oea.3	-	5	1095	c.1013C>T	c.(1012-1014)CCT>CTT	p.P338L	ZNF566_uc010xte.1_Missense_Mutation_p.P338L|ZNF566_uc010xtf.1_Missense_Mutation_p.P339L|ZNF566_uc002oeb.3_Missense_Mutation_p.P338L|ZNF566_uc002oec.3_Missense_Mutation_p.P234L|ZNF566_uc010xtg.1_Missense_Mutation_p.P234L	NM_032838	NP_116227	Q969W8	ZN566_HUMAN	zinc finger protein 566 isoform 1	338	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Esophageal squamous(110;0.162)					ACATTCGTAAGGTTTCTCACC	0.393													12	31					0	0	0.010729	0	0
ZNF585A	199704	broad.mit.edu	37	19	37643740	37643740	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:37643740G>A	uc002ofo.1	-	5	1292	c.1061C>T	c.(1060-1062)TCC>TTC	p.S354F	ZNF585A_uc002ofm.1_Missense_Mutation_p.S299F|ZNF585A_uc002ofn.1_Missense_Mutation_p.S299F	NM_199126	NP_954577	Q6P3V2	Z585A_HUMAN	zinc finger protein 585A	354	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			AGTACATATGGAAGATTTCTC	0.398													39	62					0	0	0.008740	0	0
ZNF569	148266	broad.mit.edu	37	19	37904098	37904098	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:37904098G>A	uc002ogi.2	-	6	2020	c.1462C>T	c.(1462-1464)CAT>TAT	p.H488Y	ZNF569_uc002ogh.2_Missense_Mutation_p.H329Y|ZNF569_uc002ogj.2_Missense_Mutation_p.H512Y	NM_152484	NP_689697	Q5MCW4	ZN569_HUMAN	zinc finger protein 569	488	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(2)|skin(1)	3			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			TCTCCAGAATGAATTTTTTCA	0.373													9	24					0	0	0.006214	0	0
PPP1R14A	94274	broad.mit.edu	37	19	38743536	38743536	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:38743536G>A	uc002ohq.2	-	2	473	c.280C>T	c.(280-282)CAG>TAG	p.Q94*	PPP1R14A_uc010efv.2_Intron	NM_033256	NP_150281	Q96A00	PP14A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	94	Inhibitory.				regulation of phosphorylation	cytoplasm	protein binding|protein phosphatase inhibitor activity				0	all_cancers(60;9.57e-07)		Lung(45;0.000246)|LUSC - Lung squamous cell carcinoma(53;0.000292)			CCACCTACCTGGATTTTCCGG	0.438													67	152					0	0	0.014410	0	0
SPRED3	399473	broad.mit.edu	37	19	38881044	38881044	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:38881044C>T	uc002oim.2	+	1	106	c.102C>T	c.(100-102)GTC>GTT	p.V34V	GGN_uc002oij.1_5'Flank|GGN_uc002oik.1_5'Flank|GGN_uc010efy.1_5'Flank|SPRED3_uc002oil.1_Silent_p.V34V	NM_001042522	NP_001035987	Q2MJR0	SPRE3_HUMAN	sprouty-related, EVH1 domain containing 3	34	WH1.				multicellular organismal development					central_nervous_system(2)|lung(1)|skin(1)	4	all_cancers(60;3.4e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)			TGTGTCGGGTCCGAGGGGCCA	0.731													9	12					0	0	0.004482	0	0
RYR1	6261	broad.mit.edu	37	19	38951140	38951140	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:38951140G>A	uc002oit.2	+	20	2616	c.2486G>A	c.(2485-2487)CGA>CAA	p.R829Q	RYR1_uc002oiu.2_Missense_Mutation_p.R829Q	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	829	Cytoplasmic.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	AAGGAGTATCGACGGGAGGGG	0.627													50	62					0	0	0.014410	0	0
RYR1	6261	broad.mit.edu	37	19	38991630	38991630	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:38991630G>A	uc002oit.2	+	47	7744	c.7614G>A	c.(7612-7614)ACG>ACA	p.T2538T	RYR1_uc002oiu.2_Silent_p.T2538T|RYR1_uc002oiv.1_5'UTR	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	2538	Cytoplasmic.|6 X approximate repeats.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	CGCTGGACACGGTGAGCAACC	0.617													6	19					0	0	0.001168	0	0
RYR1	6261	broad.mit.edu	37	19	39018290	39018290	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:39018290G>A	uc002oit.2	+	73	10820	c.10690G>A	c.(10690-10692)GAA>AAA	p.E3564K	RYR1_uc002oiu.2_Missense_Mutation_p.E3559K|RYR1_uc002oiv.1_Missense_Mutation_p.E479K|RYR1_uc010xuf.1_Missense_Mutation_p.E484K	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	3564					muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	CCTTCAGGTCGAAGGCTCCCC	0.642													13	31					0	0	0.004007	0	0
FBXO27	126433	broad.mit.edu	37	19	39517545	39517545	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:39517545G>A	uc002okh.2	-	5	755	c.673C>T	c.(673-675)CCC>TCC	p.P225S		NM_178820	NP_849142	Q8NI29	FBX27_HUMAN	F-box protein 27	225	FBA.				protein catabolic process	SCF ubiquitin ligase complex	glycoprotein binding			ovary(1)	1	all_cancers(60;3.79e-07)|all_lung(34;1.26e-07)|Lung NSC(34;1.46e-07)|all_epithelial(25;4.69e-07)|Ovarian(47;0.0454)		Lung(45;0.000419)|LUSC - Lung squamous cell carcinoma(53;0.000554)			TGCGGGATGGGATCAGGCACA	0.493													52	82					0	0	0.014410	0	0
PAPL	390928	broad.mit.edu	37	19	39591400	39591400	+	Missense_Mutation	SNP	C	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:39591400C>A	uc002oki.2	+	7	988	c.714C>A	c.(712-714)CAC>CAA	p.H238Q	PAPL_uc010egl.2_Missense_Mutation_p.T197K	NM_001004318	NP_001004318	Q6ZNF0	PAPL_HUMAN	iron/zinc purple acid phosphatase-like protein	238						extracellular region	acid phosphatase activity|metal ion binding				0						GTCCCGCCCACATCATCTCCT	0.607													14	35					3.27435e-08	3.51808e-08	0.002450	1	0
PAK4	10298	broad.mit.edu	37	19	39669193	39669193	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:39669193C>T	uc002okj.1	+	11	2211	c.1750C>T	c.(1750-1752)CTC>TTC	p.L584F	PAK4_uc002okl.1_Missense_Mutation_p.L584F|PAK4_uc002okn.1_Missense_Mutation_p.L584F|PAK4_uc002okm.1_Missense_Mutation_p.L431F|PAK4_uc002oko.1_Missense_Mutation_p.L431F|PAK4_uc002okp.1_Missense_Mutation_p.L494F	NM_001014831	NP_001014831	O96013	PAK4_HUMAN	p21-activated kinase 4 isoform 1	584					cellular component movement|signal transduction	Golgi apparatus	ATP binding|protein binding|protein serine/threonine kinase activity			lung(3)|ovary(1)	4	all_cancers(60;1.03e-07)|all_epithelial(25;9.66e-08)|all_lung(34;1.58e-07)|Lung NSC(34;1.88e-07)|Ovarian(47;0.0454)		Epithelial(26;4.82e-25)|all cancers(26;2.94e-22)|Lung(45;0.000797)|LUSC - Lung squamous cell carcinoma(53;0.00113)			CATCGTGCCCCTCATGCGCCA	0.716													8	24					0	0	0.003080	0	0
LRFN1	57622	broad.mit.edu	37	19	39805083	39805083	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:39805083G>A	uc002okw.2	-	1	894	c.894C>T	c.(892-894)CCC>CCT	p.P298P		NM_020862	NP_065913	Q9P244	LRFN1_HUMAN	leucine rich repeat and fibronectin type III	298	LRRCT.|Extracellular (Potential).					cell junction|integral to membrane|postsynaptic density|postsynaptic membrane				ovary(2)	2	all_cancers(60;1.85e-07)|all_lung(34;4.03e-08)|Lung NSC(34;4.66e-08)|all_epithelial(25;6.4e-07)|Ovarian(47;0.0512)		Epithelial(26;1.96e-27)|all cancers(26;2.05e-24)|Lung(45;0.000278)|LUSC - Lung squamous cell carcinoma(53;0.000335)			TGATCAGCGGGGGCTCACACA	0.711													8	7					0	0	0.013537	0	0
SAMD4B	55095	broad.mit.edu	37	19	39866354	39866355	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:39866354_39866355CC>TT	uc002olb.2	+	7	1767_1768	c.732_733CC>TT	c.(730-735)CCCCAG>CCTTAG	p.Q245*	SAMD4B_uc002ola.2_Nonsense_Mutation_p.Q245*	NM_018028	NP_060498	Q5PRF9	SMAG2_HUMAN	sterile alpha motif domain containing 4B	245							protein binding				0	all_cancers(60;2.5e-07)|all_lung(34;4.03e-08)|Lung NSC(34;4.66e-08)|all_epithelial(25;6.4e-07)|Ovarian(47;0.0512)		Epithelial(26;9.6e-28)|all cancers(26;9.14e-25)|Lung(45;0.000168)|LUSC - Lung squamous cell carcinoma(53;0.000199)			CTACAAGCCCCCAGGTCCCTGG	0.614													57	133					0	0	0.004672	0	0
LGALS13	29124	broad.mit.edu	37	19	40097951	40097951	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:40097951C>T	uc002omb.2	+	4	432	c.392C>T	c.(391-393)TCC>TTC	p.S131F		NM_013268	NP_037400	Q9UHV8	PP13_HUMAN	galectin-13	131	Galectin.				lipid catabolic process|phospholipid metabolic process		carboxylesterase activity|lysophospholipase activity|sugar binding			ovary(1)	1	all_cancers(60;1.77e-05)|all_lung(34;5.38e-08)|Lung NSC(34;6.37e-08)|Ovarian(47;0.116)		Epithelial(26;3.28e-26)|OV - Ovarian serous cystadenocarcinoma(5;7.31e-25)|all cancers(26;1.15e-23)|LUSC - Lung squamous cell carcinoma(53;0.00281)			AGAGATATCTCCCTGACCTCA	0.473													17	42					0	0	0.006122	0	0
FCGBP	8857	broad.mit.edu	37	19	40368658	40368658	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:40368658G>A	uc002omp.3	-	28	12698	c.12690C>T	c.(12688-12690)TTC>TTT	p.F4230F		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	4230	VWFD 10.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			TGCCATTAGGGAAGACCTGGT	0.642													37	234					0	0	0.014410	0	0
FCGBP	8857	broad.mit.edu	37	19	40384098	40384098	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:40384098G>A	uc002omp.3	-	21	9520	c.9512C>T	c.(9511-9513)CCT>CTT	p.P3171L		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	3171	TIL 7.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			AAGGGGTGCAGGGGACGGACA	0.632													38	286					0	0	0.014410	0	0
FCGBP	8857	broad.mit.edu	37	19	40396021	40396021	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:40396021G>A	uc002omp.3	-	15	7384	c.7376C>T	c.(7375-7377)CCC>CTC	p.P2459L		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	2459	VWFD 6.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			GGTGTAGTGGGGATCTCCCGA	0.677													5	56					0	0	0.000602	0	0
FCGBP	8857	broad.mit.edu	37	19	40411743	40411743	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:40411743C>T	uc002omp.3	-	7	3893	c.3885G>A	c.(3883-3885)CAG>CAA	p.Q1295Q		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	1295	VWFD 3.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			CCACGTTCTCCTGCAGGACGG	0.637													22	42					0	0	0.004878	0	0
ZNF780A	284323	broad.mit.edu	37	19	40581067	40581067	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:40581067G>A	uc002omy.2	-	6	1507	c.1282C>T	c.(1282-1284)CGT>TGT	p.R428C	ZNF780A_uc002omw.3_Intron|ZNF780A_uc002omz.2_Missense_Mutation_p.R428C|ZNF780A_uc010xvh.1_Missense_Mutation_p.R429C	NM_001010880	NP_001010880	O75290	Z780A_HUMAN	zinc finger protein 780A isoform b	428	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(60;9.55e-06)|all_lung(34;1.17e-07)|Lung NSC(34;1.41e-07)|Ovarian(47;0.0925)					TGTGCACCACGATTAAAGCCT	0.383													46	105					0	0	0.013114	0	0
SPTBN4	57731	broad.mit.edu	37	19	40978566	40978566	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:40978566G>A	uc002ony.2	+	2	124	c.38G>A	c.(37-39)GGC>GAC	p.G13D	SPTBN4_uc002onx.2_Missense_Mutation_p.G13D|SPTBN4_uc002onz.2_Missense_Mutation_p.G13D	NM_020971	NP_066022	Q9H254	SPTN4_HUMAN	spectrin, beta, non-erythrocytic 4 isoform	13	Actin-binding.				actin filament capping|axon guidance|cytoskeletal anchoring at plasma membrane|vesicle-mediated transport	cytosol|nuclear matrix|PML body|spectrin	actin binding|ankyrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(1)|skin(1)	5			Lung(22;0.000114)|LUSC - Lung squamous cell carcinoma(20;0.000384)			AACATGGAGGGCCTGCCTGCT	0.512													10	14					0	0	0.002450	0	0
SNRPA	6626	broad.mit.edu	37	19	41269505	41269505	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:41269505C>T	uc002ooz.2	+	5	1149	c.614C>T	c.(613-615)CCA>CTA	p.P205L	SNRPA_uc002opa.2_Missense_Mutation_p.P155L	NM_004596	NP_004587	P09012	SNRPA_HUMAN	small nuclear ribonucleoprotein polypeptide A	205	Pro-rich.					nucleoplasm|spliceosomal complex	nucleotide binding|protein binding|RNA binding			skin(2)|ovary(1)|central_nervous_system(1)	4			LUSC - Lung squamous cell carcinoma(20;0.000219)|Lung(22;0.000959)			TCTGAGAATCCACCGAATCAC	0.502													25	80					0	0	0.005443	0	0
CYP2B7P1	1556	broad.mit.edu	37	19	41447371	41447372	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:41447371_41447372GG>AA	uc010ehh.1	+	5	824_825	c.816_817GG>AA	c.(814-819)ATGGAA>ATAAAA	p.272_273ME>IK	CYP2A7_uc002opo.2_Intron|CYP2B7P1_uc002opq.2_RNA					SubName: Full=Cytochrome P450, family 2, subfamily B, polypeptide 6;											ovary(1)|skin(1)	2						TGCTCCACATGGAAAAAGTGGG	0.322													23	32					0	0	0.004672	0	0
CYP2F1	1572	broad.mit.edu	37	19	41627997	41627997	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:41627997C>T	uc002opu.1	+	6	837	c.781C>T	c.(781-783)CCC>TCC	p.P261S	CYP2F1_uc010xvw.1_Missense_Mutation_p.P47S|CYP2F1_uc010xvv.1_Missense_Mutation_p.P261S|CYP2F1_uc002opv.1_RNA	NM_000774	NP_000765	P24903	CP2F1_HUMAN	cytochrome P450, family 2, subfamily F,	261					naphthalene metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding				0						CCCCAGATCTCCCCGGGACTT	0.587													5	40					0	0	0.000602	0	0
CYP2S1	29785	broad.mit.edu	37	19	41704514	41704515	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:41704514_41704515CC>TT	uc002opw.2	+	4	696_697	c.641_642CC>TT	c.(640-642)TCC>TTT	p.S214F	CYP2F1_uc010xvw.1_Intron|CYP2S1_uc010xvx.1_Intron	NM_030622	NP_085125	Q96SQ9	CP2S1_HUMAN	cytochrome P450, family 2, subfamily S,	214					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|retinoic acid 4-hydroxylase activity			skin(1)	1						GGAGTCAGCTCCCAGGGGGGTC	0.614													33	63					0	0	0.004672	0	0
AXL	558	broad.mit.edu	37	19	41743986	41743986	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:41743986C>T	uc010ehj.2	+	7	1111	c.921C>T	c.(919-921)ATC>ATT	p.I307I	CYP2F1_uc010xvw.1_Intron|AXL_uc010ehi.1_Silent_p.I307I|AXL_uc010ehk.2_Silent_p.I307I	NM_021913	NP_068713	P30530	UFO_HUMAN	AXL receptor tyrosine kinase isoform 1	307	Extracellular (Potential).|Fibronectin type-III 1.					integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(4)|stomach(3)|ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)	13						CTTATCACATCCGCGTGGCAT	0.652													49	88					0	0	0.014410	0	0
HNRNPUL1	11100	broad.mit.edu	37	19	41807588	41807588	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:41807588C>T	uc002oqb.3	+	11	1955	c.1666C>T	c.(1666-1668)CAT>TAT	p.H556Y	CYP2F1_uc010xvw.1_Intron|HNRNPUL1_uc002opz.3_Missense_Mutation_p.H456Y|HNRNPUL1_uc002oqa.3_Missense_Mutation_p.H456Y|HNRNPUL1_uc010ehm.2_Missense_Mutation_p.H556Y|HNRNPUL1_uc002oqc.3_Missense_Mutation_p.H442Y|HNRNPUL1_uc002oqe.3_Intron|HNRNPUL1_uc002oqd.3_Missense_Mutation_p.H456Y|HNRNPUL1_uc010ehn.2_Missense_Mutation_p.H456Y|HNRNPUL1_uc010eho.2_Missense_Mutation_p.H456Y|HNRNPUL1_uc010xvy.1_Missense_Mutation_p.H456Y|HNRNPUL1_uc010ehp.2_Missense_Mutation_p.H412Y|HNRNPUL1_uc002oqf.3_5'Flank	NM_007040	NP_008971	Q9BUJ2	HNRL1_HUMAN	heterogeneous nuclear ribonucleoprotein U-like 1	556	Necessary for interaction with TP53.|Necessary for interaction with BRD7 and transcriptional activation.				nuclear mRNA splicing, via spliceosome|regulation of transcription, DNA-dependent|response to virus|transcription, DNA-dependent	heterogeneous nuclear ribonucleoprotein complex|nucleoplasm	enzyme binding|RNA binding			central_nervous_system(1)|skin(1)	2						TGTCCCAGATCATGCGGTCTT	0.483													16	29					0	0	0.004007	0	0
CEACAM21	90273	broad.mit.edu	37	19	42083877	42083877	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:42083877G>A	uc002ore.3	+	2	486	c.390G>A	c.(388-390)CAG>CAA	p.Q130Q	CEACAM21_uc002orc.1_RNA|CEACAM21_uc002ord.1_RNA|CEACAM21_uc002orf.2_RNA|CEACAM21_uc002org.3_Silent_p.Q130Q	NM_001098506	NP_001091976	Q3KPI0	CEA21_HUMAN	carcinoembryonic antigen-related cell adhesion	130	Extracellular (Potential).					integral to membrane				ovary(1)	1						GAAATTCTCAGATTGAACAGG	0.498													9	46					0	0	0.006214	0	0
CEACAM6	4680	broad.mit.edu	37	19	42266060	42266060	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:42266060C>T	uc002orm.2	+	4	1036	c.887C>T	c.(886-888)TCC>TTC	p.S296F		NM_002483	NP_002474	P40199	CEAM6_HUMAN	carcinoembryonic antigen-related cell adhesion	296	Ig-like C2-type 2.				cell-cell signaling|signal transduction	anchored to membrane|integral to plasma membrane				ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(3;0.00575)|all cancers(3;0.0352)|Epithelial(262;0.0797)		AATAGCGGATCCTATATGTGC	0.473													18	44					0	0	0.008871	0	0
ATP1A3	478	broad.mit.edu	37	19	42479800	42479800	+	Silent	SNP	G	A	A	rs143307687		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:42479800G>A	uc002osg.2	-	16	2398	c.2244C>T	c.(2242-2244)ATC>ATT	p.I748I	ATP1A3_uc010xwf.1_Silent_p.I759I|ATP1A3_uc010xwg.1_Silent_p.I718I|ATP1A3_uc010xwh.1_Silent_p.I761I|ATP1A3_uc002osh.2_Silent_p.I748I	NM_152296	NP_689509	P13637	AT1A3_HUMAN	Na+/K+ -ATPase alpha 3 subunit	748	Cytoplasmic (Potential).				ATP biosynthetic process	endoplasmic reticulum|Golgi apparatus	ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			ovary(1)|pancreas(1)	2						CCCCTGTGACGATGGAGGCAA	0.632													14	43					0	0	0.002450	0	0
CIC	23152	broad.mit.edu	37	19	42798205	42798205	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:42798205C>T	uc002otf.1	+	17	4199	c.4159C>T	c.(4159-4161)CTG>TTG	p.L1387L		NM_015125	NP_055940	Q96RK0	CIC_HUMAN	capicua homolog	1387					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding			ovary(4)|breast(4)|lung(1)|central_nervous_system(1)|skin(1)	11		Prostate(69;0.00682)				CCGGGCCATCCTGGGCTCTTA	0.637			T	DUX4	soft tissue sarcoma								34	60					0	0	0.012213	0	0
CIC	23152	broad.mit.edu	37	19	42798877	42798877	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:42798877C>T	uc002otf.1	+	19	4489	c.4449C>T	c.(4447-4449)TTC>TTT	p.F1483F		NM_015125	NP_055940	Q96RK0	CIC_HUMAN	capicua homolog	1483					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding			ovary(4)|breast(4)|lung(1)|central_nervous_system(1)|skin(1)	11		Prostate(69;0.00682)				ACCATGGCTTCTTCCCGTCAG	0.592			T	DUX4	soft tissue sarcoma								29	54					0	0	0.013726	0	0
LIPE	3991	broad.mit.edu	37	19	42910379	42910379	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:42910379G>A	uc002otr.2	-	7	2576	c.2299C>T	c.(2299-2301)CTG>TTG	p.L767L	uc010eif.1_Intron	NM_005357	NP_005348	Q05469	LIPS_HUMAN	hormone-sensitive lipase	767					cholesterol metabolic process|protein phosphorylation|triglyceride catabolic process	caveola|cytosol	hormone-sensitive lipase activity|protein binding			ovary(1)|breast(1)	2		Prostate(69;0.00682)				AGGCTCAGCAGGCGGGAGGGA	0.657													15	25					0	0	0.002450	0	0
PSG3	5671	broad.mit.edu	37	19	43242934	43242934	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:43242934G>A	uc002oue.2	-	2	504	c.372C>T	c.(370-372)ATC>ATT	p.I124I	PSG3_uc002ouf.2_RNA|PSG1_uc002oug.1_Intron|PSG3_uc010eil.2_Silent_p.I146I	NM_021016	NP_066296	Q16557	PSG3_HUMAN	pregnancy specific beta-1-glycoprotein 3	124	Ig-like V-type.				defense response|female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00682)				CTCGCTTTACGATGTGTAAGG	0.517													48	288					0	0	0.014410	0	0
PSG6	5675	broad.mit.edu	37	19	43411915	43411915	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:43411915C>T	uc002ovj.1	-	4	850	c.798G>A	c.(796-798)CGG>CGA	p.R266R	PSG3_uc002ouf.2_Intron|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_Intron|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Silent_p.R273R|PSG6_uc002ovi.2_Silent_p.R267R|PSG6_uc010xwk.1_Silent_p.R106R|PSG11_uc002ovk.1_Intron|PSG6_uc002ove.1_Silent_p.R56R|PSG6_uc002ovf.1_Intron|PSG6_uc002ovg.1_Silent_p.R266R	NM_002782	NP_002773	Q00889	PSG6_HUMAN	pregnancy specific beta-1-glycoprotein 6 isoform	266	Ig-like C2-type 2.				female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00899)				AGGTGTAGTTCCGACTCTTAG	0.498													96	169					0	0	0.014410	0	0
PSG6	5675	broad.mit.edu	37	19	43421897	43421897	+	Missense_Mutation	SNP	C	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:43421897C>A	uc002ovj.1	-	1	100	c.48G>T	c.(46-48)AAG>AAT	p.K16N	PSG3_uc002ouf.2_Intron|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_Intron|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Intron|PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG11_uc002ovk.1_Intron|PSG6_uc002ovf.1_Missense_Mutation_p.K16N|PSG6_uc002ovg.1_Missense_Mutation_p.K16N	NM_002782	NP_002773	Q00889	PSG6_HUMAN	pregnancy specific beta-1-glycoprotein 6 isoform	16					female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00899)				GCAGGAGCCCCTTCCAGGTGA	0.587													34	75					2.87052e-16	3.09984e-16	0.005524	1	0
PSG7	5676	broad.mit.edu	37	19	43430759	43430759	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:43430759C>T	uc002ovl.3	-	5	921	c.819G>A	c.(817-819)TGG>TGA	p.W273*	PSG3_uc002ouf.2_Intron|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_RNA|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Intron|PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG11_uc002ovk.1_Intron|PSG7_uc010xwl.1_Nonsense_Mutation_p.W151*	NM_002783	NP_002774	Q13046	PSG7_HUMAN	pregnancy specific beta-1-glycoprotein 7	273	Ig-like C2-type 2.				female pregnancy	extracellular region					0		Prostate(69;0.00682)				CATTTAGCCACCAAATGTAGG	0.478													104	219					0	0	0.014410	0	0
PSG6	5675	broad.mit.edu	37	19	43528851	43528851	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:43528851G>A	uc002ovh.1	-	2	529	c.440C>T	c.(439-441)ACC>ATC	p.T147I	PSG11_uc002ouw.2_Missense_Mutation_p.T147I|PSG10_uc002ouv.1_Intron|PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG11_uc002ovk.1_Missense_Mutation_p.T147I|PSG11_uc002ovm.1_Missense_Mutation_p.T141I|PSG11_uc002ovn.1_Missense_Mutation_p.T147I|PSG11_uc002ovo.1_Intron|PSG11_uc002ovp.1_Intron			Q00889	PSG6_HUMAN	SubName: Full=Putative uncharacterized protein PSG6;	140	Ig-like V-type.				female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00899)				ACGGTATAAGGTGAAGGTGAA	0.507													49	91					0	0	0.014410	0	0
PSG2	5670	broad.mit.edu	37	19	43576076	43576076	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:43576076G>A	uc002ovr.2	-	4	833	c.740C>T	c.(739-741)TCA>TTA	p.S247L	PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG2_uc002ovq.3_Missense_Mutation_p.S247L|PSG2_uc010eiq.1_Missense_Mutation_p.S247L|PSG2_uc002ovs.3_Missense_Mutation_p.S247L|PSG2_uc002ovt.3_Missense_Mutation_p.S247L	NM_031246	NP_112536	P11465	PSG2_HUMAN	pregnancy specific beta-1-glycoprotein 2	247	Ig-like C2-type 2.				cell migration|female pregnancy	extracellular region					0		Prostate(69;0.00682)				ATTGGTGTATGAAGGGTGAAT	0.483													18	115					0	0	0.008871	0	0
PSG9	5678	broad.mit.edu	37	19	43762487	43762487	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:43762487C>T	uc002owd.3	-	5	1209	c.1110G>A	c.(1108-1110)GGG>GGA	p.G370G	PSG9_uc002owe.3_Silent_p.G277G|PSG9_uc010xwm.1_Silent_p.G277G|PSG9_uc002owf.3_Silent_p.G184G|PSG9_uc002owg.2_Silent_p.G277G|PSG9_uc002owh.2_Silent_p.G184G	NM_002784	NP_002775	Q00887	PSG9_HUMAN	pregnancy specific beta-1-glycoprotein 9	370	Ig-like C2-type 3.				female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00682)				GCTGAAACTTCCCATTAATTG	0.443													70	145					0	0	0.014410	0	0
CD177	57126	broad.mit.edu	37	19	43866322	43866322	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:43866322G>A	uc002owi.2	+	10	1206	c.1164G>A	c.(1162-1164)GGG>GGA	p.G388G	CD177_uc010eis.2_RNA|CD177_uc002owj.2_RNA	NM_020406	NP_065139	Q8N6Q3	CD177_HUMAN	CD177 molecule precursor	388					blood coagulation|leukocyte migration	anchored to membrane|plasma membrane				central_nervous_system(1)	1		Prostate(69;0.00682)				GACAAATCGGGATCTTCTCTG	0.592													29	69					0	0	0.003271	0	0
IRGC	56269	broad.mit.edu	37	19	44223287	44223287	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:44223287G>A	uc002oxh.2	+	2	724	c.577G>A	c.(577-579)GAG>AAG	p.E193K		NM_019612	NP_062558	Q6NXR0	IIGP5_HUMAN	immunity-related GTPase family, cinema	193						membrane	GTP binding|hydrolase activity, acting on acid anhydrides			ovary(1)|central_nervous_system(1)|skin(1)	3		Prostate(69;0.0435)				TGTCCTGCAGGAGATCCGAGA	0.677													18	53					0	0	0.012319	0	0
ZNF45	7596	broad.mit.edu	37	19	44418226	44418226	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:44418226G>A	uc002oxu.1	-	4	1461	c.1362C>T	c.(1360-1362)AGC>AGT	p.S454S	ZNF45_uc002oxw.1_Silent_p.S454S|ZNF45_uc002oxv.1_Silent_p.S454S	NM_003425	NP_003416	Q02386	ZNF45_HUMAN	zinc finger protein 45	454	C2H2-type 11.				multicellular organismal development	nucleoplasm	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1						TTGAGGCCTGGCTGAAGCCCT	0.478													12	35					0	0	0.002450	0	0
ZNF221	7638	broad.mit.edu	37	19	44466927	44466927	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:44466927C>T	uc002oxx.2	+	3	377	c.49C>T	c.(49-51)CCT>TCT	p.P17S	ZNF221_uc010ejb.1_Missense_Mutation_p.P17S|ZNF221_uc010xws.1_Missense_Mutation_p.P17S	NM_013359	NP_037491	Q9UK13	ZN221_HUMAN	zinc finger protein 221	17					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1		Prostate(69;0.0352)				CTGCAAATTCCCTGAAGTAGA	0.403													4	41					0	0	0.001168	0	0
ZNF284	342909	broad.mit.edu	37	19	44585252	44585252	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:44585252C>T	uc002oyg.1	+	3	316	c.100C>T	c.(100-102)CGA>TGA	p.R34*	ZNF284_uc010ejd.2_RNA	NM_001037813	NP_001032902	Q2VY69	ZN284_HUMAN	zinc finger protein 284	34	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0435)				GAAGCTGTATCGAGATGTCAT	0.532													38	69					0	0	0.005524	0	0
ZNF235	9310	broad.mit.edu	37	19	44792651	44792651	+	Missense_Mutation	SNP	G	A	A	rs144837895	byFrequency	TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:44792651G>A	uc002oza.3	-	5	1040	c.937C>T	c.(937-939)CGT>TGT	p.R313C	ZNF235_uc002oyx.1_Intron|ZNF235_uc010eji.2_Intron|ZNF235_uc002ozb.3_Missense_Mutation_p.R309C|ZNF235_uc010xwx.1_Missense_Mutation_p.R227C	NM_004234	NP_004225	Q14590	ZN235_HUMAN	zinc finger protein 93 homolog	313					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|large_intestine(1)	3		Prostate(69;0.0352)|all_neural(266;0.116)				TTCCCAGTACGAACACTTTGT	0.438													28	47					0	0	0.007291	0	0
ZFP112	7771	broad.mit.edu	37	19	44833723	44833723	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:44833723G>A	uc010ejj.2	-	5	718	c.605C>T	c.(604-606)TCC>TTC	p.S202F	ZFP112_uc002ozc.3_Missense_Mutation_p.S196F|ZFP112_uc010xwy.1_Missense_Mutation_p.S219F|ZFP112_uc010xwz.1_Missense_Mutation_p.S201F	NM_001083335	NP_001076804	Q9UJU3	ZF112_HUMAN	zinc finger protein 228 isoform 1	202					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(2)	5						ATTTTTCATGGAAATTTGCTG	0.378													29	58					0	0	0.008361	0	0
ZNF229	7772	broad.mit.edu	37	19	44936407	44936407	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:44936407C>T	uc002oze.1	-	5	662	c.228G>A	c.(226-228)AGG>AGA	p.R76R	ZNF229_uc010ejk.1_5'UTR|ZNF229_uc010ejl.1_Intron	NM_014518	NP_055333	Q9UJW7	ZN229_HUMAN	zinc finger protein 229	76	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|pancreas(1)	4		Prostate(69;0.0352)				CCAGAGGATTCCTCTCACCCA	0.443													28	66					0	0	0.008361	0	0
CEACAM20	125931	broad.mit.edu	37	19	45028262	45028262	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:45028262C>T	uc010ejn.1	-	3	245	c.229G>A	c.(229-231)GGC>AGC	p.G77S	CEACAM20_uc010ejo.1_Missense_Mutation_p.G77S|CEACAM20_uc010ejp.1_Missense_Mutation_p.G77S|CEACAM20_uc010ejq.1_Missense_Mutation_p.G77S	NM_001102597	NP_001096067	Q6UY09	CEA20_HUMAN	carcinoembryonic antigen-related cell adhesion	77	Ig-like C2-type 1.|Extracellular (Potential).					integral to membrane				large_intestine(2)	2		Prostate(69;0.0352)				ATGGCAGTGCCTGGGCTGACT	0.512													120	259					0	0	0.014410	0	0
PVR	5817	broad.mit.edu	37	19	45153195	45153195	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:45153195C>T	uc002ozm.2	+	3	841	c.542C>T	c.(541-543)TCA>TTA	p.S181L	PVR_uc010ejs.2_Missense_Mutation_p.S181L|PVR_uc010xxb.1_Missense_Mutation_p.S181L|PVR_uc010xxc.1_Missense_Mutation_p.S181L|PVR_uc002ozn.2_Missense_Mutation_p.S126L	NM_006505	NP_006496	P15151	PVR_HUMAN	poliovirus receptor isoform alpha	181	Extracellular (Potential).|Ig-like C2-type 1.				adherens junction organization|cell adhesion|cell junction assembly|interspecies interaction between organisms|positive regulation of natural killer cell mediated cytotoxicity directed against tumor cell target|susceptibility to natural killer cell mediated cytotoxicity|susceptibility to T cell mediated cytotoxicity	cell junction|cell surface|cytoplasm|extracellular space|integral to membrane|nucleus	cell adhesion molecule binding|receptor activity				0	Lung NSC(12;0.00608)|all_lung(12;0.0148)	Medulloblastoma(540;0.0425)|Ovarian(192;0.0728)|Prostate(69;0.081)|all_neural(266;0.112)		Epithelial(262;0.000601)		ACCTGGCACTCAGACCTGGGC	0.632													44	196					0	0	0.009718	0	0
BCAM	4059	broad.mit.edu	37	19	45315788	45315788	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:45315788G>A	uc002ozu.2	+	4	531	c.487G>A	c.(487-489)GAG>AAG	p.E163K	BCAM_uc002ozt.1_Missense_Mutation_p.E163K	NM_005581	NP_005572	P50895	BCAM_HUMAN	basal cell adhesion molecule isoform 1	163	Extracellular (Potential).|Ig-like V-type 2.				cell-matrix adhesion	integral to plasma membrane	laminin binding|laminin receptor activity			skin(1)	1	Lung NSC(12;0.000789)|all_lung(12;0.00218)	Ovarian(192;0.0728)|all_neural(266;0.112)				GTCTGTGATGGAGGACTCTGC	0.398													86	213					0	0	0.014410	0	0
CKM	1158	broad.mit.edu	37	19	45822867	45822867	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:45822867G>A	uc002pbd.2	-	2	179	c.105C>T	c.(103-105)ACC>ACT	p.T35T		NM_001824	NP_001815	P06732	KCRM_HUMAN	muscle creatine kinase	35	Phosphagen kinase N-terminal.				creatine metabolic process	cytosol	ATP binding|creatine kinase activity			skin(1)	1		Ovarian(192;0.0336)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;2.29e-44)|Epithelial(262;1.05e-38)|GBM - Glioblastoma multiforme(486;3.56e-07)	Creatine(DB00148)	AGAGTTCAAGGGTCAGTACCT	0.522													37	71					0	0	0.005524	0	0
VASP	7408	broad.mit.edu	37	19	46021280	46021280	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:46021280C>T	uc002pcg.2	+	3	613	c.271C>T	c.(271-273)CTC>TTC	p.L91F	VASP_uc010eki.2_Intron|VASP_uc002pci.2_Missense_Mutation_p.L78F	NM_003370	NP_003361	P50552	VASP_HUMAN	vasodilator-stimulated phosphoprotein	91	WH1.				axon guidance|cell junction assembly|T cell receptor signaling pathway	actin cytoskeleton|cytosol|filopodium membrane|focal adhesion|lamellipodium membrane	actin binding|profilin binding|SH3 domain binding				0		Ovarian(192;0.051)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.0145)|GBM - Glioblastoma multiforme(486;0.154)		GGTCTGGGGCCTCAACTTCGG	0.627													15	47					0	0	0.006122	0	0
DMPK	1760	broad.mit.edu	37	19	46280937	46280937	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:46280937G>A	uc002pdd.1	-	6	1444	c.900C>T	c.(898-900)ATC>ATT	p.I300I	DMPK_uc010xxs.1_Silent_p.I201I|DMPK_uc002pde.1_Silent_p.I300I|DMPK_uc002pdf.1_Silent_p.I290I|DMPK_uc002pdg.1_Silent_p.I290I|DMPK_uc002pdh.1_Silent_p.I290I|DMPK_uc002pdi.1_Silent_p.I316I|DMPK_uc010xxt.1_Silent_p.I290I	NM_001081563	NP_001075032	Q09013	DMPK_HUMAN	myotonic dystrophy protein kinase isoform 1	300	Protein kinase.				regulation of heart contraction		ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)	3		Ovarian(192;0.0308)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.00616)|GBM - Glioblastoma multiforme(486;0.0825)|Epithelial(262;0.24)		TGTAGTGGACGATCTTGCCAT	0.617													52	105					0	0	0.014410	0	0
DMWD	1762	broad.mit.edu	37	19	46288921	46288921	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:46288921G>A	uc002pdj.1	-	3	1879	c.1833C>T	c.(1831-1833)TTC>TTT	p.F611F	DMWD_uc002pdk.1_Silent_p.F611F|DMWD_uc010eko.1_Silent_p.F296F	NM_004943	NP_004934	Q09019	DMWD_HUMAN	dystrophia myotonica-containing WD repeat motif	611	WD 5.				meiosis						0		Ovarian(192;0.0308)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.00604)|GBM - Glioblastoma multiforme(486;0.0807)|Epithelial(262;0.236)		AGTCCTCCAGGAACAGGAGGA	0.687													11	14					0	0	0.001855	0	0
DMWD	1762	broad.mit.edu	37	19	46289988	46289988	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:46289988G>A	uc002pdj.1	-	3	812	c.766C>T	c.(766-768)CTG>TTG	p.L256L	DMWD_uc002pdk.1_Silent_p.L256L|DMWD_uc010eko.1_5'UTR	NM_004943	NP_004934	Q09019	DMWD_HUMAN	dystrophia myotonica-containing WD repeat motif	256					meiosis						0		Ovarian(192;0.0308)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.00604)|GBM - Glioblastoma multiforme(486;0.0807)|Epithelial(262;0.236)		TGCTTCAGCAGGCTGTACTGG	0.667													23	51					0	0	0.003330	0	0
ZC3H4	23211	broad.mit.edu	37	19	47569955	47569955	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:47569955G>A	uc002pga.3	-	15	3608	c.3570C>T	c.(3568-3570)TTC>TTT	p.F1190F	ZC3H4_uc002pgb.1_RNA	NM_015168	NP_055983	Q9UPT8	ZC3H4_HUMAN	zinc finger CCCH-type containing 4	1190							nucleic acid binding|zinc ion binding			skin(4)|ovary(2)	6		all_cancers(25;3.3e-08)|all_epithelial(76;2.28e-06)|all_lung(116;7.86e-06)|Lung NSC(112;2.31e-05)|all_neural(266;0.026)|Ovarian(192;0.0392)|Breast(70;0.0889)		OV - Ovarian serous cystadenocarcinoma(262;5.76e-05)|all cancers(93;7.69e-05)|Epithelial(262;0.00354)|GBM - Glioblastoma multiforme(486;0.0372)		ACTTGCGGACGAACGGGGGCT	0.667													6	10					0	0	0.001168	0	0
SLC8A2	6543	broad.mit.edu	37	19	47969130	47969130	+	Silent	SNP	G	A	A	rs118059830	by1000genomes	TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:47969130G>A	uc002pgx.2	-	2	809	c.531C>T	c.(529-531)ATC>ATT	p.I177I	SLC8A2_uc010xyq.1_Intron|SLC8A2_uc010xyr.1_Intron|SLC8A2_uc010ele.2_Silent_p.I177I	NM_015063	NP_055878	Q9UPR5	NAC2_HUMAN	solute carrier family 8 member 2 precursor	177	Helical; (Potential).				cell communication|platelet activation	integral to membrane|plasma membrane	calcium:sodium antiporter activity|calmodulin binding			skin(3)|ovary(1)	4		all_cancers(25;3.05e-07)|all_lung(116;4.19e-06)|Lung NSC(112;7.16e-06)|all_epithelial(76;7.65e-06)|all_neural(266;0.0652)|Ovarian(192;0.086)|Breast(70;0.173)		OV - Ovarian serous cystadenocarcinoma(262;0.000501)|all cancers(93;0.00058)|Epithelial(262;0.0181)|GBM - Glioblastoma multiforme(486;0.0457)		TGCACACGGCGATGACCACAA	0.582													8	22					0	0	0.003080	0	0
GLTSCR1	29998	broad.mit.edu	37	19	48183358	48183358	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:48183358G>A	uc002phh.3	+	6	1125	c.931G>A	c.(931-933)GGG>AGG	p.G311R	GLTSCR1_uc002phi.3_Missense_Mutation_p.G69R	NM_015711	NP_056526	Q9NZM4	GSCR1_HUMAN	glioma tumor suppressor candidate region gene 1	311							protein binding			pancreas(3)	3		all_cancers(25;1.8e-07)|all_lung(116;5.73e-06)|Lung NSC(112;9.69e-06)|all_epithelial(76;2.42e-05)|all_neural(266;0.0332)|Ovarian(192;0.086)		all cancers(93;0.000358)|OV - Ovarian serous cystadenocarcinoma(262;0.000576)|Epithelial(262;0.0212)|GBM - Glioblastoma multiforme(486;0.0355)		CGGAGGCGCGGGGGCCGCCTC	0.726													3	5					0	0	0.009096	0	0
SULT2A1	6822	broad.mit.edu	37	19	48382323	48382323	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:48382323G>A	uc002phr.2	-	4	677	c.537C>T	c.(535-537)TTC>TTT	p.F179F		NM_003167	NP_003158	Q06520	ST2A1_HUMAN	bile-salt sulfotransferase 2A1	179					3'-phosphoadenosine 5'-phosphosulfate metabolic process|bile acid catabolic process|cellular lipid metabolic process|digestion|sulfation|xenobiotic metabolic process	cytosol	bile-salt sulfotransferase activity			ovary(1)|pancreas(1)	2		all_cancers(25;3.02e-09)|all_lung(116;6.48e-07)|all_epithelial(76;7.35e-07)|Lung NSC(112;1.56e-06)|all_neural(266;0.0146)|Ovarian(192;0.0261)|Breast(70;0.203)		OV - Ovarian serous cystadenocarcinoma(262;0.000254)|all cancers(93;0.000545)|Epithelial(262;0.0217)|GBM - Glioblastoma multiforme(486;0.0552)		TCAGTAACAGGAAGTTTTTCT	0.448													55	114					0	0	0.014410	0	0
ELSPBP1	64100	broad.mit.edu	37	19	48511930	48511930	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:48511930C>T	uc002pht.2	+	2	161	c.6C>T	c.(4-6)ACC>ACT	p.T2T		NM_022142	NP_071425	Q96BH3	ESPB1_HUMAN	epididymal sperm binding protein 1 precursor	2				T -> N (in Ref. 1; CAC14267).	single fertilization	extracellular region					0		all_cancers(25;8.7e-09)|all_lung(116;1.15e-06)|all_epithelial(76;1.17e-06)|Lung NSC(112;2.56e-06)|all_neural(266;0.0138)|Ovarian(192;0.0261)|Breast(70;0.203)		OV - Ovarian serous cystadenocarcinoma(262;0.000253)|all cancers(93;0.00129)|Epithelial(262;0.0314)|GBM - Glioblastoma multiforme(486;0.0606)		CCAAGATGACCCGATGGTCCA	0.468													7	17					0	0	0.001984	0	0
ELSPBP1	64100	broad.mit.edu	37	19	48523091	48523091	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:48523091G>A	uc002pht.2	+	5	626	c.471G>A	c.(469-471)GAG>GAA	p.E157E		NM_022142	NP_071425	Q96BH3	ESPB1_HUMAN	epididymal sperm binding protein 1 precursor	157	Fibronectin type-II 3.				single fertilization	extracellular region					0		all_cancers(25;8.7e-09)|all_lung(116;1.15e-06)|all_epithelial(76;1.17e-06)|Lung NSC(112;2.56e-06)|all_neural(266;0.0138)|Ovarian(192;0.0261)|Breast(70;0.203)		OV - Ovarian serous cystadenocarcinoma(262;0.000253)|all cancers(93;0.00129)|Epithelial(262;0.0314)|GBM - Glioblastoma multiforme(486;0.0606)		CAACCACAGAGAACATGGATA	0.483													15	30					0	0	0.006122	0	0
LIG1	3978	broad.mit.edu	37	19	48653380	48653380	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:48653380G>A	uc002pia.1	-	8	782	c.662C>T	c.(661-663)CCC>CTC	p.P221L	LIG1_uc010xze.1_5'UTR|LIG1_uc002phz.1_RNA|LIG1_uc002pib.1_RNA|LIG1_uc010xzf.1_Missense_Mutation_p.P153L|LIG1_uc010xzg.1_Missense_Mutation_p.P190L|LIG1_uc010xzh.1_RNA	NM_000234	NP_000225	P18858	DNLI1_HUMAN	DNA ligase I	221					anatomical structure morphogenesis|base-excision repair|cell division|DNA ligation involved in DNA repair|DNA strand elongation involved in DNA replication|double-strand break repair via homologous recombination|nucleotide-excision repair, DNA gap filling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	nucleoplasm	ATP binding|DNA binding|DNA ligase (ATP) activity|metal ion binding			large_intestine(2)|lung(1)	3		all_epithelial(76;3.1e-06)|all_lung(116;4.39e-06)|Lung NSC(112;8.96e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)|Breast(70;0.203)		OV - Ovarian serous cystadenocarcinoma(262;8.45e-05)|all cancers(93;0.000423)|Epithelial(262;0.0177)|GBM - Glioblastoma multiforme(486;0.0329)	Bleomycin(DB00290)	AGCTCTGCGGGGAGGCTTGGT	0.612								NER					12	45					0	0	0.010729	0	0
SYNGR4	23546	broad.mit.edu	37	19	48878949	48878949	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:48878949C>T	uc002piz.2	+	4	656	c.411C>T	c.(409-411)CTC>CTT	p.L137L		NM_012451	NP_036583	O95473	SNG4_HUMAN	synaptogyrin 4	137	MARVEL.					integral to membrane					0		all_epithelial(76;5.08e-07)|all_lung(116;5.76e-06)|Lung NSC(112;1.18e-05)|Prostate(7;0.0143)|all_neural(266;0.0189)|Ovarian(192;0.0261)|Breast(70;0.203)		OV - Ovarian serous cystadenocarcinoma(262;0.000138)|all cancers(93;0.00017)|Epithelial(262;0.0138)|GBM - Glioblastoma multiforme(486;0.0146)		AAGAGTTCCTCCTGGGGAGCA	0.602													25	55					0	0	0.007291	0	0
LMTK3	114783	broad.mit.edu	37	19	49001288	49001288	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:49001288C>T	uc002pjk.2	-	12	3125	c.3125G>A	c.(3124-3126)AGG>AAG	p.R1042K		NM_001080434	NP_001073903			lemur tyrosine kinase 3											lung(5)|central_nervous_system(1)	6		all_lung(116;0.000147)|Lung NSC(112;0.000251)|all_epithelial(76;0.000326)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000114)|all cancers(93;0.000141)|Epithelial(262;0.00854)|GBM - Glioblastoma multiforme(486;0.0231)		CTCCGTGTTCCTGGGGAATCT	0.662													24	52					0	0	0.014323	0	0
TULP2	7288	broad.mit.edu	37	19	49398325	49398326	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:49398325_49398326GG>AA	uc002pkz.2	-	6	594_595	c.443_444CC>TT	c.(442-444)TCC>TTT	p.S148F		NM_003323	NP_003314	O00295	TULP2_HUMAN	tubby like protein 2	148					visual perception	cytoplasm|extracellular region				ovary(1)|kidney(1)|skin(1)	3		all_epithelial(76;5.29e-07)|all_lung(116;1.7e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000259)|all cancers(93;0.000435)|Epithelial(262;0.0221)|GBM - Glioblastoma multiforme(486;0.0234)		GGGGAGAGACGGAACCATTCTC	0.53													20	32					0	0	0.004672	0	0
GYS1	2997	broad.mit.edu	37	19	49489290	49489290	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:49489290G>A	uc002plp.2	-	4	736	c.495C>T	c.(493-495)TTC>TTT	p.F165F	GYS1_uc010xzy.1_Intron|GYS1_uc010emm.2_Silent_p.F101F|GYS1_uc010xzz.1_Silent_p.F85F|GYS1_uc010yaa.1_RNA	NM_002103	NP_002094	P13807	GYS1_HUMAN	glycogen synthase 1 (muscle) isoform 1	165					glucose metabolic process|glycogen biosynthetic process	cytosol	glycogen (starch) synthase activity|protein binding			ovary(2)	2		all_lung(116;4.89e-05)|Lung NSC(112;8.3e-05)|all_epithelial(76;8.64e-05)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000164)|all cancers(93;0.000226)|GBM - Glioblastoma multiforme(486;0.00561)|Epithelial(262;0.0286)		TCTGTGCCAGGAACTGTGGGC	0.582													4	28					0	0	0.001168	0	0
CGB7	94027	broad.mit.edu	37	19	49557627	49557627	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:49557627G>A	uc002pmd.2	-	3	784	c.419C>T	c.(418-420)TCC>TTC	p.S140F	CGB_uc010yad.1_Intron|CGB8_uc002pmc.2_Intron|CGB7_uc002pme.2_Missense_Mutation_p.S140F	NM_033142	NP_149133	P01233	CGHB_HUMAN	chorionic gonadotropin, beta polypeptide 7	140					apoptosis|cell-cell signaling|cellular nitrogen compound metabolic process|female gamete generation|hormone biosynthetic process|peptide hormone processing|signal transduction	extracellular region|soluble fraction	hormone activity				0		all_epithelial(76;9.62e-07)|all_lung(116;1.7e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		all cancers(93;0.000371)|OV - Ovarian serous cystadenocarcinoma(262;0.000503)|GBM - Glioblastoma multiforme(486;0.00518)|Epithelial(262;0.0427)	Choriogonadotropin alfa(DB00097)	GGCCTTTGAGGAAGAGGAGGC	0.632													19	80					0	0	0.003954	0	0
KCNA7	3743	broad.mit.edu	37	19	49573376	49573376	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:49573376C>T	uc002pmg.2	-	2	1671	c.1315G>A	c.(1315-1317)GAG>AAG	p.E439K		NM_031886	NP_114092	Q96RP8	KCNA7_HUMAN	potassium voltage-gated channel, shaker-related	439						voltage-gated potassium channel complex	voltage-gated potassium channel activity			central_nervous_system(1)	1		all_lung(116;1.7e-06)|Lung NSC(112;3.55e-06)|all_epithelial(76;3.83e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		all cancers(93;0.000397)|OV - Ovarian serous cystadenocarcinoma(262;0.000519)|GBM - Glioblastoma multiforme(486;0.00541)|Epithelial(262;0.0441)		GGTGGTAGCTCAGGTACCTCC	0.597													24	28					0	0	0.003330	0	0
DKKL1	27120	broad.mit.edu	37	19	49878092	49878092	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:49878092C>T	uc002pnk.2	+	5	750	c.536C>T	c.(535-537)TCC>TTC	p.S179F		NM_014419	NP_055234	Q9UK85	DKKL1_HUMAN	dickkopf-like 1 precursor	179					anatomical structure morphogenesis	extracellular space	protein binding|signal transducer activity				0		all_lung(116;1.66e-06)|Lung NSC(112;5.89e-06)|all_neural(266;0.0189)|Ovarian(192;0.0392)		OV - Ovarian serous cystadenocarcinoma(262;0.00156)|GBM - Glioblastoma multiforme(486;0.0456)		CGGCGGAGGTCCCACCAGGAT	0.652													14	18					0	0	0.004007	0	0
SLC17A7	57030	broad.mit.edu	37	19	49933984	49933984	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:49933984C>T	uc002pnp.2	-	12	1647	c.1475G>A	c.(1474-1476)GGA>GAA	p.G492E	SLC17A7_uc002pno.2_Missense_Mutation_p.G154E	NM_020309	NP_064705	Q9P2U7	VGLU1_HUMAN	solute carrier family 17, member 7	492	Cytoplasmic (Potential).				glutamate secretion|neurotransmitter secretion	cell junction|clathrin sculpted glutamate transport vesicle membrane|integral to membrane|synaptic vesicle membrane|synaptosome	L-glutamate transmembrane transporter activity|sodium-dependent phosphate transmembrane transporter activity|sodium:inorganic phosphate symporter activity			ovary(1)|pancreas(1)|skin(1)	3		all_lung(116;1.62e-07)|Lung NSC(112;8.47e-07)|all_neural(266;0.0381)|Ovarian(192;0.0392)		OV - Ovarian serous cystadenocarcinoma(262;0.00153)|GBM - Glioblastoma multiforme(486;0.0245)		CTGCTTCTCTCCAGAAGCAAA	0.572													20	40					0	0	0.010504	0	0
SCAF1	58506	broad.mit.edu	37	19	50158109	50158109	+	Silent	SNP	C	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:50158109C>G	uc002poq.2	+	9	3724	c.3600C>G	c.(3598-3600)GGC>GGG	p.G1200G		NM_021228	NP_067051	Q9H7N4	SFR19_HUMAN	SR-related CTD-associated factor 1	1200	Necessary for interaction with the CTD domain of POLR2A.				mRNA processing|RNA splicing	nucleus	RNA binding				0		all_lung(116;1.05e-05)|Lung NSC(112;3.77e-05)|all_neural(266;0.196)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.00113)|GBM - Glioblastoma multiforme(134;0.0204)		GCTCTGAGGGCCGTGGGGACA	0.667													8	5					0	0	0.003080	0	0
CPT1C	126129	broad.mit.edu	37	19	50212046	50212046	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:50212046G>A	uc002ppj.2	+	13	1721	c.1516G>A	c.(1516-1518)GAC>AAC	p.D506N	CPT1C_uc002ppl.3_Missense_Mutation_p.D472N|CPT1C_uc002ppi.2_Missense_Mutation_p.D423N|CPT1C_uc002ppk.2_Missense_Mutation_p.D495N|CPT1C_uc010eng.2_Missense_Mutation_p.D506N|CPT1C_uc010enh.2_Missense_Mutation_p.D506N|CPT1C_uc010ybc.1_Missense_Mutation_p.D377N|CPT1C_uc010eni.1_Missense_Mutation_p.D163N	NM_152359	NP_689572	Q8TCG5	CPT1C_HUMAN	carnitine palmitoyltransferase 1C isoform 2	506	Cytoplasmic (Potential).				fatty acid metabolic process	integral to membrane|mitochondrial outer membrane	carnitine O-palmitoyltransferase activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3		all_lung(116;1.05e-05)|Lung NSC(112;3.77e-05)|all_neural(266;0.107)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.0011)|GBM - Glioblastoma multiforme(134;0.00786)		GGGGCACCCGGACCCCACACT	0.572													31	74					0	0	0.003271	0	0
NUP62	23636	broad.mit.edu	37	19	50412799	50412799	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:50412799G>A	uc002pqx.2	-	2	370	c.266C>T	c.(265-267)TCT>TTT	p.S89F	IL4I1_uc002pqv.1_Intron|IL4I1_uc010eno.1_Intron|IL4I1_uc002pqw.1_Intron|IL4I1_uc002pqu.1_Intron|NUP62_uc002pqy.2_Missense_Mutation_p.S89F|NUP62_uc002pqz.2_Missense_Mutation_p.S89F|NUP62_uc002pra.2_Missense_Mutation_p.S89F|NUP62_uc002prb.2_Missense_Mutation_p.S89F|NUP62_uc002prc.2_Missense_Mutation_p.S89F	NM_153719	NP_714941	P37198	NUP62_HUMAN	nucleoporin 62kDa	89	15 X 9 AA approximate repeats.|7.|Thr-rich.				carbohydrate metabolic process|cell death|cell surface receptor linked signaling pathway|glucose transport|hormone-mediated signaling pathway|mRNA transport|negative regulation of apoptosis|negative regulation of cell proliferation|nucleocytoplasmic transport|positive regulation of epidermal growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of transcription, DNA-dependent|protein transport|regulation of glucose transport|transcription, DNA-dependent|transmembrane transport|viral reproduction	cytoplasm|nuclear membrane|nuclear pore|nucleocytoplasmic shuttling complex|ribonucleoprotein complex|spindle pole	chromatin binding|protein serine/threonine kinase activity|receptor signaling complex scaffold activity|SH2 domain binding|structural constituent of nuclear pore|thyroid hormone receptor binding|ubiquitin binding				0		all_lung(116;1.47e-05)|all_neural(266;0.0459)|Ovarian(192;0.0481)		GBM - Glioblastoma multiforme(134;0.00242)|OV - Ovarian serous cystadenocarcinoma(262;0.0177)		GATCCCCAAAGAAAATCCAGT	0.582													48	90					0	0	0.014410	0	0
ZNF473	25888	broad.mit.edu	37	19	50548690	50548690	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:50548690C>T	uc002prn.2	+	5	1227	c.990C>T	c.(988-990)ACC>ACT	p.T330T	ZNF473_uc002prm.2_Silent_p.T330T|ZNF473_uc010ybo.1_Silent_p.T318T	NM_001006656	NP_001006657	Q8WTR7	ZN473_HUMAN	zinc finger protein 473	330	Interaction with SLBP/pre-mRNA complex.|C2H2-type 3.				histone mRNA 3'-end processing|regulation of transcription, DNA-dependent|termination of RNA polymerase II transcription	Cajal body	DNA binding|protein binding|zinc ion binding			ovary(1)|central_nervous_system(1)	2		all_neural(266;0.0459)|Ovarian(192;0.0728)		GBM - Glioblastoma multiforme(134;0.00111)|OV - Ovarian serous cystadenocarcinoma(262;0.0058)		AGGCTTTTACCCGGATCTTCC	0.507													11	75					0	0	0.010729	0	0
MYH14	79784	broad.mit.edu	37	19	50812329	50812329	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:50812329C>T	uc002prr.1	+	40	5779	c.5732C>T	c.(5731-5733)TCC>TTC	p.S1911F	MYH14_uc010enu.1_Missense_Mutation_p.S1952F|MYH14_uc002prq.1_Missense_Mutation_p.S1919F|MYH14_uc010ycb.1_Missense_Mutation_p.S262F|MYH14_uc002prs.1_Missense_Mutation_p.S262F	NM_024729	NP_079005	Q7Z406	MYH14_HUMAN	myosin, heavy chain 14 isoform 2	1911	Potential.				axon guidance|regulation of cell shape	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			central_nervous_system(1)	1		all_neural(266;0.0571)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.00389)|GBM - Glioblastoma multiforme(134;0.0195)		GAGGAGGCATCCCGGGCTCAG	0.622													13	26					0	0	0.001855	0	0
KCNC3	3748	broad.mit.edu	37	19	50826917	50826917	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:50826917G>A	uc002pru.1	-	2	1588	c.1293C>T	c.(1291-1293)TTC>TTT	p.F431F	KCNC3_uc002prt.1_Silent_p.F67F	NM_004977	NP_004968	Q14003	KCNC3_HUMAN	Shaw-related voltage-gated potassium channel	431	Helical; Voltage-sensor; Name=Segment S4; (Potential).				cell death	voltage-gated potassium channel complex	voltage-gated potassium channel activity			pancreas(1)	1		all_neural(266;0.057)|Ovarian(192;0.208)		OV - Ovarian serous cystadenocarcinoma(262;0.00283)|GBM - Glioblastoma multiforme(134;0.0181)		GCAGCCCCACGAAGTGCCGGG	0.657													10	19					0	0	0.010729	0	0
MYBPC2	4606	broad.mit.edu	37	19	50954567	50954567	+	Splice_Site	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:50954567G>A	uc002psf.2	+	15	1660	c.1609_splice	c.e15+1	p.E537_splice		NM_004533	NP_004524	Q14324	MYPC2_HUMAN	myosin binding protein C, fast type						cell adhesion|muscle filament sliding	cytosol|myosin filament	actin binding|structural constituent of muscle			breast(1)	1		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.0079)|GBM - Glioblastoma multiforme(134;0.0144)		CCCAAGCAAGGTGAGCACCAC	0.378													20	38					0	0	0.002780	0	0
MYBPC2	4606	broad.mit.edu	37	19	50957356	50957356	+	Missense_Mutation	SNP	G	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:50957356G>T	uc002psf.2	+	17	1880	c.1829G>T	c.(1828-1830)CGG>CTG	p.R610L		NM_004533	NP_004524	Q14324	MYPC2_HUMAN	myosin binding protein C, fast type	610	Ig-like C2-type 5.				cell adhesion|muscle filament sliding	cytosol|myosin filament	actin binding|structural constituent of muscle			breast(1)	1		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.0079)|GBM - Glioblastoma multiforme(134;0.0144)		AGTGCGCAGCGGGAAGACGAG	0.607													6	7					5.9392e-07	6.36937e-07	0.001168	1	0
SYT3	84258	broad.mit.edu	37	19	51133146	51133146	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:51133146C>T	uc002pst.2	-	3	1591	c.957G>A	c.(955-957)AGG>AGA	p.R319R	SYT3_uc002psv.2_Silent_p.R319R|SYT3_uc010ycd.1_Silent_p.R319R	NM_032298	NP_115674	Q9BQG1	SYT3_HUMAN	synaptotagmin III	319	C2 1.|Cytoplasmic (Potential).					cell junction|endosome|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(2)|breast(1)	3		all_neural(266;0.131)		OV - Ovarian serous cystadenocarcinoma(262;0.00462)|GBM - Glioblastoma multiforme(134;0.0188)		CCTGCAGGATCCTCACCACCA	0.622													22	127					0	0	0.002780	0	0
SYT3	84258	broad.mit.edu	37	19	51133407	51133407	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:51133407G>A	uc002pst.2	-	3	1330	c.696C>T	c.(694-696)CCC>CCT	p.P232P	SYT3_uc002psv.2_Silent_p.P232P|SYT3_uc010ycd.1_Silent_p.P232P	NM_032298	NP_115674	Q9BQG1	SYT3_HUMAN	synaptotagmin III	232	Cytoplasmic (Potential).					cell junction|endosome|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(2)|breast(1)	3		all_neural(266;0.131)		OV - Ovarian serous cystadenocarcinoma(262;0.00462)|GBM - Glioblastoma multiforme(134;0.0188)		GCTGGGTGAGGGGTCGGGGCA	0.647													10	14					0	0	0.008291	0	0
KLK3	354	broad.mit.edu	37	19	51359505	51359505	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:51359505C>T	uc002pts.1	+	2	97	c.56C>T	c.(55-57)CCC>CTC	p.P19L	KLK3_uc002ptp.1_Missense_Mutation_p.P19L|KLK3_uc010ycj.1_Missense_Mutation_p.P19L|KLK3_uc002ptr.1_Missense_Mutation_p.P19L|KLK3_uc010eof.1_RNA	NM_001030047	NP_001025218	P07288	KLK3_HUMAN	prostate specific antigen isoform 3	19					negative regulation of angiogenesis|proteolysis	extracellular region	serine-type endopeptidase activity			upper_aerodigestive_tract(1)|ovary(1)|kidney(1)	3		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00763)|GBM - Glioblastoma multiforme(134;0.0144)		GGTGCTGCACCCCTCATCCTG	0.597													13	96					0	0	0.001855	0	0
KLK4	9622	broad.mit.edu	37	19	51411882	51411882	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:51411882G>A	uc002pua.1	-	3	428	c.428C>T	c.(427-429)ACC>ATC	p.T143I	KLK4_uc002pty.1_Missense_Mutation_p.T94I|KLK4_uc002ptz.1_RNA|KLK4_uc002pub.1_Missense_Mutation_p.T48I|KLK4_uc002puc.1_RNA|KLK4_uc010eoi.1_Missense_Mutation_p.T48I|KLK4_uc002pud.1_Missense_Mutation_p.T48I	NM_004917	NP_004908	Q9Y5K2	KLK4_HUMAN	kallikrein-related peptidase 4 preproprotein	143	Peptidase S1.				proteolysis	extracellular region	metal ion binding|serine-type endopeptidase activity				0		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.00624)|GBM - Glioblastoma multiforme(134;0.00878)		GTTCCCCGCGGTAGGGCACTG	0.597													11	36					0	0	0.010729	0	0
KLK5	25818	broad.mit.edu	37	19	51452009	51452009	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:51452009G>A	uc002pue.2	-	6	831	c.613C>T	c.(613-615)CAG>TAG	p.Q205*	KLK5_uc002puf.2_Nonsense_Mutation_p.Q205*|KLK5_uc002pug.2_Nonsense_Mutation_p.Q205*	NM_001077491	NP_001070959	Q9Y337	KLK5_HUMAN	kallikrein-related peptidase 5 preproprotein	205	Peptidase S1.				epidermis development|positive regulation of G-protein coupled receptor protein signaling pathway|proteolysis	extracellular space	protein binding|serine-type endopeptidase activity				0		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.00379)|GBM - Glioblastoma multiforme(134;0.00888)		TTCAAGCACTGGAGGACCTTA	0.502													8	59					0	0	0.003080	0	0
SIGLEC9	27180	broad.mit.edu	37	19	51630295	51630295	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:51630295G>A	uc002pvu.2	+	4	824	c.757G>A	c.(757-759)GTC>ATC	p.V253I	SIGLEC9_uc010yct.1_Missense_Mutation_p.V253I	NM_014441	NP_055256	Q9Y336	SIGL9_HUMAN	sialic acid binding Ig-like lectin 9 precursor	253	Extracellular (Potential).|Ig-like C2-type 2.				cell adhesion|cell surface receptor linked signaling pathway	integral to plasma membrane	sugar binding			skin(1)	1		all_neural(266;0.0529)		GBM - Glioblastoma multiforme(134;0.000826)|OV - Ovarian serous cystadenocarcinoma(262;0.00295)		AGTATCCACAGTCTTGGGAAA	0.318													29	59					0	0	0.012213	0	0
SIGLEC9	27180	broad.mit.edu	37	19	51630528	51630528	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:51630528G>A	uc002pvu.2	+	4	1057	c.990G>A	c.(988-990)CAG>CAA	p.Q330Q	SIGLEC9_uc010yct.1_Silent_p.Q330Q	NM_014441	NP_055256	Q9Y336	SIGL9_HUMAN	sialic acid binding Ig-like lectin 9 precursor	330	Extracellular (Potential).|Ig-like C2-type 2.				cell adhesion|cell surface receptor linked signaling pathway	integral to plasma membrane	sugar binding			skin(1)	1		all_neural(266;0.0529)		GBM - Glioblastoma multiforme(134;0.000826)|OV - Ovarian serous cystadenocarcinoma(262;0.00295)		GCTCTCAGCAGGTCTACCTGA	0.602													5	27					0	0	0.000602	0	0
SIGLEC7	27036	broad.mit.edu	37	19	51647846	51647846	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:51647846C>T	uc002pvv.1	+	2	686	c.617C>T	c.(616-618)CCA>CTA	p.P206L	SIGLEC7_uc002pvw.1_Intron|SIGLEC7_uc010eoq.1_Intron|SIGLEC7_uc010eor.1_Intron	NM_014385	NP_055200	Q9Y286	SIGL7_HUMAN	sialic acid binding Ig-like lectin 7 isoform 1	206	Ig-like C2-type 1.|Extracellular (Potential).				cell adhesion	integral to plasma membrane	receptor activity|sugar binding			large_intestine(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000836)|OV - Ovarian serous cystadenocarcinoma(262;0.00297)		ACCCTCATCCCACAGCCCCAG	0.652													22	42					0	0	0.010504	0	0
C19orf75	284369	broad.mit.edu	37	19	51768691	51768691	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:51768691G>A	uc002pwb.1	+	3	473	c.92G>A	c.(91-93)GGG>GAG	p.G31E	C19orf75_uc010eov.1_Intron|C19orf75_uc010ycw.1_Intron	NM_173635	NP_775906	Q8N7X8	CS075_HUMAN	hypothetical protein LOC284369	31						integral to membrane				ovary(1)|pancreas(1)	2						TCCTTCCATGGGATTCCCACA	0.587													28	39					0	0	0.008361	0	0
SIGLEC8	27181	broad.mit.edu	37	19	51960453	51960453	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:51960453G>A	uc002pwt.2	-	3	833	c.766C>T	c.(766-768)CAA>TAA	p.Q256*	SIGLEC8_uc010yda.1_Intron|SIGLEC8_uc002pwu.2_RNA|SIGLEC8_uc010eox.2_Nonsense_Mutation_p.Q163*	NM_014442	NP_055257	Q9NYZ4	SIGL8_HUMAN	sialic acid binding Ig-like lectin 8 precursor	256	Extracellular (Potential).|Ig-like C2-type 2.				cell adhesion	integral to membrane	sugar binding|transmembrane receptor activity			ovary(2)|kidney(1)|central_nervous_system(1)|skin(1)	5		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000627)|OV - Ovarian serous cystadenocarcinoma(262;0.00979)		GCATCTCCTTGGAAGACAGTC	0.572													18	87					0	0	0.008871	0	0
CEACAM18	729767	broad.mit.edu	37	19	51986462	51986462	+	Nonsense_Mutation	SNP	G	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:51986462G>T	uc002pwv.1	+	5	1048	c.1048G>T	c.(1048-1050)GAG>TAG	p.E350*		NM_001080405	NP_001073874	A8MTB9	CEA18_HUMAN	carcinoembryonic antigen-related cell adhesion	350	Ig-like C2-type.					integral to membrane				skin(1)	1		all_neural(266;0.0529)		GBM - Glioblastoma multiforme(134;0.00148)|OV - Ovarian serous cystadenocarcinoma(262;0.00979)		TCTTGCCTGGGAGCAGATGGG	0.542													35	59					4.3181e-19	4.66745e-19	0.013726	1	0
SIGLEC12	89858	broad.mit.edu	37	19	52003378	52003378	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:52003378G>A	uc002pwx.1	-	2	660	c.604C>T	c.(604-606)CCA>TCA	p.P202S	SIGLEC12_uc002pww.1_Missense_Mutation_p.P84S|SIGLEC12_uc010eoy.1_Intron	NM_053003	NP_443729	Q96PQ1	SIG12_HUMAN	sialic acid binding immunoglobulin-like	202	Ig-like V-type 2.|Extracellular (Potential).				cell adhesion	integral to membrane	sugar binding			ovary(3)|skin(2)	5		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.00161)|OV - Ovarian serous cystadenocarcinoma(262;0.0102)		GTGGCCACTGGAATATCCCAT	0.537													40	71					0	0	0.006230	0	0
SIGLEC5	8778	broad.mit.edu	37	19	52115667	52115667	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:52115667C>T	uc002pxe.2	-	9	1612	c.1473G>A	c.(1471-1473)AGG>AGA	p.R491R		NM_003830	NP_003821	O15389	SIGL5_HUMAN	sialic acid binding Ig-like lectin 5 precursor	491	Cytoplasmic (Potential).				cell adhesion	integral to membrane	sugar binding			skin(2)|breast(1)|central_nervous_system(1)	4		all_neural(266;0.0726)		GBM - Glioblastoma multiforme(134;0.00124)|OV - Ovarian serous cystadenocarcinoma(262;0.0218)		AGGGCTTCTTCCTGGAACCCT	0.433													24	46					0	0	0.014323	0	0
SIGLEC14	100049587	broad.mit.edu	37	19	52147157	52147157	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:52147157G>A	uc002pxf.3	-	5	1007	c.887C>T	c.(886-888)TCC>TTC	p.S296F		NM_001098612	NP_001092082	Q08ET2	SIG14_HUMAN	sialic acid binding Ig-like lectin 14 precursor	296	Extracellular (Potential).|Ig-like C2-type 2.				cell adhesion	integral to membrane|plasma membrane	protein binding|sugar binding			ovary(1)	1		all_neural(266;0.0299)		GBM - Glioblastoma multiforme(134;0.000965)|OV - Ovarian serous cystadenocarcinoma(262;0.0195)		TGAGGTCTGGGAAGGATTGAG	0.617													5	61					0	0	0.001168	0	0
ZNF616	90317	broad.mit.edu	37	19	52619558	52619558	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:52619558G>A	uc002pym.2	-	4	1142	c.859C>T	c.(859-861)CAT>TAT	p.H287Y	ZNF616_uc002pyn.2_RNA	NM_178523	NP_848618	Q08AN1	ZN616_HUMAN	zinc finger protein 616	287	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.00392)|OV - Ovarian serous cystadenocarcinoma(262;0.0189)		ATTCTCTGATGAACTGCAAGG	0.393													20	38					0	0	0.012319	0	0
ZNF836	162962	broad.mit.edu	37	19	52660524	52660524	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:52660524C>T	uc010ydi.1	-	5	786	c.412G>A	c.(412-414)GAA>AAA	p.E138K	ZNF836_uc010ydj.1_Missense_Mutation_p.E138K	NM_001102657	NP_001096127	Q6ZNA1	ZN836_HUMAN	zinc finger protein 836	138					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AGCTGATTTTCAATACATTTG	0.328													7	18					0	0	0.001984	0	0
ZNF480	147657	broad.mit.edu	37	19	52803732	52803732	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:52803732C>T	uc010ydl.1	+	2	137	c.67C>T	c.(67-69)CCT>TCT	p.P23S	ZNF480_uc002pyv.2_5'UTR|ZNF480_uc010ydm.1_Missense_Mutation_p.P23S|ZNF480_uc010epn.2_5'UTR	NM_144684	NP_653285	Q8WV37	ZN480_HUMAN	zinc finger protein 480	23					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			large_intestine(1)	1				GBM - Glioblastoma multiforme(134;0.00212)|OV - Ovarian serous cystadenocarcinoma(262;0.00369)		GATGGCTCTTCCTCAGGTGAG	0.453													28	60					0	0	0.007291	0	0
ZNF528	84436	broad.mit.edu	37	19	52919319	52919319	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:52919319G>A	uc002pzh.2	+	7	1640	c.1214G>A	c.(1213-1215)AGA>AAA	p.R405K	ZNF528_uc002pzi.2_Missense_Mutation_p.R172K	NM_032423	NP_115799	Q3MIS6	ZN528_HUMAN	zinc finger protein 528	405					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(134;0.00249)|OV - Ovarian serous cystadenocarcinoma(262;0.00817)		ATTCATACTAGAGAGAGACCT	0.403													19	34					0	0	0.010504	0	0
ZNF701	55762	broad.mit.edu	37	19	53085707	53085707	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:53085707G>A	uc002pzs.1	+	4	522	c.395G>A	c.(394-396)GGA>GAA	p.G132E	ZNF701_uc010ydn.1_Missense_Mutation_p.G198E	NM_018260	NP_060730	Q9NV72	ZN701_HUMAN	zinc finger protein 701	132					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				OV - Ovarian serous cystadenocarcinoma(262;0.0105)|GBM - Glioblastoma multiforme(134;0.0402)		AGGCATGCTGGAAACAAACCT	0.398													32	64					0	0	0.003755	0	0
ZNF600	162966	broad.mit.edu	37	19	53269225	53269225	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:53269225G>A	uc002qab.3	-	3	2070	c.1784C>T	c.(1783-1785)TCA>TTA	p.S595L		NM_198457	NP_940859	Q6ZNG1	ZN600_HUMAN	zinc finger protein 600	595	C2H2-type 16.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				OV - Ovarian serous cystadenocarcinoma(262;0.0241)|GBM - Glioblastoma multiforme(134;0.0404)		TGCCAGGTATGAATTACGCAC	0.408													51	100					0	0	0.014410	0	0
ZNF600	162966	broad.mit.edu	37	19	53269440	53269440	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:53269440C>T	uc002qab.3	-	3	1855	c.1569G>A	c.(1567-1569)GAG>GAA	p.E523E		NM_198457	NP_940859	Q6ZNG1	ZN600_HUMAN	zinc finger protein 600	523					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				OV - Ovarian serous cystadenocarcinoma(262;0.0241)|GBM - Glioblastoma multiforme(134;0.0404)		TGTAAGGTTTCTCACCACTAT	0.443													12	112					0	0	0.001855	0	0
ZNF28	7576	broad.mit.edu	37	19	53304598	53304598	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:53304598G>A	uc002qad.2	-	4	620	c.500C>T	c.(499-501)TCT>TTT	p.S167F	ZNF28_uc002qac.2_Missense_Mutation_p.S114F|ZNF28_uc010eqe.2_Missense_Mutation_p.S113F	NM_006969	NP_008900	P17035	ZNF28_HUMAN	zinc finger protein 28	167					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1				GBM - Glioblastoma multiforme(134;0.0386)|Lung(386;0.145)		ATTGTTGATAGACTTCTCAAC	0.368													25	117					0	0	0.005443	0	0
ZNF845	91664	broad.mit.edu	37	19	53854385	53854385	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:53854385A>G	uc010ydv.1	+	4	574	c.457A>G	c.(457-459)ATG>GTG	p.M153V	ZNF845_uc010ydw.1_Missense_Mutation_p.M153V	NM_138374	NP_612383	Q96IR2	ZN845_HUMAN	zinc finger protein 845	153					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TGAACTCCACATGTTTCAGAC	0.423													5	129					0	0	0.000602	0	0
DPRX	503834	broad.mit.edu	37	19	54140241	54140241	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:54140241G>A	uc002qcf.1	+	3	626	c.575G>A	c.(574-576)TGA>TAA	p.*192*		NM_001012728	NP_001012746	A6NFQ7	DPRX_HUMAN	divergent-paired related homeobox	192						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.013)		CGAGAGAGATGATAAATACAA	0.284													32	61					0	0	0.013726	0	0
MIR519B	574469	broad.mit.edu	37	19	54198488	54198488	+	RNA	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:54198488G>A	hsa-mir-519b|MI0003151	+			c.22G>A			MIR525_hsa-mir-525|MI0003152_5'Flank																	0						CCTCTAGAGGGAAGCGCTTTC	0.403													25	67					0	0	0.009535	0	0
NLRP12	91662	broad.mit.edu	37	19	54307219	54307219	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:54307219G>A	uc002qch.3	-	6	2792	c.2572C>T	c.(2572-2574)CTA>TTA	p.L858L	NLRP12_uc010eqw.2_Silent_p.L141L|NLRP12_uc002qci.3_Silent_p.L858L|NLRP12_uc002qcj.3_Silent_p.L859L|NLRP12_uc002qck.3_RNA|NLRP12_uc010eqx.2_Silent_p.L859L	NM_144687	NP_653288	P59046	NAL12_HUMAN	NLR family, pyrin domain containing 12 isoform	858	LRR 2.				negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of interleukin-1 secretion|negative regulation of interleukin-6 biosynthetic process|negative regulation of protein autophosphorylation|negative regulation of Toll signaling pathway|positive regulation of inflammatory response|positive regulation of interleukin-1 beta secretion|regulation of interleukin-18 biosynthetic process|release of cytoplasmic sequestered NF-kappaB	cytoplasm	ATP binding|caspase activator activity|protein binding			ovary(4)|upper_aerodigestive_tract(2)|lung(1)	7	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.026)		AAAGTCCGTAGTCTGCAGACT	0.443													8	44					0	0	0.004482	0	0
NLRP12	91662	broad.mit.edu	37	19	54312891	54312891	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:54312891C>T	uc002qch.3	-	3	2242	c.2022G>A	c.(2020-2022)GGG>GGA	p.G674G	NLRP12_uc010eqw.2_5'Flank|NLRP12_uc002qci.3_Silent_p.G674G|NLRP12_uc002qcj.3_Silent_p.G674G|NLRP12_uc002qck.3_RNA|NLRP12_uc010eqx.2_Silent_p.G674G	NM_144687	NP_653288	P59046	NAL12_HUMAN	NLR family, pyrin domain containing 12 isoform	674					negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of interleukin-1 secretion|negative regulation of interleukin-6 biosynthetic process|negative regulation of protein autophosphorylation|negative regulation of Toll signaling pathway|positive regulation of inflammatory response|positive regulation of interleukin-1 beta secretion|regulation of interleukin-18 biosynthetic process|release of cytoplasmic sequestered NF-kappaB	cytoplasm	ATP binding|caspase activator activity|protein binding			ovary(4)|upper_aerodigestive_tract(2)|lung(1)	7	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.026)		CGCGGTCTTCCCCGTCCGCGC	0.612													13	27					0	0	0.013537	0	0
PRKCG	5582	broad.mit.edu	37	19	54403501	54403501	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:54403501C>T	uc002qcq.1	+	12	1578	c.1296C>T	c.(1294-1296)TTC>TTT	p.F432F	PRKCG_uc010yeg.1_Silent_p.F432F|PRKCG_uc010yeh.1_Silent_p.F319F	NM_002739	NP_002730	P05129	KPCG_HUMAN	protein kinase C, gamma	432	Protein kinase.				activation of phospholipase C activity|cell death|intracellular signal transduction|negative regulation of protein catabolic process|negative regulation of protein ubiquitination|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of mismatch repair|synaptic transmission	cytosol	ATP binding|protein kinase C activity|zinc ion binding			lung(4)|ovary(2)|pancreas(2)|large_intestine(1)	9	all_cancers(19;0.0462)|all_epithelial(19;0.0258)|all_lung(19;0.185)|Ovarian(34;0.19)|Lung NSC(19;0.218)			GBM - Glioblastoma multiforme(134;0.0521)		GCCTGTATTTCGTGATGGAGT	0.537													20	31					0	0	0.003330	0	0
VSTM1	284415	broad.mit.edu	37	19	54545038	54545038	+	Missense_Mutation	SNP	G	A	A	rs141064630		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:54545038G>A	uc002qcw.3	-	8	762	c.586C>T	c.(586-588)CTC>TTC	p.L196F	VSTM1_uc010erb.2_RNA|VSTM1_uc002qcx.3_Missense_Mutation_p.L165F	NM_198481	NP_940883	Q6UX27	VSTM1_HUMAN	V-set and transmembrane domain containing 1	196						integral to membrane					0	all_cancers(19;0.0128)|all_epithelial(19;0.00564)|all_lung(19;0.031)|Lung NSC(19;0.0358)|Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.165)		CTCACCGAGAGAGATACCCTT	0.468													14	20					0	0	0.003163	0	0
TSEN34	79042	broad.mit.edu	37	19	54695980	54695980	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:54695980C>T	uc002qdu.2	+	4	610	c.501C>T	c.(499-501)TCC>TCT	p.S167S	MBOAT7_uc002qdq.2_5'Flank|MBOAT7_uc002qdr.2_5'Flank|MBOAT7_uc002qds.2_5'Flank|MBOAT7_uc010yen.1_5'Flank|MBOAT7_uc002qdt.3_5'Flank|TSEN34_uc010yeo.1_Silent_p.S167S|TSEN34_uc002qdv.2_Silent_p.S167S|TSEN34_uc002qdw.2_Silent_p.S167S	NM_024075	NP_076980	Q9BSV6	SEN34_HUMAN	tRNA-intron endonuclease 34	167					mRNA processing|tRNA-type intron splice site recognition and cleavage	nucleolus|tRNA-intron endonuclease complex	nucleic acid binding|tRNA-intron endonuclease activity				0	all_cancers(19;0.00723)|all_epithelial(19;0.00389)|all_lung(19;0.0175)|Lung NSC(19;0.0325)|Ovarian(34;0.19)					CCTCGTCTTCCCAAGCAGGAC	0.607													12	54					0	0	0.001855	0	0
LILRB2	10288	broad.mit.edu	37	19	54783313	54783313	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:54783313G>A	uc002qfb.2	-	5	811	c.545C>T	c.(544-546)TCC>TTC	p.S182F	LILRA6_uc002qew.1_Intron|LILRB2_uc010eri.2_Missense_Mutation_p.S182F|LILRB2_uc010erj.2_RNA|LILRB2_uc002qfc.2_Missense_Mutation_p.S182F|LILRB2_uc010yet.1_Missense_Mutation_p.S66F|LILRB2_uc010yeu.1_RNA	NM_005874	NP_005865	Q8N423	LIRB2_HUMAN	leukocyte immunoglobulin-like receptor,	182	Extracellular (Potential).|Ig-like C2-type 2.				cell surface receptor linked signaling pathway|cell-cell signaling|cellular defense response|immune response|regulation of immune response	integral to plasma membrane|membrane fraction	receptor activity			skin(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		GGGGCCCACGGAGAAGATGGC	0.577													25	43					0	0	0.005443	0	0
LENG8	114823	broad.mit.edu	37	19	54967259	54967259	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:54967259C>T	uc002qfv.1	+	8	1172	c.1028C>T	c.(1027-1029)TCC>TTC	p.S343F	LENG8_uc002qfw.2_Missense_Mutation_p.S380F			Q96PV6	LENG8_HUMAN	RecName: Full=Leukocyte receptor cluster member 8;	343							protein binding			central_nervous_system(1)|pancreas(1)	2	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.139)		GGTGCCCCGTCCCAGCGAGGG	0.672													18	34					0	0	0.004990	0	0
LILRA2	11027	broad.mit.edu	37	19	55086930	55086930	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:55086930C>T	uc002qgg.3	+	5	952	c.863C>T	c.(862-864)TCC>TTC	p.S288F	LILRA2_uc010ern.2_Missense_Mutation_p.S288F|LILRA2_uc002qgf.2_Missense_Mutation_p.S288F|LILRA2_uc010yfe.1_Missense_Mutation_p.S288F|LILRA2_uc010yff.1_Missense_Mutation_p.S276F|LILRA2_uc010ero.2_Missense_Mutation_p.S276F|LILRA2_uc010yfg.1_Intron	NM_001130917	NP_001124389	Q8N149	LIRA2_HUMAN	leukocyte immunoglobulin-like receptor,	288	Ig-like C2-type 3.|Extracellular (Potential).				defense response	integral to membrane	antigen binding|receptor activity			ovary(1)	1				GBM - Glioblastoma multiforme(193;0.0963)		GTGAGCCCCTCCCACGGGGGC	0.647													22	40					0	0	0.010504	0	0
LILRA1	11024	broad.mit.edu	37	19	55106129	55106129	+	Splice_Site	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:55106129G>A	uc002qgh.1	+	4	253	c.71_splice	c.e4-1	p.G24_splice	LILRA2_uc010yfg.1_Intron|LILRA1_uc010yfh.1_Splice_Site_p.G24_splice	NM_006863	NP_006854	O75019	LIRA1_HUMAN	leukocyte immunoglobulin-like receptor,						cell surface receptor linked signaling pathway|defense response|regulation of immune response	integral to membrane|plasma membrane	antigen binding|transmembrane receptor activity			skin(2)|ovary(1)	3				GBM - Glioblastoma multiforme(193;0.0348)		TTTCCTTCCAGGGACCCTCCC	0.582													21	51					0	0	0.014323	0	0
LILRA1	11024	broad.mit.edu	37	19	55106176	55106176	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:55106176C>T	uc002qgh.1	+	4	299	c.117C>T	c.(115-117)ATC>ATT	p.I39I	LILRA2_uc010yfg.1_Intron|LILRA1_uc010yfh.1_Silent_p.I39I	NM_006863	NP_006854	O75019	LIRA1_HUMAN	leukocyte immunoglobulin-like receptor,	39	Ig-like C2-type 1.|Extracellular (Potential).				cell surface receptor linked signaling pathway|defense response|regulation of immune response	integral to membrane|plasma membrane	antigen binding|transmembrane receptor activity			skin(2)|ovary(1)	3				GBM - Glioblastoma multiforme(193;0.0348)		GCTCTGTGATCACCCAGGGGA	0.542													17	64					0	0	0.004007	0	0
LILRB1	10859	broad.mit.edu	37	19	55144765	55144765	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:55144765C>T	uc002qgj.2	+	8	1597	c.1257C>T	c.(1255-1257)GTC>GTT	p.V419V	LILRB1_uc010erp.1_Intron|LILRB1_uc002qgl.2_Silent_p.V419V|LILRB1_uc002qgk.2_Silent_p.V419V|LILRB1_uc002qgm.2_Silent_p.V419V|LILRB1_uc010erq.2_Silent_p.V419V|LILRB1_uc010err.2_RNA	NM_006669	NP_006660	Q8NHL6	LIRB1_HUMAN	leukocyte immunoglobulin-like receptor,	419	Extracellular (Potential).				regulation of immune response|response to virus	integral to membrane|plasma membrane	protein phosphatase 1 binding|receptor activity			large_intestine(1)|ovary(1)|skin(1)	3				GBM - Glioblastoma multiforme(193;0.0188)		AGCTCGTGGTCTCAGGTGGGG	0.637										HNSCC(37;0.09)			7	68					0	0	0.004482	0	0
LILRB1	10859	broad.mit.edu	37	19	55146120	55146120	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:55146120C>T	uc002qgj.2	+	11	1729	c.1389C>T	c.(1387-1389)ATC>ATT	p.I463I	LILRB1_uc010erp.1_Silent_p.I78I|LILRB1_uc002qgl.2_Silent_p.I463I|LILRB1_uc002qgk.2_Silent_p.I464I|LILRB1_uc002qgm.2_Silent_p.I464I|LILRB1_uc010erq.2_Silent_p.I447I|LILRB1_uc010err.2_RNA	NM_006669	NP_006660	Q8NHL6	LIRB1_HUMAN	leukocyte immunoglobulin-like receptor,	463	Helical; (Potential).				regulation of immune response|response to virus	integral to membrane|plasma membrane	protein phosphatase 1 binding|receptor activity			large_intestine(1)|ovary(1)|skin(1)	3				GBM - Glioblastoma multiforme(193;0.0188)		GGGTTGTGATCGGCATCTTGG	0.358										HNSCC(37;0.09)			5	21					0	0	0.000602	0	0
LILRP2	79166	broad.mit.edu	37	19	55221680	55221680	+	RNA	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:55221680G>A	uc002qgs.1	+	1		c.2080G>A			LILRP2_uc002qgt.1_Intron	NR_003061				Homo sapiens leukocyte immunoglobulin-like receptor pseudogene 2 (LILRP2), non-coding RNA.												0						GCTCCGCACAGGCCCTGCTGG	0.672													6	10					0	0	0.001168	0	0
KIR3DP1	768329	broad.mit.edu	37	19	55297935	55297935	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:55297935C>T	uc010yfi.1	+	3	92	c.91C>T	c.(91-93)CTC>TTC	p.L31F	KIR2DS4_uc010yfj.1_Intron|KIR2DS4_uc010yfk.1_Intron|KIR2DL4_uc010yfl.1_Intron	NM_001015070	NP_001015070			killer-cell Ig-like receptor												0				GBM - Glioblastoma multiforme(193;0.0192)		CAAGCCCTTCCTCTCTGCCTG	0.557													19	37					0	0	0.009535	0	0
KIR2DS4	3809	broad.mit.edu	37	19	55350941	55350941	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:55350941G>A	uc002qhm.1	+	4	475	c.429G>A	c.(427-429)GAG>GAA	p.E143E	KIR2DS4_uc010yfj.1_Silent_p.E136E|KIR2DS4_uc010yfk.1_RNA|KIR3DL1_uc002qhl.3_Intron|KIR2DS4_uc010esg.1_Silent_p.E143E|KIR2DS4_uc002qhn.1_Intron	NM_012314	NP_036446	P43632	KI2S4_HUMAN	killer cell immunoglobulin-like receptor, two	143	Extracellular (Potential).|Ig-like C2-type 2.					integral to plasma membrane	receptor activity				0				GBM - Glioblastoma multiforme(193;0.0192)		AGGCAGGAGAGAATGTGACCT	0.582													54	137					0	0	0.014410	0	0
KIR3DL1	3811	broad.mit.edu	37	19	55378036	55378036	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:55378036C>T	uc002qhl.3	+	9	1281	c.1218C>T	c.(1216-1218)TTC>TTT	p.F406F	KIR3DL2_uc010esh.2_Silent_p.F389F|KIR3DL2_uc002qho.3_Silent_p.F406F			P43629	KI3L1_HUMAN	SubName: Full=KIR3DS1;	406	Cytoplasmic (Potential).				immune response|regulation of immune response	integral to plasma membrane	HLA-B specific inhibitory MHC class I receptor activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|skin(1)	5				GBM - Glioblastoma multiforme(193;0.0192)		ACTGCGTTTTCATACAGAGAA	0.517													74	203					0	0	0.014410	0	0
FCAR	2204	broad.mit.edu	37	19	55401169	55401169	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:55401169G>A	uc002qhr.1	+	5	1001	c.804G>A	c.(802-804)TGG>TGA	p.W268*	FCAR_uc002qhs.1_RNA|FCAR_uc002qht.1_Nonsense_Mutation_p.W219*|FCAR_uc010esi.1_Nonsense_Mutation_p.W145*|FCAR_uc002qhu.1_Nonsense_Mutation_p.W172*|FCAR_uc002qhv.1_Nonsense_Mutation_p.W246*|FCAR_uc002qhw.1_Nonsense_Mutation_p.W256*|FCAR_uc002qhx.1_Nonsense_Mutation_p.W160*|FCAR_uc002qhy.1_Nonsense_Mutation_p.W234*|FCAR_uc002qhz.1_3'UTR|FCAR_uc002qia.1_Nonsense_Mutation_p.W159*	NM_002000	NP_001991	P24071	FCAR_HUMAN	Fc alpha receptor isoform a precursor	268	Cytoplasmic (Potential).				immune response	extracellular region|integral to plasma membrane	IgA binding|receptor activity			ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(193;0.0443)		AACCGAGCTGGAGCCAACAGA	0.547													55	106					0	0	0.014410	0	0
NLRP7	199713	broad.mit.edu	37	19	55449535	55449535	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:55449535G>A	uc002qih.3	-	5	2082	c.2006C>T	c.(2005-2007)TCT>TTT	p.S669F	NLRP7_uc002qig.3_Intron|NLRP7_uc002qii.3_Missense_Mutation_p.S669F|NLRP7_uc010esk.2_Missense_Mutation_p.S669F|NLRP7_uc010esl.2_Missense_Mutation_p.S697F	NM_206828	NP_996611	Q8WX94	NALP7_HUMAN	NACHT, leucine rich repeat and PYD containing 7	669							ATP binding			large_intestine(1)|breast(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(193;0.0325)		GCTGAAGAGAGAGCAGAAATC	0.502													45	98					0	0	0.014410	0	0
NLRP7	199713	broad.mit.edu	37	19	55451341	55451341	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:55451341G>A	uc002qih.3	-	4	922	c.846C>T	c.(844-846)CTC>CTT	p.L282L	NLRP7_uc002qig.3_Silent_p.L282L|NLRP7_uc002qii.3_Silent_p.L282L|NLRP7_uc010esk.2_Silent_p.L282L|NLRP7_uc010esl.2_Silent_p.L310L	NM_206828	NP_996611	Q8WX94	NALP7_HUMAN	NACHT, leucine rich repeat and PYD containing 7	282	NACHT.						ATP binding			large_intestine(1)|breast(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(193;0.0325)		AACTCCCCAGGAGGACGGGCA	0.632													15	31					0	0	0.003163	0	0
NLRP2	55655	broad.mit.edu	37	19	55492998	55492998	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:55492998G>A	uc002qij.2	+	5	497	c.411G>A	c.(409-411)ACG>ACA	p.T137T	NLRP2_uc010yfp.1_Silent_p.T114T|NLRP2_uc010esn.2_Silent_p.T113T|NLRP2_uc010eso.2_Silent_p.T134T|NLRP2_uc010esp.2_Intron	NM_017852	NP_060322	Q9NX02	NALP2_HUMAN	NLR family, pyrin domain containing 2	137					apoptosis|positive regulation of caspase activity|positive regulation of interleukin-1 beta secretion	cytoplasm	ATP binding|Pyrin domain binding			ovary(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(297;0.163)	GBM - Glioblastoma multiforme(193;0.028)		TTACAGAAACGAAAGGAAATG	0.323													24	49					0	0	0.003954	0	0
EPS8L1	54869	broad.mit.edu	37	19	55591120	55591120	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:55591120G>A	uc002qis.3	+	5	284	c.180G>A	c.(178-180)AGG>AGA	p.R60R	EPS8L1_uc010ess.1_Silent_p.R42R|EPS8L1_uc010est.1_Silent_p.R60R|EPS8L1_uc010yfr.1_5'UTR|EPS8L1_uc010esu.1_RNA|EPS8L1_uc002qiu.2_5'Flank|EPS8L1_uc002qiv.2_5'Flank|EPS8L1_uc002qiw.2_5'Flank	NM_133180	NP_573441	Q8TE68	ES8L1_HUMAN	epidermal growth factor receptor pathway	60						cytoplasm					0			BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.044)		ATGCCTCCAGGAAGTTGGCCG	0.622													14	33					0	0	0.002450	0	0
TNNT1	7138	broad.mit.edu	37	19	55649424	55649424	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:55649424C>T	uc002qjb.3	-	10	495	c.406G>A	c.(406-408)GAA>AAA	p.E136K	TNNT1_uc002qiz.3_Missense_Mutation_p.E66K|TNNT1_uc002qja.3_Missense_Mutation_p.E66K|TNNT1_uc002qjc.3_Missense_Mutation_p.E136K|TNNT1_uc002qje.3_Missense_Mutation_p.E125K|TNNT1_uc002qjd.3_Missense_Mutation_p.E125K|TNNT1_uc002qjf.2_Missense_Mutation_p.E132K	NM_003283	NP_003274	P13805	TNNT1_HUMAN	troponin T1, skeletal, slow isoform a	136					muscle filament sliding|negative regulation of muscle contraction	cytosol|troponin complex	tropomyosin binding			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.047)		TCTTCCTCTTCCTTCCTCATC	0.567													14	50					0	0	0.004007	0	0
SYT5	6861	broad.mit.edu	37	19	55687180	55687180	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:55687180G>A	uc002qjm.1	-	4	1497	c.437C>T	c.(436-438)CCC>CTC	p.P146L	SYT5_uc002qjp.2_Missense_Mutation_p.P143L|SYT5_uc002qjn.1_Missense_Mutation_p.P146L|SYT5_uc002qjo.1_Missense_Mutation_p.P146L	NM_003180	NP_003171	O00445	SYT5_HUMAN	synaptotagmin V	146	Cytoplasmic (Potential).|C2 1.				energy reserve metabolic process|regulation of insulin secretion|synaptic transmission	cell junction|integral to membrane|recycling endosome membrane|synaptic vesicle membrane	metal ion binding|transporter activity				0			BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.0452)		CCGCACATAGGGGTCCGAGGA	0.627													21	51					0	0	0.010504	0	0
U2AF2	11338	broad.mit.edu	37	19	56173923	56173923	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:56173923C>T	uc002qlu.2	+	6	1597	c.542C>T	c.(541-543)GCC>GTC	p.A181V	U2AF2_uc002qlt.2_Missense_Mutation_p.A181V	NM_007279	NP_009210	P26368	U2AF2_HUMAN	U2 (RNU2) small nuclear RNA auxiliary factor 2	181	RRM 1.				mRNA 3'-end processing|mRNA export from nucleus|termination of RNA polymerase II transcription	nucleoplasm|spliceosomal complex	enzyme binding|nucleotide binding|RNA binding			ovary(1)	1		Colorectal(82;0.00244)|Ovarian(87;0.133)	BRCA - Breast invasive adenocarcinoma(297;0.18)	GBM - Glioblastoma multiforme(193;0.107)		CTGACCCAGGCCCCTGGCAAC	0.498													11	72					0	0	0.010729	0	0
EPN1	29924	broad.mit.edu	37	19	56204341	56204342	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:56204341_56204342CC>TT	uc002qlw.2	+	9	1544_1545	c.1202_1203CC>TT	c.(1201-1203)CCC>CTT	p.P401L	EPN1_uc002qlv.2_Missense_Mutation_p.P375L|EPN1_uc010etd.2_Missense_Mutation_p.P400L|EPN1_uc002qlx.2_Missense_Mutation_p.P487L	NM_001130072	NP_001123544	Q9Y6I3	EPN1_HUMAN	epsin 1 isoform b	401	Ala/Gly/Pro-rich.				endocytosis|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway	coated pit|cytoplasm|nucleus|plasma membrane	lipid binding				0		Colorectal(82;0.00244)|Ovarian(87;0.133)		GBM - Glioblastoma multiforme(193;0.112)		GACACGGAGCCCGACGAGTTCT	0.703													27	91					0	0	0.004672	0	0
NLRP9	338321	broad.mit.edu	37	19	56223927	56223927	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:56223927G>A	uc002qly.2	-	7	2559	c.2531C>T	c.(2530-2532)TCC>TTC	p.S844F		NM_176820	NP_789790	Q7RTR0	NALP9_HUMAN	NLR family, pyrin domain containing 9	844	LRR 4.					cytoplasm	ATP binding			skin(4)|ovary(2)|breast(1)	7		Colorectal(82;0.000133)|Ovarian(87;0.133)		GBM - Glioblastoma multiforme(193;0.123)		GTCCTTACAGGAATCGGAAGT	0.428													7	39					0	0	0.008291	0	0
NLRP9	338321	broad.mit.edu	37	19	56226547	56226547	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:56226547G>A	uc002qly.2	-	6	2403	c.2375C>T	c.(2374-2376)TCC>TTC	p.S792F		NM_176820	NP_789790	Q7RTR0	NALP9_HUMAN	NLR family, pyrin domain containing 9	792	LRR 2.					cytoplasm	ATP binding			skin(4)|ovary(2)|breast(1)	7		Colorectal(82;0.000133)|Ovarian(87;0.133)		GBM - Glioblastoma multiforme(193;0.123)		GAGGACTTCGGAAATGGAGTC	0.527													15	23					0	0	0.004007	0	0
NLRP9	338321	broad.mit.edu	37	19	56244734	56244734	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:56244734C>T	uc002qly.2	-	2	491	c.463G>A	c.(463-465)GGA>AGA	p.G155R		NM_176820	NP_789790	Q7RTR0	NALP9_HUMAN	NLR family, pyrin domain containing 9	155	NACHT.|ATP (Potential).					cytoplasm	ATP binding			skin(4)|ovary(2)|breast(1)	7		Colorectal(82;0.000133)|Ovarian(87;0.133)		GBM - Glioblastoma multiforme(193;0.123)		TTTCCAATTCCATCAGGACCT	0.413													8	62					0	0	0.006214	0	0
NLRP4	147945	broad.mit.edu	37	19	56369963	56369963	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:56369963C>T	uc002qmd.3	+	3	1626	c.1204C>T	c.(1204-1206)CTG>TTG	p.L402L	NLRP4_uc002qmf.2_Silent_p.L327L|NLRP4_uc010etf.2_Silent_p.L233L	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	402	NACHT.						ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		CCTGTGCTCCCTGGCTGCAGA	0.572													35	72					0	0	0.007835	0	0
NLRP4	147945	broad.mit.edu	37	19	56372834	56372834	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:56372834G>A	uc002qmd.3	+	4	2361	c.1939G>A	c.(1939-1941)GAC>AAC	p.D647N	NLRP4_uc002qmf.2_Missense_Mutation_p.D572N|NLRP4_uc010etf.2_Missense_Mutation_p.D478N	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	647	LRR 1.						ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		CCAGGTGCAGGACAGCACCCT	0.567													19	40					0	0	0.008871	0	0
NLRP13	126204	broad.mit.edu	37	19	56413423	56413423	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:56413423C>T	uc010ygg.1	-	9	2792	c.2767G>A	c.(2767-2769)GAT>AAT	p.D923N		NM_176810	NP_789780	Q86W25	NAL13_HUMAN	NACHT, leucine rich repeat and PYD containing	923	LRR 5.						ATP binding			skin(4)|ovary(3)|pancreas(1)|lung(1)	9		Colorectal(82;3.48e-05)|Ovarian(87;0.0481)|Renal(1328;0.218)		GBM - Glioblastoma multiforme(193;0.0642)		AGGTTACCATCTGGGCGACCC	0.547													9	46					0	0	0.008291	0	0
NLRP13	126204	broad.mit.edu	37	19	56416475	56416475	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:56416475C>T	uc010ygg.1	-	8	2476	c.2451G>A	c.(2449-2451)CTG>CTA	p.L817L		NM_176810	NP_789780	Q86W25	NAL13_HUMAN	NACHT, leucine rich repeat and PYD containing	817							ATP binding			skin(4)|ovary(3)|pancreas(1)|lung(1)	9		Colorectal(82;3.48e-05)|Ovarian(87;0.0481)|Renal(1328;0.218)		GBM - Glioblastoma multiforme(193;0.0642)		TGCATTTCTCCAGGCTGTGGA	0.537													7	55					0	0	0.004482	0	0
NLRP13	126204	broad.mit.edu	37	19	56423273	56423273	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:56423273C>T	uc010ygg.1	-	5	1935	c.1910G>A	c.(1909-1911)CGA>CAA	p.R637Q		NM_176810	NP_789780	Q86W25	NAL13_HUMAN	NACHT, leucine rich repeat and PYD containing	637							ATP binding			skin(4)|ovary(3)|pancreas(1)|lung(1)	9		Colorectal(82;3.48e-05)|Ovarian(87;0.0481)|Renal(1328;0.218)		GBM - Glioblastoma multiforme(193;0.0642)		GTGAAAAAGTCGTAGAATGTG	0.413													14	27					0	0	0.002450	0	0
NLRP13	126204	broad.mit.edu	37	19	56423744	56423744	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:56423744C>T	uc010ygg.1	-	5	1464	c.1439G>A	c.(1438-1440)TGG>TAG	p.W480*		NM_176810	NP_789780	Q86W25	NAL13_HUMAN	NACHT, leucine rich repeat and PYD containing	480	NACHT.						ATP binding			skin(4)|ovary(3)|pancreas(1)|lung(1)	9		Colorectal(82;3.48e-05)|Ovarian(87;0.0481)|Renal(1328;0.218)		GBM - Glioblastoma multiforme(193;0.0642)		GAGGGCCCTCCATTGTCCTGG	0.488													27	39					0	0	0.006320	0	0
ZNF582	147948	broad.mit.edu	37	19	56895941	56895941	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:56895941G>A	uc002qmz.1	-	5	1004	c.845C>T	c.(844-846)CCC>CTC	p.P282L	ZNF582_uc002qmy.2_Missense_Mutation_p.P313L	NM_144690	NP_653291	Q96NG8	ZN582_HUMAN	zinc finger protein 582	282					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|large_intestine(1)	4		Colorectal(82;0.000256)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0547)		ACACTGATAGGGTTTCTCGCC	0.418													10	37					0	0	0.010729	0	0
PEG3	5178	broad.mit.edu	37	19	57328787	57328787	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:57328787G>A	uc002qnu.2	-	7	1374	c.1023C>T	c.(1021-1023)TTC>TTT	p.F341F	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Silent_p.F312F|PEG3_uc002qnv.2_Silent_p.F341F|PEG3_uc002qnw.2_Silent_p.F217F|PEG3_uc002qnx.2_Silent_p.F215F|PEG3_uc010etr.2_Silent_p.F341F	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	341					apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		ACATTCTGGGGAATCTCTGTG	0.473													7	47					0	0	0.001984	0	0
USP29	57663	broad.mit.edu	37	19	57642615	57642615	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:57642615G>A	uc002qny.2	+	4	2928	c.2572G>A	c.(2572-2574)GAT>AAT	p.D858N		NM_020903	NP_065954	Q9HBJ7	UBP29_HUMAN	ubiquitin specific peptidase 29	858					protein modification process|ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(6)|ovary(2)|breast(2)|pancreas(1)	11		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		CACATACAACGATCTATGTGT	0.453													18	36					0	0	0.007413	0	0
ZIM3	114026	broad.mit.edu	37	19	57649931	57649931	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:57649931G>A	uc002qnz.1	-	3	437	c.51C>T	c.(49-51)TTC>TTT	p.F17F		NM_052882	NP_443114	Q96PE6	ZIM3_HUMAN	zinc finger, imprinted 3	17	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)|skin(1)	2		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.243)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		CCCCCTGGGTGAAGTTCACAG	0.493													30	56					0	0	0.003755	0	0
ZNF211	10520	broad.mit.edu	37	19	58144753	58144753	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:58144753C>T	uc002qpq.2	+	1	219	c.39C>T	c.(37-39)GTC>GTT	p.V13V	ZNF211_uc010yhb.1_Intron|ZNF211_uc002qpp.2_Silent_p.V13V|ZNF211_uc002qpr.2_5'UTR|ZNF211_uc002qps.2_Silent_p.V13V|ZNF211_uc002qpt.2_5'UTR|ZNF211_uc010yhc.1_5'UTR|ZNF211_uc010yhd.1_Intron|ZNF211_uc010yhe.1_Intron	NM_198855	NP_942152	Q13398	ZN211_HUMAN	zinc finger protein 211 isoform 2	13						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		AGCTCCCGGTCCAGCTCCGCC	0.726													6	18					0	0	0.003080	0	0
ZSCAN4	201516	broad.mit.edu	37	19	58189923	58189923	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:58189923C>T	uc002qpu.2	+	5	1649	c.952C>T	c.(952-954)CCC>TCC	p.P318S		NM_152677	NP_689890	Q8NAM6	ZSCA4_HUMAN	zinc finger and SCAN domain containing 4	318	C2H2-type 1.				telomere maintenance via telomere lengthening|viral reproduction	nuclear chromosome, telomeric region	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0577)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		TGAAGAATGCCCCAAGGTCTT	0.448													17	45					0	0	0.007413	0	0
ZNF551	90233	broad.mit.edu	37	19	58198211	58198211	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:58198211C>T	uc002qpw.3	+	3	743	c.520C>T	c.(520-522)CCC>TCC	p.P174S	ZNF551_uc002qpv.3_Missense_Mutation_p.P117S|ZNF776_uc002qpx.2_Intron	NM_138347	NP_612356	Q7Z340	ZN551_HUMAN	zinc finger protein 551	190					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0577)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0257)		CTTCCCAGCCCCCACGGACCT	0.502													11	56					0	0	0.010729	0	0
ZNF417	147687	broad.mit.edu	37	19	58421035	58421035	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:58421035G>A	uc002qqq.2	-	3	810	c.611C>T	c.(610-612)CCC>CTC	p.P204L	ZNF417_uc010yhm.1_Missense_Mutation_p.P161L|ZNF417_uc002qqr.2_Missense_Mutation_p.P203L	NM_152475	NP_689688	Q8TAU3	ZN417_HUMAN	zinc finger protein 417	204					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0151)		CTCCTGAAAGGGTGGGCCATG	0.468													26	62					0	0	0.014410	0	0
ZNF135	7694	broad.mit.edu	37	19	58578377	58578377	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:58578377C>T	uc010yhq.1	+	5	657	c.561C>T	c.(559-561)CTC>CTT	p.L187L	ZNF135_uc002qre.2_Silent_p.L175L|ZNF135_uc002qrd.1_Silent_p.L133L|ZNF135_uc002qrf.2_Silent_p.L133L|ZNF135_uc002qrg.2_Silent_p.L145L|ZNF135_uc010yhr.1_5'UTR	NM_003436	NP_003427	B4DHH9	B4DHH9_HUMAN	zinc finger protein 135 isoform 2	187					regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0412)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0161)		ACCCTGATCTCCCACATCAAC	0.522													6	31					0	0	0.003080	0	0
ZNF8	7554	broad.mit.edu	37	19	58797124	58797124	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:58797124G>A	uc002qry.1	+	2	238	c.108G>A	c.(106-108)CAG>CAA	p.Q36Q	ZNF8_uc002qrz.2_RNA	NM_021089	NP_066575	P17098	ZNF8_HUMAN	zinc finger protein 8	36	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		all_cancers(17;6.46e-05)|Lung NSC(17;0.0233)|all_neural(62;0.0381)|all_epithelial(17;0.0427)|all_lung(17;0.057)|Ovarian(87;0.17)|Colorectal(82;0.227)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.00619)		ACTTTACCCAGGAGGAATGGG	0.547													44	68					0	0	0.013114	0	0
ZSCAN22	342945	broad.mit.edu	37	19	58850520	58850520	+	Missense_Mutation	SNP	C	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:58850520C>A	uc002qsc.2	+	3	1451	c.1304C>A	c.(1303-1305)CCA>CAA	p.P435Q	ZSCAN22_uc010yhz.1_3'UTR	NM_181846	NP_862829	P10073	ZSC22_HUMAN	zinc finger and SCAN domain containing 22	435					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			pancreas(1)	1		all_cancers(17;3.11e-12)|all_epithelial(17;9.43e-09)|Colorectal(82;0.000256)|Lung NSC(17;0.000607)|all_lung(17;0.0024)|all_neural(62;0.0412)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0289)		GGAGAGAAGCCATATCAGTGT	0.562													17	59					2.89027e-11	3.11589e-11	0.014323	1	0
SLC27A5	10998	broad.mit.edu	37	19	59010864	59010864	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:59010864G>A	uc002qtc.2	-	7	1772	c.1662C>T	c.(1660-1662)ACC>ACT	p.T554T	SLC27A5_uc002qtb.2_5'Flank	NM_012254	NP_036386	Q9Y2P5	S27A5_HUMAN	solute carrier family 27 (fatty acid	554	Cytoplasmic (Probable).				bile acid and bile salt transport|bile acid biosynthetic process|very long-chain fatty acid metabolic process	endoplasmic reticulum membrane|integral to membrane	ATP binding|cholate-CoA ligase activity|long-chain fatty acid-CoA ligase activity				0		all_cancers(17;4.4e-22)|all_epithelial(17;2.15e-16)|Lung NSC(17;1.24e-06)|all_lung(17;5.41e-06)|Colorectal(82;3.46e-05)|Renal(17;0.00179)|all_neural(62;0.00607)|Ovarian(87;0.0443)|Breast(46;0.0928)|Medulloblastoma(540;0.184)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0168)|Lung(386;0.181)		CGGACCGGAAGGTGTCCCCGA	0.657													22	43					0	0	0.014323	0	0
TPO	7173	broad.mit.edu	37	2	1500513	1500513	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:1500513G>A	uc002qww.2	+	13	2453	c.2362G>A	c.(2362-2364)GAT>AAT	p.D788N	TPO_uc010ewj.2_Intron|TPO_uc002qwu.2_Missense_Mutation_p.D731N|TPO_uc002qwr.2_Missense_Mutation_p.D788N|TPO_uc002qwx.2_Missense_Mutation_p.D731N|TPO_uc010yio.1_Missense_Mutation_p.D615N|TPO_uc010yip.1_Missense_Mutation_p.D788N|TPO_uc002qwy.1_Missense_Mutation_p.D128N|TPO_uc002qwz.2_Intron	NM_000547	NP_000538	P07202	PERT_HUMAN	thyroid peroxidase isoform a	788	Extracellular (Potential).|Sushi.				cellular nitrogen compound metabolic process|hormone biosynthetic process|hydrogen peroxide catabolic process	cell surface|cytoplasm|integral to plasma membrane	calcium ion binding|heme binding|iodide peroxidase activity			ovary(7)|pancreas(6)|skin(5)|lung(1)|kidney(1)	20	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;0.0338)		all cancers(51;0.0356)|OV - Ovarian serous cystadenocarcinoma(76;0.0748)|Epithelial(75;0.12)	Carbimazole(DB00389)|Methimazole(DB00763)|Propylthiouracil(DB00550)	GGAAGGATGGGATTTCCAGCC	0.507													32	75					0	0	0.004878	0	0
PXDN	7837	broad.mit.edu	37	2	1670155	1670155	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:1670155G>A	uc002qxa.2	-	10	1186	c.1122C>T	c.(1120-1122)TCC>TCT	p.S374S	PXDN_uc002qxb.1_Silent_p.S374S|PXDN_uc002qxc.1_Silent_p.S191S	NM_012293	NP_036425	Q92626	PXDN_HUMAN	peroxidasin precursor	374	Ig-like C2-type 2.				extracellular matrix organization|hydrogen peroxide catabolic process|immune response	endoplasmic reticulum|extracellular space|proteinaceous extracellular matrix	extracellular matrix structural constituent|heme binding|interleukin-1 receptor antagonist activity|peroxidase activity			pancreas(6)|ovary(2)	8	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.0845)|Lung NSC(108;0.00641)|all_epithelial(98;0.00716)		all cancers(51;0.0492)|OV - Ovarian serous cystadenocarcinoma(76;0.0973)|Epithelial(75;0.17)|GBM - Glioblastoma multiforme(21;0.228)		CTCTCGTCCAGGAGATCCGCG	0.622													8	23					0	0	0.006214	0	0
MYT1L	23040	broad.mit.edu	37	2	1983498	1983498	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:1983498G>A	uc002qxe.2	-	6	879	c.52C>T	c.(52-54)CGA>TGA	p.R18*	MYT1L_uc002qxd.2_Nonsense_Mutation_p.R18*|MYT1L_uc002qxf.1_RNA	NM_015025	NP_055840	Q9UL68	MYT1L_HUMAN	myelin transcription factor 1-like	18					cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|central_nervous_system(1)	6	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.037)|all_epithelial(98;0.241)		OV - Ovarian serous cystadenocarcinoma(76;0.169)|all cancers(51;0.244)		GACATACCTCGAACCCCTTTG	0.587													18	10					0	0	0.006122	0	0
TTC15	51112	broad.mit.edu	37	2	3428392	3428392	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:3428392C>T	uc002qxm.1	+	5	1581	c.1375C>T	c.(1375-1377)CTT>TTT	p.L459F	TTC15_uc002qxn.1_Missense_Mutation_p.L459F|TTC15_uc010ewm.1_Missense_Mutation_p.L459F	NM_016030	NP_057114	Q8WVT3	TTC15_HUMAN	tetratricopeptide repeat domain 15	459							binding			ovary(2)|breast(1)|pancreas(1)	4	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.093)	all_cancers(51;0.214)		OV - Ovarian serous cystadenocarcinoma(76;0.0402)|Epithelial(75;0.0986)|all cancers(51;0.149)		TCAGCCAGATCTTTATTACGA	0.463													34	137					0	0	0.004878	0	0
ASAP2	8853	broad.mit.edu	37	2	9517083	9517083	+	Missense_Mutation	SNP	G	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:9517083G>T	uc002qzh.2	+	18	2133	c.1793G>T	c.(1792-1794)CGA>CTA	p.R598L	ASAP2_uc002qzi.2_Missense_Mutation_p.R598L	NM_003887	NP_003878	O43150	ASAP2_HUMAN	ArfGAP with SH3 domain, ankyrin repeat and PH	598	ANK 1.				regulation of ARF GTPase activity	Golgi cisterna membrane|plasma membrane	ARF GTPase activator activity|protein binding|zinc ion binding				0						TCCGTGGATCGAACCTCTCTT	0.448													18	124					2.44723e-14	2.64075e-14	0.004656	1	0
GRHL1	29841	broad.mit.edu	37	2	10105479	10105479	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:10105479C>T	uc002raa.2	+	8	1250	c.1079C>T	c.(1078-1080)TCC>TTC	p.S360F	GRHL1_uc002rab.2_RNA|GRHL1_uc002rad.2_Missense_Mutation_p.S171F|GRHL1_uc010yjb.1_Missense_Mutation_p.S209F	NM_198182	NP_937825	Q9NZI5	GRHL1_HUMAN	grainyhead-like 1	360					cellular lipid metabolic process|multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	Golgi apparatus|nucleus	DNA binding			pancreas(1)|skin(1)	2	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.172)|OV - Ovarian serous cystadenocarcinoma(76;0.246)		AACGCCATTTCCTTCACATGG	0.443													23	39					0	0	0.002780	0	0
KCNF1	3754	broad.mit.edu	37	2	11053886	11053886	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:11053886C>T	uc002rax.2	+	1	1824	c.1334C>T	c.(1333-1335)TCC>TTC	p.S445F		NM_002236	NP_002227	Q9H3M0	KCNF1_HUMAN	potassium voltage-gated channel, subfamily F,	445	Cytoplasmic (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.191)			Epithelial(75;0.115)|OV - Ovarian serous cystadenocarcinoma(76;0.128)		ACCGGGGGCTCCCGCAGTGAC	0.667													5	26					0	0	0.000602	0	0
E2F6	1876	broad.mit.edu	37	2	11593743	11593743	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:11593743G>A	uc002rbh.2	-	3	637	c.345C>T	c.(343-345)CTC>CTT	p.L115L	E2F6_uc002rbe.2_Silent_p.L40L|E2F6_uc002rbf.2_Silent_p.L83L|E2F6_uc002rbg.2_Silent_p.L40L|E2F6_uc002rbi.2_Silent_p.L40L|E2F6_uc010yjl.1_RNA|E2F6_uc002rbj.1_RNA	NM_198256	NP_937987	O75461	E2F6_HUMAN	E2F transcription factor 6	115	Potential.|DEF box.				negative regulation of transcription from RNA polymerase II promoter	MLL1 complex|transcription factor complex	DNA binding|transcription corepressor activity			skin(1)	1	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.114)|OV - Ovarian serous cystadenocarcinoma(76;0.168)		TCTTTTCAACGAGGTCGATTC	0.423													42	46					0	0	0.014410	0	0
NBAS	51594	broad.mit.edu	37	2	15427214	15427214	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:15427214G>A	uc002rcc.1	-	42	5147	c.5121C>T	c.(5119-5121)TTC>TTT	p.F1707F	NBAS_uc010exl.1_Silent_p.F779F|NBAS_uc002rcd.1_RNA	NM_015909	NP_056993	A2RRP1	NBAS_HUMAN	neuroblastoma-amplified protein	1707										ovary(2)|liver(1)|skin(1)	4						CCGTGAAGAGGAACTCCAAAT	0.423													10	49					0	0	0.008291	0	0
FAM49A	81553	broad.mit.edu	37	2	16742799	16742799	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:16742799C>T	uc010exm.1	-	6	586	c.438G>A	c.(436-438)ATG>ATA	p.M146I	FAM49A_uc002rck.1_Missense_Mutation_p.M146I	NM_030797	NP_110424	Q9H0Q0	FA49A_HUMAN	family with sequence similarity 49, member A	146						intracellular					0	Acute lymphoblastic leukemia(172;0.0734)|all_hematologic(175;0.088)		GBM - Glioblastoma multiforme(3;0.00969)			CCGGGTTCCTCATCTGAAATT	0.468													11	21					0	0	0.013537	0	0
RAD51AP2	729475	broad.mit.edu	37	2	17699657	17699657	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:17699657C>T	uc002rcl.1	-	1	50	c.26G>A	c.(25-27)CGG>CAG	p.R9Q	RAD51AP2_uc010exn.1_5'UTR	NM_001099218	NP_001092688	Q09MP3	R51A2_HUMAN	RAD51 associated protein 2	9										ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					CTCGGCCATCCGCGGCGTGGG	0.612													30	71					0	0	0.013726	0	0
GEN1	348654	broad.mit.edu	37	2	17950072	17950072	+	Missense_Mutation	SNP	T	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:17950072T>G	uc002rct.2	+	6	777	c.704T>G	c.(703-705)CTT>CGT	p.L235R	SMC6_uc010exo.2_Intron|GEN1_uc010yjs.1_Missense_Mutation_p.L235R|GEN1_uc002rcu.2_Missense_Mutation_p.L235R	NM_182625	NP_872431	Q17RS7	GEN_HUMAN	Gen homolog 1, endonuclease	235					DNA repair	nucleus	DNA binding|endonuclease activity|metal ion binding			breast(5)|kidney(1)|central_nervous_system(1)|skin(1)	8	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					CAAAGTTTACTTCAGAGGTAA	0.313								Homologous_recombination					11	17					0	0	0.010729	0	0
MATN3	4148	broad.mit.edu	37	2	20194161	20194161	+	Missense_Mutation	SNP	T	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:20194161T>G	uc002rdl.2	-	7	1367	c.1304A>C	c.(1303-1305)GAA>GCA	p.E435A	MATN3_uc010exu.1_Missense_Mutation_p.E393A	NM_002381	NP_002372	O15232	MATN3_HUMAN	matrilin 3 precursor	435					skeletal system development	proteinaceous extracellular matrix	extracellular matrix structural constituent|protein binding				0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TCTTCGTGCTTCCTCAGTGGC	0.398													11	9					0	0	0.008291	0	0
APOB	338	broad.mit.edu	37	2	21230014	21230014	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:21230014G>A	uc002red.2	-	26	9854	c.9726C>T	c.(9724-9726)CTC>CTT	p.L3242L		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	3242					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	AGGTCCTGGGGAGCTCGTCGT	0.378													88	243					0	0	0.014410	0	0
APOB	338	broad.mit.edu	37	2	21230037	21230037	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:21230037C>T	uc002red.2	-	26	9831	c.9703G>A	c.(9703-9705)GCT>ACT	p.A3235T		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	3235	Heparin-binding.				cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	GATTTTTCAGCTTTGTACTTA	0.363													127	203					0	0	0.014410	0	0
APOB	338	broad.mit.edu	37	2	21230801	21230801	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:21230801G>A	uc002red.2	-	26	9067	c.8939C>T	c.(8938-8940)TCC>TTC	p.S2980F		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	2980					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	AAAGTTGAGGGAGCCAGATTC	0.428													95	356					0	0	0.014410	0	0
APOB	338	broad.mit.edu	37	2	21233505	21233505	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:21233505C>T	uc002red.2	-	26	6363	c.6235G>A	c.(6235-6237)GAA>AAA	p.E2079K		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	2079	Heparin-binding.				cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TCAAAATATTCTTGCAAGGTC	0.343													106	342					0	0	0.014410	0	0
APOB	338	broad.mit.edu	37	2	21234337	21234337	+	Silent	SNP	C	T	T	rs149787297		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:21234337C>T	uc002red.2	-	26	5531	c.5403G>A	c.(5401-5403)CTG>CTA	p.L1801L		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	1801					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity	p.L1801L(1)		ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	CATTGTATTTCAGGTCACTGT	0.403													142	527					0	0	0.014410	0	0
APOB	338	broad.mit.edu	37	2	21245816	21245816	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:21245816C>T	uc002red.2	-	18	2831	c.2703G>A	c.(2701-2703)ATG>ATA	p.M901I		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	901					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	AGTTGGTGTTCATCTGGACCC	0.512													141	237					0	0	0.014410	0	0
APOB	338	broad.mit.edu	37	2	21246531	21246531	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:21246531C>T	uc002red.2	-	17	2598	c.2470G>A	c.(2470-2472)GAC>AAC	p.D824N		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	824					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	AGAAAAAAGTCATTCTTTGAG	0.413													98	158					0	0	0.014410	0	0
ITSN2	50618	broad.mit.edu	37	2	24522854	24522854	+	Missense_Mutation	SNP	T	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:24522854T>A	uc002rfe.2	-	12	1526	c.1268A>T	c.(1267-1269)GAA>GTA	p.E423V	ITSN2_uc002rff.2_Missense_Mutation_p.E423V|ITSN2_uc002rfg.2_Missense_Mutation_p.E423V|ITSN2_uc010eyd.2_Missense_Mutation_p.E448V	NM_006277	NP_006268	Q9NZM3	ITSN2_HUMAN	intersectin 2 isoform 1	423	Potential.				endocytosis|regulation of Rho protein signal transduction	cytoplasm	calcium ion binding|Rho guanyl-nucleotide exchange factor activity|SH3/SH2 adaptor activity			kidney(2)|ovary(1)|central_nervous_system(1)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TAAGCGTTTTTCTAATTCAAG	0.383													13	78					0	0	0.001855	0	0
ASXL2	55252	broad.mit.edu	37	2	25965600	25965600	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:25965600G>A	uc002rgs.2	-	12	3827	c.3606C>T	c.(3604-3606)TCC>TCT	p.S1202S	ASXL2_uc002rgt.1_Silent_p.S685S	NM_018263	NP_060733	Q76L83	ASXL2_HUMAN	additional sex combs like 2	1202					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|protein binding			pancreas(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CAGCACTCTGGGAAACCTGGG	0.493													22	53					0	0	0.012319	0	0
KIF3C	3797	broad.mit.edu	37	2	26151896	26151896	+	Missense_Mutation	SNP	G	A	A	rs13030360		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:26151896G>A	uc002rgu.2	-	8	2990	c.2333C>T	c.(2332-2334)TCC>TTC	p.S778F	KIF3C_uc010eyj.1_RNA|KIF3C_uc010ykr.1_Missense_Mutation_p.S776F	NM_002254	NP_002245	O14782	KIF3C_HUMAN	kinesin family member 3C	778	Globular (Potential).				blood coagulation|microtubule-based movement	cytosol|kinesin complex|microtubule	ATP binding|microtubule motor activity			ovary(3)|skin(1)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					AGAGGCCAGGGAGGCATGTGT	0.607													31	61					0	0	0.005524	0	0
C2orf39	92749	broad.mit.edu	37	2	26676293	26676293	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:26676293G>A	uc002rhg.2	+	14	1869	c.1795G>A	c.(1795-1797)GAA>AAA	p.E599K		NM_145038	NP_659475	Q96MC2	CC164_HUMAN	hypothetical protein LOC92749	599	Glu-rich.										0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					gggagaaaaggaagaaagcct	0.358													15	29					0	0	0.002450	0	0
TCF23	150921	broad.mit.edu	37	2	27373152	27373152	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:27373152C>T	uc010ylg.1	+	2	384	c.384C>T	c.(382-384)CTC>CTT	p.L128L		NM_175769	NP_786951	Q7RTU1	TCF23_HUMAN	transcription factor 23	128	Helix-loop-helix motif.				cell differentiation|muscle organ development|regulation of transcription, DNA-dependent	nucleus					0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TAGCCCACCTCACCCGCACAC	0.657													29	138					0	0	0.008361	0	0
TRIM54	57159	broad.mit.edu	37	2	27528634	27528634	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:27528634G>A	uc002rjo.2	+	5	792	c.792G>A	c.(790-792)GTG>GTA	p.V264V	TRIM54_uc002rjn.2_Silent_p.V306V	NM_187841	NP_912730	Q9BYV2	TRI54_HUMAN	ring finger protein 30 isoform 2	264					cell differentiation|microtubule-based process|multicellular organismal development|negative regulation of microtubule depolymerization	microtubule|sarcomere	signal transducer activity|zinc ion binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CTAAGCTGGTGGAGTCTGCCA	0.527													3	7					0	0	0.000602	0	0
GTF3C2	2976	broad.mit.edu	37	2	27560827	27560827	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:27560827G>A	uc002rjv.1	-	6	1279	c.916C>T	c.(916-918)CCT>TCT	p.P306S	GTF3C2_uc010eyy.1_5'Flank|GTF3C2_uc002rju.1_Missense_Mutation_p.P317S|GTF3C2_uc002rjw.1_Missense_Mutation_p.P306S|GTF3C2_uc010eyz.1_Missense_Mutation_p.P306S	NM_001521	NP_001512	Q8WUA4	TF3C2_HUMAN	general transcription factor IIIC, polypeptide	306						transcription factor TFIIIC complex				ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TTCCAAACAGGAGCCATGATA	0.483													101	165					0	0	0.014410	0	0
EIF2B4	8890	broad.mit.edu	37	2	27591996	27591996	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:27591996C>T	uc002rkb.2	-	4	438	c.295G>A	c.(295-297)GAA>AAA	p.E99K	EIF2B4_uc002rjz.2_Missense_Mutation_p.E119K|EIF2B4_uc002rka.2_Missense_Mutation_p.E84K|EIF2B4_uc002rkc.2_Missense_Mutation_p.E98K|EIF2B4_uc002rkd.2_5'UTR|EIF2B4_uc002rke.2_Missense_Mutation_p.E68K|EIF2B4_uc002rkf.1_Missense_Mutation_p.E68K|SNX17_uc010ylj.1_5'Flank|SNX17_uc002rkg.1_5'Flank|SNX17_uc010ylk.1_5'Flank|SNX17_uc010eza.1_5'Flank|SNX17_uc002rki.1_5'Flank|SNX17_uc002rkh.1_5'Flank|SNX17_uc010yll.1_5'Flank|SNX17_uc010ylm.1_5'Flank|SNX17_uc010yln.1_5'Flank|SNX17_uc010ylo.1_5'Flank|SNX17_uc010ylp.1_5'Flank|SNX17_uc010ylq.1_5'Flank	NM_001034116	NP_001029288	Q9UI10	EI2BD_HUMAN	eukaryotic translation initiation factor 2B,	99					myelination|negative regulation of translational initiation in response to stress|oligodendrocyte development|ovarian follicle development|response to glucose stimulus|response to heat|response to peptide hormone stimulus	cytosol|eukaryotic translation initiation factor 2B complex	translation initiation factor activity|translation initiation factor binding				0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GCCCGAAGTTCGGCCTTACTC	0.572													36	51					0	0	0.006230	0	0
C2orf16	84226	broad.mit.edu	37	2	27799442	27799442	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:27799442G>A	uc002rkz.3	+	1	54	c.3G>A	c.(1-3)ATG>ATA	p.M1I		NM_032266	NP_115642	Q68DN1	CB016_HUMAN	hypothetical protein LOC84226	1										large_intestine(1)	1	Acute lymphoblastic leukemia(172;0.155)					TAAAACCTATGGAGCTGACAC	0.428													6	9					0	0	0.001168	0	0
ZNF512	84450	broad.mit.edu	37	2	27844028	27844028	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:27844028C>T	uc002rla.2	+	14	1491	c.1404C>T	c.(1402-1404)TTC>TTT	p.F468F	ZNF512_uc010ylv.1_Silent_p.F389F|ZNF512_uc010ylw.1_Silent_p.F439F|ZNF512_uc002rlb.2_Silent_p.F389F|ZNF512_uc010ylx.1_Silent_p.F389F|ZNF512_uc002rlc.2_Silent_p.F389F|ZNF512_uc010yly.1_RNA|ZNF512_uc010ylz.1_Silent_p.F361F	NM_032434	NP_115810	Q96ME7	ZN512_HUMAN	zinc finger protein 512	468					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)					AGGACTGGTTCGTTGTAAACC	0.418													22	30					0	0	0.003954	0	0
PLB1	151056	broad.mit.edu	37	2	28849349	28849349	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:28849349G>A	uc002rmb.1	+	51	3634	c.3634G>A	c.(3634-3636)GAC>AAC	p.D1212N	PLB1_uc010ezj.1_Missense_Mutation_p.D1201N|PLB1_uc002rme.1_Missense_Mutation_p.D177N|PLB1_uc002rmf.1_RNA	NM_153021	NP_694566	Q6P1J6	PLB1_HUMAN	phospholipase B1 precursor	1212	4 X 308-326 AA approximate repeats.|Extracellular (Potential).|4.				lipid catabolic process|retinoid metabolic process|steroid metabolic process	apical plasma membrane|integral to membrane	lysophospholipase activity|phospholipase A2 activity|retinyl-palmitate esterase activity			ovary(4)|large_intestine(2)|skin(2)|breast(1)	9	Acute lymphoblastic leukemia(172;0.155)					TGGGGTCAACGACTTGTGTCA	0.547													6	32					0	0	0.001984	0	0
PLB1	151056	broad.mit.edu	37	2	28855815	28855815	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:28855815G>A	uc002rmb.1	+	56	4007	c.4007G>A	c.(4006-4008)GGG>GAG	p.G1336E	PLB1_uc010ezj.1_Missense_Mutation_p.G1325E|PLB1_uc002rme.1_Missense_Mutation_p.G301E|PLB1_uc002rmf.1_RNA	NM_153021	NP_694566	Q6P1J6	PLB1_HUMAN	phospholipase B1 precursor	1336	4 X 308-326 AA approximate repeats.|Extracellular (Potential).|4.				lipid catabolic process|retinoid metabolic process|steroid metabolic process	apical plasma membrane|integral to membrane	lysophospholipase activity|phospholipase A2 activity|retinyl-palmitate esterase activity			ovary(4)|large_intestine(2)|skin(2)|breast(1)	9	Acute lymphoblastic leukemia(172;0.155)					TTGCAGAGAGGGGACACTGAC	0.582													21	48					0	0	0.003330	0	0
FAM179A	165186	broad.mit.edu	37	2	29245121	29245121	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:29245121G>A	uc010ezl.2	+	11	1809	c.1458G>A	c.(1456-1458)TCG>TCA	p.S486S	FAM179A_uc010ymm.1_Silent_p.S431S|FAM179A_uc002rmr.3_Silent_p.S13S	NM_199280	NP_954974	Q6ZUX3	F179A_HUMAN	hypothetical protein LOC165186	486							binding			ovary(3)|skin(1)	4						GGCCTTTCTCGAACCCGGAGC	0.572													21	32					0	0	0.010504	0	0
FAM179A	165186	broad.mit.edu	37	2	29274906	29274906	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:29274906G>A	uc010ezl.2	+	20	3358	c.3007G>A	c.(3007-3009)GTG>ATG	p.V1003M	FAM179A_uc010ymm.1_Missense_Mutation_p.V948M|FAM179A_uc002rmr.3_Missense_Mutation_p.V530M	NM_199280	NP_954974	Q6ZUX3	F179A_HUMAN	hypothetical protein LOC165186	1003							binding			ovary(3)|skin(1)	4						TGACAGAGGGGTGGCCCCTGA	0.502													4	29					0	0	0.000602	0	0
CLIP4	79745	broad.mit.edu	37	2	29397296	29397296	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:29397296G>A	uc002rmv.2	+	15	2020	c.1781G>A	c.(1780-1782)AGA>AAA	p.R594K	CLIP4_uc002rmu.2_Missense_Mutation_p.R594K|CLIP4_uc002rmw.2_RNA	NM_024692	NP_078968	Q8N3C7	CLIP4_HUMAN	CAP-GLY domain containing linker protein family,	594										ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)					ATTAACAGAAGAAATGCTTTT	0.348													23	38					0	0	0.014323	0	0
ALK	238	broad.mit.edu	37	2	29754810	29754810	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:29754810G>A	uc002rmy.2	-	4	2032	c.1125C>T	c.(1123-1125)ATC>ATT	p.I375I		NM_004304	NP_004295	Q9UM73	ALK_HUMAN	anaplastic lymphoma kinase precursor	375	MAM 1.|Extracellular (Potential).				protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity		NPM1/ALK(632)|EML4/ALK(246)|CLTC/ALK(44)|TPM3/ALK(33)|ATIC/ALK(24)|RANBP2/ALK(16)|TPM4/ALK(12)|TFG/ALK(7)|MSN/ALK(6)|CARS/ALK(5)|VCL/ALK(4)|KIF5B/ALK(4)|PPFIBP1/ALK(3)|SEC31A/ALK(3)|SQSTM1/ALK(2)	haematopoietic_and_lymphoid_tissue(726)|lung(262)|autonomic_ganglia(148)|soft_tissue(61)|breast(4)|kidney(4)|large_intestine(3)|skin(3)|ovary(3)|thyroid(2)|central_nervous_system(1)|pancreas(1)	1218	Acute lymphoblastic leukemia(172;0.155)				Adenosine triphosphate(DB00171)	GCATCAGGAGGATCTCTCTTG	0.532			T|Mis|A	NPM1|TPM3|TFG|TPM4|ATIC|CLTC|MSN|ALO17|CARS|EML4	ALCL|NSCLC|Neuroblastoma	neuroblastoma			Neuroblastoma_Familial_Clustering_of|Congenital_Central_Hypoventilation_Syndrome				14	37					0	0	0.002450	0	0
CAPN13	92291	broad.mit.edu	37	2	30966371	30966371	+	Silent	SNP	G	A	A	rs140029412	by1000genomes	TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:30966371G>A	uc002rnn.2	-	12	1499	c.1323C>T	c.(1321-1323)TTC>TTT	p.F441F	CAPN13_uc002rnm.2_RNA|CAPN13_uc002rno.2_5'UTR	NM_144575	NP_653176	Q6MZZ7	CAN13_HUMAN	calpain 13	441					proteolysis	intracellular	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity			large_intestine(1)|ovary(1)	2	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.155)					AGTTGCGGCGGAATTTATTAT	0.458													29	109					0	0	0.006320	0	0
CAPN13	92291	broad.mit.edu	37	2	30976012	30976012	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:30976012C>T	uc002rnn.2	-	10	1170	c.994G>A	c.(994-996)GAA>AAA	p.E332K	CAPN13_uc002rnp.1_Missense_Mutation_p.E332K	NM_144575	NP_653176	Q6MZZ7	CAN13_HUMAN	calpain 13	332	Calpain catalytic.				proteolysis	intracellular	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity			large_intestine(1)|ovary(1)	2	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.155)					ATTGGAATTTCGCTACATATA	0.423													22	115					0	0	0.003954	0	0
GALNT14	79623	broad.mit.edu	37	2	31189143	31189143	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:31189143C>T	uc002rnr.2	-	3	944	c.325G>A	c.(325-327)GAC>AAC	p.D109N	GALNT14_uc002rnq.2_Missense_Mutation_p.D89N|GALNT14_uc002rns.2_Missense_Mutation_p.D114N|GALNT14_uc010ymr.1_Missense_Mutation_p.D74N|GALNT14_uc010ezo.1_Intron|GALNT14_uc010ezp.1_Missense_Mutation_p.D80N	NM_024572	NP_078848	Q96FL9	GLT14_HUMAN	N-acetylgalactosaminyltransferase 14	109	Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			upper_aerodigestive_tract(2)|skin(1)	3	Acute lymphoblastic leukemia(172;0.155)					GGTGGAAGGTCCGTGCAATAC	0.512													9	24					0	0	0.004482	0	0
EHD3	30845	broad.mit.edu	37	2	31483545	31483545	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:31483545C>T	uc002rnu.2	+	4	1280	c.672C>T	c.(670-672)ATC>ATT	p.I224I	EHD3_uc010ymt.1_Intron	NM_014600	NP_055415	Q9NZN3	EHD3_HUMAN	EH-domain containing 3	224	Potential.				blood coagulation|endocytic recycling|protein homooligomerization	nucleus|plasma membrane|recycling endosome membrane	ATP binding|calcium ion binding|GTP binding|GTPase activity|nucleic acid binding|protein binding			skin(2)	2	Acute lymphoblastic leukemia(172;0.155)					CTGACCAGATCGAGACGCAGC	0.552													11	19					0	0	0.010729	0	0
XDH	7498	broad.mit.edu	37	2	31595189	31595189	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:31595189G>A	uc002rnv.1	-	17	1840	c.1761C>T	c.(1759-1761)GCC>GCT	p.A587A		NM_000379	NP_000370	P47989	XDH_HUMAN	xanthine dehydrogenase	587					purine nucleotide catabolic process|xanthine catabolic process	cytosol|extracellular region|peroxisome	2 iron, 2 sulfur cluster binding|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|molybdopterin cofactor binding|protein homodimerization activity|xanthine dehydrogenase activity|xanthine oxidase activity			skin(4)|breast(2)|ovary(1)|central_nervous_system(1)	8	Acute lymphoblastic leukemia(172;0.155)				Allopurinol(DB00437)|Carvedilol(DB01136)|Daunorubicin(DB00694)|Deferoxamine(DB00746)|Desflurane(DB01189)|Menadione(DB00170)|Mercaptopurine(DB01033)|Methotrexate(DB00563)|NADH(DB00157)|Nitrofurazone(DB00336)|Papaverine(DB01113)|Procarbazine(DB01168)|Pyrazinamide(DB00339)|Rasburicase(DB00049)|Spermine(DB00127)|Trifluoperazine(DB00831)|Vitamin E(DB00163)	CCTCACCAGAGGCCTGCATGT	0.627													42	155					0	0	0.013114	0	0
XDH	7498	broad.mit.edu	37	2	31596751	31596751	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:31596751G>A	uc002rnv.1	-	16	1753	c.1674C>T	c.(1672-1674)GTC>GTT	p.V558V		NM_000379	NP_000370	P47989	XDH_HUMAN	xanthine dehydrogenase	558					purine nucleotide catabolic process|xanthine catabolic process	cytosol|extracellular region|peroxisome	2 iron, 2 sulfur cluster binding|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|molybdopterin cofactor binding|protein homodimerization activity|xanthine dehydrogenase activity|xanthine oxidase activity			skin(4)|breast(2)|ovary(1)|central_nervous_system(1)	8	Acute lymphoblastic leukemia(172;0.155)				Allopurinol(DB00437)|Carvedilol(DB01136)|Daunorubicin(DB00694)|Deferoxamine(DB00746)|Desflurane(DB01189)|Menadione(DB00170)|Mercaptopurine(DB01033)|Methotrexate(DB00563)|NADH(DB00157)|Nitrofurazone(DB00336)|Papaverine(DB01113)|Procarbazine(DB01168)|Pyrazinamide(DB00339)|Rasburicase(DB00049)|Spermine(DB00127)|Trifluoperazine(DB00831)|Vitamin E(DB00163)	GGAAGAGCTGGACATCGGCTG	0.502													5	19					0	0	0.001168	0	0
XDH	7498	broad.mit.edu	37	2	31600069	31600069	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:31600069C>T	uc002rnv.1	-	14	1356	c.1277G>A	c.(1276-1278)CGG>CAG	p.R426Q		NM_000379	NP_000370	P47989	XDH_HUMAN	xanthine dehydrogenase	426					purine nucleotide catabolic process|xanthine catabolic process	cytosol|extracellular region|peroxisome	2 iron, 2 sulfur cluster binding|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|molybdopterin cofactor binding|protein homodimerization activity|xanthine dehydrogenase activity|xanthine oxidase activity			skin(4)|breast(2)|ovary(1)|central_nervous_system(1)	8	Acute lymphoblastic leukemia(172;0.155)				Allopurinol(DB00437)|Carvedilol(DB01136)|Daunorubicin(DB00694)|Deferoxamine(DB00746)|Desflurane(DB01189)|Menadione(DB00170)|Mercaptopurine(DB01033)|Methotrexate(DB00563)|NADH(DB00157)|Nitrofurazone(DB00336)|Papaverine(DB01113)|Procarbazine(DB01168)|Pyrazinamide(DB00339)|Rasburicase(DB00049)|Spermine(DB00127)|Trifluoperazine(DB00831)|Vitamin E(DB00163)	ATCTTCTCTCCGGGAGGCCTG	0.512													17	51					0	0	0.008871	0	0
NLRC4	58484	broad.mit.edu	37	2	32474890	32474890	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:32474890C>T	uc002roi.2	-	4	2289	c.2043G>A	c.(2041-2043)GGG>GGA	p.G681G	NLRC4_uc002roj.1_Silent_p.G681G|NLRC4_uc010ezt.1_Intron	NM_021209	NP_067032	Q9NPP4	NLRC4_HUMAN	caspase recruitment domain protein 12	681					activation of caspase activity|defense response to bacterium|detection of bacterium|interleukin-1 beta secretion|positive regulation of apoptosis	cytoplasm	ATP binding|magnesium ion binding|protein homodimerization activity			ovary(3)|large_intestine(1)|lung(1)|skin(1)	6	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.208)					TGAATATTTTCCCCAGATATC	0.458													21	65					0	0	0.008871	0	0
NLRC4	58484	broad.mit.edu	37	2	32476179	32476179	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:32476179C>T	uc002roi.2	-	4	1000	c.754G>A	c.(754-756)GAA>AAA	p.E252K	NLRC4_uc002roj.1_Missense_Mutation_p.E252K|NLRC4_uc010ezt.1_Intron	NM_021209	NP_067032	Q9NPP4	NLRC4_HUMAN	caspase recruitment domain protein 12	252	NACHT.				activation of caspase activity|defense response to bacterium|detection of bacterium|interleukin-1 beta secretion|positive regulation of apoptosis	cytoplasm	ATP binding|magnesium ion binding|protein homodimerization activity			ovary(3)|large_intestine(1)|lung(1)|skin(1)	6	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.208)					GGCTTGAATTCATTGTAGCCA	0.498													37	68					0	0	0.006999	0	0
BIRC6	57448	broad.mit.edu	37	2	32726811	32726811	+	Missense_Mutation	SNP	A	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:32726811A>T	uc010ezu.2	+	47	9197	c.9063A>T	c.(9061-9063)GAA>GAT	p.E3021D		NM_016252	NP_057336	Q9NR09	BIRC6_HUMAN	baculoviral IAP repeat-containing 6	3021					anti-apoptosis|apoptosis	intracellular	acid-amino acid ligase activity|cysteine-type endopeptidase inhibitor activity|protein binding			ovary(5)|skin(4)|lung(2)|central_nervous_system(1)|breast(1)|pancreas(1)	14	Acute lymphoblastic leukemia(172;0.155)					CTAAACATGAAAACTTTCATG	0.313													11	54					0	0	0.013537	0	0
LTBP1	4052	broad.mit.edu	37	2	33540282	33540282	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:33540282C>T	uc002ros.2	+	24	3679	c.3679C>T	c.(3679-3681)CAT>TAT	p.H1227Y	LTBP1_uc002rot.2_Missense_Mutation_p.H901Y|LTBP1_uc002rou.2_Missense_Mutation_p.H900Y|LTBP1_uc002rov.2_Missense_Mutation_p.H847Y|LTBP1_uc010ymz.1_Missense_Mutation_p.H900Y|LTBP1_uc010yna.1_Missense_Mutation_p.H847Y|LTBP1_uc010ynb.1_Missense_Mutation_p.H166Y	NM_206943	NP_996826	Q14766	LTBP1_HUMAN	latent transforming growth factor beta binding	1226	EGF-like 12; calcium-binding (Potential).				negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta	proteinaceous extracellular matrix	calcium ion binding|growth factor binding|transforming growth factor beta receptor activity			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|central_nervous_system(1)	8	all_hematologic(175;0.115)	Medulloblastoma(90;0.215)				GGGTTCTTTCCATTGTGTCTG	0.413													14	29					0	0	0.004990	0	0
VIT	5212	broad.mit.edu	37	2	36982190	36982190	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:36982190C>T	uc002rpl.2	+	5	623	c.402C>T	c.(400-402)ATC>ATT	p.I134I	VIT_uc002rpk.2_Silent_p.I127I|VIT_uc010ynf.1_Silent_p.I127I|VIT_uc002rpm.2_Silent_p.I127I|VIT_uc010ezv.2_Silent_p.I127I|VIT_uc010ezw.2_Silent_p.I127I	NM_053276	NP_444506	Q6UXI7	VITRN_HUMAN	vitrin	134						proteinaceous extracellular matrix				ovary(1)|pancreas(1)	2		all_hematologic(82;0.248)				AATCCTTTATCGTCTTAGGTA	0.443													7	32					0	0	0.001984	0	0
SULT6B1	391365	broad.mit.edu	37	2	37395156	37395156	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:37395156C>T	uc002rpu.2	-	7	741	c.720G>A	c.(718-720)ATG>ATA	p.M240I	SULT6B1_uc010yni.1_RNA	NM_001032377	NP_001027549	Q6IMI4	ST6B1_HUMAN	sulfotransferase family, cytosolic, 6B, member	278						cytoplasm	sulfotransferase activity			ovary(1)|breast(1)|central_nervous_system(1)	3		all_hematologic(82;0.248)				ATTTTTCATCCATTTCCTGGT	0.398													14	45					0	0	0.002450	0	0
DHX57	90957	broad.mit.edu	37	2	39088456	39088456	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:39088456G>A	uc002rrf.2	-	5	1195	c.1096C>T	c.(1096-1098)CCC>TCC	p.P366S	DHX57_uc002rre.2_5'UTR|DHX57_uc002rrg.2_Missense_Mutation_p.P366S	NM_198963	NP_945314	Q6P158	DHX57_HUMAN	DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57	366							ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding|zinc ion binding			ovary(1)|lung(1)|skin(1)	3		all_hematologic(82;0.248)				GCTTGGTAGGGATATTTGTGG	0.363													5	25					0	0	0.000602	0	0
SOS1	6654	broad.mit.edu	37	2	39222341	39222341	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:39222341G>A	uc002rrk.3	-	20	3310	c.3269C>T	c.(3268-3270)CCG>CTG	p.P1090L	SOS1_uc002rrj.3_Missense_Mutation_p.P704L	NM_005633	NP_005624	Q07889	SOS1_HUMAN	son of sevenless homolog 1	1090					apoptosis|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|induction of apoptosis by extracellular signals|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	cytosol	DNA binding|protein binding|Rho GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			ovary(4)|breast(3)|lung(2)|central_nervous_system(1)	10		all_hematologic(82;0.21)				AGAAGCAGGCGGAGGTGTTAA	0.443									Noonan_syndrome				28	35					0	0	0.008361	0	0
SOS1	6654	broad.mit.edu	37	2	39222477	39222477	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:39222477G>A	uc002rrk.3	-	20	3174	c.3133C>T	c.(3133-3135)CCA>TCA	p.P1045S	SOS1_uc002rrj.3_Missense_Mutation_p.P659S	NM_005633	NP_005624	Q07889	SOS1_HUMAN	son of sevenless homolog 1	1045					apoptosis|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|induction of apoptosis by extracellular signals|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	cytosol	DNA binding|protein binding|Rho GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			ovary(4)|breast(3)|lung(2)|central_nervous_system(1)	10		all_hematologic(82;0.21)				CCTGGTCTTGGGTTTGATGGA	0.408									Noonan_syndrome				29	55					0	0	0.010818	0	0
THADA	63892	broad.mit.edu	37	2	43625251	43625251	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:43625251G>A	uc002rsw.3	-	29	4438	c.4086C>T	c.(4084-4086)TCC>TCT	p.S1362S	THADA_uc010far.2_Silent_p.S557S|THADA_uc002rsx.3_Silent_p.S1362S|THADA_uc002rsy.3_RNA|THADA_uc010fas.1_RNA|THADA_uc002rsz.2_Silent_p.S1071S|THADA_uc010fat.1_Silent_p.S509S	NM_001083953	NP_001077422	Q6YHU6	THADA_HUMAN	thyroid adenoma associated	1362							binding			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(82;0.00361)|all_hematologic(82;0.00837)				CCATTTCACGGGAGTGGTAGA	0.453													64	238					0	0	0.014410	0	0
SIX2	10736	broad.mit.edu	37	2	45235712	45235713	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:45235712_45235713GG>AA	uc002ruo.2	-	1	830_831	c.537_538CC>TT	c.(535-540)GACCGG>GATTGG	p.R180W	SIX2_uc002rup.2_Missense_Mutation_p.R180W	NM_016932	NP_058628	Q9NPC8	SIX2_HUMAN	SIX homeobox 2	180	Homeobox.					nucleus	sequence-specific DNA binding transcription factor activity			pancreas(1)	1		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)				TCGGCCGCCCGGTCGCGCTGCC	0.683													27	55					0	0	0.004672	0	0
STON1-GTF2A1L	286749	broad.mit.edu	37	2	48818932	48818932	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:48818932G>A	uc010yol.1	+	2	2118	c.2071G>A	c.(2071-2073)GGA>AGA	p.G691R	STON1_uc002rwo.3_Missense_Mutation_p.G691R|STON1_uc010fbm.2_Missense_Mutation_p.G691R|STON1-GTF2A1L_uc002rwp.1_Missense_Mutation_p.G691R|STON1_uc002rwr.2_RNA|STON1_uc002rwq.2_Missense_Mutation_p.G691R	NM_006873	NP_006864	B7ZL16	B7ZL16_HUMAN	stonin 1	691					endocytosis|intracellular protein transport|transcription initiation from RNA polymerase II promoter	clathrin adaptor complex|transcription factor TFIIA complex				ovary(3)|pancreas(1)|skin(1)	5		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.176)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)			CAGGTCTCTGGGAGTGGAGAG	0.488													31	25					0	0	0.008361	0	0
LHCGR	3973	broad.mit.edu	37	2	48915500	48915500	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:48915500C>T	uc002rwu.3	-	11	1506	c.1436G>A	c.(1435-1437)CGA>CAA	p.R479Q	GTF2A1L_uc002rwt.2_Intron	NM_000233	NP_000224	P22888	LSHR_HUMAN	luteinizing hormone/choriogonadotropin receptor	479	Cytoplasmic (Potential).				male genitalia development|male gonad development	endosome|integral to plasma membrane	luteinizing hormone receptor activity			ovary(3)|lung(2)|breast(2)|skin(1)	8		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.176)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)		Cetrorelix(DB00050)|Choriogonadotropin alfa(DB00097)|Goserelin(DB00014)|Lutropin alfa(DB00044)|Menotropins(DB00032)	ATGTCTTAATCGCAGCTTTTG	0.448									Familial_Male-Limited_Precocious_Puberty				6	45					0	0	0.001168	0	0
LHCGR	3973	broad.mit.edu	37	2	48915774	48915774	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:48915774G>A	uc002rwu.3	-	11	1232	c.1162C>T	c.(1162-1164)CGT>TGT	p.R388C	GTF2A1L_uc002rwt.2_Intron	NM_000233	NP_000224	P22888	LSHR_HUMAN	luteinizing hormone/choriogonadotropin receptor	388	Cytoplasmic (Potential).				male genitalia development|male gonad development	endosome|integral to plasma membrane	luteinizing hormone receptor activity			ovary(3)|lung(2)|breast(2)|skin(1)	8		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.176)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)		Cetrorelix(DB00050)|Choriogonadotropin alfa(DB00097)|Goserelin(DB00014)|Lutropin alfa(DB00044)|Menotropins(DB00032)	AGTTTGTAACGACTTGTCAGG	0.428									Familial_Male-Limited_Precocious_Puberty				21	35					0	0	0.010504	0	0
FSHR	2492	broad.mit.edu	37	2	49190763	49190763	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:49190763G>A	uc002rww.2	-	10	1271	c.1197C>T	c.(1195-1197)TTC>TTT	p.F399F	FSHR_uc002rwx.2_Silent_p.F337F|FSHR_uc010fbn.2_Silent_p.F373F	NM_000145	NP_000136	P23945	FSHR_HUMAN	follicle stimulating hormone receptor isoform 1	399	Helical; Name=2; (Potential).				female gamete generation|male gonad development|spermatogenesis	integral to membrane|plasma membrane	follicle-stimulating hormone receptor activity|protein binding			ovary(4)|lung(2)|central_nervous_system(1)|skin(1)	8		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.181)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)		Choriogonadotropin alfa(DB00097)|Follitropin beta(DB00066)|Menotropins(DB00032)|Urofollitropin(DB00094)	TGCACATAAGGAACCTGGGGA	0.453									Gonadal_Dysgenesis_46_XX				20	32					0	0	0.012319	0	0
NRXN1	9378	broad.mit.edu	37	2	51254720	51254720	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:51254720C>T	uc010fbq.2	-	2	2169	c.692G>A	c.(691-693)GGA>GAA	p.G231E	NRXN1_uc002rxe.3_Missense_Mutation_p.G231E|NRXN1_uc002rxd.1_Missense_Mutation_p.G231E	NM_001135659	NP_001129131	P58400	NRX1B_HUMAN	neurexin 1 isoform alpha2 precursor	Error:Variant_position_missing_in_P58400_after_alignment					angiogenesis|neuron cell-cell adhesion|neuronal signal transduction	cell surface|endocytic vesicle|integral to membrane|presynaptic membrane	cell adhesion molecule binding|receptor binding			ovary(2)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.192)	Lung(47;0.0813)|LUSC - Lung squamous cell carcinoma(58;0.116)			GCACACACCTCCGTTGAGGCA	0.716													16	6					0	0	0.006122	0	0
SPTBN1	6711	broad.mit.edu	37	2	54858619	54858619	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:54858619G>A	uc002rxu.2	+	16	3684	c.3435G>A	c.(3433-3435)CAG>CAA	p.Q1145Q	SPTBN1_uc002rxx.2_Silent_p.Q1132Q	NM_003128	NP_003119	Q01082	SPTB2_HUMAN	spectrin, beta, non-erythrocytic 1 isoform 1	1145	Spectrin 9.				actin filament capping|axon guidance	cytosol|nucleolus|plasma membrane|sarcomere|spectrin	actin binding|calmodulin binding|protein binding|structural constituent of cytoskeleton			ovary(3)|breast(2)|central_nervous_system(2)|skin(1)	8			Lung(47;0.24)			AGCGGCTGCAGGCCCTGGACA	0.562													15	79					0	0	0.003163	0	0
EFEMP1	2202	broad.mit.edu	37	2	56097878	56097878	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:56097878C>T	uc002rzh.2	-	10	1627	c.1297G>A	c.(1297-1299)GAA>AAA	p.E433K	EFEMP1_uc002rzi.2_Missense_Mutation_p.E433K|EFEMP1_uc002rzj.2_Missense_Mutation_p.E433K|EFEMP1_uc010ypc.1_Missense_Mutation_p.E295K	NM_004105	NP_004096	Q12805	FBLN3_HUMAN	EGF-containing fibulin-like extracellular matrix	433	Mediates interaction with TIMP3.				negative regulation of chondrocyte differentiation|peptidyl-tyrosine phosphorylation|regulation of transcription, DNA-dependent|visual perception	extracellular space|proteinaceous extracellular matrix	calcium ion binding|epidermal growth factor receptor activity|epidermal growth factor receptor binding|growth factor activity			ovary(4)|pancreas(1)|skin(1)	6			LUSC - Lung squamous cell carcinoma(58;0.127)|Lung(47;0.132)			TCTCCATTTTCATTTCCAGAT	0.353													13	31					0	0	0.002450	0	0
EFEMP1	2202	broad.mit.edu	37	2	56104905	56104905	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:56104905C>T	uc002rzh.2	-	6	1066	c.736G>A	c.(736-738)GCA>ACA	p.A246T	EFEMP1_uc002rzi.2_Missense_Mutation_p.A246T|EFEMP1_uc002rzj.2_Missense_Mutation_p.A246T|EFEMP1_uc010ypc.1_Intron	NM_004105	NP_004096	Q12805	FBLN3_HUMAN	EGF-containing fibulin-like extracellular matrix	246	EGF-like 3; calcium-binding (Potential).				negative regulation of chondrocyte differentiation|peptidyl-tyrosine phosphorylation|regulation of transcription, DNA-dependent|visual perception	extracellular space|proteinaceous extracellular matrix	calcium ion binding|epidermal growth factor receptor activity|epidermal growth factor receptor binding|growth factor activity			ovary(4)|pancreas(1)|skin(1)	6			LUSC - Lung squamous cell carcinoma(58;0.127)|Lung(47;0.132)			TTGTTTGCTGCCAATTGAAAC	0.438													15	48					0	0	0.002450	0	0
CCDC85A	114800	broad.mit.edu	37	2	56420143	56420143	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:56420143C>T	uc002rzn.2	+	2	1310	c.808C>T	c.(808-810)CGC>TGC	p.R270C		NM_001080433	NP_001073902	Q96PX6	CC85A_HUMAN	coiled-coil domain containing 85A	270	His-rich.									breast(3)|ovary(2)	5			LUSC - Lung squamous cell carcinoma(58;0.127)|Lung(47;0.132)			AACCCCAGATCGCCCCAAAGC	0.657													8	30					0	0	0.003080	0	0
BCL11A	53335	broad.mit.edu	37	2	60688386	60688386	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:60688386G>A	uc002sae.1	-	4	1889	c.1661C>T	c.(1660-1662)TCC>TTC	p.S554F	BCL11A_uc002sab.2_Missense_Mutation_p.S554F|BCL11A_uc002sac.2_Intron|BCL11A_uc010ypi.1_Missense_Mutation_p.S223F|BCL11A_uc010ypj.1_Missense_Mutation_p.S520F|BCL11A_uc002sad.1_Missense_Mutation_p.S402F|BCL11A_uc002saf.1_Missense_Mutation_p.S520F	NM_022893	NP_075044	Q9H165	BC11A_HUMAN	B-cell CLL/lymphoma 11A isoform 1	554					negative regulation of axon extension|negative regulation of collateral sprouting|negative regulation of dendrite development|positive regulation of collateral sprouting|positive regulation of neuron projection development|positive regulation of transcription from RNA polymerase II promoter|protein sumoylation|regulation of dendrite development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|cytoplasm|nucleus|nucleus	nucleic acid binding|protein heterodimerization activity|protein homodimerization activity|zinc ion binding	p.S554F(1)		central_nervous_system(6)|breast(3)|ovary(2)|skin(2)	13			LUSC - Lung squamous cell carcinoma(5;9.29e-08)|Lung(5;1.34e-06)|Epithelial(17;0.0562)|all cancers(80;0.199)			GTGCTGCATGGAGCTGAGCAC	0.706			T	IGH@	B-CLL								35	128					0	0	0.007835	0	0
LOC388955	388955	broad.mit.edu	37	2	63849827	63849827	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:63849827C>T	uc002sck.1	-	1	333	c.139G>A	c.(139-141)GAC>AAC	p.D47N		NR_003131				SubName: Full=Px19-like protein, isoform CRA_c; SubName: Full=cDNA, FLJ92457, Homo sapiens px19-like protein (PX19), mRNA;												0						AGTTTCTGGTCAGGGGTCACC	0.552													7	13					0	0	0.003080	0	0
SLC1A4	6509	broad.mit.edu	37	2	65217269	65217269	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:65217269C>T	uc010yqa.1	+	1	814	c.492C>T	c.(490-492)CCC>CCT	p.P164P	SLC1A4_uc010ypy.1_Intron|SLC1A4_uc010ypz.1_Intron|SLC1A4_uc010fcv.2_Silent_p.P164P	NM_003038	NP_003029	P43007	SATT_HUMAN	solute carrier family 1, member 4 isoform 1	164	Extracellular (Potential).				cellular nitrogen compound metabolic process|cognition|synaptic transmission, glutamatergic	intermediate filament|melanosome	chloride channel activity|L-alanine transmembrane transporter activity|L-cystine transmembrane transporter activity|L-hydroxyproline transmembrane transporter activity|L-proline transmembrane transporter activity|L-serine transmembrane transporter activity|L-threonine transmembrane transporter activity|sodium:dicarboxylate symporter activity			pancreas(1)	1					L-Alanine(DB00160)	CTCCTGTCCCCAAAGAGACGG	0.637													5	13					0	0	0.001168	0	0
BMP10	27302	broad.mit.edu	37	2	69093240	69093240	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:69093240C>T	uc002sez.1	-	2	957	c.798G>A	c.(796-798)AGG>AGA	p.R266R		NM_014482	NP_055297	O95393	BMP10_HUMAN	bone morphogenetic protein 10 preproprotein	266					activin receptor signaling pathway|adult heart development|atrial cardiac muscle tissue morphogenesis|BMP signaling pathway|cardiac muscle cell proliferation|heart trabecula formation|negative regulation of cardiac muscle hypertrophy|negative regulation of cell growth|negative regulation of endothelial cell migration|Notch signaling pathway|pathway-restricted SMAD protein phosphorylation|positive regulation of cardiac muscle cell proliferation|positive regulation of cardiac muscle hypertrophy|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of transcription, DNA-dependent|sarcomere organization|ventricular cardiac muscle cell development|ventricular cardiac muscle tissue morphogenesis	cell surface|extracellular space|Z disc	cytokine activity|growth factor activity|receptor serine/threonine kinase binding			ovary(2)	2						GTTCCTCCTTCCTCTCCTTGT	0.483													22	31					0	0	0.010504	0	0
GKN2	200504	broad.mit.edu	37	2	69173445	69173445	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:69173445C>T	uc002sfa.2	-	5	572	c.463G>A	c.(463-465)GAA>AAA	p.E155K	GKN2_uc002sfb.3_Missense_Mutation_p.E155K	NM_182536	NP_872342	Q86XP6	GKN2_HUMAN	trefoil factor interactions(z) 1 precursor	155						extracellular region					0						CGTGTGTTTTCAACCACTTCC	0.289													31	71					0	0	0.009535	0	0
GKN2	200504	broad.mit.edu	37	2	69173457	69173457	+	Missense_Mutation	SNP	C	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:69173457C>A	uc002sfa.2	-	5	560	c.451G>T	c.(451-453)GGG>TGG	p.G151W	GKN2_uc002sfb.3_Missense_Mutation_p.G151W	NM_182536	NP_872342	Q86XP6	GKN2_HUMAN	trefoil factor interactions(z) 1 precursor	151	BRICHOS.					extracellular region					0						ACCACTTCCCCCTTATACAAA	0.313													34	78					2.04263e-09	2.19714e-09	0.004289	1	0
GKN1	56287	broad.mit.edu	37	2	69201798	69201798	+	Missense_Mutation	SNP	C	T	T	rs141746794		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:69201798C>T	uc002sfc.2	+	1	94	c.31C>T	c.(31-33)CGT>TGT	p.R11C		NM_019617	NP_062563	Q9NS71	GKN1_HUMAN	18 kDa antrum mucosa protein precursor	11					digestion|positive regulation of cell division	extracellular region				breast(1)	1						CCACTGCTTTCGTGAAGACAA	0.413													16	38					0	0	0.007413	0	0
ASPRV1	151516	broad.mit.edu	37	2	70188488	70188488	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:70188488G>A	uc002sfz.3	-	1	910	c.333C>T	c.(331-333)GTC>GTT	p.V111V		NM_152792	NP_690005	Q53RT3	APRV1_HUMAN	aspartic peptidase, retroviral-like 1 precursor	111	Extracellular (Potential).				protein maturation by peptide bond cleavage|skin development		aspartic-type endopeptidase activity			ovary(1)	1						GGTTTGGGACGACATTGGCCC	0.572													24	39					0	0	0.005443	0	0
TGFA	7039	broad.mit.edu	37	2	70742001	70742001	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:70742001G>A	uc002sgs.3	-	2	290	c.84C>T	c.(82-84)TCC>TCT	p.S28S	TGFA_uc010fdq.2_Silent_p.S34S|TGFA_uc010fdr.2_Silent_p.S34S|TGFA_uc002sgt.3_Silent_p.S28S|TGFA_uc002sgu.2_Silent_p.S28S|TGFA_uc002sgv.2_Silent_p.S28S|TGFA_uc002sgw.2_Silent_p.S28S	NM_003236	NP_003227	P01135	TGFA_HUMAN	transforming growth factor, alpha isoform 1	28	Extracellular (Potential).				activation of MAPK activity|cell proliferation|positive regulation of cell division|positive regulation of epidermal growth factor receptor activity|positive regulation of epithelial cell proliferation|positive regulation of mitosis	cell surface|extracellular space|integral to membrane|plasma membrane	epidermal growth factor receptor binding|growth factor activity|MAP kinase kinase activity|signal transducer activity			prostate(1)	1						CACTCAGCGGGGACGTGCTGT	0.607													7	24					0	0	0.003080	0	0
ADD2	119	broad.mit.edu	37	2	70901819	70901819	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:70901819C>T	uc002sgz.2	-	14	2197	c.1732G>A	c.(1732-1734)GAA>AAA	p.E578K	ADD2_uc010fds.1_RNA|ADD2_uc002sgy.2_Missense_Mutation_p.E578K|ADD2_uc002sha.2_Missense_Mutation_p.E272K|ADD2_uc002sgx.2_Missense_Mutation_p.E578K|ADD2_uc010fdt.1_Missense_Mutation_p.E578K	NM_001617	NP_001608	P35612	ADDB_HUMAN	adducin 2 isoform a	578					actin filament bundle assembly|barbed-end actin filament capping|positive regulation of protein binding	cytoplasm|F-actin capping protein complex|plasma membrane	actin filament binding|calmodulin binding|metal ion binding|protein heterodimerization activity|protein homodimerization activity|spectrin binding			ovary(2)|pancreas(1)	3						CCATCAAGTTCTAGTTTCTTC	0.542													11	51					0	0	0.013537	0	0
CD207	50489	broad.mit.edu	37	2	71061125	71061125	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:71061125C>T	uc002shg.2	-	3	264	c.217G>A	c.(217-219)GAT>AAT	p.D73N		NM_015717	NP_056532	Q9UJ71	CLC4K_HUMAN	CD207 antigen, langerin	73	Extracellular (Potential).				defense response to virus	endocytic vesicle|integral to membrane	mannose binding			ovary(1)|lung(1)	2						GTCTTTACATCTGATATGGTG	0.512													7	9					0	0	0.001984	0	0
ZNF638	27332	broad.mit.edu	37	2	71650425	71650425	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:71650425G>A	uc002shx.2	+	22	4100	c.3781G>A	c.(3781-3783)GCT>ACT	p.A1261T	ZNF638_uc010yqw.1_Missense_Mutation_p.A840T|ZNF638_uc002shy.2_Missense_Mutation_p.A1261T|ZNF638_uc002shz.2_Missense_Mutation_p.A1261T|ZNF638_uc002sia.2_Missense_Mutation_p.A1261T|ZNF638_uc002sib.1_Intron|ZNF638_uc010fed.2_Intron|ZNF638_uc002sic.2_Missense_Mutation_p.A358T|ZNF638_uc002sid.2_Intron	NM_014497	NP_055312	Q14966	ZN638_HUMAN	zinc finger protein 638	1261	Glu-rich.				RNA splicing	cytoplasm|nuclear speck	double-stranded DNA binding|nucleotide binding|RNA binding|zinc ion binding			pancreas(2)|ovary(1)|skin(1)	4						TATGGTAGAAGCTGTAGCTGA	0.393													11	38					0	0	0.001855	0	0
DYSF	8291	broad.mit.edu	37	2	71741043	71741043	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:71741043G>A	uc002sie.2	+	6	1031	c.655G>A	c.(655-657)GAT>AAT	p.D219N	DYSF_uc010feg.2_Missense_Mutation_p.D250N|DYSF_uc010feh.2_Missense_Mutation_p.D219N|DYSF_uc002sig.3_Missense_Mutation_p.D219N|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Missense_Mutation_p.D219N|DYSF_uc010fef.2_Missense_Mutation_p.D250N|DYSF_uc010fei.2_Missense_Mutation_p.D250N|DYSF_uc010fek.2_Missense_Mutation_p.D251N|DYSF_uc010fej.2_Missense_Mutation_p.D220N|DYSF_uc010fel.2_Missense_Mutation_p.D220N|DYSF_uc010feo.2_Missense_Mutation_p.D251N|DYSF_uc010fem.2_Missense_Mutation_p.D220N|DYSF_uc010fen.2_Missense_Mutation_p.D251N|DYSF_uc002sif.2_Missense_Mutation_p.D220N	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	219	Cytoplasmic (Potential).|C2 2.					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						CAAACCGCAGGATTTCCAGGT	0.572													7	16					0	0	0.004482	0	0
RAB11FIP5	26056	broad.mit.edu	37	2	73315857	73315857	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:73315857G>A	uc002siu.3	-	3	1130	c.889C>T	c.(889-891)CCC>TCC	p.P297S	RAB11FIP5_uc002sit.3_Missense_Mutation_p.P219S	NM_015470	NP_056285	Q9BXF6	RFIP5_HUMAN	RAB11 family interacting protein 5 (class I)	297					protein transport	mitochondrial outer membrane|recycling endosome membrane	gamma-tubulin binding				0						AACAGCTTGGGGGACTGTGCA	0.612													10	5					0	0	0.006214	0	0
FBXO41	150726	broad.mit.edu	37	2	73490898	73490898	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:73490898G>A	uc002sjb.1	-	8	2166	c.2166C>T	c.(2164-2166)ATC>ATT	p.I722I		NM_001080410	NP_001073879	Q8TF61	FBX41_HUMAN	F-box protein 41	661						intracellular	protein binding|zinc ion binding			breast(2)|pancreas(1)	3						AGATGCGCAGGATCAGCAGGT	0.642													23	46					0	0	0.003330	0	0
C2orf78	388960	broad.mit.edu	37	2	74043271	74043271	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:74043271G>A	uc002sjr.1	+	3	2042	c.1921G>A	c.(1921-1923)GGG>AGG	p.G641R		NM_001080474	NP_001073943	A6NCI8	CB078_HUMAN	hypothetical protein LOC388960	641										ovary(2)	2						CCATGCACTCGGGAAAAAGAT	0.493													24	38					0	0	0.003954	0	0
DCTN1	1639	broad.mit.edu	37	2	74598741	74598741	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:74598741G>A	uc002skx.2	-	8	879	c.568C>T	c.(568-570)CCG>TCG	p.P190S	DCTN1_uc002skv.2_Missense_Mutation_p.P56S|DCTN1_uc002sku.2_Missense_Mutation_p.P56S|DCTN1_uc002skw.1_Missense_Mutation_p.P166S|DCTN1_uc010ffd.2_Missense_Mutation_p.P170S|DCTN1_uc002sky.2_Missense_Mutation_p.P153S	NM_004082	NP_004073	Q14203	DCTN1_HUMAN	dynactin 1 isoform 1	190	Ser-rich.				cell death|G2/M transition of mitotic cell cycle|mitosis|nervous system development	centrosome|cytosol|kinetochore|microtubule|spindle pole	motor activity|protein binding			ovary(3)|skin(2)	5						GCTGCCAGCGGAGTCTGAGCC	0.667													6	5					0	0	0.001168	0	0
CCDC142	84865	broad.mit.edu	37	2	74707920	74707920	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:74707920G>A	uc002slr.2	-	5	1872	c.1479C>T	c.(1477-1479)ATC>ATT	p.I493I	TTC31_uc002sls.2_5'Flank|TTC31_uc010yrv.1_5'Flank|TTC31_uc002slt.2_5'Flank|TTC31_uc002slu.2_5'Flank|CCDC142_uc002slo.2_RNA|CCDC142_uc002slq.2_Silent_p.I486I|CCDC142_uc002slp.2_Silent_p.I493I	NM_032779	NP_116168	Q17RM4	CC142_HUMAN	coiled-coil domain containing 142	493										central_nervous_system(1)	1						TCAGCTTCTGGATCTCCAGGC	0.547													11	53					0	0	0.004007	0	0
TTC31	64427	broad.mit.edu	37	2	74720195	74720195	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:74720195C>T	uc002slt.2	+	13	1433	c.1410C>T	c.(1408-1410)CTC>CTT	p.L470L	TTC31_uc010yrv.1_Missense_Mutation_p.S129F|TTC31_uc002slu.2_Silent_p.L324L	NM_022492	NP_071937	Q49AM3	TTC31_HUMAN	tetratricopeptide repeat domain 31	470							binding				0						TGTCTCCACTCTTGCATTATC	0.607													49	131					0	0	0.014410	0	0
C2orf65	130951	broad.mit.edu	37	2	74834197	74834197	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:74834197C>T	uc002smy.2	-	4	697	c.580G>A	c.(580-582)GAT>AAT	p.D194N	C2orf65_uc010ysa.1_Missense_Mutation_p.D194N|C2orf65_uc002smz.2_Missense_Mutation_p.D194N	NM_138804	NP_620159	Q8TC57	CB065_HUMAN	hypothetical protein LOC130951	194					chromatin assembly|female gamete generation|RNA processing|spermatogenesis	integral to membrane				ovary(1)|pancreas(1)	2						TTGCTGGTATCCTCAACAGGA	0.338													24	39					0	0	0.003330	0	0
REG1A	5967	broad.mit.edu	37	2	79349191	79349191	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:79349191G>A	uc002snz.2	+	4	364	c.261G>A	c.(259-261)CTG>CTA	p.L87L	REG1A_uc010ffx.1_3'UTR|REG1A_uc010ysd.1_Silent_p.L87L	NM_002909	NP_002900	P05451	REG1A_HUMAN	regenerating islet-derived 1 alpha precursor	87	C-type lectin.				positive regulation of cell proliferation	extracellular region	growth factor activity|sugar binding				0						TGGCCTCACTGATTAAGGAGA	0.502													19	54					0	0	0.008871	0	0
CTNNA2	1496	broad.mit.edu	37	2	80136838	80136838	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:80136838G>A	uc010ysh.1	+	6	976	c.971G>A	c.(970-972)CGA>CAA	p.R324Q	CTNNA2_uc010yse.1_Missense_Mutation_p.R324Q|CTNNA2_uc010ysf.1_Missense_Mutation_p.R324Q|CTNNA2_uc010ysg.1_Missense_Mutation_p.R324Q	NM_004389	NP_004380	P26232	CTNA2_HUMAN	catenin, alpha 2 isoform 1	324					axonogenesis|brain morphogenesis|cell-cell adhesion|dendrite morphogenesis|muscle cell differentiation|positive regulation of muscle cell differentiation|prepulse inhibition|radial glia guided migration of Purkinje cell|regulation of synapse structural plasticity	actin cytoskeleton|axon|cytosol	cadherin binding|structural constituent of cytoskeleton			pancreas(4)|lung(3)|breast(1)|skin(1)	9						TCCTGCACGCGAGACGACCGG	0.647													8	54					0	0	0.003080	0	0
CTNNA2	1496	broad.mit.edu	37	2	80816456	80816456	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:80816456G>A	uc010ysh.1	+	14	2040	c.2035G>A	c.(2035-2037)GAG>AAG	p.E679K	CTNNA2_uc010yse.1_Missense_Mutation_p.E679K|CTNNA2_uc010ysf.1_Missense_Mutation_p.E679K|CTNNA2_uc010ysg.1_Missense_Mutation_p.E679K|CTNNA2_uc010ysi.1_Missense_Mutation_p.E311K|CTNNA2_uc010ysj.1_Missense_Mutation_p.E8K	NM_004389	NP_004380	P26232	CTNA2_HUMAN	catenin, alpha 2 isoform 1	679					axonogenesis|brain morphogenesis|cell-cell adhesion|dendrite morphogenesis|muscle cell differentiation|positive regulation of muscle cell differentiation|prepulse inhibition|radial glia guided migration of Purkinje cell|regulation of synapse structural plasticity	actin cytoskeleton|axon|cytosol	cadherin binding|structural constituent of cytoskeleton			pancreas(4)|lung(3)|breast(1)|skin(1)	9						ACCGCAGGAGGAGAAGGCAAA	0.498													15	12					0	0	0.002450	0	0
CTNNA2	1496	broad.mit.edu	37	2	80874853	80874853	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:80874853G>A	uc010ysh.1	+	18	2723	c.2718G>A	c.(2716-2718)TGG>TGA	p.W906*	CTNNA2_uc010yse.1_Nonsense_Mutation_p.W858*|CTNNA2_uc010ysf.1_Nonsense_Mutation_p.W858*|CTNNA2_uc010ysg.1_Nonsense_Mutation_p.W813*|CTNNA2_uc010ysi.1_Nonsense_Mutation_p.W490*|CTNNA2_uc010ysj.1_Nonsense_Mutation_p.W187*	NM_004389	NP_004380	P26232	CTNA2_HUMAN	catenin, alpha 2 isoform 1	906					axonogenesis|brain morphogenesis|cell-cell adhesion|dendrite morphogenesis|muscle cell differentiation|positive regulation of muscle cell differentiation|prepulse inhibition|radial glia guided migration of Purkinje cell|regulation of synapse structural plasticity	actin cytoskeleton|axon|cytosol	cadherin binding|structural constituent of cytoskeleton			pancreas(4)|lung(3)|breast(1)|skin(1)	9						TTGTGTCTTGGAAGATGAAGG	0.483													55	85					0	0	0.014410	0	0
DNAH6	1768	broad.mit.edu	37	2	84811170	84811170	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:84811170G>A	uc010fgb.2	+	15	2414	c.2277G>A	c.(2275-2277)AAG>AAA	p.K759K	DNAH6_uc002soo.2_Silent_p.K338K|DNAH6_uc002sop.2_Silent_p.K338K	NM_001370	NP_001361	Q9C0G6	DYH6_HUMAN	dynein, axonemal, heavy polypeptide 6	759	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			central_nervous_system(1)	1						AAATGTACAAGCTTATGGAAC	0.383													24	46					0	0	0.002780	0	0
C2orf89	129293	broad.mit.edu	37	2	85059191	85059191	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:85059191C>T	uc010ysl.1	-	5	1159	c.1070G>A	c.(1069-1071)CGA>CAA	p.R357Q	C2orf89_uc002sou.3_Missense_Mutation_p.R308Q	NM_001080824	NP_001074293	Q86V40	CB089_HUMAN	hypothetical protein LOC129293 precursor	357	Extracellular (Potential).					integral to membrane				ovary(1)	1						GTGGATGGGTCGTCCAGCAGG	0.562													9	52					0	0	0.006214	0	0
C2orf89	129293	broad.mit.edu	37	2	85097394	85097394	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:85097394C>T	uc010ysl.1	-	2	713	c.624G>A	c.(622-624)AAG>AAA	p.K208K	C2orf89_uc002sou.3_Silent_p.K208K|C2orf89_uc010fgc.1_Silent_p.K208K	NM_001080824	NP_001074293	Q86V40	CB089_HUMAN	hypothetical protein LOC129293 precursor	208	Extracellular (Potential).					integral to membrane				ovary(1)	1						GCTCTTCCACCTTTTCCACTG	0.488													40	146					0	0	0.014410	0	0
USP39	10713	broad.mit.edu	37	2	85872198	85872198	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:85872198C>T	uc002sqe.2	+	11	1591	c.1555C>T	c.(1555-1557)CTT>TTT	p.L519F	USP39_uc002sqb.2_Missense_Mutation_p.L250F|USP39_uc010ysu.1_Missense_Mutation_p.L441F|USP39_uc010ysv.1_Missense_Mutation_p.L416F|USP39_uc010fgn.1_Missense_Mutation_p.L519F|USP39_uc002sqf.2_Missense_Mutation_p.L519F|USP39_uc002sqg.2_Missense_Mutation_p.L519F|USP39_uc010fgo.2_Intron	NM_006590	NP_006581	Q53GS9	SNUT2_HUMAN	ubiquitin specific protease 39	519					spliceosome assembly|ubiquitin-dependent protein catabolic process	nucleus	protein binding|ubiquitin thiolesterase activity|zinc ion binding			ovary(1)	1						GATCCACGTGCTTCATCATGT	0.527													10	30					0	0	0.013537	0	0
KDM3A	55818	broad.mit.edu	37	2	86709633	86709633	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:86709633C>T	uc002sri.3	+	18	3065	c.2738C>T	c.(2737-2739)TCT>TTT	p.S913F	KDM3A_uc010ytj.1_Missense_Mutation_p.S913F|KDM3A_uc010ytk.1_Missense_Mutation_p.S861F	NM_018433	NP_060903	Q9Y4C1	KDM3A_HUMAN	jumonji domain containing 1A	913					androgen receptor signaling pathway|cell differentiation|formaldehyde biosynthetic process|histone H3-K9 demethylation|hormone-mediated signaling pathway|positive regulation of transcription, DNA-dependent|spermatogenesis|transcription, DNA-dependent	cytoplasm|nucleus	androgen receptor binding|iron ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			breast(2)|ovary(1)|central_nervous_system(1)|skin(1)	5						ATCTTTGCCTCTTTGGTGCAA	0.294													10	74					0	0	0.010729	0	0
CD8A	925	broad.mit.edu	37	2	87017743	87017743	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:87017743C>T	uc002srt.2	-	2	1000	c.111G>A	c.(109-111)GAG>GAA	p.E37E	RMND5A_uc002srs.3_Intron|CD8A_uc002srv.2_Silent_p.E37E|CD8A_uc010ytn.1_Silent_p.E78E|CD8A_uc002sru.2_Silent_p.E37E	NM_001768	NP_001759	P01732	CD8A_HUMAN	CD8 antigen alpha polypeptide isoform 1	37	Ig-like V-type.|Extracellular (Potential).				antigen processing and presentation|regulation of immune response|transmembrane receptor protein tyrosine kinase signaling pathway	extracellular region|integral to plasma membrane|T cell receptor complex	coreceptor activity|MHC class I protein binding			ovary(1)	1						GCTCCACTGTCTCGCCCAGGT	0.697													16	25					0	0	0.007413	0	0
SMYD1	150572	broad.mit.edu	37	2	88396129	88396129	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:88396129C>T	uc002ssr.2	+	6	716	c.714C>T	c.(712-714)GCC>GCT	p.A238A	SMYD1_uc002ssq.1_Intron|SMYD1_uc002sss.2_5'UTR	NM_198274	NP_938015	Q8NB12	SMYD1_HUMAN	SET and MYND domain containing 1	238	SET.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			ovary(2)|lung(1)|skin(1)	4						AGCTCCGGGCCCTAGGCAAGA	0.507													20	98					0	0	0.014323	0	0
Unknown	0	broad.mit.edu	37	2	89156946	89156946	+	RNA	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:89156946G>A	uc010ytr.1	-	243		c.9979C>T			uc002sti.1_RNA|uc002stj.1_RNA					Parts of antibodies, mostly variable regions.																		CGCAGGCGTAGACTTTGTGTT	0.577													12	50					0	0	0.013537	0	0
Unknown	0	broad.mit.edu	37	2	89442596	89442596	+	RNA	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:89442596C>T	uc010ytr.1	-	32		c.4008G>A			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		TTCCATGGTTCCCTCTGGGTC	0.572													13	42					0	0	0.004990	0	0
Unknown	0	broad.mit.edu	37	2	89513063	89513063	+	RNA	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:89513063G>A	uc010ytr.1	-	23		c.2825C>T			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		AGGAGCTTAGGAACTTTCCCT	0.512													31	100					0	0	0.004878	0	0
Unknown	0	broad.mit.edu	37	2	89544305	89544305	+	RNA	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:89544305C>T	uc010ytr.1	-	14		c.1880G>A			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		ACCCCAACATCCTCAGCCTCC	0.537													11	67					0	0	0.002450	0	0
Unknown	0	broad.mit.edu	37	2	90121860	90121860	+	RNA	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:90121860G>A	uc010fhm.2	+	16		c.1729G>A								Parts of antibodies, mostly variable regions.																		ACATCCAGATGACCCAGTCTC	0.443													27	179					0	0	0.009535	0	0
Unknown	0	broad.mit.edu	37	2	90139140	90139140	+	RNA	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:90139140C>T	uc010fhm.2	+	17		c.2052C>T								Parts of antibodies, mostly variable regions.																		TCCTGGGGCTCCTGCTGCTCT	0.512													26	133					0	0	0.012213	0	0
Unknown	0	broad.mit.edu	37	2	90249257	90249257	+	RNA	SNP	T	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:90249257T>A	uc010fhm.2	+	28		c.3800T>A								Parts of antibodies, mostly variable regions.																		TCTTCATCTATTATGCATCCA	0.502													30	110					0	0	0.013726	0	0
ANKRD20B	729171	broad.mit.edu	37	2	95513801	95513801	+	RNA	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:95513801C>T	uc010fhp.2	-	5		c.604G>A				NR_003366				Homo sapiens ankyrin repeat domain 20B (ANKRD20B), non-coding RNA.												0						TTCTGCATCTCGTCCACACAT	0.358													47	469					0	0	0.014410	0	0
TEKT4	150483	broad.mit.edu	37	2	95540641	95540641	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:95540641C>T	uc002stw.1	+	4	927	c.834C>T	c.(832-834)TCC>TCT	p.S278S	uc002stv.1_Intron|TEKT4_uc010fhr.1_RNA	NM_144705	NP_653306	Q8WW24	TEKT4_HUMAN	tektin 4	278					cell projection organization|microtubule cytoskeleton organization	cilium axoneme|flagellar axoneme|microtubule				ovary(1)|breast(1)|skin(1)	3						GCGACACCTCCGAGGACCTGC	0.682													3	15					0	0	0.004672	0	0
TEKT4	150483	broad.mit.edu	37	2	95541342	95541342	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:95541342G>A	uc002stw.1	+	5	1039	c.946G>A	c.(946-948)GAA>AAA	p.E316K	uc002stv.1_Intron|TEKT4_uc010fhr.1_RNA	NM_144705	NP_653306	Q8WW24	TEKT4_HUMAN	tektin 4	316	Potential.				cell projection organization|microtubule cytoskeleton organization	cilium axoneme|flagellar axoneme|microtubule				ovary(1)|breast(1)|skin(1)	3						GACACTGCGGGAAATCACAGA	0.607													18	22					0	0	0.007413	0	0
PROM2	150696	broad.mit.edu	37	2	95943211	95943211	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:95943211G>A	uc002suh.1	+	7	1005	c.872G>A	c.(871-873)CGG>CAG	p.R291Q	PROM2_uc002sui.2_Missense_Mutation_p.R291Q|PROM2_uc002suj.2_5'UTR|PROM2_uc002suk.2_Missense_Mutation_p.R291Q|PROM2_uc002sul.2_5'UTR	NM_144707	NP_653308	Q8N271	PROM2_HUMAN	prominin 2 precursor	291	Extracellular (Potential).					apical plasma membrane|basolateral plasma membrane|cilium membrane|integral to membrane|microvillus membrane				ovary(1)	1						CGGGAACACCGGGACCGCCTC	0.662													8	18					0	0	0.008291	0	0
ADRA2B	151	broad.mit.edu	37	2	96781379	96781380	+	Missense_Mutation	DNP	GG	TA	TA			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:96781379_96781380GG>TA	uc002svi.2	-	1	509_510	c.509_510CC>TA	c.(508-510)GCC>GTA	p.A170V		NM_000682	NP_000673	P18089	ADA2B_HUMAN	alpha-2B-adrenergic receptor	170	Helical; Name=5; (By similarity).				activation of MAPK activity by adrenergic receptor signaling pathway|activation of protein kinase B activity|blood coagulation|cell-cell signaling|epidermal growth factor receptor transactivation by G-protein coupled receptor signaling pathway|negative regulation of epinephrine secretion|negative regulation of norepinephrine secretion|positive regulation of neuron differentiation	integral to plasma membrane	alpha2-adrenergic receptor activity|epinephrine binding|protein binding			ovary(2)|lung(1)	3					Bethanidine(DB00217)|Brimonidine(DB00484)|Debrisoquin(DB04840)|Ergotamine(DB00696)|Fenoldopam(DB00800)|Guanadrel Sulfate(DB00226)|Guanethidine(DB01170)|Lofexidine(DB04948)|Norepinephrine(DB00368)|Yohimbine(DB01392)	GGATGTACCAGGCCTCCTGGTT	0.629													10	29					0	0	0.004672	0	0
ASTL	431705	broad.mit.edu	37	2	96789922	96789922	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:96789922C>T	uc010yui.1	-	9	963	c.963G>A	c.(961-963)AGG>AGA	p.R321R		NM_001002036	NP_001002036	Q6HA08	ASTL_HUMAN	astacin-like metalloendopeptidase precursor	321					proteolysis		metalloendopeptidase activity|zinc ion binding				0						GGTCGGGGCTCCTGGATTCCG	0.657													12	30					0	0	0.010729	0	0
ASTL	431705	broad.mit.edu	37	2	96789975	96789975	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:96789975G>A	uc010yui.1	-	9	910	c.910C>T	c.(910-912)CCG>TCG	p.P304S		NM_001002036	NP_001002036	Q6HA08	ASTL_HUMAN	astacin-like metalloendopeptidase precursor	304					proteolysis		metalloendopeptidase activity|zinc ion binding				0						AGGGAGGCCGGAGCGGGGCTC	0.637													8	14					0	0	0.004482	0	0
SNRNP200	23020	broad.mit.edu	37	2	96944689	96944689	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:96944689G>A	uc002svu.2	-	37	5267	c.5181C>T	c.(5179-5181)CAC>CAT	p.H1727H	SNRNP200_uc002svt.2_Silent_p.H337H|SNRNP200_uc010yuj.1_RNA	NM_014014	NP_054733	O75643	U520_HUMAN	activating signal cointegrator 1 complex subunit	1727	Helicase C-terminal 2.					catalytic step 2 spliceosome|nucleoplasm|U5 snRNP	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			ovary(5)|skin(4)|large_intestine(1)	10						AGTGGTCCAGGTGAGATTCTA	0.458													14	56					0	0	0.003163	0	0
ARID5A	10865	broad.mit.edu	37	2	97216893	97216893	+	Nonsense_Mutation	SNP	G	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:97216893G>T	uc002swe.2	+	7	728	c.628G>T	c.(628-630)GAG>TAG	p.E210*	ARID5A_uc010yuq.1_Nonsense_Mutation_p.E158*|ARID5A_uc002swf.2_Nonsense_Mutation_p.E46*|ARID5A_uc002swg.2_Nonsense_Mutation_p.E158*	NM_212481	NP_997646	Q03989	ARI5A_HUMAN	AT rich interactive domain 5A	210					negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus	DNA binding				0						TCCCAGCCAGGAGCCCCCCAG	0.602													9	66					0.00621372	0.0066242	0.006214	1	0
VWA3B	200403	broad.mit.edu	37	2	98737762	98737762	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:98737762G>A	uc002syo.2	+	5	807	c.543G>A	c.(541-543)CGG>CGA	p.R181R	VWA3B_uc010yvh.1_Missense_Mutation_p.M31I|VWA3B_uc002syj.2_RNA|VWA3B_uc002syk.1_RNA|VWA3B_uc002syl.1_5'UTR|VWA3B_uc002sym.2_Silent_p.R181R|VWA3B_uc002syn.1_RNA	NM_144992	NP_659429	Q502W6	VWA3B_HUMAN	von Willebrand factor A domain containing 3B	181										ovary(3)|large_intestine(2)|skin(1)	6						TCCTTTTCAGGGTTTCTCAAG	0.522													11	18					0	0	0.013537	0	0
VWA3B	200403	broad.mit.edu	37	2	98744761	98744761	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:98744761C>T	uc002syo.2	+	6	1026	c.762C>T	c.(760-762)CTC>CTT	p.L254L	VWA3B_uc010yvh.1_Silent_p.L104L|VWA3B_uc002syj.2_RNA|VWA3B_uc002syk.1_RNA|VWA3B_uc002syl.1_Intron|VWA3B_uc002sym.2_Silent_p.L254L|VWA3B_uc002syn.1_RNA	NM_144992	NP_659429	Q502W6	VWA3B_HUMAN	von Willebrand factor A domain containing 3B	254										ovary(3)|large_intestine(2)|skin(1)	6						AGGAGCTTCTCCTCCAGAGGG	0.493													34	55					0	0	0.013726	0	0
VWA3B	200403	broad.mit.edu	37	2	98928323	98928323	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:98928323C>T	uc002syo.2	+	27	3827	c.3563C>T	c.(3562-3564)CCA>CTA	p.P1188L	VWA3B_uc002syn.1_RNA|VWA3B_uc010yvi.1_Missense_Mutation_p.P845L|VWA3B_uc002syp.1_Missense_Mutation_p.P580L|VWA3B_uc002syq.1_Missense_Mutation_p.P464L|VWA3B_uc002syr.1_Missense_Mutation_p.P505L|VWA3B_uc002sys.2_RNA	NM_144992	NP_659429	Q502W6	VWA3B_HUMAN	von Willebrand factor A domain containing 3B	1188										ovary(3)|large_intestine(2)|skin(1)	6						CTCTTCTGGCCACTGAAAGAA	0.587													3	14					0	0	0.009096	0	0
CNGA3	1261	broad.mit.edu	37	2	98996729	98996729	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:98996729C>T	uc002syt.2	+	4	724	c.307C>T	c.(307-309)CGT>TGT	p.R103C	CNGA3_uc002syu.2_Missense_Mutation_p.R103C|CNGA3_uc010fij.2_Missense_Mutation_p.R107C	NM_001298	NP_001289	Q16281	CNGA3_HUMAN	cyclic nucleotide gated channel alpha 3 isoform	103					signal transduction|visual perception	integral to membrane	cGMP binding			ovary(5)|upper_aerodigestive_tract(1)	6						TGATCGTTTCCGTGGAGCCGA	0.597													20	31					0	0	0.010504	0	0
CNGA3	1261	broad.mit.edu	37	2	98996810	98996810	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:98996810G>A	uc002syt.2	+	4	805	c.388G>A	c.(388-390)GGG>AGG	p.G130R	CNGA3_uc002syu.2_Missense_Mutation_p.G130R|CNGA3_uc010fij.2_Missense_Mutation_p.G134R	NM_001298	NP_001289	Q16281	CNGA3_HUMAN	cyclic nucleotide gated channel alpha 3 isoform	130					signal transduction|visual perception	integral to membrane	cGMP binding			ovary(5)|upper_aerodigestive_tract(1)	6						AGCAGACAGAGGGAGAAGGTA	0.572													7	9					0	0	0.006214	0	0
LYG1	129530	broad.mit.edu	37	2	99907775	99907775	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:99907775G>A	uc002szy.2	-	5	508	c.258C>T	c.(256-258)ATC>ATT	p.I86I	MRPL30_uc002szl.1_Intron|LYG1_uc010yvo.1_Silent_p.I86I	NM_174898	NP_777558	Q8N1E2	LYG1_HUMAN	lysozyme g-like protein 1 precursor	86					cell wall macromolecule catabolic process|peptidoglycan catabolic process	extracellular region	lysozyme activity				0						AGACACCAGCGATCACGGCAG	0.488													21	25					0	0	0.014323	0	0
AFF3	3899	broad.mit.edu	37	2	100167982	100167982	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:100167982G>A	uc002tag.2	-	24	3871	c.3635C>T	c.(3634-3636)TCC>TTC	p.S1212F	AFF3_uc002taf.2_Missense_Mutation_p.S1237F	NM_002285	NP_002276	P51826	AFF3_HUMAN	AF4/FMR2 family, member 3 isoform 1	1212					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(2)|pancreas(1)|lung(1)|kidney(1)|skin(1)	6						GCCCTGTTGGGAGTACTGGAC	0.592													6	31					0	0	0.001168	0	0
LONRF2	164832	broad.mit.edu	37	2	100911913	100911913	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:100911913C>T	uc002tal.3	-	8	2219	c.1579G>A	c.(1579-1581)GAA>AAA	p.E527K	LONRF2_uc010yvs.1_RNA	NM_198461	NP_940863	Q1L5Z9	LONF2_HUMAN	LON peptidase N-terminal domain and ring finger	527					proteolysis		ATP-dependent peptidase activity|zinc ion binding			large_intestine(1)|skin(1)	2						TCTGACATTTCTTCATCATAA	0.358													26	48					0	0	0.007291	0	0
TBC1D8	11138	broad.mit.edu	37	2	101655105	101655105	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:101655105C>T	uc010fiv.2	-	7	1179	c.1048G>A	c.(1048-1050)GAG>AAG	p.E350K	TBC1D8_uc010yvw.1_Missense_Mutation_p.E365K|TBC1D8_uc002tau.3_Missense_Mutation_p.E107K	NM_001102426	NP_001095896	O95759	TBCD8_HUMAN	TBC1 domain family, member 8	350	GRAM 2.				blood circulation|positive regulation of cell proliferation	intracellular|membrane	calcium ion binding|Rab GTPase activator activity			ovary(3)	3						TCCATCTTCTCGATGCTCACC	0.557													15	56					0	0	0.004990	0	0
CREG2	200407	broad.mit.edu	37	2	102000125	102000125	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:102000125C>T	uc002tba.2	-	2	527	c.481G>A	c.(481-483)GAT>AAT	p.D161N		NM_153836	NP_722578	Q8IUH2	CREG2_HUMAN	cellular repressor of E1A-stimulated genes 2	161						extracellular region	FMN binding			ovary(1)	1						AAGGGGCCATCACTGACGGGC	0.522													23	64					0	0	0.004656	0	0
IL1R2	7850	broad.mit.edu	37	2	102625058	102625058	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:102625058G>A	uc002tbm.2	+	2	250	c.21G>A	c.(19-21)TTG>TTA	p.L7L	IL1R2_uc002tbn.2_Silent_p.L7L|IL1R2_uc002tbo.1_Silent_p.L7L	NM_004633	NP_004624	P27930	IL1R2_HUMAN	interleukin 1 receptor, type II precursor	7					immune response	integral to membrane|plasma membrane	interleukin-1, Type II, blocking receptor activity			ovary(1)|breast(1)	2					Anakinra(DB00026)	TGTACGTGTTGGTAATGGGAG	0.542													41	139					0	0	0.014410	0	0
IL1RL1	9173	broad.mit.edu	37	2	102957179	102957179	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:102957179C>T	uc002tbu.1	+	5	772	c.501C>T	c.(499-501)GTC>GTT	p.V167V	IL1RL1_uc010ywa.1_Silent_p.V50V|IL18R1_uc002tbw.3_Intron|IL1RL1_uc002tbv.2_Silent_p.V167V	NM_016232	NP_057316	Q01638	ILRL1_HUMAN	interleukin 1 receptor-like 1 isoform 1	167	Ig-like C2-type 2.|Extracellular (Potential).				innate immune response	integral to membrane	interleukin-1 receptor activity|receptor signaling protein activity			skin(2)|ovary(1)|central_nervous_system(1)	4						CATTTTTGGTCATTGATAATG	0.393													19	60					0	0	0.008871	0	0
IL1RL1	9173	broad.mit.edu	37	2	102968097	102968097	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:102968097G>A	uc002tbu.1	+	11	1658	c.1387G>A	c.(1387-1389)GAG>AAG	p.E463K	IL18R1_uc002tbw.3_Intron	NM_016232	NP_057316	Q01638	ILRL1_HUMAN	interleukin 1 receptor-like 1 isoform 1	463	TIR.|Cytoplasmic (Potential).				innate immune response	integral to membrane	interleukin-1 receptor activity|receptor signaling protein activity			skin(2)|ovary(1)|central_nervous_system(1)	4						CTACGAGCAGGAGGTTGCCCT	0.537													9	31					0	0	0.006214	0	0
IL18R1	8809	broad.mit.edu	37	2	102984491	102984491	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:102984491G>A	uc002tbw.3	+	3	415	c.265G>A	c.(265-267)GAG>AAG	p.E89K	IL18R1_uc010ywb.1_Missense_Mutation_p.E89K|IL18R1_uc010ywc.1_Missense_Mutation_p.E89K|IL18R1_uc010ywd.1_Intron|IL18R1_uc010fiy.2_Missense_Mutation_p.E89K	NM_003855	NP_003846	Q13478	IL18R_HUMAN	interleukin 18 receptor 1 precursor	89	Ig-like C2-type 1.|Extracellular (Potential).				innate immune response	integral to membrane|plasma membrane	interleukin-1 receptor activity			ovary(2)|pancreas(1)	3						TTGGCCAGTTGAGTTGAATGA	0.418													20	72					0	0	0.007413	0	0
IL18R1	8809	broad.mit.edu	37	2	102992414	102992414	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:102992414G>A	uc002tbw.3	+	5	666	c.516G>A	c.(514-516)AAG>AAA	p.K172K	IL18R1_uc010ywc.1_Silent_p.K172K|IL18R1_uc010ywd.1_Silent_p.K17K|IL18R1_uc010fiy.2_Silent_p.K172K	NM_003855	NP_003846	Q13478	IL18R_HUMAN	interleukin 18 receptor 1 precursor	172	Ig-like C2-type 2.|Extracellular (Potential).				innate immune response	integral to membrane|plasma membrane	interleukin-1 receptor activity			ovary(2)|pancreas(1)	3						CAACGATAAAGAAGAACGCCG	0.308													13	18					0	0	0.013537	0	0
IL18R1	8809	broad.mit.edu	37	2	102992417	102992417	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:102992417G>A	uc002tbw.3	+	5	669	c.519G>A	c.(517-519)AAG>AAA	p.K173K	IL18R1_uc010ywc.1_Silent_p.K173K|IL18R1_uc010ywd.1_Silent_p.K18K|IL18R1_uc010fiy.2_Silent_p.K173K	NM_003855	NP_003846	Q13478	IL18R_HUMAN	interleukin 18 receptor 1 precursor	173	Ig-like C2-type 2.|Extracellular (Potential).				innate immune response	integral to membrane|plasma membrane	interleukin-1 receptor activity			ovary(2)|pancreas(1)	3						CGATAAAGAAGAACGCCGAGT	0.313													13	17					0	0	0.013537	0	0
IL18RAP	8807	broad.mit.edu	37	2	103061691	103061691	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:103061691C>T	uc002tbx.2	+	9	1447	c.963C>T	c.(961-963)ATC>ATT	p.I321I	IL18RAP_uc010fiz.2_Silent_p.I179I	NM_003853	NP_003844	O95256	I18RA_HUMAN	interleukin 18 receptor accessory protein	321	Ig-like C2-type 2.|Extracellular (Potential).				cell surface receptor linked signaling pathway|inflammatory response|innate immune response	integral to membrane	transmembrane receptor activity			skin(3)|ovary(2)	5						AGCGTAATATCATCTTGGAAA	0.388													14	22					0	0	0.004007	0	0
SLC9A2	6549	broad.mit.edu	37	2	103236460	103236460	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:103236460C>T	uc002tca.2	+	1	295	c.153C>T	c.(151-153)AGC>AGT	p.S51S		NM_003048	NP_003039	Q9UBY0	SL9A2_HUMAN	solute carrier family 9 (sodium/hydrogen	51	Cytoplasmic (Potential).					integral to membrane|plasma membrane	sodium:hydrogen antiporter activity			central_nervous_system(3)|skin(3)|breast(2)	8						GCCCGCCTAGCCCTGCGAGCG	0.527													9	7					0	0	0.006214	0	0
SLC9A2	6549	broad.mit.edu	37	2	103236592	103236592	+	Missense_Mutation	SNP	G	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:103236592G>C	uc002tca.2	+	1	427	c.285G>C	c.(283-285)AAG>AAC	p.K95N		NM_003048	NP_003039	Q9UBY0	SL9A2_HUMAN	solute carrier family 9 (sodium/hydrogen	95						integral to membrane|plasma membrane	sodium:hydrogen antiporter activity			central_nervous_system(3)|skin(3)|breast(2)	8						CCCTGGCCAAGATTGGTGAGC	0.612													12	13					0	0	0.010729	0	0
SLC9A2	6549	broad.mit.edu	37	2	103274273	103274273	+	Missense_Mutation	SNP	T	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:103274273T>A	uc002tca.2	+	2	682	c.540T>A	c.(538-540)AAT>AAA	p.N180K		NM_003048	NP_003039	Q9UBY0	SL9A2_HUMAN	solute carrier family 9 (sodium/hydrogen	180	Helical; Name=E/M5; (Potential).					integral to membrane|plasma membrane	sodium:hydrogen antiporter activity			central_nervous_system(3)|skin(3)|breast(2)	8						CACTTTGGAATTCCATTGGCA	0.502													50	143					0	0	0.014410	0	0
SLC9A2	6549	broad.mit.edu	37	2	103274276	103274276	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:103274276C>T	uc002tca.2	+	2	685	c.543C>T	c.(541-543)TCC>TCT	p.S181S		NM_003048	NP_003039	Q9UBY0	SL9A2_HUMAN	solute carrier family 9 (sodium/hydrogen	181	Helical; Name=E/M5; (Potential).					integral to membrane|plasma membrane	sodium:hydrogen antiporter activity			central_nervous_system(3)|skin(3)|breast(2)	8						TTTGGAATTCCATTGGCATTG	0.498													82	115					0	0	0.014410	0	0
SLC9A2	6549	broad.mit.edu	37	2	103317563	103317564	+	Missense_Mutation	DNP	CT	TC	TC			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:103317563_103317564CT>TC	uc002tca.2	+	8	1763_1764	c.1621_1622CT>TC	c.(1621-1623)CTT>TCT	p.L541S		NM_003048	NP_003039	Q9UBY0	SL9A2_HUMAN	solute carrier family 9 (sodium/hydrogen	541	Cytoplasmic (Potential).					integral to membrane|plasma membrane	sodium:hydrogen antiporter activity			central_nervous_system(3)|skin(3)|breast(2)	8						TCTGCGGAAGCTTTTGATTCGG	0.302													12	41					0	0	0.004672	0	0
C2orf40	84417	broad.mit.edu	37	2	106694260	106694260	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:106694260C>T	uc010fjf.2	+	4	433	c.325C>T	c.(325-327)CGA>TGA	p.R109*		NM_032411	NP_115787	Q9H1Z8	AUGN_HUMAN	esophageal cancer related gene 4 protein	109						extracellular region|transport vesicle					0						TAACAGAGATCGAAATGGACA	0.453													21	58					0	0	0.003330	0	0
RGPD3	653489	broad.mit.edu	37	2	107041049	107041049	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:107041049C>T	uc010ywi.1	-	20	3431	c.3374G>A	c.(3373-3375)GGA>GAA	p.G1125E		NM_001144013	NP_001137485	A6NKT7	RGPD3_HUMAN	RANBP2-like and GRIP domain containing 3	1125	RanBD1 1.				intracellular transport		binding			ovary(1)	1						TCTATCTGATCCAGAGAGGGG	0.433													47	202					0	0	0.014410	0	0
RGPD3	653489	broad.mit.edu	37	2	107049619	107049619	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:107049619T>C	uc010ywi.1	-	16	2385	c.2328A>G	c.(2326-2328)ATA>ATG	p.I776M		NM_001144013	NP_001137485	A6NKT7	RGPD3_HUMAN	RANBP2-like and GRIP domain containing 3	776					intracellular transport		binding			ovary(1)	1						TAGAATGTTTTATTTCTGAAT	0.348													32	114					0	0	0.014410	0	0
RGPD4	285190	broad.mit.edu	37	2	108475844	108475844	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:108475844C>T	uc010ywk.1	+	11	1550	c.1468C>T	c.(1468-1470)CTT>TTT	p.L490F	RGPD4_uc002tdu.2_5'UTR|RGPD4_uc010ywl.1_RNA	NM_182588	NP_872394	Q7Z3J3	RGPD4_HUMAN	RANBP2-like and GRIP domain containing 4	490					intracellular transport		binding			skin(2)	2						GGTATTTCTCCTTGGAGTAGT	0.313													22	51					0	0	0.013726	0	0
RGPD4	285190	broad.mit.edu	37	2	108487731	108487731	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:108487731G>A	uc010ywk.1	+	20	3353	c.3271G>A	c.(3271-3273)GAG>AAG	p.E1091K	RGPD4_uc002tdu.2_Missense_Mutation_p.E278K|RGPD4_uc010ywl.1_RNA	NM_182588	NP_872394	Q7Z3J3	RGPD4_HUMAN	RANBP2-like and GRIP domain containing 4	1091	RanBD1 1.				intracellular transport		binding			skin(2)	2						TCTCAAAAACGAGGTCAATGG	0.408													85	284					0	0	0.014410	0	0
RGPD4	285190	broad.mit.edu	37	2	108488514	108488514	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:108488514G>A	uc010ywk.1	+	20	4136	c.4054G>A	c.(4054-4056)GAA>AAA	p.E1352K	RGPD4_uc002tdu.2_Missense_Mutation_p.E539K|RGPD4_uc010ywl.1_Intron	NM_182588	NP_872394	Q7Z3J3	RGPD4_HUMAN	RANBP2-like and GRIP domain containing 4	1352	RanBD1 2.				intracellular transport		binding			skin(2)	2						CAGTGGTGAGGAAAATGAAAA	0.368													60	196					0	0	0.014410	0	0
SLC5A7	60482	broad.mit.edu	37	2	108627152	108627152	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:108627152G>A	uc002tdv.2	+	9	1854	c.1578G>A	c.(1576-1578)ATG>ATA	p.M526I	SLC5A7_uc010ywm.1_Missense_Mutation_p.M279I|SLC5A7_uc010fjj.2_Missense_Mutation_p.M526I|SLC5A7_uc010ywn.1_Missense_Mutation_p.M413I	NM_021815	NP_068587	Q9GZV3	SC5A7_HUMAN	solute carrier family 5 (choline transporter),	526	Cytoplasmic (Potential).				acetylcholine biosynthetic process|neurotransmitter secretion	integral to membrane|plasma membrane	choline:sodium symporter activity			ovary(2)|central_nervous_system(1)|skin(1)	4					Choline(DB00122)	AAGAAAACATGGATAAGACAA	0.373													6	25					0	0	0.001168	0	0
SULT1C3	442038	broad.mit.edu	37	2	108881739	108881739	+	Missense_Mutation	SNP	G	A	A	rs142520746		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:108881739G>A	uc010ywo.1	+	7	847	c.847G>A	c.(847-849)GAA>AAA	p.E283K		NM_001008743	NP_001008743	Q6IMI6	ST1C3_HUMAN	sulfotransferase family, cytosolic, 1C, member	283						cytoplasm	alcohol sulfotransferase activity			skin(1)	1						GGCCCAAAATGAAGAATTTGA	0.468													17	59					0	0	0.006122	0	0
RANBP2	5903	broad.mit.edu	37	2	109367805	109367805	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:109367805C>T	uc002tem.3	+	10	1485	c.1359C>T	c.(1357-1359)ATC>ATT	p.I453I		NM_006267	NP_006258	P49792	RBP2_HUMAN	RAN binding protein 2	453					carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA transport|protein folding|protein import into nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore	peptidyl-prolyl cis-trans isomerase activity|Ran GTPase binding|zinc ion binding		RANBP2/ALK(16)	soft_tissue(16)|lung(1)|pancreas(1)	18						TACCTGGAATCCGAAAATGGC	0.383													31	144					0	0	0.008740	0	0
SH3RF3	344558	broad.mit.edu	37	2	110049065	110049065	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:110049065G>A	uc010ywt.1	+	6	1512	c.1512G>A	c.(1510-1512)GGG>GGA	p.G504G		NM_001099289	NP_001092759	Q8TEJ3	SH3R3_HUMAN	SH3 domain containing ring finger 3	504	SH3 3.						zinc ion binding			ovary(1)	1						GGTTCAAGGGGGCGTCTCTGA	0.622													6	13					0	0	0.001984	0	0
SH3RF3	344558	broad.mit.edu	37	2	110065723	110065723	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:110065723C>T	uc010ywt.1	+	8	1926	c.1926C>T	c.(1924-1926)CTC>CTT	p.L642L		NM_001099289	NP_001092759	Q8TEJ3	SH3R3_HUMAN	SH3 domain containing ring finger 3	642							zinc ion binding			ovary(1)	1						CCACCAGCCTCAGGCCCCACT	0.692													7	7					0	0	0.003080	0	0
MALL	7851	broad.mit.edu	37	2	110849256	110849256	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:110849256G>A	uc002tfk.2	-	2	971	c.197C>T	c.(196-198)TCG>TTG	p.S66L	MALL_uc010fju.2_Intron	NM_005434	NP_005425	Q13021	MALL_HUMAN	mal, T-cell differentiation protein-like	66	MARVEL.|Helical; (Potential).				cholesterol homeostasis	clathrin-coated vesicle|Golgi membrane|integral to membrane|membrane raft|plasma membrane	protein binding			ovary(1)|skin(1)	2				Epithelial(1;0.0546)|STAD - Stomach adenocarcinoma(1;0.18)		GATGAGAAACGAGGTGAGCGA	0.458													17	63					0	0	0.004990	0	0
ACOXL	55289	broad.mit.edu	37	2	111551742	111551742	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:111551742C>T	uc002tgr.3	+	5	560	c.336C>T	c.(334-336)CTC>CTT	p.L112L	ACOXL_uc010fkc.2_Silent_p.L112L|ACOXL_uc010yxk.1_Silent_p.L112L	NM_001105516	NP_001098986	Q9NUZ1	ACOXL_HUMAN	acyl-Coenzyme A oxidase-like 2	112					fatty acid beta-oxidation	peroxisome	acyl-CoA dehydrogenase activity|acyl-CoA oxidase activity				0						CCTTTGACCTCTCTGCCCAGG	0.552													9	24					0	0	0.006214	0	0
ACOXL	55289	broad.mit.edu	37	2	111691088	111691088	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:111691088G>A	uc002tgr.3	+	12	1152	c.928G>A	c.(928-930)GAG>AAG	p.E310K	ACOXL_uc010fkc.2_Missense_Mutation_p.E310K|ACOXL_uc010yxk.1_Missense_Mutation_p.E310K	NM_001105516	NP_001098986	Q9NUZ1	ACOXL_HUMAN	acyl-Coenzyme A oxidase-like 2	310					fatty acid beta-oxidation	peroxisome	acyl-CoA dehydrogenase activity|acyl-CoA oxidase activity				0						CCTCCTGGATGAGGATGTCTT	0.557													14	43					0	0	0.001855	0	0
POLR1B	84172	broad.mit.edu	37	2	113316947	113316947	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:113316947C>T	uc002thw.2	+	9	1988	c.1408C>T	c.(1408-1410)CGC>TGC	p.R470C	POLR1B_uc010fkn.2_Missense_Mutation_p.R414C|POLR1B_uc002thx.2_Missense_Mutation_p.R331C|POLR1B_uc010fko.2_Intron|POLR1B_uc010fkp.2_Intron|POLR1B_uc010yxn.1_Missense_Mutation_p.R508C|POLR1B_uc002thy.2_Missense_Mutation_p.R331C|POLR1B_uc010yxo.1_Missense_Mutation_p.R247C	NM_019014	NP_061887	Q9H9Y6	RPA2_HUMAN	RNA polymerase I polypeptide B isoform 1	470					termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription initiation from RNA polymerase I promoter	nucleoplasm	DNA binding|DNA-directed RNA polymerase activity|metal ion binding|protein binding|ribonucleoside binding			ovary(1)	1						CTCCCATTTCCGCTGCGTGCA	0.517													37	134					0	0	0.004878	0	0
IL1A	3552	broad.mit.edu	37	2	113537166	113537166	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:113537166C>T	uc002tig.2	-	5	1357	c.397G>A	c.(397-399)GAA>AAA	p.E133K		NM_000575	NP_000566	P01583	IL1A_HUMAN	interleukin 1, alpha proprotein	133					anti-apoptosis|apoptosis|cell proliferation|cellular response to heat|cytokine-mediated signaling pathway|fever generation|immune response|negative regulation of cell proliferation|positive regulation of angiogenesis|positive regulation of cell division|positive regulation of cytokine secretion|positive regulation of interleukin-2 biosynthetic process|positive regulation of mitosis|positive regulation vascular endothelial growth factor production|response to copper ion	cytosol|extracellular space	copper ion binding|cytokine activity|interleukin-1 receptor binding			lung(1)	1						AGGATGAATTCGTATTTGATG	0.403													12	35					0	0	0.013537	0	0
IL1B	3553	broad.mit.edu	37	2	113588928	113588928	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:113588928C>T	uc002tii.1	-	6	625	c.538G>A	c.(538-540)GAA>AAA	p.E180K	IL1B_uc002tih.1_Missense_Mutation_p.E149K	NM_000576	NP_000567	P01584	IL1B_HUMAN	interleukin 1, beta proprotein	180					activation of MAPK activity|anti-apoptosis|apoptosis|cell-cell signaling|cellular response to drug|cellular response to mechanical stimulus|cytokine-mediated signaling pathway|embryo implantation|fever generation|negative regulation of adiponectin secretion|negative regulation of cell proliferation|negative regulation of glucose transport|negative regulation of insulin receptor signaling pathway|negative regulation of lipid catabolic process|negative regulation of MAP kinase activity|positive regulation of angiogenesis|positive regulation of calcidiol 1-monooxygenase activity|positive regulation of cell adhesion molecule production|positive regulation of cell division|positive regulation of fever generation|positive regulation of granulocyte macrophage colony-stimulating factor production|positive regulation of heterotypic cell-cell adhesion|positive regulation of histone acetylation|positive regulation of histone phosphorylation|positive regulation of interferon-gamma production|positive regulation of interleukin-2 biosynthetic process|positive regulation of interleukin-6 production|positive regulation of interleukin-8 production|positive regulation of lipid catabolic process|positive regulation of membrane protein ectodomain proteolysis|positive regulation of mitosis|positive regulation of monocyte chemotactic protein-1 production|positive regulation of myosin light chain kinase activity|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric oxide biosynthetic process|positive regulation of prostaglandin secretion|positive regulation of protein export from nucleus|positive regulation of T cell proliferation|positive regulation vascular endothelial growth factor production|regulation of insulin secretion|sequestering of triglyceride|smooth muscle adaptation	cytosol|extracellular space	cytokine activity|growth factor activity|interleukin-1 receptor binding|protein domain specific binding			lung(3)|breast(1)	4					Anakinra(DB00026)|Minocycline(DB01017)|Procaterol(DB01366)	AGATTCTTTTCCTTGAGGCCC	0.468													41	78					0	0	0.011902	0	0
IL1F9	56300	broad.mit.edu	37	2	113742450	113742450	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:113742450G>A	uc002tio.1	+	5	403	c.334G>A	c.(334-336)GAG>AAG	p.E112K	IL1F9_uc010fkr.1_Missense_Mutation_p.E77K	NM_019618	NP_062564	Q9NZH8	IL36G_HUMAN	interleukin 1 family, member 9	112					cell-cell signaling	extracellular space	cytokine activity|interleukin-1 receptor antagonist activity				0						TGGCCAACCCGAGCCCGTGAA	0.493													43	70					0	0	0.014410	0	0
IL1F8	27177	broad.mit.edu	37	2	113789344	113789344	+	Splice_Site	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:113789344C>T	uc002tiq.1	-	2	48	c.-56_splice	c.e2-1		IL1F8_uc002tir.1_Splice_Site	NM_014438	NP_055253	Q9NZH7	IL36B_HUMAN	interleukin 1 family, member 8 isoform 1						immune response	extracellular space	cytokine activity|interleukin-1 receptor binding			ovary(1)	1						GGTGAGGAGGCTGTTAACAGT	0.408													5	23					0	0	0.000602	0	0
IL1F10	84639	broad.mit.edu	37	2	113832355	113832355	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:113832355C>T	uc002tiu.2	+	4	249	c.174C>T	c.(172-174)TTC>TTT	p.F58F	IL1F10_uc002tiv.2_Silent_p.F58F|IL1F10_uc002tiw.2_Silent_p.F50F	NM_173161	NP_775184	Q8WWZ1	IL1FA_HUMAN	interleukin 1 family, member 10	58						extracellular space	cytokine activity|interleukin-1 receptor antagonist activity			ovary(1)	1						TCCCCATTTTCCTGGGGATCC	0.582													19	49					0	0	0.010504	0	0
PSD4	23550	broad.mit.edu	37	2	113950132	113950132	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:113950132C>T	uc002tjc.2	+	6	1987	c.1804C>T	c.(1804-1806)CGG>TGG	p.R602W	PSD4_uc002tjd.2_Missense_Mutation_p.R223W|PSD4_uc002tje.2_Missense_Mutation_p.R573W|PSD4_uc002tjf.2_Missense_Mutation_p.R223W	NM_012455	NP_036587	Q8NDX1	PSD4_HUMAN	pleckstrin and Sec7 domain containing 4	602	SEC7.				regulation of ARF protein signal transduction	cytoplasm|plasma membrane	ARF guanyl-nucleotide exchange factor activity			ovary(2)	2						GGAGGGCTTCCGGAAGTCTGA	0.597													8	21					0	0	0.004482	0	0
DDX11L2	84771	broad.mit.edu	37	2	114357557	114357557	+	Nonstop_Mutation	SNP	A	G	G	rs115341812	by1000genomes	TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:114357557A>G	uc010yxx.1	-	3	709	c.382T>C	c.(382-384)TAG>CAG	p.*128Q						SubName: Full=DEAD/H box polypeptide 11 like 2;												0						GCCTACTTCTAGTGAAACTGG	0.567													3	5					0	0	0.004672	0	0
MARCO	8685	broad.mit.edu	37	2	119739064	119739064	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:119739064C>T	uc002tln.1	+	9	978	c.846C>T	c.(844-846)TTC>TTT	p.F282F	MARCO_uc010yyf.1_Silent_p.F204F	NM_006770	NP_006761	Q9UEW3	MARCO_HUMAN	macrophage receptor with collagenous structure	282	Collagen-like.|Extracellular (Potential).				cell surface receptor linked signaling pathway|innate immune response	collagen|integral to plasma membrane	pattern recognition receptor activity|scavenger receptor activity			ovary(3)|skin(2)|central_nervous_system(1)	6						AAGGTGACTTCGGGAGGCCAG	0.527													8	12					0	0	0.003080	0	0
MARCO	8685	broad.mit.edu	37	2	119749407	119749407	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:119749407G>A	uc002tln.1	+	14	1295	c.1163G>A	c.(1162-1164)GGA>GAA	p.G388E	MARCO_uc010yyf.1_Missense_Mutation_p.G310E	NM_006770	NP_006761	Q9UEW3	MARCO_HUMAN	macrophage receptor with collagenous structure	388	Collagen-like.|Extracellular (Potential).				cell surface receptor linked signaling pathway|innate immune response	collagen|integral to plasma membrane	pattern recognition receptor activity|scavenger receptor activity			ovary(3)|skin(2)|central_nervous_system(1)	6						GGTCCCAAGGGAGCCCCTGGA	0.587													6	9					0	0	0.001168	0	0
TMEM37	140738	broad.mit.edu	37	2	120194518	120194518	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:120194518C>T	uc002tly.2	+	2	109	c.75C>T	c.(73-75)TTC>TTT	p.F25F		NM_183240	NP_899063	Q8WXS4	CCGL_HUMAN	transmembrane protein 37	25	Helical; (Potential).					integral to membrane	calcium channel activity|voltage-gated ion channel activity			breast(1)	1						TTGAATCCTTCATCCGGACCC	0.617													22	45					0	0	0.014323	0	0
SCTR	6344	broad.mit.edu	37	2	120223413	120223413	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:120223413G>A	uc002tma.2	-	5	681	c.455C>T	c.(454-456)TCC>TTC	p.S152F	SCTR_uc002tlz.2_Intron	NM_002980	NP_002971	P47872	SCTR_HUMAN	secretin receptor precursor	152	Helical; Name=1; (Potential).				digestion|excretion	integral to plasma membrane	secretin receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3					Secretin(DB00021)	GACCAGGGAGGAGCTGTAGCC	0.612													17	50					0	0	0.012319	0	0
PCDP1	200373	broad.mit.edu	37	2	120373202	120373202	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:120373202C>T	uc002tmb.2	+	15	1561	c.469C>T	c.(469-471)CAT>TAT	p.H157Y	PCDP1_uc010yyq.1_Missense_Mutation_p.H287Y	NM_001029996	NP_001025167	Q4G0U5	PCDP1_HUMAN	primary ciliary dyskinesia protein 1	443						cilium	calmodulin binding				0	Colorectal(110;0.196)					CAAGGAATTTCATCCTACTTT	0.348													5	10					0	0	0.000602	0	0
TFCP2L1	29842	broad.mit.edu	37	2	122007207	122007207	+	Silent	SNP	G	A	A	rs61734658		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:122007207G>A	uc002tmx.2	-	3	324	c.231C>T	c.(229-231)ATC>ATT	p.I77I	TFCP2L1_uc010flr.2_Silent_p.I77I	NM_014553	NP_055368	Q9NZI6	TF2L1_HUMAN	LBP-9	77					female pregnancy|steroid biosynthetic process	mitochondrion|nucleolus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			pancreas(2)|ovary(1)	3	Renal(3;0.01)					CCAGTAGTCGGATTTCATAAG	0.458													34	74					0	0	0.005524	0	0
BIN1	274	broad.mit.edu	37	2	127821520	127821520	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:127821520G>A	uc002tns.1	-	8	1032	c.687C>T	c.(685-687)TCC>TCT	p.S229S	BIN1_uc010yzf.1_Silent_p.S174S|BIN1_uc010yzg.1_Silent_p.S229S|BIN1_uc002tnu.1_Silent_p.S198S|BIN1_uc002toa.1_Silent_p.S198S|BIN1_uc002tnt.1_Silent_p.S198S|BIN1_uc002tnv.1_Silent_p.S229S|BIN1_uc002tnw.1_Silent_p.S198S|BIN1_uc002tnx.1_Silent_p.S198S|BIN1_uc002tny.1_Silent_p.S229S|BIN1_uc002tnz.1_Silent_p.S198S|BIN1_uc002tob.1_Silent_p.S198S|BIN1_uc002toc.1_Silent_p.S198S	NM_139343	NP_647593	O00499	BIN1_HUMAN	bridging integrator 1 isoform 1	229	BAR.|Potential.				cell proliferation|endocytosis|interspecies interaction between organisms|multicellular organismal development	actin cytoskeleton|nucleus				ovary(2)|central_nervous_system(2)|skin(2)|lung(1)	7	Colorectal(110;0.0831)			BRCA - Breast invasive adenocarcinoma(221;0.073)		TGTTCCACAGGGACGGCAGCT	0.652													8	42					0	0	0.003080	0	0
MAP3K2	10746	broad.mit.edu	37	2	128079620	128079620	+	Splice_Site	SNP	A	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:128079620A>C	uc002toj.1	-	11	1110	c.1045_splice	c.e11+1	p.S349_splice		NM_006609	NP_006600	Q9Y2U5	M3K2_HUMAN	mitogen-activated protein kinase kinase kinase						activation of JUN kinase activity|cellular response to mechanical stimulus	nucleus	ATP binding|MAP kinase kinase kinase activity|metal ion binding|protein kinase binding			lung(3)|ovary(2)|large_intestine(1)|central_nervous_system(1)	7	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0706)		TCTATTACTTACAACGGCTGG	0.373													7	7					0	0	0.003080	0	0
PROC	5624	broad.mit.edu	37	2	128183746	128183746	+	Silent	SNP	A	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:128183746A>G	uc002tok.2	+	7	694	c.621A>G	c.(619-621)CAA>CAG	p.Q207Q	PROC_uc002tol.2_Silent_p.Q228Q|PROC_uc010yzi.1_Silent_p.Q263Q|PROC_uc010yzj.1_Silent_p.Q102Q|PROC_uc010yzk.1_Silent_p.Q262Q|PROC_uc002tom.2_Silent_p.Q241Q	NM_000312	NP_000303	P04070	PROC_HUMAN	protein C	207					blood coagulation|leukocyte migration|negative regulation of apoptosis|negative regulation of blood coagulation|peptidyl-glutamic acid carboxylation|post-translational protein modification|proteolysis	endoplasmic reticulum lumen|Golgi lumen|plasma membrane	calcium ion binding|protein binding|serine-type endopeptidase activity				0	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0673)	Antihemophilic Factor(DB00025)|Drotrecogin alfa(DB00055)|Menadione(DB00170)|Sodium Tetradecyl Sulfate(DB00464)	AAGAAGACCAAGTAGATCCGC	0.612													36	56					0	0	0.004289	0	0
MYO7B	4648	broad.mit.edu	37	2	128331610	128331610	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:128331610C>T	uc002top.2	+	7	761	c.708C>T	c.(706-708)CTC>CTT	p.L236L		NM_001080527	NP_001073996	Q6PIF6	MYO7B_HUMAN	myosin VIIB	236	Myosin head-like.					apical plasma membrane|myosin complex	actin binding|ATP binding|motor activity			ovary(1)|pancreas(1)	2	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0753)		AGCAATTTCTCCTGGAGAAGT	0.597													46	87					0	0	0.014410	0	0
MYO7B	4648	broad.mit.edu	37	2	128363455	128363455	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:128363455C>T	uc002top.2	+	20	2429	c.2376C>T	c.(2374-2376)ACC>ACT	p.T792T		NM_001080527	NP_001073996	Q6PIF6	MYO7B_HUMAN	myosin VIIB	792	IQ 3.|IQ 2.					apical plasma membrane|myosin complex	actin binding|ATP binding|motor activity			ovary(1)|pancreas(1)	2	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0753)		CAGCTGTGACCCTGCAGGCCT	0.587													9	30					0	0	0.002450	0	0
CCDC74B	91409	broad.mit.edu	37	2	130899763	130899763	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:130899763G>A	uc002tqm.1	-	3	549	c.487C>T	c.(487-489)CCT>TCT	p.P163S	CCDC74B_uc010yzw.1_Missense_Mutation_p.P265S|CCDC74B_uc002tqn.1_Intron|CCDC74B_uc010yzx.1_3'UTR	NM_207310	NP_997193	Q96LY2	CC74B_HUMAN	coiled-coil domain containing 74B	163											0	Colorectal(110;0.1)					CTGTCTGCAGGAGAGCGCACA	0.632													6	23					0	0	0.006214	0	0
GPR148	344561	broad.mit.edu	37	2	131487355	131487355	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:131487355C>T	uc002trv.1	+	1	633	c.631C>T	c.(631-633)CCG>TCG	p.P211S		NM_207364	NP_997247	Q8TDV2	GP148_HUMAN	G protein-coupled receptor 148	211	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			skin(1)	1	Colorectal(110;0.1)					GGGCACCCAGCCGGGATGTGG	0.542													18	59					0	0	0.006122	0	0
POTEE	445582	broad.mit.edu	37	2	132021798	132021798	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:132021798G>A	uc002tsn.2	+	15	2822	c.2770G>A	c.(2770-2772)GAG>AAG	p.E924K	PLEKHB2_uc002tsh.2_Intron|POTEE_uc002tsk.2_Missense_Mutation_p.E524K|POTEE_uc002tsl.2_Missense_Mutation_p.E506K|POTEE_uc010fmy.1_Missense_Mutation_p.E388K	NM_001083538	NP_001077007	Q6S8J3	POTEE_HUMAN	protein expressed in prostate, ovary, testis,	924	Actin-like.						ATP binding				0						CCTGGACTTCGAGCAGGAGAT	0.602													27	148					0	0	0.007291	0	0
GPR39	2863	broad.mit.edu	37	2	133174768	133174768	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:133174768C>T	uc002ttl.2	+	1	622	c.153C>T	c.(151-153)ACC>ACT	p.T51T		NM_001508	NP_001499	O43194	GPR39_HUMAN	G protein-coupled receptor 39	51	Cytoplasmic (Potential).					integral to plasma membrane	G-protein coupled receptor activity|metal ion binding				0						ACAGCGCCACCATTCGGGTCA	0.532													17	42					0	0	0.004990	0	0
GPR39	2863	broad.mit.edu	37	2	133175434	133175434	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:133175434G>A	uc002ttl.2	+	1	1288	c.819G>A	c.(817-819)GAG>GAA	p.E273E		NM_001508	NP_001499	O43194	GPR39_HUMAN	G protein-coupled receptor 39	273	Cytoplasmic (Potential).					integral to plasma membrane	G-protein coupled receptor activity|metal ion binding				0						AGAGCGAAGAGAGCAGGACCG	0.622													19	63					0	0	0.012319	0	0
NCKAP5	344148	broad.mit.edu	37	2	133489315	133489315	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:133489315G>A	uc002ttp.2	-	17	5812	c.5438C>T	c.(5437-5439)TCC>TTC	p.S1813F	NCKAP5_uc002ttq.2_Missense_Mutation_p.S494F	NM_207363	NP_997246	O14513	NCKP5_HUMAN	Nck-associated protein 5 isoform 1	1813							protein binding				0						TTTACCTGAGGAAGCTGGTTT	0.507													22	49					0	0	0.014323	0	0
NCKAP5	344148	broad.mit.edu	37	2	133539967	133539967	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:133539967C>T	uc002ttp.2	-	14	4791	c.4417G>A	c.(4417-4419)GAA>AAA	p.E1473K	NCKAP5_uc002ttq.2_Intron	NM_207363	NP_997246	O14513	NCKP5_HUMAN	Nck-associated protein 5 isoform 1	1473							protein binding				0						ACCTTTTCTTCGATTGTGGGT	0.502													21	24					0	0	0.008871	0	0
TMEM163	81615	broad.mit.edu	37	2	135260567	135260567	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:135260567C>T	uc002ttx.2	-	5	526	c.460G>A	c.(460-462)GCC>ACC	p.A154T	TMEM163_uc002tty.2_Intron	NM_030923	NP_112185	Q8TC26	TM163_HUMAN	transmembrane protein 163	154	Helical; (Potential).					integral to membrane					0				BRCA - Breast invasive adenocarcinoma(221;0.154)		ATGACACAGGCTCTGCAAAAA	0.443													7	8					0	0	0.001984	0	0
ACMSD	130013	broad.mit.edu	37	2	135630121	135630121	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:135630121G>A	uc002ttz.2	+	8	826	c.759G>A	c.(757-759)ATG>ATA	p.M253I	ACMSD_uc002tua.2_Missense_Mutation_p.M195I|uc010zbe.1_Intron	NM_138326	NP_612199	Q8TDX5	ACMSD_HUMAN	aminocarboxymuconate semialdehyde decarboxylase	253					quinolinate metabolic process|tryptophan catabolic process	cytosol	aminocarboxymuconate-semialdehyde decarboxylase activity|metal ion binding			skin(1)	1				BRCA - Breast invasive adenocarcinoma(221;0.115)		ACAACCCCATGAACCCGAAGA	0.493													14	30					0	0	0.003163	0	0
ZRANB3	84083	broad.mit.edu	37	2	136023176	136023176	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:136023176G>A	uc002tum.2	-	12	1584	c.1467C>T	c.(1465-1467)TTC>TTT	p.F489F	ZRANB3_uc002tuk.2_Silent_p.F32F|ZRANB3_uc002tul.2_Silent_p.F489F	NM_032143	NP_115519	Q5FWF4	ZRAB3_HUMAN	zinc finger, RAN-binding domain containing 3	489						intracellular	ATP binding|DNA binding|endonuclease activity|helicase activity|zinc ion binding			lung(2)	2				BRCA - Breast invasive adenocarcinoma(221;0.135)		CAAACTGCAGGAAATCCCATT	0.403													10	10					0	0	0.008291	0	0
LCT	3938	broad.mit.edu	37	2	136548425	136548425	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:136548425G>A	uc002tuu.1	-	15	5149	c.5138C>T	c.(5137-5139)TCG>TTG	p.S1713L		NM_002299	NP_002290	P09848	LPH_HUMAN	lactase-phlorizin hydrolase preproprotein	1713	Extracellular (Potential).|4.|4 X approximate repeats.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|integral to plasma membrane|membrane fraction	cation binding|glycosylceramidase activity|lactase activity			ovary(7)|central_nervous_system(2)|skin(2)|pancreas(1)|lung(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.169)		GTCTGGCCACGAGCGATCTGC	0.448													9	54					0	0	0.008291	0	0
MCM6	4175	broad.mit.edu	37	2	136624252	136624252	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:136624252G>A	uc002tuw.2	-	5	738	c.662C>T	c.(661-663)CCC>CTC	p.P221L		NM_005915	NP_005906	Q14566	MCM6_HUMAN	minichromosome maintenance complex component 6	221					cell cycle checkpoint|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle	MCM complex	ATP binding|identical protein binding				0				BRCA - Breast invasive adenocarcinoma(221;0.166)	Atorvastatin(DB01076)	TAAACTGCGGGGGATACTCCC	0.463													23	47					0	0	0.007291	0	0
THSD7B	80731	broad.mit.edu	37	2	137988647	137988648	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:137988647_137988648CC>AT	uc002tva.1	+	7	1664_1665	c.1664_1665CC>AT	c.(1663-1665)CCC>CAT	p.P555H	THSD7B_uc010zbj.1_Intron|THSD7B_uc002tvb.2_Missense_Mutation_p.P445H	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		TGCCCAGTTCCCCCTCCTCCTG	0.47													8	27					0	0	0.004672	0	0
THSD7B	80731	broad.mit.edu	37	2	137990485	137990485	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:137990485C>T	uc002tva.1	+	8	1839	c.1839C>T	c.(1837-1839)CCC>CCT	p.P613P	THSD7B_uc010zbj.1_Intron|THSD7B_uc002tvb.2_Silent_p.P503P	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		AGCCATGTCCCCCTAGTCAGG	0.458													16	28					0	0	0.006122	0	0
THSD7B	80731	broad.mit.edu	37	2	138413174	138413174	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:138413174G>A	uc002tva.1	+	21	3962	c.3962G>A	c.(3961-3963)GGA>GAA	p.G1321E	THSD7B_uc010zbj.1_Intron	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		GCACTGTGTGGAGAAATGCCC	0.537													9	18					0	0	0.004482	0	0
LRP1B	53353	broad.mit.edu	37	2	140990791	140990791	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:140990791C>T	uc002tvj.1	-	91	14736	c.13764G>A	c.(13762-13764)AAG>AAA	p.K4588K		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	4588	Cytoplasmic (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TTTCTATTTTCTTTGGAAGCA	0.318										TSP Lung(27;0.18)			18	11					0	0	0.006122	0	0
LRP1B	53353	broad.mit.edu	37	2	140995765	140995765	+	Missense_Mutation	SNP	C	T	T	rs141605274		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:140995765C>T	uc002tvj.1	-	89	14488	c.13516G>A	c.(13516-13518)GAT>AAT	p.D4506N		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	4506	Cytoplasmic (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		AGACCTCCATCGTTGTGATCA	0.368										TSP Lung(27;0.18)			7	50					0	0	0.003080	0	0
LRP1B	53353	broad.mit.edu	37	2	141083357	141083357	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:141083357G>A	uc002tvj.1	-	80	13286	c.12314C>T	c.(12313-12315)TCA>TTA	p.S4105L		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	4105	Extracellular (Potential).|LDL-receptor class B 36.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		AGAGACTACTGAATTAGAGCC	0.363										TSP Lung(27;0.18)			7	19					0	0	0.001984	0	0
LRP1B	53353	broad.mit.edu	37	2	141093194	141093194	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:141093194G>A	uc002tvj.1	-	78	13078	c.12106C>T	c.(12106-12108)CCT>TCT	p.P4036S		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	4036	Extracellular (Potential).|LDL-receptor class B 34.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		CCTCTTTTAGGATTTACTGCA	0.383										TSP Lung(27;0.18)			33	62					0	0	0.012213	0	0
LRP1B	53353	broad.mit.edu	37	2	141294268	141294268	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:141294268G>A	uc002tvj.1	-	46	8496	c.7524C>T	c.(7522-7524)TCC>TCT	p.S2508S		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	2508	Extracellular (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		CGTTGCAGGAGGAATTTTTAG	0.328										TSP Lung(27;0.18)			8	16					0	0	0.003080	0	0
LRP1B	53353	broad.mit.edu	37	2	141819760	141819760	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:141819760C>T	uc002tvj.1	-	8	2068	c.1096G>A	c.(1096-1098)GAT>AAT	p.D366N	LRP1B_uc010fnl.1_Intron	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	366	Extracellular (Potential).|LDL-receptor class B 3.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		GTCTTTGAATCAATTATCCTT	0.423										TSP Lung(27;0.18)			15	53					0	0	0.002450	0	0
ACVR2A	92	broad.mit.edu	37	2	148653910	148653910	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:148653910C>T	uc002twg.2	+	3	365	c.96C>T	c.(94-96)TTC>TTT	p.F32F	ACVR2A_uc010zbn.1_Intron|ACVR2A_uc002twh.2_Silent_p.F32F	NM_001616	NP_001607	P27037	AVR2A_HUMAN	activin A receptor, type IIA precursor	32	Extracellular (Potential).				activin receptor signaling pathway|BMP signaling pathway|positive regulation of activin receptor signaling pathway|positive regulation of bone mineralization|positive regulation of erythrocyte differentiation|positive regulation of osteoblast differentiation|positive regulation of protein phosphorylation	cytoplasm|inhibin-betaglycan-ActRII complex|integral to plasma membrane	ATP binding|coreceptor activity|inhibin beta-A binding|metal ion binding|receptor signaling protein serine/threonine kinase activity|transforming growth factor beta receptor activity			stomach(8)|large_intestine(2)|lung(1)|breast(1)|kidney(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.0969)		AGTGTCTTTTCTTTAATGCTA	0.343													14	52					0	0	0.004990	0	0
MBD5	55777	broad.mit.edu	37	2	149247110	149247110	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:149247110G>A	uc002twm.3	+	12	4198	c.3210G>A	c.(3208-3210)CAG>CAA	p.Q1070Q	MBD5_uc010zbs.1_Intron|MBD5_uc010fns.2_Silent_p.Q1070Q|MBD5_uc002two.2_Silent_p.Q328Q|MBD5_uc002twp.2_Silent_p.Q120Q	NM_018328	NP_060798	Q9P267	MBD5_HUMAN	methyl-CpG binding domain protein 5	1070						chromosome|nucleus	chromatin binding|DNA binding			skin(3)|ovary(2)	5				BRCA - Breast invasive adenocarcinoma(221;0.0569)		TTGGTCAACAGGTGAAGGATG	0.502													17	53					0	0	0.004990	0	0
KIF5C	3800	broad.mit.edu	37	2	149868094	149868094	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:149868094C>T	uc010zbu.1	+	25	3146	c.2778C>T	c.(2776-2778)ATC>ATT	p.I926I	KIF5C_uc002tws.1_RNA|KIF5C_uc002twu.1_Silent_p.I208I	NM_004522	NP_004513	O60282	KIF5C_HUMAN	kinesin family member 5C	926	Globular.				microtubule-based movement|organelle organization	cytoplasm|kinesin complex|microtubule	ATP binding|microtubule motor activity			skin(1)	1				BRCA - Breast invasive adenocarcinoma(221;0.108)		CCAAGCCCATCCGCCCCGGAC	0.498													18	32					0	0	0.004990	0	0
RBM43	375287	broad.mit.edu	37	2	152112214	152112214	+	Missense_Mutation	SNP	G	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:152112214G>C	uc002txh.2	-	2	195	c.47C>G	c.(46-48)ACG>AGG	p.T16R		NM_198557	NP_940959	Q6ZSC3	RBM43_HUMAN	RNA binding motif protein 43	16	RRM.						nucleotide binding|RNA binding				0				BRCA - Breast invasive adenocarcinoma(221;0.131)		AACTACAACCGTTCTTTCAGG	0.378													7	43					0	0	0.001984	0	0
NEB	4703	broad.mit.edu	37	2	152370118	152370118	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:152370118C>T	uc010fnx.2	-	132	18305	c.18114G>A	c.(18112-18114)AGG>AGA	p.R6038R	NEB_uc002txr.2_Silent_p.R2461R|NEB_uc002txt.3_Silent_p.R543R	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	6038	Nebulin 165.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		CAGTAGCATTCCTGGCCCTCA	0.428													7	13					0	0	0.003080	0	0
NEB	4703	broad.mit.edu	37	2	152381753	152381753	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:152381753C>T	uc010fnx.2	-	123	17284	c.17093G>A	c.(17092-17094)GGA>GAA	p.G5698E	NEB_uc002txr.2_Missense_Mutation_p.G2121E|NEB_uc002txt.3_Missense_Mutation_p.G203E	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	5698					muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		GTTGGATTTTCCTTTCTCCTT	0.403													28	47					0	0	0.009535	0	0
NEB	4703	broad.mit.edu	37	2	152410392	152410392	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:152410392C>T	uc010fnx.2	-	98	14664	c.14473G>A	c.(14473-14475)GAC>AAC	p.D4825N	NEB_uc002txr.2_Missense_Mutation_p.D1248N	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	4825	Nebulin 132.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		ACTTGCAAGTCGGGGTGGCAA	0.547													26	36					0	0	0.003954	0	0
NEB	4703	broad.mit.edu	37	2	152432249	152432249	+	Missense_Mutation	SNP	T	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:152432249T>G	uc010fnx.2	-	79	12061	c.11870A>C	c.(11869-11871)GAA>GCA	p.E3957A	NEB_uc002txr.2_Missense_Mutation_p.E380A	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	3957	Nebulin 108.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		GAGATTAATTTCTGGAGTATC	0.358													72	205					0	0	0.014410	0	0
NEB	4703	broad.mit.edu	37	2	152483634	152483634	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:152483634G>A	uc010fnx.2	-	66	9691	c.9500C>T	c.(9499-9501)GCT>GTT	p.A3167V		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	3167	Nebulin 86.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		TATTTCAGCAGCTCTCTTGCA	0.483													8	47					0	0	0.004482	0	0
NEB	4703	broad.mit.edu	37	2	152507377	152507377	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:152507377C>T	uc010fnx.2	-	53	7129	c.6938G>A	c.(6937-6939)CGA>CAA	p.R2313Q		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	2313	Nebulin 61.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		AAGTTGCTTTCGGTAGCCTTG	0.388													50	93					0	0	0.014410	0	0
NEB	4703	broad.mit.edu	37	2	152527697	152527697	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:152527697C>T	uc010fnx.2	-	38	4537	c.4346G>A	c.(4345-4347)TGG>TAG	p.W1449*		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	1449	Nebulin 37.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		AATAGGGATCCATCCGATGCC	0.443													9	18					0	0	0.008291	0	0
NEB	4703	broad.mit.edu	37	2	152553214	152553214	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:152553214G>A	uc010fnx.2	-	17	1697	c.1506C>T	c.(1504-1506)TTC>TTT	p.F502F	NEB_uc010fny.1_Silent_p.F56F	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	502	Nebulin 12.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		TAACTTGGGTGAATTTTGTCT	0.458													5	36					0	0	0.000602	0	0
FMNL2	114793	broad.mit.edu	37	2	153475652	153475652	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:153475652C>T	uc002tye.2	+	14	1974	c.1607C>T	c.(1606-1608)TCA>TTA	p.S536L	FMNL2_uc010fob.2_5'Flank|FMNL2_uc002tyf.2_5'Flank	NM_052905	NP_443137	Q96PY5	FMNL2_HUMAN	formin-like 2	536	Pro-rich.				actin cytoskeleton organization	cytoplasm	actin binding|Rho GTPase binding			central_nervous_system(2)|ovary(1)	3						CTGCCTCCCTCATCAGACACA	0.458													6	19					0	0	0.001984	0	0
GALNT13	114805	broad.mit.edu	37	2	155099242	155099242	+	Silent	SNP	G	A	A	rs142707218		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:155099242G>A	uc002tyr.3	+	6	1077	c.510G>A	c.(508-510)GTG>GTA	p.V170V	GALNT13_uc002tyt.3_Silent_p.V170V|GALNT13_uc010foc.1_5'UTR	NM_052917	NP_443149	Q8IUC8	GLT13_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	170	Lumenal (Potential).|Catalytic subdomain A.					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)|pancreas(2)|central_nervous_system(1)|skin(1)	6						AGAATTACGTGAAAAATTTAG	0.353													8	15					0	0	0.006214	0	0
GALNT13	114805	broad.mit.edu	37	2	155265588	155265588	+	Silent	SNP	A	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:155265588A>T	uc002tyr.3	+	11	1956	c.1389A>T	c.(1387-1389)GGA>GGT	p.G463G	GALNT13_uc002tyt.3_Silent_p.G463G|GALNT13_uc010foc.1_Silent_p.G282G|GALNT13_uc010fod.2_Silent_p.G216G	NM_052917	NP_443149	Q8IUC8	GLT13_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	463	Ricin B-type lectin.|Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)|pancreas(2)|central_nervous_system(1)|skin(1)	6						GTATGGGAGGAAATCAGGTAA	0.358													13	55					0	0	0.003163	0	0
GALNT13	114805	broad.mit.edu	37	2	155295165	155295165	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:155295165G>A	uc002tyr.3	+	12	2024	c.1457G>A	c.(1456-1458)AGA>AAA	p.R486K	GALNT13_uc002tyt.3_Missense_Mutation_p.R486K|GALNT13_uc010fod.2_Splice_Site_p.T219_splice|uc002tyu.1_Intron	NM_052917	NP_443149	Q8IUC8	GLT13_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	486	Ricin B-type lectin.|Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)|pancreas(2)|central_nervous_system(1)|skin(1)	6						GATGTTTCTAGACTCAATGGA	0.318													27	33					0	0	0.009535	0	0
KCNJ3	3760	broad.mit.edu	37	2	155555701	155555701	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:155555701C>T	uc002tyv.1	+	1	609	c.414C>T	c.(412-414)ATC>ATT	p.I138I	KCNJ3_uc010zce.1_Silent_p.I138I	NM_002239	NP_002230	P48549	IRK3_HUMAN	potassium inwardly-rectifying channel J3	138					synaptic transmission	voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding			upper_aerodigestive_tract(1)|pancreas(1)	2					Halothane(DB01159)	TCTTCTTCATCGAGACGGAGG	0.567													6	25					0	0	0.001168	0	0
KCNJ3	3760	broad.mit.edu	37	2	155711558	155711558	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:155711558C>T	uc002tyv.1	+	3	1434	c.1239C>T	c.(1237-1239)CCC>CCT	p.P413P	KCNJ3_uc010zce.1_3'UTR	NM_002239	NP_002230	P48549	IRK3_HUMAN	potassium inwardly-rectifying channel J3	413	Cytoplasmic (By similarity).				synaptic transmission	voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding			upper_aerodigestive_tract(1)|pancreas(1)	2					Halothane(DB01159)	AAGACTTTCCCAAAAAACTCT	0.388													24	60					0	0	0.014323	0	0
KCNJ3	3760	broad.mit.edu	37	2	155711578	155711578	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:155711578G>A	uc002tyv.1	+	3	1454	c.1259G>A	c.(1258-1260)AGT>AAT	p.S420N	KCNJ3_uc010zce.1_3'UTR	NM_002239	NP_002230	P48549	IRK3_HUMAN	potassium inwardly-rectifying channel J3	420	Cytoplasmic (By similarity).				synaptic transmission	voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding			upper_aerodigestive_tract(1)|pancreas(1)	2					Halothane(DB01159)	TTGAGGATGAGTTCTACAACT	0.393													36	58					0	0	0.004878	0	0
GALNT5	11227	broad.mit.edu	37	2	158156154	158156154	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:158156154G>A	uc002tzg.2	+	6	2347	c.2092G>A	c.(2092-2094)GAA>AAA	p.E698K	GALNT5_uc010zci.1_RNA	NM_014568	NP_055383	Q7Z7M9	GALT5_HUMAN	N-acetylgalactosaminyltransferase 5	698	Catalytic subdomain B.|Lumenal (Potential).				glycosaminoglycan biosynthetic process	Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			breast(3)|skin(1)	4						TTGGGGTGGGGAAAATATGGA	0.378													12	31					0	0	0.002450	0	0
LY75	4065	broad.mit.edu	37	2	160738809	160738809	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:160738809C>T	uc002ubc.3	-	7	1141	c.1072G>A	c.(1072-1074)GAT>AAT	p.D358N	LY75_uc002ubb.3_Missense_Mutation_p.D358N|LY75_uc010fos.2_Missense_Mutation_p.D358N|LY75_uc010fot.1_Missense_Mutation_p.D358N	NM_002349	NP_002340	O60449	LY75_HUMAN	lymphocyte antigen 75 precursor	358	Extracellular (Potential).				endocytosis|immune response|inflammatory response	integral to plasma membrane	receptor activity|sugar binding				0				COAD - Colon adenocarcinoma(177;0.132)		CAGCGGGTATCTGAGTATGTC	0.388													11	68					0	0	0.013537	0	0
PLA2R1	22925	broad.mit.edu	37	2	160808060	160808060	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:160808060C>T	uc002ube.1	-	24	3538	c.3331G>A	c.(3331-3333)GAT>AAT	p.D1111N	PLA2R1_uc010zcp.1_Missense_Mutation_p.D1111N|PLA2R1_uc002ubf.2_Missense_Mutation_p.D1111N	NM_007366	NP_031392	Q13018	PLA2R_HUMAN	phospholipase A2 receptor 1 isoform 1 precursor	1111	Extracellular (Potential).				endocytosis	extracellular space|integral to plasma membrane	receptor activity|sugar binding			skin(2)|ovary(1)	3						GGATACATATCAGATGTATTT	0.363													15	38					0	0	0.004007	0	0
PLA2R1	22925	broad.mit.edu	37	2	160824073	160824073	+	Nonsense_Mutation	SNP	C	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:160824073C>A	uc002ube.1	-	20	3088	c.2881G>T	c.(2881-2883)GGA>TGA	p.G961*	PLA2R1_uc010zcp.1_Nonsense_Mutation_p.G961*|PLA2R1_uc002ubf.2_Nonsense_Mutation_p.G961*	NM_007366	NP_031392	Q13018	PLA2R_HUMAN	phospholipase A2 receptor 1 isoform 1 precursor	961	Extracellular (Potential).				endocytosis	extracellular space|integral to plasma membrane	receptor activity|sugar binding			skin(2)|ovary(1)	3						TATAGCCATCCTTTGGGACAC	0.343													22	52					1.85244e-09	1.99294e-09	0.003330	1	0
IFIH1	64135	broad.mit.edu	37	2	163134828	163134828	+	Missense_Mutation	SNP	T	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:163134828T>A	uc002uce.2	-	9	1874	c.1652A>T	c.(1651-1653)AAA>ATA	p.K551I		NM_022168	NP_071451	Q9BYX4	IFIH1_HUMAN	interferon induced with helicase C domain 1	551					detection of virus|innate immune response|interspecies interaction between organisms|negative regulation of type I interferon production|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|regulation of apoptosis	cytosol|nucleus	ATP binding|DNA binding|double-stranded RNA binding|helicase activity|protein binding|ribonucleoprotein binding|zinc ion binding			ovary(1)	1						AAGTTTCTCTTTAAATGGATC	0.279													17	24					0	0	0.008871	0	0
SCN3A	6328	broad.mit.edu	37	2	165947098	165947098	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:165947098G>A	uc002ucx.2	-	28	6057	c.5565C>T	c.(5563-5565)GCC>GCT	p.A1855A	SCN3A_uc010zcy.1_Silent_p.A338A|SCN3A_uc002ucy.2_Silent_p.A1806A|SCN3A_uc002ucz.2_Silent_p.A1806A	NM_006922	NP_008853	Q9NY46	SCN3A_HUMAN	sodium channel, voltage-gated, type III, alpha	1855						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10					Lamotrigine(DB00555)	GCTTTGTAAAGGCAAATAAAA	0.458													25	29					0	0	0.003954	0	0
SCN3A	6328	broad.mit.edu	37	2	165947222	165947222	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:165947222G>A	uc002ucx.2	-	28	5933	c.5441C>T	c.(5440-5442)TCT>TTT	p.S1814F	SCN3A_uc010zcy.1_Missense_Mutation_p.S297F|SCN3A_uc002ucy.2_Missense_Mutation_p.S1765F|SCN3A_uc002ucz.2_Missense_Mutation_p.S1765F	NM_006922	NP_008853	Q9NY46	SCN3A_HUMAN	sodium channel, voltage-gated, type III, alpha	1814						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10					Lamotrigine(DB00555)	TGCAAAATCAGAGAGTTTAGA	0.483													20	78					0	0	0.014323	0	0
SCN3A	6328	broad.mit.edu	37	2	165984417	165984417	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:165984417G>A	uc002ucx.2	-	18	3609	c.3117C>T	c.(3115-3117)ATC>ATT	p.I1039I	SCN3A_uc002ucy.2_Silent_p.I990I|SCN3A_uc002ucz.2_Silent_p.I990I|SCN3A_uc002uda.1_Silent_p.I859I|SCN3A_uc002udb.1_Silent_p.I859I	NM_006922	NP_008853	Q9NY46	SCN3A_HUMAN	sodium channel, voltage-gated, type III, alpha	1039						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10					Lamotrigine(DB00555)	TGCCTTCATGGATTTCTATAA	0.358													5	58					0	0	0.000602	0	0
SCN3A	6328	broad.mit.edu	37	2	165984493	165984493	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:165984493C>T	uc002ucx.2	-	18	3533	c.3041G>A	c.(3040-3042)GGA>GAA	p.G1014E	SCN3A_uc002ucy.2_Missense_Mutation_p.G965E|SCN3A_uc002ucz.2_Missense_Mutation_p.G965E|SCN3A_uc002uda.1_Missense_Mutation_p.G834E|SCN3A_uc002udb.1_Missense_Mutation_p.G834E	NM_006922	NP_008853	Q9NY46	SCN3A_HUMAN	sodium channel, voltage-gated, type III, alpha	1014						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10					Lamotrigine(DB00555)	ATAATCAATTCCCTTTTGCAT	0.363													20	26					0	0	0.008871	0	0
SCN2A	6326	broad.mit.edu	37	2	166210825	166210825	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:166210825G>A	uc002udc.2	+	17	3333	c.3043G>A	c.(3043-3045)GAT>AAT	p.D1015N	SCN2A_uc002udd.2_Missense_Mutation_p.D1015N|SCN2A_uc002ude.2_Missense_Mutation_p.D1015N	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	1015					myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	GAAAGGAATCGATTTTGTTAA	0.348													36	51					0	0	0.003755	0	0
SCN1A	6323	broad.mit.edu	37	2	166900244	166900244	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:166900244G>A	uc010zcz.1	-	11	1996	c.1978C>T	c.(1978-1980)CCT>TCT	p.P660S	SCN1A_uc002udo.3_Missense_Mutation_p.P529S|SCN1A_uc010fpk.2_Intron	NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	660						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	GGCGATGTAGGAACTGAAGGT	0.488													10	48					0	0	0.008291	0	0
SCN1A	6323	broad.mit.edu	37	2	166929916	166929916	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:166929916C>T	uc010zcz.1	-	1	234	c.216G>A	c.(214-216)ATG>ATA	p.M72I		NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	72						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	GCTCTGACACCATCTCTGGAG	0.428													56	66					0	0	0.014410	0	0
SCN9A	6335	broad.mit.edu	37	2	167056260	167056260	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:167056260A>G	uc010fpl.2	-	27	5197	c.4856T>C	c.(4855-4857)ATC>ACC	p.I1619T	uc002udp.2_RNA	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	1630	Helical; Voltage-sensor; Name=S4 of repeat IV; (Potential).|IV.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	CAGCGTGCGGATCCCCTTTGC	0.498													31	53					0	0	0.008361	0	0
SCN7A	6332	broad.mit.edu	37	2	167298046	167298046	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:167298046C>T	uc002udu.1	-	14	2144	c.2017G>A	c.(2017-2019)GAC>AAC	p.D673N	SCN7A_uc010fpm.1_RNA	NM_002976	NP_002967	Q01118	SCN7A_HUMAN	sodium channel, voltage-gated, type VII, alpha	673					muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			large_intestine(1)	1						TGGAAAAAGTCATGCATGTGC	0.468													10	37					0	0	0.010729	0	0
SCN7A	6332	broad.mit.edu	37	2	167319026	167319026	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:167319026C>T	uc002udu.1	-	9	1083	c.956G>A	c.(955-957)GGA>GAA	p.G319E	SCN7A_uc010fpm.1_RNA	NM_002976	NP_002967	Q01118	SCN7A_HUMAN	sodium channel, voltage-gated, type VII, alpha	319					muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			large_intestine(1)	1						ACACACATATCCTTCAGGACA	0.378													5	15					0	0	0.004482	0	0
SCN7A	6332	broad.mit.edu	37	2	167322339	167322339	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:167322339C>T	uc002udu.1	-	7	950	c.823G>A	c.(823-825)GAA>AAA	p.E275K	SCN7A_uc010fpm.1_RNA	NM_002976	NP_002967	Q01118	SCN7A_HUMAN	sodium channel, voltage-gated, type VII, alpha	275					muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			large_intestine(1)	1						GTTTCATTTTCATTCTCTTGG	0.373													11	75					0	0	0.001855	0	0
XIRP2	129446	broad.mit.edu	37	2	168102229	168102229	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:168102229G>A	uc002udx.2	+	8	4345	c.4327G>A	c.(4327-4329)GAA>AAA	p.E1443K	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.E1268K|XIRP2_uc010fpq.2_Missense_Mutation_p.E1221K|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_5'Flank	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	1268					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						AAGTGTCAATGAAATACAAAA	0.328													9	11					0	0	0.006214	0	0
XIRP2	129446	broad.mit.edu	37	2	168103356	168103357	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:168103356_168103357GG>AT	uc002udx.2	+	8	5472_5473	c.5454_5455GG>AT	c.(5452-5457)AAGGTT>AAATTT	p.V1819F	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.V1644F|XIRP2_uc010fpq.2_Missense_Mutation_p.V1597F|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_5'Flank	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	1644					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						ACACAGTTAAGGTTTTTATGAC	0.406													10	63					0	0	0.004672	0	0
XIRP2	129446	broad.mit.edu	37	2	168104641	168104641	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:168104641C>T	uc002udx.2	+	8	6757	c.6739C>T	c.(6739-6741)CAC>TAC	p.H2247Y	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.H2072Y|XIRP2_uc010fpq.2_Missense_Mutation_p.H2025Y|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	2072					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						GACTGATGTTCACTTGAAAAG	0.383													9	12					0	0	0.008291	0	0
XIRP2	129446	broad.mit.edu	37	2	168107877	168107877	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:168107877C>T	uc002udx.2	+	8	9993	c.9975C>T	c.(9973-9975)TTC>TTT	p.F3325F	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Silent_p.F3150F|XIRP2_uc010fpq.2_Silent_p.F3103F|XIRP2_uc010fpr.2_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	3150					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						CTGAAAATTTCGTGAATGACC	0.448													19	53					0	0	0.006122	0	0
XIRP2	129446	broad.mit.edu	37	2	168108325	168108325	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:168108325G>A	uc002udx.2	+	8	10441	c.10423G>A	c.(10423-10425)GAA>AAA	p.E3475K	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.E3300K|XIRP2_uc010fpq.2_Missense_Mutation_p.E3253K|XIRP2_uc010fpr.2_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	3300					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						TTCACCTAAAGAAGTAAGAAA	0.428													9	26					0	0	0.004482	0	0
B3GALT1	8708	broad.mit.edu	37	2	168725897	168725897	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:168725897C>T	uc002udz.1	+	2	699	c.348C>T	c.(346-348)TTC>TTT	p.F116F		NM_020981	NP_066191	Q9Y5Z6	B3GT1_HUMAN	UDP-Gal:betaGlcNAc beta	116	Lumenal (Potential).				lipid glycosylation|protein glycosylation	Golgi membrane|integral to membrane	UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity			ovary(2)|pancreas(1)|skin(1)	4						CCACCCTGTTCCTCCTGGGCA	0.488													15	26					0	0	0.002450	0	0
STK39	27347	broad.mit.edu	37	2	168812061	168812061	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:168812061G>A	uc002uea.2	-	18	1743	c.1583C>T	c.(1582-1584)TCG>TTG	p.S528L		NM_013233	NP_037365	Q9UEW8	STK39_HUMAN	serine threonine kinase 39 (STE20/SPS1 homolog,	528					response to stress	cytoplasm|nucleus	ATP binding|protein binding|receptor signaling protein serine/threonine kinase activity			central_nervous_system(1)|skin(1)	2						AGGAATCTCCGACCCATCACA	0.493													3	8					0	0	0.009096	0	0
ABCB11	8647	broad.mit.edu	37	2	169780224	169780224	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:169780224C>T	uc002ueo.1	-	28	4000	c.3874G>A	c.(3874-3876)GGG>AGG	p.G1292R	ABCB11_uc010zda.1_Missense_Mutation_p.G710R|ABCB11_uc010zdb.1_Missense_Mutation_p.G768R	NM_003742	NP_003733	O95342	ABCBB_HUMAN	ATP-binding cassette, sub-family B (MDR/TAP),	1292	Cytoplasmic (Potential).|ABC transporter 2.				bile acid biosynthetic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|bile acid-exporting ATPase activity|canalicular bile acid transmembrane transporter activity|sodium-exporting ATPase activity, phosphorylative mechanism			ovary(2)|large_intestine(2)|breast(1)	5					Adenosine triphosphate(DB00171)|Bosentan(DB00559)|Glibenclamide(DB01016)	ATCACCACCCCCTGTGCCATG	0.527													18	32					0	0	0.006122	0	0
ABCB11	8647	broad.mit.edu	37	2	169792852	169792852	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:169792852C>T	uc002ueo.1	-	22	2828	c.2702G>A	c.(2701-2703)AGC>AAC	p.S901N	ABCB11_uc010zda.1_Missense_Mutation_p.S343N|ABCB11_uc010zdb.1_Missense_Mutation_p.S377N	NM_003742	NP_003733	O95342	ABCBB_HUMAN	ATP-binding cassette, sub-family B (MDR/TAP),	901	ABC transmembrane type-1 2.|Helical; (Potential).				bile acid biosynthetic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|bile acid-exporting ATPase activity|canalicular bile acid transmembrane transporter activity|sodium-exporting ATPase activity, phosphorylative mechanism			ovary(2)|large_intestine(2)|breast(1)	5					Adenosine triphosphate(DB00171)|Bosentan(DB00559)|Glibenclamide(DB01016)	GATGACCAGGCTCAGCTTCCA	0.522													15	28					0	0	0.002450	0	0
ABCB11	8647	broad.mit.edu	37	2	169850324	169850324	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:169850324G>A	uc002ueo.1	-	8	806	c.680C>T	c.(679-681)ACC>ATC	p.T227I		NM_003742	NP_003733	O95342	ABCBB_HUMAN	ATP-binding cassette, sub-family B (MDR/TAP),	227	ABC transmembrane type-1 1.|Helical; (Potential).				bile acid biosynthetic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|bile acid-exporting ATPase activity|canalicular bile acid transmembrane transporter activity|sodium-exporting ATPase activity, phosphorylative mechanism			ovary(2)|large_intestine(2)|breast(1)	5					Adenosine triphosphate(DB00171)|Bosentan(DB00559)|Glibenclamide(DB01016)	ACCACAGATGGTCGAGGTCAT	0.428													6	8					0	0	0.001168	0	0
LRP2	4036	broad.mit.edu	37	2	169995847	169995847	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:169995847G>A	uc002ues.2	-	74	13515	c.13302C>T	c.(13300-13302)ATC>ATT	p.I4434I		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	4434	Helical; (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	CAATTACGACGATCAAGAGGA	0.507													18	23					0	0	0.006122	0	0
LRP2	4036	broad.mit.edu	37	2	170038771	170038771	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:170038771C>T	uc002ues.2	-	51	10117	c.9904G>A	c.(9904-9906)GGA>AGA	p.G3302R		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	3302	LDL-receptor class B 31.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	CGGCGGTGTCCACCATTGAGG	0.512													44	81					0	0	0.009718	0	0
LRP2	4036	broad.mit.edu	37	2	170058349	170058349	+	Silent	SNP	G	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:170058349G>T	uc002ues.2	-	44	8454	c.8241C>A	c.(8239-8241)ACC>ACA	p.T2747T		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	2747	Extracellular (Potential).|LDL-receptor class A 17.				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	CATTGGCACAGGTGAAGGCTG	0.448													24	22					5.45024e-15	5.88343e-15	0.003330	1	0
LRP2	4036	broad.mit.edu	37	2	170070350	170070350	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:170070350G>A	uc002ues.2	-	36	6070	c.5857C>T	c.(5857-5859)CGA>TGA	p.R1953*		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	1953	LDL-receptor class B 18.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	AGGATCATTCGATCTGTTCCA	0.363													12	34					0	0	0.013537	0	0
LRP2	4036	broad.mit.edu	37	2	170097749	170097749	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:170097749G>A	uc002ues.2	-	25	4007	c.3794C>T	c.(3793-3795)GCC>GTC	p.A1265V	LRP2_uc010zdf.1_Missense_Mutation_p.A1128V	NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	1265	Extracellular (Potential).|LDL-receptor class A 13.				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	GGGGACACAGGCATTGTGCTC	0.502													25	63					0	0	0.005443	0	0
KBTBD10	10324	broad.mit.edu	37	2	170367288	170367288	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:170367288C>T	uc002ueu.1	+	1	1077	c.1000C>T	c.(1000-1002)CCC>TCC	p.P334S	KBTBD10_uc010zdh.1_Intron	NM_006063	NP_006054	O60662	KBTBA_HUMAN	kelch repeat and BTB (POZ) domain containing 10	334					striated muscle contraction	centrosome|nucleolus|plasma membrane|pseudopodium|ruffle					0						TGAGCAGATTCCCAGAAATCA	0.423													9	65					0	0	0.008291	0	0
C2orf77	129881	broad.mit.edu	37	2	170506914	170506914	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:170506914C>T	uc002ufe.2	-	7	1171	c.1077G>A	c.(1075-1077)TGG>TGA	p.W359*		NM_001085447	NP_001078916	Q0VFZ6	CB077_HUMAN	hypothetical protein LOC129881	359	Potential.										0						CTCTTTTTTCCCATTCAGCCT	0.313													5	20					0	0	0.000602	0	0
UBR3	130507	broad.mit.edu	37	2	170917834	170917834	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:170917834C>T	uc010zdi.1	+	35	4900	c.4900C>T	c.(4900-4902)CCT>TCT	p.P1634S	UBR3_uc002ufr.3_RNA|UBR3_uc010fqa.2_Missense_Mutation_p.P455S|UBR3_uc002uft.3_Missense_Mutation_p.P491S|UBR3_uc010zdj.1_Missense_Mutation_p.P325S|UBR3_uc002ufu.3_Missense_Mutation_p.P140S	NM_172070	NP_742067	Q6ZT12	UBR3_HUMAN	E3 ubiquitin-protein ligase UBR3	1634					sensory perception of smell|suckling behavior|ubiquitin-dependent protein catabolic process	integral to membrane	ubiquitin-protein ligase activity|zinc ion binding				0						TTAGGTTAACCCTATTGCTTG	0.338													27	77					0	0	0.007291	0	0
MYO3B	140469	broad.mit.edu	37	2	171358335	171358335	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:171358335A>G	uc002ufy.2	+	28	3473	c.3330A>G	c.(3328-3330)ATA>ATG	p.I1110M	MYO3B_uc002ufv.2_Missense_Mutation_p.I1097M|MYO3B_uc010fqb.1_Missense_Mutation_p.I1097M|MYO3B_uc002ufz.2_Intron|MYO3B_uc002ufw.2_RNA|MYO3B_uc002ufx.2_Intron|MYO3B_uc002ugb.2_Intron	NM_138995	NP_620482	Q8WXR4	MYO3B_HUMAN	myosin IIIB isoform 2	1110	IQ 2.				response to stimulus|visual perception	cytoplasm|myosin complex	actin binding|ATP binding|motor activity|protein serine/threonine kinase activity			lung(8)|ovary(6)|skin(4)|central_nervous_system(1)	19						TTAAGAAAATAAGCAACAGAA	0.358													7	25					0	0	0.006214	0	0
GAD1	2571	broad.mit.edu	37	2	171702044	171702044	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:171702044C>T	uc002ugi.2	+	8	1202	c.780C>T	c.(778-780)ATC>ATT	p.I260I		NM_000817	NP_000808	Q99259	DCE1_HUMAN	glutamate decarboxylase 1 isoform GAD67	260					glutamate decarboxylation to succinate|neurotransmitter biosynthetic process|neurotransmitter secretion|protein-pyridoxal-5-phosphate linkage	clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|plasma membrane	glutamate decarboxylase activity|protein binding|pyridoxal phosphate binding			ovary(1)	1					L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)	TGTACAGCATCATGGCTGCTC	0.512													21	66					0	0	0.003330	0	0
GORASP2	26003	broad.mit.edu	37	2	171822366	171822366	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:171822366C>T	uc002ugk.2	+	10	1225	c.1085C>T	c.(1084-1086)TCC>TTC	p.S362F	GORASP2_uc002ugj.2_Missense_Mutation_p.S294F|GORASP2_uc010zdl.1_Missense_Mutation_p.S374F|GORASP2_uc010zdm.1_Missense_Mutation_p.S318F|GORASP2_uc002ugl.2_Missense_Mutation_p.S294F|GORASP2_uc002ugm.2_Missense_Mutation_p.S144F	NM_015530	NP_056345	Q9H8Y8	GORS2_HUMAN	golgi reassembly stacking protein 2	362	Pro-rich.					Golgi membrane				breast(1)|central_nervous_system(1)	2						CCCCTGCCATCCGAGTTCCTC	0.582													24	38					0	0	0.005443	0	0
SLC25A12	8604	broad.mit.edu	37	2	172700971	172700971	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:172700971G>A	uc002uhh.2	-	5	462	c.373C>T	c.(373-375)CCT>TCT	p.P125S	SLC25A12_uc010fqh.2_Missense_Mutation_p.P18S|SLC25A12_uc010zdv.1_RNA	NM_003705	NP_003696	O75746	CMC1_HUMAN	solute carrier family 25, member 12	125	EF-hand 3.				gluconeogenesis|malate-aspartate shuttle|response to calcium ion	integral to membrane|mitochondrial inner membrane	calcium ion binding|L-aspartate transmembrane transporter activity|L-glutamate transmembrane transporter activity|protein binding				0			OV - Ovarian serous cystadenocarcinoma(117;0.216)		L-Aspartic Acid(DB00128)	CAGTTAAAAGGGATATGATGA	0.328													13	42					0	0	0.001855	0	0
ZAK	51776	broad.mit.edu	37	2	174131021	174131021	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:174131021C>T	uc002uhz.2	+	20	2146	c.1946C>T	c.(1945-1947)TCC>TTC	p.S649F	uc002uib.2_Intron	NM_016653	NP_057737	Q9NYL2	MLTK_HUMAN	MLK-related kinase isoform 1	649					activation of JUN kinase activity|activation of MAPKK activity|cell cycle arrest|cell death|cell differentiation|cell proliferation|DNA damage checkpoint|positive regulation of apoptosis|response to radiation	cytoplasm|nucleus	ATP binding|identical protein binding|magnesium ion binding|MAP kinase kinase kinase activity|protein binding			lung(3)|stomach(1)|ovary(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.176)			AACTTCTCTTCCCTACATCTC	0.483													13	38					0	0	0.013537	0	0
WIPF1	7456	broad.mit.edu	37	2	175436886	175436887	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:175436886_175436887CC>TT	uc002uiy.2	-	6	978_979	c.646_647GG>AA	c.(646-648)GGG>AAG	p.G216K	uc002uiw.2_Intron|uc002uix.1_Intron|WIPF1_uc002uja.2_Missense_Mutation_p.G216K|WIPF1_uc010fqt.1_Missense_Mutation_p.G216K|WIPF1_uc002ujc.1_Missense_Mutation_p.G216K|WIPF1_uc002uiz.2_Missense_Mutation_p.G216K|WIPF1_uc002ujb.1_Missense_Mutation_p.G216K|WIPF1_uc010zep.1_Missense_Mutation_p.G216K	NM_003387	NP_003378	O43516	WIPF1_HUMAN	WAS/WASL interacting protein family, member 1	216					actin polymerization or depolymerization|protein complex assembly	cytoplasmic membrane-bounded vesicle	actin binding|profilin binding			ovary(1)|skin(1)	2						AGGAGTGGGCCCGGGGCTGGGC	0.644													17	85					0	0	0.004672	0	0
CHRNA1	1134	broad.mit.edu	37	2	175622373	175622373	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:175622373G>A	uc002ujd.2	-	5	418	c.340C>T	c.(340-342)CCA>TCA	p.P114S	uc002uiw.2_Intron|CHRNA1_uc002uje.2_Missense_Mutation_p.P89S|CHRNA1_uc002ujf.3_Missense_Mutation_p.P89S	NM_001039523	NP_001034612	P02708	ACHA_HUMAN	nicotinic cholinergic receptor alpha 1 isoform a	114	Extracellular.				muscle cell homeostasis|neuromuscular junction development|neuromuscular process|neuromuscular synaptic transmission|neuron homeostasis|regulation of action potential in neuron|skeletal muscle contraction|skeletal muscle tissue growth	cell junction|cell surface|neuromuscular junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity			ovary(2)|central_nervous_system(1)|skin(1)	4						TAGTCATCTGGATTCCATTTT	0.393													17	36					0	0	0.008871	0	0
CHN1	1123	broad.mit.edu	37	2	175677170	175677170	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:175677170G>A	uc002uji.2	-	9	1283	c.753C>T	c.(751-753)GTC>GTT	p.V251V	CHN1_uc010zeq.1_Silent_p.V225V|CHN1_uc002ujj.2_Silent_p.V26V|CHN1_uc002ujg.2_Silent_p.V126V	NM_001822	NP_001813	P15882	CHIN_HUMAN	chimerin (chimaerin) 1 isoform a	251	Phorbol-ester/DAG-type.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|metal ion binding|SH3/SH2 adaptor activity			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.226)			AGTCATTTGGGACCATCTTGG	0.403			T	TAF15	extraskeletal myxoid chondrosarcoma								13	41					0	0	0.002450	0	0
PDE11A	50940	broad.mit.edu	37	2	178936631	178936631	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:178936631C>T	uc002ulq.2	-	1	852	c.534G>A	c.(532-534)TCG>TCA	p.S178S	PDE11A_uc002ulr.2_Intron|PDE11A_uc002ult.1_Intron	NM_016953	NP_058649	Q9HCR9	PDE11_HUMAN	phosphodiesterase 11A isoform 4	178					platelet activation|signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding			ovary(3)|large_intestine(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.00121)|Epithelial(96;0.00455)|all cancers(119;0.02)			GATTCACTCTCGATTCCAGCA	0.532									Primary_Pigmented_Nodular_Adrenocortical_Disease_Familial				18	42					0	0	0.007413	0	0
PDE11A	50940	broad.mit.edu	37	2	178936771	178936771	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:178936771G>A	uc002ulq.2	-	1	712	c.394C>T	c.(394-396)CAC>TAC	p.H132Y	PDE11A_uc002ulr.2_Intron|PDE11A_uc002ult.1_Intron	NM_016953	NP_058649	Q9HCR9	PDE11_HUMAN	phosphodiesterase 11A isoform 4	132					platelet activation|signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding			ovary(3)|large_intestine(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.00121)|Epithelial(96;0.00455)|all cancers(119;0.02)			CTGTTCACGTGGATGGCCTTG	0.617									Primary_Pigmented_Nodular_Adrenocortical_Disease_Familial				20	66					0	0	0.014323	0	0
OSBPL6	114880	broad.mit.edu	37	2	179238682	179238682	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:179238682C>T	uc002ulx.2	+	15	1839	c.1461C>T	c.(1459-1461)TCC>TCT	p.S487S	OSBPL6_uc002ulw.2_Silent_p.S420S|OSBPL6_uc002uly.2_Silent_p.S512S|OSBPL6_uc010zfe.1_Silent_p.S456S|OSBPL6_uc002ulz.2_Silent_p.S451S|OSBPL6_uc002uma.2_Silent_p.S491S	NM_032523	NP_115912	Q9BZF3	OSBL6_HUMAN	oxysterol-binding protein-like protein 6 isoform	487				S -> P (in Ref. 4; BAC04248).	lipid transport		lipid binding			pancreas(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.00578)|Epithelial(96;0.00847)|all cancers(119;0.0335)			GCCGCCTCTCCATGTCAGAGT	0.488													20	43					0	0	0.010504	0	0
TTN	7273	broad.mit.edu	37	2	179395822	179395823	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:179395822_179395823GG>AA	uc010zfg.1	-	307	98039_98040	c.97815_97816CC>TT	c.(97813-97818)GCCCGC>GCTTGC	p.R32606C	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.R26301C|TTN_uc010zfi.1_Missense_Mutation_p.R26234C|TTN_uc010zfj.1_Missense_Mutation_p.R26109C|TTN_uc002umq.2_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	33533							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ACTTGGTGGCGGGCAGAAGTAC	0.51													33	167					0	0	0.004672	0	0
TTN	7273	broad.mit.edu	37	2	179401219	179401219	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:179401219C>T	uc010zfg.1	-	306	92775	c.92551G>A	c.(92551-92553)GAT>AAT	p.D30851N	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.D24546N|TTN_uc010zfi.1_Missense_Mutation_p.D24479N|TTN_uc010zfj.1_Missense_Mutation_p.D24354N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	31778							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GCACCTCCATCACTGGCAGGT	0.403													22	57					0	0	0.002780	0	0
TTN	7273	broad.mit.edu	37	2	179403727	179403727	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:179403727C>T	uc010zfg.1	-	302	91455	c.91231G>A	c.(91231-91233)GGC>AGC	p.G30411S	uc002umo.2_RNA|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.G24106S|TTN_uc010zfi.1_Missense_Mutation_p.G24039S|TTN_uc010zfj.1_Missense_Mutation_p.G23914S	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	31338							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCACTCAGGCCAACATCATTC	0.463													10	27					0	0	0.010729	0	0
TTN	7273	broad.mit.edu	37	2	179404821	179404821	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:179404821C>T	uc010zfg.1	-	300	90592	c.90368G>A	c.(90367-90369)GGA>GAA	p.G30123E	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.G23818E|TTN_uc010zfi.1_Missense_Mutation_p.G23751E|TTN_uc010zfj.1_Missense_Mutation_p.G23626E	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	31050							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTTGACTGTTCCTGGTACCTC	0.468													24	96					0	0	0.003954	0	0
TTN	7273	broad.mit.edu	37	2	179416365	179416365	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:179416365G>A	uc010zfg.1	-	284	83782	c.83558C>T	c.(83557-83559)TCT>TTT	p.S27853F	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.S21548F|TTN_uc010zfi.1_Missense_Mutation_p.S21481F|TTN_uc010zfj.1_Missense_Mutation_p.S21356F	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	28780							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ACCTACTGGAGAAACAGCTAA	0.368													6	22					0	0	0.001168	0	0
TTN	7273	broad.mit.edu	37	2	179416711	179416711	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:179416711C>T	uc010zfg.1	-	284	83436	c.83212G>A	c.(83212-83214)GGA>AGA	p.G27738R	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.G21433R|TTN_uc010zfi.1_Missense_Mutation_p.G21366R|TTN_uc010zfj.1_Missense_Mutation_p.G21241R	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	28665							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGGCTGACTCCGTATCTGTTT	0.438													15	52					0	0	0.002450	0	0
TTN	7273	broad.mit.edu	37	2	179423307	179423307	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:179423307G>A	uc010zfg.1	-	276	79399	c.79175C>T	c.(79174-79176)TCC>TTC	p.S26392F	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.S20087F|TTN_uc010zfi.1_Missense_Mutation_p.S20020F|TTN_uc010zfj.1_Missense_Mutation_p.S19895F	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	27319							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CCAGGTCAGGGAAACACTGTC	0.388													7	23					0	0	0.001984	0	0
TTN	7273	broad.mit.edu	37	2	179424620	179424620	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:179424620C>T	uc010zfg.1	-	275	78759	c.78535G>A	c.(78535-78537)GAA>AAA	p.E26179K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E19874K|TTN_uc010zfi.1_Missense_Mutation_p.E19807K|TTN_uc010zfj.1_Missense_Mutation_p.E19682K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	27106							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCTTCTCTTTCCTTTGCTATC	0.433													25	61					0	0	0.003954	0	0
TTN	7273	broad.mit.edu	37	2	179425679	179425679	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:179425679C>T	uc010zfg.1	-	275	77700	c.77476G>A	c.(77476-77478)GAT>AAT	p.D25826N	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.D19521N|TTN_uc010zfi.1_Missense_Mutation_p.D19454N|TTN_uc010zfj.1_Missense_Mutation_p.D19329N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	26753							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCTATACCATCCTTGGCCCAG	0.418													24	63					0	0	0.002780	0	0
TTN	7273	broad.mit.edu	37	2	179426223	179426223	+	Silent	SNP	A	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:179426223A>G	uc010zfg.1	-	275	77156	c.76932T>C	c.(76930-76932)ACT>ACC	p.T25644T	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.T19339T|TTN_uc010zfi.1_Silent_p.T19272T|TTN_uc010zfj.1_Silent_p.T19147T	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	26571							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTTTCATTTGAGTATCAGCAA	0.363													14	50					0	0	0.001855	0	0
TTN	7273	broad.mit.edu	37	2	179428325	179428325	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:179428325C>T	uc010zfg.1	-	275	75054	c.74830G>A	c.(74830-74832)GAA>AAA	p.E24944K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E18639K|TTN_uc010zfi.1_Missense_Mutation_p.E18572K|TTN_uc010zfj.1_Missense_Mutation_p.E18447K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	25871							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTAACGCCTTCCTTATCTCGT	0.468													37	80					0	0	0.003755	0	0
TTN	7273	broad.mit.edu	37	2	179429354	179429354	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:179429354C>T	uc010zfg.1	-	275	74025	c.73801G>A	c.(73801-73803)GAT>AAT	p.D24601N	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.D18296N|TTN_uc010zfi.1_Missense_Mutation_p.D18229N|TTN_uc010zfj.1_Missense_Mutation_p.D18104N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	25528							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCACATGGATCACGAGCAACA	0.443													17	22					0	0	0.012319	0	0
TTN	7273	broad.mit.edu	37	2	179438107	179438107	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:179438107C>T	uc010zfg.1	-	275	65272	c.65048G>A	c.(65047-65049)GGA>GAA	p.G21683E	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.G15378E|TTN_uc010zfi.1_Missense_Mutation_p.G15311E|TTN_uc010zfj.1_Missense_Mutation_p.G15186E	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	22610							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GATTTCACTTCCACCATCAGA	0.408													7	47					0	0	0.004482	0	0
TTN	7273	broad.mit.edu	37	2	179439256	179439256	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:179439256C>T	uc010zfg.1	-	275	64123	c.63899G>A	c.(63898-63900)CGA>CAA	p.R21300Q	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.R14995Q|TTN_uc010zfi.1_Missense_Mutation_p.R14928Q|TTN_uc010zfj.1_Missense_Mutation_p.R14803Q	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	22227							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AATACCATTTCGTTCTTTTCT	0.418													36	111					0	0	0.003755	0	0
TTN	7273	broad.mit.edu	37	2	179439647	179439647	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:179439647C>T	uc010zfg.1	-	275	63732	c.63508G>A	c.(63508-63510)GAA>AAA	p.E21170K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E14865K|TTN_uc010zfi.1_Missense_Mutation_p.E14798K|TTN_uc010zfj.1_Missense_Mutation_p.E14673K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	22097							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GATGAAACTTCATCAAATTTG	0.448													8	15					0	0	0.004482	0	0
TTN	7273	broad.mit.edu	37	2	179456835	179456835	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:179456835C>T	uc010zfg.1	-	251	52316	c.52092G>A	c.(52090-52092)AAG>AAA	p.K17364K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.K11059K|TTN_uc010zfi.1_Silent_p.K10992K|TTN_uc010zfj.1_Silent_p.K10867K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	18291							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GACTCTTTTTCTTTGATGTAG	0.473													5	24					0	0	0.001168	0	0
TTN	7273	broad.mit.edu	37	2	179464302	179464302	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:179464302C>T	uc010zfg.1	-	238	48846	c.48622G>A	c.(48622-48624)GAG>AAG	p.E16208K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E9903K|TTN_uc010zfi.1_Missense_Mutation_p.E9836K|TTN_uc010zfj.1_Missense_Mutation_p.E9711K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	17135							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGTCTCATCTCCTTTGATGCT	0.383													57	182					0	0	0.014410	0	0
TTN	7273	broad.mit.edu	37	2	179464311	179464311	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:179464311C>T	uc010zfg.1	-	238	48837	c.48613G>A	c.(48613-48615)GCA>ACA	p.A16205T	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.A9900T|TTN_uc010zfi.1_Missense_Mutation_p.A9833T|TTN_uc010zfj.1_Missense_Mutation_p.A9708T	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	17132							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCCTTTGATGCTGTTCCCAGA	0.383													78	154					0	0	0.014410	0	0
TTN	7273	broad.mit.edu	37	2	179465822	179465822	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:179465822C>T	uc010zfg.1	-	237	48329	c.48105G>A	c.(48103-48105)CCG>CCA	p.P16035P	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.P9730P|TTN_uc010zfi.1_Silent_p.P9663P|TTN_uc010zfj.1_Silent_p.P9538P	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	16962							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CATCATTCTTCGGGGGTTTCC	0.458													18	51					0	0	0.004990	0	0
TTN	7273	broad.mit.edu	37	2	179466861	179466861	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:179466861G>A	uc010zfg.1	-	233	47657	c.47433C>T	c.(47431-47433)TTC>TTT	p.F15811F	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.F9506F|TTN_uc010zfi.1_Silent_p.F9439F|TTN_uc010zfj.1_Silent_p.F9314F	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	16738							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CAATGTCAATGAAAACTTCTG	0.378													16	50					0	0	0.004007	0	0
TTN	7273	broad.mit.edu	37	2	179477637	179477637	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:179477637C>T	uc010zfg.1	-	214	42331	c.42107G>A	c.(42106-42108)GGG>GAG	p.G14036E	uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.G7731E|TTN_uc010zfi.1_Missense_Mutation_p.G7664E|TTN_uc010zfj.1_Missense_Mutation_p.G7539E	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	14963							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GGTGGGAACCCCTTCCGCCAC	0.488													15	25					0	0	0.002450	0	0
TTN	7273	broad.mit.edu	37	2	179477893	179477893	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:179477893G>A	uc010zfg.1	-	213	42163	c.41939C>T	c.(41938-41940)CCC>CTC	p.P13980L	uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.P7675L|TTN_uc010zfi.1_Missense_Mutation_p.P7608L|TTN_uc010zfj.1_Missense_Mutation_p.P7483L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	14907							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AATACCTATGGGATCCTTTAT	0.343													5	21					0	0	0.000602	0	0
TTN	7273	broad.mit.edu	37	2	179478868	179478868	+	Missense_Mutation	SNP	T	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:179478868T>A	uc010zfg.1	-	211	41776	c.41552A>T	c.(41551-41553)AAA>ATA	p.K13851I	uc002ump.1_RNA|TTN_uc010zfh.1_Missense_Mutation_p.K7546I|TTN_uc010zfi.1_Missense_Mutation_p.K7479I|TTN_uc010zfj.1_Missense_Mutation_p.K7354I	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	14778							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GATGTACTCTTTATTGGGGAT	0.433													4	17					0	0	0.000602	0	0
TTN	7273	broad.mit.edu	37	2	179497392	179497392	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:179497392G>A	uc010zfg.1	-	184	35861	c.35637C>T	c.(35635-35637)ATC>ATT	p.I11879I	TTN_uc010zfh.1_Silent_p.I5574I|TTN_uc010zfi.1_Silent_p.I5507I|TTN_uc010zfj.1_Silent_p.I5382I	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	12806							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CATCACCTGTGATTTCCTGGG	0.408													74	109					0	0	0.014410	0	0
TTN	7273	broad.mit.edu	37	2	179497712	179497712	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:179497712C>T	uc010zfg.1	-	183	35666	c.35442G>A	c.(35440-35442)CTG>CTA	p.L11814L	TTN_uc010zfh.1_Silent_p.L5509L|TTN_uc010zfi.1_Silent_p.L5442L|TTN_uc010zfj.1_Silent_p.L5317L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	12741							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTGTCATACCCAGCTGACAGT	0.423													39	55					0	0	0.004878	0	0
TTN	7273	broad.mit.edu	37	2	179497750	179497750	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:179497750C>T	uc010zfg.1	-	183	35628	c.35404G>A	c.(35404-35406)GGA>AGA	p.G11802R	TTN_uc010zfh.1_Missense_Mutation_p.G5497R|TTN_uc010zfi.1_Missense_Mutation_p.G5430R|TTN_uc010zfj.1_Missense_Mutation_p.G5305R	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	12729							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGCTTCTTTCCATCCTCAATG	0.388													12	30					0	0	0.013537	0	0
TTN	7273	broad.mit.edu	37	2	179542471	179542471	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:179542471C>T	uc010zfg.1	-	143	30660	c.30436G>A	c.(30436-30438)GAA>AAA	p.E10146K	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.E6807K|TTN_uc010fre.1_Intron|TTN_uc002una.1_RNA|TTN_uc010frf.1_RNA	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	11073							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GGTGGAATTTCCTCTTCTTCA	0.433													21	105					0	0	0.004656	0	0
TTN	7273	broad.mit.edu	37	2	179556794	179556794	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:179556794C>T	uc010zfg.1	-	118	28203	c.27979G>A	c.(27979-27981)GAG>AAG	p.E9327K	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.E5988K|TTN_uc010fre.1_Missense_Mutation_p.E438K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	10254							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GGCTTTTTCTCCTCTGGCACG	0.463													9	49					0	0	0.006214	0	0
TTN	7273	broad.mit.edu	37	2	179569031	179569031	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:179569031G>A	uc010zfg.1	-	103	26558	c.26334C>T	c.(26332-26334)TTC>TTT	p.F8778F	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.F5439F	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	9705							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGCCATTTCTGAACCATTCAG	0.433													24	53					0	0	0.002780	0	0
TTN	7273	broad.mit.edu	37	2	179579181	179579181	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:179579181C>T	uc010zfg.1	-	88	22812	c.22588G>A	c.(22588-22590)GGA>AGA	p.G7530R	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.G4191R	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	8457							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ACGATTTCTCCCTTATCTTTG	0.408													4	23					0	0	0.009096	0	0
TTN	7273	broad.mit.edu	37	2	179583544	179583544	+	Missense_Mutation	SNP	A	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:179583544A>T	uc010zfg.1	-	81	20875	c.20651T>A	c.(20650-20652)CTG>CAG	p.L6884Q	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.L3545Q	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	7811							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AAAATCTTCCAGAGAGATGTT	0.488													13	24					0	0	0.004007	0	0
TTN	7273	broad.mit.edu	37	2	179584851	179584851	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:179584851C>T	uc010zfg.1	-	78	20010	c.19786G>A	c.(19786-19788)GAA>AAA	p.E6596K	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.E3257K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	7523							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTGGTATTTTCACTCTCTCTG	0.433													27	39					0	0	0.009535	0	0
TTN	7273	broad.mit.edu	37	2	179587620	179587620	+	Missense_Mutation	SNP	C	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:179587620C>G	uc010zfg.1	-	73	18498	c.18274G>C	c.(18274-18276)GTT>CTT	p.V6092L	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.V2753L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	7019							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GAATCTCCAACTGCTGCCTCC	0.418													8	11					0	0	0.003080	0	0
TTN	7273	broad.mit.edu	37	2	179590212	179590212	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:179590212C>T	uc010zfg.1	-	68	17211	c.16987G>A	c.(16987-16989)GAA>AAA	p.E5663K	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.E2324K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	6590							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GCAACATTTTCCACAAATGTA	0.418													9	35					0	0	0.006214	0	0
TTN	7273	broad.mit.edu	37	2	179590236	179590236	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:179590236C>T	uc010zfg.1	-	68	17187	c.16963G>A	c.(16963-16965)GAA>AAA	p.E5655K	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.E2316K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	6582							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTGATGTTTTCACTTTCTCTA	0.418													9	43					0	0	0.006214	0	0
TTN	7273	broad.mit.edu	37	2	179590607	179590608	+	Missense_Mutation	DNP	GA	AT	AT			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:179590607_179590608GA>AT	uc010zfg.1	-	67	16933_16934	c.16709_16710TC>AT	c.(16708-16710)TTC>TAT	p.F5570Y	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.F2231Y	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	6497							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TACTTGTGTGGAAGTTTTTGGA	0.431													11	23					0	0	0.004672	0	0
TTN	7273	broad.mit.edu	37	2	179592867	179592867	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:179592867C>T	uc010zfg.1	-	64	16176	c.15952G>A	c.(15952-15954)GAT>AAT	p.D5318N	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.D1979N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	6245							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTGCATGCATCATCTCCTGCT	0.383													6	17					0	0	0.001984	0	0
TTN	7273	broad.mit.edu	37	2	179595338	179595338	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:179595338G>A	uc010zfg.1	-	58	14414	c.14190C>T	c.(14188-14190)GCC>GCT	p.A4730A	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.A1391A	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	5657							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTTCCAAGAAGGCAGTATTGT	0.453													32	51					0	0	0.009535	0	0
TTN	7273	broad.mit.edu	37	2	179595718	179595718	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:179595718C>T	uc010zfg.1	-	57	14166	c.13942G>A	c.(13942-13944)GAA>AAA	p.E4648K	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.E1309K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	5575							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AAAGTATATTCTCCACTATCT	0.393													68	106					0	0	0.014410	0	0
TTN	7273	broad.mit.edu	37	2	179603894	179603894	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:179603894G>A	uc010zfh.1	-	46	13777	c.13553C>T	c.(13552-13554)TCA>TTA	p.S4518L	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Missense_Mutation_p.S4451L|TTN_uc010zfj.1_Missense_Mutation_p.S4326L|TTN_uc002umz.1_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GAGTTTGGCTGAAGTTGCTGT	0.368													4	15					0	0	0.000602	0	0
TTN	7273	broad.mit.edu	37	2	179604785	179604785	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:179604785C>T	uc010zfh.1	-	46	12886	c.12662G>A	c.(12661-12663)AGA>AAA	p.R4221K	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Missense_Mutation_p.R4154K|TTN_uc010zfj.1_Missense_Mutation_p.R4029K|TTN_uc002umz.1_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CAGGTTTAATCTCTGCTCTTC	0.468													10	35					0	0	0.006214	0	0
TTN	7273	broad.mit.edu	37	2	179612236	179612236	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:179612236G>A	uc002unb.2	-	46	15115	c.14891C>T	c.(14890-14892)TCT>TTT	p.S4964F	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGACTCAGGAGAAAGTGGACG	0.393													23	49					0	0	0.014323	0	0
TTN	7273	broad.mit.edu	37	2	179612279	179612279	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:179612279C>T	uc002unb.2	-	46	15072	c.14848G>A	c.(14848-14850)GAA>AAA	p.E4950K	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTGTAGTATTCATACACAGTG	0.428													21	44					0	0	0.002780	0	0
TTN	7273	broad.mit.edu	37	2	179612525	179612525	+	Nonsense_Mutation	SNP	C	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:179612525C>A	uc002unb.2	-	46	14826	c.14602G>T	c.(14602-14604)GAA>TAA	p.E4868*	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AAAGAAGCTTCATTCTGAACT	0.358													14	40					3.27435e-08	3.51808e-08	0.002450	1	0
TTN	7273	broad.mit.edu	37	2	179612720	179612720	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:179612720C>T	uc002unb.2	-	46	14631	c.14407G>A	c.(14407-14409)GAA>AAA	p.E4803K	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	913							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCTGTATATTCCTGTGTCCCA	0.483													14	21					0	0	0.002450	0	0
TTN	7273	broad.mit.edu	37	2	179614065	179614065	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:179614065G>A	uc002unb.2	-	46	13286	c.13062C>T	c.(13060-13062)TTC>TTT	p.F4354F	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GACATTGTATGAATTCAGCCC	0.418													29	45					0	0	0.003271	0	0
TTN	7273	broad.mit.edu	37	2	179614846	179614846	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:179614846C>T	uc002unb.2	-	46	12505	c.12281G>A	c.(12280-12282)GGA>GAA	p.G4094E	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTCTGTGTCTCCAGAGGGAGG	0.428													16	32					0	0	0.004007	0	0
TTN	7273	broad.mit.edu	37	2	179633554	179633554	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:179633554C>T	uc010zfg.1	-	38	9233	c.9009G>A	c.(9007-9009)AAG>AAA	p.K3003K	TTN_uc010zfh.1_Silent_p.K2957K|TTN_uc010zfi.1_Silent_p.K2957K|TTN_uc010zfj.1_Silent_p.K2957K|TTN_uc002unb.2_Silent_p.K3003K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	3003							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CCACACCATTCTTTAACCATT	0.403													12	42					0	0	0.010729	0	0
TTN	7273	broad.mit.edu	37	2	179637975	179637975	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:179637975G>A	uc010zfg.1	-	33	7940	c.7716C>T	c.(7714-7716)ATC>ATT	p.I2572I	TTN_uc010zfh.1_Silent_p.I2526I|TTN_uc010zfi.1_Silent_p.I2526I|TTN_uc010zfj.1_Silent_p.I2526I|TTN_uc002unb.2_Silent_p.I2572I	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	2572							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AACTGGGCTTGATTTCCTTGT	0.348													18	13					0	0	0.006122	0	0
TTN	7273	broad.mit.edu	37	2	179638298	179638298	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:179638298C>T	uc010zfg.1	-	32	7709	c.7485G>A	c.(7483-7485)GTG>GTA	p.V2495V	TTN_uc010zfh.1_Silent_p.V2449V|TTN_uc010zfi.1_Silent_p.V2449V|TTN_uc010zfj.1_Silent_p.V2449V|TTN_uc002unb.2_Silent_p.V2495V	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	2495							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TAGTACCTTTCACAATGGCCT	0.428													20	35					0	0	0.012319	0	0
TTN	7273	broad.mit.edu	37	2	179638756	179638756	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:179638756G>A	uc010zfg.1	-	31	7363	c.7139C>T	c.(7138-7140)TCC>TTC	p.S2380F	TTN_uc010zfh.1_Missense_Mutation_p.S2334F|TTN_uc010zfi.1_Missense_Mutation_p.S2334F|TTN_uc010zfj.1_Missense_Mutation_p.S2334F|TTN_uc002unb.2_Missense_Mutation_p.S2380F|uc002unc.1_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	2380							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ACTTTCCAAGGAGACTTTAAC	0.473													45	62					0	0	0.010771	0	0
TTN	7273	broad.mit.edu	37	2	179639836	179639836	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:179639836G>A	uc010zfg.1	-	29	6826	c.6602C>T	c.(6601-6603)CCA>CTA	p.P2201L	TTN_uc010zfh.1_Missense_Mutation_p.P2155L|TTN_uc010zfi.1_Missense_Mutation_p.P2155L|TTN_uc010zfj.1_Missense_Mutation_p.P2155L|TTN_uc002unb.2_Missense_Mutation_p.P2201L|uc002unc.1_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	2201							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTTGACAAATGGTTCTGAAGT	0.393													12	31					0	0	0.010729	0	0
TTN	7273	broad.mit.edu	37	2	179640842	179640842	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:179640842G>A	uc010zfg.1	-	28	5973	c.5749C>T	c.(5749-5751)CCT>TCT	p.P1917S	TTN_uc010zfh.1_Missense_Mutation_p.P1871S|TTN_uc010zfi.1_Missense_Mutation_p.P1871S|TTN_uc010zfj.1_Missense_Mutation_p.P1871S|TTN_uc002unb.2_Missense_Mutation_p.P1917S|uc002unc.1_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	1917							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ACACCTTCAGGATTTTCCGCG	0.453													28	136					0	0	0.008361	0	0
TTN	7273	broad.mit.edu	37	2	179642434	179642434	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:179642434C>T	uc010zfg.1	-	25	4701	c.4477G>A	c.(4477-4479)GAT>AAT	p.D1493N	TTN_uc010zfh.1_Missense_Mutation_p.D1447N|TTN_uc010zfi.1_Missense_Mutation_p.D1447N|TTN_uc010zfj.1_Missense_Mutation_p.D1447N|TTN_uc002unb.2_Missense_Mutation_p.D1493N|uc002unc.1_RNA	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	1493							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CGCTTACCATCATGAAACCAG	0.323													17	54					0	0	0.006122	0	0
TTN	7273	broad.mit.edu	37	2	179647575	179647575	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:179647575C>T	uc010zfg.1	-	18	3282	c.3058G>A	c.(3058-3060)GAG>AAG	p.E1020K	TTN_uc010zfh.1_Missense_Mutation_p.E974K|TTN_uc010zfi.1_Missense_Mutation_p.E974K|TTN_uc010zfj.1_Missense_Mutation_p.E974K|TTN_uc002unb.2_Missense_Mutation_p.E1020K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	1020							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTTCCAGCCTCATTTACAGCA	0.507													10	22					0	0	0.010729	0	0
CCDC141	285025	broad.mit.edu	37	2	179701784	179701784	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:179701784G>A	uc002unf.1	-	13	2494	c.2437C>T	c.(2437-2439)CCT>TCT	p.P813S	CCDC141_uc002une.1_Missense_Mutation_p.P263S	NM_173648	NP_775919	Q6ZP82	CC141_HUMAN	coiled-coil domain containing 141	813							protein binding			ovary(7)|pancreas(2)|skin(1)	10			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.0531)|all cancers(119;0.147)			TCTTCTCGAGGAACCATTTGC	0.498													14	31					0	0	0.002450	0	0
CCDC141	285025	broad.mit.edu	37	2	179702064	179702064	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:179702064G>A	uc002unf.1	-	13	2214	c.2157C>T	c.(2155-2157)TTC>TTT	p.F719F	CCDC141_uc002une.1_Silent_p.F169F	NM_173648	NP_775919	Q6ZP82	CC141_HUMAN	coiled-coil domain containing 141	719							protein binding			ovary(7)|pancreas(2)|skin(1)	10			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.0531)|all cancers(119;0.147)			GCTCAGCTTTGAACTGGAGGT	0.473													17	56					0	0	0.004990	0	0
CCDC141	285025	broad.mit.edu	37	2	179702380	179702380	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:179702380C>T	uc002unf.1	-	13	1898	c.1841G>A	c.(1840-1842)GGT>GAT	p.G614D	CCDC141_uc002une.1_Missense_Mutation_p.G64D	NM_173648	NP_775919	Q6ZP82	CC141_HUMAN	coiled-coil domain containing 141	614							protein binding			ovary(7)|pancreas(2)|skin(1)	10			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.0531)|all cancers(119;0.147)			CTGGACGCCACCCTCCTTGTC	0.547													22	51					0	0	0.014323	0	0
ITGA4	3676	broad.mit.edu	37	2	182350645	182350645	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:182350645G>A	uc002unu.2	+	10	1842	c.1079G>A	c.(1078-1080)GGA>GAA	p.G360E	ITGA4_uc010zfl.1_Missense_Mutation_p.G360E	NM_000885	NP_000876	P13612	ITA4_HUMAN	integrin alpha 4 precursor	360	FG-GAP 6.|Extracellular (Potential).				blood coagulation|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response	integrin complex	identical protein binding|receptor activity			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.0593)		Natalizumab(DB00108)	AACCTCGTTGGAAGTGACAAA	0.368													18	25					0	0	0.014323	0	0
ITGA4	3676	broad.mit.edu	37	2	182390014	182390014	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:182390014C>T	uc002unu.2	+	21	3098	c.2335C>T	c.(2335-2337)CAT>TAT	p.H779Y	ITGA4_uc010frj.1_Missense_Mutation_p.H261Y|ITGA4_uc002unv.2_Missense_Mutation_p.H24Y	NM_000885	NP_000876	P13612	ITA4_HUMAN	integrin alpha 4 precursor	779	Extracellular (Potential).				blood coagulation|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response	integrin complex	identical protein binding|receptor activity			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.0593)		Natalizumab(DB00108)	GCTGACTGTTCATGGGTAAGT	0.323													5	16					0	0	0.000602	0	0
ITGA4	3676	broad.mit.edu	37	2	182399556	182399556	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:182399556G>A	uc002unu.2	+	27	3660	c.2897G>A	c.(2896-2898)GGA>GAA	p.G966E	ITGA4_uc002unv.2_Missense_Mutation_p.G211E	NM_000885	NP_000876	P13612	ITA4_HUMAN	integrin alpha 4 precursor	966	Extracellular (Potential).				blood coagulation|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response	integrin complex	identical protein binding|receptor activity			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.0593)		Natalizumab(DB00108)	CTACTGGAAGGACTACATCAT	0.323													13	40					0	0	0.004007	0	0
CERKL	375298	broad.mit.edu	37	2	182412563	182412563	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:182412563C>T	uc002unx.2	-	10	1324	c.1223G>A	c.(1222-1224)GGA>GAA	p.G408E	CERKL_uc002uny.2_Missense_Mutation_p.G382E|CERKL_uc010zfm.1_Missense_Mutation_p.G364E|CERKL_uc002unz.2_Missense_Mutation_p.G130E|CERKL_uc002uoa.2_Missense_Mutation_p.G313E|CERKL_uc002uob.2_Missense_Mutation_p.G130E|CERKL_uc002uoc.2_Missense_Mutation_p.G269E|CERKL_uc010frk.2_Intron|CERKL_uc002uod.1_Missense_Mutation_p.G177E|CERKL_uc002unw.2_5'UTR	NM_001030311	NP_001025482	Q49MI3	CERKL_HUMAN	ceramide kinase-like isoform b	408					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|anti-apoptosis	endoplasmic reticulum|endoplasmic reticulum|Golgi apparatus|Golgi apparatus|nucleolus|nucleolus	diacylglycerol kinase activity			ovary(2)|kidney(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.088)			TTTGGGAGATCCCTGTGCCCT	0.393													33	99					0	0	0.004878	0	0
NUP35	129401	broad.mit.edu	37	2	184016308	184016308	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:184016308C>T	uc002upf.2	+	5	573	c.470C>T	c.(469-471)CCT>CTT	p.P157L	NUP35_uc010zfs.1_Missense_Mutation_p.P139L|NUP35_uc010zft.1_Missense_Mutation_p.P39L|NUP35_uc002upg.2_Intron	NM_138285	NP_612142	Q8NFH5	NUP53_HUMAN	nucleoporin 35kDa	157					carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	intermediate filament cytoskeleton|nuclear membrane|nuclear pore|plasma membrane					0						CAGTTGGATCCTTTTTATACT	0.398													11	38					0	0	0.013537	0	0
ZNF804A	91752	broad.mit.edu	37	2	185798363	185798363	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:185798363C>T	uc002uph.2	+	3	883	c.289C>T	c.(289-291)CGA>TGA	p.R97*		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	97						intracellular	zinc ion binding	p.R97Q(1)		ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						GGAATTTGCTCGAAATGTAGC	0.368													5	16					0	0	0.000602	0	0
ZNF804A	91752	broad.mit.edu	37	2	185803517	185803517	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:185803517C>T	uc002uph.2	+	4	3988	c.3394C>T	c.(3394-3396)CTT>TTT	p.L1132F		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	1132						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						CCAACAGTTTCTTTCCCAAAT	0.368													10	49					0	0	0.010729	0	0
FAM171B	165215	broad.mit.edu	37	2	187626444	187626444	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:187626444G>A	uc002ups.2	+	8	1487	c.1375G>A	c.(1375-1377)GAT>AAT	p.D459N	FAM171B_uc002upr.1_Missense_Mutation_p.D426N|FAM171B_uc002upt.2_5'Flank	NM_177454	NP_803237	Q6P995	F171B_HUMAN	KIAA1946	459	Cytoplasmic (Potential).					integral to membrane	DNA binding			ovary(6)|breast(3)|central_nervous_system(1)	10						AACTCGGGACGATTTTAAAAT	0.368													17	29					0	0	0.006122	0	0
FAM171B	165215	broad.mit.edu	37	2	187626958	187626958	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:187626958C>T	uc002ups.2	+	8	2001	c.1889C>T	c.(1888-1890)TCC>TTC	p.S630F	FAM171B_uc002upr.1_Missense_Mutation_p.S597F|FAM171B_uc002upt.2_Missense_Mutation_p.S99F	NM_177454	NP_803237	Q6P995	F171B_HUMAN	KIAA1946	630	Cytoplasmic (Potential).					integral to membrane	DNA binding			ovary(6)|breast(3)|central_nervous_system(1)	10						TTACTGGAATCCGTCTCTGTT	0.488													18	62					0	0	0.008871	0	0
FAM171B	165215	broad.mit.edu	37	2	187627133	187627133	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:187627133C>T	uc002ups.2	+	8	2176	c.2064C>T	c.(2062-2064)TCC>TCT	p.S688S	FAM171B_uc002upr.1_Silent_p.S655S|FAM171B_uc002upt.2_Silent_p.S157S	NM_177454	NP_803237	Q6P995	F171B_HUMAN	KIAA1946	688	Cytoplasmic (Potential).					integral to membrane	DNA binding			ovary(6)|breast(3)|central_nervous_system(1)	10						TGAGGCACTCCTTTATAGACC	0.517													10	46					0	0	0.006214	0	0
ZSWIM2	151112	broad.mit.edu	37	2	187693180	187693180	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:187693180G>A	uc002upu.1	-	9	1473	c.1433C>T	c.(1432-1434)TCA>TTA	p.S478L		NM_182521	NP_872327	Q8NEG5	ZSWM2_HUMAN	zinc finger, SWIM domain containing 2	478					apoptosis		zinc ion binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.164)			TTTTGAATTTGAATTATCTAA	0.303													11	27					0	0	0.010729	0	0
COL3A1	1281	broad.mit.edu	37	2	189863020	189863020	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:189863020G>A	uc002uqj.1	+	28	2069	c.1952G>A	c.(1951-1953)GGA>GAA	p.G651E		NM_000090	NP_000081	P02461	CO3A1_HUMAN	collagen type III alpha 1 preproprotein	651	Triple-helical region.				axon guidance|cell-matrix adhesion|collagen biosynthetic process|collagen fibril organization|fibril organization|heart development|integrin-mediated signaling pathway|negative regulation of immune response|peptide cross-linking|platelet activation|response to cytokine stimulus|response to radiation|skin development|transforming growth factor beta receptor signaling pathway	collagen type III|extracellular space	extracellular matrix structural constituent|integrin binding|platelet-derived growth factor binding			central_nervous_system(7)|ovary(4)|large_intestine(2)	13			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.141)		Collagenase(DB00048)|Palifermin(DB00039)	GGTCCTCCAGGAGAAAATGGA	0.363													12	27					0	0	0.013537	0	0
COL5A2	1290	broad.mit.edu	37	2	189904202	189904202	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:189904202C>T	uc002uqk.2	-	51	3996	c.3721G>A	c.(3721-3723)GAT>AAT	p.D1241N	COL5A2_uc010frx.2_Missense_Mutation_p.D817N	NM_000393	NP_000384	P05997	CO5A2_HUMAN	alpha 2 type V collagen preproprotein	1241					axon guidance|collagen fibril organization|eye morphogenesis|skin development	collagen type V	extracellular matrix structural constituent			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.127)			ATGCTTTCATCATAGTGCCCC	0.547													7	24					0	0	0.001984	0	0
COL5A2	1290	broad.mit.edu	37	2	189936776	189936776	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:189936776G>A	uc002uqk.2	-	18	1423	c.1148C>T	c.(1147-1149)CCT>CTT	p.P383L	COL5A2_uc010frx.2_Intron	NM_000393	NP_000384	P05997	CO5A2_HUMAN	alpha 2 type V collagen preproprotein	383					axon guidance|collagen fibril organization|eye morphogenesis|skin development	collagen type V	extracellular matrix structural constituent			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.127)			CTTCATTCCAGGATTTCCTGG	0.333													10	12					0	0	0.013537	0	0
Unknown	0	broad.mit.edu	37	2	190788867	190788867	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:190788867G>A	uc002uro.2	+	1	949	c.806G>A	c.(805-807)TGA>TAA	p.*269*						SubName: Full=cDNA FLJ54127, highly similar to Heterogeneous nuclear ribonucleoproteins C;																		AGCTGGAGTTGATCAAGGATG	0.502													13	44					0	0	0.014323	0	0
SDPR	8436	broad.mit.edu	37	2	192700913	192700913	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:192700913G>A	uc002utb.2	-	2	1344	c.1014C>T	c.(1012-1014)TCC>TCT	p.S338S		NM_004657	NP_004648	O95810	SDPR_HUMAN	serum deprivation response protein	338						caveola|cytosol	phosphatidylserine binding|protein binding			ovary(1)|pancreas(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0647)		Phosphatidylserine(DB00144)	GGGACGCTTCGGAATGACCCT	0.562													32	62					0	0	0.013726	0	0
SDPR	8436	broad.mit.edu	37	2	192701319	192701319	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:192701319G>A	uc002utb.2	-	2	938	c.608C>T	c.(607-609)TCC>TTC	p.S203F		NM_004657	NP_004648	O95810	SDPR_HUMAN	serum deprivation response protein	203						caveola|cytosol	phosphatidylserine binding|protein binding			ovary(1)|pancreas(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0647)		Phosphatidylserine(DB00144)	ATCATCTGAGGAGAGGTCCAC	0.532													15	46					0	0	0.003163	0	0
SLC39A10	57181	broad.mit.edu	37	2	196581636	196581636	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:196581636G>A	uc002utg.3	+	7	2186	c.1972G>A	c.(1972-1974)GGA>AGA	p.G658R	SLC39A10_uc002uth.3_Missense_Mutation_p.G658R|SLC39A10_uc010zgp.1_Missense_Mutation_p.G208R	NM_001127257	NP_001120729	Q9ULF5	S39AA_HUMAN	solute carrier family 39 (zinc transporter),	658					zinc ion transport	integral to membrane	metal ion transmembrane transporter activity			pancreas(1)|skin(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.221)			CTGTCATTCTGGATCCGATCT	0.488													26	31					0	0	0.006320	0	0
DNAH7	56171	broad.mit.edu	37	2	196651834	196651834	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:196651834C>T	uc002utj.3	-	58	10879	c.10778G>A	c.(10777-10779)CGG>CAG	p.R3593Q	DNAH7_uc002uti.3_Missense_Mutation_p.R76Q	NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	3593	AAA 6 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						TCCAAATTTCCGTCTTTCTTG	0.413													22	37					0	0	0.012319	0	0
DNAH7	56171	broad.mit.edu	37	2	196659083	196659083	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:196659083G>A	uc002utj.3	-	57	10796	c.10695C>T	c.(10693-10695)TTC>TTT	p.F3565F	DNAH7_uc002uti.3_Silent_p.F48F	NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	3565	AAA 6 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						AGCTGCCAAAGAACTCCGGAT	0.463													40	46					0	0	0.014410	0	0
DNAH7	56171	broad.mit.edu	37	2	196681402	196681402	+	Silent	SNP	A	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:196681402A>G	uc002utj.3	-	51	9812	c.9711T>C	c.(9709-9711)CTT>CTC	p.L3237L		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	3237					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						ACAGGATGAAAAGGTTAATAA	0.328													4	30					0	0	0.000602	0	0
DNAH7	56171	broad.mit.edu	37	2	196749415	196749415	+	Missense_Mutation	SNP	C	T	T	rs13034775		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:196749415C>T	uc002utj.3	-	35	5758	c.5657G>A	c.(5656-5658)CGA>CAA	p.R1886Q		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	1886					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						AAACGTATTTCGAGTTCGATC	0.358													11	41					0	0	0.002450	0	0
DNAH7	56171	broad.mit.edu	37	2	196851790	196851790	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:196851790C>T	uc002utj.3	-	14	1855	c.1754G>A	c.(1753-1755)AGA>AAA	p.R585K		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	585	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						ACATAAATACCTTGTATTTAC	0.343													24	45					0	0	0.006320	0	0
HECW2	57520	broad.mit.edu	37	2	197122610	197122610	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:197122610C>T	uc002utm.1	-	18	3539	c.3356G>A	c.(3355-3357)CGA>CAA	p.R1119Q	HECW2_uc002utl.1_Missense_Mutation_p.R763Q|uc002utn.1_5'Flank	NM_020760	NP_065811	Q9P2P5	HECW2_HUMAN	HECT, C2 and WW domain containing E3 ubiquitin	1119					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm	ubiquitin-protein ligase activity			skin(5)|ovary(5)|lung(4)|pancreas(2)|central_nervous_system(1)|kidney(1)	18						CCCTTCAGTTCGGATAAATTG	0.403													19	63					0	0	0.010504	0	0
HECW2	57520	broad.mit.edu	37	2	197182016	197182016	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:197182016C>T	uc002utm.1	-	10	2599	c.2416G>A	c.(2416-2418)GAC>AAC	p.D806N	HECW2_uc002utl.1_Missense_Mutation_p.D450N	NM_020760	NP_065811	Q9P2P5	HECW2_HUMAN	HECT, C2 and WW domain containing E3 ubiquitin	806	Interaction with TP73.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm	ubiquitin-protein ligase activity			skin(5)|ovary(5)|lung(4)|pancreas(2)|central_nervous_system(1)|kidney(1)	18						AGAGCCTCGTCCACCCTCTGG	0.517													5	16					0	0	0.000602	0	0
HECW2	57520	broad.mit.edu	37	2	197182092	197182092	+	Silent	SNP	A	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:197182092A>G	uc002utm.1	-	10	2523	c.2340T>C	c.(2338-2340)GGT>GGC	p.G780G	HECW2_uc002utl.1_Silent_p.G424G	NM_020760	NP_065811	Q9P2P5	HECW2_HUMAN	HECT, C2 and WW domain containing E3 ubiquitin	780	Interaction with TP73.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm	ubiquitin-protein ligase activity			skin(5)|ovary(5)|lung(4)|pancreas(2)|central_nervous_system(1)|kidney(1)	18						TGGCTTGAGAACCTAGGATTA	0.473													4	7					0	0	0.009096	0	0
HECW2	57520	broad.mit.edu	37	2	197184551	197184551	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:197184551C>T	uc002utm.1	-	9	1246	c.1063G>A	c.(1063-1065)GAG>AAG	p.E355K	HECW2_uc002utl.1_5'UTR	NM_020760	NP_065811	Q9P2P5	HECW2_HUMAN	HECT, C2 and WW domain containing E3 ubiquitin	355					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm	ubiquitin-protein ligase activity			skin(5)|ovary(5)|lung(4)|pancreas(2)|central_nervous_system(1)|kidney(1)	18						GGCATGTCCTCGTCATCGGAA	0.512													12	37					0	0	0.013537	0	0
CCDC150	284992	broad.mit.edu	37	2	197540974	197540974	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:197540974C>T	uc002utp.1	+	11	1380	c.1245C>T	c.(1243-1245)ACC>ACT	p.T415T	CCDC150_uc010zgq.1_RNA|CCDC150_uc010zgr.1_RNA|CCDC150_uc010zgs.1_Silent_p.T83T	NM_001080539	NP_001074008	Q8NCX0	CC150_HUMAN	coiled-coil domain containing 150	415	Potential.										0						ATGAGAAAACCCAACTCCAGG	0.393													39	114					0	0	0.010771	0	0
SPATS2L	26010	broad.mit.edu	37	2	201284121	201284121	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:201284121C>T	uc002uvn.3	+	6	699	c.347C>T	c.(346-348)TCG>TTG	p.S116L	SPATS2L_uc010fst.2_Missense_Mutation_p.S116L|SPATS2L_uc002uvo.3_Missense_Mutation_p.S56L|SPATS2L_uc002uvp.3_Missense_Mutation_p.S116L|SPATS2L_uc002uvq.3_Missense_Mutation_p.S116L|SPATS2L_uc002uvr.3_Missense_Mutation_p.S116L|SPATS2L_uc010zhc.1_Missense_Mutation_p.S146L	NM_015535	NP_056350	Q9NUQ6	SPS2L_HUMAN	SPATS2-like protein isoform a	116						cytoplasm|nucleolus				ovary(2)|pancreas(1)	3						AAGGACAGCTCGTCCACAGAT	0.542													10	19					0	0	0.006214	0	0
AOX1	316	broad.mit.edu	37	2	201488607	201488607	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:201488607C>T	uc002uvx.2	+	19	2126	c.2025C>T	c.(2023-2025)GTC>GTT	p.V675V	AOX1_uc010zhf.1_Silent_p.V231V|AOX1_uc010fsu.2_Silent_p.V41V	NM_001159	NP_001150	Q06278	ADO_HUMAN	aldehyde oxidase 1	675					inflammatory response|reactive oxygen species metabolic process	cytoplasm	2 iron, 2 sulfur cluster binding|aldehyde oxidase activity|flavin adenine dinucleotide binding|iron ion binding|NAD binding|xanthine dehydrogenase activity			ovary(4)|pancreas(1)|skin(1)	6					Brimonidine(DB00484)|Chlorpromazine(DB00477)|Famciclovir(DB00426)|Menadione(DB00170)|Methotrexate(DB00563)|NADH(DB00157)|Palonosetron(DB00377)|Penciclovir(DB00299)|Raloxifene(DB00481)|Zaleplon(DB00962)|Zonisamide(DB00909)	GTCAGCTTGTCTGTGCTGTGC	0.488													28	84					0	0	0.006320	0	0
ALS2CR11	151254	broad.mit.edu	37	2	202469367	202469367	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:202469367C>T	uc002uye.2	-	2	333	c.285G>A	c.(283-285)CAG>CAA	p.Q95Q	ALS2CR11_uc002uyf.2_Silent_p.Q95Q|ALS2CR11_uc010fti.2_Silent_p.Q95Q	NM_152525	NP_689738	Q53TS8	AL2SA_HUMAN	amyotrophic lateral sclerosis 2 (juvenile)	95										large_intestine(1)|ovary(1)|skin(1)	3						TTGGCGTCTCCTGTGTTATTT	0.328													33	63					0	0	0.007835	0	0
ALS2	57679	broad.mit.edu	37	2	202617878	202617878	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:202617878C>T	uc002uyo.2	-	7	2084	c.1728G>A	c.(1726-1728)GCG>GCA	p.A576A	ALS2_uc002uyp.3_Silent_p.A576A|ALS2_uc002uyq.2_Silent_p.A576A	NM_020919	NP_065970	Q96Q42	ALS2_HUMAN	alsin isoform 1	576	RCC1 4.				cell death|endosome organization|positive regulation of Rac GTPase activity|regulation of endosome size	centrosome|cytosol|early endosome|growth cone|lamellipodium|protein complex|ruffle	protein homodimerization activity|protein serine/threonine kinase activator activity|Rab GTPase binding|Rab guanyl-nucleotide exchange factor activity|Rac guanyl-nucleotide exchange factor activity|Ran guanyl-nucleotide exchange factor activity			skin(5)|lung(1)|breast(1)	7						CCTGGGATTTCGCAGTAAGTG	0.373													37	70					0	0	0.007835	0	0
BMPR2	659	broad.mit.edu	37	2	203420895	203420895	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:203420895C>T	uc002uzf.3	+	12	3655	c.2507C>T	c.(2506-2508)ACC>ATC	p.T836I	BMPR2_uc010ftr.2_Intron	NM_001204	NP_001195	Q13873	BMPR2_HUMAN	bone morphogenetic protein receptor type II	836	Cytoplasmic (Potential).				anterior/posterior pattern formation|BMP signaling pathway|cellular response to starvation|lung alveolus development|mesoderm formation|negative regulation of cell growth|negative regulation of systemic arterial blood pressure|negative regulation of vasoconstriction|positive regulation of BMP signaling pathway|positive regulation of bone mineralization|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of epithelial cell migration|positive regulation of osteoblast differentiation|positive regulation of pathway-restricted SMAD protein phosphorylation|regulation of lung blood pressure|transcription from RNA polymerase II promoter|vascular endothelial growth factor receptor signaling pathway	integral to plasma membrane	ATP binding|metal ion binding|transforming growth factor beta receptor activity			ovary(4)|breast(2)|large_intestine(1)|stomach(1)|pancreas(1)	9						GGCCAAACAACCAACATAGTG	0.468													22	32					0	0	0.012319	0	0
ICA1L	130026	broad.mit.edu	37	2	203680719	203680719	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:203680719C>T	uc002uzh.1	-	8	862	c.698G>A	c.(697-699)GGA>GAA	p.G233E	ICA1L_uc002uzi.1_Missense_Mutation_p.G233E	NM_138468	NP_612477	Q8NDH6	ICA1L_HUMAN	islet cell autoantigen 1,69kDa-like isoform 1	233	AH.										0						CTTCCAGAATCCAAGCAGTGT	0.388													55	178					0	0	0.014410	0	0
NBEAL1	65065	broad.mit.edu	37	2	203980784	203980784	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:203980784C>T	uc002uzt.3	+	17	2829	c.2496C>T	c.(2494-2496)TAC>TAT	p.Y832Y		NM_001114132	NP_001107604	Q6ZS30	NBEL1_HUMAN	neurobeachin-like 1 isoform 3	832							binding			ovary(1)|skin(1)	2						TTCTTTACTACACAGCAAAGG	0.383													98	299					0	0	0.014410	0	0
NBEAL1	65065	broad.mit.edu	37	2	204031988	204031988	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:204031988C>T	uc002uzt.3	+	37	6148	c.5815C>T	c.(5815-5817)CGA>TGA	p.R1939*	NBEAL1_uc002uzs.3_Nonsense_Mutation_p.R649*	NM_001114132	NP_001107604	Q6ZS30	NBEL1_HUMAN	neurobeachin-like 1 isoform 3	1939							binding			ovary(1)|skin(1)	2						TTCTCAAATTCGAGAGATTCA	0.368													112	215					0	0	0.014410	0	0
PARD3B	117583	broad.mit.edu	37	2	206165305	206165305	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:206165305C>T	uc002var.1	+	17	2444	c.2237C>T	c.(2236-2238)TCC>TTC	p.S746F	PARD3B_uc010fub.1_Missense_Mutation_p.S746F|PARD3B_uc002vao.1_Missense_Mutation_p.S746F|PARD3B_uc002vap.1_Missense_Mutation_p.S684F|PARD3B_uc002vaq.1_Intron	NM_152526	NP_689739	Q8TEW8	PAR3L_HUMAN	par-3 partitioning defective 3 homolog B isoform	746					cell cycle|cell division	endomembrane system|tight junction				skin(2)|ovary(1)|breast(1)	4		all_cancers(1;2.88e-06)|all_epithelial(1;3.23e-06)		Epithelial(149;0.0739)		AAGTCCAGCTCCTTGGAGAGT	0.537													21	76					0	0	0.010504	0	0
NRP2	8828	broad.mit.edu	37	2	206580992	206580992	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:206580992C>T	uc002vaw.2	+	3	1118	c.327C>T	c.(325-327)GCC>GCT	p.A109A	NRP2_uc002vat.2_Silent_p.A109A|NRP2_uc002vau.2_Silent_p.A109A|NRP2_uc002vav.2_Silent_p.A109A|NRP2_uc002vax.2_Silent_p.A109A|NRP2_uc002vay.2_Silent_p.A109A|NRP2_uc010fud.2_Silent_p.A109A	NM_201266	NP_957718	O60462	NRP2_HUMAN	neuropilin 2 isoform 1 precursor	109	Extracellular (Potential).|CUB 1.				angiogenesis|axon guidance|cell adhesion	integral to membrane|membrane fraction|plasma membrane	heparin binding|metal ion binding|semaphorin receptor activity|vascular endothelial growth factor receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4						GGAACATCGCCCCGCCCACCA	0.587													39	55					0	0	0.006230	0	0
NRP2	8828	broad.mit.edu	37	2	206608234	206608235	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:206608234_206608235GG>AA	uc002vaw.2	+	9	2390_2391	c.1599_1600GG>AA	c.(1597-1602)AAGGAC>AAAAAC	p.D534N	NRP2_uc002vat.2_Missense_Mutation_p.D534N|NRP2_uc002vau.2_Missense_Mutation_p.D534N|NRP2_uc002vav.2_Missense_Mutation_p.D534N|NRP2_uc002vax.2_Missense_Mutation_p.D534N|NRP2_uc002vay.2_Missense_Mutation_p.D534N|NRP2_uc010fud.2_Missense_Mutation_p.D534N	NM_201266	NP_957718	O60462	NRP2_HUMAN	neuropilin 2 isoform 1 precursor	534	Extracellular (Potential).|F5/8 type C 2.				angiogenesis|axon guidance|cell adhesion	integral to membrane|membrane fraction|plasma membrane	heparin binding|metal ion binding|semaphorin receptor activity|vascular endothelial growth factor receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4						TAAACGGCAAGGACTGGGAATA	0.545													20	25					0	0	0.004672	0	0
ZDBF2	57683	broad.mit.edu	37	2	207171060	207171060	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:207171060G>A	uc002vbp.2	+	5	2058	c.1808G>A	c.(1807-1809)AGA>AAA	p.R603K		NM_020923	NP_065974	Q9HCK1	ZDBF2_HUMAN	zinc finger, DBF-type containing 2	603							nucleic acid binding|zinc ion binding			ovary(3)	3						GTCAAAGGAAGAAACCTGAAA	0.403													9	37					0	0	0.004482	0	0
ZDBF2	57683	broad.mit.edu	37	2	207171359	207171359	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:207171359C>T	uc002vbp.2	+	5	2357	c.2107C>T	c.(2107-2109)CGT>TGT	p.R703C		NM_020923	NP_065974	Q9HCK1	ZDBF2_HUMAN	zinc finger, DBF-type containing 2	703							nucleic acid binding|zinc ion binding			ovary(3)	3						TCAGTCTAGCCGTTCTTCTCT	0.408													15	21					0	0	0.002450	0	0
DYTN	391475	broad.mit.edu	37	2	207572096	207572096	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:207572096C>T	uc002vbr.1	-	3	343	c.226G>A	c.(226-228)GAA>AAA	p.E76K		NM_001093730	NP_001087199	A2CJ06	DYTN_HUMAN	dystrotelin	76						plasma membrane	zinc ion binding			ovary(1)|central_nervous_system(1)	2				LUSC - Lung squamous cell carcinoma(261;0.082)|Epithelial(149;0.129)|Lung(261;0.153)		CCTGGGTTTTCCTCCCTGGCC	0.557													5	17					0	0	0.000602	0	0
FASTKD2	22868	broad.mit.edu	37	2	207655359	207655359	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:207655359C>T	uc002vbu.2	+	11	2372	c.1962C>T	c.(1960-1962)TTC>TTT	p.F654F	FASTKD2_uc002vbv.2_Silent_p.F654F|FASTKD2_uc002vbx.2_Silent_p.F654F|FASTKD2_uc002vbw.1_3'UTR	NM_001136193	NP_001129665	Q9NYY8	FAKD2_HUMAN	FAST kinase domains 2	654	RAP.				apoptosis|cellular respiration	mitochondrion	ATP binding|protein kinase activity			ovary(2)|skin(1)	3				LUSC - Lung squamous cell carcinoma(261;0.0718)|Epithelial(149;0.119)|Lung(261;0.138)		CCAGAGGATTCCTTGCTATGA	0.353													62	94					0	0	0.014410	0	0
PLEKHM3	389072	broad.mit.edu	37	2	208725854	208725854	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:208725854G>A	uc002vcl.2	-	7	2573	c.2083C>T	c.(2083-2085)CCT>TCT	p.P695S		NM_001080475	NP_001073944	Q6ZWE6	PKHM3_HUMAN	pleckstrin homology domain containing, family M,	695	Phorbol-ester/DAG-type.				intracellular signal transduction		metal ion binding			ovary(1)	1						TCCTCAAAAGGGTAGAGGATC	0.403													27	83					0	0	0.012213	0	0
PTH2R	5746	broad.mit.edu	37	2	209353869	209353869	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:209353869C>T	uc002vdb.2	+	11	1422	c.1209C>T	c.(1207-1209)TCC>TCT	p.S403S	PTH2R_uc010zjb.1_Silent_p.S414S|PTH2R_uc010fuo.1_RNA	NM_005048	NP_005039	P49190	PTH2R_HUMAN	parathyroid hormone 2 receptor precursor	403	Helical; Name=7; (Potential).					integral to plasma membrane	parathyroid hormone receptor activity			ovary(1)|breast(1)|skin(1)	3				Epithelial(149;0.0684)|Lung(261;0.0785)|LUSC - Lung squamous cell carcinoma(261;0.0836)		TCTTCAACTCCTTTCAGGTAA	0.468													18	31					0	0	0.007413	0	0
ACADL	33	broad.mit.edu	37	2	211070512	211070512	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:211070512G>A	uc002vdz.3	-	6	840	c.612C>T	c.(610-612)ATC>ATT	p.I204I		NM_001608	NP_001599	P28330	ACADL_HUMAN	long-chain acyl-CoA dehydrogenase precursor	204					carnitine catabolic process|carnitine metabolic process, CoA-linked|fatty acid beta-oxidation using acyl-CoA dehydrogenase|negative regulation of fatty acid biosynthetic process|negative regulation of fatty acid oxidation|regulation of cholesterol metabolic process|temperature homeostasis	mitochondrial matrix	long-chain-acyl-CoA dehydrogenase activity|palmitoyl-CoA oxidase activity				0		Renal(323;0.202)		Epithelial(149;0.00631)|Lung(261;0.0438)|LUSC - Lung squamous cell carcinoma(261;0.0466)|all cancers(144;0.0621)		ACCCATTACTGATGAACACCT	0.383													25	48					0	0	0.007291	0	0
MYL1	4632	broad.mit.edu	37	2	211158512	211158512	+	Missense_Mutation	SNP	T	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:211158512T>A	uc002vec.2	-	5	620	c.491A>T	c.(490-492)AAA>ATA	p.K164I	MYL1_uc002veb.2_Missense_Mutation_p.K120I	NM_079420	NP_524144	P05976	MYL1_HUMAN	fast skeletal myosin alkali light chain 1	164	EF-hand 3.				muscle filament sliding|muscle organ development	cytosol|muscle myosin complex|sarcomere	calcium ion binding|structural constituent of muscle			ovary(1)	1				Epithelial(149;0.00573)|Lung(261;0.0422)|LUSC - Lung squamous cell carcinoma(261;0.0444)|all cancers(144;0.057)		TTCTTCCTCTTTCATCTTTTC	0.448													63	124					0	0	0.014410	0	0
ERBB4	2066	broad.mit.edu	37	2	212652858	212652858	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:212652858C>T	uc002veg.1	-	4	546	c.448G>A	c.(448-450)GAC>AAC	p.D150N	ERBB4_uc002veh.1_Missense_Mutation_p.D150N|ERBB4_uc010zji.1_Missense_Mutation_p.D150N|ERBB4_uc010zjj.1_Missense_Mutation_p.D150N|ERBB4_uc010fut.1_Missense_Mutation_p.D150N	NM_005235	NP_005226	Q15303	ERBB4_HUMAN	v-erb-a erythroblastic leukemia viral oncogene	150	Extracellular (Potential).				cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent|transmembrane receptor protein tyrosine kinase signaling pathway	basolateral plasma membrane|cytoplasm|integral to membrane|nucleus	ATP binding|protein binding|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(21)|skin(5)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	33		Renal(323;0.06)|Lung NSC(271;0.197)		UCEC - Uterine corpus endometrioid carcinoma (47;0.214)|Epithelial(149;5.86e-06)|all cancers(144;2.95e-05)|Lung(261;0.00244)|LUSC - Lung squamous cell carcinoma(224;0.00266)		TTGTTCTGGTCTACATAGACT	0.348										TSP Lung(8;0.080)			4	23					0	0	0.009096	0	0
SPAG16	79582	broad.mit.edu	37	2	214354720	214354720	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:214354720C>T	uc002veq.2	+	10	1068	c.976C>T	c.(976-978)CCA>TCA	p.P326S	SPAG16_uc010fuz.1_Missense_Mutation_p.P177S|SPAG16_uc002ver.2_Missense_Mutation_p.P272S|SPAG16_uc010zjk.1_Missense_Mutation_p.P232S	NM_024532	NP_078808	Q8N0X2	SPG16_HUMAN	sperm associated antigen 16 isoform 1	326					cilium assembly	cilium axoneme|flagellar axoneme				ovary(1)|skin(1)	2		Renal(323;0.00461)		UCEC - Uterine corpus endometrioid carcinoma (47;0.0525)|Epithelial(149;7.07e-07)|all cancers(144;7.96e-05)|Lung(261;0.00255)|LUSC - Lung squamous cell carcinoma(224;0.00599)		GCAACCAAATCCAAACCTGAA	0.353													17	48					0	0	0.008871	0	0
VWC2L	402117	broad.mit.edu	37	2	215278933	215278933	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:215278933C>T	uc002vet.2	+	2	146	c.16C>T	c.(16-18)CAT>TAT	p.H6Y	VWC2L_uc010zjl.1_Missense_Mutation_p.H6Y	NM_001080500	NP_001073969	B2RUY7	VWC2L_HUMAN	von Willebrand factor C domain-containing	6						extracellular region					0						TCTTCATATTCATGAAGCTTG	0.458													26	42					0	0	0.010818	0	0
VWC2L	402117	broad.mit.edu	37	2	215279299	215279299	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:215279299G>A	uc002vet.2	+	2	512	c.382G>A	c.(382-384)GAA>AAA	p.E128K	VWC2L_uc010zjl.1_Missense_Mutation_p.E128K	NM_001080500	NP_001073969	B2RUY7	VWC2L_HUMAN	von Willebrand factor C domain-containing	128	VWFC 2.					extracellular region					0						AATCTTGGAGGAATTTAAGGT	0.353													5	27					0	0	0.000602	0	0
ABCA12	26154	broad.mit.edu	37	2	215819948	215819948	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:215819948G>A	uc002vew.2	-	43	6591	c.6371C>T	c.(6370-6372)TCC>TTC	p.S2124F	ABCA12_uc002vev.2_Missense_Mutation_p.S1806F|ABCA12_uc010zjn.1_Missense_Mutation_p.S1051F	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	2124					cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		CTTTTCCTTGGAAAGAAAGTA	0.368													9	24					0	0	0.004482	0	0
ABCA12	26154	broad.mit.edu	37	2	215833510	215833510	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:215833510C>T	uc002vew.2	-	38	5932	c.5712G>A	c.(5710-5712)GGG>GGA	p.G1904G	ABCA12_uc002vev.2_Silent_p.G1586G|ABCA12_uc010zjn.1_Silent_p.G831G	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	1904					cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		TCAAAGGCAGCCCAAAACTCC	0.343													50	99					0	0	0.014410	0	0
ABCA12	26154	broad.mit.edu	37	2	215843674	215843674	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:215843674C>T	uc002vew.2	-	32	5051	c.4831G>A	c.(4831-4833)GAT>AAT	p.D1611N	ABCA12_uc002vev.2_Missense_Mutation_p.D1293N|ABCA12_uc010zjn.1_Missense_Mutation_p.D538N	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	1611					cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		CCCCCAATATCCTCCTTGAGG	0.493													14	37					0	0	0.002450	0	0
ABCA12	26154	broad.mit.edu	37	2	215845252	215845252	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:215845252C>T	uc002vew.2	-	31	4915	c.4695G>A	c.(4693-4695)AAG>AAA	p.K1565K	ABCA12_uc002vev.2_Silent_p.K1247K|ABCA12_uc010zjn.1_Silent_p.K492K	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	1565	ABC transporter 1.				cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		CAAAGGCTTCCTTGAGGTAAA	0.488													30	54					0	0	0.010818	0	0
ABCA12	26154	broad.mit.edu	37	2	215872484	215872484	+	Silent	SNP	G	A	A	rs142281650		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:215872484G>A	uc002vew.2	-	19	2779	c.2559C>T	c.(2557-2559)TTC>TTT	p.F853F	ABCA12_uc002vev.2_Silent_p.F535F|ABCA12_uc010zjn.1_5'UTR	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	853					cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		TTAACAGATGGAAGGAATTCA	0.378													14	36					0	0	0.003163	0	0
TNS1	7145	broad.mit.edu	37	2	218669209	218669209	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:218669209G>A	uc002vgt.2	-	33	5579	c.5181C>T	c.(5179-5181)GTC>GTT	p.V1727V	TNS1_uc002vgr.2_Silent_p.V1713V|TNS1_uc002vgs.2_Silent_p.V1706V|TNS1_uc002vgq.2_Silent_p.V227V	NM_022648	NP_072174	Q9HBL0	TENS1_HUMAN	tensin	1727						cytoplasm|cytoskeleton|focal adhesion	actin binding			ovary(3)|breast(1)	4		Renal(207;0.0483)|Lung NSC(271;0.213)		Epithelial(149;4.43e-06)|all cancers(144;0.000653)|LUSC - Lung squamous cell carcinoma(224;0.0091)|Lung(261;0.013)		CATTCAGCATGACCTTGGAGA	0.627													18	65					0	0	0.007413	0	0
CXCR2	3579	broad.mit.edu	37	2	219000175	219000175	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:219000175C>T	uc002vgz.1	+	4	876	c.651C>T	c.(649-651)TCC>TCT	p.S217S	CXCR2_uc002vha.1_Silent_p.S217S|CXCR2_uc002vhb.1_Silent_p.S217S	NM_001557	NP_001548	P25025	CXCR2_HUMAN	interleukin 8 receptor beta	217	Helical; Name=5; (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|cellular defense response|dendritic cell chemotaxis|inflammatory response|neutrophil activation|neutrophil chemotaxis|positive regulation of cell proliferation	cell surface|integral to plasma membrane|mast cell granule	interleukin-8 receptor activity			lung(1)|breast(1)	2						TGCCCCAGTCCTTTGGCTTCA	0.557													34	92					0	0	0.004289	0	0
STK36	27148	broad.mit.edu	37	2	219561890	219561890	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:219561890C>T	uc002viu.2	+	23	2981	c.2715C>T	c.(2713-2715)TCC>TCT	p.S905S	STK36_uc002viv.2_Silent_p.S884S|STK36_uc002viw.2_Silent_p.S83S|STK36_uc002vix.2_5'UTR	NM_015690	NP_056505	Q9NRP7	STK36_HUMAN	serine/threonine kinase 36	905					cilium assembly|positive regulation of hh target transcription factor activity|positive regulation of smoothened signaling pathway|post-embryonic development	aggresome|cytoplasm|focal adhesion|intermediate filament cytoskeleton|nucleus	ATP binding|protein serine/threonine kinase activity|transcription factor binding			ovary(4)|stomach(2)|lung(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)	11		Renal(207;0.0915)		Epithelial(149;9.65e-07)|all cancers(144;0.000174)|LUSC - Lung squamous cell carcinoma(224;0.00813)|Lung(261;0.00984)		TTTCGCTATCCAGTCCACCAA	0.527													25	91					0	0	0.003954	0	0
TTLL4	9654	broad.mit.edu	37	2	219612839	219612839	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:219612839C>T	uc002viy.2	+	12	2760	c.2390C>T	c.(2389-2391)TCC>TTC	p.S797F	TTLL4_uc010zkl.1_Missense_Mutation_p.S632F|TTLL4_uc010fvx.2_Missense_Mutation_p.S733F|TTLL4_uc010zkm.1_5'UTR	NM_014640	NP_055455	Q14679	TTLL4_HUMAN	tubulin tyrosine ligase-like family, member 4	797	TTL.				protein polyglutamylation	cilium|microtubule basal body	ATP binding|tubulin binding|tubulin-tyrosine ligase activity			ovary(2)|skin(1)	3		Renal(207;0.0915)		Epithelial(149;5.03e-07)|all cancers(144;0.000106)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.0101)		TATTCGCCTTCCATGAAGAGC	0.468													21	44					0	0	0.012319	0	0
CCDC108	255101	broad.mit.edu	37	2	219868948	219868948	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:219868948C>T	uc002vjl.1	-	33	5365	c.5281G>A	c.(5281-5283)GAA>AAA	p.E1761K	uc010fvz.1_5'Flank|MIR375_hsa-mir-375|MI0000783_5'Flank	NM_194302	NP_919278	Q6ZU64	CC108_HUMAN	coiled-coil domain containing 108 isoform 1	1761	Glu-rich.					integral to membrane	structural molecule activity			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4		Renal(207;0.0915)		Epithelial(149;1.12e-06)|all cancers(144;0.000196)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		tccccctcttccttctTTCCC	0.274													17	56					0	0	0.008871	0	0
PTPRN	5798	broad.mit.edu	37	2	220168539	220168539	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:220168539C>T	uc002vkz.2	-	4	384	c.295G>A	c.(295-297)GAT>AAT	p.D99N	PTPRN_uc010zlc.1_Missense_Mutation_p.D9N|PTPRN_uc002vla.2_Missense_Mutation_p.D99N	NM_002846	NP_002837	Q16849	PTPRN_HUMAN	protein tyrosine phosphatase, receptor type, N	99	Extracellular (Potential).				response to reactive oxygen species	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(2)|lung(1)|skin(1)	4		Renal(207;0.0474)		Epithelial(149;4.22e-07)|all cancers(144;8.82e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)|STAD - Stomach adenocarcinoma(1183;0.0875)		GTGAGGTCATCGTGCCAGGAC	0.577													13	15					0	0	0.013537	0	0
SPEG	10290	broad.mit.edu	37	2	220332071	220332071	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:220332071C>T	uc010fwg.2	+	10	3057	c.3057C>T	c.(3055-3057)TTC>TTT	p.F1019F		NM_005876	NP_005867	Q15772	SPEG_HUMAN	SPEG complex locus	1019	Ig-like 4.				muscle organ development|negative regulation of cell proliferation	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(9)|ovary(4)|central_nervous_system(1)	14		Renal(207;0.0183)		Epithelial(149;4.5e-10)|all cancers(144;7.93e-08)|Lung(261;0.00639)|LUSC - Lung squamous cell carcinoma(224;0.00829)|READ - Rectum adenocarcinoma(5;0.163)		AGATGCATTTCGATGGCCGCA	0.577													17	68					0	0	0.004007	0	0
OBSL1	23363	broad.mit.edu	37	2	220422727	220422727	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:220422727G>A	uc010fwk.2	-	11	3665	c.3608C>T	c.(3607-3609)CCC>CTC	p.P1203L	OBSL1_uc002vmh.1_Missense_Mutation_p.P194L|OBSL1_uc010zli.1_Missense_Mutation_p.P102L|OBSL1_uc010fwl.1_Missense_Mutation_p.P678L	NM_015311	NP_056126	O75147	OBSL1_HUMAN	obscurin-like 1	1203	Ig-like 10.				cardiac myofibril assembly	intercalated disc|M band|perinuclear region of cytoplasm|Z disc	cytoskeletal adaptor activity				0		Renal(207;0.0376)		Epithelial(149;2.02e-07)|all cancers(144;1.68e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00834)		CCAGACCACGGGGGCGCCAGC	0.682													10	15					0	0	0.006214	0	0
EPHA4	2043	broad.mit.edu	37	2	222301175	222301175	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:222301175C>T	uc002vmq.2	-	13	2332	c.2290G>A	c.(2290-2292)GAT>AAT	p.D764N	EPHA4_uc002vmr.2_Missense_Mutation_p.D764N|EPHA4_uc010zlm.1_Missense_Mutation_p.D705N|EPHA4_uc010zln.1_Missense_Mutation_p.D764N	NM_004438	NP_004429	P54764	EPHA4_HUMAN	ephrin receptor EphA4 precursor	764	Protein kinase.|Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(6)|large_intestine(2)|central_nervous_system(2)|urinary_tract(1)|skin(1)	12		Renal(207;0.0183)		Epithelial(121;5.38e-09)|all cancers(144;2.47e-06)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(261;0.0154)		ATGCCAAAATCAGACACTTTG	0.493													11	34					0	0	0.010729	0	0
EPHA4	2043	broad.mit.edu	37	2	222365816	222365816	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:222365816G>A	uc002vmq.2	-	4	942	c.900C>T	c.(898-900)GTC>GTT	p.V300V	EPHA4_uc002vmr.2_Silent_p.V300V|EPHA4_uc010zlm.1_Silent_p.V241V|EPHA4_uc010zln.1_Silent_p.V300V	NM_004438	NP_004429	P54764	EPHA4_HUMAN	ephrin receptor EphA4 precursor	300	Cys-rich.|Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(6)|large_intestine(2)|central_nervous_system(2)|urinary_tract(1)|skin(1)	12		Renal(207;0.0183)		Epithelial(121;5.38e-09)|all cancers(144;2.47e-06)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(261;0.0154)		CTCCTTCCCAGACAGAGTAGC	0.522													20	39					0	0	0.012319	0	0
FARSB	10056	broad.mit.edu	37	2	223499232	223499232	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:223499232G>A	uc002vne.1	-	6	519	c.484C>T	c.(484-486)CAT>TAT	p.H162Y	FARSB_uc010zlq.1_Missense_Mutation_p.H182Y|FARSB_uc002vnf.1_Missense_Mutation_p.H63Y	NM_005687	NP_005678	Q9NSD9	SYFB_HUMAN	phenylalanyl-tRNA synthetase, beta subunit	162					phenylalanyl-tRNA aminoacylation	cytosol|soluble fraction	ATP binding|magnesium ion binding|phenylalanine-tRNA ligase activity|RNA binding			ovary(1)	1		Renal(207;0.0183)		Epithelial(121;3.47e-10)|all cancers(144;1.86e-07)|LUSC - Lung squamous cell carcinoma(224;0.00871)|Lung(261;0.011)	L-Phenylalanine(DB00120)	TCCAAATCATGGGTACCAATG	0.433													7	30					0	0	0.003080	0	0
MRPL44	65080	broad.mit.edu	37	2	224822312	224822312	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:224822312C>T	uc002vnr.3	+	1	192	c.123C>T	c.(121-123)TTC>TTT	p.F41F		NM_022915	NP_075066	Q9H9J2	RM44_HUMAN	mitochondrial ribosomal protein L44 precursor	41					RNA processing	mitochondrion|ribosome	double-stranded RNA binding|protein binding|ribonuclease III activity			central_nervous_system(1)	1		all_lung(227;0.00679)|Lung NSC(271;0.00855)|Renal(207;0.0112)|all_hematologic(139;0.189)		Epithelial(121;2.51e-10)|all cancers(144;7.89e-08)|Lung(261;0.00705)|LUSC - Lung squamous cell carcinoma(224;0.008)		CCTTCCGCTTCCAGAAGGAGT	0.692													4	16					0	0	0.000602	0	0
MRPL44	65080	broad.mit.edu	37	2	224828523	224828523	+	Missense_Mutation	SNP	G	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:224828523G>C	uc002vnr.3	+	3	768	c.699G>C	c.(697-699)AAG>AAC	p.K233N		NM_022915	NP_075066	Q9H9J2	RM44_HUMAN	mitochondrial ribosomal protein L44 precursor	233					RNA processing	mitochondrion|ribosome	double-stranded RNA binding|protein binding|ribonuclease III activity			central_nervous_system(1)	1		all_lung(227;0.00679)|Lung NSC(271;0.00855)|Renal(207;0.0112)|all_hematologic(139;0.189)		Epithelial(121;2.51e-10)|all cancers(144;7.89e-08)|Lung(261;0.00705)|LUSC - Lung squamous cell carcinoma(224;0.008)		AGATGTGGAAGATAATAAATC	0.343													16	20					0	0	0.012319	0	0
KIAA1486	57624	broad.mit.edu	37	2	226447249	226447249	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:226447249G>A	uc002voe.2	+	4	1291	c.1116G>A	c.(1114-1116)ATG>ATA	p.M372I	KIAA1486_uc010fxa.1_Intron|KIAA1486_uc002vof.1_Missense_Mutation_p.M142I	NM_020864	NP_065915	Q9P242	K1486_HUMAN	hypothetical protein LOC57624	372	Pro-rich.									ovary(2)|central_nervous_system(1)	3		Renal(207;0.0112)|all_lung(227;0.0477)|Lung NSC(271;0.0644)|all_hematologic(139;0.101)|Esophageal squamous(248;0.129)		Epithelial(121;6.73e-10)|all cancers(144;4.32e-07)|Lung(261;0.0161)|LUSC - Lung squamous cell carcinoma(224;0.0223)		TGTCTTACATGAAACAGCCAG	0.667													7	3					0	0	0.004482	0	0
KIAA1486	57624	broad.mit.edu	37	2	226516185	226516185	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:226516185G>A	uc002voe.2	+	6	2041	c.1866G>A	c.(1864-1866)TCG>TCA	p.S622S	KIAA1486_uc010fxa.1_3'UTR|KIAA1486_uc002vof.1_Silent_p.S392S	NM_020864	NP_065915	Q9P242	K1486_HUMAN	hypothetical protein LOC57624	622										ovary(2)|central_nervous_system(1)	3		Renal(207;0.0112)|all_lung(227;0.0477)|Lung NSC(271;0.0644)|all_hematologic(139;0.101)|Esophageal squamous(248;0.129)		Epithelial(121;6.73e-10)|all cancers(144;4.32e-07)|Lung(261;0.0161)|LUSC - Lung squamous cell carcinoma(224;0.0223)		GGTCTGCGTCGACGTCAGGTG	0.493													15	124					0	0	0.003163	0	0
COL4A4	1286	broad.mit.edu	37	2	227872289	227872289	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:227872289C>T	uc010zlt.1	-	47	5479	c.4825G>A	c.(4825-4827)GAC>AAC	p.D1609N		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	1609	Collagen IV NC1.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		CCTCCTTGGTCCCCAGCTCCT	0.567													10	38					0	0	0.008291	0	0
COL4A4	1286	broad.mit.edu	37	2	227898195	227898195	+	Missense_Mutation	SNP	G	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:227898195G>T	uc010zlt.1	-	38	4162	c.3508C>A	c.(3508-3510)CCC>ACC	p.P1170T		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	1170	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		GATCCGGAGGGACCTGAAAAA	0.542											OREG0015250	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	12	31					2.61681e-11	2.82162e-11	0.002450	1	0
COL4A4	1286	broad.mit.edu	37	2	227907822	227907822	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:227907822G>A	uc010zlt.1	-	36	4022	c.3368C>T	c.(3367-3369)CCT>CTT	p.P1123L		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	1123	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		AGAGGAGCCAGGTGGCCCTGG	0.483													13	23					0	0	0.003163	0	0
COL4A4	1286	broad.mit.edu	37	2	227954672	227954672	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:227954672C>T	uc010zlt.1	-	21	2025	c.1371G>A	c.(1369-1371)GTG>GTA	p.V457V		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	457	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		TACAGTATATCACTGTCAAGG	0.478													15	20					0	0	0.004007	0	0
COL4A3	1285	broad.mit.edu	37	2	228122341	228122341	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:228122341C>T	uc002vom.1	+	18	1172	c.1010C>T	c.(1009-1011)CCT>CTT	p.P337L	COL4A3_uc002von.1_Missense_Mutation_p.P337L|COL4A3_uc002voo.1_Missense_Mutation_p.P337L|COL4A3_uc002vop.1_Missense_Mutation_p.P337L|uc002voq.1_Intron|uc002vor.1_Intron	NM_000091	NP_000082	Q01955	CO4A3_HUMAN	alpha 3 type IV collagen isoform 1 precursor	337	Triple-helical region.				activation of caspase activity|axon guidance|blood circulation|cell adhesion|cell proliferation|cell surface receptor linked signaling pathway|glomerular basement membrane development|induction of apoptosis|negative regulation of angiogenesis|negative regulation of cell proliferation|sensory perception of sound	collagen type IV	extracellular matrix structural constituent|integrin binding|metalloendopeptidase inhibitor activity			skin(2)|ovary(1)	3		all_lung(227;0.00101)|Lung NSC(271;0.00278)|Renal(207;0.0112)|Ovarian(221;0.0129)|all_hematologic(139;0.211)|Esophageal squamous(248;0.247)		Epithelial(121;1.17e-46)|all cancers(144;6.87e-42)|Lung(261;0.0137)|LUSC - Lung squamous cell carcinoma(224;0.0187)		GACATTGGCCCTCCAGGATTT	0.358													7	38					0	0	0.004482	0	0
COL4A3	1285	broad.mit.edu	37	2	228157935	228157935	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:228157935G>A	uc002vom.1	+	38	3401	c.3239G>A	c.(3238-3240)GGA>GAA	p.G1080E	COL4A3_uc002von.1_Missense_Mutation_p.G1080E|COL4A3_uc002voo.1_Missense_Mutation_p.G1080E|COL4A3_uc002vop.1_Missense_Mutation_p.G1080E|uc002voq.1_Intron|uc002vor.1_Intron	NM_000091	NP_000082	Q01955	CO4A3_HUMAN	alpha 3 type IV collagen isoform 1 precursor	1080	Triple-helical region.				activation of caspase activity|axon guidance|blood circulation|cell adhesion|cell proliferation|cell surface receptor linked signaling pathway|glomerular basement membrane development|induction of apoptosis|negative regulation of angiogenesis|negative regulation of cell proliferation|sensory perception of sound	collagen type IV	extracellular matrix structural constituent|integrin binding|metalloendopeptidase inhibitor activity			skin(2)|ovary(1)	3		all_lung(227;0.00101)|Lung NSC(271;0.00278)|Renal(207;0.0112)|Ovarian(221;0.0129)|all_hematologic(139;0.211)|Esophageal squamous(248;0.247)		Epithelial(121;1.17e-46)|all cancers(144;6.87e-42)|Lung(261;0.0137)|LUSC - Lung squamous cell carcinoma(224;0.0187)		GGTGATATGGGAAAGAAAGGA	0.498													8	18					0	0	0.003080	0	0
COL4A3	1285	broad.mit.edu	37	2	228169791	228169791	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:228169791G>A	uc002vom.1	+	47	4406	c.4244G>A	c.(4243-4245)GGA>GAA	p.G1415E	COL4A3_uc002von.1_Missense_Mutation_p.G1415E|COL4A3_uc002voo.1_Missense_Mutation_p.G1415E|COL4A3_uc002vop.1_Missense_Mutation_p.G1415E|uc002voq.1_Intron|uc002vor.1_Intron|COL4A3_uc010fxf.1_5'Flank	NM_000091	NP_000082	Q01955	CO4A3_HUMAN	alpha 3 type IV collagen isoform 1 precursor	1415	Triple-helical region.				activation of caspase activity|axon guidance|blood circulation|cell adhesion|cell proliferation|cell surface receptor linked signaling pathway|glomerular basement membrane development|induction of apoptosis|negative regulation of angiogenesis|negative regulation of cell proliferation|sensory perception of sound	collagen type IV	extracellular matrix structural constituent|integrin binding|metalloendopeptidase inhibitor activity			skin(2)|ovary(1)	3		all_lung(227;0.00101)|Lung NSC(271;0.00278)|Renal(207;0.0112)|Ovarian(221;0.0129)|all_hematologic(139;0.211)|Esophageal squamous(248;0.247)		Epithelial(121;1.17e-46)|all cancers(144;6.87e-42)|Lung(261;0.0137)|LUSC - Lung squamous cell carcinoma(224;0.0187)		GGTTCTAAAGGAGAGCCAGGT	0.488													8	18					0	0	0.004482	0	0
WDR69	164781	broad.mit.edu	37	2	228769694	228769694	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:228769694G>A	uc002vpn.1	+	8	777	c.698G>A	c.(697-699)AGA>AAA	p.R233K	WDR69_uc010zlw.1_Missense_Mutation_p.R218K|WDR69_uc002vpo.1_RNA	NM_178821	NP_849143	Q8N136	WDR69_HUMAN	WD repeat domain 69	233	WD 4.									breast(1)	1		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;1.22e-10)|all cancers(144;8.11e-08)|Lung(261;0.011)|LUSC - Lung squamous cell carcinoma(224;0.0148)		TCAGGAGACAGAATCATCACG	0.408													38	76					0	0	0.014410	0	0
SPHKAP	80309	broad.mit.edu	37	2	228856032	228856032	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:228856032C>T	uc002vpq.2	-	10	4779	c.4732G>A	c.(4732-4734)GAA>AAA	p.E1578K	SPHKAP_uc002vpp.2_Missense_Mutation_p.E1549K|SPHKAP_uc010zlx.1_Intron	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	1578						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		TTCTTTTCTTCTACTAATTCA	0.393													22	45					0	0	0.003330	0	0
SPHKAP	80309	broad.mit.edu	37	2	228883574	228883574	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:228883574C>T	uc002vpq.2	-	7	2043	c.1996G>A	c.(1996-1998)GAA>AAA	p.E666K	SPHKAP_uc002vpp.2_Missense_Mutation_p.E666K|SPHKAP_uc010zlx.1_Missense_Mutation_p.E666K	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	666						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		TGTGCCAGTTCATTCCTGACG	0.443													40	64					0	0	0.008740	0	0
SPHKAP	80309	broad.mit.edu	37	2	228883655	228883656	+	Missense_Mutation	DNP	AG	GA	GA			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:228883655_228883656AG>GA	uc002vpq.2	-	7	1961_1962	c.1914_1915CT>TC	c.(1912-1917)GACTTT>GATCTT	p.F639L	SPHKAP_uc002vpp.2_Missense_Mutation_p.F639L|SPHKAP_uc010zlx.1_Missense_Mutation_p.F639L	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	639						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		GAGTCCAGAAAGTCTCCAATGC	0.485													17	21					0	0	0.004672	0	0
SPHKAP	80309	broad.mit.edu	37	2	228884334	228884334	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:228884334G>A	uc002vpq.2	-	7	1283	c.1236C>T	c.(1234-1236)TCC>TCT	p.S412S	SPHKAP_uc002vpp.2_Silent_p.S412S|SPHKAP_uc010zlx.1_Silent_p.S412S	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	412						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		GGGGTAATGTGGACTGAGATT	0.438													30	51					0	0	0.009535	0	0
PID1	55022	broad.mit.edu	37	2	229890656	229890656	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:229890656C>T	uc002vpr.3	-	3	483	c.445G>A	c.(445-447)GAC>AAC	p.D149N	PID1_uc002vps.3_Missense_Mutation_p.D147N|PID1_uc002vpt.3_Missense_Mutation_p.D116N|PID1_uc002vpu.3_Missense_Mutation_p.D67N	NM_001100818	NP_001094288	Q7Z2X4	PCLI1_HUMAN	phosphotyrosine interaction domain containing 1	149	PID.					cytoplasm				breast(3)|skin(1)	4		Renal(207;0.0112)|all_lung(227;0.0191)|Lung NSC(271;0.0851)|all_hematologic(139;0.104)|Acute lymphoblastic leukemia(138;0.171)		Epithelial(121;3.08e-11)|all cancers(144;2.28e-08)|LUSC - Lung squamous cell carcinoma(224;0.0145)|Lung(261;0.0189)		CCTTTGTGGTCGAGATGATGG	0.587													11	46					0	0	0.001855	0	0
ITM2C	81618	broad.mit.edu	37	2	231742769	231742769	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:231742769C>T	uc002vqz.2	+	6	879	c.759C>T	c.(757-759)TTC>TTT	p.F253F	ITM2C_uc002vra.2_Silent_p.F206F|ITM2C_uc002vrb.2_Silent_p.F216F|ITM2C_uc002vrc.2_Silent_p.F142F|ITM2C_uc002vrd.2_Silent_p.F105F	NM_030926	NP_112188	Q9NQX7	ITM2C_HUMAN	integral membrane protein 2C isoform 1	253					negative regulation of neuron projection development|neuron differentiation	Golgi apparatus|integral to membrane|lysosomal membrane|perinuclear region of cytoplasm	beta-amyloid binding				0		Renal(207;0.0112)|all_lung(227;0.0741)|all_hematologic(139;0.0748)|Acute lymphoblastic leukemia(138;0.167)|Lung NSC(271;0.204)		Epithelial(121;8.47e-12)|all cancers(144;3.44e-09)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(119;0.0142)		TCCGCCACTTCGAGAACACCT	0.582													14	35					0	0	0.003163	0	0
ALPPL2	251	broad.mit.edu	37	2	233272048	233272049	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:233272048_233272049GG>AA	uc002vss.3	+	3	290_291	c.237_238GG>AA	c.(235-240)AAGGAC>AAAAAC	p.D80N		NM_031313	NP_112603	P10696	PPBN_HUMAN	placental-like alkaline phosphatase	80					phosphorylation	anchored to membrane|plasma membrane	alkaline phosphatase activity|metal ion binding			skin(1)	1		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;4.45e-22)|Kidney(3;4.42e-11)|KIRC - Kidney renal clear cell carcinoma(3;1.9e-09)|BRCA - Breast invasive adenocarcinoma(100;0.000767)|Lung(119;0.00566)|LUSC - Lung squamous cell carcinoma(224;0.00746)|STAD - Stomach adenocarcinoma(3;0.0181)|GBM - Glioblastoma multiforme(43;0.196)	Amifostine(DB01143)|Levamisole(DB00848)	GGCAGAAGAAGGACAAACTGGG	0.584													4	43					0	0	0.004672	0	0
ECEL1	9427	broad.mit.edu	37	2	233346544	233346544	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:233346544C>T	uc002vsv.2	-	13	2017	c.1812G>A	c.(1810-1812)GGG>GGA	p.G604G	ECEL1_uc010fya.1_Silent_p.G602G|ECEL1_uc010fyb.1_Silent_p.G311G	NM_004826	NP_004817	O95672	ECEL1_HUMAN	endothelin converting enzyme-like 1	604	Lumenal (Potential).				neuropeptide signaling pathway|proteolysis	integral to plasma membrane	metal ion binding|metalloendopeptidase activity			central_nervous_system(2)	2		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;7.17e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000771)|Lung(119;0.00213)|LUSC - Lung squamous cell carcinoma(224;0.00746)		TGCCGATGCCCCCGTAGTTGA	0.677													11	41					0	0	0.010729	0	0
NEU2	4759	broad.mit.edu	37	2	233898940	233898940	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:233898940C>T	uc010zmn.1	+	2	316	c.316C>T	c.(316-318)CCT>TCT	p.P106S		NM_005383	NP_005374	Q9Y3R4	NEUR2_HUMAN	neuraminidase 2	106							exo-alpha-sialidase activity				0		Breast(86;0.00279)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0271)|Acute lymphoblastic leukemia(138;0.0326)|Lung NSC(271;0.0839)		Epithelial(121;7.17e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000311)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00942)|GBM - Glioblastoma multiforme(43;0.0488)		CATTGCCATCCCTGGGCAAGT	0.647													24	43					0	0	0.003330	0	0
INPP5D	3635	broad.mit.edu	37	2	233925234	233925234	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:233925234G>A	uc010zmo.1	+	1	199	c.46G>A	c.(46-48)GAG>AAG	p.E16K	INPP5D_uc010zmp.1_Missense_Mutation_p.E16K	NM_001017915	NP_001017915	Q92835	SHIP1_HUMAN	SH2 containing inositol phosphatase isoform a	16	SH2.				apoptosis|blood coagulation|leukocyte migration|T cell receptor signaling pathway	cytosol	inositol-polyphosphate 5-phosphatase activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|SH3 domain binding			ovary(1)|central_nervous_system(1)	2		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0273)|Acute lymphoblastic leukemia(138;0.0328)|Lung NSC(271;0.0843)		Epithelial(121;1.16e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000479)|LUSC - Lung squamous cell carcinoma(224;0.00655)|Lung(119;0.00802)|GBM - Glioblastoma multiforme(43;0.0185)		CTCCAAGGCGGAGGAGCTGCT	0.677													8	24					0	0	0.003080	0	0
UGT1A8	54576	broad.mit.edu	37	2	234527080	234527080	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:234527080G>A	uc002vup.2	+	1	790	c.727G>A	c.(727-729)GAT>AAT	p.D243N	UGT1A8_uc010zmv.1_Missense_Mutation_p.D243N	NM_019076	NP_061949	Q9HAW9	UD18_HUMAN	UDP glycosyltransferase 1 family, polypeptide A8	243					drug metabolic process|fatty acid metabolic process|flavone metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	enzyme inhibitor activity|fatty acid binding|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity|steroid binding			ovary(2)	2		Breast(86;0.000766)|all_lung(227;0.00271)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0334)|Lung NSC(271;0.0461)|Lung SC(224;0.128)		Epithelial(121;2.56e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000482)|Lung(119;0.00404)|LUSC - Lung squamous cell carcinoma(224;0.008)		CACAGCATATGATCTCTACAG	0.408													68	107					0	0	0.014410	0	0
UGT1A10	54575	broad.mit.edu	37	2	234546024	234546024	+	Splice_Site	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:234546024G>A	uc002vur.2	+	1	901	c.855_splice	c.e1+1	p.M285_splice	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Splice_Site_p.M285_splice	NM_019075	NP_061948	Q9HAW8	UD110_HUMAN	UDP glycosyltransferase 1 family, polypeptide						flavone metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity|protein kinase C binding			ovary(2)|skin(1)	3		Breast(86;0.000766)|all_lung(227;0.00271)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0334)|Lung NSC(271;0.0461)|Lung SC(224;0.128)		Epithelial(121;1.96e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000468)|Lung(119;0.00381)|LUSC - Lung squamous cell carcinoma(224;0.008)		ATTGCCTATGGTAAGTCACCT	0.403													38	59					0	0	0.007835	0	0
UGT1A5	54579	broad.mit.edu	37	2	234622403	234622403	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:234622403C>T	uc002vuw.2	+	1	766	c.766C>T	c.(766-768)CTG>TTG	p.L256L	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Intron|UGT1A9_uc002vus.2_Intron|UGT1A7_uc010zmx.1_Intron|UGT1A7_uc002vut.2_Intron|UGT1A6_uc002vuu.2_Intron|UGT1A6_uc010zmy.1_Intron|UGT1A6_uc002vuv.3_Intron|UGT1A5_uc010zmz.1_Silent_p.L256L	NM_019078	NP_061951	P35504	UD15_HUMAN	UDP glycosyltransferase 1 family, polypeptide A5	256					xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(1)	1		Breast(86;0.000765)|all_lung(227;0.00267)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0328)|Lung NSC(271;0.0457)|Lung SC(224;0.128)		Epithelial(121;4.51e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000523)|Lung(119;0.00271)|LUSC - Lung squamous cell carcinoma(224;0.00645)		ATCTGTGTGGCTGTTCCGAGG	0.527													42	74					0	0	0.010771	0	0
COL6A3	1293	broad.mit.edu	37	2	238242165	238242165	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:238242165G>A	uc002vwl.2	-	42	9541	c.9256C>T	c.(9256-9258)CCA>TCA	p.P3086S	COL6A3_uc002vwo.2_Missense_Mutation_p.P2880S|COL6A3_uc010znj.1_Missense_Mutation_p.P2479S|COL6A3_uc002vwj.2_Missense_Mutation_p.P467S	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	3086	Nonhelical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		GACCTTGCTGGCTGTGGAGGT	0.428													17	29					0	0	0.012319	0	0
COL6A3	1293	broad.mit.edu	37	2	238303252	238303252	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:238303252C>T	uc002vwl.2	-	3	972	c.687G>A	c.(685-687)ACG>ACA	p.T229T	COL6A3_uc002vwo.2_Intron|COL6A3_uc010znj.1_Intron|COL6A3_uc002vwq.2_Intron|COL6A3_uc002vwr.2_Intron|COL6A3_uc010znk.1_Silent_p.T229T	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	229	Nonhelical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		TAAGGGTTTCCGTGTCCCCAG	0.488													13	24					0	0	0.003163	0	0
ESPNL	339768	broad.mit.edu	37	2	239038790	239038790	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:239038790C>T	uc002vxq.3	+	9	1545	c.1435C>T	c.(1435-1437)CCC>TCC	p.P479S	ESPNL_uc010fyw.2_Missense_Mutation_p.P175S	NM_194312	NP_919288	Q6ZVH7	ESPNL_HUMAN	espin-like	479										pancreas(1)	1		Breast(86;7.61e-05)|Renal(207;0.00183)|Ovarian(221;0.0481)|all_hematologic(139;0.158)|all_lung(227;0.198)|Melanoma(123;0.203)|Hepatocellular(293;0.244)		Epithelial(121;4.71e-24)|OV - Ovarian serous cystadenocarcinoma(60;3.02e-12)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;5.63e-08)|BRCA - Breast invasive adenocarcinoma(100;0.000109)|Lung(119;0.0108)|LUSC - Lung squamous cell carcinoma(224;0.0253)		GAGCTCAGGCCCCACGGAGCA	0.632													4	14					0	0	0.000602	0	0
PASK	23178	broad.mit.edu	37	2	242078169	242078169	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:242078169G>A	uc002wao.1	-	5	733	c.641C>T	c.(640-642)TCT>TTT	p.S214F	PASK_uc010zol.1_Missense_Mutation_p.S28F|PASK_uc010zom.1_Missense_Mutation_p.S214F|PASK_uc010fzl.1_Missense_Mutation_p.S214F|PASK_uc010zon.1_5'UTR|PASK_uc002waq.2_Missense_Mutation_p.S214F	NM_015148	NP_055963	Q96RG2	PASK_HUMAN	PAS domain containing serine/threonine kinase	214					regulation of transcription, DNA-dependent	Golgi apparatus	ATP binding|identical protein binding|protein serine/threonine kinase activity|signal transducer activity			ovary(4)|lung(1)|skin(1)	6		all_cancers(19;4.46e-39)|all_epithelial(40;1.34e-17)|Breast(86;1.53e-05)|Renal(207;0.00179)|all_lung(227;0.00481)|Lung NSC(271;0.017)|Ovarian(221;0.0228)|Esophageal squamous(248;0.129)|all_hematologic(139;0.158)|Melanoma(123;0.16)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;1.34e-31)|all cancers(36;1e-28)|OV - Ovarian serous cystadenocarcinoma(60;3.53e-14)|Kidney(56;4.31e-09)|KIRC - Kidney renal clear cell carcinoma(57;4.35e-08)|BRCA - Breast invasive adenocarcinoma(100;5.64e-06)|Lung(119;0.000596)|LUSC - Lung squamous cell carcinoma(224;0.00481)|Colorectal(34;0.014)|COAD - Colon adenocarcinoma(134;0.0968)		CATCCACACAGACACTGGAAT	0.582													20	27					0	0	0.008871	0	0
CSNK2A1	1457	broad.mit.edu	37	20	468211	468211	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:468211C>T	uc002wdw.1	-	12	1226	c.833G>A	c.(832-834)CGA>CAA	p.R278Q	CSNK2A1_uc002wdx.1_Missense_Mutation_p.R278Q|CSNK2A1_uc002wdy.1_Missense_Mutation_p.R142Q	NM_177559	NP_808227	P68400	CSK21_HUMAN	casein kinase II alpha 1 subunit isoform a	278	Protein kinase.				axon guidance|Wnt receptor signaling pathway	cytosol|NuRD complex|plasma membrane|Sin3 complex	ATP binding|protein N-terminus binding|protein serine/threonine kinase activity			ovary(1)	1		Breast(17;0.231)	OV - Ovarian serous cystadenocarcinoma(29;0.0969)			CCATCGCTTTCGAGAGTGTCT	0.507													9	56					0	0	0.008291	0	0
ANGPT4	51378	broad.mit.edu	37	20	896618	896618	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:896618C>T	uc002wei.2	-	1	343	c.240G>A	c.(238-240)GGG>GGA	p.G80G	ANGPT4_uc010zpn.1_Silent_p.G74G	NM_015985	NP_057069	Q9Y264	ANGP4_HUMAN	angiopoietin 4 precursor	80					anti-apoptosis|blood coagulation|cellular response to hypoxia|leukocyte migration|negative regulation of angiogenesis|negative regulation of blood vessel endothelial cell migration|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of peptidyl-tyrosine phosphorylation|signal transduction	extracellular space	receptor tyrosine kinase binding|transmembrane receptor protein tyrosine kinase activator activity			ovary(2)	2						TGGGCAACTTCCCCAGGTGCA	0.622													29	67					0	0	0.007291	0	0
SIRPB2	284759	broad.mit.edu	37	20	1460520	1460520	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:1460520G>A	uc002wfg.2	-	2	504	c.276C>T	c.(274-276)TTC>TTT	p.F92F	SIRPB2_uc002wfh.3_Intron|SIRPB2_uc010zpr.1_Intron	NM_001122962	NP_001116434	Q5JXA9	SIRB2_HUMAN	signal-regulatory protein beta 2 isoform 1	92	Ig-like V-type 1.|Extracellular (Potential).					integral to membrane					0						TTACCCCAGGGAAGGAGCCAC	0.473													40	35					0	0	0.007835	0	0
SIRPB1	10326	broad.mit.edu	37	20	1552369	1552369	+	Nonsense_Mutation	SNP	G	A	A	rs148690008		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:1552369G>A	uc010gai.2	-	3	847	c.748C>T	c.(748-750)CGA>TGA	p.R250*	SIRPB1_uc002wfk.3_Intron	NM_006065	NP_006056	O00241	SIRB1_HUMAN	signal-regulatory protein beta 1 isoform 1	250	Extracellular (Potential).				cell junction assembly|cell surface receptor linked signaling pathway	integral to plasma membrane	protein binding			ovary(1)	1						CTTCTACCTCGGATGGCCTCA	0.597													6	30					0	0	0.001984	0	0
SIRPG	55423	broad.mit.edu	37	20	1629810	1629810	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:1629810G>A	uc002wfm.1	-	2	383	c.318C>T	c.(316-318)ATC>ATT	p.I106I	SIRPG_uc002wfn.1_Silent_p.I106I|SIRPG_uc002wfo.1_Silent_p.I106I	NM_018556	NP_061026	Q9P1W8	SIRPG_HUMAN	signal-regulatory protein gamma isoform 1	106	Extracellular (Potential).|Ig-like V-type.				blood coagulation|cell adhesion|cell junction assembly|cell-cell signaling|intracellular signal transduction|leukocyte migration|negative regulation of cell proliferation|positive regulation of cell proliferation|positive regulation of cell-cell adhesion|positive regulation of T cell activation	integral to membrane|intracellular|plasma membrane	protein binding			ovary(1)	1						TGATGCTACTGATGCGGATGG	0.478													12	103					0	0	0.001855	0	0
SIRPG	55423	broad.mit.edu	37	20	1629899	1629899	+	Missense_Mutation	SNP	T	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:1629899T>A	uc002wfm.1	-	2	294	c.229A>T	c.(229-231)ATC>TTC	p.I77F	SIRPG_uc002wfn.1_Missense_Mutation_p.I77F|SIRPG_uc002wfo.1_Missense_Mutation_p.I77F	NM_018556	NP_061026	Q9P1W8	SIRPG_HUMAN	signal-regulatory protein gamma isoform 1	77	Extracellular (Potential).|Ig-like V-type.				blood coagulation|cell adhesion|cell junction assembly|cell-cell signaling|intracellular signal transduction|leukocyte migration|negative regulation of cell proliferation|positive regulation of cell proliferation|positive regulation of cell-cell adhesion|positive regulation of T cell activation	integral to membrane|intracellular|plasma membrane	protein binding			ovary(1)	1						TGATTGTAGATTAATTCCCGG	0.512													17	69					0	0	0.004990	0	0
SIRPG	55423	broad.mit.edu	37	20	1630007	1630007	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:1630007G>A	uc002wfm.1	-	2	186	c.121C>T	c.(121-123)CTG>TTG	p.L41L	SIRPG_uc002wfn.1_Silent_p.L41L|SIRPG_uc002wfo.1_Silent_p.L41L	NM_018556	NP_061026	Q9P1W8	SIRPG_HUMAN	signal-regulatory protein gamma isoform 1	41	Extracellular (Potential).|Ig-like V-type.				blood coagulation|cell adhesion|cell junction assembly|cell-cell signaling|intracellular signal transduction|leukocyte migration|negative regulation of cell proliferation|positive regulation of cell proliferation|positive regulation of cell-cell adhesion|positive regulation of T cell activation	integral to membrane|intracellular|plasma membrane	protein binding			ovary(1)	1						GTGACCAACAGGAGCTTCTCA	0.512													13	40					0	0	0.013537	0	0
SIRPA	140885	broad.mit.edu	37	20	1902297	1902297	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:1902297C>T	uc002wfq.2	+	4	1053	c.693C>T	c.(691-693)GCC>GCT	p.A231A	SIRPA_uc010zps.1_Silent_p.A211A|SIRPA_uc002wfr.2_Silent_p.A231A|SIRPA_uc002wfs.2_Silent_p.A231A|SIRPA_uc002wft.2_Silent_p.A231A	NM_001040022	NP_001035111	P78324	SHPS1_HUMAN	signal-regulatory protein alpha precursor	231	Ig-like C1-type 1.|Extracellular (Potential).				blood coagulation|cell adhesion|cell junction assembly|leukocyte migration	integral to membrane|plasma membrane	SH3 domain binding			ovary(1)	1				Colorectal(46;0.018)|READ - Rectum adenocarcinoma(1;0.0556)		GCGAGGTGGCCCACGTCACCT	0.617													4	48					0	0	0.003080	0	0
TGM3	7053	broad.mit.edu	37	20	2312850	2312850	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:2312850G>A	uc002wfx.3	+	10	1633	c.1536G>A	c.(1534-1536)ACG>ACA	p.T512T		NM_003245	NP_003236	Q08188	TGM3_HUMAN	transglutaminase 3 precursor	512					cell envelope organization|hair follicle morphogenesis|keratinization|peptide cross-linking|protein tetramerization	cytoplasm|extrinsic to internal side of plasma membrane	acyltransferase activity|calcium ion binding|GDP binding|GTP binding|GTPase activity|magnesium ion binding|protein-glutamine gamma-glutamyltransferase activity			large_intestine(4)|ovary(3)|breast(1)|skin(1)	9					L-Glutamine(DB00130)	GCAGGGATACGAAGACAGTGA	0.537													9	12					0	0	0.006214	0	0
TGM3	7053	broad.mit.edu	37	20	2321170	2321170	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:2321170C>T	uc002wfx.3	+	13	2122	c.2025C>T	c.(2023-2025)TTC>TTT	p.F675F		NM_003245	NP_003236	Q08188	TGM3_HUMAN	transglutaminase 3 precursor	675					cell envelope organization|hair follicle morphogenesis|keratinization|peptide cross-linking|protein tetramerization	cytoplasm|extrinsic to internal side of plasma membrane	acyltransferase activity|calcium ion binding|GDP binding|GTP binding|GTPase activity|magnesium ion binding|protein-glutamine gamma-glutamyltransferase activity			large_intestine(4)|ovary(3)|breast(1)|skin(1)	9					L-Glutamine(DB00130)	TCGCCGACTTCTCCTGCAACA	0.602													23	52					0	0	0.014323	0	0
TGM6	343641	broad.mit.edu	37	20	2381057	2381057	+	Missense_Mutation	SNP	G	A	A	rs148376598	byFrequency	TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:2381057G>A	uc002wfy.1	+	7	1017	c.956G>A	c.(955-957)CGG>CAG	p.R319Q	TGM6_uc010gal.1_Missense_Mutation_p.R319Q	NM_198994	NP_945345	O95932	TGM3L_HUMAN	transglutaminase 6	319					cell death|peptide cross-linking		acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(3)|skin(1)	4					L-Glutamine(DB00130)	TCCTTCGGGCGGACCCTGGAG	0.612													26	34					0	0	0.006320	0	0
C20orf141	128653	broad.mit.edu	37	20	2795880	2795880	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:2795880C>T	uc010gat.2	+	2	133	c.50C>T	c.(49-51)CCA>CTA	p.P17L	C20orf141_uc002wgv.1_Missense_Mutation_p.P17L|C20orf141_uc002wgw.2_Missense_Mutation_p.P17L|uc002wgx.1_5'Flank|uc002wgy.1_5'Flank	NM_080739	NP_542777	Q9NUB4	CT141_HUMAN	hypothetical protein LOC128653	17						integral to membrane					0						GATCCGATCCCAGTTCCTCCA	0.612													33	71					0	0	0.013726	0	0
FAM113A	64773	broad.mit.edu	37	20	2816919	2816920	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:2816919_2816920GG>AA	uc002wgz.1	-	7	1379_1380	c.882_883CC>TT	c.(880-885)TTCCAG>TTTTAG	p.Q295*	FAM113A_uc002whb.1_Nonsense_Mutation_p.Q146*|FAM113A_uc002wha.1_Nonsense_Mutation_p.Q146*|FAM113A_uc010zqa.1_Nonsense_Mutation_p.Q142*|FAM113A_uc002whc.1_Nonsense_Mutation_p.Q244*	NM_022760	NP_073597	Q9H1Q7	F113A_HUMAN	hypothetical protein LOC64773	295							hydrolase activity|protein binding			ovary(2)	2						TGGCTTCCCTGGAATGGATGAT	0.411													29	69					0	0	0.004672	0	0
SLC4A11	83959	broad.mit.edu	37	20	3210170	3210170	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:3210170C>T	uc002wig.2	-	13	1838	c.1790G>A	c.(1789-1791)AGC>AAC	p.S597N	SLC4A11_uc010zqe.1_Missense_Mutation_p.S624N|SLC4A11_uc002wih.2_RNA|SLC4A11_uc010zqf.1_Missense_Mutation_p.S581N	NM_032034	NP_114423	Q8NBS3	S4A11_HUMAN	solute carrier family 4 member 11	597	Membrane (bicarbonate transporter).|Cytoplasmic (Potential).				cellular cation homeostasis|fluid transport|phosphoenolpyruvate-dependent sugar phosphotransferase system	basolateral plasma membrane|integral to membrane	bicarbonate transmembrane transporter activity|borate transmembrane transporter activity|hydrogen ion channel activity|inorganic anion exchanger activity|sodium channel activity|sugar:hydrogen symporter activity			ovary(1)	1						AGCCCCTCACCTCTTCTTGAA	0.657													12	28					0	0	0.003163	0	0
ATRN	8455	broad.mit.edu	37	20	3577041	3577041	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:3577041G>A	uc002wim.2	+	21	3524	c.3434G>A	c.(3433-3435)CGA>CAA	p.R1145Q	ATRN_uc002wil.2_Missense_Mutation_p.R1145Q	NM_139321	NP_647537	O75882	ATRN_HUMAN	attractin isoform 1	1145	Extracellular (Potential).|Laminin EGF-like 2.				inflammatory response	extracellular space|integral to plasma membrane	receptor activity|sugar binding			ovary(1)|breast(1)	2						GTAGAAAATCGATACCAAGGA	0.318													21	38					0	0	0.003330	0	0
ADAM33	80332	broad.mit.edu	37	20	3655221	3655221	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:3655221C>T	uc002wit.2	-	6	617	c.530G>A	c.(529-531)GGA>GAA	p.G177E	ADAM33_uc002wir.1_Missense_Mutation_p.G177E|ADAM33_uc002wis.2_5'Flank|ADAM33_uc002wiu.2_Missense_Mutation_p.G177E|ADAM33_uc002wiw.1_Intron|ADAM33_uc010gba.1_Intron|ADAM33_uc010gbb.1_Intron|ADAM33_uc002wix.1_Intron|ADAM33_uc010zqg.1_Missense_Mutation_p.G189E|ADAM33_uc010zqh.1_Missense_Mutation_p.G177E	NM_025220	NP_079496	Q9BZ11	ADA33_HUMAN	ADAM metallopeptidase domain 33 isoform alpha	177	Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			large_intestine(2)|ovary(1)|skin(1)	4						GCCACAGGTTCCTTTCCAGGT	0.607													23	76					0	0	0.004656	0	0
SIGLEC1	6614	broad.mit.edu	37	20	3669801	3669801	+	Splice_Site	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:3669801C>T	uc002wja.2	-	20	5070	c.5070_splice	c.e20+1	p.Q1690_splice	SIGLEC1_uc002wjb.1_3'UTR|SIGLEC1_uc002wiz.3_Intron	NM_023068	NP_075556	Q9BZZ2	SN_HUMAN	sialoadhesin precursor						cell-cell adhesion|cell-matrix adhesion|endocytosis|inflammatory response	extracellular region|integral to membrane|plasma membrane	sugar binding			pancreas(4)|ovary(2)|skin(2)|breast(1)|central_nervous_system(1)	10						TGAATGGATACCTGCGTGGTC	0.532													41	63					0	0	0.010771	0	0
PANK2	80025	broad.mit.edu	37	20	3869920	3869920	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:3869920C>T	uc002wkc.2	+	1	179	c.173C>T	c.(172-174)CCT>CTT	p.P58L	uc002wjz.1_5'Flank|uc002wka.1_5'Flank|PANK2_uc002wkb.2_Intron|PANK2_uc010gbd.1_RNA|PANK2_uc002wkd.2_RNA|PANK2_uc002wke.2_5'Flank|PANK2_uc002wkf.2_5'Flank	NM_153638	NP_705902	Q9BZ23	PANK2_HUMAN	pantothenate kinase 2 isoform 1 preproprotein	58					cell death|coenzyme A biosynthetic process|pantothenate metabolic process	mitochondrial intermembrane space|nucleus	ATP binding|pantothenate kinase activity|protein binding				0						GTCAATCCTCCTCGAGTTAGG	0.682													6	6					0	0	0.001168	0	0
RNF24	11237	broad.mit.edu	37	20	3915673	3915673	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:3915673C>T	uc002wkh.2	-	5	546	c.276G>A	c.(274-276)GGG>GGA	p.G92G	RNF24_uc002wki.2_Silent_p.G113G|RNF24_uc002wkj.2_Silent_p.G92G	NM_007219	NP_009150	Q9Y225	RNF24_HUMAN	ring finger protein 24 isoform 1	92	RING-type.					Golgi membrane|integral to membrane	zinc ion binding				0						ATGGGCAAATCCCCAACTCAT	0.463													7	45					0	0	0.004482	0	0
SMOX	54498	broad.mit.edu	37	20	4162483	4162483	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:4162483G>A	uc002wkm.1	+	4	670	c.469G>A	c.(469-471)GAT>AAT	p.D157N	SMOX_uc002wkk.1_Missense_Mutation_p.D157N|SMOX_uc002wkl.1_Missense_Mutation_p.D157N|SMOX_uc002wkn.1_Intron|SMOX_uc002wkp.2_Missense_Mutation_p.D157N|SMOX_uc010zqo.1_Missense_Mutation_p.D134N|SMOX_uc002wko.1_Missense_Mutation_p.D157N	NM_175839	NP_787033	Q9NWM0	SMOX_HUMAN	spermine oxidase isoform 1	157					polyamine biosynthetic process|xenobiotic metabolic process	cytosol|nucleus	polyamine oxidase activity			breast(1)	1					Spermine(DB00127)	CTTCCGGCACGATAAACCAGT	0.532													6	59					0	0	0.001984	0	0
PRNT	149830	broad.mit.edu	37	20	4713232	4713232	+	RNA	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:4713232G>A	uc002wlb.2	-	2		c.792C>T			PRNT_uc010zqp.1_RNA|PRNT_uc010zqq.1_RNA	NR_024268				Homo sapiens mRNA for putative M8 protein, isoform 2.												0						ctagagaagggaagtctgaaa	0													10	14					0	0	0.010729	0	0
RASSF2	9770	broad.mit.edu	37	20	4768320	4768320	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:4768320A>G	uc002wld.2	-	9	826	c.772T>C	c.(772-774)TTC>CTC	p.F258L	RASSF2_uc002wlc.2_RNA|RASSF2_uc002wle.2_RNA|RASSF2_uc002wlf.2_Missense_Mutation_p.F258L|RASSF2_uc010gbh.2_5'Flank	NM_170774	NP_739580	P50749	RASF2_HUMAN	Ras association domain family 2	258	Ras-associating.				cell cycle|signal transduction	nucleus	protein binding			ovary(3)|lung(2)|large_intestine(1)	6						TCCATTAGGAACACTTTGGAG	0.557													16	27					0	0	0.004007	0	0
CHGB	1114	broad.mit.edu	37	20	5903950	5903950	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:5903950G>A	uc002wmg.2	+	4	1466	c.1160G>A	c.(1159-1161)AGA>AAA	p.R387K	CHGB_uc010zqz.1_Missense_Mutation_p.R70K	NM_001819	NP_001810	P05060	SCG1_HUMAN	chromogranin B precursor	387						extracellular region	hormone activity			breast(3)|skin(2)|ovary(1)	6						GAGGACAAGAGAAACTACCCC	0.537													21	55					0	0	0.014323	0	0
FERMT1	55612	broad.mit.edu	37	20	6065781	6065781	+	Missense_Mutation	SNP	C	T	T	rs151300234		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:6065781C>T	uc002wmr.2	-	12	2314	c.1525G>A	c.(1525-1527)GAA>AAA	p.E509K	FERMT1_uc002wmq.2_Missense_Mutation_p.E62K|FERMT1_uc010gbt.2_Missense_Mutation_p.E252K	NM_017671	NP_060141	Q9BQL6	FERM1_HUMAN	kindlin-1	509	FERM.				cell adhesion|establishment of epithelial cell polarity|keratinocyte migration|keratinocyte proliferation	cytosol|focal adhesion|ruffle membrane	binding			ovary(1)|pancreas(1)|skin(1)	3						TCCATGTTTTCGAGACTGGAA	0.448													27	55					0	0	0.012213	0	0
FERMT1	55612	broad.mit.edu	37	20	6078265	6078265	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:6078265C>T	uc002wmr.2	-	7	1652	c.863G>A	c.(862-864)CGA>CAA	p.R288Q	FERMT1_uc010gbt.2_Missense_Mutation_p.R31Q|FERMT1_uc002wms.2_Missense_Mutation_p.R288Q|FERMT1_uc002wmt.2_Missense_Mutation_p.R31Q	NM_017671	NP_060141	Q9BQL6	FERM1_HUMAN	kindlin-1	288	FERM.				cell adhesion|establishment of epithelial cell polarity|keratinocyte migration|keratinocyte proliferation	cytosol|focal adhesion|ruffle membrane	binding			ovary(1)|pancreas(1)|skin(1)	3						TTGGTTTATTCGGACAGCATC	0.403													8	59					0	0	0.003080	0	0
HAO1	54363	broad.mit.edu	37	20	7895041	7895041	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:7895041C>T	uc002wmw.1	-	3	339	c.315G>A	c.(313-315)ATG>ATA	p.M105I	HAO1_uc010gbu.2_Missense_Mutation_p.M105I	NM_017545	NP_060015	Q9UJM8	HAOX1_HUMAN	hydroxyacid oxidase 1	105	FMN hydroxy acid dehydrogenase.				cellular nitrogen compound metabolic process|fatty acid alpha-oxidation|glycolate catabolic process|glyoxylate metabolic process	peroxisomal matrix	FMN binding|glycolate oxidase activity|glyoxylate oxidase activity			ovary(3)	3						AACTCAACATCATGCCCGTTC	0.517													6	22					0	0	0.001984	0	0
PLCB4	5332	broad.mit.edu	37	20	9317805	9317805	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:9317805C>T	uc002wnf.2	+	4	253	c.117C>T	c.(115-117)TTC>TTT	p.F39F	PLCB4_uc010gbw.1_Silent_p.F39F|PLCB4_uc010gbx.2_Silent_p.F39F|PLCB4_uc002wne.2_Silent_p.F39F	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	39					intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						ACTGCCTCTTCAAAGTGGATG	0.378													7	52					0	0	0.010729	0	0
PLCB4	5332	broad.mit.edu	37	20	9318655	9318655	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:9318655G>A	uc002wnf.2	+	5	302	c.166G>A	c.(166-168)GAA>AAA	p.E56K	PLCB4_uc010gbw.1_Missense_Mutation_p.E56K|PLCB4_uc010gbx.2_Missense_Mutation_p.E56K|PLCB4_uc002wne.2_Missense_Mutation_p.E56K	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	56					intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						CTCTCTTCAGGAAGGACAGGT	0.428													17	19					0	0	0.004007	0	0
PLCB4	5332	broad.mit.edu	37	20	9416235	9416235	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:9416235G>A	uc002wnf.2	+	27	2653	c.2517G>A	c.(2515-2517)AAG>AAA	p.K839K	PLCB4_uc010gbw.1_Silent_p.K839K|PLCB4_uc010gbx.2_Silent_p.K851K|PLCB4_uc002wne.2_Silent_p.K839K|PLCB4_uc002wnh.2_Silent_p.K686K	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	839					intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						CAGATCCAAAGAAATTTCTCT	0.363													22	47					0	0	0.012319	0	0
PCSK2	5126	broad.mit.edu	37	20	17434578	17434578	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:17434578G>A	uc002wpm.2	+	9	1397	c.1077G>A	c.(1075-1077)AGG>AGA	p.R359R	PCSK2_uc002wpl.2_Silent_p.R340R|PCSK2_uc010zrm.1_Silent_p.R324R	NM_002594	NP_002585	P16519	NEC2_HUMAN	proprotein convertase subtilisin/kexin type 2	359	Catalytic.				enkephalin processing|insulin processing|islet amyloid polypeptide processing	extracellular space|membrane|soluble fraction|transport vesicle	serine-type endopeptidase activity			ovary(3)|central_nervous_system(2)|large_intestine(1)|pancreas(1)	7					Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	GCAACGGGAGGAAAAGGAACC	0.592													8	21					0	0	0.004482	0	0
BANF2	140836	broad.mit.edu	37	20	17716333	17716333	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:17716333C>T	uc002wpz.2	+	4	424	c.150C>T	c.(148-150)TTC>TTT	p.F50F	BANF2_uc010zrs.1_Silent_p.F57F|BANF2_uc002wqa.2_Silent_p.F50F	NM_178477	NP_848572	Q9H503	BAFL_HUMAN	barrier to autointegration factor 2 isoform 1	50						cytoplasm|nucleus	DNA binding			skin(1)	1						TGGGACAATTCCTTCTGATGC	0.542													17	67					0	0	0.008871	0	0
OVOL2	58495	broad.mit.edu	37	20	18005591	18005591	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:18005591G>A	uc002wqi.1	-	4	760	c.517C>T	c.(517-519)CGT>TGT	p.R173C		NM_021220	NP_067043	Q9BRP0	OVOL2_HUMAN	zinc finger protein 339	173					negative regulation of keratinocyte differentiation|negative regulation of Notch signaling pathway|negative regulation of transcription by competitive promoter binding|regulation of cell cycle|regulation of keratinocyte proliferation|transcription, DNA-dependent	nucleus	DNA binding|transcription regulatory region DNA binding|zinc ion binding			central_nervous_system(1)	1						TTGTAGGGACGAATGCCTGAA	0.522													12	70					0	0	0.001855	0	0
ZNF133	7692	broad.mit.edu	37	20	18295808	18295808	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:18295808C>T	uc010gcq.2	+	5	618	c.313C>T	c.(313-315)CCC>TCC	p.P105S	ZNF133_uc010zrv.1_Missense_Mutation_p.P108S|ZNF133_uc010zrw.1_Missense_Mutation_p.P42S|ZNF133_uc010gcr.2_Missense_Mutation_p.P105S|ZNF133_uc010zrx.1_Missense_Mutation_p.P10S|ZNF133_uc002wql.3_Missense_Mutation_p.P104S|ZNF133_uc010gcs.2_Missense_Mutation_p.P104S|ZNF133_uc010zry.1_Missense_Mutation_p.P10S|ZNF133_uc002wqm.2_Missense_Mutation_p.P105S	NM_003434	NP_003425	P52736	ZN133_HUMAN	zinc finger protein 133	105						nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|pancreas(1)	2						TAATCATCCCCCCTGGATCTT	0.572													16	64					0	0	0.004990	0	0
SLC24A3	57419	broad.mit.edu	37	20	19665909	19665909	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:19665909G>A	uc002wrl.2	+	12	1425	c.1228G>A	c.(1228-1230)GAA>AAA	p.E410K		NM_020689	NP_065740	Q9HC58	NCKX3_HUMAN	solute carrier family 24	410	Cytoplasmic (Potential).					integral to membrane|plasma membrane	calcium, potassium:sodium antiporter activity|symporter activity			ovary(1)	1						GGCTGGCAACGAAACAgagaa	0.398													17	32					0	0	0.004007	0	0
RIN2	54453	broad.mit.edu	37	20	19956095	19956095	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:19956095C>T	uc002wro.1	+	7	1462	c.1426C>T	c.(1426-1428)CCC>TCC	p.P476S	RIN2_uc010gcu.1_Intron|RIN2_uc010gcv.1_Missense_Mutation_p.P270S	NM_018993	NP_061866	Q8WYP3	RIN2_HUMAN	Ras and Rab interactor 2	476					endocytosis|small GTPase mediated signal transduction	cytoplasm	GTPase activator activity|Rab guanyl-nucleotide exchange factor activity			lung(4)|ovary(1)	5						CATGGCGCCCCCCATCAAGTC	0.587													10	37					0	0	0.006214	0	0
C20orf26	26074	broad.mit.edu	37	20	20144724	20144724	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:20144724G>A	uc002wru.2	+	11	1133	c.1057G>A	c.(1057-1059)GGA>AGA	p.G353R	C20orf26_uc010gcw.1_Missense_Mutation_p.G307R|C20orf26_uc010zse.1_Missense_Mutation_p.G353R|C20orf26_uc010zsf.1_Missense_Mutation_p.G353R	NM_015585	NP_056400	Q8NHU2	CT026_HUMAN	hypothetical protein LOC26074	353										ovary(3)|pancreas(1)	4				READ - Rectum adenocarcinoma(2;0.171)		CATCTCCACTGGATATGCACA	0.532													21	47					0	0	0.004656	0	0
RALGAPA2	57186	broad.mit.edu	37	20	20571850	20571850	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:20571850G>A	uc002wrz.2	-	17	2455	c.2312C>T	c.(2311-2313)CCC>CTC	p.P771L	RALGAPA2_uc010gcx.2_Missense_Mutation_p.P475L|RALGAPA2_uc010zsg.1_Missense_Mutation_p.P219L	NM_020343	NP_065076	Q2PPJ7	RGPA2_HUMAN	akt substrate AS250	771					activation of Ral GTPase activity	cytosol|nucleus	protein heterodimerization activity|Ral GTPase activator activity			ovary(1)	1						CAGCGGCTCGGGGATGTCGGA	0.502													13	60					0	0	0.007413	0	0
NKX2-2	4821	broad.mit.edu	37	20	21494126	21494126	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:21494126A>G	uc002wsi.2	-	1	539	c.182T>C	c.(181-183)CTG>CCG	p.L61P		NM_002509	NP_002500	O95096	NKX22_HUMAN	NK2 transcription factor related, locus 2	61					brain development|positive regulation of sequence-specific DNA binding transcription factor activity	nucleus	chromatin binding|core promoter proximal region DNA binding|transcription coactivator activity			pancreas(1)|skin(1)	2						GGGGTTCTTCAGGGGCAGGCT	0.677													10	21					0	0	0.006214	0	0
CD93	22918	broad.mit.edu	37	20	23064991	23064991	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:23064991C>T	uc002wsv.2	-	1	1987	c.1839G>A	c.(1837-1839)AGG>AGA	p.R613R		NM_012072	NP_036204	Q9NPY3	C1QR1_HUMAN	CD93 antigen precursor	613	Cytoplasmic (Potential).				cell-cell adhesion|interspecies interaction between organisms|macrophage activation|phagocytosis	plasma membrane	calcium ion binding|complement component C1q binding|receptor activity|sugar binding			large_intestine(2)	2	Colorectal(13;0.0352)|Lung NSC(19;0.0542)|all_lung(19;0.118)					TCTTCTCCTCCCTCTTCGCTC	0.567													31	102					0	0	0.012213	0	0
CD93	22918	broad.mit.edu	37	20	23065742	23065742	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:23065742C>T	uc002wsv.2	-	1	1236	c.1088G>A	c.(1087-1089)GGG>GAG	p.G363E		NM_012072	NP_036204	Q9NPY3	C1QR1_HUMAN	CD93 antigen precursor	363	Extracellular (Potential).|EGF-like 3; calcium-binding (Potential).				cell-cell adhesion|interspecies interaction between organisms|macrophage activation|phagocytosis	plasma membrane	calcium ion binding|complement component C1q binding|receptor activity|sugar binding			large_intestine(2)	2	Colorectal(13;0.0352)|Lung NSC(19;0.0542)|all_lung(19;0.118)					GCGGAAGCCCCCAGGGGTGTT	0.642													10	19					0	0	0.008291	0	0
CST11	140880	broad.mit.edu	37	20	23432486	23432486	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:23432486C>T	uc002wtf.1	-	2	334	c.300G>A	c.(298-300)ACG>ACA	p.T100T	CST11_uc002wtg.1_Intron	NM_130794	NP_570612	Q9H112	CST11_HUMAN	cystatin 11 isoform 1 precursor	100					defense response to bacterium	cytoplasm|nucleus	cysteine-type endopeptidase inhibitor activity				0	Colorectal(13;0.0431)|Lung NSC(19;0.235)					GGACACAGTTCGTGGTCTCTG	0.522													14	50					0	0	0.003163	0	0
CST11	140880	broad.mit.edu	37	20	23433381	23433381	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:23433381G>A	uc002wtf.1	-	1	102	c.68C>T	c.(67-69)CCC>CTC	p.P23L	CST11_uc002wtg.1_Missense_Mutation_p.P23L	NM_130794	NP_570612	Q9H112	CST11_HUMAN	cystatin 11 isoform 1 precursor	23					defense response to bacterium	cytoplasm|nucleus	cysteine-type endopeptidase inhibitor activity				0	Colorectal(13;0.0431)|Lung NSC(19;0.235)					TGCTTGGTAGGGGAGGGCCAT	0.512													17	29					0	0	0.004007	0	0
ACSS1	84532	broad.mit.edu	37	20	24994251	24994251	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:24994251G>A	uc002wub.2	-	10	2378	c.1500C>T	c.(1498-1500)TCC>TCT	p.S500S	ACSS1_uc002wuc.2_Silent_p.S498S|ACSS1_uc010gdc.2_Silent_p.S295S|ACSS1_uc002wud.1_RNA|ACSS1_uc002wua.2_Silent_p.S417S	NM_032501	NP_115890	Q9NUB1	ACS2L_HUMAN	acyl-CoA synthetase short-chain family member 1	500					acetyl-CoA biosynthetic process|ethanol oxidation|xenobiotic metabolic process	mitochondrial matrix	acetate-CoA ligase activity|AMP binding|ATP binding|protein binding			ovary(1)|skin(1)	2					Adenosine monophosphate(DB00131)|Adenosine triphosphate(DB00171)	GCCAGGCCTGGGAGATGCACA	0.642													4	21					0	0	0.000602	0	0
NINL	22981	broad.mit.edu	37	20	25460820	25460821	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:25460820_25460821GG>AA	uc002wux.1	-	15	1967_1968	c.1893_1894CC>TT	c.(1891-1896)GACCTC>GATTTC	p.L632F	NINL_uc010gdn.1_Missense_Mutation_p.L632F|NINL_uc010gdo.1_Missense_Mutation_p.L415F	NM_025176	NP_079452	Q9Y2I6	NINL_HUMAN	ninein-like	632	Potential.				G2/M transition of mitotic cell cycle	cytosol|microtubule|microtubule organizing center	calcium ion binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5						TGGGTCCTGAGGTCTTGGTAAT	0.55													11	43					0	0	0.004672	0	0
DEFB115	245929	broad.mit.edu	37	20	29845491	29845491	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:29845491C>T	uc002wvp.1	+	1	25	c.25C>T	c.(25-27)CTC>TTC	p.L9F		NM_001037730	NP_001032819	Q30KQ5	DB115_HUMAN	beta-defensin 115 precursor	9					defense response to bacterium	extracellular region				ovary(1)	1			Colorectal(19;0.00445)|COAD - Colon adenocarcinoma(19;0.0347)			TTTCTCACCCCTCTCAGGAGA	0.502													13	34					0	0	0.001855	0	0
REM1	28954	broad.mit.edu	37	20	30064427	30064427	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:30064427C>T	uc002wwa.2	+	2	463	c.179C>T	c.(178-180)TCA>TTA	p.S60L		NM_014012	NP_054731	O75628	REM1_HUMAN	RAS-like GTP-binding protein REM	60					small GTPase mediated signal transduction	membrane	calmodulin binding|GTP binding|GTPase activity			lung(2)|pancreas(2)	4	all_cancers(5;0.000119)|Lung NSC(7;1.32e-05)|all_lung(7;2.14e-05)|all_hematologic(12;0.158)|Ovarian(7;0.198)		Colorectal(19;0.00254)|COAD - Colon adenocarcinoma(19;0.0347)			CAGAAACCTTCACCTGCCCCA	0.612													16	35					0	0	0.004007	0	0
MYLK2	85366	broad.mit.edu	37	20	30408243	30408243	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:30408243C>T	uc002wwq.2	+	3	469	c.367C>T	c.(367-369)CCT>TCT	p.P123S		NM_033118	NP_149109	Q9H1R3	MYLK2_HUMAN	skeletal myosin light chain kinase	123					cardiac muscle tissue morphogenesis|regulation of muscle filament sliding		ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity|myosin light chain kinase activity			lung(2)|skin(2)|ovary(1)|central_nervous_system(1)	6			Colorectal(19;0.00306)|COAD - Colon adenocarcinoma(19;0.0347)			CAGCCAGGATCCTGGAAAGCC	0.657													14	24					0	0	0.002450	0	0
MYLK2	85366	broad.mit.edu	37	20	30419644	30419644	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:30419644C>T	uc002wwq.2	+	11	1665	c.1563C>T	c.(1561-1563)ATC>ATT	p.I521I	MYLK2_uc002wws.2_Silent_p.I138I|MYLK2_uc010gdw.1_RNA	NM_033118	NP_149109	Q9H1R3	MYLK2_HUMAN	skeletal myosin light chain kinase	521	Protein kinase.				cardiac muscle tissue morphogenesis|regulation of muscle filament sliding		ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity|myosin light chain kinase activity			lung(2)|skin(2)|ovary(1)|central_nervous_system(1)	6			Colorectal(19;0.00306)|COAD - Colon adenocarcinoma(19;0.0347)			CCAACCTCATCGTCAAGGACC	0.532													21	33					0	0	0.014323	0	0
TTLL9	164395	broad.mit.edu	37	20	30496439	30496439	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:30496439G>A	uc010gdx.1	+	5	505	c.252G>A	c.(250-252)CGG>CGA	p.R84R	TTLL9_uc002wwy.1_RNA|TTLL9_uc002wwz.1_RNA|TTLL9_uc002wxa.1_RNA|TTLL9_uc002wxb.1_RNA|TTLL9_uc010zto.1_RNA|TTLL9_uc002wxc.2_Intron|TTLL9_uc010ztp.1_RNA|TTLL9_uc010ztq.1_5'Flank	NM_001008409	NP_001008409	Q3SXZ7	TTLL9_HUMAN	tubulin tyrosine ligase-like family, member 9	84	TTL.				protein modification process	cilium|microtubule|microtubule basal body	ATP binding|tubulin-tyrosine ligase activity			ovary(2)	2			Colorectal(19;0.00306)|COAD - Colon adenocarcinoma(19;0.0347)			GCTGGCTCCGGGAGAACTTCG	0.602													5	25					0	0	0.001168	0	0
XKR7	343702	broad.mit.edu	37	20	30584564	30584564	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:30584564G>A	uc002wxe.2	+	3	1218	c.1044G>A	c.(1042-1044)ACG>ACA	p.T348T		NM_001011718	NP_001011718	Q5GH72	XKR7_HUMAN	XK, Kell blood group complex subunit-related	348						integral to membrane				ovary(1)|breast(1)|skin(1)	3			Colorectal(19;0.00306)|COAD - Colon adenocarcinoma(19;0.0347)			AAGGGGAGACGGACTTCTGCA	0.562													9	15					0	0	0.013537	0	0
HCK	3055	broad.mit.edu	37	20	30672286	30672286	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:30672286C>T	uc002wxh.2	+	8	946	c.775C>T	c.(775-777)CGG>TGG	p.R259W	HCK_uc010gdy.2_Missense_Mutation_p.R238W|HCK_uc002wxi.2_Missense_Mutation_p.R237W	NM_002110	NP_002101	P08631	HCK_HUMAN	hemopoietic cell kinase isoform p61HCK	259					interspecies interaction between organisms|mesoderm development|regulation of defense response to virus by virus|viral reproduction	caveola|cytosol	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(4)|ovary(2)|central_nervous_system(2)|pancreas(1)	9			UCEC - Uterine corpus endometrioid carcinoma (5;0.0241)			GGAGATCCCTCGGGAATCCCT	0.602													5	37					0	0	0.001168	0	0
POFUT1	23509	broad.mit.edu	37	20	30804488	30804488	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:30804488C>T	uc002wxp.2	+	4	555	c.506C>T	c.(505-507)TCC>TTC	p.S169F	POFUT1_uc002wxo.2_Missense_Mutation_p.S169F|POFUT1_uc010ztt.1_Missense_Mutation_p.S61F|POFUT1_uc010ztu.1_Intron	NM_015352	NP_056167	Q9H488	OFUT1_HUMAN	protein O-fucosyltransferase 1 isoform 1	169					fucose metabolic process|Notch signaling pathway|O-glycan processing|regulation of transcription, DNA-dependent	endoplasmic reticulum|membrane	peptide-O-fucosyltransferase activity			breast(1)	1			UCEC - Uterine corpus endometrioid carcinoma (5;0.0241)			ACAGGCATTTCCTTCAGTGCT	0.507													30	66					0	0	0.012213	0	0
BPIL1	80341	broad.mit.edu	37	20	31607532	31607532	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:31607532C>T	uc002wyj.2	+	11	1250	c.1056C>T	c.(1054-1056)TTC>TTT	p.F352F		NM_025227	NP_079503	Q8N4F0	BPIL1_HUMAN	bactericidal/permeability-increasing	352						extracellular region	lipid binding			skin(2)|large_intestine(1)|ovary(1)	4						ACTCGGCTTTCCAGTCCCTCT	0.537													10	14					0	0	0.008291	0	0
C20orf70	140683	broad.mit.edu	37	20	31761912	31761912	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:31761912G>A	uc002wyo.1	+	4	401	c.330G>A	c.(328-330)CTG>CTA	p.L110L		NM_080574	NP_542141	Q96DR5	SPLC2_HUMAN	chromosome 20 open reading frame 70 precursor	110						extracellular region	lipid binding			ovary(1)|central_nervous_system(1)	2						CCCTCATCCTGGATGTCAAAG	0.428													19	41					0	0	0.014323	0	0
PLUNC	51297	broad.mit.edu	37	20	31825524	31825524	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:31825524C>T	uc002wyv.2	+	2	77	c.7C>T	c.(7-9)CAA>TAA	p.Q3*	PLUNC_uc002wyt.3_Nonsense_Mutation_p.Q3*|PLUNC_uc002wyu.3_Nonsense_Mutation_p.Q3*	NM_130852	NP_570913	Q9NP55	PLUNC_HUMAN	palate, lung and nasal epithelium associated	3					innate immune response	extracellular region	lipid binding				0						AAAGATGTTTCAAACTGGGGG	0.552													19	27					0	0	0.008871	0	0
C20orf114	92747	broad.mit.edu	37	20	31878781	31878781	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:31878781C>T	uc002wyw.1	+	5	545	c.384C>T	c.(382-384)ATC>ATT	p.I128I	C20orf114_uc010gej.1_Silent_p.I128I	NM_033197	NP_149974	Q8TDL5	LPLC1_HUMAN	LPLUNC1 protein precursor	128						extracellular space	lipid binding			central_nervous_system(2)|skin(2)	4						TCAAGACCATCGTGGAGTTCC	0.607													8	17					0	0	0.003080	0	0
C20orf114	92747	broad.mit.edu	37	20	31890760	31890760	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:31890760C>T	uc002wyw.1	+	11	1181	c.1020C>T	c.(1018-1020)ATC>ATT	p.I340I	C20orf114_uc002wyx.1_RNA	NM_033197	NP_149974	Q8TDL5	LPLC1_HUMAN	LPLUNC1 protein precursor	340						extracellular space	lipid binding			central_nervous_system(2)|skin(2)	4						TCGTGAAGATCCTAACTCAGG	0.458													12	47					0	0	0.001855	0	0
CDK5RAP1	51654	broad.mit.edu	37	20	31967317	31967317	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:31967317C>T	uc010gek.2	-	9	1223	c.1099G>A	c.(1099-1101)GAA>AAA	p.E367K	CDK5RAP1_uc002wyy.2_Missense_Mutation_p.E263K|CDK5RAP1_uc002wyz.2_Missense_Mutation_p.E353K|CDK5RAP1_uc002wza.2_Missense_Mutation_p.E353K|CDK5RAP1_uc010gel.2_Missense_Mutation_p.E262K|CDK5RAP1_uc010gem.2_Intron|CDK5RAP1_uc002wzc.1_Missense_Mutation_p.E353K	NM_016408	NP_057492	Q96SZ6	CK5P1_HUMAN	CDK5 regulatory subunit associated protein 1	367					brain development|negative regulation of cyclin-dependent protein kinase activity|regulation of neuron differentiation|tRNA modification	cytoplasm	4 iron, 4 sulfur cluster binding|metal ion binding|neuronal Cdc2-like kinase binding|transferase activity			ovary(2)|skin(2)|lung(1)	5						ATCCTCATTTCAGGATCTACT	0.463													4	31					0	0	0.009096	0	0
NCOA6	23054	broad.mit.edu	37	20	33330866	33330866	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:33330866G>A	uc002xav.2	-	12	5765	c.3194C>T	c.(3193-3195)TCC>TTC	p.S1065F	NCOA6_uc002xaw.2_Missense_Mutation_p.S1065F	NM_014071	NP_054790	Q14686	NCOA6_HUMAN	nuclear receptor coactivator 6	1065	NCOA1-binding region.				brain development|cellular lipid metabolic process|DNA recombination|DNA repair|DNA replication|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|heart development|myeloid cell differentiation|positive regulation of transcription from RNA polymerase II promoter|response to hormone stimulus|transcription initiation from RNA polymerase II promoter	transcription factor complex	chromatin binding|enzyme binding|estrogen receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|retinoid X receptor binding|thyroid hormone receptor binding			ovary(3)|breast(3)|central_nervous_system(1)	7						CATTCTCTGGGAGTCGGGGTT	0.522													44	109					0	0	0.014410	0	0
MYH7B	57644	broad.mit.edu	37	20	33581170	33581170	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:33581170G>A	uc002xbi.1	+	24	2559	c.2467G>A	c.(2467-2469)GAA>AAA	p.E823K		NM_020884	NP_065935	A7E2Y1	MYH7B_HUMAN	myosin, heavy polypeptide 7B, cardiac muscle,	781						membrane|myosin filament	actin binding|ATP binding|motor activity			ovary(1)|breast(1)	2			BRCA - Breast invasive adenocarcinoma(18;0.00691)			AGGCGTCCTGGAAGAGCTCCG	0.662													10	29					0	0	0.013537	0	0
MMP24	10893	broad.mit.edu	37	20	33834757	33834757	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:33834757C>T	uc002xbu.2	+	2	364	c.361C>T	c.(361-363)CCG>TCG	p.P121S	EDEM2_uc010zuv.1_Intron	NM_006690	NP_006681	Q9Y5R2	MMP24_HUMAN	matrix metalloproteinase 24 preproprotein	121	Extracellular (Potential).				proteolysis	integral to plasma membrane|proteinaceous extracellular matrix	calcium ion binding|enzyme activator activity|metalloendopeptidase activity|zinc ion binding				0			BRCA - Breast invasive adenocarcinoma(18;0.00252)			TTACGGGATCCCGGTCACCGG	0.502													27	46					0	0	0.006320	0	0
MMP24	10893	broad.mit.edu	37	20	33851659	33851659	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:33851659G>A	uc002xbu.2	+	5	886	c.883G>A	c.(883-885)GAC>AAC	p.D295N	EDEM2_uc010zuv.1_Intron	NM_006690	NP_006681	Q9Y5R2	MMP24_HUMAN	matrix metalloproteinase 24 preproprotein	295	Extracellular (Potential).				proteolysis	integral to plasma membrane|proteinaceous extracellular matrix	calcium ion binding|enzyme activator activity|metalloendopeptidase activity|zinc ion binding				0			BRCA - Breast invasive adenocarcinoma(18;0.00252)			GCACTCCAGCGACCCCAGCGC	0.622													5	13					0	0	0.001168	0	0
UQCC	55245	broad.mit.edu	37	20	33971916	33971916	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:33971916G>A	uc002xcd.2	-	3	217	c.150C>T	c.(148-150)TCC>TCT	p.S50S	UQCC_uc010zuy.1_Intron|UQCC_uc010zuz.1_Intron|UQCC_uc010zva.1_Silent_p.S50S|UQCC_uc002xce.2_Silent_p.S50S|UQCC_uc002xcg.2_5'UTR|UQCC_uc010gfb.2_Silent_p.S50S|UQCC_uc010zvb.1_Intron|UQCC_uc002xcf.2_Intron|GDF5_uc010gfc.1_Intron|UQCC_uc002xci.1_Silent_p.S4S|UQCC_uc010gfd.1_Intron	NM_018244	NP_060714	Q9NVA1	UQCC_HUMAN	basic FGF-repressed Zic binding protein isoform	50						cytoplasmic membrane-bounded vesicle				breast(1)	1			BRCA - Breast invasive adenocarcinoma(18;0.00252)			CACATGCTCGGGACTGGCTCA	0.433													9	39					0	0	0.004482	0	0
GDF5	8200	broad.mit.edu	37	20	34025277	34025277	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:34025277G>A	uc002xck.1	-	1	751	c.432C>T	c.(430-432)TTC>TTT	p.F144F	GDF5_uc010gfc.1_Silent_p.F144F|GDF5_uc010zvc.1_Silent_p.F144F	NM_000557	NP_000548	P43026	GDF5_HUMAN	growth differentiation factor 5 preproprotein	144					cartilage development|cell-cell signaling|growth|transforming growth factor beta receptor signaling pathway	extracellular space	cytokine activity|growth factor activity				0	Lung NSC(9;0.00642)|all_lung(11;0.0094)		BRCA - Breast invasive adenocarcinoma(18;0.00663)			TCTTCAGCAGGAAGGAGCTGG	0.637													18	87					0	0	0.007413	0	0
CEP250	11190	broad.mit.edu	37	20	34078584	34078584	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:34078584C>T	uc002xcm.2	+	22	3379	c.2708C>T	c.(2707-2709)GCC>GTC	p.A903V	CEP250_uc010zve.1_Missense_Mutation_p.A271V	NM_007186	NP_009117	Q9BV73	CP250_HUMAN	centrosomal protein 2	903	Gln/Glu-rich.|Potential.				centriole-centriole cohesion|G2/M transition of mitotic cell cycle|protein localization|regulation of centriole-centriole cohesion	centriole|cilium|cytosol|microtubule basal body|perinuclear region of cytoplasm|protein complex	protein C-terminus binding|protein kinase binding			ovary(4)|central_nervous_system(1)	5	Lung NSC(9;0.00156)|all_lung(11;0.00243)		BRCA - Breast invasive adenocarcinoma(18;0.0106)			GCCATCCAGGCCCAGAGGGAA	0.552													44	64					0	0	0.014410	0	0
EPB41L1	2036	broad.mit.edu	37	20	34810307	34810307	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:34810307G>A	uc002xfb.2	+	21	2799	c.2628G>A	c.(2626-2628)AAG>AAA	p.K876K	EPB41L1_uc002xeu.2_Silent_p.K774K|EPB41L1_uc002xev.2_Silent_p.K875K|EPB41L1_uc002xew.2_Silent_p.K767K|EPB41L1_uc002xex.2_Silent_p.K696K|EPB41L1_uc002xey.2_Silent_p.K626K|EPB41L1_uc002xez.2_Silent_p.K774K|EPB41L1_uc010gfq.2_Silent_p.K974K	NM_012156	NP_036288	Q9H4G0	E41L1_HUMAN	erythrocyte membrane protein band 4.1-like 1	876	Carboxyl-terminal (CTD).				cortical actin cytoskeleton organization|synaptic transmission	cytoskeleton|cytosol|extrinsic to membrane|plasma membrane	actin binding|structural molecule activity			ovary(2)|pancreas(1)	3	Breast(12;0.0239)					AGAGGGACAAGAAGCCACAGG	0.542													18	26					0	0	0.006122	0	0
DLGAP4	22839	broad.mit.edu	37	20	35060370	35060370	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:35060370G>A	uc002xff.2	+	3	685	c.250G>A	c.(250-252)GAG>AAG	p.E84K	DLGAP4_uc010zvp.1_Missense_Mutation_p.E84K	NM_014902	NP_055717	Q9Y2H0	DLGP4_HUMAN	disks large-associated protein 4 isoform a	84					cell-cell signaling	membrane	protein binding			skin(2)|ovary(1)	3	Breast(12;0.0192)	Myeloproliferative disorder(115;0.00878)				CGAGGTGCCAGAGGAGAGCCC	0.632													9	38					0	0	0.010729	0	0
DLGAP4	22839	broad.mit.edu	37	20	35060385	35060385	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:35060385C>T	uc002xff.2	+	3	700	c.265C>T	c.(265-267)CCC>TCC	p.P89S	DLGAP4_uc010zvp.1_Missense_Mutation_p.P89S	NM_014902	NP_055717	Q9Y2H0	DLGP4_HUMAN	disks large-associated protein 4 isoform a	89					cell-cell signaling	membrane	protein binding			skin(2)|ovary(1)	3	Breast(12;0.0192)	Myeloproliferative disorder(115;0.00878)				GAGCCCCTTCCCCAGCCATGC	0.627													16	30					0	0	0.003163	0	0
TGIF2	60436	broad.mit.edu	37	20	35219809	35219809	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:35219809C>T	uc002xfn.2	+	3	862	c.689C>T	c.(688-690)CCT>CTT	p.P230L	C20orf24_uc002xfo.2_Intron	NM_021809	NP_068581	Q9GZN2	TGIF2_HUMAN	TGFB-induced factor homeobox 2	230	Repressive function.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			pancreas(1)|skin(1)	2	Breast(12;0.114)	Myeloproliferative disorder(115;0.00878)				ACTCCCATCCCTTTAGTCTCT	0.552													41	87					0	0	0.014410	0	0
C20orf132	140699	broad.mit.edu	37	20	35749412	35749412	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:35749412G>A	uc010zvu.1	-	18	2125	c.2034C>T	c.(2032-2034)CTC>CTT	p.L678L	C20orf132_uc002xgk.2_Silent_p.L300L	NM_152503	NP_689716	Q9H579	CT132_HUMAN	hypothetical protein LOC140699 isoform 1	Error:Variant_position_missing_in_Q9H579_after_alignment											0		Myeloproliferative disorder(115;0.00878)				TTCTGAGGAGGAGAGTCTTTG	0.463													7	15					0	0	0.003080	0	0
SRC	6714	broad.mit.edu	37	20	36028682	36028682	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:36028682G>A	uc002xgx.2	+	10	1473	c.1024G>A	c.(1024-1026)GAG>AAG	p.E342K	SRC_uc002xgy.2_Missense_Mutation_p.E342K	NM_005417	NP_005408	P12931	SRC_HUMAN	proto-oncogene tyrosine-protein kinase SRC	342	Protein kinase.				axon guidance|bone resorption|cell junction assembly|cellular membrane organization|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|interspecies interaction between organisms|intracellular protein kinase cascade|leukocyte migration|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of integrin activation|Ras protein signal transduction|regulation of bone resorption|regulation of vascular permeability|response to interleukin-1|signal complex assembly|T cell costimulation	caveola|cytosol|mitochondrial inner membrane	ATP binding|heme binding|integrin binding|ion channel binding|non-membrane spanning protein tyrosine kinase activity|SH2 domain binding|SH3/SH2 adaptor activity			large_intestine(10)|lung(1)|central_nervous_system(1)|endometrium(1)	13		Myeloproliferative disorder(115;0.00878)			Dasatinib(DB01254)	CATCGTCACGGAGTACATGAG	0.592													8	23					0	0	0.010729	0	0
PPP1R16B	26051	broad.mit.edu	37	20	37547012	37547012	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:37547012G>A	uc002xje.2	+	11	1596	c.1407G>A	c.(1405-1407)TGG>TGA	p.W469*	PPP1R16B_uc010ggc.2_Nonsense_Mutation_p.W427*	NM_015568	NP_056383	Q96T49	PP16B_HUMAN	protein phosphatase 1 regulatory inhibitor	469					regulation of filopodium assembly|signal transduction	nucleus|plasma membrane	protein phosphatase binding			upper_aerodigestive_tract(1)|kidney(1)|skin(1)	3		Myeloproliferative disorder(115;0.00878)				CCCCGCCCTGGAGCAGCTACA	0.637													27	52					0	0	0.003954	0	0
PTPRT	11122	broad.mit.edu	37	20	40790089	40790089	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:40790089C>T	uc002xkg.2	-	17	2769	c.2585G>A	c.(2584-2586)CGG>CAG	p.R862Q	PTPRT_uc010ggj.2_Missense_Mutation_p.R881Q|PTPRT_uc010ggi.2_Missense_Mutation_p.R65Q	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	862	Cytoplasmic (Potential).				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				GAACTGGTCCCGGGGGTAGCT	0.612													20	47					0	0	0.007413	0	0
PTPRT	11122	broad.mit.edu	37	20	40877449	40877449	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:40877449C>T	uc002xkg.2	-	14	2374	c.2190G>A	c.(2188-2190)CAG>CAA	p.Q730Q	PTPRT_uc010ggj.2_Silent_p.Q749Q	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	730	Extracellular (Potential).				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				TGTTAGAATTCTGGGTGGAGG	0.478													10	18					0	0	0.010729	0	0
PTPRT	11122	broad.mit.edu	37	20	40980823	40980823	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:40980823C>T	uc002xkg.2	-	10	1847	c.1663G>A	c.(1663-1665)GGT>AGT	p.G555S	PTPRT_uc010ggj.2_Missense_Mutation_p.G555S	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	555	Extracellular (Potential).|Fibronectin type-III 3.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				GGGTACAGACCCACAAAGAGG	0.567													25	53					0	0	0.003954	0	0
PTPRT	11122	broad.mit.edu	37	20	41306699	41306699	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:41306699G>A	uc002xkg.2	-	7	1144	c.960C>T	c.(958-960)ATC>ATT	p.I320I	PTPRT_uc010ggj.2_Silent_p.I320I	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	320	Extracellular (Potential).|Fibronectin type-III 1.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				CCTTCAGGATGATGGGGCCAT	0.587													22	51					0	0	0.014323	0	0
SGK2	10110	broad.mit.edu	37	20	42196633	42196633	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:42196633G>A	uc002xkv.2	+	4	621	c.402G>A	c.(400-402)AAG>AAA	p.K134K	SGK2_uc002xkt.2_RNA|SGK2_uc002xkr.2_Silent_p.K74K|SGK2_uc010ggm.2_Silent_p.K74K|SGK2_uc002xks.2_Silent_p.K74K|SGK2_uc002xku.2_Silent_p.K74K|SGK2_uc002xkq.1_Silent_p.K74K	NM_016276	NP_057360	Q9HBY8	SGK2_HUMAN	serum/glucocorticoid regulated kinase 2 isoform	134	Protein kinase.|Nuclear localization signal (By similarity).				intracellular protein kinase cascade|response to oxidative stress		ATP binding|potassium channel regulator activity|protein serine/threonine kinase activity|sodium channel regulator activity			lung(3)|upper_aerodigestive_tract(1)|breast(1)|central_nervous_system(1)	6		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.0031)			TCTTAAAGAAGAAAGAGGTAC	0.498													18	29					0	0	0.006122	0	0
IFT52	51098	broad.mit.edu	37	20	42265791	42265791	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:42265791C>T	uc002xkw.2	+	12	1140	c.1018C>T	c.(1018-1020)CCT>TCT	p.P340S	IFT52_uc002xky.2_Missense_Mutation_p.P340S|IFT52_uc002xkx.2_RNA|IFT52_uc010ggn.2_Missense_Mutation_p.P316S|IFT52_uc002xkz.2_Missense_Mutation_p.P340S	NM_016004	NP_057088	Q9Y366	IFT52_HUMAN	intraflagellar transport 52 homolog	340						intraflagellar transport particle B|microtubule-based flagellum	protein C-terminus binding			ovary(2)	2		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.0031)			TTAGGTTTTTCCTCCCAGTTT	0.398													25	44					0	0	0.002780	0	0
JPH2	57158	broad.mit.edu	37	20	42744384	42744384	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:42744384C>T	uc002xli.1	-	4	2804	c.1931G>A	c.(1930-1932)GGG>GAG	p.G644E		NM_020433	NP_065166	Q9BR39	JPH2_HUMAN	junctophilin 2 isoform 1	644	Cytoplasmic (Potential).				calcium ion transport into cytosol|regulation of ryanodine-sensitive calcium-release channel activity	integral to membrane|junctional sarcoplasmic reticulum membrane|plasma membrane					0		Myeloproliferative disorder(115;0.0122)	COAD - Colon adenocarcinoma(18;0.00189)			CTTGGTCAGCCCTCGAGCCTC	0.701													5	35					0	0	0.001984	0	0
GDAP1L1	78997	broad.mit.edu	37	20	42891969	42891969	+	Splice_Site	SNP	T	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:42891969T>C	uc002xlq.2	+	4	712	c.645_splice	c.e4+2	p.M215_splice	GDAP1L1_uc002xlp.1_Splice_Site_p.M215_splice|GDAP1L1_uc010zwl.1_Splice_Site_p.M234_splice|GDAP1L1_uc010zwm.1_Splice_Site_p.M157_splice|GDAP1L1_uc010zwn.1_Splice_Site_p.M23_splice	NM_024034	NP_076939	Q96MZ0	GD1L1_HUMAN	ganglioside-induced differentiation-associated											large_intestine(1)	1		Myeloproliferative disorder(115;0.0122)	COAD - Colon adenocarcinoma(18;0.00189)			AAGCTCATGGTGAGTACCTCC	0.498													31	65					0	0	0.008361	0	0
GDAP1L1	78997	broad.mit.edu	37	20	42907894	42907894	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:42907894G>A	uc002xlq.2	+	6	1125	c.1058G>A	c.(1057-1059)GGG>GAG	p.G353E	GDAP1L1_uc010zwl.1_Missense_Mutation_p.G372E|GDAP1L1_uc010zwm.1_Missense_Mutation_p.G295E|GDAP1L1_uc010zwn.1_Missense_Mutation_p.G161E	NM_024034	NP_076939	Q96MZ0	GD1L1_HUMAN	ganglioside-induced differentiation-associated	353										large_intestine(1)	1		Myeloproliferative disorder(115;0.0122)	COAD - Colon adenocarcinoma(18;0.00189)			TCCCTGGGTGGGATGGGCTAC	0.577													51	84					0	0	0.014410	0	0
HNF4A	3172	broad.mit.edu	37	20	43030112	43030112	+	Missense_Mutation	SNP	T	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:43030112T>A	uc002xma.2	+	1	189	c.100T>A	c.(100-102)TTG>ATG	p.L34M	HNF4A_uc010zwo.1_Intron|HNF4A_uc002xlt.2_Intron|HNF4A_uc002xlu.2_Intron|HNF4A_uc002xlv.2_Intron|uc002xlw.1_Intron|HNF4A_uc002xly.2_Missense_Mutation_p.L34M|HNF4A_uc002xlz.2_Missense_Mutation_p.L34M|HNF4A_uc010ggq.2_Translation_Start_Site	NM_000457	NP_000448	P41235	HNF4A_HUMAN	hepatocyte nuclear factor 4 alpha isoform b	34					blood coagulation|endocrine pancreas development|glucose homeostasis|negative regulation of cell growth|negative regulation of cell proliferation|ornithine metabolic process|phospholipid homeostasis|positive regulation of cholesterol homeostasis|regulation of growth hormone receptor signaling pathway|regulation of insulin secretion|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to glucose stimulus|triglyceride homeostasis|xenobiotic metabolic process	cytoplasm	activating transcription factor binding|protein homodimerization activity|receptor binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|steroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(1)|lung(1)|skin(1)	3		Myeloproliferative disorder(115;0.0122)	COAD - Colon adenocarcinoma(18;0.00189)			TGTGCAGGTGTTGACGATGGG	0.577													42	184					0	0	0.014410	0	0
HNF4A	3172	broad.mit.edu	37	20	43043289	43043290	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:43043289_43043290CC>TT	uc002xma.2	+	5	724_725	c.635_636CC>TT	c.(634-636)CCC>CTT	p.P212L	HNF4A_uc002xlt.2_Missense_Mutation_p.P190L|HNF4A_uc002xlu.2_Missense_Mutation_p.P190L|HNF4A_uc002xlv.2_Missense_Mutation_p.P190L|HNF4A_uc002xly.2_Missense_Mutation_p.P212L|HNF4A_uc002xlz.2_Missense_Mutation_p.P212L|HNF4A_uc010ggq.2_Missense_Mutation_p.P205L	NM_000457	NP_000448	P41235	HNF4A_HUMAN	hepatocyte nuclear factor 4 alpha isoform b	212					blood coagulation|endocrine pancreas development|glucose homeostasis|negative regulation of cell growth|negative regulation of cell proliferation|ornithine metabolic process|phospholipid homeostasis|positive regulation of cholesterol homeostasis|regulation of growth hormone receptor signaling pathway|regulation of insulin secretion|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to glucose stimulus|triglyceride homeostasis|xenobiotic metabolic process	cytoplasm	activating transcription factor binding|protein homodimerization activity|receptor binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|steroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(1)|lung(1)|skin(1)	3		Myeloproliferative disorder(115;0.0122)	COAD - Colon adenocarcinoma(18;0.00189)			TGCGAGCTCCCCCTGGACGACC	0.619													55	118					0	0	0.004672	0	0
RIMS4	140730	broad.mit.edu	37	20	43385568	43385568	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:43385568G>A	uc002xms.2	-	5	562	c.562C>T	c.(562-564)CCT>TCT	p.P188S	RIMS4_uc010ggu.2_Missense_Mutation_p.P189S	NM_182970	NP_892015	Q9H426	RIMS4_HUMAN	regulating synaptic membrane exocytosis 4	188	C2.				exocytosis|neurotransmitter transport	cell junction|synapse				ovary(4)|central_nervous_system(1)	5		Myeloproliferative disorder(115;0.0122)				GGACTCTCAGGAAACAGCAGC	0.552													19	187					0	0	0.014323	0	0
WFDC12	128488	broad.mit.edu	37	20	43752764	43752764	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:43752764C>T	uc002xnf.1	-	2	240	c.222G>A	c.(220-222)GTG>GTA	p.V74V		NM_080869	NP_543145	Q8WWY7	WFD12_HUMAN	WAP four-disulfide core domain 12 precursor	74	WAP.				defense response to bacterium	extracellular region	serine-type endopeptidase inhibitor activity				0		Myeloproliferative disorder(115;0.0122)				CCAGTTCCTTCACAGGAATCA	0.542													13	17					0	0	0.013537	0	0
SPINLW1	57119	broad.mit.edu	37	20	44174409	44174409	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:44174409C>T	uc002xou.2	-	2	124	c.92G>A	c.(91-93)AGG>AAG	p.R31K	SPINLW1_uc010zxc.1_Missense_Mutation_p.R31K|SPINLW1_uc002xot.2_Missense_Mutation_p.G15E|SPINLW1_uc002xov.1_Missense_Mutation_p.R31K	NM_020398	NP_065131	O95925	EPPI_HUMAN	serine peptidase inhibitor-like, with Kunitz and	31	WAP.					extracellular region	serine-type endopeptidase inhibitor activity			pancreas(1)	1		Myeloproliferative disorder(115;0.0122)				GGGACATCTCCCTAGGGAAAG	0.468													19	51					0	0	0.010504	0	0
WFDC8	90199	broad.mit.edu	37	20	44181880	44181880	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:44181880C>T	uc002xow.2	-	5	560	c.481G>A	c.(481-483)GAA>AAA	p.E161K	WFDC8_uc002xox.2_Missense_Mutation_p.E161K	NM_181510	NP_852611	Q8IUA0	WFDC8_HUMAN	WAP four-disulfide core domain 8 precursor	161	WAP 2.					extracellular region	serine-type endopeptidase inhibitor activity				0		Myeloproliferative disorder(115;0.0122)				TCCTTACGTTCAGTGAAAGGG	0.493													18	20					0	0	0.008871	0	0
WFDC8	90199	broad.mit.edu	37	20	44187548	44187548	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:44187548C>T	uc002xow.2	-	3	299	c.220G>A	c.(220-222)GAA>AAA	p.E74K	WFDC8_uc002xox.2_Missense_Mutation_p.E74K	NM_181510	NP_852611	Q8IUA0	WFDC8_HUMAN	WAP four-disulfide core domain 8 precursor	74	WAP 1.					extracellular region	serine-type endopeptidase inhibitor activity				0		Myeloproliferative disorder(115;0.0122)				TTCTGGTATTCCTTGCAGTCA	0.478													28	83					0	0	0.009535	0	0
WFDC8	90199	broad.mit.edu	37	20	44190850	44190850	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:44190850G>A	uc002xow.2	-	2	114	c.35C>T	c.(34-36)CCT>CTT	p.P12L	WFDC8_uc002xox.2_Missense_Mutation_p.P12L	NM_181510	NP_852611	Q8IUA0	WFDC8_HUMAN	WAP four-disulfide core domain 8 precursor	12						extracellular region	serine-type endopeptidase inhibitor activity				0		Myeloproliferative disorder(115;0.0122)				GCTATGGAGAGGAAAGTGCCT	0.378													9	12					0	0	0.004482	0	0
UBE2C	11065	broad.mit.edu	37	20	44443052	44443052	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:44443052C>T	uc002xpm.2	+	3	239	c.159C>T	c.(157-159)TTC>TTT	p.F53F	UBE2C_uc002xpl.2_Silent_p.F53F|UBE2C_uc002xpn.2_Silent_p.F14F|UBE2C_uc002xpo.2_Intron|UBE2C_uc002xpp.2_Intron|UBE2C_uc002xpq.2_Silent_p.F14F	NM_007019	NP_008950	O00762	UBE2C_HUMAN	ubiquitin-conjugating enzyme E2C isoform 1	53					activation of anaphase-promoting complex activity|anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|cyclin catabolic process|exit from mitosis|free ubiquitin chain polymerization|mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|phosphatidylinositol-mediated signaling|positive regulation of exit from mitosis|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination|protein K48-linked ubiquitination|spindle organization	anaphase-promoting complex|cytosol|nucleoplasm	ATP binding|protein binding|ubiquitin-protein ligase activity				0		Myeloproliferative disorder(115;0.0122)				TTTCTGCCTTCCCTGAATCAG	0.493													6	50					0	0	0.001984	0	0
CTSA	5476	broad.mit.edu	37	20	44523714	44523714	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:44523714C>T	uc002xqj.3	+	11	1504	c.1030C>T	c.(1030-1032)CCG>TCG	p.P344S	CTSA_uc002xqh.2_Missense_Mutation_p.P362S|CTSA_uc002xqi.2_RNA|CTSA_uc010zxi.1_Missense_Mutation_p.P345S|CTSA_uc002xqk.3_Missense_Mutation_p.P344S	NM_001127695	NP_001121167	P10619	PPGB_HUMAN	cathepsin A isoform b precursor	344					intracellular protein transport|proteolysis	endoplasmic reticulum|lysosome|nucleus	enzyme activator activity|protein binding|serine-type carboxypeptidase activity			ovary(1)	1		Myeloproliferative disorder(115;0.0122)				CCTCAACAACCCGTACGTGCG	0.607													9	16					0	0	0.006214	0	0
NCOA5	57727	broad.mit.edu	37	20	44690967	44690967	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:44690967G>A	uc002xrd.2	-	7	2240	c.1712C>T	c.(1711-1713)CCC>CTC	p.P571L	NCOA5_uc002xrc.2_3'UTR|NCOA5_uc002xre.2_Missense_Mutation_p.P571L	NM_020967	NP_066018	Q9HCD5	NCOA5_HUMAN	nuclear receptor coactivator 5	571	Transcription activation.				regulation of transcription, DNA-dependent|transcription, DNA-dependent|translation	nucleus	aminoacyl-tRNA ligase activity|ATP binding			central_nervous_system(1)|skin(1)	2		Myeloproliferative disorder(115;0.0122)				AGATCCCATGGGGGCCTGTGG	0.552													6	42					0	0	0.003080	0	0
SLC35C2	51006	broad.mit.edu	37	20	44980833	44980833	+	Missense_Mutation	SNP	G	A	A	rs138124634	byFrequency	TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:44980833G>A	uc002xro.2	-	8	1235	c.694C>T	c.(694-696)CGT>TGT	p.R232C	SLC35C2_uc002xrp.2_Missense_Mutation_p.R211C|SLC35C2_uc002xrq.2_Missense_Mutation_p.R232C|SLC35C2_uc002xrr.2_Missense_Mutation_p.R232C|SLC35C2_uc010zxn.1_Missense_Mutation_p.R97C|SLC35C2_uc010zxo.1_Missense_Mutation_p.R118C|SLC35C2_uc010zxp.1_Missense_Mutation_p.R261C	NM_173179	NP_775271	Q9NQQ7	S35C2_HUMAN	solute carrier family 35, member C2 isoform a	232					transport	integral to membrane				ovary(1)	1		Myeloproliferative disorder(115;0.0122)				TCCTGGAAACGGAAGATTTTC	0.582													18	66					0	0	0.008871	0	0
ZNF334	55713	broad.mit.edu	37	20	45131444	45131444	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:45131444C>T	uc002xsc.2	-	5	718	c.534G>A	c.(532-534)ATG>ATA	p.M178I	ZNF334_uc002xsa.2_Missense_Mutation_p.M201I|ZNF334_uc002xsb.2_Missense_Mutation_p.M140I|ZNF334_uc002xsd.2_Missense_Mutation_p.M140I|ZNF334_uc010ghl.2_Missense_Mutation_p.M177I	NM_018102	NP_060572	Q9HCZ1	ZN334_HUMAN	zinc finger protein 334 isoform a	178					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)	2		Myeloproliferative disorder(115;0.0122)				TGTATTTTTTCATTCCCAAAT	0.343													24	40					0	0	0.002780	0	0
ZMYND8	23613	broad.mit.edu	37	20	45927583	45927583	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:45927583G>A	uc002xta.1	-	4	537	c.283C>T	c.(283-285)CAC>TAC	p.H95Y	ZMYND8_uc010ghr.1_Missense_Mutation_p.H70Y|ZMYND8_uc002xst.1_Missense_Mutation_p.H70Y|ZMYND8_uc002xsu.1_Missense_Mutation_p.H95Y|ZMYND8_uc002xsv.1_Missense_Mutation_p.H70Y|ZMYND8_uc002xsw.1_5'UTR|ZMYND8_uc002xsx.1_5'UTR|ZMYND8_uc002xsy.1_Missense_Mutation_p.H70Y|ZMYND8_uc002xsz.1_Missense_Mutation_p.H70Y|ZMYND8_uc010zxy.1_Missense_Mutation_p.H122Y|ZMYND8_uc002xtb.1_Missense_Mutation_p.H115Y|ZMYND8_uc002xss.2_Missense_Mutation_p.H95Y|ZMYND8_uc010zxz.1_Missense_Mutation_p.H90Y|ZMYND8_uc002xtc.1_Missense_Mutation_p.H115Y|ZMYND8_uc002xtd.1_Missense_Mutation_p.H90Y|ZMYND8_uc002xte.1_Missense_Mutation_p.H95Y|ZMYND8_uc010zya.1_Missense_Mutation_p.H95Y|ZMYND8_uc002xtf.1_Missense_Mutation_p.H115Y|ZMYND8_uc002xtg.2_Missense_Mutation_p.H89Y|ZMYND8_uc010ghs.1_Missense_Mutation_p.H89Y|ZMYND8_uc002xth.2_Missense_Mutation_p.H115Y	NM_012408	NP_036540	Q9ULU4	PKCB1_HUMAN	zinc finger, MYND-type containing 8 isoform b	95	PHD-type.						protein binding|zinc ion binding			central_nervous_system(2)|urinary_tract(1)|ovary(1)|skin(1)	5			Epithelial(1;0.0289)|all cancers(1;0.0962)|OV - Ovarian serous cystadenocarcinoma(1;0.154)			CCTTCCCGGTGACAAACCCAG	0.517													16	49					0	0	0.004990	0	0
SULF2	55959	broad.mit.edu	37	20	46365584	46365584	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:46365584G>A	uc002xto.2	-	3	608	c.278C>T	c.(277-279)TCC>TTC	p.S93F	SULF2_uc002xtr.2_Missense_Mutation_p.S93F|SULF2_uc002xtq.2_Missense_Mutation_p.S93F|SULF2_uc010ghv.1_Missense_Mutation_p.S93F	NM_018837	NP_061325	Q8IWU5	SULF2_HUMAN	sulfatase 2 isoform a precursor	93					bone development|heparan sulfate proteoglycan metabolic process|kidney development|negative regulation of fibroblast growth factor receptor signaling pathway	cell surface|endoplasmic reticulum|extracellular space|Golgi stack	arylsulfatase activity|calcium ion binding			ovary(2)|breast(2)|pancreas(1)|skin(1)	6						GAGGATGGAGGAGCGTGAGGG	0.607													13	27					0	0	0.001855	0	0
SULF2	55959	broad.mit.edu	37	20	46365604	46365605	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:46365604_46365605GG>AT	uc002xto.2	-	3	587_588	c.257_258CC>AT	c.(256-258)CCC>CAT	p.P86H	SULF2_uc002xtr.2_Missense_Mutation_p.P86H|SULF2_uc002xtq.2_Missense_Mutation_p.P86H|SULF2_uc010ghv.1_Missense_Mutation_p.P86H	NM_018837	NP_061325	Q8IWU5	SULF2_HUMAN	sulfatase 2 isoform a precursor	86					bone development|heparan sulfate proteoglycan metabolic process|kidney development|negative regulation of fibroblast growth factor receptor signaling pathway	cell surface|endoplasmic reticulum|extracellular space|Golgi stack	arylsulfatase activity|calcium ion binding			ovary(2)|breast(2)|pancreas(1)|skin(1)	6						GGCAGCACATGGGTGTGGTCAC	0.589													5	41					0	0	0.004672	0	0
PREX1	57580	broad.mit.edu	37	20	47253040	47253040	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:47253040G>A	uc002xtw.1	-	32	4151	c.4128C>T	c.(4126-4128)GTC>GTT	p.V1376V	PREX1_uc002xtv.1_Silent_p.V673V	NM_020820	NP_065871	Q8TCU6	PREX1_HUMAN	phosphatidylinositol-3,4,	1376					actin filament polymerization|apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|neutrophil activation|small GTPase mediated signal transduction|superoxide metabolic process	cytosol|plasma membrane	enzyme binding|phospholipid binding|Rho GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			lung(3)|ovary(2)|pancreas(1)	6			BRCA - Breast invasive adenocarcinoma(12;0.0135)|Colorectal(8;0.198)			AGTGCAGCAGGACGCCCGTGG	0.721													6	10					0	0	0.004482	0	0
PREX1	57580	broad.mit.edu	37	20	47271867	47271867	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:47271867G>A	uc002xtw.1	-	19	2193	c.2170C>T	c.(2170-2172)CGT>TGT	p.R724C	PREX1_uc002xtv.1_Missense_Mutation_p.R21C	NM_020820	NP_065871	Q8TCU6	PREX1_HUMAN	phosphatidylinositol-3,4,	724					actin filament polymerization|apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|neutrophil activation|small GTPase mediated signal transduction|superoxide metabolic process	cytosol|plasma membrane	enzyme binding|phospholipid binding|Rho GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			lung(3)|ovary(2)|pancreas(1)	6			BRCA - Breast invasive adenocarcinoma(12;0.0135)|Colorectal(8;0.198)			GCAGCTCCACGAATCTGGAAG	0.562													4	16					0	0	0.001168	0	0
PREX1	57580	broad.mit.edu	37	20	47274731	47274731	+	Silent	SNP	G	A	A	rs147901913		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:47274731G>A	uc002xtw.1	-	17	1940	c.1917C>T	c.(1915-1917)ATC>ATT	p.I639I	PREX1_uc002xtv.1_5'Flank	NM_020820	NP_065871	Q8TCU6	PREX1_HUMAN	phosphatidylinositol-3,4,	639	PDZ.				actin filament polymerization|apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|neutrophil activation|small GTPase mediated signal transduction|superoxide metabolic process	cytosol|plasma membrane	enzyme binding|phospholipid binding|Rho GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			lung(3)|ovary(2)|pancreas(1)	6			BRCA - Breast invasive adenocarcinoma(12;0.0135)|Colorectal(8;0.198)			TCTTCTCCTCGATGTCAAAGC	0.672											OREG0026010	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	23	252					0	0	0.014323	0	0
KCNB1	3745	broad.mit.edu	37	20	47990547	47990547	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:47990547G>A	uc002xur.1	-	2	1714	c.1550C>T	c.(1549-1551)TCG>TTG	p.S517L	KCNB1_uc002xus.1_Missense_Mutation_p.S517L	NM_004975	NP_004966	Q14721	KCNB1_HUMAN	potassium voltage-gated channel, Shab-related	517	Poly-Ser.|Cytoplasmic (Potential).				energy reserve metabolic process|regulation of insulin secretion	voltage-gated potassium channel complex	protein binding|voltage-gated potassium channel activity			pancreas(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(12;0.000405)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			ACTAGAAGACGATCTGGCTTT	0.463													60	142					0	0	0.014410	0	0
FAM65C	140876	broad.mit.edu	37	20	49218764	49218764	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:49218764C>T	uc002xvm.2	-	13	1810	c.1492G>A	c.(1492-1494)GAG>AAG	p.E498K	FAM65C_uc010zyt.1_Missense_Mutation_p.E502K|FAM65C_uc010zyu.1_RNA|FAM65C_uc002xvn.1_Missense_Mutation_p.E498K	NM_080829	NP_543019	Q96MK2	FA65C_HUMAN	hypothetical protein LOC140876	498										ovary(2)	2						GCCCCTTCCTCGTGGCCGTTC	0.682													7	19					0	0	0.004482	0	0
ADNP	23394	broad.mit.edu	37	20	49509502	49509502	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:49509502G>A	uc002xvt.1	-	5	2094	c.1749C>T	c.(1747-1749)GCC>GCT	p.A583A	ADNP_uc002xvu.1_Silent_p.A583A	NM_015339	NP_056154	Q9H2P0	ADNP_HUMAN	activity-dependent neuroprotector	583						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2						GATTATTTTGGGCATGGTAAG	0.453													37	83					0	0	0.004878	0	0
ADNP	23394	broad.mit.edu	37	20	49510758	49510758	+	Missense_Mutation	SNP	A	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:49510758A>T	uc002xvt.1	-	5	838	c.493T>A	c.(493-495)TAT>AAT	p.Y165N	ADNP_uc002xvu.1_Missense_Mutation_p.Y165N	NM_015339	NP_056154	Q9H2P0	ADNP_HUMAN	activity-dependent neuroprotector	165	C2H2-type 3.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2						TTACAGTAATAAACAGCTTGC	0.428													19	111					0	0	0.014323	0	0
KCNG1	3755	broad.mit.edu	37	20	49620806	49620806	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:49620806G>A	uc002xwa.3	-	3	1607	c.1312C>T	c.(1312-1314)CAG>TAG	p.Q438*		NM_002237	NP_002228	Q9UIX4	KCNG1_HUMAN	potassium voltage-gated channel, subfamily G,	438						voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)|central_nervous_system(1)	2						GCCACTACCTGGCCCGGGGTG	0.632													19	49					0	0	0.002780	0	0
KCNG1	3755	broad.mit.edu	37	20	49626804	49626804	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:49626804G>A	uc002xwa.3	-	2	367	c.72C>T	c.(70-72)TTC>TTT	p.F24F	KCNG1_uc002xwb.2_Silent_p.F24F	NM_002237	NP_002228	Q9UIX4	KCNG1_HUMAN	potassium voltage-gated channel, subfamily G,	24	Cytoplasmic (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)|central_nervous_system(1)	2						AGGCCGGGTGGAAGGAGGCGT	0.677													8	29					0	0	0.004482	0	0
ZFP64	55734	broad.mit.edu	37	20	50701796	50701796	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:50701796G>A	uc002xwk.2	-	9	1587	c.1238C>T	c.(1237-1239)CCC>CTC	p.P413L	ZFP64_uc002xwj.2_Missense_Mutation_p.P194L	NM_199427	NP_955459	Q9NPA5	ZF64A_HUMAN	zinc finger protein 64 isoform d	370					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2						GCACTGGAAGGGGGTATCCCC	0.542													9	10					0	0	0.006214	0	0
TSHZ2	128553	broad.mit.edu	37	20	51871280	51871280	+	Missense_Mutation	SNP	A	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:51871280A>C	uc002xwo.2	+	2	2239	c.1283A>C	c.(1282-1284)AAA>ACA	p.K428T		NM_173485	NP_775756	Q9NRE2	TSH2_HUMAN	teashirt zinc finger homeobox 2	428					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|haematopoietic_and_lymphoid_tissue(1)	6			STAD - Stomach adenocarcinoma(23;0.1)			GCAGTGGAGAAAATGCAGTCG	0.502													35	83					0	0	0.005524	0	0
TSHZ2	128553	broad.mit.edu	37	20	51872921	51872921	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:51872921C>T	uc002xwo.2	+	2	3880	c.2924C>T	c.(2923-2925)TCG>TTG	p.S975L		NM_173485	NP_775756	Q9NRE2	TSH2_HUMAN	teashirt zinc finger homeobox 2	975					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|haematopoietic_and_lymphoid_tissue(1)	6			STAD - Stomach adenocarcinoma(23;0.1)			TCCCGGGTATCGTCGGCTCAG	0.493													9	33					0	0	0.006214	0	0
CASS4	57091	broad.mit.edu	37	20	55012393	55012393	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:55012393C>T	uc002xxp.2	+	3	435	c.210C>T	c.(208-210)ATC>ATT	p.I70I	CASS4_uc002xxq.3_Silent_p.I70I|CASS4_uc002xxr.2_Silent_p.I70I|CASS4_uc010zze.1_Silent_p.I70I|CASS4_uc010gio.2_Silent_p.I70I	NM_001164116	NP_001157588	Q9NQ75	CASS4_HUMAN	HEF-like protein isoform a	70	SH3.				cell adhesion	cytoplasm|cytoskeleton|focal adhesion	two-component sensor activity			ovary(2)|skin(1)	3						GCCTCCAAATCCTCACGGAGG	0.612													6	38					0	0	0.001984	0	0
TFAP2C	7022	broad.mit.edu	37	20	55206395	55206395	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:55206395C>T	uc002xya.2	+	2	426	c.183C>T	c.(181-183)CCC>CCT	p.P61P	TFAP2C_uc010zzi.1_5'UTR	NM_003222	NP_003213	Q92754	AP2C_HUMAN	transcription factor AP-2 gamma	61	WW-binding.|Gln/Pro-rich (transactivation domain).				cell-cell signaling|male gonad development|regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1			Colorectal(105;0.229)			CCTACTTTCCCCCTCCCTACC	0.701													5	25					0	0	0.001168	0	0
CTCFL	140690	broad.mit.edu	37	20	56098996	56098996	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:56098996G>A	uc010gix.1	-	1	928	c.266C>T	c.(265-267)TCT>TTT	p.S89F	CTCFL_uc010giw.1_Missense_Mutation_p.S89F|CTCFL_uc002xym.2_Missense_Mutation_p.S89F|CTCFL_uc010giz.1_Intron|CTCFL_uc010giy.1_Intron|CTCFL_uc010gja.1_Missense_Mutation_p.S89F|CTCFL_uc010gjb.1_Missense_Mutation_p.S89F|CTCFL_uc010gjc.1_Missense_Mutation_p.S89F|CTCFL_uc010gjd.1_Missense_Mutation_p.S89F|CTCFL_uc010gje.2_Missense_Mutation_p.S89F|CTCFL_uc010gjf.2_Intron|CTCFL_uc010gjg.2_Intron|CTCFL_uc010gjh.1_Missense_Mutation_p.S89F|CTCFL_uc010gji.1_Intron|CTCFL_uc010gjj.1_Missense_Mutation_p.S89F|CTCFL_uc010gjk.1_Missense_Mutation_p.S89F|CTCFL_uc010gjl.1_Missense_Mutation_p.S89F	NM_080618	NP_542185	Q8NI51	CTCFL_HUMAN	CCCTC-binding factor-like protein	89					cell cycle|DNA methylation involved in gamete generation|histone methylation|positive regulation of transcription, DNA-dependent|regulation of gene expression by genetic imprinting|regulation of histone H3-K4 methylation|transcription, DNA-dependent	cytoplasm|nucleus	histone binding|sequence-specific DNA binding|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|large_intestine(1)|skin(1)	4	Lung NSC(12;0.00132)|all_lung(29;0.00433)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(13;3.95e-12)|Epithelial(14;3.41e-08)|all cancers(14;2.09e-07)			CACAGCTTCAGAAGTGAAGTG	0.587													16	41					0	0	0.004007	0	0
C20orf85	128602	broad.mit.edu	37	20	56728623	56728623	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:56728623C>T	uc002xyv.2	+	2	130	c.92C>T	c.(91-93)TCG>TTG	p.S31L		NM_178456	NP_848551	Q9H1P6	CT085_HUMAN	hypothetical protein LOC128602	31										ovary(1)	1	all_epithelial(3;5.99e-14)|Lung NSC(12;0.000152)|all_lung(29;0.000518)|Melanoma(10;0.118)		BRCA - Breast invasive adenocarcinoma(13;5.53e-12)|Epithelial(14;7.42e-08)|all cancers(14;7.19e-07)			AAGGCTGAATCGGAAGCACGG	0.473													29	53					0	0	0.013726	0	0
VAPB	9217	broad.mit.edu	37	20	56993269	56993269	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:56993269C>T	uc002xza.2	+	2	332	c.61C>T	c.(61-63)CCC>TCC	p.P21S	VAPB_uc002xzb.2_RNA|VAPB_uc010zzo.1_5'UTR|VAPB_uc002xzc.2_Missense_Mutation_p.P21S	NM_004738	NP_004729	O95292	VAPB_HUMAN	VAMP-associated protein B/C	21	Cytoplasmic (Potential).|MSP.				cell death|endoplasmic reticulum unfolded protein response|positive regulation of viral genome replication|sphingolipid metabolic process|virus-host interaction	endoplasmic reticulum membrane|Golgi apparatus|integral to membrane	beta-tubulin binding|enzyme binding|protein heterodimerization activity|protein homodimerization activity|structural molecule activity			kidney(1)	1	Lung NSC(12;0.000615)|all_lung(29;0.00186)		BRCA - Breast invasive adenocarcinoma(13;6.2e-12)|Epithelial(14;3.7e-08)|all cancers(14;3.88e-07)			TTCTACAGGTCCCTTCACCGA	0.448													18	65					0	0	0.008871	0	0
GNAS	2778	broad.mit.edu	37	20	57429085	57429085	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:57429085C>T	uc002xzw.2	+	1	1050	c.765C>T	c.(763-765)TTC>TTT	p.F255F	GNAS_uc002xzt.2_Intron|GNAS_uc002xzu.3_Intron|GNAS_uc010gjq.2_Intron|GNAS_uc002xzv.2_RNA	NM_080425	NP_536350	P63092	GNAS2_HUMAN	GNAS complex locus XLas	Error:Variant_position_missing_in_P63092_after_alignment					activation of adenylate cyclase activity|cellular response to glucagon stimulus|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|intracellular transport|platelet activation|regulation of insulin secretion|sensory perception of smell|transmembrane transport|water transport	heterotrimeric G-protein complex|intrinsic to membrane|trans-Golgi network membrane	adenylate cyclase activity|GTP binding|GTPase activity|guanyl-nucleotide exchange factor activity|identical protein binding|signal transducer activity			pituitary(201)|thyroid(35)|ovary(15)|adrenal_gland(9)|liver(7)|large_intestine(5)|parathyroid(5)|kidney(5)|haematopoietic_and_lymphoid_tissue(3)|lung(2)|testis(1)|stomach(1)|small_intestine(1)|autonomic_ganglia(1)|pancreas(1)	292	all_lung(29;0.0104)		BRCA - Breast invasive adenocarcinoma(13;2.19e-08)|Colorectal(105;0.109)			GCAGCCAGTTCGCGGCAGTCG	0.662			Mis		pituitary adenoma		McCune-Albright syndrome; pseudohypoparathyroidism|type IA		3-Methylglutaconic_Aciduria_and_Myelodysplasia|McCune-Albright_syndrome|Mazabraud_syndrome	TSP Lung(22;0.16)			8	12					0	0	0.004482	0	0
ZNF831	128611	broad.mit.edu	37	20	57766169	57766169	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:57766169C>T	uc002yan.2	+	1	95	c.95C>T	c.(94-96)TCA>TTA	p.S32L		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	32	Pro-rich.					intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					GGCCAGGCCTCACCTCACCTG	0.697													6	42					0	0	0.001168	0	0
ZNF831	128611	broad.mit.edu	37	20	57771038	57771038	+	Nonsense_Mutation	SNP	A	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:57771038A>T	uc002yan.2	+	2	3853	c.3853A>T	c.(3853-3855)AAA>TAA	p.K1285*		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	1285						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					CAAGCAGAGAAAACTGAAGAT	0.498													39	60					0	0	0.006230	0	0
PHACTR3	116154	broad.mit.edu	37	20	58342337	58342337	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:58342337C>T	uc002yau.2	+	5	1105	c.638C>T	c.(637-639)TCC>TTC	p.S213F	PHACTR3_uc002yat.2_Missense_Mutation_p.S210F|PHACTR3_uc010zzw.1_Missense_Mutation_p.S172F|PHACTR3_uc002yav.2_Missense_Mutation_p.S172F|PHACTR3_uc002yaw.2_Missense_Mutation_p.S172F|PHACTR3_uc002yax.2_Intron	NM_080672	NP_542403	Q96KR7	PHAR3_HUMAN	phosphatase and actin regulator 3 isoform 1	213						nuclear matrix	actin binding|protein phosphatase inhibitor activity			ovary(2)|pancreas(1)	3	all_lung(29;0.00344)		BRCA - Breast invasive adenocarcinoma(7;2.76e-09)			GGGGCTGACTCCCTGGACAGT	0.632													11	25					0	0	0.008291	0	0
CDH4	1002	broad.mit.edu	37	20	60419756	60419756	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:60419756C>T	uc002ybn.1	+	5	623	c.609C>T	c.(607-609)ATC>ATT	p.I203I	CDH4_uc002ybp.1_Silent_p.I129I	NM_001794	NP_001785	P55283	CADH4_HUMAN	cadherin 4, type 1 preproprotein	203	Cadherin 1.|Extracellular (Potential).				adherens junction organization|cell junction assembly		calcium ion binding			lung(3)|ovary(2)|skin(1)	6			BRCA - Breast invasive adenocarcinoma(19;2.36e-08)			ACATCCCCATCCGGTACAGCA	0.602													21	48					0	0	0.004656	0	0
CDH4	1002	broad.mit.edu	37	20	60499465	60499465	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:60499465G>A	uc002ybn.1	+	11	1716	c.1702G>A	c.(1702-1704)GTG>ATG	p.V568M	CDH4_uc002ybp.1_Missense_Mutation_p.V494M	NM_001794	NP_001785	P55283	CADH4_HUMAN	cadherin 4, type 1 preproprotein	568	Cadherin 4.|Extracellular (Potential).				adherens junction organization|cell junction assembly		calcium ion binding			lung(3)|ovary(2)|skin(1)	6			BRCA - Breast invasive adenocarcinoma(19;2.36e-08)			CACGGCGGCAGTGCTGGACCG	0.617													7	31					0	0	0.003080	0	0
TAF4	6874	broad.mit.edu	37	20	60589718	60589718	+	Missense_Mutation	SNP	G	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:60589718G>C	uc002ybs.2	-	2	1406	c.1406C>G	c.(1405-1407)CCT>CGT	p.P469R		NM_003185	NP_003176	O00268	TAF4_HUMAN	TBP-associated factor 4	469					interspecies interaction between organisms|positive regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|viral reproduction	cytoplasm|MLL1 complex|transcription factor TFIID complex|transcription factor TFTC complex	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			ovary(2)|pancreas(1)	3	Breast(26;1e-08)		BRCA - Breast invasive adenocarcinoma(19;3.1e-07)			GGCCTGCTGAGGAATCATTAA	0.627													16	40					0	0	0.004990	0	0
OSBPL2	9885	broad.mit.edu	37	20	60854366	60854366	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:60854366C>T	uc002yck.1	+	7	847	c.645C>T	c.(643-645)CCC>CCT	p.P215P	OSBPL2_uc002ycl.1_Silent_p.P203P|OSBPL2_uc011aah.1_Silent_p.P123P|OSBPL2_uc002ycm.1_Missense_Mutation_p.P24L	NM_144498	NP_653081	Q9H1P3	OSBL2_HUMAN	oxysterol-binding protein-like protein 2 isoform	215					lipid transport		lipid binding			ovary(1)|central_nervous_system(1)	2	Breast(26;7.76e-09)		BRCA - Breast invasive adenocarcinoma(19;1.33e-06)			AGGCGGAGCCCCGAGGCACCA	0.582													11	20					0	0	0.013537	0	0
OSBPL2	9885	broad.mit.edu	37	20	60854378	60854378	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:60854378C>T	uc002yck.1	+	7	859	c.657C>T	c.(655-657)ATC>ATT	p.I219I	OSBPL2_uc002ycl.1_Silent_p.I207I|OSBPL2_uc011aah.1_Silent_p.I127I|OSBPL2_uc002ycm.1_Missense_Mutation_p.S28L	NM_144498	NP_653081	Q9H1P3	OSBL2_HUMAN	oxysterol-binding protein-like protein 2 isoform	219					lipid transport		lipid binding			ovary(1)|central_nervous_system(1)	2	Breast(26;7.76e-09)		BRCA - Breast invasive adenocarcinoma(19;1.33e-06)			GAGGCACCATCACCCTGGAGC	0.572													10	18					0	0	0.006214	0	0
LAMA5	3911	broad.mit.edu	37	20	60887028	60887028	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:60887028C>T	uc002ycq.2	-	70	9650	c.9583G>A	c.(9583-9585)GGC>AGC	p.G3195S		NM_005560	NP_005551	O15230	LAMA5_HUMAN	laminin alpha 5 precursor	3195	Laminin G-like 3.				angiogenesis|cell proliferation|cell recognition|cytoskeleton organization|endothelial cell differentiation|focal adhesion assembly|integrin-mediated signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-11 complex	integrin binding			ovary(1)|pancreas(1)|skin(1)	3	Breast(26;1.57e-08)		BRCA - Breast invasive adenocarcinoma(19;4.36e-06)		Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	TCGGCGAAGCCCGCTTGAGTT	0.647													16	51					0	0	0.004007	0	0
NTSR1	4923	broad.mit.edu	37	20	61391529	61391529	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:61391529G>A	uc002ydf.2	+	4	1538	c.1167G>A	c.(1165-1167)AGG>AGA	p.R389R		NM_002531	NP_002522	P30989	NTR1_HUMAN	neurotensin receptor 1	389	Cytoplasmic (Potential).					endoplasmic reticulum|Golgi apparatus|integral to plasma membrane	neurotensin receptor activity, G-protein coupled			skin(2)|lung(1)|central_nervous_system(1)	4	Breast(26;3.65e-08)		BRCA - Breast invasive adenocarcinoma(19;3.63e-06)			GGCGGCGCAGGAGGAAGAGGC	0.642													15	62					0	0	0.002450	0	0
DIDO1	11083	broad.mit.edu	37	20	61511969	61511969	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:61511969G>A	uc002ydr.1	-	16	5603	c.5339C>T	c.(5338-5340)CCG>CTG	p.P1780L	DIDO1_uc002yds.1_Missense_Mutation_p.P1780L	NM_033081	NP_149072	Q9BTC0	DIDO1_HUMAN	death inducer-obliterator 1 isoform c	1780	Pro-rich.				apoptosis|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(3)|skin(3)	6	Breast(26;5.68e-08)					TTCTGGAAACGGAGGGGCTGG	0.627													23	99					0	0	0.002780	0	0
DIDO1	11083	broad.mit.edu	37	20	61513529	61513529	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:61513529G>A	uc002ydr.1	-	16	4043	c.3779C>T	c.(3778-3780)TCG>TTG	p.S1260L	DIDO1_uc002yds.1_Missense_Mutation_p.S1260L	NM_033081	NP_149072	Q9BTC0	DIDO1_HUMAN	death inducer-obliterator 1 isoform c	1260	Pro-rich.				apoptosis|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(3)|skin(3)	6	Breast(26;5.68e-08)					AGGCGGCGGCGACCCAGGAGG	0.617													47	126					0	0	0.014410	0	0
C20orf11	54994	broad.mit.edu	37	20	61574861	61574861	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:61574861C>T	uc002ydy.2	+	4	507	c.330C>T	c.(328-330)ATC>ATT	p.I110I		NM_017896	NP_060366	Q9NWU2	CT011_HUMAN	chromosome 20 open reading frame 11	110	CTLH.					nucleus	protein binding				0	Breast(26;5.68e-08)					AGCATTTGATCGAGCTGATCC	0.607													13	24					0	0	0.002450	0	0
ARFGAP1	55738	broad.mit.edu	37	20	61908620	61908621	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:61908620_61908621CC>AT	uc002yem.2	+	5	518_519	c.406_407CC>AT	c.(406-408)CCA>ATA	p.P136I	ARFGAP1_uc011aas.1_Missense_Mutation_p.P83I|ARFGAP1_uc011aat.1_Intron|ARFGAP1_uc002yel.2_Missense_Mutation_p.P136I|ARFGAP1_uc002yen.2_Missense_Mutation_p.P136I	NM_018209	NP_060679	Q8N6T3	ARFG1_HUMAN	ADP-ribosylation factor GTPase activating	136					COPI coating of Golgi vesicle|protein transport|regulation of ARF GTPase activity|retrograde vesicle-mediated transport, Golgi to ER	cytosol|Golgi-associated vesicle membrane	ARF GTPase activator activity|zinc ion binding			pancreas(1)	1	all_cancers(38;1.59e-09)					GAACTGGACCCCACCTCAGCCC	0.584													6	25					0	0	0.004672	0	0
COL20A1	57642	broad.mit.edu	37	20	61945238	61945238	+	Nonsense_Mutation	SNP	A	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:61945238A>T	uc011aau.1	+	18	2453	c.2353A>T	c.(2353-2355)AAA>TAA	p.K785*	COL20A1_uc011aav.1_Nonsense_Mutation_p.K606*	NM_020882	NP_065933	Q9P218	COKA1_HUMAN	collagen, type XX, alpha 1	785	Fibronectin type-III 6.				cell adhesion	collagen|extracellular space	structural molecule activity			central_nervous_system(1)	1	all_cancers(38;1.39e-10)					GGGACCCGAGAAATCCGTGAG	0.667													5	22					0	0	0.001984	0	0
COL20A1	57642	broad.mit.edu	37	20	61959771	61959771	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:61959771C>T	uc011aau.1	+	34	3802	c.3702C>T	c.(3700-3702)CCC>CCT	p.P1234P	COL20A1_uc011aav.1_Silent_p.P1061P	NM_020882	NP_065933	Q9P218	COKA1_HUMAN	collagen, type XX, alpha 1	1234					cell adhesion	collagen|extracellular space	structural molecule activity			central_nervous_system(1)	1	all_cancers(38;1.39e-10)					GCACTGAGCCCCTGGGGTCCC	0.657													10	17					0	0	0.006214	0	0
KCNQ2	3785	broad.mit.edu	37	20	62046258	62046258	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:62046258T>C	uc002yey.1	-	13	1700	c.1523A>G	c.(1522-1524)GAA>GGA	p.E508G	KCNQ2_uc002yez.1_Missense_Mutation_p.E478G|KCNQ2_uc002yfa.1_Missense_Mutation_p.E490G|KCNQ2_uc002yfb.1_Missense_Mutation_p.E480G	NM_172107	NP_742105	O43526	KCNQ2_HUMAN	potassium voltage-gated channel KQT-like protein	508	Cytoplasmic (Potential).				axon guidance|synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			upper_aerodigestive_tract(1)|ovary(1)	2	all_cancers(38;1.24e-11)		BRCA - Breast invasive adenocarcinoma(10;1.04e-05)		Amitriptyline(DB00321)	ACACCCACCTTCTGAGTTCTG	0.662													18	91					0	0	0.006122	0	0
PTK6	5753	broad.mit.edu	37	20	62163970	62163970	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:62163970G>A	uc002yfg.2	-	5	781	c.741C>T	c.(739-741)ATC>ATT	p.I247I	PTK6_uc011aay.1_Silent_p.I146I|PTK6_uc011aaz.1_Silent_p.I9I	NM_005975	NP_005966	Q13882	PTK6_HUMAN	PTK6 protein tyrosine kinase 6	247	Protein kinase.					cytoplasm|nucleus	ATP binding|non-membrane spanning protein tyrosine kinase activity			stomach(1)|kidney(1)	2	all_cancers(38;2.51e-11)		Epithelial(9;1.5e-08)|all cancers(9;8.67e-08)|BRCA - Breast invasive adenocarcinoma(10;6.43e-06)			ACAGCGCCAGGATGTGTTTGT	0.647													22	40					0	0	0.002780	0	0
UCKL1	54963	broad.mit.edu	37	20	62571990	62571990	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:62571990C>T	uc010gkn.2	-	12	1302	c.1259G>A	c.(1258-1260)GGC>GAC	p.G420D	UCKL1_uc002yhj.2_Missense_Mutation_p.G63D|UCKL1_uc011abm.1_Missense_Mutation_p.G405D|UCKL1_uc011abn.1_RNA	NM_017859	NP_060329	Q9NWZ5	UCKL1_HUMAN	uridine-cytidine kinase 1-like 1	420					interspecies interaction between organisms	endoplasmic reticulum|nucleus	ATP binding|phosphotransferase activity, alcohol group as acceptor|protein binding|uridine kinase activity				0	all_cancers(38;2.14e-11)|all_epithelial(29;3.41e-13)|Lung NSC(23;3.41e-09)|all_lung(23;1.06e-08)					GAGGATGGTGCCGATGCGCAC	0.677													10	16					0	0	0.006214	0	0
TCEA2	6919	broad.mit.edu	37	20	62698298	62698298	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:62698298C>T	uc011abs.1	+	3	822	c.166C>T	c.(166-168)CTT>TTT	p.L56F	TCEA2_uc011abr.1_Missense_Mutation_p.L29F|TCEA2_uc010gkq.2_Missense_Mutation_p.L29F|TCEA2_uc010gks.2_Missense_Mutation_p.L56F|TCEA2_uc010gkt.2_Missense_Mutation_p.L29F|TCEA2_uc010gku.1_Missense_Mutation_p.L29F	NM_003195	NP_003186	Q15560	TCEA2_HUMAN	transcription elongation factor A protein 2	56	TFIIS N-terminal.				regulation of transcription elongation, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription elongation, DNA-dependent	transcription elongation factor complex	DNA binding|protein binding|translation elongation factor activity|zinc ion binding				0	all_cancers(38;3.45e-11)|all_epithelial(29;9.12e-13)|Lung NSC(23;2e-09)|all_lung(23;6.77e-09)					TGTCAACGCCCTTCGGAAGCA	0.622													3	14					0	0	0.004672	0	0
TCEA2	6919	broad.mit.edu	37	20	62701940	62701941	+	Silent	DNP	CC	TT	TT			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:62701940_62701941CC>TT	uc011abs.1	+	8	1427_1428	c.771_772CC>TT	c.(769-774)GACCTG>GATTTG	p.257_258DL>DL	TCEA2_uc011abr.1_Silent_p.230_231DL>DL|TCEA2_uc010gks.2_Silent_p.258_259DL>DL	NM_003195	NP_003186	Q15560	TCEA2_HUMAN	transcription elongation factor A protein 2	257_258	TFIIS-type.				regulation of transcription elongation, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription elongation, DNA-dependent	transcription elongation factor complex	DNA binding|protein binding|translation elongation factor activity|zinc ion binding				0	all_cancers(38;3.45e-11)|all_epithelial(29;9.12e-13)|Lung NSC(23;2e-09)|all_lung(23;6.77e-09)					CGCAGACAGACCTGTTCACCTG	0.629													6	10					0	0	0.004672	0	0
TPTE	7179	broad.mit.edu	37	21	10916373	10916373	+	Missense_Mutation	SNP	G	A	A	rs138794341	byFrequency	TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr21:10916373G>A	uc002yip.1	-	20	1641	c.1273C>T	c.(1273-1275)CCT>TCT	p.P425S	TPTE_uc002yis.1_Intron|TPTE_uc002yiq.1_Missense_Mutation_p.P407S|TPTE_uc002yir.1_Missense_Mutation_p.P387S|TPTE_uc010gkv.1_Missense_Mutation_p.P287S	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	425	C2 tensin-type.				signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		CACTTACGAGGAATCGAATAA	0.388													13	51					0	0	0.013537	0	0
TPTE	7179	broad.mit.edu	37	21	10943004	10943004	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr21:10943004G>A	uc002yip.1	-	12	951	c.583C>T	c.(583-585)CGA>TGA	p.R195*	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Nonsense_Mutation_p.R177*|TPTE_uc002yir.1_Nonsense_Mutation_p.R157*|TPTE_uc010gkv.1_Nonsense_Mutation_p.R57*	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	195					signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		CGTAGAAGTCGAAGTAAATGT	0.284													11	27					0	0	0.008291	0	0
TPTE	7179	broad.mit.edu	37	21	10969106	10969106	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr21:10969106C>T	uc002yip.1	-	7	510	c.142G>A	c.(142-144)GGA>AGA	p.G48R	TPTE_uc002yis.1_Intron|TPTE_uc002yiq.1_Intron|TPTE_uc002yir.1_Intron|TPTE_uc010gkv.1_Intron	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	48					signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		CGGGCTGCTCCTTTAAATTCA	0.318													31	97					0	0	0.007835	0	0
LIPI	149998	broad.mit.edu	37	21	15538721	15538721	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr21:15538721C>T	uc002yjm.2	-	5	768	c.758G>A	c.(757-759)GGA>GAA	p.G253E	LIPI_uc010gkw.1_Intron	NM_198996	NP_945347	Q6XZB0	LIPI_HUMAN	lipase, member I	232					lipid catabolic process	extracellular region|extracellular space|membrane|plasma membrane	heparin binding|phospholipase activity			ovary(2)	2				Epithelial(23;0.000155)|COAD - Colon adenocarcinoma(22;0.0015)|Colorectal(24;0.00693)|Lung(58;0.166)		TTGTTTATTTCCTCCATTTGG	0.343													19	27					0	0	0.010504	0	0
NCAM2	4685	broad.mit.edu	37	21	22804491	22804491	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr21:22804491C>T	uc002yld.1	+	12	1793	c.1544C>T	c.(1543-1545)TCC>TTC	p.S515F	NCAM2_uc011acb.1_Missense_Mutation_p.S373F	NM_004540	NP_004531	O15394	NCAM2_HUMAN	neural cell adhesion molecule 2 precursor	515	Fibronectin type-III 1.|Extracellular (Potential).				neuron cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)	4		Lung NSC(9;0.195)		all cancers(11;0.00102)|OV - Ovarian serous cystadenocarcinoma(11;0.00121)|Epithelial(23;0.00147)|Colorectal(24;0.174)		GCCAAGGTTTCCTTCAACAAA	0.453													19	17					0	0	0.014323	0	0
NCAM2	4685	broad.mit.edu	37	21	22841002	22841002	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr21:22841002C>T	uc002yld.1	+	14	2043	c.1794C>T	c.(1792-1794)TCC>TCT	p.S598S	NCAM2_uc011acb.1_Silent_p.S456S	NM_004540	NP_004531	O15394	NCAM2_HUMAN	neural cell adhesion molecule 2 precursor	598	Fibronectin type-III 2.|Extracellular (Potential).				neuron cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)	4		Lung NSC(9;0.195)		all cancers(11;0.00102)|OV - Ovarian serous cystadenocarcinoma(11;0.00121)|Epithelial(23;0.00147)|Colorectal(24;0.174)		GTCCTCCATCCATACATGGAC	0.368													15	11					0	0	0.008871	0	0
APP	351	broad.mit.edu	37	21	27423460	27423460	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr21:27423460G>A	uc002ylz.2	-	5	718	c.518C>T	c.(517-519)CCC>CTC	p.P173L	APP_uc010glk.2_Missense_Mutation_p.P168L|APP_uc002yma.2_Missense_Mutation_p.P173L|APP_uc011ach.1_Missense_Mutation_p.P117L|APP_uc002ymb.2_Missense_Mutation_p.P173L|APP_uc010glj.2_Missense_Mutation_p.P117L|APP_uc011aci.1_Missense_Mutation_p.P138L|APP_uc011acj.1_Missense_Mutation_p.P173L	NM_000484	NP_000475	P05067	A4_HUMAN	amyloid beta A4 protein isoform a precursor	173	Extracellular (Potential).				adult locomotory behavior|axon cargo transport|axon midline choice point recognition|cell adhesion|cellular copper ion homeostasis|collateral sprouting in absence of injury|dendrite development|endocytosis|extracellular matrix organization|G2 phase of mitotic cell cycle|innate immune response|ionotropic glutamate receptor signaling pathway|mating behavior|mRNA polyadenylation|neuron apoptosis|neuron remodeling|Notch signaling pathway|platelet activation|platelet degranulation|positive regulation of mitotic cell cycle|protein phosphorylation|regulation of epidermal growth factor receptor activity|regulation of multicellular organism growth|regulation of synapse structure and activity|regulation of translation|visual learning	axon|cell surface|coated pit|dendritic shaft|dendritic spine|extracellular region|Golgi apparatus|integral to plasma membrane|platelet alpha granule lumen	acetylcholine receptor binding|DNA binding|heparin binding|identical protein binding|metal ion binding|protein binding|protein binding|PTB domain binding|serine-type endopeptidase inhibitor activity			ovary(1)	1		Breast(209;0.00295)				AATTCCGCAGGGCAGCAACAT	0.478													10	6					0	0	0.013537	0	0
GRIK1	2897	broad.mit.edu	37	21	30971160	30971160	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr21:30971160C>T	uc002yno.1	-	8	1660	c.1196G>A	c.(1195-1197)GGA>GAA	p.G399E	GRIK1_uc002ynn.2_Missense_Mutation_p.G399E|GRIK1_uc011acs.1_Missense_Mutation_p.G399E|GRIK1_uc011act.1_Missense_Mutation_p.G343E|GRIK1_uc010glq.1_Missense_Mutation_p.G257E|GRIK1_uc002ynr.2_Missense_Mutation_p.G399E|uc002ynp.1_Intron	NM_000830	NP_000821	P39086	GRIK1_HUMAN	glutamate receptor, ionotropic, kainate 1	399	Extracellular (Potential).				central nervous system development|synaptic transmission	cell junction|postsynaptic membrane	kainate selective glutamate receptor activity			large_intestine(1)|ovary(1)|skin(1)	3					L-Glutamic Acid(DB00142)|Topiramate(DB00273)	CTTTTCAGTTCCTTCCTCTTT	0.368													22	25					0	0	0.002780	0	0
TIAM1	7074	broad.mit.edu	37	21	32496913	32496913	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr21:32496913G>A	uc002yow.1	-	28	4705	c.4233C>T	c.(4231-4233)TCC>TCT	p.S1411S	TIAM1_uc011adk.1_Silent_p.S1411S|TIAM1_uc011adl.1_Silent_p.S1351S	NM_003253	NP_003244	Q13009	TIAM1_HUMAN	T-cell lymphoma invasion and metastasis 1	1411					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cell-cell junction|cytosol	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			lung(3)|breast(3)|ovary(2)|large_intestine(2)	10						CATATTGCTGGGATGAGGGAA	0.542													18	20					0	0	0.007413	0	0
TIAM1	7074	broad.mit.edu	37	21	32638800	32638800	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr21:32638800C>T	uc002yow.1	-	5	961	c.489G>A	c.(487-489)GCG>GCA	p.A163A	TIAM1_uc011adk.1_Silent_p.A163A|TIAM1_uc011adl.1_Silent_p.A163A|TIAM1_uc002yox.1_Intron	NM_003253	NP_003244	Q13009	TIAM1_HUMAN	T-cell lymphoma invasion and metastasis 1	163					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cell-cell junction|cytosol	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			lung(3)|breast(3)|ovary(2)|large_intestine(2)	10						TCTTAAAGCTCGCCGTCTCCA	0.512													44	30					0	0	0.014410	0	0
C21orf62	56245	broad.mit.edu	37	21	34166294	34166294	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr21:34166294C>T	uc010glz.2	-	4	811	c.439G>A	c.(439-441)GAC>AAC	p.D147N	C21orf49_uc002yqs.2_Intron|C21orf49_uc002yqu.3_Intron|C21orf49_uc002yqt.2_Intron|C21orf62_uc011adt.1_Missense_Mutation_p.D147N|C21orf62_uc011adu.1_Missense_Mutation_p.D147N	NM_001162495	NP_001155967	Q9NYP8	CU062_HUMAN	hypothetical protein LOC56245	147										ovary(1)	1		Myeloproliferative disorder(46;0.0255)				GAGTCACTGTCCCCACCGCTA	0.502													14	16					0	0	0.002450	0	0
IFNAR1	3454	broad.mit.edu	37	21	34715863	34715863	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr21:34715863C>T	uc002yrn.2	+	5	701	c.554C>T	c.(553-555)TCC>TTC	p.S185F	IFNAR1_uc011adv.1_Missense_Mutation_p.S116F	NM_000629	NP_000620	P17181	INAR1_HUMAN	interferon-alpha receptor 1 precursor	185	Fibronectin type-III 1.|Extracellular (Potential).				JAK-STAT cascade|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	integral to plasma membrane	type I interferon receptor activity			central_nervous_system(1)|skin(1)	2					Interferon Alfa-2a, Recombinant(DB00034)|Interferon Alfa-2b, Recombinant(DB00105)|Interferon alfa-n1(DB00011)|Interferon alfa-n3(DB00018)|Interferon alfacon-1(DB00069)|Interferon beta-1b(DB00068)|Peginterferon alfa-2a(DB00008)|Peginterferon alfa-2b(DB00022)	AATATTTATTCCAGACATAAA	0.289													8	26					0	0	0.003080	0	0
CLIC6	54102	broad.mit.edu	37	21	36081660	36081660	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr21:36081660G>A	uc010gmt.1	+	6	1777	c.1777G>A	c.(1777-1779)GAA>AAA	p.E593K	CLIC6_uc002yuf.1_Missense_Mutation_p.E575K	NM_053277	NP_444507	Q96NY7	CLIC6_HUMAN	chloride intracellular channel 6	593	GST C-terminal.					chloride channel complex|cytoplasm|plasma membrane	voltage-gated chloride channel activity			ovary(1)|central_nervous_system(1)	2						TTTAGTTCATGAAAAGAACCT	0.458													9	37					0	0	0.004482	0	0
CLDN14	23562	broad.mit.edu	37	21	37833570	37833570	+	Missense_Mutation	SNP	C	T	T	rs146755542	by1000genomes	TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr21:37833570C>T	uc002yvk.1	-	2	566	c.424G>A	c.(424-426)GAC>AAC	p.D142N	CLDN14_uc002yvn.1_Missense_Mutation_p.D142N|CLDN14_uc002yvo.1_Missense_Mutation_p.D142N|CLDN14_uc002yvl.1_Missense_Mutation_p.D142N|CLDN14_uc002yvm.1_Missense_Mutation_p.D142N	NM_012130	NP_036262	O95500	CLD14_HUMAN	claudin 14	142	Extracellular (Potential).				calcium-independent cell-cell adhesion|protein complex assembly|tight junction assembly	endoplasmic reticulum|integral to membrane|tight junction	identical protein binding|structural molecule activity				0						TGCACCACGTCGTTGGTGGTC	0.627													11	52					0	0	0.008291	0	0
KCNJ6	3763	broad.mit.edu	37	21	39086553	39086553	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr21:39086553C>T	uc011aej.1	-	3	960	c.907G>A	c.(907-909)GAA>AAA	p.E303K	KCNJ6_uc002ywo.2_Missense_Mutation_p.E303K	NM_002240	NP_002231	P48051	IRK6_HUMAN	potassium inwardly-rectifying channel J6	303	Cytoplasmic (By similarity).				synaptic transmission	Golgi apparatus|voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding			skin(1)	1					Halothane(DB01159)	ACCACAATTTCCAGTTCCTCT	0.478													30	37					0	0	0.012213	0	0
SH3BGR	6450	broad.mit.edu	37	21	40847111	40847111	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr21:40847111C>T	uc002yya.2	+	3	525	c.471C>T	c.(469-471)TTC>TTT	p.F157F	SH3BGR_uc002yxz.2_Silent_p.F46F	NM_007341	NP_031367	P55822	SH3BG_HUMAN	SH3-binding domain and glutamic acid-rich	157					protein complex assembly	cytosol	SH3 domain binding|SH3/SH2 adaptor activity				0		all_cancers(19;1.16e-23)|all_epithelial(19;1.22e-20)|Prostate(19;2.55e-06)|Breast(209;0.0133)		STAD - Stomach adenocarcinoma(101;0.00151)		TTTATTCCTTCCTTGGTTTGG	0.378													9	17					0	0	0.008291	0	0
DSCAM	1826	broad.mit.edu	37	21	41452104	41452104	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr21:41452104G>A	uc002yyq.1	-	25	4847	c.4395C>T	c.(4393-4395)ATC>ATT	p.I1465I	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	1465	Fibronectin type-III 5.|Extracellular (Potential).				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				TTGCTTCTATGATTTCACTTA	0.443													48	32					0	0	0.014410	0	0
DSCAM	1826	broad.mit.edu	37	21	41725641	41725641	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr21:41725641C>T	uc002yyq.1	-	5	1137	c.685G>A	c.(685-687)GAT>AAT	p.D229N	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	229	Extracellular (Potential).|Ig-like C2-type 3.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				TCAAACCCATCCAGTATGGAT	0.517													5	4					0	0	0.001168	0	0
RIPK4	54101	broad.mit.edu	37	21	43176852	43176852	+	Missense_Mutation	SNP	A	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr21:43176852A>T	uc002yzn.1	-	2	355	c.307T>A	c.(307-309)TCC>ACC	p.S103T		NM_020639	NP_065690	P57078	RIPK4_HUMAN	ankyrin repeat domain 3	103						cytoplasm|nucleus	ATP binding|protein serine/threonine kinase activity	p.S103F(1)		ovary(2)|central_nervous_system(2)|large_intestine(1)|lung(1)|skin(1)	7						TTTTCCAGGGAGCCCGTCTCC	0.582													7	17					0	0	0.006214	0	0
C2CD2	25966	broad.mit.edu	37	21	43332482	43332482	+	Silent	SNP	C	T	T	rs148517689		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr21:43332482C>T	uc002yzw.2	-	7	1154	c.912G>A	c.(910-912)ACG>ACA	p.T304T	C2CD2_uc002yzu.2_Silent_p.T136T|C2CD2_uc002yzv.2_Silent_p.T149T|C2CD2_uc002yzx.1_Silent_p.T149T	NM_015500	NP_056315	Q9Y426	CU025_HUMAN	C2 calcium-dependent domain containing 2 isoform	304	C2.					cytosol|extracellular region|nucleus				ovary(1)	1						GAGTGTTTTTCGTCAGGGTGC	0.542													10	6					0	0	0.001855	0	0
TMPRSS3	64699	broad.mit.edu	37	21	43795855	43795855	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr21:43795855G>A	uc002zbb.2	-	12	1518	c.1317C>T	c.(1315-1317)TCC>TCT	p.S439S	TMPRSS3_uc002zay.2_Silent_p.S196S|TMPRSS3_uc002zaz.2_Silent_p.S312S|TMPRSS3_uc002zba.2_Silent_p.S312S|TMPRSS3_uc002zbc.2_Silent_p.S438S	NM_024022	NP_076927	P57727	TMPS3_HUMAN	transmembrane protease, serine 3 isoform 1	439	Peptidase S1.|Extracellular (Potential).				cellular sodium ion homeostasis|proteolysis	endoplasmic reticulum membrane|integral to membrane	scavenger receptor activity|serine-type endopeptidase activity|sodium channel regulator activity			ovary(2)|breast(1)	3						AGTCCAGGAAGGAGGTGACAC	0.597													38	36					0	0	0.004878	0	0
SLC37A1	54020	broad.mit.edu	37	21	43988541	43988541	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr21:43988541C>T	uc002zbi.2	+	18	1828	c.1416C>T	c.(1414-1416)GGC>GGT	p.G472G	SLC37A1_uc002zbj.2_Silent_p.G472G	NM_018964	NP_061837	P57057	GLPT_HUMAN	solute carrier family 37 member 1	472	Helical; (Potential).				carbohydrate transport|transmembrane transport	integral to membrane					0						ACGGGACGGGCTCTGTAGGTG	0.537													6	6					0	0	0.003080	0	0
SIK1	150094	broad.mit.edu	37	21	44836679	44836679	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr21:44836679G>A	uc002zdf.2	-	14	2422	c.2295C>T	c.(2293-2295)GAC>GAT	p.D765D		NM_173354	NP_775490	P57059	SIK1_HUMAN	salt-inducible kinase 1	765					anoikis|cell cycle|cell differentiation|intracellular protein kinase cascade|multicellular organismal development|regulation of cell differentiation|regulation of mitotic cell cycle	nucleus	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			lung(2)|testis(2)|ovary(1)|central_nervous_system(1)|skin(1)	7						CCATCTCACAGTCCCCCTGCA	0.672													9	5					0	0	0.004482	0	0
C21orf29	54084	broad.mit.edu	37	21	45987759	45987759	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr21:45987759G>A	uc002zfe.1	-	2	279	c.213C>T	c.(211-213)TTC>TTT	p.F71F	C21orf29_uc010gpv.1_Silent_p.F3F	NM_144991	NP_659428	Q8WU66	TSEAR_HUMAN	chromosome 21 open reading frame 29 precursor	71					cell adhesion	extracellular region	structural molecule activity				0						TGGATGCTGGGAAGCTCATGG	0.557													9	50					0	0	0.006214	0	0
KRTAP10-6	386674	broad.mit.edu	37	21	46012258	46012258	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr21:46012258G>A	uc002zfm.2	-	1	129	c.108C>T	c.(106-108)GAC>GAT	p.D36D	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198688	NP_941961	P60371	KR106_HUMAN	keratin associated protein 10-6	36						keratin filament					0						TCTCTGGGCAGTCGTCCACCT	0.687													6	9					0	0	0.001984	0	0
COL18A1	80781	broad.mit.edu	37	21	46893817	46893817	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr21:46893817C>T	uc011afs.1	+	3	1926	c.1905C>T	c.(1903-1905)ATC>ATT	p.I635I	COL18A1_uc002zhg.2_Silent_p.I220I|COL18A1_uc002zhi.2_Silent_p.I400I	NM_130444	NP_569711	P39060	COIA1_HUMAN	alpha 1 type XVIII collagen isoform 3 precursor	635	TSP N-terminal.				cell adhesion|negative regulation of cell proliferation|organ morphogenesis|visual perception	collagen|extracellular space	extracellular matrix structural constituent|metal ion binding|protein binding			central_nervous_system(1)	1				Colorectal(79;0.0157)|READ - Rectum adenocarcinoma(84;0.0929)		AGGGGGTGATCGCTGAGCTGA	0.637													4	3					0	0	0.000602	0	0
PRMT2	3275	broad.mit.edu	37	21	48068379	48068379	+	Silent	SNP	T	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr21:48068379T>C	uc002zjx.2	+	6	651	c.337T>C	c.(337-339)TTG>CTG	p.L113L	PRMT2_uc002zjw.2_Silent_p.L113L|PRMT2_uc002zjy.2_Silent_p.L113L|PRMT2_uc010gqm.2_Silent_p.L113L|PRMT2_uc011aga.1_Silent_p.L113L|PRMT2_uc011agb.1_Silent_p.L113L|PRMT2_uc011agc.1_Silent_p.L113L|PRMT2_uc002zjz.1_5'UTR	NM_206962	NP_996845	P55345	ANM2_HUMAN	HMT1 hnRNP methyltransferase-like 1	113	Interaction with RB1 (By similarity).				developmental cell growth|induction of apoptosis|negative regulation of G1/S transition of mitotic cell cycle|negative regulation of NF-kappaB transcription factor activity|negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of androgen receptor signaling pathway	cytosol|nucleus	androgen receptor binding|estrogen receptor binding|histone-arginine N-methyltransferase activity|peroxisome proliferator activated receptor binding|progesterone receptor binding|protein homodimerization activity|retinoic acid receptor binding|signal transducer activity|thyroid hormone receptor binding|transcription coactivator activity			ovary(1)	1	Breast(49;0.247)	Lung NSC(3;0.245)		Epithelial(3;1.03e-07)|OV - Ovarian serous cystadenocarcinoma(3;4.68e-07)|all cancers(3;7.48e-07)|Colorectal(79;0.167)|Lung(125;0.203)|LUSC - Lung squamous cell carcinoma(216;0.23)|READ - Rectum adenocarcinoma(84;0.248)		GAAACTCCACTTGGAGATGTT	0.502													28	24					0	0	0.004656	0	0
POTEH	23784	broad.mit.edu	37	22	16279198	16279199	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:16279198_16279199CC>AT	uc010gqp.2	-	4	1076_1077	c.1024_1025GG>AT	c.(1024-1026)GGA>ATA	p.G342I	POTEH_uc002zlg.1_RNA|POTEH_uc002zlh.1_Missense_Mutation_p.G61I|POTEH_uc002zlj.1_Missense_Mutation_p.G177I	NM_001136213	NP_001129685	Q6S545	POTEH_HUMAN	ANKRD26-like family C, member 3	342	ANK 6.									skin(1)	1						ACTATACCTTCCATATCTATCC	0.317													16	204					0	0	0.004672	0	0
POTEH	23784	broad.mit.edu	37	22	16279248	16279248	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:16279248C>T	uc010gqp.2	-	4	1027	c.975G>A	c.(973-975)GTG>GTA	p.V325V	POTEH_uc002zlg.1_RNA|POTEH_uc002zlh.1_Silent_p.V44V|POTEH_uc002zlj.1_Silent_p.V160V	NM_001136213	NP_001129685	Q6S545	POTEH_HUMAN	ANKRD26-like family C, member 3	325	ANK 5.									skin(1)	1						TTAAAAATTTCACCACTTGCT	0.328													35	370					0	0	0.009718	0	0
CCT8L2	150160	broad.mit.edu	37	22	17072779	17072779	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:17072779C>T	uc002zlp.1	-	1	922	c.662G>A	c.(661-663)GGG>GAG	p.G221E		NM_014406	NP_055221	Q96SF2	TCPQM_HUMAN	T-complex protein 1	221					cellular protein metabolic process	cytoplasm	anion channel activity|ATP binding|calcium-activated potassium channel activity			ovary(1)	1	all_hematologic(4;0.00567)|Acute lymphoblastic leukemia(84;0.0977)	all_epithelial(15;0.0157)|Lung NSC(13;0.147)|all_lung(157;0.175)				TATTGCTAACCCCGGGAGGAG	0.592													20	77					0	0	0.014323	0	0
CCT8L2	150160	broad.mit.edu	37	22	17072847	17072847	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:17072847G>A	uc002zlp.1	-	1	854	c.594C>T	c.(592-594)TTC>TTT	p.F198F		NM_014406	NP_055221	Q96SF2	TCPQM_HUMAN	T-complex protein 1	198					cellular protein metabolic process	cytoplasm	anion channel activity|ATP binding|calcium-activated potassium channel activity			ovary(1)	1	all_hematologic(4;0.00567)|Acute lymphoblastic leukemia(84;0.0977)	all_epithelial(15;0.0157)|Lung NSC(13;0.147)|all_lung(157;0.175)				GCTCAGGCTTGAAGCTGCCGT	0.602													39	48					0	0	0.006230	0	0
XKR3	150165	broad.mit.edu	37	22	17288676	17288676	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:17288676C>T	uc002zlv.2	-	2	386	c.288G>A	c.(286-288)AAG>AAA	p.K96K	XKR3_uc011agf.1_Silent_p.K96K	NM_175878	NP_787074	Q5GH77	XKR3_HUMAN	X Kell blood group precursor-related family,	96						integral to membrane|plasma membrane				large_intestine(1)|ovary(1)|skin(1)	3	all_hematologic(4;0.00567)|Acute lymphoblastic leukemia(84;0.0977)	all_epithelial(15;0.0157)|Lung NSC(13;0.147)|all_lung(157;0.175)				GTAATGCAGCCTTATTTCTCC	0.348													12	48					0	0	0.002450	0	0
XKR3	150165	broad.mit.edu	37	22	17288700	17288700	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:17288700G>A	uc002zlv.2	-	2	362	c.264C>T	c.(262-264)TTC>TTT	p.F88F	XKR3_uc011agf.1_Silent_p.F88F	NM_175878	NP_787074	Q5GH77	XKR3_HUMAN	X Kell blood group precursor-related family,	88	Helical; (Potential).					integral to membrane|plasma membrane				large_intestine(1)|ovary(1)|skin(1)	3	all_hematologic(4;0.00567)|Acute lymphoblastic leukemia(84;0.0977)	all_epithelial(15;0.0157)|Lung NSC(13;0.147)|all_lung(157;0.175)				AGTCTTTGTTGAAAAACATCA	0.338													14	44					0	0	0.003163	0	0
XKR3	150165	broad.mit.edu	37	22	17288907	17288907	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:17288907C>T	uc002zlv.2	-	2	155	c.57G>A	c.(55-57)TCG>TCA	p.S19S	XKR3_uc011agf.1_Silent_p.S19S	NM_175878	NP_787074	Q5GH77	XKR3_HUMAN	X Kell blood group precursor-related family,	19						integral to membrane|plasma membrane				large_intestine(1)|ovary(1)|skin(1)	3	all_hematologic(4;0.00567)|Acute lymphoblastic leukemia(84;0.0977)	all_epithelial(15;0.0157)|Lung NSC(13;0.147)|all_lung(157;0.175)				TTTCTTCTTTCGAAGATGAAA	0.423													17	92					0	0	0.008871	0	0
GAB4	128954	broad.mit.edu	37	22	17445659	17445659	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:17445659G>A	uc002zlw.2	-	8	1581	c.1473C>T	c.(1471-1473)TTC>TTT	p.F491F		NM_001037814	NP_001032903	Q2WGN9	GAB4_HUMAN	GRB2-associated binding protein family, member	491										large_intestine(1)|ovary(1)	2		all_epithelial(15;0.112)|Lung NSC(13;0.248)				GACTCACCGGGAAAAGATACC	0.562													12	25					0	0	0.010729	0	0
CECR2	27443	broad.mit.edu	37	22	18020357	18020357	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:18020357C>T	uc010gqw.1	+	13	1812	c.1686C>T	c.(1684-1686)CCC>CCT	p.P562P	CECR2_uc010gqv.1_Silent_p.P421P|CECR2_uc002zml.2_Silent_p.P421P	NM_031413	NP_113601	Q9BXF3	CECR2_HUMAN	cat eye syndrome chromosome region, candidate 2	604					chromatin modification|cytokinesis|cytoskeleton organization|DNA fragmentation involved in apoptotic nuclear change|vesicle-mediated transport		protein binding			ovary(1)|skin(1)	2		all_epithelial(15;0.139)		Lung(27;0.146)		GCCGAGCGCCCTCTTCTGGGG	0.627													16	38					0	0	0.008871	0	0
MICAL3	57553	broad.mit.edu	37	22	18300928	18300929	+	Missense_Mutation	DNP	TC	CT	CT			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:18300928_18300929TC>CT	uc002zng.3	-	26	4851_4852	c.4498_4499GA>AG	c.(4498-4500)GAG>AGG	p.E1500R	MICAL3_uc011agl.1_Missense_Mutation_p.E1416R|MICAL3_uc010gre.1_5'Flank	NM_015241	NP_056056	Q7RTP6	MICA3_HUMAN	microtubule associated monoxygenase, calponin	1500	Pro-rich.					cytoplasm|cytoskeleton	monooxygenase activity|zinc ion binding				0		all_epithelial(15;0.198)		Lung(27;0.0427)		CTGAGCAGGCTCCCGGGGGGGC	0.668													4	12					0	0	0.004672	0	0
DGCR14	8220	broad.mit.edu	37	22	19121774	19121774	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:19121774G>A	uc002zou.2	-	10	1403	c.1366C>T	c.(1366-1368)CCG>TCG	p.P456S	DGCR14_uc002zot.2_Missense_Mutation_p.P377S|DGCR14_uc002zov.2_RNA	NM_022719	NP_073210	Q96DF8	DGC14_HUMAN	DiGeorge syndrome critical region protein 14	456					nervous system development	catalytic step 2 spliceosome				ovary(1)	1	Colorectal(54;0.0993)					ATGGAGGCCGGGTCCTGTGTG	0.657													13	25					0	0	0.001855	0	0
DGCR14	8220	broad.mit.edu	37	22	19125737	19125737	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:19125737G>A	uc002zou.2	-	7	953	c.916C>T	c.(916-918)CCT>TCT	p.P306S	DGCR14_uc002zot.2_Missense_Mutation_p.P227S|DGCR14_uc002zov.2_Intron	NM_022719	NP_073210	Q96DF8	DGC14_HUMAN	DiGeorge syndrome critical region protein 14	306					nervous system development	catalytic step 2 spliceosome				ovary(1)	1	Colorectal(54;0.0993)					CCAGGGGCAGGGGAAGGAGTG	0.632													9	26					0	0	0.006214	0	0
CLTCL1	8218	broad.mit.edu	37	22	19197878	19197878	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:19197878G>A	uc002zpb.2	-	20	3282	c.3207C>T	c.(3205-3207)TTC>TTT	p.F1069F	CLTCL1_uc011agv.1_Silent_p.F1069F|CLTCL1_uc011agw.1_Silent_p.F1069F|CLTCL1_uc011agt.1_5'Flank|CLTCL1_uc011agu.1_5'Flank|CLTCL1_uc010grm.1_5'Flank|CLTCL1_uc002zpe.2_Silent_p.F29F|CLTCL1_uc002zpd.1_Silent_p.F29F	NM_007098	NP_009029	P53675	CLH2_HUMAN	clathrin, heavy polypeptide-like 1 isoform 1	1069	Proximal segment.|Heavy chain arm.				anatomical structure morphogenesis|intracellular protein transport|mitosis|positive regulation of glucose import|receptor-mediated endocytosis	clathrin coat of coated pit|clathrin coat of trans-Golgi network vesicle|spindle|trans-Golgi network	protein binding|signal transducer activity|structural molecule activity			ovary(4)|central_nervous_system(1)	5	Colorectal(54;0.0993)					GGAAAACGGTGAAGGCCTCCT	0.552			T	?	ALCL								21	56					0	0	0.003954	0	0
CLTCL1	8218	broad.mit.edu	37	22	19203732	19203732	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:19203732G>A	uc002zpb.2	-	19	3029	c.2954C>T	c.(2953-2955)CCT>CTT	p.P985L	CLTCL1_uc011agv.1_Missense_Mutation_p.P985L|CLTCL1_uc011agw.1_Missense_Mutation_p.P985L|CLTCL1_uc002zpe.2_5'Flank|CLTCL1_uc002zpd.1_5'Flank	NM_007098	NP_009029	P53675	CLH2_HUMAN	clathrin, heavy polypeptide-like 1 isoform 1	985	Proximal segment.|Heavy chain arm.				anatomical structure morphogenesis|intracellular protein transport|mitosis|positive regulation of glucose import|receptor-mediated endocytosis	clathrin coat of coated pit|clathrin coat of trans-Golgi network vesicle|spindle|trans-Golgi network	protein binding|signal transducer activity|structural molecule activity			ovary(4)|central_nervous_system(1)	5	Colorectal(54;0.0993)					AATCTCTTCAGGATCCCGTGT	0.403			T	?	ALCL								19	30					0	0	0.008871	0	0
RIMBP3	85376	broad.mit.edu	37	22	20457175	20457175	+	Missense_Mutation	SNP	T	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:20457175T>A	uc002zsd.3	-	1	4612	c.4127A>T	c.(4126-4128)CAT>CTT	p.H1376L		NM_015672	NP_056487			RIMS binding protein 3												0	Colorectal(54;0.0993)|Melanoma(16;0.165)		LUSC - Lung squamous cell carcinoma(15;0.0405)|Lung(15;0.224)			CAAAACGTTATGGAAGTCAGA	0.582													13	79					0	0	0.002450	0	0
RIMBP3	85376	broad.mit.edu	37	22	20458093	20458093	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:20458093C>T	uc002zsd.3	-	1	3694	c.3209G>A	c.(3208-3210)GGA>GAA	p.G1070E		NM_015672	NP_056487			RIMS binding protein 3												0	Colorectal(54;0.0993)|Melanoma(16;0.165)		LUSC - Lung squamous cell carcinoma(15;0.0405)|Lung(15;0.224)			GGACATAGTTCCCCAATACAC	0.662													5	75					0	0	0.001984	0	0
PPM1F	9647	broad.mit.edu	37	22	22285612	22285612	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:22285612G>A	uc002zvp.1	-	6	913	c.799C>T	c.(799-801)CTG>TTG	p.L267L	PPM1F_uc011aik.1_Silent_p.L163L|PPM1F_uc002zvq.2_Silent_p.L267L	NM_014634	NP_055449	P49593	PPM1F_HUMAN	protein phosphatase 1F	267					apoptosis|protein dephosphorylation	protein serine/threonine phosphatase complex	metal ion binding|protein serine/threonine phosphatase activity			ovary(2)|large_intestine(1)|breast(1)|kidney(1)	5	Colorectal(54;0.105)			READ - Rectum adenocarcinoma(21;0.155)		GCGACGTGCAGGGTCGCTCCT	0.473													24	43					0	0	0.005443	0	0
LOC96610	96610	broad.mit.edu	37	22	22786696	22786696	+	RNA	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:22786696C>T	uc011aim.1	+	67		c.6879C>T								Parts of antibodies, mostly variable regions.												0						CTGACCGATTCTCTGGCTCCA	0.532													32	71					0	0	0.009535	0	0
BCR	613	broad.mit.edu	37	22	23603604	23603604	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:23603604C>T	uc002zww.2	+	4	2225	c.1629C>T	c.(1627-1629)ATC>ATT	p.I543I	BCR_uc002zwx.2_Silent_p.I543I|BCR_uc011aiy.1_Silent_p.I132I|BCR_uc010gtx.1_Silent_p.I46I|uc010gty.2_5'Flank	NM_004327	NP_004318	P11274	BCR_HUMAN	breakpoint cluster region isoform 1	543	DH.				regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	ATP binding|GTPase activator activity|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity		BCR/JAK2(6)	haematopoietic_and_lymphoid_tissue(6)|central_nervous_system(3)|urinary_tract(1)|lung(1)|skin(1)	12						GTCAGCAGATCGAGACCATCT	0.587			T	ABL1| FGFR1|JAK2 	CML|ALL|AML								46	90					0	0	0.013114	0	0
IGLL1	3543	broad.mit.edu	37	22	23915751	23915751	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:23915751G>A	uc002zxd.2	-	3	462	c.344C>T	c.(343-345)TCG>TTG	p.S115L	IGLL1_uc002zxe.2_Silent_p.L76L	NM_020070	NP_064455	P15814	IGLL1_HUMAN	immunoglobulin lambda-like polypeptide 1 isoform	115	C region (By similarity to lambda light- chain).|Ig-like C1-type.				immune response	extracellular region|membrane					0						CAGAGTGACCGAGGGGGTGGC	0.577													8	34					0	0	0.003080	0	0
ZNF70	7621	broad.mit.edu	37	22	24086478	24086478	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:24086478G>A	uc002zxs.2	-	2	1311	c.850C>T	c.(850-852)CTC>TTC	p.L284F	ZNF70_uc002zxr.1_5'Flank	NM_021916	NP_068735	Q9UC06	ZNF70_HUMAN	zinc finger protein 70	284	C2H2-type 6.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding	p.L284V(1)		ovary(2)	2						TTCCCACAGAGATCGCACTCG	0.517													15	43					0	0	0.004007	0	0
UPB1	51733	broad.mit.edu	37	22	24911324	24911324	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:24911324G>A	uc003aaf.2	+	6	898	c.777G>A	c.(775-777)ACG>ACA	p.T259T	UPB1_uc003aae.2_Silent_p.T191T|UPB1_uc011ajt.1_Silent_p.T259T	NM_016327	NP_057411	Q9UBR1	BUP1_HUMAN	beta-ureidopropionase	259	CN hydrolase.				pyrimidine base metabolic process|pyrimidine nucleoside catabolic process	cytosol	beta-ureidopropionase activity|metal ion binding			ovary(2)	2	Colorectal(2;0.0339)					CCTCGGCCACGATAGGAGCAC	0.612													17	39					0	0	0.006122	0	0
GGT1	2678	broad.mit.edu	37	22	25010854	25010854	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:25010854C>T	uc003aan.1	+	6	763	c.276C>T	c.(274-276)ACC>ACT	p.T92T	GGT1_uc003aas.1_Silent_p.T92T|GGT1_uc003aat.1_Silent_p.T92T|GGT1_uc003aau.1_Silent_p.T92T|GGT1_uc003aav.1_Silent_p.T92T|GGT1_uc003aaw.1_Silent_p.T92T|GGT1_uc003aax.1_Silent_p.T92T	NM_013430	NP_038347	P19440	GGT1_HUMAN	gamma-glutamyltransferase 1 precursor	92	Extracellular (Potential).				glutathione biosynthetic process	integral to membrane	acyltransferase activity|gamma-glutamyltransferase activity|protein binding				0					Glutathione(DB00143)	TCTTCCTCACCATCTACAACA	0.657													12	43					0	0	0.002450	0	0
SGSM1	129049	broad.mit.edu	37	22	25264765	25264765	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:25264765G>A	uc003abg.2	+	12	1391	c.1234G>A	c.(1234-1236)GAT>AAT	p.D412N	SGSM1_uc003abh.2_Missense_Mutation_p.D412N|SGSM1_uc010guu.1_Missense_Mutation_p.D412N|SGSM1_uc003abj.2_Missense_Mutation_p.D412N|SGSM1_uc003abi.1_Missense_Mutation_p.D387N	NM_001039948	NP_001035037	Q2NKQ1	SGSM1_HUMAN	RUN and TBC1 domain containing 2 isoform 1	412						Golgi apparatus	Rab GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)	5						CAAAGATGATGATGAGGCCAC	0.537													36	61					0	0	0.004289	0	0
SGSM1	129049	broad.mit.edu	37	22	25270515	25270516	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:25270515_25270516CC>TT	uc003abg.2	+	13	1582_1583	c.1425_1426CC>TT	c.(1423-1428)CTCCCC>CTTTCC	p.P476S	SGSM1_uc003abh.2_Missense_Mutation_p.P476S|SGSM1_uc010guu.1_Intron|SGSM1_uc003abj.2_Intron|SGSM1_uc003abi.1_Intron	NM_001039948	NP_001035037	Q2NKQ1	SGSM1_HUMAN	RUN and TBC1 domain containing 2 isoform 1	476						Golgi apparatus	Rab GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)	5						ACACTACTCTCCCCACGCCAAG	0.634													6	10					0	0	0.004672	0	0
SGSM1	129049	broad.mit.edu	37	22	25294145	25294145	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:25294145G>A	uc003abg.2	+	20	2551	c.2394G>A	c.(2392-2394)CGG>CGA	p.R798R	SGSM1_uc003abh.2_Silent_p.R737R|SGSM1_uc010guu.1_Silent_p.R743R|SGSM1_uc003abj.2_Silent_p.R682R|SGSM1_uc003abi.1_Silent_p.R718R	NM_001039948	NP_001035037	Q2NKQ1	SGSM1_HUMAN	RUN and TBC1 domain containing 2 isoform 1	798	Rab-GAP TBC.					Golgi apparatus	Rab GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)	5						ACGCCCAGCGGAACACCCCCA	0.627													9	46					0	0	0.010729	0	0
MYO18B	84700	broad.mit.edu	37	22	26164822	26164822	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:26164822C>T	uc003abz.1	+	4	1189	c.939C>T	c.(937-939)ATC>ATT	p.I313I	MYO18B_uc003aca.1_Silent_p.I194I|MYO18B_uc010guy.1_Silent_p.I194I|MYO18B_uc010guz.1_Silent_p.I194I|MYO18B_uc011aka.1_5'UTR|MYO18B_uc011akb.1_5'Flank	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	313						nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						GGCCCCAAATCCCTGGGAGAA	0.532													5	13					0	0	0.001168	0	0
MYO18B	84700	broad.mit.edu	37	22	26164826	26164826	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:26164826G>A	uc003abz.1	+	4	1193	c.943G>A	c.(943-945)GGG>AGG	p.G315R	MYO18B_uc003aca.1_Missense_Mutation_p.G196R|MYO18B_uc010guy.1_Missense_Mutation_p.G196R|MYO18B_uc010guz.1_Missense_Mutation_p.G196R|MYO18B_uc011aka.1_5'UTR|MYO18B_uc011akb.1_5'Flank	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	315						nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						CCAAATCCCTGGGAGAAAGTG	0.532													5	13					0	0	0.001168	0	0
MYO18B	84700	broad.mit.edu	37	22	26194048	26194048	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:26194048G>A	uc003abz.1	+	12	2755	c.2505G>A	c.(2503-2505)GCG>GCA	p.A835A	MYO18B_uc003aca.1_Silent_p.A716A|MYO18B_uc010guy.1_Silent_p.A716A|MYO18B_uc010guz.1_Silent_p.A716A|MYO18B_uc011aka.1_Intron|MYO18B_uc011akb.1_Silent_p.A348A	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	835	Myosin head-like.		A -> G (in a lung squamous cell carcinoma sample; somatic mutation).			nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						ACCTGGGTGCGGCGGGGGCCT	0.662													11	12					0	0	0.010729	0	0
MYO18B	84700	broad.mit.edu	37	22	26343750	26343750	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:26343750G>A	uc003abz.1	+	36	5954	c.5704G>A	c.(5704-5706)GAC>AAC	p.D1902N	MYO18B_uc003aca.1_Missense_Mutation_p.D1783N|MYO18B_uc010guy.1_Missense_Mutation_p.D1784N|MYO18B_uc010guz.1_Missense_Mutation_p.D1782N|MYO18B_uc011aka.1_Missense_Mutation_p.D1056N|MYO18B_uc011akb.1_Missense_Mutation_p.D1415N	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	1902	Tail.|Potential.					nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						GGACCAGGATGACCTGAATGA	0.562													14	23					0	0	0.004007	0	0
MYO18B	84700	broad.mit.edu	37	22	26422876	26422876	+	Missense_Mutation	SNP	A	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:26422876A>C	uc003abz.1	+	43	7186	c.6936A>C	c.(6934-6936)GAA>GAC	p.E2312D	MYO18B_uc003aca.1_Missense_Mutation_p.E2193D|MYO18B_uc010guy.1_Missense_Mutation_p.E2194D|MYO18B_uc010guz.1_Missense_Mutation_p.E2192D|MYO18B_uc011aka.1_Missense_Mutation_p.E1466D|MYO18B_uc011akb.1_Missense_Mutation_p.E1825D|MYO18B_uc010gva.1_Missense_Mutation_p.E295D|MYO18B_uc010gvb.1_RNA	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	2312						nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						CACCCCTGGAAATCGAAGGGG	0.587													3	30					0	0	0.004672	0	0
MYO18B	84700	broad.mit.edu	37	22	26423569	26423569	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:26423569C>T	uc003abz.1	+	43	7879	c.7629C>T	c.(7627-7629)CCC>CCT	p.P2543P	MYO18B_uc003aca.1_Silent_p.P2424P|MYO18B_uc010guy.1_Silent_p.P2425P|MYO18B_uc010guz.1_Silent_p.P2423P|MYO18B_uc011aka.1_Silent_p.P1697P|MYO18B_uc011akb.1_Silent_p.P2056P|MYO18B_uc010gva.1_Silent_p.P526P|MYO18B_uc010gvb.1_RNA	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	2543						nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						GAACGTCCCCCGAGCGGAGAG	0.552													11	18					0	0	0.013537	0	0
SEZ6L	23544	broad.mit.edu	37	22	26688857	26688857	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:26688857C>T	uc003acb.2	+	2	736	c.580C>T	c.(580-582)CCT>TCT	p.P194S	SEZ6L_uc003acc.2_Missense_Mutation_p.P194S|SEZ6L_uc011akc.1_Missense_Mutation_p.P194S|SEZ6L_uc003acd.2_Missense_Mutation_p.P194S|SEZ6L_uc011akd.1_Missense_Mutation_p.P194S|SEZ6L_uc003ace.2_Missense_Mutation_p.P194S|SEZ6L_uc003acf.1_5'UTR|SEZ6L_uc010gvc.1_5'UTR	NM_021115	NP_066938	Q9BYH1	SE6L1_HUMAN	seizure related 6 homolog (mouse)-like	194	Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane				ovary(4)|central_nervous_system(1)|pancreas(1)	6						GAGTGCGGTCCCTACAACACC	0.667													19	70					0	0	0.007413	0	0
SEZ6L	23544	broad.mit.edu	37	22	26688885	26688885	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:26688885C>T	uc003acb.2	+	2	764	c.608C>T	c.(607-609)TCC>TTC	p.S203F	SEZ6L_uc003acc.2_Missense_Mutation_p.S203F|SEZ6L_uc011akc.1_Missense_Mutation_p.S203F|SEZ6L_uc003acd.2_Missense_Mutation_p.S203F|SEZ6L_uc011akd.1_Missense_Mutation_p.S203F|SEZ6L_uc003ace.2_Missense_Mutation_p.S203F|SEZ6L_uc003acf.1_5'UTR|SEZ6L_uc010gvc.1_5'UTR	NM_021115	NP_066938	Q9BYH1	SE6L1_HUMAN	seizure related 6 homolog (mouse)-like	203	Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane				ovary(4)|central_nervous_system(1)|pancreas(1)	6						CTGCAAATCTCCCCCTTCACT	0.667													16	81					0	0	0.006122	0	0
SEZ6L	23544	broad.mit.edu	37	22	26706748	26706748	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:26706748G>A	uc003acb.2	+	7	1783	c.1627G>A	c.(1627-1629)GAG>AAG	p.E543K	SEZ6L_uc003acc.2_Missense_Mutation_p.E543K|SEZ6L_uc011akc.1_Missense_Mutation_p.E543K|SEZ6L_uc003acd.2_Missense_Mutation_p.E543K|SEZ6L_uc011akd.1_Missense_Mutation_p.E543K|SEZ6L_uc003ace.2_Missense_Mutation_p.E543K|SEZ6L_uc003acf.1_Missense_Mutation_p.E316K|SEZ6L_uc010gvc.1_Missense_Mutation_p.E316K	NM_021115	NP_066938	Q9BYH1	SE6L1_HUMAN	seizure related 6 homolog (mouse)-like	543	CUB 2.|Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane				ovary(4)|central_nervous_system(1)|pancreas(1)	6						CATCCGCATCGAGTTCACGTC	0.597													26	89					0	0	0.012213	0	0
HPS4	89781	broad.mit.edu	37	22	26860329	26860329	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:26860329T>C	uc003acl.2	-	11	1926	c.1267A>G	c.(1267-1269)AGC>GGC	p.S423G	HPS4_uc003aci.2_Missense_Mutation_p.S418G|HPS4_uc003acj.2_Missense_Mutation_p.S287G|HPS4_uc003ack.2_Missense_Mutation_p.S214G|HPS4_uc003acn.2_Missense_Mutation_p.S269G|HPS4_uc010gvd.1_Missense_Mutation_p.S441G|HPS4_uc003ach.2_Missense_Mutation_p.S158G	NM_022081	NP_071364	Q9NQG7	HPS4_HUMAN	light ear protein isoform a	423					lysosome organization|positive regulation of eye pigmentation|protein stabilization|protein targeting	lysosome|melanosome|membrane fraction|platelet dense granule	protein homodimerization activity				0						CGCAAGCTGCTGATGGCTGTG	0.617									Hermansky-Pudlak_syndrome				28	73					0	0	0.005443	0	0
HSCB	150274	broad.mit.edu	37	22	29139878	29139878	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:29139878C>T	uc003aea.2	+	2	286	c.245C>T	c.(244-246)TCC>TTC	p.S82F	CHEK2_uc003adt.1_5'Flank|CHEK2_uc003adu.1_5'Flank|CHEK2_uc003adv.1_5'Flank|CHEK2_uc003adw.1_5'Flank|CHEK2_uc003adx.1_5'Flank|CHEK2_uc003ady.1_5'Flank|CHEK2_uc003adz.1_5'Flank	NM_172002	NP_741999	Q8IWL3	HSC20_HUMAN	J-type co-chaperone HSC20 precursor	82	J.				iron-sulfur cluster assembly|protein folding	mitochondrion	chaperone binding|heat shock protein binding|metal ion binding			kidney(1)	1						AGCAACCGTTCCTTCAGAGTT	0.413													25	52					0	0	0.005443	0	0
ZNRF3	84133	broad.mit.edu	37	22	29446881	29446881	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:29446881C>T	uc003aeg.2	+	8	2577	c.2412C>T	c.(2410-2412)TTC>TTT	p.F804F	ZNRF3_uc003aeh.1_Silent_p.F804F	NM_032173	NP_115549	Q9ULT6	ZNRF3_HUMAN	zinc and ring finger 3	904	Cytoplasmic (Potential).					integral to membrane	zinc ion binding			ovary(1)	1						GGGCCAACTTCCCTAGTGCCC	0.642													6	16					0	0	0.001168	0	0
RHBDD3	25807	broad.mit.edu	37	22	29656822	29656822	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:29656822G>A	uc003aeq.1	-	5	936	c.564C>T	c.(562-564)CCC>CCT	p.P188P	RHBDD3_uc003aer.1_RNA	NM_012265	NP_036397	Q9Y3P4	RHBD3_HUMAN	rhomboid domain containing 3	188						integral to membrane	serine-type endopeptidase activity			ovary(1)	1						GTCGCTCTGAGGGTTCCAGCC	0.701													9	8					0	0	0.010729	0	0
EWSR1	2130	broad.mit.edu	37	22	29693828	29693828	+	Missense_Mutation	SNP	C	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:29693828C>G	uc003aet.2	+	13	1634	c.1306C>G	c.(1306-1308)CAA>GAA	p.Q436E	EWSR1_uc003aev.2_Missense_Mutation_p.Q441E|EWSR1_uc003aew.2_Missense_Mutation_p.Q380E|EWSR1_uc003aex.2_Missense_Mutation_p.Q435E|EWSR1_uc003aey.2_Missense_Mutation_p.Q231E|EWSR1_uc003aez.2_Missense_Mutation_p.Q97E	NM_005243	NP_005234	Q01844	EWS_HUMAN	Ewing sarcoma breakpoint region 1 isoform 2	436	RRM.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	calmodulin binding|nucleotide binding|RNA binding|zinc ion binding		EWSR1/FLI1(2266)|EWSR1/ATF1(323)|EWSR1/WT1(231)|EWSR1/ERG(162)|EWSR1/NR4A3(140)|EWSR1/DDIT3(43)|EWSR1/CREB1(42)|EWSR1/FEV(10)|EWSR1/POU5F1(10)|EWSR1/ETV1(7)|EWSR1/ETV4(6)|EWSR1/ZNF384(4)|EWSR1/PBX1(3)|EWSR1/SP3(3)|EWSR1/PATZ1(2)	bone(2526)|soft_tissue(702)|skin(8)|autonomic_ganglia(4)|haematopoietic_and_lymphoid_tissue(4)|salivary_gland(2)|central_nervous_system(2)|NS(2)|pancreas(2)|lung(1)|ovary(1)	3254						GAAAGATTTTCAAGGGAGCAA	0.512			T	FLI1|ERG|ZNF278|NR4A3|FEV|ATF1|ETV1|ETV4|WT1|ZNF384|CREB1|POU5F1| PBX1	Ewing sarcoma| desmoplastic small round cell tumor |ALL|clear cell sarcoma|sarcoma|myoepithelioma								8	56					0	0	0.003080	0	0
NEFH	4744	broad.mit.edu	37	22	29886023	29886024	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:29886023_29886024GG>AA	uc003afo.2	+	4	2465_2466	c.2394_2395GG>AA	c.(2392-2397)AAGGCG>AAAACG	p.A799T	NEFH_uc003afp.2_5'UTR	NM_021076	NP_066554	P12036	NFH_HUMAN	neurofilament, heavy polypeptide 200kDa	805	30 X 6 AA repeats of K-S-P-[AEPV]-[EAK]- [AEVK].|Tail.|29.				cell death|nervous system development	neurofilament					0						CCCCAGAGAAGGCGAAATCTCC	0.554													15	15					0	0	0.004672	0	0
NIPSNAP1	8508	broad.mit.edu	37	22	29965262	29965262	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:29965262G>A	uc003afx.3	-	4	360	c.287C>T	c.(286-288)CCC>CTC	p.P96L	NIPSNAP1_uc011akp.1_Missense_Mutation_p.P76L	NM_003634	NP_003625	Q9BPW8	NIPS1_HUMAN	nipsnap homolog 1	96								p.?(1)		skin(1)	1						GTGAAGCTTGGGCAGCACAGC	0.592													5	23					0	0	0.001984	0	0
HORMAD2	150280	broad.mit.edu	37	22	30518046	30518046	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:30518046G>A	uc003agy.2	+	10	727	c.662G>A	c.(661-663)GGA>GAA	p.G221E		NM_152510	NP_689723	Q8N7B1	HORM2_HUMAN	HORMA domain containing 2	221	HORMA.				meiosis|mitosis	chromosome|nucleus					0			Epithelial(10;0.125)			GTGCAAGTGGGATTTGTCTCC	0.443													10	11					0	0	0.006214	0	0
LIF	3976	broad.mit.edu	37	22	30640036	30640036	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:30640036C>T	uc003agz.2	-	3	325	c.213G>A	c.(211-213)GGG>GGA	p.G71G	LIF_uc011aks.1_Missense_Mutation_p.G12R|uc003aha.2_5'Flank	NM_002309	NP_002300	P15018	LIF_HUMAN	leukemia inhibitory factor (cholinergic	71					immune response|leukemia inhibitory factor signaling pathway|negative regulation of hormone secretion|positive regulation of cell proliferation|positive regulation of macrophage differentiation|positive regulation of MAPKKK cascade|positive regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis|positive regulation of peptidyl-serine phosphorylation of STAT protein|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tyrosine phosphorylation of Stat1 protein|positive regulation of tyrosine phosphorylation of Stat3 protein|regulation of metanephric nephron tubule epithelial cell differentiation		cytokine activity|growth factor activity|leukemia inhibitory factor receptor binding				0			Epithelial(10;0.171)			GGAACGGCTCCCCCTGggctg	0.343													13	17					0	0	0.003163	0	0
MORC2	22880	broad.mit.edu	37	22	31331295	31331295	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:31331295G>A	uc003aje.1	-	19	2930	c.1566C>T	c.(1564-1566)ATC>ATT	p.I522I		NM_014941	NP_055756	Q9Y6X9	MORC2_HUMAN	MORC family CW-type zinc finger 2	584	Potential.						ATP binding|zinc ion binding			ovary(1)|pancreas(1)	2						CTTGGGAGCGGATGGGTGTGG	0.483													5	26					0	0	0.001984	0	0
SMTN	6525	broad.mit.edu	37	22	31487081	31487081	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:31487081C>T	uc003ajl.1	+	10	1290	c.1072C>T	c.(1072-1074)CCC>TCC	p.P358S	SMTN_uc003ajk.1_Missense_Mutation_p.P358S|SMTN_uc003ajm.1_Missense_Mutation_p.P358S|SMTN_uc011ale.1_Missense_Mutation_p.P412S|SMTN_uc011alf.1_Missense_Mutation_p.P414S|SMTN_uc003ajn.1_Missense_Mutation_p.P350S|SMTN_uc011alg.1_5'UTR|SMTN_uc003ajo.1_5'Flank|SMTN_uc011alh.1_5'Flank|SMTN_uc010gwe.1_5'Flank	NM_006932	NP_008863	P53814	SMTN_HUMAN	smoothelin isoform c	358					muscle organ development|smooth muscle contraction	actin cytoskeleton|cytoplasm	actin binding|structural constituent of muscle			large_intestine(2)|pancreas(1)	3						TGCCCTAAGTCCCCTGACCCC	0.662													7	51					0	0	0.004482	0	0
PLA2G3	50487	broad.mit.edu	37	22	31533881	31533881	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:31533881G>A	uc003aka.2	-	4	1010	c.881C>T	c.(880-882)TCC>TTC	p.S294F		NM_015715	NP_056530	Q9NZ20	PA2G3_HUMAN	phospholipase A2, group III precursor	294					cilium morphogenesis|lipid catabolic process|phospholipid metabolic process	centriole|extracellular space|plasma membrane	calcium ion binding|calcium-dependent phospholipase A2 activity				0						TGGGCTCCGGGAGCTGGGAGT	0.647													22	85					0	0	0.002780	0	0
DEPDC5	9681	broad.mit.edu	37	22	32215147	32215147	+	Silent	SNP	T	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:32215147T>A	uc003als.2	+	22	1948	c.1806T>A	c.(1804-1806)GCT>GCA	p.A602A	DEPDC5_uc011als.1_Silent_p.A602A|DEPDC5_uc011alu.1_Silent_p.A602A|DEPDC5_uc011alv.1_RNA|DEPDC5_uc003alt.2_Silent_p.A602A|DEPDC5_uc003alu.2_Silent_p.A42A|DEPDC5_uc003alv.2_RNA|DEPDC5_uc011alt.1_Silent_p.A574A	NM_014662	NP_055477	O75140	DEPD5_HUMAN	DEP domain containing 5 isoform 1	602					intracellular signal transduction					ovary(4)|central_nervous_system(3)|pancreas(1)	8						ACCCCTTCGCTCCCTCTCGGA	0.493													37	38					0	0	0.007835	0	0
DEPDC5	9681	broad.mit.edu	37	22	32215160	32215160	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:32215160C>T	uc003als.2	+	22	1961	c.1819C>T	c.(1819-1821)CCC>TCC	p.P607S	DEPDC5_uc011als.1_Missense_Mutation_p.P607S|DEPDC5_uc011alu.1_Missense_Mutation_p.P607S|DEPDC5_uc011alv.1_RNA|DEPDC5_uc003alt.2_Missense_Mutation_p.P607S|DEPDC5_uc003alu.2_Missense_Mutation_p.P47S|DEPDC5_uc003alv.2_RNA|DEPDC5_uc011alt.1_Missense_Mutation_p.P579S	NM_014662	NP_055477	O75140	DEPD5_HUMAN	DEP domain containing 5 isoform 1	607					intracellular signal transduction					ovary(4)|central_nervous_system(3)|pancreas(1)	8						CTCTCGGATGCCCATGAAGCT	0.448													13	47					0	0	0.002450	0	0
FBXO7	25793	broad.mit.edu	37	22	32880020	32880020	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:32880020C>T	uc003amq.2	+	3	837	c.554C>T	c.(553-555)ACC>ATC	p.T185I	FBXO7_uc003amp.1_Missense_Mutation_p.T71I|FBXO7_uc003amr.2_Missense_Mutation_p.T71I|FBXO7_uc003ams.2_Missense_Mutation_p.T29I|FBXO7_uc003amt.2_Missense_Mutation_p.T106I|FBXO7_uc003amu.2_Missense_Mutation_p.T71I	NM_012179	NP_036311	Q9Y3I1	FBX7_HUMAN	F-box only protein 7 isoform 1	185					cell death|regulation of protein stability|ubiquitin-dependent protein catabolic process	ubiquitin ligase complex	protein binding|ubiquitin-protein ligase activity			ovary(1)	1						TCATTAGAGACCTTGTATCAA	0.453													40	54					0	0	0.010771	0	0
SYN3	8224	broad.mit.edu	37	22	32924936	32924936	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:32924936C>T	uc003amx.2	-	10	1314	c.1155G>A	c.(1153-1155)ATG>ATA	p.M385I	SYN3_uc003amy.2_Missense_Mutation_p.M385I|SYN3_uc003amz.2_Missense_Mutation_p.M384I|SYN3_uc011amc.1_Missense_Mutation_p.M19I	NM_003490	NP_003481	O14994	SYN3_HUMAN	synapsin III isoform IIIa	385	C; actin-binding and synaptic-vesicle binding.				neurotransmitter secretion	cell junction|synaptic vesicle membrane	ATP binding|ligase activity			skin(1)	1						CAAGGTCGGCCATCAGCTGTC	0.592											OREG0026488	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	8	33					0	0	0.010729	0	0
LARGE	9215	broad.mit.edu	37	22	33673202	33673202	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:33673202G>A	uc003and.3	-	15	2496	c.1917C>T	c.(1915-1917)TTC>TTT	p.F639F	LARGE_uc011amd.1_Silent_p.F438F|LARGE_uc003ane.3_Silent_p.F639F|LARGE_uc010gwp.2_Silent_p.F587F|LARGE_uc011ame.1_Silent_p.F571F|LARGE_uc011amf.1_Silent_p.F590F	NM_004737	NP_004728	O95461	LARGE_HUMAN	like-glycosyltransferase	639	Lumenal (Potential).				glycosphingolipid biosynthetic process|muscle cell homeostasis|N-acetylglucosamine metabolic process|protein glycosylation	integral to Golgi membrane	acetylglucosaminyltransferase activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Lung NSC(1;0.219)				GCCACTTGGCGAAGTTTGTGG	0.582													5	19					0	0	0.001168	0	0
LARGE	9215	broad.mit.edu	37	22	33733769	33733769	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:33733769G>A	uc003and.3	-	11	1729	c.1150C>T	c.(1150-1152)CCC>TCC	p.P384S	LARGE_uc011amd.1_Missense_Mutation_p.P183S|LARGE_uc003ane.3_Missense_Mutation_p.P384S|LARGE_uc010gwp.2_Intron|LARGE_uc011ame.1_Missense_Mutation_p.P316S|LARGE_uc011amf.1_Missense_Mutation_p.P384S|LARGE_uc010gwq.1_RNA	NM_004737	NP_004728	O95461	LARGE_HUMAN	like-glycosyltransferase	384	Lumenal (Potential).				glycosphingolipid biosynthetic process|muscle cell homeostasis|N-acetylglucosamine metabolic process|protein glycosylation	integral to Golgi membrane	acetylglucosaminyltransferase activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Lung NSC(1;0.219)				AGCTTCTTGGGGGAGTTCCAG	0.552													8	30					0	0	0.004482	0	0
LARGE	9215	broad.mit.edu	37	22	34046368	34046368	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:34046368G>A	uc003and.3	-	4	972	c.393C>T	c.(391-393)GTC>GTT	p.V131V	LARGE_uc003ane.3_Silent_p.V131V|LARGE_uc010gwp.2_Silent_p.V131V|LARGE_uc011ame.1_Silent_p.V63V|LARGE_uc011amf.1_Silent_p.V131V	NM_004737	NP_004728	O95461	LARGE_HUMAN	like-glycosyltransferase	131	Lumenal (Potential).				glycosphingolipid biosynthetic process|muscle cell homeostasis|N-acetylglucosamine metabolic process|protein glycosylation	integral to Golgi membrane	acetylglucosaminyltransferase activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Lung NSC(1;0.219)				ATTTCTCCACGACCGGCTGCT	0.597													18	76					0	0	0.010504	0	0
MCM5	4174	broad.mit.edu	37	22	35799484	35799484	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:35799484C>T	uc003anu.3	+	4	466	c.372C>T	c.(370-372)ATC>ATT	p.I124I	MCM5_uc010gwr.2_5'UTR|MCM5_uc003anv.3_Intron	NM_006739	NP_006730	P33992	MCM5_HUMAN	minichromosome maintenance complex component 5	124					cell cycle checkpoint|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle	MCM complex	ATP binding|DNA binding|helicase activity|protein binding			ovary(1)	1						TCCAGGACATCCAGGTCATGC	0.498													13	92					0	0	0.002450	0	0
MB	4151	broad.mit.edu	37	22	36013288	36013288	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:36013288C>T	uc003anz.2	-	1	97	c.17G>A	c.(16-18)GGG>GAG	p.G6E	MB_uc003aoa.2_Missense_Mutation_p.G6E|MB_uc003aob.2_Missense_Mutation_p.G6E	NM_005368	NP_005359	P02144	MYG_HUMAN	myoglobin	6							heme binding|oxygen transporter activity				0						CTGCCATTCCCCGTCGCTGAG	0.577													18	23					0	0	0.006122	0	0
CACNG2	10369	broad.mit.edu	37	22	36960533	36960533	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:36960533C>T	uc003aps.1	-	4	1119	c.837G>A	c.(835-837)AAG>AAA	p.K279K		NM_006078	NP_006069	Q9Y698	CCG2_HUMAN	voltage-dependent calcium channel gamma-2	279					membrane depolarization|regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|endocytic vesicle membrane|voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity				0						TGGTGGCGGCCTTCAGGGGGT	0.607													39	55					0	0	0.009718	0	0
PVALB	5816	broad.mit.edu	37	22	37209712	37209712	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:37209712C>T	uc010gwz.2	-	3	312	c.282G>A	c.(280-282)GGG>GGA	p.G94G	PVALB_uc003apx.2_Silent_p.G94G	NM_002854	NP_002845	P20472	PRVA_HUMAN	parvalbumin	94	EF-hand 2.|2.						calcium ion binding			skin(1)	1						TTTTGCCGTCCCCATCTTTGT	0.507													28	96					0	0	0.012213	0	0
PVALB	5816	broad.mit.edu	37	22	37211164	37211164	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:37211164G>A	uc010gwz.2	-	2	207	c.177C>T	c.(175-177)ATC>ATT	p.I59I	PVALB_uc003apx.2_Silent_p.I59I	NM_002854	NP_002845	P20472	PRVA_HUMAN	parvalbumin	59	1.|EF-hand 1.						calcium ion binding			skin(1)	1						CATCCTCCTCGATGAAGCCAC	0.557													7	19					0	0	0.003080	0	0
NCF4	4689	broad.mit.edu	37	22	37272105	37272105	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:37272105C>T	uc003apy.3	+	9	977	c.793C>T	c.(793-795)CCC>TCC	p.P265S	NCF4_uc003apz.3_Silent_p.L346L	NM_000631	NP_000622	Q15080	NCF4_HUMAN	neutrophil cytosolic factor 4 isoform 1	265					cell communication|immune response|oxidation-reduction process	cytosol|NADPH oxidase complex	phosphatidylinositol binding|protein dimerization activity			ovary(1)	1						CAGCAGCACTCCCCTATTGAA	0.567													5	11					0	0	0.000602	0	0
NCF4	4689	broad.mit.edu	37	22	37273719	37273719	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:37273719G>A	uc003apy.3	+	10	1058	c.874G>A	c.(874-876)GGG>AGG	p.G292R	NCF4_uc003apz.3_3'UTR	NM_000631	NP_000622	Q15080	NCF4_HUMAN	neutrophil cytosolic factor 4 isoform 1	292					cell communication|immune response|oxidation-reduction process	cytosol|NADPH oxidase complex	phosphatidylinositol binding|protein dimerization activity			ovary(1)	1						GGACGCTGAGGGGGATCTGGT	0.602													14	42					0	0	0.003163	0	0
TST	7263	broad.mit.edu	37	22	37407092	37407092	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:37407092G>A	uc003aqg.2	-	2	1570	c.870C>T	c.(868-870)TCC>TCT	p.S290S	TST_uc003aqh.2_Silent_p.S290S	NM_003312	NP_003303	Q16762	THTR_HUMAN	thiosulfate sulfurtransferase	290					cyanate catabolic process|rRNA transport	mitochondrial matrix|plasma membrane	5S rRNA binding|thiosulfate sulfurtransferase activity				0						ACTTTCCCTGGGACACACGGC	0.602													24	58					0	0	0.010818	0	0
TMPRSS6	164656	broad.mit.edu	37	22	37462263	37462263	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:37462263G>A	uc003aqs.1	-	18	2407	c.2293C>T	c.(2293-2295)CCG>TCG	p.P765S	TMPRSS6_uc003aqt.1_Missense_Mutation_p.P778S	NM_153609	NP_705837	Q8IU80	TMPS6_HUMAN	transmembrane protease, serine 6	765	Peptidase S1.|Extracellular (Potential).				angiogenesis|extracellular matrix organization|fibrinolysis|intracellular signal transduction|proteolysis	integral to membrane|intracellular|plasma membrane	serine-type endopeptidase activity			breast(4)|ovary(1)|skin(1)	6						CACACCAGCGGACCACCTGAG	0.617													8	12					0	0	0.003080	0	0
SSTR3	6753	broad.mit.edu	37	22	37602955	37602955	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:37602955G>A	uc003ara.2	-	2	950	c.888C>T	c.(886-888)TTC>TTT	p.F296F	SSTR3_uc003arb.2_Silent_p.F296F	NM_001051	NP_001042	P32745	SSR3_HUMAN	somatostatin receptor 3	296	Helical; Name=7; (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|induction of apoptosis by hormones|negative regulation of cell proliferation	integral to plasma membrane|nonmotile primary cilium	somatostatin receptor activity			lung(1)	1						CCACCACCAGGAAGTAGAGCC	0.607													12	60					0	0	0.013537	0	0
ELFN2	114794	broad.mit.edu	37	22	37770345	37770345	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:37770345G>A	uc003asq.3	-	3	2016	c.1230C>T	c.(1228-1230)ATC>ATT	p.I410I		NM_052906	NP_443138	Q5R3F8	LRFN6_HUMAN	leucine rich repeat containing 62	410	Helical; (Potential).					cell surface|integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2	Melanoma(58;0.0574)					CTCCCAGCACGATAACCATGC	0.612													15	60					0	0	0.006122	0	0
CDC42EP1	11135	broad.mit.edu	37	22	37964701	37964701	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:37964701C>T	uc003asz.3	+	3	1453	c.1050C>T	c.(1048-1050)TCC>TCT	p.S350S		NM_152243	NP_689449	Q00587	BORG5_HUMAN	CDC42 effector protein 1	350					positive regulation of pseudopodium assembly|regulation of cell shape	actin cytoskeleton|endomembrane system|Golgi apparatus|plasma membrane	protein binding				0	Melanoma(58;0.0574)					CCCGGGCCTCCTGGGAGAGCC	0.672													11	16					0	0	0.008291	0	0
TRIOBP	11078	broad.mit.edu	37	22	38120920	38120921	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:38120920_38120921CC>TT	uc003atr.2	+	7	2628_2629	c.2357_2358CC>TT	c.(2356-2358)GCC>GTT	p.A786V	TRIOBP_uc003atu.2_Missense_Mutation_p.A614V|TRIOBP_uc003atq.1_Missense_Mutation_p.A786V|TRIOBP_uc003ats.1_Missense_Mutation_p.A614V	NM_001039141	NP_001034230	Q9H2D6	TARA_HUMAN	TRIO and F-actin binding protein isoform 6	786					actin modification|barbed-end actin filament capping	actin cytoskeleton|cytoplasm|nucleus	actin binding|GTP-Rho binding|myosin II binding|protein binding|ubiquitin protein ligase binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					CCCAATAGAGCCACACGAGACA	0.545													20	30					0	0	0.004672	0	0
GTPBP1	9567	broad.mit.edu	37	22	39120355	39120355	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:39120355C>T	uc003awg.2	+	6	1166	c.1012C>T	c.(1012-1014)CCC>TCC	p.P338S		NM_004286	NP_004277	O00178	GTPB1_HUMAN	GTP binding protein 1	338					immune response|positive regulation of mRNA catabolic process|signal transduction	cytoplasmic exosome (RNase complex)|cytosol	GTP binding|GTPase activity			ovary(1)	1	Melanoma(58;0.04)					CCGGAAGATCCCCGTGCTGGT	0.537													9	47					0	0	0.008291	0	0
APOBEC3D	140564	broad.mit.edu	37	22	39421083	39421083	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:39421083C>T	uc011aoe.1	+	3	273	c.219C>T	c.(217-219)TTC>TTT	p.F73F	APOBEC3D_uc011aod.1_Silent_p.F73F|APOBEC3D_uc011aof.1_Intron|APOBEC3D_uc003awu.3_Intron|APOBEC3D_uc003awt.3_Silent_p.F73F|APOBEC3D_uc010gxu.2_Intron	NM_152426	NP_689639	Q96AK3	ABC3D_HUMAN	apolipoprotein B mRNA editing enzyme, catalytic	73					negative regulation of transposition		hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines|zinc ion binding				0	Melanoma(58;0.04)					AGGTGTATTTCCGGTTTGAGA	0.313													6	15					0	0	0.001168	0	0
APOBEC3F	200316	broad.mit.edu	37	22	39445537	39445537	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:39445537T>C	uc003aww.2	+	5	967	c.674T>C	c.(673-675)GTA>GCA	p.V225A		NM_145298	NP_660341	Q9HC16	ABC3G_HUMAN	apolipoprotein B mRNA editing enzyme, catalytic	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					base conversion or substitution editing|DNA cytosine deamination|innate immune response|interspecies interaction between organisms|negative regulation of retroviral genome replication|negative regulation of transposition|positive regulation of defense response to virus by host|response to virus|viral reproduction	apolipoprotein B mRNA editing enzyme complex|cytosol|mitochondrion	cytidine deaminase activity|dCTP deaminase activity|protein homodimerization activity|RNA binding|zinc ion binding				0	Melanoma(58;0.04)					ATGGAAGTTGTAAAGCACCAC	0.478													46	56					0	0	0.014410	0	0
APOBEC3H	164668	broad.mit.edu	37	22	39497945	39497945	+	Missense_Mutation	SNP	C	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:39497945C>A	uc011aoh.1	+	4	507	c.441C>A	c.(439-441)AAC>AAA	p.N147K	APOBEC3H_uc011aoi.1_RNA|APOBEC3H_uc003axa.3_RNA	NM_181773	NP_861438	Q6NTF7	ABC3H_HUMAN	apolipoprotein B mRNA editing enzyme, catalytic	147					DNA cytosine deamination|negative regulation of retroviral genome replication|negative regulation of transposition	cytoplasm|nucleus	cytidine deaminase activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2	Melanoma(58;0.04)					GCTGGGAAAACTTTGTGGACC	0.488													13	53					4.36969e-10	4.70462e-10	0.001855	1	0
ENTHD1	150350	broad.mit.edu	37	22	40283749	40283749	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:40283749C>T	uc003ayg.2	-	2	255	c.4G>A	c.(4-6)GCG>ACG	p.A2T		NM_152512	NP_689725	Q8IYW4	ENTD1_HUMAN	ENTH domain containing 1	2										ovary(2)|skin(1)	3	Melanoma(58;0.0749)					CTCCTGAACGCCATAAGTAAT	0.408													5	22					0	0	0.001168	0	0
L3MBTL2	83746	broad.mit.edu	37	22	41621034	41621034	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:41621034C>T	uc003azo.2	+	11	1369	c.1315C>T	c.(1315-1317)CCC>TCC	p.P439S	L3MBTL2_uc010gyi.1_Missense_Mutation_p.P348S|L3MBTL2_uc003azn.2_RNA	NM_031488	NP_113676	Q969R5	LMBL2_HUMAN	l(3)mbt-like 2	439	MBT 3.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	methylated histone residue binding|transcription corepressor activity|zinc ion binding			ovary(2)|central_nervous_system(1)	3						GGCCATTGACCCCCTGAATCT	0.597													20	66					0	0	0.002780	0	0
MEI1	150365	broad.mit.edu	37	22	42189900	42189900	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:42189900G>A	uc003baz.1	+	27	3438	c.3413G>A	c.(3412-3414)CGG>CAG	p.R1138Q	WBP2NL_uc011ape.1_Intron|LOC339674_uc003bba.1_Intron|MEI1_uc011apd.1_RNA|MEI1_uc003bbb.1_Missense_Mutation_p.R524Q|MEI1_uc003bbc.1_Missense_Mutation_p.R506Q|MEI1_uc010gym.1_Missense_Mutation_p.R471Q|MEI1_uc003bbd.1_Missense_Mutation_p.R381Q|MEI1_uc010gyn.1_RNA|MEI1_uc003bbe.1_RNA|MEI1_uc011apf.1_Missense_Mutation_p.R152Q|MEI1_uc010gyo.1_3'UTR|MEI1_uc003bbf.2_Missense_Mutation_p.R152Q|MEI1_uc003bbg.2_Missense_Mutation_p.R152Q	NM_152513	NP_689726	Q5TIA1	MEI1_HUMAN	meiosis defective 1	1138							binding			central_nervous_system(1)|skin(1)	2						CTGGATGCCCGGAGCCCAGAC	0.478													5	21					0	0	0.001168	0	0
CYP2D6	1565	broad.mit.edu	37	22	42525765	42525765	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:42525765G>A	uc003bce.2	-	2	417	c.327C>T	c.(325-327)ATC>ATT	p.I109I	uc003bcd.1_Intron|CYP2D6_uc010gyu.2_5'UTR|CYP2D6_uc003bcf.2_Silent_p.I109I	NM_000106	NP_000097	Q6NWU0	Q6NWU0_HUMAN	cytochrome P450, family 2, subfamily D,	109							electron carrier activity|heme binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen			breast(1)|skin(1)	2						CGAAACCCAGGATCTGGGTGA	0.697													14	21					0	0	0.002450	0	0
SCUBE1	80274	broad.mit.edu	37	22	43735128	43735128	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:43735128C>T	uc003bdt.1	-	2	290	c.202G>A	c.(202-204)GAA>AAA	p.E68K	SCUBE1_uc003bdu.1_Missense_Mutation_p.E68K	NM_173050	NP_766638	Q8IWY4	SCUB1_HUMAN	signal peptide, CUB domain, EGF-like 1	68	EGF-like 1; calcium-binding (Potential).				adult heart development|blood coagulation|endothelial cell differentiation|inflammatory response|post-embryonic development|protein homooligomerization	external side of plasma membrane|extracellular space|extrinsic to plasma membrane	calcium ion binding|identical protein binding|protein heterodimerization activity			central_nervous_system(2)|ovary(1)|lung(1)|skin(1)	5		all_neural(38;0.0414)|Ovarian(80;0.07)				TGCTTGCCTTCCCCCTTGTAG	0.612													25	51					0	0	0.004656	0	0
EFCAB6	64800	broad.mit.edu	37	22	43933371	43933371	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:43933371G>A	uc003bdy.1	-	29	4149	c.3934C>T	c.(3934-3936)CCC>TCC	p.P1312S	EFCAB6_uc003bdz.1_Missense_Mutation_p.P1160S|EFCAB6_uc010gzi.1_Missense_Mutation_p.P1160S	NM_022785	NP_073622	Q5THR3	EFCB6_HUMAN	CAP-binding protein complex interacting protein	1312	Interaction with PARK7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	calcium ion binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	7		Ovarian(80;0.0247)|all_neural(38;0.025)				CTCTCTATGGGATCACAGTTC	0.542													9	40					0	0	0.008291	0	0
EFCAB6	64800	broad.mit.edu	37	22	43996129	43996129	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:43996129C>T	uc003bdy.1	-	23	2911	c.2696G>A	c.(2695-2697)GGA>GAA	p.G899E	EFCAB6_uc003bdz.1_Missense_Mutation_p.G747E|EFCAB6_uc010gzi.1_Missense_Mutation_p.G747E|EFCAB6_uc010gzj.1_Missense_Mutation_p.G125E	NM_022785	NP_073622	Q5THR3	EFCB6_HUMAN	CAP-binding protein complex interacting protein	899	EF-hand 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	calcium ion binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	7		Ovarian(80;0.0247)|all_neural(38;0.025)				GTGCCCTTTTCCCTCGGTGTC	0.428													17	94					0	0	0.004990	0	0
SULT4A1	25830	broad.mit.edu	37	22	44237795	44237795	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:44237795C>T	uc003bee.1	-	2	303	c.187G>A	c.(187-189)GAG>AAG	p.E63K	SULT4A1_uc003bed.1_5'UTR|SULT4A1_uc003bef.1_RNA|SULT4A1_uc011aqb.1_Intron	NM_014351	NP_055166	Q9BR01	ST4A1_HUMAN	sulfotransferase family 4A, member 1	63					3'-phosphoadenosine 5'-phosphosulfate metabolic process|steroid metabolic process|xenobiotic metabolic process	cytosol	sulfotransferase activity				0		Ovarian(80;0.024)|all_neural(38;0.0416)		Colorectal(1;0.00242)|READ - Rectum adenocarcinoma(1;0.0419)		TAGACCACCTCCTGCAGCAAG	0.677													8	24					0	0	0.006214	0	0
PHF21B	112885	broad.mit.edu	37	22	45283928	45283929	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:45283928_45283929GG>AA	uc003bfn.2	-	10	1262_1263	c.1111_1112CC>TT	c.(1111-1113)CCG>TTG	p.P371L	PHF21B_uc003bfm.2_Missense_Mutation_p.P167L|PHF21B_uc011aqk.1_Missense_Mutation_p.P317L|PHF21B_uc011aql.1_Missense_Mutation_p.P329L|PHF21B_uc011aqm.1_3'UTR	NM_138415	NP_612424	Q96EK2	PF21B_HUMAN	PHD finger protein 21B isoform 1	371	PHD-type.						zinc ion binding			ovary(2)|skin(1)	3		all_neural(38;0.00802)|Glioma(61;0.0353)|Ovarian(80;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0203)		GTAGGCCCCCGGGCAGGTGCCG	0.678													6	7					0	0	0.004672	0	0
PHF21B	112885	broad.mit.edu	37	22	45309846	45309846	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:45309846G>A	uc003bfn.2	-	5	838	c.687C>T	c.(685-687)TTC>TTT	p.F229F	PHF21B_uc003bfm.2_Intron|PHF21B_uc011aqk.1_Intron|PHF21B_uc011aql.1_Intron|PHF21B_uc011aqm.1_Intron	NM_138415	NP_612424	Q96EK2	PF21B_HUMAN	PHD finger protein 21B isoform 1	229							zinc ion binding			ovary(2)|skin(1)	3		all_neural(38;0.00802)|Glioma(61;0.0353)|Ovarian(80;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0203)		TGATGACCTGGAAGATGCCAT	0.343													43	45					0	0	0.009718	0	0
FBLN1	2192	broad.mit.edu	37	22	45923772	45923772	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:45923772G>A	uc003bgj.1	+	4	514	c.367G>A	c.(367-369)GGC>AGC	p.G123S	FBLN1_uc003bgg.1_Missense_Mutation_p.G123S|FBLN1_uc003bgh.2_Missense_Mutation_p.G123S|FBLN1_uc010gzz.2_Missense_Mutation_p.G161S|FBLN1_uc003bgi.1_Missense_Mutation_p.G123S	NM_006486	NP_006477	P23142	FBLN1_HUMAN	fibulin 1 isoform D	123	Anaphylatoxin-like 3.				interspecies interaction between organisms	extracellular space|soluble fraction	calcium ion binding|extracellular matrix structural constituent|protein binding			ovary(1)|central_nervous_system(1)	2		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0182)		CCAGGCCCAGGGCCAGAGCTG	0.632													15	64					0	0	0.004007	0	0
FBLN1	2192	broad.mit.edu	37	22	45970511	45970511	+	Missense_Mutation	SNP	C	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:45970511C>G	uc003bgj.1	+	15	1965	c.1818C>G	c.(1816-1818)TTC>TTG	p.F606L		NM_006486	NP_006477	P23142	FBLN1_HUMAN	fibulin 1 isoform D	606					interspecies interaction between organisms	extracellular space|soluble fraction	calcium ion binding|extracellular matrix structural constituent|protein binding			ovary(1)|central_nervous_system(1)	2		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0182)		TGCCTACCTTCCGCGAGTTCA	0.652													8	18					0	0	0.004482	0	0
PKDREJ	10343	broad.mit.edu	37	22	46653856	46653856	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:46653856G>A	uc003bhh.2	-	1	5364	c.5364C>T	c.(5362-5364)ATC>ATT	p.I1788I		NM_006071	NP_006062	Q9NTG1	PKDRE_HUMAN	receptor for egg jelly-like protein precursor	1788	Extracellular (Potential).				acrosome reaction|neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity			breast(3)|ovary(2)	5		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00459)		GAAGGCCAAGGATTTTAGACG	0.413													64	74					0	0	0.014410	0	0
GRAMD4	23151	broad.mit.edu	37	22	47071398	47071398	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:47071398C>T	uc003bhx.2	+	16	1551	c.1512C>T	c.(1510-1512)TCC>TCT	p.S504S	GRAMD4_uc010had.2_Silent_p.S443S|GRAMD4_uc003bhy.2_Silent_p.S27S	NM_015124	NP_055939	Q6IC98	GRAM4_HUMAN	death-inducing-protein	504	GRAM.				apoptosis	integral to membrane|mitochondrial membrane				ovary(1)	1		Breast(42;0.00571)|Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0178)|BRCA - Breast invasive adenocarcinoma(115;0.166)		AATCTGGGTCCTCAAAGAGGA	0.562													14	64					0	0	0.002450	0	0
TTLL8	164714	broad.mit.edu	37	22	50483717	50483717	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:50483717C>T	uc011ark.1	-	6	610	c.610G>A	c.(610-612)GAG>AAG	p.E204K		NM_001080447	NP_001073916			tubulin tyrosine ligase-like family, member 8											ovary(2)	2		all_cancers(38;3.44e-07)|all_epithelial(38;2.44e-06)|all_lung(38;0.00141)|Breast(42;0.00519)|Lung NSC(38;0.0199)|Ovarian(80;0.142)|Lung SC(80;0.162)		READ - Rectum adenocarcinoma(2;0.000882)|Colorectal(2;0.00311)|BRCA - Breast invasive adenocarcinoma(115;0.226)		CTCCCGGCCTCCTCCCTCTGG	0.697													6	13					0	0	0.001984	0	0
MLC1	23209	broad.mit.edu	37	22	50500075	50500075	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:50500075G>A	uc003bjg.1	-	12	1344	c.1071C>T	c.(1069-1071)AGC>AGT	p.S357S	MLC1_uc011arl.1_Silent_p.S305S|MLC1_uc003bjh.1_Silent_p.S357S|MLC1_uc011arm.1_Silent_p.S327S|MLC1_uc011arn.1_Silent_p.S278S|MLC1_uc011aro.1_Silent_p.S323S	NM_139202	NP_631941	Q15049	MLC1_HUMAN	megalencephalic leukoencephalopathy with	357						basolateral plasma membrane|endosome|integral to membrane|integral to membrane of membrane fraction	ion channel activity			pancreas(1)	1		all_cancers(38;7.69e-11)|all_epithelial(38;9.52e-10)|all_lung(38;3.67e-05)|Breast(42;0.000776)|Lung NSC(38;0.000946)|Ovarian(80;0.0365)|Lung SC(80;0.113)		READ - Rectum adenocarcinoma(2;0.000669)|Colorectal(2;0.00242)|LUAD - Lung adenocarcinoma(64;0.0695)|BRCA - Breast invasive adenocarcinoma(115;0.216)		CCTTCAGGGGGCTCCTGGCCA	0.652													21	31					0	0	0.012319	0	0
PLXNB2	23654	broad.mit.edu	37	22	50722331	50722331	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:50722331G>A	uc003bkv.3	-	14	2458	c.2352C>T	c.(2350-2352)GGC>GGT	p.G784G	PLXNB2_uc003bkt.1_5'Flank|PLXNB2_uc003bku.1_5'Flank	NM_012401	NP_036533	O15031	PLXB2_HUMAN	plexin B2 precursor	784	Extracellular (Potential).				regulation of small GTPase mediated signal transduction	integral to membrane|intracellular	GTPase activator activity|protein binding|receptor activity			ovary(4)|central_nervous_system(1)|skin(1)	6		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		ACCTGCTCTGGCCCCCGCACC	0.672													4	3					0	0	0.009096	0	0
SBF1	6305	broad.mit.edu	37	22	50885667	50885667	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr22:50885667C>T	uc003blh.2	-	41	5781	c.5586G>A	c.(5584-5586)GTG>GTA	p.V1862V	SBF1_uc003ble.2_Silent_p.V326V|SBF1_uc003blf.2_Silent_p.V338V|SBF1_uc011arx.1_Silent_p.V1500V	NM_002972	NP_002963	O95248	MTMR5_HUMAN	SET binding factor 1	1836	PH.				protein dephosphorylation	integral to membrane|nucleus	protein tyrosine/serine/threonine phosphatase activity				0		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.206)|LUAD - Lung adenocarcinoma(64;0.247)		GCGTTGTCTTCACCTGGGGAA	0.657													14	19					0	0	0.002450	0	0
CNTN6	27255	broad.mit.edu	37	3	1415662	1415662	+	Missense_Mutation	SNP	C	T	T	rs10620350		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:1415662C>T	uc003boz.2	+	16	2267	c.2000C>T	c.(1999-2001)CCT>CTT	p.P667L	CNTN6_uc011asj.1_Missense_Mutation_p.P595L|CNTN6_uc003bpa.2_Missense_Mutation_p.P667L	NM_014461	NP_055276	Q9UQ52	CNTN6_HUMAN	contactin 6 precursor	667	Fibronectin type-III 1.				axon guidance|cell adhesion|central nervous system development|Notch signaling pathway	anchored to membrane|plasma membrane				skin(3)|lung(2)|breast(2)|pancreas(1)	8		all_cancers(2;0.000164)|all_epithelial(2;0.107)		Epithelial(13;0.000233)|all cancers(10;0.0013)|OV - Ovarian serous cystadenocarcinoma(96;0.0139)		GGTTTGAGTCCTTGGGTGGAA	0.408													17	28					0	0	0.007413	0	0
IL5RA	3568	broad.mit.edu	37	3	3146588	3146588	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:3146588C>T	uc011ask.1	-	4	725	c.81G>A	c.(79-81)AAG>AAA	p.K27K	IL5RA_uc010hbq.2_Silent_p.K27K|IL5RA_uc010hbr.2_Silent_p.K27K|IL5RA_uc010hbs.2_Silent_p.K27K|IL5RA_uc011asl.1_Silent_p.K27K|IL5RA_uc011asm.1_Silent_p.K27K|IL5RA_uc010hbt.2_Silent_p.K27K|IL5RA_uc011asn.1_Silent_p.K27K|IL5RA_uc010hbu.2_Silent_p.K27K	NM_000564	NP_000555	Q01344	IL5RA_HUMAN	interleukin 5 receptor, alpha isoform 1	27	Extracellular (Potential).				cell proliferation	extracellular space|integral to membrane|plasma membrane	interleukin-5 receptor activity			ovary(1)	1				Epithelial(13;0.00278)|all cancers(10;0.00809)|OV - Ovarian serous cystadenocarcinoma(96;0.00944)		GGTCCTTACTCTTTTCATCAG	0.338													7	36					0	0	0.001984	0	0
EDEM1	9695	broad.mit.edu	37	3	5241372	5241372	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:5241372C>T	uc003bqi.2	+	3	810	c.678C>T	c.(676-678)GCC>GCT	p.A226A	EDEM1_uc011asz.1_Intron|EDEM1_uc003bqh.2_Silent_p.A226A	NM_014674	NP_055489	Q92611	EDEM1_HUMAN	ER degradation enhancer, mannosidase alpha-like	226	Lumenal (Potential).				ER-associated protein catabolic process|post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine|response to unfolded protein	integral to endoplasmic reticulum membrane	calcium ion binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity|misfolded protein binding			ovary(2)|breast(1)	3				Epithelial(13;0.0588)|OV - Ovarian serous cystadenocarcinoma(96;0.0682)		TCTTTGAGGCCACGATAAGGT	0.343													10	22					0	0	0.006214	0	0
GRM7	2917	broad.mit.edu	37	3	7620949	7620949	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:7620949G>A	uc003bqm.2	+	8	2630	c.2356G>A	c.(2356-2358)GAA>AAA	p.E786K	GRM7_uc011ata.1_RNA|GRM7_uc011atb.1_RNA|GRM7_uc010hcf.2_RNA|GRM7_uc011atc.1_RNA|GRM7_uc010hcg.2_Missense_Mutation_p.E786K|GRM7_uc003bql.2_Missense_Mutation_p.E786K|GRM7_uc003bqn.1_Missense_Mutation_p.E369K|GRM7_uc010hch.1_Missense_Mutation_p.E297K	NM_000844	NP_000835	Q14831	GRM7_HUMAN	glutamate receptor, metabotropic 7 isoform a	786	Cytoplasmic (Potential).				negative regulation of adenylate cyclase activity|negative regulation of cAMP biosynthetic process|negative regulation of glutamate secretion|sensory perception of smell|sensory perception of sound|synaptic transmission	asymmetric synapse|axon|cell cortex|dendritic shaft|integral to plasma membrane|postsynaptic membrane|presynaptic active zone	adenylate cyclase inhibitor activity|calcium ion binding|glutamate binding|group III metabotropic glutamate receptor activity|PDZ domain binding|serine binding			ovary(4)|lung(3)	7					L-Glutamic Acid(DB00142)	GAATTTTAACGAAGCCAAGCC	0.433													5	36					0	0	0.000602	0	0
C3orf32	51066	broad.mit.edu	37	3	8675454	8675454	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:8675454G>A	uc003bqu.2	-	4	417	c.171C>T	c.(169-171)GCC>GCT	p.A57A	C3orf32_uc003bqz.2_Silent_p.A57A|C3orf32_uc003bqt.2_Silent_p.A6A|C3orf32_uc011atg.1_Silent_p.A79A|C3orf32_uc003bqv.2_Silent_p.A6A|C3orf32_uc003bqw.2_RNA|C3orf32_uc003bqx.2_RNA|C3orf32_uc003bqy.2_Silent_p.A57A	NM_015931	NP_057015	Q9Y2M2	CC032_HUMAN	hypothetical protein LOC51066	57										skin(1)	1						GGGCTTCCCGGGCCACCTCCT	0.657													4	45					0	0	0.009096	0	0
SRGAP3	9901	broad.mit.edu	37	3	9034636	9034637	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:9034636_9034637GG>AA	uc003brf.1	-	20	3187_3188	c.2511_2512CC>TT	c.(2509-2514)TCCCCC>TCTTCC	p.P838S	SRGAP3_uc003brg.1_Missense_Mutation_p.P814S	NM_014850	NP_055665	O43295	SRGP2_HUMAN	SLIT-ROBO Rho GTPase activating protein 3	838					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding		SRGAP3/RAF1(4)	central_nervous_system(4)|skin(3)|urinary_tract(1)|breast(1)	9				OV - Ovarian serous cystadenocarcinoma(96;0.0563)		TGCTCCGTGGGGGACTGGAGGT	0.564			T	RAF1	pilocytic astrocytoma								20	42					0	0	0.004672	0	0
SRGAP3	9901	broad.mit.edu	37	3	9036102	9036102	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:9036102G>A	uc003brf.1	-	19	3009	c.2333C>T	c.(2332-2334)TCG>TTG	p.S778L	SRGAP3_uc003brg.1_Missense_Mutation_p.S754L	NM_014850	NP_055665	O43295	SRGP2_HUMAN	SLIT-ROBO Rho GTPase activating protein 3	778	SH3.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding		SRGAP3/RAF1(4)	central_nervous_system(4)|skin(3)|urinary_tract(1)|breast(1)	9				OV - Ovarian serous cystadenocarcinoma(96;0.0563)		CCAGTCCTCCGAGGCGCGGTG	0.587			T	RAF1	pilocytic astrocytoma								36	46					0	0	0.004289	0	0
SRGAP3	9901	broad.mit.edu	37	3	9055023	9055023	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:9055023C>T	uc003brf.1	-	17	2792	c.2116G>A	c.(2116-2118)GAA>AAA	p.E706K	SRGAP3_uc003brg.1_Missense_Mutation_p.E682K	NM_014850	NP_055665	O43295	SRGP2_HUMAN	SLIT-ROBO Rho GTPase activating protein 3	706					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding		SRGAP3/RAF1(4)	central_nervous_system(4)|skin(3)|urinary_tract(1)|breast(1)	9				OV - Ovarian serous cystadenocarcinoma(96;0.0563)		ATGCATTTTTCATACACAGGT	0.423			T	RAF1	pilocytic astrocytoma								21	31					0	0	0.014323	0	0
SRGAP3	9901	broad.mit.edu	37	3	9089102	9089102	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:9089102C>T	uc003brf.1	-	10	2057	c.1381G>A	c.(1381-1383)GAT>AAT	p.D461N	SRGAP3_uc003brg.1_Missense_Mutation_p.D461N|SRGAP3_uc003bri.1_RNA|SRGAP3_uc003brj.1_Missense_Mutation_p.D321N	NM_014850	NP_055665	O43295	SRGP2_HUMAN	SLIT-ROBO Rho GTPase activating protein 3	461					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding		SRGAP3/RAF1(4)	central_nervous_system(4)|skin(3)|urinary_tract(1)|breast(1)	9				OV - Ovarian serous cystadenocarcinoma(96;0.0563)		TTGAGTAAATCGTGCTTGGCC	0.547			T	RAF1	pilocytic astrocytoma								6	58					0	0	0.001984	0	0
LHFPL4	375323	broad.mit.edu	37	3	9543896	9543896	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:9543896C>T	uc003bry.2	-	4	1029	c.743G>A	c.(742-744)TGA>TAA	p.*248*		NM_198560	NP_940962	Q7Z7J7	LHPL4_HUMAN	lipoma HMGIC fusion partner-like 4	248						integral to membrane				ovary(2)|skin(1)	3	Medulloblastoma(99;0.227)					CCTGGCCTTTCAGGGTCCCTG	0.587													6	24					0	0	0.003080	0	0
LHFPL4	375323	broad.mit.edu	37	3	9547816	9547816	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:9547816C>T	uc003bry.2	-	3	764	c.478G>A	c.(478-480)GGG>AGG	p.G160R		NM_198560	NP_940962	Q7Z7J7	LHPL4_HUMAN	lipoma HMGIC fusion partner-like 4	160						integral to membrane				ovary(2)|skin(1)	3	Medulloblastoma(99;0.227)					GTCTTGGCCCCACACATGTCC	0.627													23	48					0	0	0.003330	0	0
IRAK2	3656	broad.mit.edu	37	3	10219700	10219700	+	Silent	SNP	G	A	A	rs140169922		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:10219700G>A	uc003bve.1	+	2	349	c.273G>A	c.(271-273)CTG>CTA	p.L91L		NM_001570	NP_001561	O43187	IRAK2_HUMAN	interleukin-1 receptor-associated kinase 2	91	Death.				activation of MAPK activity|I-kappaB kinase/NF-kappaB cascade|inflammatory response|innate immune response|interleukin-1-mediated signaling pathway|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of NF-kappaB transcription factor activity|positive regulation of NF-kappaB transcription factor activity|regulation of cytokine-mediated signaling pathway|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cell surface|cytosol|endosome membrane|plasma membrane	ATP binding|NF-kappaB-inducing kinase activity|protein heterodimerization activity|protein homodimerization activity	p.L91L(1)		lung(5)|breast(3)	8						AGATCATCCTGAACTGTGAGT	0.597													16	31					0	0	0.004007	0	0
IRAK2	3656	broad.mit.edu	37	3	10255055	10255055	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:10255055G>A	uc003bve.1	+	5	769	c.693G>A	c.(691-693)GGG>GGA	p.G231G		NM_001570	NP_001561	O43187	IRAK2_HUMAN	interleukin-1 receptor-associated kinase 2	231	Protein kinase.				activation of MAPK activity|I-kappaB kinase/NF-kappaB cascade|inflammatory response|innate immune response|interleukin-1-mediated signaling pathway|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of NF-kappaB transcription factor activity|positive regulation of NF-kappaB transcription factor activity|regulation of cytokine-mediated signaling pathway|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cell surface|cytosol|endosome membrane|plasma membrane	ATP binding|NF-kappaB-inducing kinase activity|protein heterodimerization activity|protein homodimerization activity			lung(5)|breast(3)	8						ACAGGCACGGGAAGCCATTCG	0.557													21	41					0	0	0.008871	0	0
IRAK2	3656	broad.mit.edu	37	3	10276308	10276308	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:10276308C>T	uc003bve.1	+	11	1514	c.1438C>T	c.(1438-1440)CTG>TTG	p.L480L		NM_001570	NP_001561	O43187	IRAK2_HUMAN	interleukin-1 receptor-associated kinase 2	480	Protein kinase.				activation of MAPK activity|I-kappaB kinase/NF-kappaB cascade|inflammatory response|innate immune response|interleukin-1-mediated signaling pathway|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of NF-kappaB transcription factor activity|positive regulation of NF-kappaB transcription factor activity|regulation of cytokine-mediated signaling pathway|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cell surface|cytosol|endosome membrane|plasma membrane	ATP binding|NF-kappaB-inducing kinase activity|protein heterodimerization activity|protein homodimerization activity			lung(5)|breast(3)	8						GGCTGCCTGCCTGTGCCTGCG	0.697													27	42					0	0	0.003271	0	0
ATP2B2	491	broad.mit.edu	37	3	10381990	10381990	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:10381990G>A	uc003bvt.2	-	21	3612	c.3173C>T	c.(3172-3174)CCA>CTA	p.P1058L	ATP2B2_uc003bvv.2_Missense_Mutation_p.P1013L|ATP2B2_uc003bvw.2_Missense_Mutation_p.P1013L|ATP2B2_uc010hdo.2_Missense_Mutation_p.P763L	NM_001001331	NP_001001331	Q01814	AT2B2_HUMAN	plasma membrane calcium ATPase 2 isoform 1	1058	Extracellular (Potential).				ATP biosynthetic process|cytosolic calcium ion homeostasis|platelet activation	cytosol|integral to membrane|plasma membrane	ATP binding|ATP binding|calcium ion binding|calcium-transporting ATPase activity|calcium-transporting ATPase activity|calmodulin binding|calmodulin binding|metal ion binding|PDZ domain binding|protein C-terminus binding			ovary(3)|skin(2)|central_nervous_system(1)	6						CAGCTGCAGTGGAGAGCAGCT	0.557													25	42					0	0	0.008361	0	0
SLC6A11	6538	broad.mit.edu	37	3	10974875	10974875	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:10974875C>T	uc003bvz.2	+	11	1444	c.1410C>T	c.(1408-1410)GCC>GCT	p.A470A		NM_014229	NP_055044	P48066	S6A11_HUMAN	solute carrier family 6 (neurotransmitter	470					neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity			skin(3)|ovary(1)	4				OV - Ovarian serous cystadenocarcinoma(96;0.229)		ACTCCTATGCCGCCAGTGGGA	0.592													31	182					0	0	0.010818	0	0
SLC6A1	6529	broad.mit.edu	37	3	11059648	11059648	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:11059648C>T	uc010hdq.2	+	4	769	c.358C>T	c.(358-360)CCT>TCT	p.P120S		NM_003042	NP_003033	P30531	SC6A1_HUMAN	solute carrier family 6 (neurotransmitter	120					neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity			ovary(1)|skin(1)	2		Ovarian(110;0.0392)		OV - Ovarian serous cystadenocarcinoma(96;0.00099)	Cocaine(DB00907)|Tiagabine(DB00906)	GAAGCTGGCTCCTATGTTCAA	0.602													44	100					0	0	0.014410	0	0
HRH1	3269	broad.mit.edu	37	3	11302062	11302062	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:11302062G>A	uc010hdr.2	+	2	1681	c.1339G>A	c.(1339-1341)GAA>AAA	p.E447K	HRH1_uc010hds.2_Missense_Mutation_p.E447K|HRH1_uc010hdt.2_Missense_Mutation_p.E447K|HRH1_uc003bwb.3_Missense_Mutation_p.E447K	NM_001098213	NP_001091683	P35367	HRH1_HUMAN	histamine receptor H1	447	Extracellular (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|inflammatory response	cytoplasm|integral to plasma membrane|nucleus	histamine receptor activity			large_intestine(1)|ovary(1)	2					Aceprometazine(DB01615)|Astemizole(DB00637)|Azatadine(DB00719)|Azelastine(DB00972)|Benzquinamide(DB00767)|Bepotastine(DB04890)|Bromodiphenhydramine(DB01237)|Brompheniramine(DB00835)|Buclizine(DB00354)|Carbinoxamine(DB00748)|Cetirizine(DB00341)|Chlophedianol(DB04837)|Chlorpheniramine(DB01114)|Chlorprothixene(DB01239)|Cinnarizine(DB00568)|Clemastine(DB00283)|Clozapine(DB00363)|Cyclizine(DB01176)|Cyproheptadine(DB00434)|Desipramine(DB01151)|Desloratadine(DB00967)|Dexbrompheniramine(DB00405)|Dimenhydrinate(DB00985)|Diphenhydramine(DB01075)|Diphenylpyraline(DB01146)|Doxepin(DB01142)|Doxylamine(DB00366)|Emedastine(DB01084)|Epinastine(DB00751)|Fexofenadine(DB00950)|Flunarizine(DB04841)|Histamine Phosphate(DB00667)|Hydroxyzine(DB00557)|Ketotifen(DB00920)|Levocabastine(DB01106)|Loratadine(DB00455)|Maprotiline(DB00934)|Meclizine(DB00737)|Mequitazine(DB01071)|Methdilazine(DB00902)|Methotrimeprazine(DB01403)|Mianserin(DB06148)|Mirtazapine(DB00370)|Nedocromil(DB00716)|Olanzapine(DB00334)|Olopatadine(DB00768)|Orphenadrine(DB01173)|Pemirolast(DB00885)|Phenindamine(DB01619)|Pheniramine(DB01620)|Prochlorperazine(DB00433)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Quetiapine(DB01224)|Risperidone(DB00734)|Terfenadine(DB00342)|Thiethylperazine(DB00372)|Trazodone(DB00656)|Trimeprazine(DB01246)|Tripelennamine(DB00792)|Triprolidine(DB00427)|Ziprasidone(DB00246)	CTGTTGCAATGAACATTTGCA	0.458													29	218					0	0	0.010818	0	0
ATG7	10533	broad.mit.edu	37	3	11389500	11389500	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:11389500C>T	uc003bwc.2	+	12	1392	c.1275C>T	c.(1273-1275)TTC>TTT	p.F425F	ATG7_uc003bwd.2_Silent_p.F425F|ATG7_uc011aum.1_Silent_p.F386F	NM_006395	NP_006386	O95352	ATG7_HUMAN	APG7 autophagy 7-like isoform a	425					autophagy|cellular membrane fusion|positive regulation of protein modification process|protein lipidation|protein transport	cytoplasm	APG12 activating enzyme activity|protein homodimerization activity|ubiquitin activating enzyme activity			central_nervous_system(1)	1						AGAAAATATTCCCCGGTGTGG	0.478													21	133					0	0	0.002780	0	0
SYN2	6854	broad.mit.edu	37	3	12208783	12208783	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:12208783C>T	uc003bwm.2	+	12	1194	c.1030C>T	c.(1030-1032)CTG>TTG	p.L344L	SYN2_uc003bwl.1_Silent_p.L344L|SYN2_uc003bwn.2_Silent_p.L18L	NM_133625	NP_598328	Q92777	SYN2_HUMAN	synapsin II isoform IIa	344					neurotransmitter secretion	synaptic vesicle	ATP binding|ligase activity			ovary(1)|central_nervous_system(1)	2						CTCTGCGATGCTGGAGCAGAT	0.522													55	158					0	0	0.014410	0	0
NUP210	23225	broad.mit.edu	37	3	13381426	13381426	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:13381426G>A	uc003bxv.1	-	25	3482	c.3399C>T	c.(3397-3399)ATC>ATT	p.I1133I		NM_024923	NP_079199	Q8TEM1	PO210_HUMAN	nucleoporin 210 precursor	1133	Lumenal (Probable).				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	endoplasmic reticulum membrane|nuclear membrane|nuclear pore				ovary(3)|large_intestine(3)|skin(3)|pancreas(1)|liver(1)	11	all_neural(104;0.187)					TGCCGTTCCCGATGGCGAGGC	0.478													29	134					0	0	0.010818	0	0
NUP210	23225	broad.mit.edu	37	3	13417834	13417834	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:13417834C>T	uc003bxv.1	-	10	1333	c.1250G>A	c.(1249-1251)GGA>GAA	p.G417E	NUP210_uc003bxx.2_Missense_Mutation_p.G89E	NM_024923	NP_079199	Q8TEM1	PO210_HUMAN	nucleoporin 210 precursor	417	Lumenal (Probable).				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	endoplasmic reticulum membrane|nuclear membrane|nuclear pore				ovary(3)|large_intestine(3)|skin(3)|pancreas(1)|liver(1)	11	all_neural(104;0.187)					GGCCGTCTGTCCCCTCTTTAG	0.572													23	44					0	0	0.012319	0	0
NUP210	23225	broad.mit.edu	37	3	13417924	13417924	+	Missense_Mutation	SNP	C	T	T	rs141201901		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:13417924C>T	uc003bxv.1	-	10	1243	c.1160G>A	c.(1159-1161)CGA>CAA	p.R387Q	NUP210_uc003bxx.2_Missense_Mutation_p.R59Q	NM_024923	NP_079199	Q8TEM1	PO210_HUMAN	nucleoporin 210 precursor	387	Lumenal (Probable).				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	endoplasmic reticulum membrane|nuclear membrane|nuclear pore				ovary(3)|large_intestine(3)|skin(3)|pancreas(1)|liver(1)	11	all_neural(104;0.187)					AGTTTCAATTCGGATGTTCTG	0.542													11	35					0	0	0.010729	0	0
GALNTL2	117248	broad.mit.edu	37	3	16216774	16216774	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:16216774C>T	uc003car.3	+	1	591	c.116C>T	c.(115-117)ACC>ATC	p.T39I	GALNTL2_uc003caq.3_Intron	NM_054110	NP_473451	Q8N3T1	GLTL2_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	39	Lumenal (Potential).					Golgi membrane|integral to membrane|transport vesicle	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			breast(1)	1						CCCCACCACACCCTGCACCAG	0.597													16	60					0	0	0.003163	0	0
GALNTL2	117248	broad.mit.edu	37	3	16254142	16254142	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:16254142C>T	uc003car.3	+	6	1739	c.1264C>T	c.(1264-1266)CAG>TAG	p.Q422*	GALNTL2_uc003caq.3_Nonsense_Mutation_p.Q155*	NM_054110	NP_473451	Q8N3T1	GLTL2_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	422	Lumenal (Potential).					Golgi membrane|integral to membrane|transport vesicle	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			breast(1)	1						CTACCAAAATCAGGATTCCCA	0.537													21	45					0	0	0.012319	0	0
RFTN1	23180	broad.mit.edu	37	3	16419226	16419226	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:16419226C>T	uc003cay.2	-	5	1107	c.825G>A	c.(823-825)GGG>GGA	p.G275G	RFTN1_uc010hes.2_Silent_p.G239G	NM_015150	NP_055965	Q14699	RFTN1_HUMAN	raft-linking protein	275						plasma membrane				ovary(3)|central_nervous_system(1)	4						CATACTTACTCCCTGAGAGTG	0.483													15	60					0	0	0.008871	0	0
PLCL2	23228	broad.mit.edu	37	3	17052024	17052024	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:17052024G>A	uc011awc.1	+	5	1267	c.1162G>A	c.(1162-1164)GAA>AAA	p.E388K	PLCL2_uc010het.1_Intron|PLCL2_uc011awd.1_Missense_Mutation_p.E270K	NM_001144382	NP_001137854	Q9UPR0	PLCL2_HUMAN	phospholipase C-like 2 isoform 1	396					intracellular signal transduction|lipid metabolic process	cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(2)|ovary(1)|lung(1)	4						AGAGGGTCAGGAAAAGGGCTG	0.403													16	47					0	0	0.003163	0	0
TBC1D5	9779	broad.mit.edu	37	3	17202633	17202633	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:17202633G>A	uc003cbf.2	-	22	3875	c.2210C>T	c.(2209-2211)CCT>CTT	p.P737L	TBC1D5_uc010heu.2_Missense_Mutation_p.P324L|TBC1D5_uc010hev.2_Missense_Mutation_p.P759L|TBC1D5_uc003cbe.2_Missense_Mutation_p.P737L	NM_014744	NP_055559	Q92609	TBCD5_HUMAN	TBC1 domain family, member 5 isoform b	737						intracellular	protein binding|Rab GTPase activator activity			ovary(1)	1						GGTGCGAAGAGGCTGGGCCTG	0.592													19	34					0	0	0.007413	0	0
SATB1	6304	broad.mit.edu	37	3	18391025	18391025	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:18391025C>T	uc003cbh.2	-	11	3664	c.1929G>A	c.(1927-1929)CAG>CAA	p.Q643Q	SATB1_uc003cbi.2_Silent_p.Q675Q|SATB1_uc003cbj.2_Silent_p.Q643Q	NM_002971	NP_002962	Q01826	SATB1_HUMAN	special AT-rich sequence binding protein 1	643					cellular component disassembly involved in apoptosis|interspecies interaction between organisms|negative regulation of transcription from RNA polymerase II promoter	nuclear matrix|PML body	double-stranded DNA binding|sequence-specific DNA binding			skin(2)|ovary(1)|lung(1)	4						GCCGGGTCTTCTGTCGGTTTT	0.592													24	68					0	0	0.003330	0	0
SATB1	6304	broad.mit.edu	37	3	18393507	18393508	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:18393507_18393508GG>AA	uc003cbh.2	-	10	3490_3491	c.1755_1756CC>TT	c.(1753-1758)ATCCAT>ATTTAT	p.H586Y	SATB1_uc003cbi.2_Missense_Mutation_p.H586Y|SATB1_uc003cbj.2_Missense_Mutation_p.H586Y	NM_002971	NP_002962	Q01826	SATB1_HUMAN	special AT-rich sequence binding protein 1	586					cellular component disassembly involved in apoptosis|interspecies interaction between organisms|negative regulation of transcription from RNA polymerase II promoter	nuclear matrix|PML body	double-stranded DNA binding|sequence-specific DNA binding			skin(2)|ovary(1)|lung(1)	4						GCTGGAACATGGATAATGTGGG	0.465													37	87					0	0	0.004672	0	0
KCNH8	131096	broad.mit.edu	37	3	19575008	19575008	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:19575008C>T	uc003cbk.1	+	16	2936	c.2741C>T	c.(2740-2742)TCT>TTT	p.S914F	KCNH8_uc010hex.1_Missense_Mutation_p.S375F	NM_144633	NP_653234	Q96L42	KCNH8_HUMAN	potassium voltage-gated channel, subfamily H,	914	Cytoplasmic (Potential).					integral to membrane	two-component sensor activity			lung(4)|ovary(1)	5						CACAGCACCTCTGTGTGTCCC	0.522													26	56					0	0	0.004656	0	0
THRB	7068	broad.mit.edu	37	3	24169111	24169111	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:24169111C>T	uc003ccx.3	-	10	1372	c.1023G>A	c.(1021-1023)CTG>CTA	p.L341L	THRB_uc010hfe.2_Silent_p.L341L|THRB_uc003ccy.3_Silent_p.L341L|THRB_uc003ccz.3_Silent_p.L336L	NM_001128176	NP_001121648	P10828	THB_HUMAN	thyroid hormone receptor, beta	341	Ligand-binding.|Interaction with NR2F6.		L -> P (in GTHR).		regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	enzyme binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|thyroid hormone receptor activity|transcription corepressor activity|zinc ion binding			skin(2)|pancreas(1)	3					Levothyroxine(DB00451)|Liothyronine(DB00279)	CCCCATTTTTCAGCTGGCCCC	0.537													20	83					0	0	0.010504	0	0
THRB	7068	broad.mit.edu	37	3	24231761	24231761	+	Silent	SNP	T	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:24231761T>G	uc003ccx.3	-	5	436	c.87A>C	c.(85-87)CTA>CTC	p.L29L	THRB_uc010hfe.2_Silent_p.L29L|THRB_uc003ccy.3_Silent_p.L29L|THRB_uc003ccz.3_Silent_p.L24L|THRB_uc003cdc.2_Silent_p.L24L|THRB_uc003cdd.2_Silent_p.L24L|THRB_uc003cde.1_Silent_p.L24L	NM_001128176	NP_001121648	P10828	THB_HUMAN	thyroid hormone receptor, beta	29	Modulating.				regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	enzyme binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|thyroid hormone receptor activity|transcription corepressor activity|zinc ion binding			skin(2)|pancreas(1)	3					Levothyroxine(DB00451)|Liothyronine(DB00279)	ACATTCCTACTAGCTTCCAGT	0.498													27	70					0	0	0.007291	0	0
NGLY1	55768	broad.mit.edu	37	3	25775392	25775392	+	Nonsense_Mutation	SNP	G	A	A	rs146140738	by1000genomes	TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:25775392G>A	uc003cdl.2	-	8	1339	c.1231C>T	c.(1231-1233)CGA>TGA	p.R411*	NGLY1_uc010hfg.2_Nonsense_Mutation_p.R393*|NGLY1_uc003cdm.2_Nonsense_Mutation_p.R411*|NGLY1_uc011awo.1_Nonsense_Mutation_p.R369*|NGLY1_uc003cdk.2_RNA	NM_018297	NP_060767	Q96IV0	NGLY1_HUMAN	N-glycanase 1 isoform 1	411					glycoprotein catabolic process	cytoplasm	metal ion binding|peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity|protein binding			breast(1)	1						ATAGTGTCTCGAAGTAATGCT	0.358													18	42					0	0	0.010504	0	0
LRRC3B	116135	broad.mit.edu	37	3	26751278	26751278	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:26751278C>T	uc003cdp.2	+	2	704	c.115C>T	c.(115-117)CTT>TTT	p.L39F	LRRC3B_uc003cdq.2_Missense_Mutation_p.L39F	NM_052953	NP_443185	Q96PB8	LRC3B_HUMAN	leucine rich repeat containing 3B precursor	39	LRRNT.					integral to membrane				pancreas(2)|ovary(1)|skin(1)	4						CAAGGGCTGTCTTTGTTCTTC	0.443													19	78					0	0	0.007413	0	0
NEK10	152110	broad.mit.edu	37	3	27216271	27216271	+	Silent	SNP	C	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:27216271C>A	uc010hfk.2	-	6	724	c.495G>T	c.(493-495)CTG>CTT	p.L165L	NEK10_uc003cds.1_Silent_p.L250L|NEK10_uc010hfj.2_Silent_p.L165L			Q6ZWH5	NEK10_HUMAN	RecName: Full=Serine/threonine-protein kinase Nek10;          EC=2.7.11.1; AltName: Full=NimA-related protein kinase 10;	853							ATP binding|metal ion binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(5)|stomach(2)|central_nervous_system(2)|lung(2)|skin(1)|pancreas(1)	13						GTTCACTTTTCAGGCTGGCTG	0.498													50	114					8.44121e-28	9.12928e-28	0.014410	1	0
GADL1	339896	broad.mit.edu	37	3	30842408	30842408	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:30842408C>T	uc003cep.2	-	12	1270	c.1223G>A	c.(1222-1224)AGA>AAA	p.R408K	GADL1_uc003ceq.1_Missense_Mutation_p.R408K	NM_207359	NP_997242	Q6ZQY3	GADL1_HUMAN	glutamate decarboxylase-like 1	408					carboxylic acid metabolic process		carboxy-lyase activity|pyridoxal phosphate binding				0					Pyridoxal Phosphate(DB00114)	ACGATTAACTCTTTCTTCAAG	0.308													17	52					0	0	0.010504	0	0
CMTM8	152189	broad.mit.edu	37	3	32409428	32409429	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:32409428_32409429CC>TT	uc003cex.2	+	3	680_681	c.386_387CC>TT	c.(385-387)TCC>TTT	p.S129F	CMTM8_uc010hfu.2_Missense_Mutation_p.S71F	NM_178868	NP_849199	Q8IZV2	CKLF8_HUMAN	CKLF-like MARVEL transmembrane domain containing	129	MARVEL.				chemotaxis	extracellular space|integral to membrane	cytokine activity				0						GATGCATCTTCCGTCTCCCCTG	0.589													19	45					0	0	0.004672	0	0
CMTM7	112616	broad.mit.edu	37	3	32483433	32483433	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:32483433G>A	uc003cey.1	+	2	497	c.261G>A	c.(259-261)ATG>ATA	p.M87I	CMTM7_uc003cez.1_Missense_Mutation_p.M87I	NM_138410	NP_612419	Q96FZ5	CKLF7_HUMAN	CKLF-like MARVEL transmembrane domain containing	87	Helical; (Potential).|MARVEL.				chemotaxis	extracellular space|integral to membrane	cytokine activity				0						ACTTGATAATGATCCTCGCCT	0.557													40	83					0	0	0.007835	0	0
CNOT10	25904	broad.mit.edu	37	3	32769172	32769172	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:32769172C>T	uc003cfc.1	+	10	1280	c.1025C>T	c.(1024-1026)TCA>TTA	p.S342L	CNOT10_uc011axi.1_Missense_Mutation_p.S114L|CNOT10_uc003cfd.1_Missense_Mutation_p.S341L|CNOT10_uc003cfe.1_Missense_Mutation_p.S342L|CNOT10_uc010hfv.1_RNA|CNOT10_uc011axj.1_Missense_Mutation_p.S402L|CNOT10_uc010hfw.1_Missense_Mutation_p.S37L	NM_015442	NP_056257	Q9H9A5	CNOTA_HUMAN	CCR4-NOT transcription complex, subunit 10	342					nuclear-transcribed mRNA poly(A) tail shortening	cytosol	protein binding			central_nervous_system(1)|skin(1)	2						AAAAAATTTTCAGGAAGACCC	0.338													11	32					0	0	0.008291	0	0
TRIM71	131405	broad.mit.edu	37	3	32927435	32927435	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:32927435G>A	uc003cff.2	+	3	1093	c.1030G>A	c.(1030-1032)GAG>AAG	p.E344K		NM_001039111	NP_001034200	Q2Q1W2	LIN41_HUMAN	tripartite motif-containing 71	344					multicellular organismal development	cytoplasm	zinc ion binding			ovary(2)|large_intestine(1)	3						GCTGAGCATCGAGCAGGCCCA	0.498													29	33					0	0	0.003755	0	0
TMPPE	643853	broad.mit.edu	37	3	33135527	33135527	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:33135527G>A	uc003cfk.2	-	2	352	c.161C>T	c.(160-162)TCG>TTG	p.S54L	GLB1_uc003cfh.1_Intron|GLB1_uc003cfi.1_Intron|GLB1_uc003cfj.1_Intron|GLB1_uc011axk.1_Intron|TMPPE_uc011axl.1_Intron	NM_001039770	NP_001034859	Q6ZT21	TMPPE_HUMAN	transmembrane protein with	54	Helical; (Potential).					integral to membrane	metal ion binding				0						GAGCAAGAGCGAGTTGACAAA	0.572													6	18					0	0	0.003080	0	0
ARPP21	10777	broad.mit.edu	37	3	35750488	35750488	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:35750488G>A	uc003cgb.2	+	11	1087	c.823G>A	c.(823-825)GAC>AAC	p.D275N	ARPP21_uc003cga.2_Intron|ARPP21_uc011axy.1_Intron|ARPP21_uc003cgf.2_Intron	NM_016300	NP_057384	Q9UBL0	ARP21_HUMAN	cyclic AMP-regulated phosphoprotein, 21 kD	275						cytoplasm	nucleic acid binding			ovary(2)|skin(1)	3						ATTTAGAGATGACAGACGAAG	0.383													4	14					0	0	0.000602	0	0
ARPP21	10777	broad.mit.edu	37	3	35770852	35770852	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:35770852C>T	uc003cgb.2	+	15	1547	c.1283C>T	c.(1282-1284)CCT>CTT	p.P428L	ARPP21_uc003cga.2_Missense_Mutation_p.P374L|ARPP21_uc011axy.1_Missense_Mutation_p.P394L|ARPP21_uc003cgf.2_Missense_Mutation_p.P229L|ARPP21_uc003cgg.2_5'UTR	NM_016300	NP_057384	Q9UBL0	ARP21_HUMAN	cyclic AMP-regulated phosphoprotein, 21 kD	428						cytoplasm	nucleic acid binding			ovary(2)|skin(1)	3						ACCCATCCACCTCTCCAGAGC	0.567													31	57					0	0	0.013726	0	0
ARPP21	10777	broad.mit.edu	37	3	35833970	35833970	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:35833970G>A	uc003cgb.2	+	19	2393	c.2129G>A	c.(2128-2130)GGA>GAA	p.G710E	ARPP21_uc003cga.2_Missense_Mutation_p.G691E|ARPP21_uc011axy.1_Missense_Mutation_p.G711E|ARPP21_uc003cgf.2_Missense_Mutation_p.G546E|ARPP21_uc003cgg.2_Missense_Mutation_p.G233E	NM_016300	NP_057384	Q9UBL0	ARP21_HUMAN	cyclic AMP-regulated phosphoprotein, 21 kD	710	Gln-rich.					cytoplasm	nucleic acid binding			ovary(2)|skin(1)	3						AACCAACAAGGAACTCCGGTG	0.463													18	42					0	0	0.006122	0	0
STAC	6769	broad.mit.edu	37	3	36545914	36545914	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:36545914G>A	uc003cgh.1	+	7	835	c.796G>A	c.(796-798)GAT>AAT	p.D266N	STAC_uc010hgd.1_RNA|STAC_uc011aya.1_Missense_Mutation_p.D205N	NM_003149	NP_003140	Q99469	STAC_HUMAN	SH3 and cysteine rich domain	266					intracellular signal transduction	cytoplasm|soluble fraction	metal ion binding			skin(2)|ovary(1)|pancreas(1)	4						TGGCACTGATGATTTCAGAGA	0.363													17	24					0	0	0.012319	0	0
DCLK3	85443	broad.mit.edu	37	3	36759619	36759619	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:36759619G>A	uc003cgi.2	-	4	2126	c.1635C>T	c.(1633-1635)ATC>ATT	p.I545I		NM_033403	NP_208382	Q9C098	DCLK3_HUMAN	doublecortin-like kinase 3	545	Protein kinase.					cytoplasm|nucleus	ATP binding|protein serine/threonine kinase activity			lung(3)|large_intestine(2)|breast(1)|skin(1)|ovary(1)|kidney(1)	9						CACACAGCAGGATATAGAGGA	0.572													48	89					0	0	0.014410	0	0
DCLK3	85443	broad.mit.edu	37	3	36779376	36779376	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:36779376C>T	uc003cgi.2	-	2	1266	c.775G>A	c.(775-777)GAG>AAG	p.E259K		NM_033403	NP_208382	Q9C098	DCLK3_HUMAN	doublecortin-like kinase 3	259						cytoplasm|nucleus	ATP binding|protein serine/threonine kinase activity			lung(3)|large_intestine(2)|breast(1)|skin(1)|ovary(1)|kidney(1)	9						TTCTTCACCTCCCTCAGCCCC	0.602													43	91					0	0	0.008740	0	0
TRANK1	9881	broad.mit.edu	37	3	36873841	36873841	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:36873841C>T	uc003cgj.2	-	12	5753	c.5451G>A	c.(5449-5451)GAG>GAA	p.E1817E		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	2367					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						CAATGCAATTCTCCAGAAGCC	0.453													33	61					0	0	0.003755	0	0
TRANK1	9881	broad.mit.edu	37	3	36874009	36874009	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:36874009C>T	uc003cgj.2	-	12	5585	c.5283G>A	c.(5281-5283)GAG>GAA	p.E1761E		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	2311	Potential.				DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						TGTAGTTGTCCTCCTCCTGGT	0.517													35	72					0	0	0.003755	0	0
TRANK1	9881	broad.mit.edu	37	3	36874402	36874402	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:36874402C>T	uc003cgj.2	-	12	5192	c.4890G>A	c.(4888-4890)TCG>TCA	p.S1630S		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	2180					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						AGTTCATTTTCGACTGAACTA	0.378													7	17					0	0	0.001984	0	0
TRANK1	9881	broad.mit.edu	37	3	36874636	36874636	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:36874636C>T	uc003cgj.2	-	12	4958	c.4656G>A	c.(4654-4656)TTG>TTA	p.L1552L		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	2102					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						CTCTCAAGTTCAAATCCAGGT	0.393													9	12					0	0	0.006214	0	0
TRANK1	9881	broad.mit.edu	37	3	36880169	36880169	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:36880169C>T	uc003cgj.2	-	9	3839	c.3537G>A	c.(3535-3537)GAG>GAA	p.E1179E		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	1729	TPR 3.				DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						ACTTCTCCTTCTCAAATGCAC	0.483													7	19					0	0	0.006214	0	0
TRANK1	9881	broad.mit.edu	37	3	36893771	36893771	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:36893771G>A	uc003cgj.2	-	4	3135	c.2833C>T	c.(2833-2835)CGC>TGC	p.R945C		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	1495					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						CTTGGAAGGCGATCAAAAGAT	0.428													6	11					0	0	0.001168	0	0
TRANK1	9881	broad.mit.edu	37	3	36898104	36898105	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:36898104_36898105CC>AT	uc003cgj.2	-	3	1628_1629	c.1326_1327GG>AT	c.(1324-1329)ATGGCC>ATATCC	p.442_443MA>IS		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	992_993					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						ATGTTAAAGGCCATGTTGGTGC	0.535													57	143					0	0	0.004672	0	0
DLEC1	9940	broad.mit.edu	37	3	38134316	38134316	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:38134316G>A	uc003cho.1	+	11	1722	c.1701G>A	c.(1699-1701)GAG>GAA	p.E567E	DLEC1_uc003chp.1_Silent_p.E567E|DLEC1_uc010hgv.1_Silent_p.E567E|DLEC1_uc003chr.1_5'Flank|DLEC1_uc003chq.1_Intron	NM_007335	NP_031361	Q9Y238	DLEC1_HUMAN	deleted in lung and esophageal cancer 1 isoform	567					negative regulation of cell proliferation	cytoplasm				ovary(2)|pancreas(2)|central_nervous_system(2)|skin(2)|breast(1)	9				KIRC - Kidney renal clear cell carcinoma(284;0.0664)|Kidney(284;0.0827)		GAAAGGCAGAGCAGACCTTCA	0.572													28	66					0	0	0.008361	0	0
SLC22A14	9389	broad.mit.edu	37	3	38348031	38348031	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:38348031G>A	uc010hhc.1	+	2	556	c.514G>A	c.(514-516)GAG>AAG	p.E172K	SLC22A14_uc003cia.2_Missense_Mutation_p.E172K|SLC22A14_uc003cib.2_Missense_Mutation_p.E172K|SLC22A14_uc011ayo.1_RNA	NM_004803	NP_004794	Q9Y267	S22AE_HUMAN	organic cation transporter like 4	172	Extracellular (Potential).					integral to plasma membrane	organic cation transmembrane transporter activity				0				KIRC - Kidney renal clear cell carcinoma(284;0.0554)|Kidney(284;0.0696)		GCTGATCAATGAGGTATGTCT	0.383													30	53					0	0	0.012213	0	0
SLC22A14	9389	broad.mit.edu	37	3	38355398	38355398	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:38355398C>T	uc010hhc.1	+	8	1386	c.1344C>T	c.(1342-1344)ATC>ATT	p.I448I	SLC22A14_uc003cib.2_Silent_p.I448I|SLC22A14_uc011ayo.1_RNA	NM_004803	NP_004794	Q9Y267	S22AE_HUMAN	organic cation transporter like 4	448	Helical; (Potential).					integral to plasma membrane	organic cation transmembrane transporter activity				0				KIRC - Kidney renal clear cell carcinoma(284;0.0554)|Kidney(284;0.0696)		TCCAAGCCATCATCTGGTGCT	0.592													24	66					0	0	0.004656	0	0
SCN5A	6331	broad.mit.edu	37	3	38640490	38640490	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:38640490G>A	uc003cio.2	-	13	2136	c.1942C>T	c.(1942-1944)CCG>TCG	p.P648S	SCN5A_uc003cin.2_Missense_Mutation_p.P648S|SCN5A_uc003cil.3_Missense_Mutation_p.P648S|SCN5A_uc010hhi.2_Missense_Mutation_p.P648S|SCN5A_uc010hhk.2_Missense_Mutation_p.P648S|SCN5A_uc011ayr.1_Missense_Mutation_p.P648S|SCN5A_uc010hhj.1_Missense_Mutation_p.P259S	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	648					blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	TCTACACACGGAGCCTGGGAG	0.647													23	43					0	0	0.012319	0	0
SCN5A	6331	broad.mit.edu	37	3	38646304	38646304	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:38646304C>T	uc003cio.2	-	11	1628	c.1434G>A	c.(1432-1434)AGG>AGA	p.R478R	SCN5A_uc003cin.2_Silent_p.R478R|SCN5A_uc003cil.3_Silent_p.R478R|SCN5A_uc010hhi.2_Silent_p.R478R|SCN5A_uc010hhk.2_Silent_p.R478R|SCN5A_uc011ayr.1_Silent_p.R478R|SCN5A_uc010hhj.1_Silent_p.R89R	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	478					blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	TCCGTTTTCTCCTCTTGCTTC	0.557													6	18					0	0	0.001168	0	0
SCN5A	6331	broad.mit.edu	37	3	38647622	38647622	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:38647622C>T	uc003cio.2	-	10	1352	c.1158G>A	c.(1156-1158)GGG>GGA	p.G386G	SCN5A_uc003cin.2_Silent_p.G386G|SCN5A_uc003cil.3_Silent_p.G386G|SCN5A_uc010hhi.2_Silent_p.G386G|SCN5A_uc010hhk.2_Silent_p.G386G|SCN5A_uc011ayr.1_Silent_p.G386G|SCN5A_uc010hhj.1_5'UTR	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	386					blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	TGTAGATCTTCCCTGCGGACC	0.557													17	29					0	0	0.010504	0	0
SCN5A	6331	broad.mit.edu	37	3	38663953	38663953	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:38663953G>A	uc003cio.2	-	4	614	c.420C>T	c.(418-420)ACC>ACT	p.T140T	SCN5A_uc003cin.2_Silent_p.T140T|SCN5A_uc003cil.3_Silent_p.T140T|SCN5A_uc010hhi.2_Silent_p.T140T|SCN5A_uc010hhk.2_Silent_p.T140T|SCN5A_uc011ayr.1_Silent_p.T140T|SCN5A_uc010hhl.1_Silent_p.T6T	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	140	Helical; Name=S1 of repeat I; (Potential).				blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	TGGTGAGGATGGTGCACATGA	0.627													3	7					0	0	0.000602	0	0
SCN10A	6336	broad.mit.edu	37	3	38739252	38739252	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:38739252G>A	uc003ciq.2	-	27	5459	c.5459C>T	c.(5458-5460)TCT>TTT	p.S1820F		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	1820					sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	TGCCTTCAGAGAATCCAACTC	0.443													36	36					0	0	0.004289	0	0
SCN10A	6336	broad.mit.edu	37	3	38760147	38760147	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:38760147C>T	uc003ciq.2	-	20	3678	c.3678G>A	c.(3676-3678)GTG>GTA	p.V1226V		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	1226	III.|Helical; Name=S3 of repeat III; (Potential).				sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	CACTCACATTCACAATGAGGA	0.532													15	30					0	0	0.004990	0	0
SCN11A	11280	broad.mit.edu	37	3	38889091	38889091	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:38889091C>T	uc011ays.1	-	26	4669	c.4470G>A	c.(4468-4470)CTG>CTA	p.L1490L		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	1490	IV.				response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	GCGACATCATCAGAGCAAAGA	0.483													14	25					0	0	0.002450	0	0
SCN11A	11280	broad.mit.edu	37	3	38961472	38961472	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:38961472C>T	uc011ays.1	-	7	1112	c.913G>A	c.(913-915)GAA>AAA	p.E305K		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	305	I.				response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	GGTGAATTTTCTTTCTTTTCA	0.338													18	37					0	0	0.010504	0	0
SCN11A	11280	broad.mit.edu	37	3	38961481	38961481	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:38961481C>T	uc011ays.1	-	7	1103	c.904G>A	c.(904-906)GAA>AAA	p.E302K		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	302	I.				response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	TCTTTCTTTTCAAAGCAATGG	0.333													15	36					0	0	0.004990	0	0
SCN11A	11280	broad.mit.edu	37	3	38991643	38991643	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:38991643G>A	uc011ays.1	-	1	410	c.211C>T	c.(211-213)CGT>TGT	p.R71C		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	71					response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	ATGAGCTCACGAGGAATGTCG	0.443													29	119					0	0	0.010818	0	0
CCBP2	1238	broad.mit.edu	37	3	42906396	42906396	+	Silent	SNP	C	T	T	rs146152018		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:42906396C>T	uc003cme.2	+	3	581	c.402C>T	c.(400-402)TTC>TTT	p.F134F	CCBP2_uc003cmd.1_Intron|CCBP2_uc003cmf.2_Silent_p.F134F|CCBP2_uc003cmg.2_Intron|CYP8B1_uc010hif.2_Intron	NM_001296	NP_001287	O00590	CCBP2_HUMAN	chemokine binding protein 2	134	Helical; Name=3; (Potential).				chemotaxis|immune response|multicellular organismal development	integral to plasma membrane	C-X-C chemokine receptor activity	p.F134F(1)		lung(4)|skin(1)	5				KIRC - Kidney renal clear cell carcinoma(284;0.241)		GCATCTTTTTCATTAGCTGCA	0.517													34	129					0	0	0.007835	0	0
CYP8B1	1582	broad.mit.edu	37	3	42916031	42916031	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:42916031G>A	uc003cmh.2	-	1	1603	c.1278C>T	c.(1276-1278)ATC>ATT	p.I426I	CCBP2_uc003cmd.1_Intron|CCBP2_uc003cmg.2_Intron|CYP8B1_uc010hif.2_Silent_p.I426I	NM_004391	NP_004382	Q9UNU6	CP8B1_HUMAN	cytochrome P450, family 8, subfamily B,	426					bile acid biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	7alpha-hydroxycholest-4-en-3-one 12alpha-hydroxylase activity|electron carrier activity|heme binding|oxygen binding|sterol 12-alpha-hydroxylase activity			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.213)|Kidney(284;0.249)		TGTAGTGGTGGATCTTCTTGC	0.542													25	95					0	0	0.002780	0	0
CYP8B1	1582	broad.mit.edu	37	3	42916478	42916478	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:42916478G>A	uc003cmh.2	-	1	1156	c.831C>T	c.(829-831)TTC>TTT	p.F277F	CCBP2_uc003cmd.1_Intron|CCBP2_uc003cmg.2_Intron|CYP8B1_uc010hif.2_Silent_p.F277F	NM_004391	NP_004382	Q9UNU6	CP8B1_HUMAN	cytochrome P450, family 8, subfamily B,	277					bile acid biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	7alpha-hydroxycholest-4-en-3-one 12alpha-hydroxylase activity|electron carrier activity|heme binding|oxygen binding|sterol 12-alpha-hydroxylase activity			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.213)|Kidney(284;0.249)		AGAGCATCATGAAGTTGAACT	0.582													15	11					0	0	0.004007	0	0
SNRK	54861	broad.mit.edu	37	3	43388867	43388868	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:43388867_43388868CC>TT	uc003cms.3	+	7	1448_1449	c.1116_1117CC>TT	c.(1114-1119)GACCTT>GATTTT	p.L373F	SNRK_uc003cmt.3_Missense_Mutation_p.L373F|SNRK_uc010hik.2_Missense_Mutation_p.L373F|SNRK_uc011azr.1_Missense_Mutation_p.L167F	NM_017719	NP_060189	Q9NRH2	SNRK_HUMAN	SNF related kinase	373					myeloid cell differentiation	nucleus	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			ovary(3)|stomach(1)|breast(1)|skin(1)	6				KIRC - Kidney renal clear cell carcinoma(284;0.0636)|Kidney(284;0.0792)		TACCCCAGGACCTTGAGGATGA	0.5													30	131					0	0	0.004672	0	0
SNRK	54861	broad.mit.edu	37	3	43389194	43389194	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:43389194G>A	uc003cms.3	+	7	1775	c.1443G>A	c.(1441-1443)AAG>AAA	p.K481K	SNRK_uc003cmt.3_Silent_p.K481K|SNRK_uc010hik.2_Silent_p.K481K|SNRK_uc011azr.1_Silent_p.K275K	NM_017719	NP_060189	Q9NRH2	SNRK_HUMAN	SNF related kinase	481					myeloid cell differentiation	nucleus	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			ovary(3)|stomach(1)|breast(1)|skin(1)	6				KIRC - Kidney renal clear cell carcinoma(284;0.0636)|Kidney(284;0.0792)		CATCCAGGAAGAGTGCGCCCG	0.502													37	79					0	0	0.010771	0	0
ZNF445	353274	broad.mit.edu	37	3	44488121	44488121	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:44488121G>A	uc003cnf.2	-	8	3390	c.3042C>T	c.(3040-3042)ACC>ACT	p.T1014T	ZNF445_uc011azv.1_Silent_p.T1002T|ZNF445_uc011azw.1_Silent_p.T1014T	NM_181489	NP_852466	P59923	ZN445_HUMAN	zinc finger protein 445	1014	C2H2-type 14.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(197;0.0514)|Kidney(197;0.0646)		ACCACCTGAAGGTCTTTCCAC	0.478													22	53					0	0	0.014323	0	0
ZNF167	55888	broad.mit.edu	37	3	44612818	44612818	+	Missense_Mutation	SNP	G	A	A	rs151170690		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:44612818G>A	uc010hin.2	+	6	2604	c.2216G>A	c.(2215-2217)CGA>CAA	p.R739Q	ZNF167_uc003cni.2_Intron|ZNF167_uc010hio.2_Intron|ZNF167_uc003cnj.2_Missense_Mutation_p.R739Q|ZNF167_uc003cnk.2_Intron	NM_018651	NP_061121	Q9P0L1	ZN167_HUMAN	zinc finger protein 167 isoform 1	739	C2H2-type 13.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(197;0.0486)|Kidney(197;0.0609)		CACCACCAGCGAACTCACACT	0.458													21	47					0	0	0.014323	0	0
ZNF501	115560	broad.mit.edu	37	3	44776090	44776090	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:44776090C>T	uc003cnu.1	+	3	578	c.177C>T	c.(175-177)TTC>TTT	p.F59F	ZNF501_uc003cnv.1_Silent_p.F59F	NM_145044	NP_659481	Q96CX3	ZN501_HUMAN	zinc finger protein 501	59	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00843)|KIRC - Kidney renal clear cell carcinoma(197;0.0463)|Kidney(197;0.0579)		GAAGTTGTTTCCGTAAACAGT	0.398													6	41					0	0	0.001168	0	0
KIF15	56992	broad.mit.edu	37	3	44852408	44852408	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:44852408G>A	uc003cnx.3	+	17	2191	c.2042G>A	c.(2041-2043)GGA>GAA	p.G681E	KIF15_uc010hiq.2_Missense_Mutation_p.G584E|KIF15_uc003cny.1_Missense_Mutation_p.G316E	NM_020242	NP_064627	Q9NS87	KIF15_HUMAN	kinesin family member 15	681	Potential.				blood coagulation|cell proliferation|microtubule-based movement|mitosis	centrosome|cytosol|microtubule|plus-end kinesin complex|spindle	ATP binding|DNA binding|microtubule motor activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.0099)|KIRC - Kidney renal clear cell carcinoma(197;0.0564)|Kidney(197;0.0707)		CCTGAAATGGGAAGCTTTGGC	0.383													28	39					0	0	0.005443	0	0
TGM4	7047	broad.mit.edu	37	3	44943362	44943362	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:44943362G>A	uc003coc.3	+	8	983	c.910G>A	c.(910-912)GTG>ATG	p.V304M		NM_003241	NP_003232	P49221	TGM4_HUMAN	transglutaminase 4 (prostate)	304					peptide cross-linking|protein polyamination		acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.00963)|KIRC - Kidney renal clear cell carcinoma(197;0.0546)|Kidney(197;0.0686)	L-Glutamine(DB00130)	GAACCTCACGGTGGACACCTA	0.542													8	29					0	0	0.003080	0	0
TGM4	7047	broad.mit.edu	37	3	44945376	44945376	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:44945376G>A	uc003coc.3	+	9	1045	c.972G>A	c.(970-972)TGG>TGA	p.W324*		NM_003241	NP_003232	P49221	TGM4_HUMAN	transglutaminase 4 (prostate)	324					peptide cross-linking|protein polyamination		acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.00963)|KIRC - Kidney renal clear cell carcinoma(197;0.0546)|Kidney(197;0.0686)	L-Glutamine(DB00130)	TTTGCGGCAGGAATTTCCATG	0.597													52	97					0	0	0.014410	0	0
CDCP1	64866	broad.mit.edu	37	3	45127460	45127460	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:45127460C>T	uc003com.2	-	9	2316	c.2181G>A	c.(2179-2181)AAG>AAA	p.K727K		NM_022842	NP_073753	Q9H5V8	CDCP1_HUMAN	CUB domain-containing protein 1 isoform 1	727	Cytoplasmic (Potential).					extracellular region|integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.00928)|KIRC - Kidney renal clear cell carcinoma(197;0.0519)|Kidney(197;0.0651)		AGTCATTGTCCTTTCGCCCTT	0.502													32	198					0	0	0.004878	0	0
XCR1	2829	broad.mit.edu	37	3	46063217	46063217	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:46063217G>A	uc003cpe.2	-	3	447	c.223C>T	c.(223-225)CTC>TTC	p.L75F	uc003cpd.1_5'Flank|XCR1_uc003cpf.2_Missense_Mutation_p.L75F	NM_005283	NP_005274	P46094	XCR1_HUMAN	XC chemokine receptor 1	75	Helical; Name=2; (Potential).				chemotaxis|G-protein signaling, coupled to cyclic nucleotide second messenger|inflammatory response	integral to plasma membrane	chemokine receptor activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.00113)|KIRC - Kidney renal clear cell carcinoma(197;0.0172)|Kidney(197;0.0203)		AGGTCTGAGAGGCACAGGTTG	0.557													17	23					0	0	0.004007	0	0
CCR2	729230	broad.mit.edu	37	3	46399939	46399939	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:46399939C>T	uc003cpn.3	+	2	1406	c.921C>T	c.(919-921)TTC>TTT	p.F307F	CCR2_uc003cpm.3_Silent_p.F307F	NM_001123041	NP_001116513	P41597	CCR2_HUMAN	chemokine (C-C motif) receptor 2 isoform A	307	Helical; Name=7; (Potential).				astrocyte cell migration|blood vessel remodeling|cellular defense response|chemokine-mediated signaling pathway|dendritic cell chemotaxis|elevation of cytosolic calcium ion concentration|immune response|inflammatory response|interspecies interaction between organisms|JAK-STAT cascade|monocyte extravasation|negative regulation of adenylate cyclase activity|negative regulation of angiogenesis|negative regulation of eosinophil degranulation|negative regulation of type 2 immune response|positive regulation of alpha-beta T cell proliferation|positive regulation of immune complex clearance by monocytes and macrophages|positive regulation of inflammatory response|positive regulation of interferon-gamma production|positive regulation of interleukin-2 production|positive regulation of monocyte chemotaxis|positive regulation of T cell chemotaxis|positive regulation of T cell extravasation|positive regulation of T-helper 1 type immune response|positive regulation of tumor necrosis factor biosynthetic process|regulation of vascular endothelial growth factor production|T-helper 17 cell chemotaxis	cytosol|dendrite|integral to plasma membrane|perikaryon|perinuclear region of cytoplasm|soluble fraction	C-C chemokine receptor activity|CCR2 chemokine receptor binding|protein homodimerization activity	p.F307F(1)		lung(1)|breast(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.00114)|KIRC - Kidney renal clear cell carcinoma(197;0.0174)|Kidney(197;0.0206)		TCTATGCCTTCGTTGGGGAGA	0.498													45	77					0	0	0.014410	0	0
CCR5	1234	broad.mit.edu	37	3	46414700	46414700	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:46414700C>T	uc003cpo.3	+	3	429	c.307C>T	c.(307-309)CTC>TTC	p.L103F	CCR5_uc010hjd.2_Missense_Mutation_p.L103F	NM_001100168	NP_001093638	P51681	CCR5_HUMAN	chemokine (C-C motif) receptor 5	103	Helical; Name=3; (Potential).				cell-cell signaling|cellular defense response|dendritic cell chemotaxis|elevation of cytosolic calcium ion concentration|entry into host cell|immune response|inflammatory response|initiation of viral infection	endosome|external side of plasma membrane|integral to plasma membrane	actin binding|C-C chemokine receptor activity|coreceptor activity|phosphatidylinositol phospholipase C activity			lung(4)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6				BRCA - Breast invasive adenocarcinoma(193;0.00112)|KIRC - Kidney renal clear cell carcinoma(197;0.017)|Kidney(197;0.02)	Maraviroc(DB04835)	AATGTGTCAACTCTTGACAGG	0.488													59	170					0	0	0.014410	0	0
ALS2CL	259173	broad.mit.edu	37	3	46712521	46712521	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:46712521T>C	uc003cqa.1	-	26	3005	c.2815A>G	c.(2815-2817)AGG>GGG	p.R939G	ALS2CL_uc003cpx.1_Missense_Mutation_p.R286G|ALS2CL_uc003cpy.1_RNA|ALS2CL_uc003cpz.1_Missense_Mutation_p.R454G|ALS2CL_uc003cqb.1_Missense_Mutation_p.R939G|ALS2CL_uc003cqc.1_RNA	NM_147129	NP_667340	Q60I27	AL2CL_HUMAN	ALS2 C-terminal like isoform 1	939	VPS9.				endosome organization|regulation of Rho protein signal transduction		GTPase activator activity|identical protein binding|Rho guanyl-nucleotide exchange factor activity			breast(2)|central_nervous_system(2)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(193;0.000726)|KIRC - Kidney renal clear cell carcinoma(197;0.0171)|Kidney(197;0.0202)		CGGTGCAGCCTCATGTCTTCT	0.587													3	136					0	0	0.009096	0	0
PRSS45	377047	broad.mit.edu	37	3	46785598	46785598	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:46785598G>A	uc010hjl.2	-	2	146	c.146C>T	c.(145-147)TCC>TTC	p.S49F	PRSS45_uc011bam.1_RNA	NM_199183	NP_954652	Q7RTY3	PRS45_HUMAN	testis serine protease 5	49	Peptidase S1.				proteolysis		serine-type endopeptidase activity				0						CTGCAGCTTGGAGGTGCCAAG	0.582													5	4					0	0	0.001168	0	0
KIF9	64147	broad.mit.edu	37	3	47286411	47286411	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:47286411C>T	uc010hjp.2	-	16	1988	c.1384G>A	c.(1384-1386)GGG>AGG	p.G462R	KIF9_uc003cqx.2_Missense_Mutation_p.G462R|KIF9_uc003cqy.2_Missense_Mutation_p.G462R|KIF9_uc011bat.1_RNA	NM_001134878	NP_001128350	Q9HAQ2	KIF9_HUMAN	kinesin family member 9 isoform 2	462					blood coagulation|microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(1)	1		Acute lymphoblastic leukemia(5;0.164)		BRCA - Breast invasive adenocarcinoma(193;0.000284)|KIRC - Kidney renal clear cell carcinoma(197;0.00609)|Kidney(197;0.007)		TCCACAAGCCCCGCCTACATA	0.542													13	28					0	0	0.002450	0	0
DHX30	22907	broad.mit.edu	37	3	47887831	47887831	+	Silent	SNP	G	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:47887831G>C	uc003cru.2	+	11	1695	c.1269G>C	c.(1267-1269)CGG>CGC	p.R423R	DHX30_uc003crt.2_Silent_p.R384R	NM_138615	NP_619520	Q7L2E3	DHX30_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 30	423						mitochondrial nucleoid	ATP binding|ATP-dependent helicase activity|protein binding|RNA binding			ovary(2)|skin(2)	4				BRCA - Breast invasive adenocarcinoma(193;0.000696)|KIRC - Kidney renal clear cell carcinoma(197;0.00609)|Kidney(197;0.007)		TGTGGCGGCGGCGAGGGCCGG	0.632													37	49					0	0	0.004878	0	0
CDC25A	993	broad.mit.edu	37	3	48207191	48207191	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:48207191G>A	uc003csh.1	-	12	1490	c.1126C>T	c.(1126-1128)CTC>TTC	p.L376F	CDC25A_uc003csi.1_Missense_Mutation_p.L336F	NM_001789	NP_001780	P30304	MPIP1_HUMAN	cell division cycle 25A isoform a	376	Rhodanese.				cell cycle checkpoint|cell division|cell proliferation|cellular response to UV|DNA replication|G1/S transition of mitotic cell cycle|G2/M transition of mitotic cell cycle|mitosis|regulation of cyclin-dependent protein kinase activity|S phase of mitotic cell cycle	cytosol|nucleoplasm	protein binding|protein tyrosine phosphatase activity			lung(3)|kidney(1)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(193;0.000685)|KIRC - Kidney renal clear cell carcinoma(197;0.00596)|Kidney(197;0.00684)		TCTTTAATGAGGTTGGCAAAC	0.438													27	57					0	0	0.005443	0	0
PLXNB1	5364	broad.mit.edu	37	3	48464919	48464919	+	Missense_Mutation	SNP	G	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:48464919G>C	uc003csw.2	-	3	1372	c.1102C>G	c.(1102-1104)CCA>GCA	p.P368A	PLXNB1_uc003csu.2_Missense_Mutation_p.P368A|PLXNB1_uc003csx.2_Missense_Mutation_p.P368A|PLXNB1_uc010hjx.1_RNA	NM_002673	NP_002664	O43157	PLXB1_HUMAN	plexin B1 precursor	368	Extracellular (Potential).|Sema.				axon guidance|cell migration|intracellular signal transduction|regulation of cell shape|regulation of cytoskeleton organization|regulation of small GTPase mediated signal transduction|semaphorin-plexin signaling pathway	extracellular region|integral to plasma membrane|intracellular|semaphorin receptor complex	GTPase activator activity|semaphorin receptor activity|semaphorin receptor binding			ovary(2)|pancreas(1)|breast(1)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		CTCACCACTGGCAGCTGTGCA	0.597													4	57					0	0	0.000602	0	0
COL7A1	1294	broad.mit.edu	37	3	48619179	48619180	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:48619179_48619180GG>AA	uc003ctz.2	-	48	4682_4683	c.4681_4682CC>TT	c.(4681-4683)CCC>TTC	p.P1561F	MIR711_hsa-mir-711|MI0012488_5'Flank	NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	1561	Triple-helical region.				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		GGGCCCAGCGGGCCCCACATCT	0.579													18	114					0	0	0.004672	0	0
COL7A1	1294	broad.mit.edu	37	3	48621767	48621767	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:48621767G>A	uc003ctz.2	-	36	4162	c.4161C>T	c.(4159-4161)CCC>CCT	p.P1387P		NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	1387	Triple-helical region.|Interrupted collagenous region.				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		GGGGGCCACGGGGTCCTGGGT	0.617													6	11					0	0	0.001984	0	0
COL7A1	1294	broad.mit.edu	37	3	48623516	48623516	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:48623516G>A	uc003ctz.2	-	27	3715	c.3714C>T	c.(3712-3714)TTC>TTT	p.F1238F		NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	1238	Nonhelical region (NC1).				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		CCTGAGTAGTGAAGGATGCCT	0.557													53	77					0	0	0.014410	0	0
COL7A1	1294	broad.mit.edu	37	3	48625814	48625814	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:48625814C>T	uc003ctz.2	-	20	2612	c.2611G>A	c.(2611-2613)GGG>AGG	p.G871R		NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	871	Fibronectin type-III 8.|Nonhelical region (NC1).				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		TGAAGCGTCCCCAGGGCTGGC	0.692													7	11					0	0	0.003080	0	0
COL7A1	1294	broad.mit.edu	37	3	48629344	48629344	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:48629344C>T	uc003ctz.2	-	10	1345	c.1344G>A	c.(1342-1344)TGG>TGA	p.W448*		NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	448	Nonhelical region (NC1).|Fibronectin type-III 3.				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		TCTCACGCCGCCATTCCAACC	0.627													28	72					0	0	0.009535	0	0
CELSR3	1951	broad.mit.edu	37	3	48677424	48677424	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:48677424C>T	uc003cul.2	-	34	9875	c.9594G>A	c.(9592-9594)TCG>TCA	p.S3198S	CELSR3_uc003cuf.1_Silent_p.S3296S|CELSR3_uc010hkf.2_Silent_p.S488S|CELSR3_uc010hkg.2_Silent_p.S1181S	NM_001407	NP_001398	Q9NYQ7	CELR3_HUMAN	cadherin EGF LAG seven-pass G-type receptor 3	3198	Cytoplasmic (Potential).				homophilic cell adhesion|multicellular organismal development|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(5)|upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)	11				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		CCCGAGAGTTCGAGCTCCTAG	0.662													14	36					0	0	0.001855	0	0
CELSR3	1951	broad.mit.edu	37	3	48685752	48685752	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:48685752C>T	uc003cul.2	-	19	7201	c.6920G>A	c.(6919-6921)AGG>AAG	p.R2307K	CELSR3_uc003cuf.1_Missense_Mutation_p.R2377K|CELSR3_uc010hkg.2_Missense_Mutation_p.R290K	NM_001407	NP_001398	Q9NYQ7	CELR3_HUMAN	cadherin EGF LAG seven-pass G-type receptor 3	2307	Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(5)|upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)	11				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		TTCCATATTCCTTGCGAGTGT	0.657													5	27					0	0	0.006214	0	0
ARIH2	10425	broad.mit.edu	37	3	49011154	49011154	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:49011154C>T	uc003cvb.2	+	9	1105	c.793C>T	c.(793-795)CAC>TAC	p.H265Y	ARIH2_uc003cvc.2_Missense_Mutation_p.H265Y|ARIH2_uc003cvf.2_Missense_Mutation_p.H183Y|ARIH2_uc010hkl.2_Missense_Mutation_p.H265Y	NM_006321	NP_006312	O95376	ARI2_HUMAN	ariadne homolog 2	265	IBR-type.				developmental cell growth|hemopoietic stem cell proliferation|protein K48-linked ubiquitination|protein K63-linked ubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	nucleic acid binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;9.42e-05)|Kidney(197;0.00258)|KIRC - Kidney renal clear cell carcinoma(197;0.00269)		TCAGATGTATCACGCACCCAC	0.408													11	36					0	0	0.010729	0	0
IMPDH2	3615	broad.mit.edu	37	3	49065936	49065936	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:49065936G>A	uc003cvt.2	-	3	269	c.177C>T	c.(175-177)ATC>ATT	p.I59I		NM_000884	NP_000875	P12268	IMDH2_HUMAN	inosine monophosphate dehydrogenase 2	59					GMP biosynthetic process|purine base metabolic process	cytosol|nucleus	IMP dehydrogenase activity|metal ion binding|nucleotide binding|protein binding			lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00216)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)	Mycophenolate mofetil(DB00688)|Mycophenolic acid(DB01024)|NADH(DB00157)	TCTTAAGAGTGATTTTCTTGG	0.547													8	56					0	0	0.004482	0	0
RNF123	63891	broad.mit.edu	37	3	49735880	49735880	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:49735880T>C	uc003cxh.2	+	8	577	c.491T>C	c.(490-492)GTT>GCT	p.V164A	RNF123_uc010hky.1_5'Flank|RNF123_uc003cxi.2_5'Flank	NM_022064	NP_071347	Q5XPI4	RN123_HUMAN	ring finger protein 123	164	B30.2/SPRY.					cytoplasm	ligase activity|protein binding|zinc ion binding			kidney(3)|ovary(1)|lung(1)|breast(1)|skin(1)	7				BRCA - Breast invasive adenocarcinoma(193;4.71e-05)|Kidney(197;0.00227)|KIRC - Kidney renal clear cell carcinoma(197;0.00255)		TAGGAGGGGGTTGGAGATACA	0.567													14	34					0	0	0.003163	0	0
RNF123	63891	broad.mit.edu	37	3	49743429	49743429	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:49743429C>T	uc003cxh.2	+	25	2405	c.2319C>T	c.(2317-2319)TCC>TCT	p.S773S	RNF123_uc010hky.1_Silent_p.S435S|RNF123_uc003cxi.2_RNA	NM_022064	NP_071347	Q5XPI4	RN123_HUMAN	ring finger protein 123	773						cytoplasm	ligase activity|protein binding|zinc ion binding			kidney(3)|ovary(1)|lung(1)|breast(1)|skin(1)	7				BRCA - Breast invasive adenocarcinoma(193;4.71e-05)|Kidney(197;0.00227)|KIRC - Kidney renal clear cell carcinoma(197;0.00255)		TGGGTGTCTCCGATGATGTCA	0.587													29	49					0	0	0.010818	0	0
CDHR4	389118	broad.mit.edu	37	3	49836294	49836294	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:49836294G>A	uc010hkz.2	-	4	469	c.460C>T	c.(460-462)CTG>TTG	p.L154L	CDHR4_uc003cxp.2_Missense_Mutation_p.S179F|CDHR4_uc011bcw.1_Silent_p.L154L	NM_001007540	NP_001007541	A6H8M9	CDHR4_HUMAN	cadherin-like 29 precursor	154	Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0						GGGAGGAGCAGAGTGTACAGC	0.592													5	14					0	0	0.000602	0	0
RBM5	10181	broad.mit.edu	37	3	50155853	50155853	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:50155853G>A	uc003cyg.2	+	25	2560	c.2412G>A	c.(2410-2412)CGG>CGA	p.R804R	RBM5_uc011bdk.1_Silent_p.R632R|RBM5_uc003cyh.2_Silent_p.R261R|uc003cyi.1_Intron	NM_005778	NP_005769	P52756	RBM5_HUMAN	RNA binding motif protein 5	804	Required for interaction with U2AF2.				apoptosis|negative regulation of cell proliferation|positive regulation of apoptosis|regulation of alternative nuclear mRNA splicing, via spliceosome|spliceosome assembly	nucleoplasm|spliceosomal complex	DNA binding|mRNA binding|nucleotide binding|protein binding|zinc ion binding			lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000121)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		ATGCTGTCCGGAAAGCCATGT	0.473													14	17					0	0	0.004007	0	0
SLC38A3	10991	broad.mit.edu	37	3	50253047	50253047	+	Missense_Mutation	SNP	A	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:50253047A>C	uc003cyn.3	+	6	586	c.445A>C	c.(445-447)ATC>CTC	p.I149L	SLC38A3_uc011bdl.1_Missense_Mutation_p.I124L|SLC38A3_uc011bdm.1_Missense_Mutation_p.I80L	NM_006841	NP_006832	Q99624	S38A3_HUMAN	solute carrier family 38, member 3	149	Helical; (Potential).				cellular nitrogen compound metabolic process|sodium ion transport	integral to plasma membrane	antiporter activity|L-alanine transmembrane transporter activity|L-asparagine transmembrane transporter activity|L-glutamine transmembrane transporter activity|L-histidine transmembrane transporter activity|symporter activity			breast(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000275)|KIRC - Kidney renal clear cell carcinoma(197;0.00548)|Kidney(197;0.00615)	L-Asparagine(DB00174)|L-Glutamine(DB00130)|L-Histidine(DB00117)	AGCCCTGGCCATCACGCTCCA	0.632													12	44					0	0	0.004007	0	0
GNAI2	2771	broad.mit.edu	37	3	50293694	50293694	+	Missense_Mutation	SNP	C	T	T	rs137853226		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:50293694C>T	uc003cyq.1	+	5	656	c.535C>T	c.(535-537)CGC>TGC	p.R179C	GNAI2_uc003cyo.1_Missense_Mutation_p.R163C|GNAI2_uc003cyp.1_Missense_Mutation_p.R163C|GNAI2_uc010hlg.1_Missense_Mutation_p.R98C|GNAI2_uc011bdn.1_Missense_Mutation_p.R142C|GNAI2_uc003cyr.1_Missense_Mutation_p.R98C	NM_002070	NP_002061	P04899	GNAI2_HUMAN	guanine nucleotide binding protein (G protein),	179	GTP (By similarity).				adenosine receptor signaling pathway|cell cycle|cell division|gamma-aminobutyric acid signaling pathway|inhibition of adenylate cyclase activity by G-protein signaling pathway|negative regulation of calcium ion transport via voltage-gated calcium channel activity|platelet activation|response to nutrient|synaptic transmission	centrosome|heterotrimeric G-protein complex|midbody	G-protein beta/gamma-subunit complex binding|G-protein-coupled receptor binding|GTP binding|GTPase activity|signal transducer activity			ovary(1)|central_nervous_system(1)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.000288)|KIRC - Kidney renal clear cell carcinoma(197;0.00571)|Kidney(197;0.00651)		GCTACGGACCCGCGTAAAGAC	0.592													15	30					0	0	0.004990	0	0
CACNA2D2	9254	broad.mit.edu	37	3	50513589	50513589	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:50513589C>T	uc003daq.2	-	2	286	c.248G>A	c.(247-249)GGC>GAC	p.G83D	CACNA2D2_uc003dap.2_Missense_Mutation_p.G83D	NM_006030	NP_006021	Q9NY47	CA2D2_HUMAN	calcium channel, voltage-dependent, alpha	83	Extracellular (Potential).				energy reserve metabolic process|regulation of insulin secretion	integral to membrane|plasma membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000365)|KIRC - Kidney renal clear cell carcinoma(197;0.00862)|Kidney(197;0.01)	Gabapentin(DB00996)	CCGCATCACGCCGTCGACCTC	0.632													5	10					0	0	0.001168	0	0
DOCK3	1795	broad.mit.edu	37	3	51198003	51198003	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:51198003G>A	uc011bds.1	+	12	930	c.907G>A	c.(907-909)GAC>AAC	p.D303N		NM_004947	NP_004938	Q8IZD9	DOCK3_HUMAN	dedicator of cytokinesis 3	303						cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00449)|Kidney(197;0.00518)		GCTCCTGAACGACTCAAAGAA	0.507													5	13					0	0	0.001168	0	0
DOCK3	1795	broad.mit.edu	37	3	51251631	51251631	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:51251631G>A	uc011bds.1	+	14	1228	c.1205G>A	c.(1204-1206)GGA>GAA	p.G402E		NM_004947	NP_004938	Q8IZD9	DOCK3_HUMAN	dedicator of cytokinesis 3	402						cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00449)|Kidney(197;0.00518)		TTTAATAGGGGATTGGCAATT	0.423													11	26					0	0	0.010729	0	0
DOCK3	1795	broad.mit.edu	37	3	51263190	51263190	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:51263190G>A	uc011bds.1	+	15	1386	c.1363G>A	c.(1363-1365)GGA>AGA	p.G455R		NM_004947	NP_004938	Q8IZD9	DOCK3_HUMAN	dedicator of cytokinesis 3	455	DHR-1.					cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00449)|Kidney(197;0.00518)		TTATGCAGATGGAGAAATCTT	0.428													22	88					0	0	0.014323	0	0
IQCF1	132141	broad.mit.edu	37	3	51929158	51929158	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:51929158G>A	uc003dbv.2	-	4	464	c.366C>T	c.(364-366)TCC>TCT	p.S122S	IQCF1_uc003dbq.3_Intron	NM_152397	NP_689610	Q8N6M8	IQCF1_HUMAN	IQ motif containing F1	122										ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.000541)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)		ACTCCTTCCGGGAGAAGGCCT	0.607													9	74					0	0	0.006214	0	0
DUSP7	1849	broad.mit.edu	37	3	52088020	52088020	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:52088020G>A	uc003dct.2	-	2	967	c.888C>T	c.(886-888)ATC>ATT	p.I296I	DUSP7_uc010hma.2_Silent_p.I296I	NM_001947	NP_001938	Q16829	DUS7_HUMAN	dual specificity phosphatase 7	296					inactivation of MAPK activity|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	MAP kinase tyrosine/serine/threonine phosphatase activity|protein binding|protein tyrosine phosphatase activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;5.14e-05)|Kidney(197;0.000534)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)		CAGAGATGGGGATCTGCTTGT	0.577													27	58					0	0	0.004656	0	0
DNAH1	25981	broad.mit.edu	37	3	52383297	52383297	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:52383297C>T	uc011bef.1	+	14	2648	c.2387C>T	c.(2386-2388)TCG>TTG	p.S796L	DNAH1_uc003ddt.1_Missense_Mutation_p.S796L	NM_015512	NP_056327	Q9P2D7	DYH1_HUMAN	dynein, axonemal, heavy chain 1	796	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement|response to mechanical stimulus	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			large_intestine(3)	3				BRCA - Breast invasive adenocarcinoma(193;2.02e-05)|OV - Ovarian serous cystadenocarcinoma(275;0.000207)|Kidney(197;0.0022)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		CTGGACAGCTCGCTGCCCAGC	0.597													12	20					0	0	0.013537	0	0
DNAH1	25981	broad.mit.edu	37	3	52398945	52398945	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:52398945C>T	uc011bef.1	+	34	5689	c.5428C>T	c.(5428-5430)CCC>TCC	p.P1810S		NM_015512	NP_056327	Q9P2D7	DYH1_HUMAN	dynein, axonemal, heavy chain 1	1810					ciliary or flagellar motility|microtubule-based movement|response to mechanical stimulus	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			large_intestine(3)	3				BRCA - Breast invasive adenocarcinoma(193;2.02e-05)|OV - Ovarian serous cystadenocarcinoma(275;0.000207)|Kidney(197;0.0022)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		CGACCTGTTTCCCACCATCAA	0.607													29	34					0	0	0.007291	0	0
DNAH1	25981	broad.mit.edu	37	3	52429461	52429461	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:52429461C>T	uc011bef.1	+	69	11367	c.11106C>T	c.(11104-11106)GCC>GCT	p.A3702A	DNAH1_uc003ddv.2_Silent_p.A560A	NM_015512	NP_056327	Q9P2D7	DYH1_HUMAN	dynein, axonemal, heavy chain 1	3767	AAA 6 (By similarity).				ciliary or flagellar motility|microtubule-based movement|response to mechanical stimulus	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			large_intestine(3)	3				BRCA - Breast invasive adenocarcinoma(193;2.02e-05)|OV - Ovarian serous cystadenocarcinoma(275;0.000207)|Kidney(197;0.0022)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		AGCTCTCTGCCATCTCCCTGG	0.622													13	30					0	0	0.003163	0	0
STAB1	23166	broad.mit.edu	37	3	52553332	52553332	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:52553332C>T	uc003dej.2	+	49	5161	c.5087C>T	c.(5086-5088)GCC>GTC	p.A1696V	STAB1_uc003dek.1_5'UTR|STAB1_uc003del.2_5'Flank	NM_015136	NP_055951	Q9NY15	STAB1_HUMAN	stabilin 1 precursor	1696	Extracellular (Potential).|FAS1 5.				cell adhesion|cell-cell signaling|defense response to bacterium|inflammatory response|negative regulation of angiogenesis|receptor-mediated endocytosis	integral to plasma membrane	bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			large_intestine(3)|upper_aerodigestive_tract(2)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	9				BRCA - Breast invasive adenocarcinoma(193;1.73e-05)|Kidney(197;0.00182)|KIRC - Kidney renal clear cell carcinoma(197;0.00205)|OV - Ovarian serous cystadenocarcinoma(275;0.0482)		GACCATGAGGCCGTGAACGGC	0.637													51	107					0	0	0.014410	0	0
STAB1	23166	broad.mit.edu	37	3	52554946	52554946	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:52554946G>A	uc003dej.2	+	55	5907	c.5833G>A	c.(5833-5835)GGC>AGC	p.G1945S	STAB1_uc003dek.1_5'UTR|STAB1_uc003del.2_5'Flank	NM_015136	NP_055951	Q9NY15	STAB1_HUMAN	stabilin 1 precursor	1945	Extracellular (Potential).				cell adhesion|cell-cell signaling|defense response to bacterium|inflammatory response|negative regulation of angiogenesis|receptor-mediated endocytosis	integral to plasma membrane	bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			large_intestine(3)|upper_aerodigestive_tract(2)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	9				BRCA - Breast invasive adenocarcinoma(193;1.73e-05)|Kidney(197;0.00182)|KIRC - Kidney renal clear cell carcinoma(197;0.00205)|OV - Ovarian serous cystadenocarcinoma(275;0.0482)		CCTGGGCAGGGGCTGCCACCG	0.617													22	31					0	0	0.010504	0	0
NT5DC2	64943	broad.mit.edu	37	3	52562323	52562323	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:52562323G>A	uc003deo.2	-	6	960	c.536C>T	c.(535-537)CCC>CTC	p.P179L	NT5DC2_uc003dem.2_Missense_Mutation_p.P49L|NT5DC2_uc003den.2_Missense_Mutation_p.P216L|NT5DC2_uc010hmi.2_Missense_Mutation_p.P191L|NT5DC2_uc010hmj.2_5'UTR	NM_022908	NP_075059	Q9H857	NT5D2_HUMAN	5'-nucleotidase domain containing 2 isoform 2	179							hydrolase activity|metal ion binding				0				BRCA - Breast invasive adenocarcinoma(193;1.7e-05)|Kidney(197;0.00177)|KIRC - Kidney renal clear cell carcinoma(197;0.002)|OV - Ovarian serous cystadenocarcinoma(275;0.0476)		CTTAATGGAGGGACCCTGGGG	0.582													14	79					0	0	0.003163	0	0
ITIH3	3699	broad.mit.edu	37	3	52836469	52836469	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:52836469C>T	uc003dfv.2	+	12	1539	c.1503C>T	c.(1501-1503)ATC>ATT	p.I501I	ITIH3_uc011bek.1_Silent_p.I501I	NM_002217	NP_002208	Q06033	ITIH3_HUMAN	inter-alpha (globulin) inhibitor H3	501					hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|liver(1)	3				BRCA - Breast invasive adenocarcinoma(193;7e-05)|Kidney(197;0.000656)|KIRC - Kidney renal clear cell carcinoma(197;0.000794)|OV - Ovarian serous cystadenocarcinoma(275;0.0496)		GCTCTGAGATCGTGGTGGCCG	0.602													10	31					0	0	0.001855	0	0
CHDH	55349	broad.mit.edu	37	3	53851977	53851977	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:53851977C>T	uc003dgz.2	-	9	2052	c.1612G>A	c.(1612-1614)GAA>AAA	p.E538K		NM_018397	NP_060867	Q8NE62	CHDH_HUMAN	choline dehydrogenase precursor	538					alcohol metabolic process		choline dehydrogenase activity|flavin adenine dinucleotide binding			ovary(1)|central_nervous_system(1)	2		Hepatocellular(537;0.152)		BRCA - Breast invasive adenocarcinoma(193;0.000158)|KIRC - Kidney renal clear cell carcinoma(284;0.00588)|Kidney(284;0.00673)|OV - Ovarian serous cystadenocarcinoma(275;0.118)	Choline(DB00122)	CTGAGGTTTTCCACCCCGAGG	0.597													33	72					0	0	0.003755	0	0
IL17RB	55540	broad.mit.edu	37	3	53883697	53883697	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:53883697G>A	uc003dha.2	+	3	140	c.101G>A	c.(100-102)TGG>TAG	p.W34*		NM_018725	NP_061195	Q9NRM6	I17RB_HUMAN	interleukin 17B receptor precursor	34	Extracellular (Potential).				defense response|regulation of cell growth	extracellular region|integral to plasma membrane	cytokine receptor activity			ovary(2)|pancreas(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.000158)|KIRC - Kidney renal clear cell carcinoma(284;0.00588)|Kidney(284;0.00673)|OV - Ovarian serous cystadenocarcinoma(275;0.118)		TCTCCAGAGTGGATGCTACAA	0.483													23	103					0	0	0.004656	0	0
LRTM1	57408	broad.mit.edu	37	3	54959240	54959240	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:54959240C>T	uc003dhl.2	-	2	144	c.10G>A	c.(10-12)GAA>AAA	p.E4K	CACNA2D3_uc003dhf.2_Intron|CACNA2D3_uc003dhg.1_Intron|CACNA2D3_uc003dhh.1_Intron	NM_020678	NP_065729	Q9HBL6	LRTM1_HUMAN	leucine-rich repeats and transmembrane domains 1	4						integral to membrane					0				KIRC - Kidney renal clear cell carcinoma(284;0.00975)|Kidney(284;0.0112)|OV - Ovarian serous cystadenocarcinoma(275;0.0502)		AGGAGCAGTTCACCTACAACA	0.453													9	23					0	0	0.010729	0	0
CACNA2D3	55799	broad.mit.edu	37	3	55108198	55108198	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:55108198C>T	uc003dhf.2	+	38	3289	c.3241C>T	c.(3241-3243)CTG>TTG	p.L1081L		NM_018398	NP_060868	Q8IZS8	CA2D3_HUMAN	calcium channel, voltage-dependent, alpha	1081	Helical; (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			large_intestine(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7				KIRC - Kidney renal clear cell carcinoma(284;0.00287)|Kidney(284;0.00327)		AGTCCTCCTTCTGCTCCCTCT	0.502													31	78					0	0	0.004878	0	0
ERC2	26059	broad.mit.edu	37	3	56044597	56044597	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:56044597C>T	uc003dhr.1	-	9	2056	c.1800G>A	c.(1798-1800)TTG>TTA	p.L600L	ERC2_uc003dht.1_Silent_p.L71L	NM_015576	NP_056391	O15083	ERC2_HUMAN	cytomatrix protein p110	600	Potential.					cell junction|cytoplasm|cytoskeleton|growth cone|presynaptic membrane|synaptosome	protein binding			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0667)|Kidney(284;0.0873)|OV - Ovarian serous cystadenocarcinoma(275;0.219)		GCTGTTCTTTCAAGCGCTCAA	0.388													40	96					0	0	0.008740	0	0
ERC2	26059	broad.mit.edu	37	3	56330247	56330247	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:56330247C>T	uc003dhr.1	-	3	1130	c.874G>A	c.(874-876)GAA>AAA	p.E292K		NM_015576	NP_056391	O15083	ERC2_HUMAN	cytomatrix protein p110	292	Potential.					cell junction|cytoplasm|cytoskeleton|growth cone|presynaptic membrane|synaptosome	protein binding			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0667)|Kidney(284;0.0873)|OV - Ovarian serous cystadenocarcinoma(275;0.219)		TTCTGCGTTTCAATTCTCAGC	0.468													46	326					0	0	0.014410	0	0
ERC2	26059	broad.mit.edu	37	3	56330340	56330340	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:56330340C>T	uc003dhr.1	-	3	1037	c.781G>A	c.(781-783)GAG>AAG	p.E261K		NM_015576	NP_056391	O15083	ERC2_HUMAN	cytomatrix protein p110	261	Potential.					cell junction|cytoplasm|cytoskeleton|growth cone|presynaptic membrane|synaptosome	protein binding			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0667)|Kidney(284;0.0873)|OV - Ovarian serous cystadenocarcinoma(275;0.219)		CTAAAGTTCTCCTCGGTCAGC	0.542													64	152					0	0	0.014410	0	0
ARHGEF3	50650	broad.mit.edu	37	3	56766272	56766272	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:56766272C>T	uc003dig.2	-	9	1391	c.1222G>A	c.(1222-1224)GAG>AAG	p.E408K	ARHGEF3_uc011bew.1_Missense_Mutation_p.E408K|ARHGEF3_uc003dih.2_Missense_Mutation_p.E440K|ARHGEF3_uc011bev.1_Missense_Mutation_p.E379K|ARHGEF3_uc003dif.2_Missense_Mutation_p.E414K|ARHGEF3_uc010hmy.1_Missense_Mutation_p.E206K|ARHGEF3_uc003dii.2_Missense_Mutation_p.E408K	NM_019555	NP_062455	Q9NR81	ARHG3_HUMAN	Rho guanine nucleotide exchange factor 3 isoform	408	PH.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|Rho protein signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0161)|Kidney(284;0.019)|OV - Ovarian serous cystadenocarcinoma(275;0.193)		ATACTTCTCTCATTGTTGCTG	0.463													4	41					0	0	0.009096	0	0
ARHGEF3	50650	broad.mit.edu	37	3	56807801	56807801	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:56807801G>A	uc003dig.2	-	2	309	c.140C>T	c.(139-141)TCG>TTG	p.S47L	ARHGEF3_uc011bew.1_Missense_Mutation_p.S47L|ARHGEF3_uc003dih.2_Missense_Mutation_p.S79L|ARHGEF3_uc011bev.1_Missense_Mutation_p.S18L|ARHGEF3_uc003dif.2_Missense_Mutation_p.S53L|ARHGEF3_uc010hmy.1_5'UTR|ARHGEF3_uc003dii.2_Missense_Mutation_p.S47L	NM_019555	NP_062455	Q9NR81	ARHG3_HUMAN	Rho guanine nucleotide exchange factor 3 isoform	47					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|Rho protein signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0161)|Kidney(284;0.019)|OV - Ovarian serous cystadenocarcinoma(275;0.193)		GTTTGCTAGCGACGTGACTCG	0.463													45	87					0	0	0.014410	0	0
FLNB	2317	broad.mit.edu	37	3	58112447	58112447	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:58112447G>A	uc003djj.2	+	24	4345	c.4180G>A	c.(4180-4182)GAT>AAT	p.D1394N	FLNB_uc010hne.2_Missense_Mutation_p.D1394N|FLNB_uc003djk.2_Missense_Mutation_p.D1394N|FLNB_uc010hnf.2_Missense_Mutation_p.D1394N|FLNB_uc003djl.2_Missense_Mutation_p.D1225N|FLNB_uc003djm.2_Missense_Mutation_p.D1225N	NM_001457	NP_001448	O75369	FLNB_HUMAN	filamin B isoform 2	1394	Filamin 12.|Interaction with FBLP1.				actin cytoskeleton organization|cell differentiation|cytoskeletal anchoring at plasma membrane|signal transduction	cell cortex|integral to membrane|nucleus|sarcomere	actin binding			breast(8)|ovary(5)|lung(3)|skin(2)|central_nervous_system(1)	19				BRCA - Breast invasive adenocarcinoma(55;0.000335)|KIRC - Kidney renal clear cell carcinoma(284;0.0726)|Kidney(284;0.0898)		CGCACCGGGGGATTACGATGT	0.478													24	37					0	0	0.004656	0	0
FAM3D	131177	broad.mit.edu	37	3	58635049	58635049	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:58635049C>T	uc003dkq.2	-	4	435	c.138G>A	c.(136-138)AAG>AAA	p.K46K		NM_138805	NP_620160	Q96BQ1	FAM3D_HUMAN	family with sequence similarity 3, member D	46					negative regulation of insulin secretion	extracellular region	cytokine activity				0				BRCA - Breast invasive adenocarcinoma(55;0.000225)|Kidney(10;0.000667)|KIRC - Kidney renal clear cell carcinoma(10;0.000802)|OV - Ovarian serous cystadenocarcinoma(275;0.169)		CACGGATCTCCTTGGTGGGCG	0.632													15	27					0	0	0.007413	0	0
PTPRG	5793	broad.mit.edu	37	3	61989031	61989031	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:61989031C>T	uc003dlb.2	+	4	1098	c.379C>T	c.(379-381)CTT>TTT	p.L127F	PTPRG_uc003dlc.2_Missense_Mutation_p.L127F	NM_002841	NP_002832	P23470	PTPRG_HUMAN	protein tyrosine phosphatase, receptor type, G	127	Extracellular (Potential).|Alpha-carbonic anhydrase.				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	identical protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(5)|lung(2)	7				BRCA - Breast invasive adenocarcinoma(55;0.000376)|KIRC - Kidney renal clear cell carcinoma(10;0.0499)|Kidney(10;0.065)		AGTCGCCATCCTTCTGAAAGA	0.438													15	48					0	0	0.004007	0	0
CADPS	8618	broad.mit.edu	37	3	62451123	62451123	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:62451123G>A	uc003dll.2	-	26	3915	c.3555C>T	c.(3553-3555)TTC>TTT	p.F1185F	CADPS_uc003dlj.1_Silent_p.F140F|CADPS_uc003dlk.1_Silent_p.F633F|CADPS_uc003dlm.2_Silent_p.F1146F|CADPS_uc003dln.2_Silent_p.F1106F	NM_003716	NP_003707	Q9ULU8	CAPS1_HUMAN	Ca2+-dependent secretion activator isoform 1	1185	Mediates targeting and association with DCVs (By similarity).				exocytosis|protein transport	cell junction|cytoplasmic vesicle membrane|cytosol|synapse	lipid binding|metal ion binding			central_nervous_system(2)|ovary(1)	3		Lung SC(41;0.0452)		BRCA - Breast invasive adenocarcinoma(55;5.98e-05)|KIRC - Kidney renal clear cell carcinoma(15;0.0246)|Kidney(15;0.0334)		AGATAGTAACGAACTAGAAAA	0.358													47	100					0	0	0.011902	0	0
CADPS	8618	broad.mit.edu	37	3	62464011	62464011	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:62464011T>C	uc003dll.2	-	23	3614	c.3254A>G	c.(3253-3255)GAA>GGA	p.E1085G	CADPS_uc003dlj.1_Missense_Mutation_p.E35G|CADPS_uc003dlk.1_Missense_Mutation_p.E533G|CADPS_uc003dlm.2_Missense_Mutation_p.E1046G|CADPS_uc003dln.2_Missense_Mutation_p.E1006G	NM_003716	NP_003707	Q9ULU8	CAPS1_HUMAN	Ca2+-dependent secretion activator isoform 1	1085	MHD1.|Interaction with DRD2.				exocytosis|protein transport	cell junction|cytoplasmic vesicle membrane|cytosol|synapse	lipid binding|metal ion binding			central_nervous_system(2)|ovary(1)	3		Lung SC(41;0.0452)		BRCA - Breast invasive adenocarcinoma(55;5.98e-05)|KIRC - Kidney renal clear cell carcinoma(15;0.0246)|Kidney(15;0.0334)		AAACTCTTCTTCAGGCCAGTG	0.473													10	68					0	0	0.008291	0	0
CADPS	8618	broad.mit.edu	37	3	62631473	62631473	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:62631473G>A	uc003dll.2	-	6	1609	c.1249C>T	c.(1249-1251)CGC>TGC	p.R417C	CADPS_uc003dlm.2_Missense_Mutation_p.R417C|CADPS_uc003dln.2_Missense_Mutation_p.R417C	NM_003716	NP_003707	Q9ULU8	CAPS1_HUMAN	Ca2+-dependent secretion activator isoform 1	417	C2.				exocytosis|protein transport	cell junction|cytoplasmic vesicle membrane|cytosol|synapse	lipid binding|metal ion binding			central_nervous_system(2)|ovary(1)	3		Lung SC(41;0.0452)		BRCA - Breast invasive adenocarcinoma(55;5.98e-05)|KIRC - Kidney renal clear cell carcinoma(15;0.0246)|Kidney(15;0.0334)		TATACGATGCGATTTGGAGCC	0.473													36	97					0	0	0.007835	0	0
SNTN	132203	broad.mit.edu	37	3	63638413	63638413	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:63638413G>A	uc003dlr.2	+	1	70	c.50G>A	c.(49-51)GGA>GAA	p.G17E		NM_001080537	NP_001074006	A6NMZ2	SNTAN_HUMAN	sentan, cilia apical structure protein	17						cilium	calcium ion binding			ovary(1)	1						CACTTGGAAGGAGATCCCAAT	0.478													20	31					0	0	0.014323	0	0
MAGI1	9223	broad.mit.edu	37	3	65369279	65369279	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:65369279C>T	uc003dmn.2	-	15	2962	c.2436G>A	c.(2434-2436)CAG>CAA	p.Q812Q	MAGI1_uc003dmm.2_Silent_p.Q840Q|MAGI1_uc003dmo.2_Silent_p.Q840Q|MAGI1_uc003dmp.2_Silent_p.Q812Q|MAGI1_uc003dmq.1_5'Flank|MAGI1_uc010hnx.1_Silent_p.Q123Q	NM_001033057	NP_001028229	Q96QZ7	MAGI1_HUMAN	membrane associated guanylate kinase, WW and PDZ	840	PDZ 4.				cell adhesion|cell surface receptor linked signaling pathway|protein complex assembly	tight junction	ATP binding|protein C-terminus binding			lung(2)|skin(1)|breast(1)|kidney(1)|pancreas(1)	6		Lung NSC(201;0.0016)		BRCA - Breast invasive adenocarcinoma(55;0.00138)|KIRC - Kidney renal clear cell carcinoma(15;0.0988)|Kidney(15;0.133)		GGAAGATGTCCTGTTCCTGGT	0.438													12	47					0	0	0.013537	0	0
MAGI1	9223	broad.mit.edu	37	3	65464362	65464362	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:65464362C>T	uc003dmn.2	-	4	1188	c.662G>A	c.(661-663)CGA>CAA	p.R221Q	MAGI1_uc003dmm.2_Missense_Mutation_p.R221Q|MAGI1_uc003dmo.2_Missense_Mutation_p.R221Q|MAGI1_uc003dmp.2_Missense_Mutation_p.R221Q|MAGI1_uc010hny.2_Missense_Mutation_p.R105Q|MAGI1_uc003dmr.2_Missense_Mutation_p.R221Q	NM_001033057	NP_001028229	Q96QZ7	MAGI1_HUMAN	membrane associated guanylate kinase, WW and PDZ	221	Guanylate kinase-like.				cell adhesion|cell surface receptor linked signaling pathway|protein complex assembly	tight junction	ATP binding|protein C-terminus binding			lung(2)|skin(1)|breast(1)|kidney(1)|pancreas(1)	6		Lung NSC(201;0.0016)		BRCA - Breast invasive adenocarcinoma(55;0.00138)|KIRC - Kidney renal clear cell carcinoma(15;0.0988)|Kidney(15;0.133)		GGACTTGGTTCGCTTCGGGGT	0.527													37	73					0	0	0.004289	0	0
FAM19A1	407738	broad.mit.edu	37	3	68466508	68466508	+	Missense_Mutation	SNP	A	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:68466508A>T	uc003dnd.2	+	3	413	c.197A>T	c.(196-198)AAG>ATG	p.K66M	FAM19A1_uc003dne.2_Missense_Mutation_p.K66M|FAM19A1_uc003dng.2_Missense_Mutation_p.K66M	NM_213609	NP_998774	Q7Z5A9	F19A1_HUMAN	family with sequence similarity 19 (chemokine	66						endoplasmic reticulum|extracellular region				ovary(1)	1		Lung NSC(201;0.0117)		BRCA - Breast invasive adenocarcinoma(55;7.7e-05)|Epithelial(33;0.000937)|KIRC - Kidney renal clear cell carcinoma(39;0.0579)|Kidney(39;0.0743)		CAAACAGTAAAGTGTTCCTGT	0.483													27	69					0	0	0.006320	0	0
MITF	4286	broad.mit.edu	37	3	70014315	70014315	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:70014315C>T	uc003dnz.2	+	10	1595	c.1479C>T	c.(1477-1479)CTC>CTT	p.L493L	MITF_uc011bgb.1_Silent_p.L441L|MITF_uc003doa.2_Silent_p.L492L|MITF_uc003dob.2_Silent_p.L477L|MITF_uc003dod.2_Silent_p.L468L|MITF_uc003doe.2_Silent_p.L386L|MITF_uc003dof.2_Silent_p.L392L	NM_198159	NP_937802	O75030	MITF_HUMAN	microphthalmia-associated transcription factor	499					melanocyte differentiation|multicellular organismal development|protein complex assembly	nucleus|protein complex	DNA binding|protein binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription			ovary(2)	2		Lung NSC(201;0.0384)|Prostate(884;0.0526)		BRCA - Breast invasive adenocarcinoma(55;3.07e-05)|Epithelial(33;0.000138)|LUSC - Lung squamous cell carcinoma(21;0.008)|Lung(16;0.0107)|KIRC - Kidney renal clear cell carcinoma(39;0.204)|Kidney(39;0.239)		CTGATCCACTCCTTTCCTCAG	0.542			A		melanoma 		Waardenburg syndrome type 2|Tietz syndrome						18	32					0	0	0.008871	0	0
CNTN3	5067	broad.mit.edu	37	3	74350893	74350893	+	Missense_Mutation	SNP	G	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:74350893G>T	uc003dpm.1	-	14	1930	c.1850C>A	c.(1849-1851)TCT>TAT	p.S617Y		NM_020872	NP_065923	Q9P232	CNTN3_HUMAN	contactin 3 precursor	617	Fibronectin type-III 1.				cell adhesion	anchored to membrane|plasma membrane	protein binding			breast(3)|ovary(1)|skin(1)	5		Lung NSC(201;0.138)|Lung SC(41;0.21)		Epithelial(33;0.00212)|BRCA - Breast invasive adenocarcinoma(55;0.00258)|LUSC - Lung squamous cell carcinoma(21;0.00461)|Lung(16;0.01)		TTCTTTCCAAGAGAGTTGGGC	0.448													20	47					9.95505e-16	1.07483e-15	0.014323	1	0
CNTN3	5067	broad.mit.edu	37	3	74383952	74383952	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:74383952G>A	uc003dpm.1	-	12	1682	c.1602C>T	c.(1600-1602)ACC>ACT	p.T534T		NM_020872	NP_065923	Q9P232	CNTN3_HUMAN	contactin 3 precursor	534	Ig-like C2-type 6.				cell adhesion	anchored to membrane|plasma membrane	protein binding			breast(3)|ovary(1)|skin(1)	5		Lung NSC(201;0.138)|Lung SC(41;0.21)		Epithelial(33;0.00212)|BRCA - Breast invasive adenocarcinoma(55;0.00258)|LUSC - Lung squamous cell carcinoma(21;0.00461)|Lung(16;0.01)		TGAAATACCAGGTAAAGATGA	0.378													21	31					0	0	0.008871	0	0
ROBO2	6092	broad.mit.edu	37	3	77571981	77571981	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:77571981G>A	uc003dpy.3	+	6	1505	c.862G>A	c.(862-864)GAA>AAA	p.E288K	ROBO2_uc003dpz.2_Missense_Mutation_p.E288K|ROBO2_uc011bgj.1_RNA|ROBO2_uc011bgk.1_Missense_Mutation_p.E288K	NM_002942	NP_002933	Q9HCK4	ROBO2_HUMAN	roundabout, axon guidance receptor, homolog 2	288	Ig-like C2-type 3.|Extracellular (Potential).				apoptosis involved in luteolysis|axon midline choice point recognition|cellular response to hormone stimulus|homophilic cell adhesion|metanephros development|negative regulation of negative chemotaxis|negative regulation of synaptogenesis|olfactory bulb interneuron development|positive regulation of axonogenesis|retinal ganglion cell axon guidance|ureteric bud development	axolemma|cell surface|integral to membrane	axon guidance receptor activity|identical protein binding			lung(5)|skin(3)|ovary(1)|large_intestine(1)|liver(1)	11				Epithelial(33;0.00199)|LUSC - Lung squamous cell carcinoma(21;0.008)|BRCA - Breast invasive adenocarcinoma(55;0.00884)|Lung(72;0.0183)|KIRC - Kidney renal clear cell carcinoma(39;0.0832)|Kidney(39;0.103)		GAGTACAGATGAAGGCACCTA	0.368													24	51					0	0	0.002780	0	0
ROBO2	6092	broad.mit.edu	37	3	77612365	77612366	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:77612365_77612366GG>AA	uc003dpy.3	+	11	2210_2211	c.1567_1568GG>AA	c.(1567-1569)GGG>AAG	p.G523K	ROBO2_uc003dpz.2_Missense_Mutation_p.G527K|ROBO2_uc011bgj.1_RNA|ROBO2_uc011bgk.1_Missense_Mutation_p.G527K	NM_002942	NP_002933	Q9HCK4	ROBO2_HUMAN	roundabout, axon guidance receptor, homolog 2	523	Extracellular (Potential).|Fibronectin type-III 1.				apoptosis involved in luteolysis|axon midline choice point recognition|cellular response to hormone stimulus|homophilic cell adhesion|metanephros development|negative regulation of negative chemotaxis|negative regulation of synaptogenesis|olfactory bulb interneuron development|positive regulation of axonogenesis|retinal ganglion cell axon guidance|ureteric bud development	axolemma|cell surface|integral to membrane	axon guidance receptor activity|identical protein binding			lung(5)|skin(3)|ovary(1)|large_intestine(1)|liver(1)	11				Epithelial(33;0.00199)|LUSC - Lung squamous cell carcinoma(21;0.008)|BRCA - Breast invasive adenocarcinoma(55;0.00884)|Lung(72;0.0183)|KIRC - Kidney renal clear cell carcinoma(39;0.0832)|Kidney(39;0.103)		TGACCTGCCAGGGCCACCATCC	0.45													12	31					0	0	0.004672	0	0
ROBO2	6092	broad.mit.edu	37	3	77638049	77638049	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:77638049G>A	uc003dpy.3	+	17	3291	c.2648G>A	c.(2647-2649)CGA>CAA	p.R883Q	ROBO2_uc003dpz.2_Missense_Mutation_p.R887Q|ROBO2_uc011bgj.1_RNA|ROBO2_uc011bgk.1_Missense_Mutation_p.R887Q|ROBO2_uc003dqa.2_Missense_Mutation_p.R10Q	NM_002942	NP_002933	Q9HCK4	ROBO2_HUMAN	roundabout, axon guidance receptor, homolog 2	883	Cytoplasmic (Potential).				apoptosis involved in luteolysis|axon midline choice point recognition|cellular response to hormone stimulus|homophilic cell adhesion|metanephros development|negative regulation of negative chemotaxis|negative regulation of synaptogenesis|olfactory bulb interneuron development|positive regulation of axonogenesis|retinal ganglion cell axon guidance|ureteric bud development	axolemma|cell surface|integral to membrane	axon guidance receptor activity|identical protein binding			lung(5)|skin(3)|ovary(1)|large_intestine(1)|liver(1)	11				Epithelial(33;0.00199)|LUSC - Lung squamous cell carcinoma(21;0.008)|BRCA - Breast invasive adenocarcinoma(55;0.00884)|Lung(72;0.0183)|KIRC - Kidney renal clear cell carcinoma(39;0.0832)|Kidney(39;0.103)		TTGTATTGGCGAAGAAAGAAG	0.418													26	50					0	0	0.009535	0	0
ROBO2	6092	broad.mit.edu	37	3	77644301	77644301	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:77644301C>T	uc003dpy.3	+	18	3335	c.2692C>T	c.(2692-2694)CAA>TAA	p.Q898*	ROBO2_uc003dpz.2_Nonsense_Mutation_p.Q902*|ROBO2_uc011bgj.1_RNA|ROBO2_uc011bgk.1_Nonsense_Mutation_p.Q902*|ROBO2_uc003dqa.2_Nonsense_Mutation_p.Q25*	NM_002942	NP_002933	Q9HCK4	ROBO2_HUMAN	roundabout, axon guidance receptor, homolog 2	898	Cytoplasmic (Potential).				apoptosis involved in luteolysis|axon midline choice point recognition|cellular response to hormone stimulus|homophilic cell adhesion|metanephros development|negative regulation of negative chemotaxis|negative regulation of synaptogenesis|olfactory bulb interneuron development|positive regulation of axonogenesis|retinal ganglion cell axon guidance|ureteric bud development	axolemma|cell surface|integral to membrane	axon guidance receptor activity|identical protein binding			lung(5)|skin(3)|ovary(1)|large_intestine(1)|liver(1)	11				Epithelial(33;0.00199)|LUSC - Lung squamous cell carcinoma(21;0.008)|BRCA - Breast invasive adenocarcinoma(55;0.00884)|Lung(72;0.0183)|KIRC - Kidney renal clear cell carcinoma(39;0.0832)|Kidney(39;0.103)		AGTTACGTTTCAAAGAGGAGA	0.318													7	29					0	0	0.006214	0	0
ROBO2	6092	broad.mit.edu	37	3	77666843	77666843	+	Missense_Mutation	SNP	G	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:77666843G>T	uc003dpy.3	+	22	4116	c.3473G>T	c.(3472-3474)CGG>CTG	p.R1158L	ROBO2_uc003dpz.2_Missense_Mutation_p.R1162L|ROBO2_uc011bgj.1_RNA|ROBO2_uc011bgk.1_Missense_Mutation_p.R1162L|ROBO2_uc003dqa.2_Missense_Mutation_p.R285L	NM_002942	NP_002933	Q9HCK4	ROBO2_HUMAN	roundabout, axon guidance receptor, homolog 2	1158	Cytoplasmic (Potential).				apoptosis involved in luteolysis|axon midline choice point recognition|cellular response to hormone stimulus|homophilic cell adhesion|metanephros development|negative regulation of negative chemotaxis|negative regulation of synaptogenesis|olfactory bulb interneuron development|positive regulation of axonogenesis|retinal ganglion cell axon guidance|ureteric bud development	axolemma|cell surface|integral to membrane	axon guidance receptor activity|identical protein binding			lung(5)|skin(3)|ovary(1)|large_intestine(1)|liver(1)	11				Epithelial(33;0.00199)|LUSC - Lung squamous cell carcinoma(21;0.008)|BRCA - Breast invasive adenocarcinoma(55;0.00884)|Lung(72;0.0183)|KIRC - Kidney renal clear cell carcinoma(39;0.0832)|Kidney(39;0.103)		CCATCCCCACGGGAAGAGATG	0.478													18	57					2.54575e-18	2.75067e-18	0.010504	1	0
VGLL3	389136	broad.mit.edu	37	3	87018049	87018049	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:87018049G>A	uc003dqn.2	-	3	992	c.628C>T	c.(628-630)CCT>TCT	p.P210S		NM_016206	NP_057290	A8MV65	VGLL3_HUMAN	colon carcinoma related protein	210					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0	all_cancers(8;0.109)|Lung SC(3;0.184)	Lung NSC(201;0.0777)		LUSC - Lung squamous cell carcinoma(29;0.00241)|Lung(72;0.00712)		GATGTCAAAGGATAAGGCCAG	0.527													24	54					0	0	0.003330	0	0
EPHA3	2042	broad.mit.edu	37	3	89259197	89259197	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:89259197G>A	uc003dqy.2	+	3	566	c.341G>A	c.(340-342)GGA>GAA	p.G114E	EPHA3_uc003dqx.1_Missense_Mutation_p.G114E|EPHA3_uc010hon.1_RNA	NM_005233	NP_005224	P29320	EPHA3_HUMAN	ephrin receptor EphA3 isoform a precursor	114	Extracellular (Potential).					extracellular region|integral to plasma membrane	ATP binding			lung(17)|ovary(7)|large_intestine(4)|central_nervous_system(2)|stomach(1)|skin(1)|pancreas(1)	33	all_cancers(8;0.0406)|Melanoma(1;0.00142)|all_epithelial(1;0.0612)	Lung NSC(201;0.0782)		LUSC - Lung squamous cell carcinoma(29;0.00344)|Lung(72;0.00942)		TTGGTTTTAGGAACTTGCAAG	0.438										TSP Lung(6;0.00050)			34	58					0	0	0.012213	0	0
EPHA3	2042	broad.mit.edu	37	3	89456471	89456471	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:89456471G>A	uc003dqy.2	+	8	1872	c.1647G>A	c.(1645-1647)GCG>GCA	p.A549A	EPHA3_uc010hon.1_RNA	NM_005233	NP_005224	P29320	EPHA3_HUMAN	ephrin receptor EphA3 isoform a precursor	549	Helical; (Potential).					extracellular region|integral to plasma membrane	ATP binding			lung(17)|ovary(7)|large_intestine(4)|central_nervous_system(2)|stomach(1)|skin(1)|pancreas(1)	33	all_cancers(8;0.0406)|Melanoma(1;0.00142)|all_epithelial(1;0.0612)	Lung NSC(201;0.0782)		LUSC - Lung squamous cell carcinoma(29;0.00344)|Lung(72;0.00942)		CCATTTCAGCGGCAGTAGCAA	0.398										TSP Lung(6;0.00050)			26	27					0	0	0.012213	0	0
EPHA6	285220	broad.mit.edu	37	3	96706372	96706372	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:96706372G>A	uc010how.1	+	3	692	c.649G>A	c.(649-651)GAA>AAA	p.E217K	EPHA6_uc003drp.1_Missense_Mutation_p.E217K	NM_001080448	NP_001073917	Q9UF33	EPHA6_HUMAN	EPH receptor A6 isoform a	122	Ephrin-binding.|Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			stomach(5)|lung(4)|central_nervous_system(3)|breast(1)|skin(1)|ovary(1)|kidney(1)	16						GACTTGCAAAGAAACATTTAA	0.398													23	74					0	0	0.014323	0	0
EPHA6	285220	broad.mit.edu	37	3	96706415	96706415	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:96706415G>A	uc010how.1	+	3	735	c.692G>A	c.(691-693)GGA>GAA	p.G231E	EPHA6_uc003drp.1_Missense_Mutation_p.G231E	NM_001080448	NP_001073917	Q9UF33	EPHA6_HUMAN	EPH receptor A6 isoform a	136	Ephrin-binding.|Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			stomach(5)|lung(4)|central_nervous_system(3)|breast(1)|skin(1)|ovary(1)|kidney(1)	16						GAGTCCCACGGAATTAAATTC	0.403													33	130					0	0	0.013726	0	0
EPHA6	285220	broad.mit.edu	37	3	96706498	96706498	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:96706498C>T	uc010how.1	+	3	818	c.775C>T	c.(775-777)CGC>TGC	p.R259C	EPHA6_uc003drp.1_Missense_Mutation_p.R259C	NM_001080448	NP_001073917	Q9UF33	EPHA6_HUMAN	EPH receptor A6 isoform a	164	Ephrin-binding.|Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			stomach(5)|lung(4)|central_nervous_system(3)|breast(1)|skin(1)|ovary(1)|kidney(1)	16						TTTGGGTGATCGCATCCTCAA	0.443													69	140					0	0	0.014410	0	0
CRYBG3	131544	broad.mit.edu	37	3	97596413	97596414	+	Missense_Mutation	DNP	CC	TA	TA			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:97596413_97596414CC>TA	uc003drx.2	+	1	595_596	c.531_532CC>TA	c.(529-534)TCCCTT>TCTATT	p.L178I		NM_153605	NP_705833			beta-gamma crystallin domain containing 3												0						CTGTTTTATCCCTTCTCCAGTC	0.465													19	44					0	0	0.004672	0	0
GABRR3	200959	broad.mit.edu	37	3	97726707	97726707	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:97726707C>T	uc011bgr.1	-	6	655	c.655G>A	c.(655-657)GGA>AGA	p.G219R		NM_001105580	NP_001099050	A8MPY1	GBRR3_HUMAN	gamma-aminobutyric acid (GABA) receptor, rho 3	219	Extracellular (Potential).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity				0						GACTTGTTTCCGTGTTTCCAG	0.343													5	9					0	0	0.000602	0	0
OR5AC2	81050	broad.mit.edu	37	3	97806870	97806870	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:97806870C>T	uc011bgs.1	+	1	854	c.854C>T	c.(853-855)CCC>CTC	p.P285L		NM_054106	NP_473447	Q9NZP5	O5AC2_HUMAN	olfactory receptor, family 5, subfamily AC,	285	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						ATTATAATTCCCCTGCTAAAC	0.373													8	28					0	0	0.003080	0	0
OR5H1	26341	broad.mit.edu	37	3	97851841	97851841	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:97851841G>A	uc011bgt.1	+	1	300	c.300G>A	c.(298-300)CAG>CAA	p.Q100Q		NM_001005338	NP_001005338	A6NKK0	OR5H1_HUMAN	olfactory receptor, family 5, subfamily H,	100	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2						GCAAGATACAGTTTTTTTCGT	0.393													36	109					0	0	0.005524	0	0
OR5H1	26341	broad.mit.edu	37	3	97851849	97851849	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:97851849C>T	uc011bgt.1	+	1	308	c.308C>T	c.(307-309)TCG>TTG	p.S103L		NM_001005338	NP_001005338	A6NKK0	OR5H1_HUMAN	olfactory receptor, family 5, subfamily H,	103	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2						CAGTTTTTTTCGTTTGCAATC	0.393													44	92					0	0	0.011902	0	0
OR5H14	403273	broad.mit.edu	37	3	97868678	97868678	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:97868678T>C	uc003dsg.1	+	1	449	c.449T>C	c.(448-450)GTA>GCA	p.V150A		NM_001005514	NP_001005514	A6NHG9	O5H14_HUMAN	olfactory receptor, family 5, subfamily H,	150	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TTGTCATATGTAGGTGGTCTT	0.378													19	98					0	0	0.010504	0	0
OR5H6	79295	broad.mit.edu	37	3	97983425	97983425	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:97983425C>T	uc003dsi.1	+	1	297	c.297C>T	c.(295-297)ATC>ATT	p.I99I		NM_001005479	NP_001005479	Q8NGV6	OR5H6_HUMAN	olfactory receptor, family 5, subfamily H,	99	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|large_intestine(1)	3						AGATGCTGATCAACTTCTTAG	0.408													25	62					0	0	0.010818	0	0
OR5K2	402135	broad.mit.edu	37	3	98217208	98217208	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:98217208G>A	uc011bgx.1	+	1	684	c.684G>A	c.(682-684)ATG>ATA	p.M228I		NM_001004737	NP_001004737	Q8NHB8	OR5K2_HUMAN	olfactory receptor, family 5, subfamily K,	228	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2						TTTTCAGAATGAAATCCAAGG	0.343													19	32					0	0	0.007413	0	0
GPR15	2838	broad.mit.edu	37	3	98251319	98251319	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:98251319G>A	uc011bgy.1	+	1	442	c.442G>A	c.(442-444)GAC>AAC	p.D148N		NM_005290	NP_005281	P49685	GPR15_HUMAN	G protein-coupled receptor 15	148	Cytoplasmic (Potential).					integral to plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(1)	1		Lung NSC(201;7.93e-06)|all_neural(597;0.00172)|Hepatocellular(537;0.00825)|Myeloproliferative disorder(1037;0.0255)		Lung(72;0.246)		CAGAAGGACAGACTGTGCATA	0.522													13	28					0	0	0.013537	0	0
TMEM45A	55076	broad.mit.edu	37	3	100277280	100277280	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:100277280G>A	uc003dtz.1	+	4	748	c.435G>A	c.(433-435)CGG>CGA	p.R145R	TMEM45A_uc003dua.1_Silent_p.R161R	NM_018004	NP_060474	Q9NWC5	TM45A_HUMAN	transmembrane protein 45A	145						integral to membrane				skin(2)|ovary(1)	3						CTCATGGCCGGGAAATGCTGG	0.483													10	74					0	0	0.006214	0	0
IMPG2	50939	broad.mit.edu	37	3	100962396	100962396	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:100962396G>A	uc003duq.1	-	13	2982	c.2779C>T	c.(2779-2781)CTG>TTG	p.L927L	IMPG2_uc011bhe.1_Silent_p.L790L	NM_016247	NP_057331	Q9BZV3	IMPG2_HUMAN	interphotoreceptor matrix proteoglycan 2	927	Extracellular (Potential).|SEA 2.				visual perception	integral to membrane|proteinaceous extracellular matrix	extracellular matrix structural constituent|heparin binding|hyaluronic acid binding|receptor activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)	3						CTTTGCTCCAGGGCTTTATAC	0.413													7	20					0	0	0.004482	0	0
CCDC54	84692	broad.mit.edu	37	3	107096817	107096817	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:107096817C>T	uc003dwi.1	+	1	630	c.383C>T	c.(382-384)TCT>TTT	p.S128F		NM_032600	NP_115989	Q8NEL0	CCD54_HUMAN	coiled-coil domain containing 54	128	Potential.										0						GATATCCTCTCTATGAAAGAA	0.393													5	12					0	0	0.001984	0	0
TRAT1	50852	broad.mit.edu	37	3	108568024	108568024	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:108568024G>A	uc003dxi.1	+	5	370	c.226G>A	c.(226-228)GAA>AAA	p.E76K	TRAT1_uc010hpx.1_Missense_Mutation_p.E39K	NM_016388	NP_057472	Q6PIZ9	TRAT1_HUMAN	T-cell receptor interacting molecule	76	Cytoplasmic (Potential).				cellular defense response|negative regulation of receptor recycling|negative regulation of transport|positive regulation of calcium-mediated signaling|positive regulation of T cell receptor signaling pathway|T cell receptor signaling pathway	integral to plasma membrane|T cell receptor complex	phosphatidylinositol-4,5-bisphosphate 3-kinase activity|transmembrane receptor protein tyrosine kinase adaptor activity			skin(1)	1						ACCAATGGATGAAAATTGCTA	0.343													9	28					0	0	0.004482	0	0
TRAT1	50852	broad.mit.edu	37	3	108568080	108568080	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:108568080G>A	uc003dxi.1	+	5	426	c.282G>A	c.(280-282)CAG>CAA	p.Q94Q	TRAT1_uc010hpx.1_Silent_p.Q57Q	NM_016388	NP_057472	Q6PIZ9	TRAT1_HUMAN	T-cell receptor interacting molecule	94	Cytoplasmic (Potential).				cellular defense response|negative regulation of receptor recycling|negative regulation of transport|positive regulation of calcium-mediated signaling|positive regulation of T cell receptor signaling pathway|T cell receptor signaling pathway	integral to plasma membrane|T cell receptor complex	phosphatidylinositol-4,5-bisphosphate 3-kinase activity|transmembrane receptor protein tyrosine kinase adaptor activity			skin(1)	1						ATAAGATGCAGGAAGCCACCC	0.368													12	34					0	0	0.013537	0	0
MORC1	27136	broad.mit.edu	37	3	108682323	108682324	+	Missense_Mutation	DNP	AG	CA	CA			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:108682323_108682324AG>CA	uc003dxl.2	-	27	2823_2824	c.2736_2737CT>TG	c.(2734-2739)ATCTCT>ATTGCT	p.S913A	MORC1_uc011bhn.1_Missense_Mutation_p.S892A	NM_014429	NP_055244	Q86VD1	MORC1_HUMAN	MORC family CW-type zinc finger 1	913	Potential.				cell differentiation|multicellular organismal development|spermatogenesis	nucleus	ATP binding|zinc ion binding			ovary(3)|skin(3)|breast(2)	8						TTATCCTCAGAGATTTTTCTTT	0.292													12	42					0	0	0.004672	0	0
DPPA4	55211	broad.mit.edu	37	3	109049513	109049513	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:109049513C>T	uc003dxq.3	-	5	592	c.537G>A	c.(535-537)CTG>CTA	p.L179L	DPPA4_uc011bho.1_Intron|DPPA4_uc011bhp.1_Silent_p.L179L	NM_018189	NP_060659	Q7L190	DPPA4_HUMAN	developmental pluripotency associated 4	179						nucleus	protein binding			upper_aerodigestive_tract(1)	1						TGGAATTTTCCAGGGCAGGCG	0.527													17	58					0	0	0.007413	0	0
ZBED2	79413	broad.mit.edu	37	3	111313022	111313022	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:111313022C>T	uc003dxy.2	-	2	912	c.27G>A	c.(25-27)GAG>GAA	p.E9E	CD96_uc003dxv.2_Intron|CD96_uc003dxw.2_Intron|CD96_uc003dxx.2_Intron|CD96_uc010hpy.1_Intron	NM_024508	NP_078784	Q9BTP6	ZBED2_HUMAN	zinc finger, BED domain containing 2	9							DNA binding|metal ion binding			skin(1)	1						TTGTTCCCTCCTCTTCCTCGT	0.453													15	39					0	0	0.004990	0	0
PHLDB2	90102	broad.mit.edu	37	3	111632319	111632319	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:111632319G>A	uc010hqa.2	+	3	1900	c.1489G>A	c.(1489-1491)GAA>AAA	p.E497K	PHLDB2_uc003dyc.2_Missense_Mutation_p.E524K|PHLDB2_uc003dyd.2_Missense_Mutation_p.E497K|PHLDB2_uc003dyg.2_Missense_Mutation_p.E497K|PHLDB2_uc003dyh.2_Missense_Mutation_p.E497K|PHLDB2_uc003dyi.2_Missense_Mutation_p.E83K|PHLDB2_uc003dyf.3_Missense_Mutation_p.E497K	NM_001134438	NP_001127910	Q86SQ0	PHLB2_HUMAN	pleckstrin homology-like domain, family B,	497						cytoplasm|intermediate filament cytoskeleton|plasma membrane				ovary(4)|skin(2)	6						TGTGTTTGAGGAAGCCCTCAT	0.532													25	59					0	0	0.005443	0	0
GCET2	257144	broad.mit.edu	37	3	111844080	111844080	+	Missense_Mutation	SNP	G	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:111844080G>C	uc003dys.1	-	5	362	c.212C>G	c.(211-213)CCC>CGC	p.P71R	C3orf52_uc011bht.1_Intron|C3orf52_uc003dyr.1_Intron|GCET2_uc003dyt.1_Missense_Mutation_p.P5R	NM_152785	NP_689998	Q8N6F7	GCET2_HUMAN	germinal center expressed transcript 2 isoform	71						mitochondrion					0						TACCTGGATGGGAGTAGATGA	0.403													7	51					0	0	0.006214	0	0
BTLA	151888	broad.mit.edu	37	3	112190185	112190185	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:112190185C>T	uc003dza.3	-	3	624	c.421G>A	c.(421-423)GAA>AAA	p.E141K	BTLA_uc003dzb.3_Intron	NM_181780	NP_861445	Q7Z6A9	BTLA_HUMAN	B and T lymphocyte associated isoform 1	141	Extracellular (Potential).				T cell costimulation		receptor activity				0		Acute lymphoblastic leukemia(4;1.34e-07)|all_hematologic(4;0.000361)				GAGGGTCGTTCTGAGGCACTT	0.468													23	40					0	0	0.006320	0	0
GRAMD1C	54762	broad.mit.edu	37	3	113634601	113634601	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:113634601C>T	uc003eaq.3	+	10	1082	c.1006C>T	c.(1006-1008)CAT>TAT	p.H336Y	GRAMD1C_uc011bil.1_RNA|GRAMD1C_uc011bim.1_RNA|GRAMD1C_uc003ear.2_Missense_Mutation_p.H169Y|GRAMD1C_uc003eas.2_Missense_Mutation_p.H131Y|GRAMD1C_uc003eat.2_5'UTR	NM_017577	NP_060047	Q8IYS0	GRM1C_HUMAN	GRAM domain containing 1C	336						integral to membrane				ovary(2)|skin(1)	3						CCGTATTTTTCATATCAGTGC	0.338													10	39					0	0	0.008291	0	0
KIAA1407	57577	broad.mit.edu	37	3	113772443	113772444	+	Splice_Site	DNP	CC	TT	TT			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:113772443_113772444CC>TT	uc003eax.2	-	2	276	c.129_splice	c.e2+1	p.K43_splice	KIAA1407_uc011bin.1_Intron|KIAA1407_uc011bio.1_Intron|KIAA1407_uc011bip.1_Intron	NM_020817	NP_065868	Q8NCU4	K1407_HUMAN	hypothetical protein LOC57577											ovary(2)	2						AATATCCTTACCTTTATCCAGT	0.322													3	17					0	0	0.004672	0	0
TIGIT	201633	broad.mit.edu	37	3	114014666	114014666	+	Silent	SNP	C	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:114014666C>G	uc003ebg.1	+	2	370	c.336C>G	c.(334-336)ACC>ACG	p.T112T		NM_173799	NP_776160	Q495A1	TIGIT_HUMAN	T cell immunoreceptor with Ig and ITIM domains	112	Extracellular (Potential).|Ig-like V-type.				negative regulation of interleukin-12 production|negative regulation of T cell activation|positive regulation of interleukin-10 production	cell surface|integral to membrane|plasma membrane	protein binding			central_nervous_system(1)	1						TCTATCACACCTACCCTGATG	0.562													11	40					0	0	0.013537	0	0
LSAMP	4045	broad.mit.edu	37	3	115805178	115805178	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:115805178G>A	uc003ebt.2	-	2	881	c.381C>T	c.(379-381)ATC>ATT	p.I127I	LSAMP_uc011bis.1_Silent_p.I127I	NM_002338	NP_002329	Q13449	LSAMP_HUMAN	limbic system-associated membrane protein	127					cell adhesion|nervous system development	anchored to membrane|plasma membrane					0		all_cancers(1;0.00189)|all_epithelial(1;0.0366)|Myeloproliferative disorder(1037;0.17)|all_neural(597;0.208)|Lung NSC(201;0.215)		GBM - Glioblastoma multiforme(114;0.00117)|LUSC - Lung squamous cell carcinoma(41;0.0407)|Lung(219;0.152)		TACCTTGTACGATCAAGTAAA	0.443													5	22					0	0	0.000602	0	0
TMEM39A	55254	broad.mit.edu	37	3	119156934	119156934	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:119156934G>A	uc003eck.1	-	6	955	c.592C>T	c.(592-594)CCT>TCT	p.P198S	TMEM39A_uc003ecl.1_Missense_Mutation_p.P46S	NM_018266	NP_060736	Q9NV64	TM39A_HUMAN	transmembrane protein 39A	198	Helical; (Potential).					integral to membrane				ovary(1)|breast(1)	2				GBM - Glioblastoma multiforme(114;0.244)		CAGCAAAGAGGAACATAAACA	0.383													5	22					0	0	0.000602	0	0
TMEM39A	55254	broad.mit.edu	37	3	119165876	119165876	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:119165876G>A	uc003eck.1	-	5	927	c.564C>T	c.(562-564)TTC>TTT	p.F188F	TMEM39A_uc003ecl.1_Silent_p.F36F	NM_018266	NP_060736	Q9NV64	TM39A_HUMAN	transmembrane protein 39A	188	Helical; (Potential).					integral to membrane				ovary(1)|breast(1)	2				GBM - Glioblastoma multiforme(114;0.244)		GGTAGCCAAGGAAAAGGAGAT	0.393													4	17					0	0	0.009096	0	0
C3orf15	89876	broad.mit.edu	37	3	119427482	119427482	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:119427482C>T	uc010hqx.1	+	4	481	c.404C>T	c.(403-405)CCT>CTT	p.P135L	C3orf15_uc003edc.2_Missense_Mutation_p.P135L|C3orf15_uc010hqy.1_Missense_Mutation_p.P135L|C3orf15_uc003ede.3_Missense_Mutation_p.P135L|C3orf15_uc010hqz.2_Missense_Mutation_p.P73L|C3orf15_uc011bjd.1_Missense_Mutation_p.P9L|C3orf15_uc011bje.1_Missense_Mutation_p.P115L|C3orf15_uc010hra.1_5'UTR			Q7Z4T9	AAT1_HUMAN	RecName: Full=AMY-1-associating protein expressed in testis 1;          Short=AAT-1;	135						mitochondrion	protein binding			ovary(2)|pancreas(1)	3				GBM - Glioblastoma multiforme(114;0.186)		TATGAAGATCCTGAAGTTACT	0.289													11	31					0	0	0.002450	0	0
STXBP5L	9515	broad.mit.edu	37	3	121126146	121126146	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:121126146G>A	uc003eec.3	+	24	2856	c.2716G>A	c.(2716-2718)GGT>AGT	p.G906S	STXBP5L_uc011bji.1_Missense_Mutation_p.G882S	NM_014980	NP_055795	Q9Y2K9	STB5L_HUMAN	syntaxin binding protein 5-like	906	WD 12.				exocytosis|protein transport	cytoplasm|integral to membrane|plasma membrane				ovary(7)|skin(2)	9				GBM - Glioblastoma multiforme(114;0.0694)		GGACCGAATGGGTGGATTAAT	0.383													14	26					0	0	0.001855	0	0
FBXO40	51725	broad.mit.edu	37	3	121341093	121341093	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:121341093C>T	uc003eeg.2	+	3	1027	c.817C>T	c.(817-819)CAG>TAG	p.Q273*		NM_016298	NP_057382	Q9UH90	FBX40_HUMAN	F-box protein 40	273					muscle cell differentiation	centrosome|nucleus	ubiquitin-protein ligase activity|zinc ion binding			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5				GBM - Glioblastoma multiforme(114;0.189)		ACAGGAAAATCAGAAGCAGCA	0.493													11	32					0	0	0.008291	0	0
FBXO40	51725	broad.mit.edu	37	3	121341642	121341642	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:121341642C>T	uc003eeg.2	+	3	1576	c.1366C>T	c.(1366-1368)CAC>TAC	p.H456Y		NM_016298	NP_057382	Q9UH90	FBX40_HUMAN	F-box protein 40	456					muscle cell differentiation	centrosome|nucleus	ubiquitin-protein ligase activity|zinc ion binding			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5				GBM - Glioblastoma multiforme(114;0.189)		AGGGGGACTCCACGTGGAGCT	0.522													11	27					0	0	0.008291	0	0
FBXO40	51725	broad.mit.edu	37	3	121341815	121341815	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:121341815C>T	uc003eeg.2	+	3	1749	c.1539C>T	c.(1537-1539)CTC>CTT	p.L513L		NM_016298	NP_057382	Q9UH90	FBX40_HUMAN	F-box protein 40	513					muscle cell differentiation	centrosome|nucleus	ubiquitin-protein ligase activity|zinc ion binding			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5				GBM - Glioblastoma multiforme(114;0.189)		GATGCCCCCTCGCCTACTTGG	0.483													12	31					0	0	0.001855	0	0
SLC15A2	6565	broad.mit.edu	37	3	121613360	121613360	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:121613360C>T	uc003eep.2	+	1	190	c.37C>T	c.(37-39)CTT>TTT	p.L13F	SLC15A2_uc011bjn.1_Missense_Mutation_p.L13F	NM_021082	NP_066568	Q16348	S15A2_HUMAN	peptide transporter 2 isoform a	13					protein transport	integral to plasma membrane	peptide:hydrogen symporter activity|protein binding			skin(1)	1				GBM - Glioblastoma multiforme(114;0.0967)	Cefadroxil(DB01140)	CAAGGAAACTCTTTTTTCACC	0.483													51	112					0	0	0.014410	0	0
SLC15A2	6565	broad.mit.edu	37	3	121643813	121643813	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:121643813C>T	uc003eep.2	+	13	1210	c.1057C>T	c.(1057-1059)CTT>TTT	p.L353F	SLC15A2_uc011bjn.1_Missense_Mutation_p.L322F	NM_021082	NP_066568	Q16348	S15A2_HUMAN	peptide transporter 2 isoform a	353	Helical; (Potential).				protein transport	integral to plasma membrane	peptide:hydrogen symporter activity|protein binding			skin(1)	1				GBM - Glioblastoma multiforme(114;0.0967)	Cefadroxil(DB01140)	CCTTCTGGTTCTTATCTTCAT	0.383													25	98					0	0	0.004656	0	0
SLC15A2	6565	broad.mit.edu	37	3	121658222	121658222	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:121658222G>A	uc003eep.2	+	20	1941	c.1788G>A	c.(1786-1788)TGG>TGA	p.W596*	SLC15A2_uc011bjn.1_Nonsense_Mutation_p.W565*	NM_021082	NP_066568	Q16348	S15A2_HUMAN	peptide transporter 2 isoform a	596					protein transport	integral to plasma membrane	peptide:hydrogen symporter activity|protein binding			skin(1)	1				GBM - Glioblastoma multiforme(114;0.0967)	Cefadroxil(DB01140)	TTCAGGCCTGGAAGATTGAAG	0.448													26	36					0	0	0.008361	0	0
ILDR1	286676	broad.mit.edu	37	3	121712060	121712060	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:121712060G>A	uc003ees.2	-	7	1642	c.1536C>T	c.(1534-1536)TAC>TAT	p.Y512Y	ILDR1_uc003eeq.2_Silent_p.Y480Y|ILDR1_uc003eer.2_Silent_p.Y468Y|ILDR1_uc010hrg.2_Silent_p.Y423Y	NM_175924	NP_787120	Q86SU0	ILDR1_HUMAN	immunoglobulin-like domain containing receptor	512	Cytoplasmic (Potential).					cytosol|integral to membrane|plasma membrane	receptor activity			skin(1)	1				GBM - Glioblastoma multiforme(114;0.156)		CAAGTGAGCGGTAGCTAGGCG	0.642													3	11					0	0	0.004672	0	0
CASR	846	broad.mit.edu	37	3	121980613	121980613	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:121980613C>T	uc003eev.3	+	4	1103	c.731C>T	c.(730-732)TCC>TTC	p.S244F	CASR_uc003eew.3_Missense_Mutation_p.S244F	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	244	Extracellular (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	GAACTCATCTCCCAGTACTCT	0.498													8	131					0	0	0.010729	0	0
CASR	846	broad.mit.edu	37	3	121981057	121981057	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:121981057G>A	uc003eev.3	+	4	1547	c.1175G>A	c.(1174-1176)CGA>CAA	p.R392Q	CASR_uc003eew.3_Missense_Mutation_p.R392Q	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	392	Extracellular (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	ACAGCCTTCCGACCCCTCTGT	0.493													18	22					0	0	0.007413	0	0
CASR	846	broad.mit.edu	37	3	122003444	122003444	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:122003444C>T	uc003eev.3	+	7	3015	c.2643C>T	c.(2641-2643)TTC>TTT	p.F881F	CASR_uc003eew.3_Silent_p.F891F	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	881	Cytoplasmic (Potential).|Interaction with RNF19A.		F -> L (in FHH; mutant CASR has a right- shifted dose-response to extracellular calcium concentrations; activated by a higher calcium concentrations than the wild-type).		anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	CTCACGCTTTCAAGGTGGCTG	0.617													9	10					0	0	0.008291	0	0
ADCY5	111	broad.mit.edu	37	3	123022947	123022947	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:123022947G>A	uc003egh.1	-	13	2526	c.2526C>T	c.(2524-2526)ATC>ATT	p.I842I	ADCY5_uc003egg.1_Silent_p.I475I|ADCY5_uc003egi.1_Silent_p.I401I	NM_183357	NP_899200	O95622	ADCY5_HUMAN	adenylate cyclase 5	842	Helical; (Potential).				activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding			ovary(4)	4				GBM - Glioblastoma multiforme(114;0.0342)		ACACCAGGGTGATGGTGAACA	0.498													9	20					0	0	0.010729	0	0
MYLK	4638	broad.mit.edu	37	3	123376184	123376184	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:123376184C>T	uc003ego.2	-	24	4359	c.4077G>A	c.(4075-4077)GGG>GGA	p.G1359G	MYLK_uc010hrr.2_5'UTR|MYLK_uc011bjv.1_Silent_p.G159G|MYLK_uc011bjw.1_Silent_p.G1359G|MYLK_uc003egp.2_Silent_p.G1290G|MYLK_uc003egq.2_Silent_p.G1359G|MYLK_uc003egr.2_Silent_p.G1290G|MYLK_uc003egs.2_Silent_p.G1183G	NM_053025	NP_444253	Q15746	MYLK_HUMAN	myosin light chain kinase isoform 1	1359	Actin-binding (calcium/calmodulin- insensitive) (By similarity).|Fibronectin type-III.				aorta smooth muscle tissue morphogenesis|muscle contraction	cytosol	actin binding|ATP binding|calmodulin binding|metal ion binding|myosin light chain kinase activity			ovary(6)|skin(2)|stomach(1)	9		Lung NSC(201;0.0496)		GBM - Glioblastoma multiforme(114;0.0736)		CAGCACTGCCCCCATCATATG	0.567													7	24					0	0	0.003080	0	0
MYLK	4638	broad.mit.edu	37	3	123419455	123419455	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:123419455G>A	uc003ego.2	-	18	3142	c.2860C>T	c.(2860-2862)CGC>TGC	p.R954C	MYLK_uc011bjw.1_Missense_Mutation_p.R954C|MYLK_uc003egp.2_Missense_Mutation_p.R885C|MYLK_uc003egq.2_Missense_Mutation_p.R954C|MYLK_uc003egr.2_Missense_Mutation_p.R885C|MYLK_uc003egs.2_Missense_Mutation_p.R778C|MYLK_uc003egt.2_Missense_Mutation_p.R145C	NM_053025	NP_444253	Q15746	MYLK_HUMAN	myosin light chain kinase isoform 1	954	Actin-binding (calcium/calmodulin- sensitive) (By similarity).|1-4.|5 X 28 AA approximate tandem repeats.|Calmodulin-binding (By similarity).				aorta smooth muscle tissue morphogenesis|muscle contraction	cytosol	actin binding|ATP binding|calmodulin binding|metal ion binding|myosin light chain kinase activity			ovary(6)|skin(2)|stomach(1)	9		Lung NSC(201;0.0496)		GBM - Glioblastoma multiforme(114;0.0736)		AGGACAGAGCGAAAATCGACC	0.597													15	30					0	0	0.003163	0	0
MYLK	4638	broad.mit.edu	37	3	123451915	123451915	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:123451915G>A	uc003ego.2	-	11	1626	c.1344C>T	c.(1342-1344)TTC>TTT	p.F448F	MYLK_uc011bjw.1_Silent_p.F448F|MYLK_uc003egp.2_Intron|MYLK_uc003egq.2_Silent_p.F448F|MYLK_uc003egr.2_Intron|MYLK_uc003egs.2_Silent_p.F272F	NM_053025	NP_444253	Q15746	MYLK_HUMAN	myosin light chain kinase isoform 1	448	Ig-like C2-type 3.				aorta smooth muscle tissue morphogenesis|muscle contraction	cytosol	actin binding|ATP binding|calmodulin binding|metal ion binding|myosin light chain kinase activity			ovary(6)|skin(2)|stomach(1)	9		Lung NSC(201;0.0496)		GBM - Glioblastoma multiforme(114;0.0736)		TGCCTTCCAGGAACCAGGCCA	0.567													9	20					0	0	0.010729	0	0
CCDC14	64770	broad.mit.edu	37	3	123633917	123633917	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:123633917G>A	uc011bjx.1	-	13	2662	c.2571C>T	c.(2569-2571)CTC>CTT	p.L857L	CCDC14_uc003egv.3_Silent_p.L498L|CCDC14_uc003egx.3_Silent_p.L657L|CCDC14_uc010hrt.2_Silent_p.L816L|CCDC14_uc003egy.3_Silent_p.L657L|CCDC14_uc003egz.2_3'UTR	NM_022757	NP_073594	Q49A88	CCD14_HUMAN	coiled-coil domain containing 14	857						centrosome					0		Lung NSC(201;0.0371)|Prostate(884;0.0405)|Myeloproliferative disorder(1037;0.205)		Lung(219;0.00942)|GBM - Glioblastoma multiforme(114;0.159)		TTATTTTCTTGAGGAGCTGTG	0.458													9	30					0	0	0.008291	0	0
KALRN	8997	broad.mit.edu	37	3	123946890	123946890	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:123946890G>A	uc003ehg.2	+	2	248	c.121G>A	c.(121-123)GAA>AAA	p.E41K	KALRN_uc010hrv.1_Missense_Mutation_p.E41K|KALRN_uc003ehf.1_Missense_Mutation_p.E41K|KALRN_uc011bjy.1_Missense_Mutation_p.E41K	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	41	CRAL-TRIO.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						TATCCTAAAGGAAAAGGTGGC	0.458													26	120					0	0	0.006320	0	0
KALRN	8997	broad.mit.edu	37	3	123946904	123946904	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:123946904C>T	uc003ehg.2	+	2	262	c.135C>T	c.(133-135)TTC>TTT	p.F45F	KALRN_uc010hrv.1_Silent_p.F45F|KALRN_uc003ehf.1_Silent_p.F45F|KALRN_uc011bjy.1_Silent_p.F45F	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	45	CRAL-TRIO.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						AGGTGGCCTTCGTGTCTGGTG	0.448													39	90					0	0	0.008740	0	0
KALRN	8997	broad.mit.edu	37	3	123987907	123987907	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:123987907C>T	uc003ehg.2	+	5	895	c.768C>T	c.(766-768)ATC>ATT	p.I256I	KALRN_uc010hrv.1_Silent_p.I256I|KALRN_uc003ehf.1_Silent_p.I256I|KALRN_uc011bjy.1_Silent_p.I256I	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	256	Spectrin 1.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						TGCAGTGCATCCGCTGCAGCG	0.622													7	16					0	0	0.001984	0	0
KALRN	8997	broad.mit.edu	37	3	124153247	124153247	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:124153247G>A	uc003ehg.2	+	17	3044	c.2917G>A	c.(2917-2919)GAT>AAT	p.D973N	KALRN_uc010hrv.1_Missense_Mutation_p.D964N|KALRN_uc003ehf.1_Missense_Mutation_p.D973N|KALRN_uc011bjy.1_Missense_Mutation_p.D964N|KALRN_uc003ehh.1_Missense_Mutation_p.D319N	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	973	Spectrin 4.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						CGGCCACTACGATGCCGATGC	0.582													13	25					0	0	0.001855	0	0
KALRN	8997	broad.mit.edu	37	3	124181432	124181432	+	Missense_Mutation	SNP	A	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:124181432A>T	uc003ehg.2	+	25	4104	c.3977A>T	c.(3976-3978)GAG>GTG	p.E1326V	KALRN_uc010hrv.1_Missense_Mutation_p.E1317V|KALRN_uc003ehf.1_Missense_Mutation_p.E1326V|KALRN_uc011bjy.1_Missense_Mutation_p.E1317V|KALRN_uc003ehh.1_Missense_Mutation_p.E672V	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	1326	DH 1.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						CTCAATAAAGAGCATATCATC	0.478													10	23					0	0	0.010729	0	0
KALRN	8997	broad.mit.edu	37	3	124351433	124351433	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:124351433G>A	uc003ehg.2	+	35	5470	c.5343G>A	c.(5341-5343)GGG>GGA	p.G1781G	KALRN_uc003ehi.2_Silent_p.G154G|KALRN_uc003ehk.2_Silent_p.G84G|KALRN_uc003ehj.2_Silent_p.G84G	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	1781					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						TTAACAGCGGGAAGGCAGATG	0.557													19	44					0	0	0.010504	0	0
UMPS	7372	broad.mit.edu	37	3	124456812	124456812	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:124456812C>T	uc003ehl.3	+	3	814	c.708C>T	c.(706-708)ATC>ATT	p.I236I	UMPS_uc003ehm.3_RNA|UMPS_uc011bka.1_Silent_p.I58I|UMPS_uc011bkb.1_Silent_p.I144I|UMPS_uc011bkc.1_Silent_p.I58I|UMPS_uc003ehn.3_Silent_p.I58I|UMPS_uc011bkd.1_Silent_p.I58I	NM_000373	NP_000364	P11172	UMPS_HUMAN	uridine monophosphate synthase	236	OMPdecase.				'de novo' pyrimidine base biosynthetic process|'de novo' UMP biosynthetic process|pyrimidine nucleoside biosynthetic process	cytosol|nucleus	orotate phosphoribosyltransferase activity|orotidine-5'-phosphate decarboxylase activity			kidney(1)	1				GBM - Glioblastoma multiforme(114;0.146)		TGCCCAGGATCCACCCAGTTG	0.493													5	45					0	0	0.001984	0	0
MUC13	56667	broad.mit.edu	37	3	124642454	124642454	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:124642454G>A	uc003ehq.1	-	3	578	c.554C>T	c.(553-555)TCG>TTG	p.S185L		NM_033049	NP_149038	Q9H3R2	MUC13_HUMAN	mucin 13, epithelial transmembrane	185	EGF-like 1.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane					0						AACACATAACGAATTATCTGC	0.383													13	28					0	0	0.001855	0	0
SLC12A8	84561	broad.mit.edu	37	3	124802800	124802800	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:124802800G>A	uc003ehv.3	-	14	2190	c.2079C>T	c.(2077-2079)TTC>TTT	p.F693F	SLC12A8_uc003ehw.3_Silent_p.F722F|SLC12A8_uc003eht.3_Silent_p.F494F|SLC12A8_uc003ehu.3_Silent_p.F446F|SLC12A8_uc010hry.2_3'UTR	NM_024628	NP_078904	A0AV02	S12A8_HUMAN	solute carrier family 12, member 8	693					potassium ion transport	integral to membrane	symporter activity				0						CCCGAGTGGCGAAGTCTGCAT	0.587													5	8					0	0	0.000602	0	0
ALDH1L1	10840	broad.mit.edu	37	3	125850269	125850269	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:125850269G>A	uc003eim.1	-	13	1771	c.1581C>T	c.(1579-1581)ATC>ATT	p.I527I	ALDH1L1_uc010hse.1_Intron|ALDH1L1_uc011bki.1_Silent_p.I426I|ALDH1L1_uc003eio.2_Silent_p.I229I	NM_012190	NP_036322	O75891	AL1L1_HUMAN	aldehyde dehydrogenase 1 family, member L1	527	Aldehyde dehydrogenase.				10-formyltetrahydrofolate catabolic process|biosynthetic process		acyl carrier activity|cofactor binding|formyltetrahydrofolate dehydrogenase activity|hydroxymethyl-, formyl- and related transferase activity|methyltransferase activity			large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4				GBM - Glioblastoma multiforme(114;0.0462)	Tetrahydrofolic acid(DB00116)	GGAAGGTCTGGATGGACATGC	0.617													50	88					0	0	0.014410	0	0
ALDH1L1	10840	broad.mit.edu	37	3	125879750	125879750	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:125879750C>T	uc003eim.1	-	2	263	c.73G>A	c.(73-75)GAA>AAA	p.E25K	ALDH1L1_uc010hse.1_RNA|ALDH1L1_uc011bki.1_Missense_Mutation_p.E25K|ALDH1L1_uc010hsf.1_5'UTR|ALDH1L1_uc003eip.1_5'Flank|ALDH1L1_uc011bkj.1_5'UTR	NM_012190	NP_036322	O75891	AL1L1_HUMAN	aldehyde dehydrogenase 1 family, member L1	25	GART.				10-formyltetrahydrofolate catabolic process|biosynthetic process		acyl carrier activity|cofactor binding|formyltetrahydrofolate dehydrogenase activity|hydroxymethyl-, formyl- and related transferase activity|methyltransferase activity			large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4				GBM - Glioblastoma multiforme(114;0.0462)	Tetrahydrofolic acid(DB00116)	CCCACCACTTCGTGGCCCTCC	0.587													25	54					0	0	0.005443	0	0
C3orf22	152065	broad.mit.edu	37	3	126270914	126270914	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:126270914G>A	uc003ejb.2	-	3	470	c.141C>T	c.(139-141)GTC>GTT	p.V47V		NM_152533	NP_689746	Q8N5N4	CC022_HUMAN	hypothetical protein LOC152065	47											0				GBM - Glioblastoma multiforme(114;0.147)		AGTCGTTTGTGACCTCCCAGG	0.617													16	44					0	0	0.004007	0	0
PLXNA1	5361	broad.mit.edu	37	3	126723967	126723967	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:126723967C>T	uc003ejg.2	+	6	1713	c.1709C>T	c.(1708-1710)TCA>TTA	p.S570L		NM_032242	NP_115618	Q9UIW2	PLXA1_HUMAN	plexin A1	593	Extracellular (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane	semaphorin receptor activity			ovary(1)|pancreas(1)|skin(1)	3				GBM - Glioblastoma multiforme(114;0.155)		CCTGACCTCTCAGCTGGCGTC	0.662													10	22					0	0	0.006214	0	0
PODXL2	50512	broad.mit.edu	37	3	127358261	127358261	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:127358261C>T	uc003ejq.2	+	2	268	c.244C>T	c.(244-246)CCC>TCC	p.P82S		NM_015720	NP_056535	Q9NZ53	PDXL2_HUMAN	podocalyxin-like 2 precursor	82	Extracellular (Potential).				leukocyte tethering or rolling	integral to plasma membrane	glycosaminoglycan binding|protein binding			ovary(1)|central_nervous_system(1)	2						CTCAGGCTTCCCCAGCGAAGA	0.602													7	20					0	0	0.003080	0	0
ACAD9	28976	broad.mit.edu	37	3	128627105	128627105	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:128627105C>T	uc003ela.3	+	13	1558	c.1356C>T	c.(1354-1356)ATC>ATT	p.I452I	ACAD9_uc010hsw.1_Silent_p.I329I|ACAD9_uc011bks.1_Silent_p.I329I|ACAD9_uc003elb.2_Silent_p.I329I|ACAD9_uc003eld.1_RNA|ACAD9_uc003ele.2_Silent_p.I104I	NM_014049	NP_054768	Q9H845	ACAD9_HUMAN	acyl-Coenzyme A dehydrogenase family, member 9	452						mitochondrion	acyl-CoA dehydrogenase activity|flavin adenine dinucleotide binding			ovary(2)|central_nervous_system(1)	3						CTACCAGGATCCAGTAGGTGC	0.592													25	60					0	0	0.003330	0	0
GP9	2815	broad.mit.edu	37	3	128780916	128780916	+	Missense_Mutation	SNP	C	T	T	rs139914505	by1000genomes	TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:128780916C>T	uc003elm.2	+	3	521	c.334C>T	c.(334-336)CGC>TGC	p.R112C		NM_000174	NP_000165	P14770	GPIX_HUMAN	glycoprotein IX (platelet) precursor	112	LRRCT.|Extracellular (Potential).				blood coagulation, intrinsic pathway|cell adhesion|platelet activation	integral to plasma membrane	protein binding				0					Quinine(DB00468)	GCTGCAGGTCCGCTGTGCCAG	0.706													3	10					0	0	0.004672	0	0
COL29A1	256076	broad.mit.edu	37	3	130159251	130159251	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:130159251G>A	uc010htj.1	+	35	6563	c.6069G>A	c.(6067-6069)ATG>ATA	p.M2023I	COL29A1_uc010hti.1_RNA|COL29A1_uc010htk.1_Missense_Mutation_p.M62I	NM_153264	NP_694996	A8TX70	CO6A5_HUMAN	collagen, type XXIX, alpha 1	2023	VWFA 9.|Nonhelical region.				axon guidance|cell adhesion	collagen					0						GGAGAAAGATGGGTACAGTAA	0.398													10	38					0	0	0.006214	0	0
CPNE4	131034	broad.mit.edu	37	3	131274351	131274351	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:131274351G>A	uc003eok.2	-	12	1541	c.1106C>T	c.(1105-1107)CCA>CTA	p.P369L	CPNE4_uc011blq.1_Missense_Mutation_p.P387L|CPNE4_uc003eol.2_Missense_Mutation_p.P387L|CPNE4_uc003eom.2_Missense_Mutation_p.P369L	NM_130808	NP_570720	Q96A23	CPNE4_HUMAN	copine IV	369	VWFA.									upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						CGTGTACTCTGGAGGTATCCT	0.428													12	38					0	0	0.002450	0	0
CCRL1	51554	broad.mit.edu	37	3	132319397	132319397	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:132319397C>T	uc003eow.2	+	2	239	c.156C>T	c.(154-156)TTC>TTT	p.F52F	ACAD11_uc003eov.3_Intron|ACAD11_uc011blr.1_Intron|CCRL1_uc003eox.2_Silent_p.F52F	NM_016557	NP_057641	Q9NPB9	CCRL1_HUMAN	chemokine (C-C motif) receptor-like 1	52	Helical; Name=1; (Potential).				chemotaxis|immune response	integral to plasma membrane	C-C chemokine receptor activity				0						CAATAGTTTTCGTCATTGGAC	0.383													6	24					0	0	0.001984	0	0
NPHP3	27031	broad.mit.edu	37	3	132409388	132409388	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:132409388G>A	uc003epe.1	-	19	2754	c.2677C>T	c.(2677-2679)CAA>TAA	p.Q893*	NPHP3_uc003epd.1_Nonsense_Mutation_p.Q135*	NM_153240	NP_694972	Q7Z494	NPHP3_HUMAN	nephrocystin 3	893	TPR 2.				maintenance of organ identity|negative regulation of canonical Wnt receptor signaling pathway|photoreceptor cell maintenance|regulation of Wnt receptor signaling pathway, planar cell polarity pathway|Wnt receptor signaling pathway	cilium	protein binding			ovary(1)	1						TAAAGGTTTTGAGACACAAAG	0.358													13	27					0	0	0.003163	0	0
TF	7018	broad.mit.edu	37	3	133475779	133475779	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:133475779C>T	uc003epu.1	+	12	2524	c.796C>T	c.(796-798)CCT>TCT	p.P266S	TF_uc011blt.1_Missense_Mutation_p.P139S|TF_uc003epw.1_Intron|TF_uc003epv.1_Missense_Mutation_p.P266S	NM_001063	NP_001054	P02787	TRFE_HUMAN	transferrin precursor	266	Transferrin-like 1.				cellular iron ion homeostasis|platelet activation|platelet degranulation|transferrin transport|transmembrane transport	apical plasma membrane|basal plasma membrane|coated pit|early endosome|endocytic vesicle|endosome membrane|extracellular region|late endosome|perinuclear region of cytoplasm|recycling endosome|stored secretory granule	ferric iron binding			ovary(1)|skin(1)	2					Aluminium(DB01370)|Bismuth(DB01402)|Iron Dextran(DB00893)	GGCCCAGGTCCCTTCTCATAC	0.587													16	52					0	0	0.008871	0	0
AMOTL2	51421	broad.mit.edu	37	3	134089733	134089734	+	Missense_Mutation	DNP	GG	AA	AA	rs139339298		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:134089733_134089734GG>AA	uc003eqf.2	-	2	833_834	c.716_717CC>TT	c.(715-717)TCC>TTT	p.S239F	AMOTL2_uc003eqg.1_Missense_Mutation_p.S181F|AMOTL2_uc003eqh.1_Missense_Mutation_p.S181F	NM_016201	NP_057285	Q9Y2J4	AMOL2_HUMAN	angiomotin like 2	181										large_intestine(1)	1						GGAAGCTGTGGGAGGAGCTCAT	0.698													11	22					0	0	0.004672	0	0
EPHB1	2047	broad.mit.edu	37	3	134920409	134920409	+	Missense_Mutation	SNP	C	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:134920409C>A	uc003eqt.2	+	12	2444	c.2224C>A	c.(2224-2226)CAT>AAT	p.H742N	EPHB1_uc003equ.2_Missense_Mutation_p.H303N	NM_004441	NP_004432	P54762	EPHB1_HUMAN	ephrin receptor EphB1 precursor	742	Cytoplasmic (Potential).|Protein kinase.					integral to plasma membrane	ATP binding|ephrin receptor activity|protein binding			lung(11)|ovary(6)|stomach(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|pancreas(1)	30						GAATTATGTGCATCGGGACCT	0.537													19	137					1.96292e-10	2.11377e-10	0.010504	1	0
EPHB1	2047	broad.mit.edu	37	3	134920528	134920528	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:134920528C>T	uc003eqt.2	+	12	2563	c.2343C>T	c.(2341-2343)TCC>TCT	p.S781S	EPHB1_uc003equ.2_Silent_p.S342S	NM_004441	NP_004432	P54762	EPHB1_HUMAN	ephrin receptor EphB1 precursor	781	Cytoplasmic (Potential).|Protein kinase.					integral to plasma membrane	ATP binding|ephrin receptor activity|protein binding			lung(11)|ovary(6)|stomach(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|pancreas(1)	30						ACACCAGCTCCTTGGTGAGTC	0.537													5	23					0	0	0.001984	0	0
TMEM22	80723	broad.mit.edu	37	3	136574470	136574470	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:136574470G>A	uc003erf.3	+	2	1382	c.1168G>A	c.(1168-1170)GGC>AGC	p.G390S	TMEM22_uc003erg.3_Missense_Mutation_p.G390S|TMEM22_uc010hub.2_Missense_Mutation_p.G390S	NM_001097600	NP_001091069	Q8TBE7	TMM22_HUMAN	transmembrane protein 22	390	DUF6 2.					Golgi apparatus|integral to membrane				ovary(1)	1						TGTCCTTGCTGGCTATAAACT	0.373													22	65					0	0	0.003954	0	0
CLDN18	51208	broad.mit.edu	37	3	137717715	137717715	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:137717715C>T	uc003ero.1	+	1	58	c.5C>T	c.(4-6)GCC>GTC	p.A2V		NM_001002026	NP_001002026	P56856	CLD18_HUMAN	claudin 18 isoform 2	2	Cytoplasmic (Potential).				calcium-independent cell-cell adhesion|tight junction assembly	integral to membrane|tight junction	identical protein binding|structural molecule activity			upper_aerodigestive_tract(1)|ovary(1)	2						GCCACCATGGCCGTGACTGCC	0.572													13	32					0	0	0.013537	0	0
CLDN18	51208	broad.mit.edu	37	3	137749972	137749972	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:137749972G>A	uc003ero.1	+	5	828	c.775G>A	c.(775-777)GAC>AAC	p.D259N	CLDN18_uc003erp.1_Missense_Mutation_p.D259N|CLDN18_uc010hue.1_Missense_Mutation_p.D215N	NM_001002026	NP_001002026	P56856	CLD18_HUMAN	claudin 18 isoform 2	259	Cytoplasmic (Potential).				calcium-independent cell-cell adhesion|tight junction assembly	integral to membrane|tight junction	identical protein binding|structural molecule activity			upper_aerodigestive_tract(1)|ovary(1)	2						TTCCAAGCACGACTATGTGTA	0.493													13	48					0	0	0.002450	0	0
TXNDC6	347736	broad.mit.edu	37	3	138025309	138025309	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:138025309C>T	uc003esg.2	-	7	502	c.474G>A	c.(472-474)AGG>AGA	p.R158R	TXNDC6_uc003esd.1_RNA|TXNDC6_uc010huf.1_Silent_p.R73R|TXNDC6_uc003ese.1_Silent_p.R97R	NM_178130	NP_835231	Q86XW9	TXND6_HUMAN	thioredoxin domain containing 6	158	NDK.				cell redox homeostasis|CTP biosynthetic process|GTP biosynthetic process|UTP biosynthetic process	cytoplasm|cytoskeleton	ATP binding|nucleoside diphosphate kinase activity			breast(3)|ovary(1)|pancreas(1)	5						AGGTACAGGTCCTCTCTGATG	0.453													19	222					0	0	0.003330	0	0
PRR23B	389151	broad.mit.edu	37	3	138739116	138739116	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:138739116C>T	uc003esy.1	-	1	653	c.388G>A	c.(388-390)GCT>ACT	p.A130T		NM_001013650	NP_001013672	Q6ZRT6	PR23B_HUMAN	proline rich 23B	130										breast(1)	1						TCCCTGACAGCGCCCAGGAAA	0.642													13	32					0	0	0.001855	0	0
RBP1	5947	broad.mit.edu	37	3	139257667	139257667	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:139257667C>T	uc003eti.2	-	2	505	c.394G>A	c.(394-396)GAG>AAG	p.E132K	RBP1_uc011bmx.1_Missense_Mutation_p.E132K|RBP1_uc010huj.2_RNA|RBP1_uc011bmy.1_Missense_Mutation_p.E132K	NM_002899	NP_002890	P09455	RET1_HUMAN	retinol binding protein 1, cellular isoform a	70						cytoplasm	retinal binding|retinol binding|transporter activity				0					Vitamin A(DB00162)	TCCTCAAACTCCTTCCCAACC	0.557													29	58					0	0	0.006320	0	0
NMNAT3	349565	broad.mit.edu	37	3	139297758	139297758	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:139297758C>T	uc003etj.2	-	2	289	c.249G>A	c.(247-249)TGG>TGA	p.W83*	NMNAT3_uc003etk.2_Nonsense_Mutation_p.W46*|NMNAT3_uc003etl.2_RNA|NMNAT3_uc010hul.2_Intron	NM_178177	NP_835471	Q96T66	NMNA3_HUMAN	nicotinamide mononucleotide adenylyltransferase	83					water-soluble vitamin metabolic process	cytosol|mitochondrion	ATP binding|nicotinamide-nucleotide adenylyltransferase activity|nicotinate-nucleotide adenylyltransferase activity				0						GCTCACTCTCCCAAGGGTCCA	0.592													17	22					0	0	0.006122	0	0
CLSTN2	64084	broad.mit.edu	37	3	139894845	139894845	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:139894845G>A	uc003etn.2	+	2	352	c.162G>A	c.(160-162)GAG>GAA	p.E54E	CLSTN2_uc003etm.2_Silent_p.E54E	NM_022131	NP_071414	Q9H4D0	CSTN2_HUMAN	calsyntenin 2 precursor	54	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|plasma membrane	calcium ion binding			skin(3)|large_intestine(2)|pancreas(1)|central_nervous_system(1)	7						TCATAACTGAGAACAATGACA	0.423										HNSCC(16;0.037)			21	30					0	0	0.002780	0	0
CLSTN2	64084	broad.mit.edu	37	3	140122557	140122557	+	Missense_Mutation	SNP	C	T	T	rs150165907		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:140122557C>T	uc003etn.2	+	3	509	c.319C>T	c.(319-321)CGT>TGT	p.R107C	CLSTN2_uc003etm.2_Missense_Mutation_p.R107C	NM_022131	NP_071414	Q9H4D0	CSTN2_HUMAN	calsyntenin 2 precursor	107	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|plasma membrane	calcium ion binding			skin(3)|large_intestine(2)|pancreas(1)|central_nervous_system(1)	7						GGGCCGGCTCCGTGCCAAGAG	0.562										HNSCC(16;0.037)			42	86					0	0	0.008740	0	0
PLS1	5357	broad.mit.edu	37	3	142403152	142403152	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:142403152C>T	uc010huv.2	+	8	962	c.803C>T	c.(802-804)CCC>CTC	p.P268L	PLS1_uc003euz.2_Missense_Mutation_p.P268L|PLS1_uc003eva.2_Missense_Mutation_p.P268L	NM_001145319	NP_001138791	Q14651	PLSI_HUMAN	plastin 1	268	Actin-binding 1.|CH 2.					cytoplasm	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(1)	1						AAGCTTTCTCCCGAGGAATTA	0.428													12	35					0	0	0.001855	0	0
PCOLCE2	26577	broad.mit.edu	37	3	142557691	142557691	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:142557691C>T	uc003evd.2	-	5	827	c.631G>A	c.(631-633)GAT>AAT	p.D211N		NM_013363	NP_037495	Q9UKZ9	PCOC2_HUMAN	procollagen C-endopeptidase enhancer 2	211	CUB 2.					extracellular region	collagen binding|heparin binding|peptidase activator activity			ovary(2)|skin(1)	3						GCCACATAATCATATCGGCAG	0.373													10	37					0	0	0.003163	0	0
PLOD2	5352	broad.mit.edu	37	3	145796908	145796908	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:145796908C>T	uc003evs.1	-	13	2001	c.1495G>A	c.(1495-1497)GAA>AAA	p.E499K	PLOD2_uc003evq.1_Missense_Mutation_p.E159K|PLOD2_uc011bnm.1_Missense_Mutation_p.E444K|PLOD2_uc003evr.1_Missense_Mutation_p.E499K	NM_000935	NP_000926	O00469	PLOD2_HUMAN	procollagen-lysine, 2-oxoglutarate 5-dioxygenase	499					protein modification process|response to hypoxia	rough endoplasmic reticulum membrane	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-lysine 5-dioxygenase activity|protein binding			ovary(1)|skin(1)	2					Vitamin C(DB00126)	CTTACCATTTCTCTAGCATTT	0.398													24	91					0	0	0.008361	0	0
PLOD2	5352	broad.mit.edu	37	3	145828077	145828077	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:145828077G>A	uc003evs.1	-	4	1003	c.497C>T	c.(496-498)TCA>TTA	p.S166L	PLOD2_uc011bnm.1_Missense_Mutation_p.S111L|PLOD2_uc003evr.1_Missense_Mutation_p.S166L	NM_000935	NP_000926	O00469	PLOD2_HUMAN	procollagen-lysine, 2-oxoglutarate 5-dioxygenase	166					protein modification process|response to hypoxia	rough endoplasmic reticulum membrane	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-lysine 5-dioxygenase activity|protein binding			ovary(1)|skin(1)	2					Vitamin C(DB00126)	CTCACCTCCTGAATTCAGATA	0.358													13	44					0	0	0.003163	0	0
PLSCR5	389158	broad.mit.edu	37	3	146307599	146307599	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:146307599C>T	uc003ewb.2	-	6	1622	c.618G>A	c.(616-618)GTG>GTA	p.V206V	PLSCR5_uc010hvb.2_Silent_p.V194V|PLSCR5_uc010hvc.2_Silent_p.V206V	NM_001085420	NP_001078889	A0PG75	PLS5_HUMAN	phospholipid scramblase family, member 5	206											0						TAATGGTTTTCACCTTTAGAA	0.303													31	43					0	0	0.012213	0	0
AGTR1	185	broad.mit.edu	37	3	148459740	148459740	+	Silent	SNP	G	A	A	rs1064535		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:148459740G>A	uc003ewg.2	+	4	1364	c.918G>A	c.(916-918)GGG>GGA	p.G306G	AGTR1_uc003ewh.2_Silent_p.G306G|AGTR1_uc003ewi.2_Silent_p.G306G|AGTR1_uc003ewj.2_Silent_p.G306G|AGTR1_uc003ewk.2_Silent_p.G306G	NM_031850	NP_114038	P30556	AGTR1_HUMAN	angiotensin II receptor, type 1	306	Cytoplasmic (Potential).				calcium-mediated signaling|cell chemotaxis|elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger|kidney development|low-density lipoprotein particle remodeling|positive regulation of cellular protein metabolic process|positive regulation of cholesterol esterification|positive regulation of inflammatory response|positive regulation of NAD(P)H oxidase activity|positive regulation of phospholipase A2 activity|positive regulation of reactive oxygen species metabolic process|regulation of cell growth|regulation of cell proliferation|regulation of renal sodium excretion|regulation of vasoconstriction|renin-angiotensin regulation of aldosterone production|Rho protein signal transduction		acetyltransferase activator activity|angiotensin type I receptor activity|angiotensin type II receptor activity|bradykinin receptor binding|protein heterodimerization activity				0			LUSC - Lung squamous cell carcinoma(72;0.127)|Lung(72;0.152)		Candesartan(DB00796)|Eprosartan(DB00876)|Forasartan(DB01342)|Irbesartan(DB01029)|Losartan(DB00678)|Olmesartan(DB00275)|Saprisartan(DB01347)|Spironolactone(DB00421)|Tasosartan(DB01349)|Telmisartan(DB00966)|Valsartan(DB00177)	GCTTTCTGGGGAAAAAATTTA	0.368													24	16					0	0	0.014323	0	0
CPB1	1360	broad.mit.edu	37	3	148552288	148552288	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:148552288G>A	uc003ewl.2	+	3	174	c.151G>A	c.(151-153)GAC>AAC	p.D51N		NM_001871	NP_001862	P15086	CBPB1_HUMAN	pancreatic carboxypeptidase B1 preproprotein	51					proteolysis	extracellular region	metallocarboxypeptidase activity|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3			LUSC - Lung squamous cell carcinoma(72;0.0934)|Lung(72;0.115)			TATTCAGATTGACTTCTGGAA	0.363													10	17					0	0	0.010729	0	0
CPA3	1359	broad.mit.edu	37	3	148599312	148599312	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:148599312A>G	uc003ewm.2	+	7	632	c.580A>G	c.(580-582)ACC>GCC	p.T194A		NM_001870	NP_001861	P15088	CBPA3_HUMAN	carboxypeptidase A3 precursor	194					proteolysis	stored secretory granule|transport vesicle	metallocarboxypeptidase activity|zinc ion binding			breast(1)|skin(1)	2			LUSC - Lung squamous cell carcinoma(72;0.0934)|Lung(72;0.115)			CCGACAGGCAACCAAAACTTA	0.343													7	22					0	0	0.001984	0	0
HLTF	6596	broad.mit.edu	37	3	148756981	148756981	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:148756981G>A	uc003ewq.1	-	23	2869	c.2651C>T	c.(2650-2652)TCC>TTC	p.S884F	HLTF_uc003ewr.1_Missense_Mutation_p.S884F|HLTF_uc003ews.1_Missense_Mutation_p.S883F|HLTF_uc010hve.1_Missense_Mutation_p.S883F	NM_139048	NP_620636	Q14527	HLTF_HUMAN	helicase-like transcription factor	884	Helicase C-terminal.				chromatin modification|transcription, DNA-dependent	nucleus	ATP binding|DNA binding|helicase activity|ligase activity|zinc ion binding			ovary(1)	1			LUSC - Lung squamous cell carcinoma(72;0.0473)|Lung(72;0.0607)			TTGGGCCATGGAACCATCCAA	0.363													9	15					0	0	0.010729	0	0
COMMD2	51122	broad.mit.edu	37	3	149459388	149459388	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:149459388G>A	uc003exk.2	-	5	567	c.520C>T	c.(520-522)CAT>TAT	p.H174Y	COMMD2_uc003exj.1_5'Flank	NM_016094	NP_057178	Q86X83	COMD2_HUMAN	COMM domain containing 2	174	COMM.						protein binding				0			LUSC - Lung squamous cell carcinoma(72;0.0378)|Lung(72;0.048)			TGAACCAAATGGAGCAGGGTG	0.418													17	51					0	0	0.004007	0	0
FAM194A	131831	broad.mit.edu	37	3	150387157	150387157	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:150387157G>A	uc003eyg.2	-	12	1482	c.1425C>T	c.(1423-1425)CCC>CCT	p.P475P	FAM194A_uc003eyh.2_Silent_p.P329P	NM_152394	NP_689607	Q7L0X2	F194A_HUMAN	hypothetical protein LOC131831	475										skin(2)|ovary(1)	3						CAGGGTTAGTGGGCATATCTT	0.463													18	62					0	0	0.006122	0	0
FAM194A	131831	broad.mit.edu	37	3	150396255	150396255	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:150396255G>A	uc003eyg.2	-	10	1255	c.1198C>T	c.(1198-1200)CAA>TAA	p.Q400*	FAM194A_uc003eyh.2_Nonsense_Mutation_p.Q254*	NM_152394	NP_689607	Q7L0X2	F194A_HUMAN	hypothetical protein LOC131831	400										skin(2)|ovary(1)	3						TTTCTTAGTTGAAAATCAAAT	0.289													5	38					0	0	0.000602	0	0
MED12L	116931	broad.mit.edu	37	3	150876535	150876535	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:150876535C>T	uc003eyp.2	+	6	824	c.786C>T	c.(784-786)ATC>ATT	p.I262I	MED12L_uc011bnz.1_Silent_p.I262I|MED12L_uc003eym.1_Silent_p.I262I|MED12L_uc003eyn.2_Silent_p.I262I|MED12L_uc003eyo.2_Silent_p.I262I	NM_053002	NP_443728	Q86YW9	MD12L_HUMAN	mediator of RNA polymerase II transcription,	262					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	mediator complex				ovary(4)|large_intestine(1)|central_nervous_system(1)|skin(1)	7			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			TAGAAAAGATCAGACCAATGG	0.343													6	22					0	0	0.004482	0	0
GPR171	29909	broad.mit.edu	37	3	150917163	150917163	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:150917163C>T	uc003eyq.3	-	3	251	c.11G>A	c.(10-12)AGT>AAT	p.S4N	MED12L_uc011bnz.1_Intron|MED12L_uc003eyp.2_Intron	NM_013308	NP_037440	O14626	GP171_HUMAN	G protein-coupled receptor 171	4	Extracellular (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled				0			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			GAAGAACGAACTGTTTGTCAT	0.338													14	32					0	0	0.003163	0	0
P2RY12	64805	broad.mit.edu	37	3	151056296	151056296	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:151056296G>A	uc003eyw.1	-	2	554	c.338C>T	c.(337-339)TCA>TTA	p.S113L	MED12L_uc011bnz.1_Intron|MED12L_uc003eyp.2_Intron|P2RY12_uc011boa.1_Intron|P2RY12_uc003eyx.1_Missense_Mutation_p.S113L	NM_176876	NP_795345	Q9H244	P2Y12_HUMAN	purinergic receptor P2Y12	113	Helical; Name=3; (Potential).				platelet activation	integral to membrane|plasma membrane	guanyl-nucleotide exchange factor activity			skin(1)	1			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)		Clopidogrel(DB00758)|Epoprostenol(DB01240)|Ticlopidine(DB00208)|Treprostinil(DB00374)	TCCCAGGAATGAAATACTGAT	0.403													15	62					0	0	0.003163	0	0
MED12L	116931	broad.mit.edu	37	3	151073805	151073805	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:151073805G>A	uc003eyp.2	+	17	2572	c.2534G>A	c.(2533-2535)GGA>GAA	p.G845E	MED12L_uc011bnz.1_Missense_Mutation_p.G705E|P2RY12_uc011boa.1_Intron|P2RY12_uc003eyx.1_Intron|MED12L_uc003eyy.1_Missense_Mutation_p.G9E	NM_053002	NP_443728	Q86YW9	MD12L_HUMAN	mediator of RNA polymerase II transcription,	845					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	mediator complex				ovary(4)|large_intestine(1)|central_nervous_system(1)|skin(1)	7			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			AACATCAACGGACTAATTGAC	0.428													12	27					0	0	0.013537	0	0
MED12L	116931	broad.mit.edu	37	3	151127083	151127083	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:151127083C>T	uc003eyp.2	+	38	5806	c.5768C>T	c.(5767-5769)CCT>CTT	p.P1923L	MED12L_uc011bnz.1_Intron	NM_053002	NP_443728	Q86YW9	MD12L_HUMAN	mediator of RNA polymerase II transcription,	1923	Gln-rich.				regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	mediator complex				ovary(4)|large_intestine(1)|central_nervous_system(1)|skin(1)	7			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			CGGCCCTCCCCTCAGCTCCCT	0.532													22	69					0	0	0.003330	0	0
IGSF10	285313	broad.mit.edu	37	3	151164712	151164712	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:151164712C>T	uc011bod.1	-	4	3057	c.3057G>A	c.(3055-3057)AGG>AGA	p.R1019R		NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	immunoglobulin superfamily, member 10 precursor	1019					cell differentiation|multicellular organismal development|ossification	extracellular region				skin(7)|ovary(5)|central_nervous_system(1)	13			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			TAATCCGCCCCCTTCCGCCAA	0.478													7	55					0	0	0.001984	0	0
IGSF10	285313	broad.mit.edu	37	3	151166168	151166168	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:151166168C>T	uc011bod.1	-	4	1601	c.1601G>A	c.(1600-1602)GGA>GAA	p.G534E		NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	immunoglobulin superfamily, member 10 precursor	534	Ig-like C2-type 1.				cell differentiation|multicellular organismal development|ossification	extracellular region				skin(7)|ovary(5)|central_nervous_system(1)	13			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			TTCCAATTTTCCACTTTTGTC	0.443													26	128					0	0	0.010818	0	0
IGSF10	285313	broad.mit.edu	37	3	151176435	151176435	+	Silent	SNP	G	A	A	rs141824930		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:151176435G>A	uc011bod.1	-	1	63	c.63C>T	c.(61-63)GTC>GTT	p.V21V		NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	immunoglobulin superfamily, member 10 precursor	21					cell differentiation|multicellular organismal development|ossification	extracellular region				skin(7)|ovary(5)|central_nervous_system(1)	13			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			CAGGGGTGGCGACCAGGCAGA	0.527													13	37					0	0	0.004007	0	0
AADACL2	344752	broad.mit.edu	37	3	151474789	151474789	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:151474789G>A	uc003ezc.2	+	5	733	c.613G>A	c.(613-615)GAT>AAT	p.D205N	AADACL2_uc010hvn.2_5'UTR	NM_207365	NP_997248	Q6P093	ADCL2_HUMAN	arylacetamide deacetylase-like 2 precursor	205						extracellular region|integral to membrane	carboxylesterase activity				0			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0813)			GGTGCAGAATGATGCTGAAAT	0.318													10	40					0	0	0.010729	0	0
AADACL2	344752	broad.mit.edu	37	3	151475146	151475146	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:151475146G>A	uc003ezc.2	+	5	1090	c.970G>A	c.(970-972)GAT>AAT	p.D324N	AADACL2_uc010hvn.2_Missense_Mutation_p.D111N	NM_207365	NP_997248	Q6P093	ADCL2_HUMAN	arylacetamide deacetylase-like 2 precursor	324						extracellular region|integral to membrane	carboxylesterase activity				0			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0813)			GTTGGCCAATGATTCTCAGTT	0.363													21	69					0	0	0.003954	0	0
P2RY1	5028	broad.mit.edu	37	3	152553639	152553639	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:152553639C>T	uc003ezq.2	+	1	904	c.68C>T	c.(67-69)TCG>TTG	p.S23L		NM_002563	NP_002554	P47900	P2RY1_HUMAN	purinergic receptor P2Y1	23	Extracellular (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|platelet activation	integral to plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			lung(1)	1			LUSC - Lung squamous cell carcinoma(72;0.0628)|Lung(72;0.11)			GGTCCGGGTTCGTCCTGGGGG	0.657													11	35					0	0	0.008291	0	0
GPR149	344758	broad.mit.edu	37	3	154138961	154138961	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:154138961C>T	uc003faa.2	-	3	1590	c.1490G>A	c.(1489-1491)GGA>GAA	p.G497E		NM_001038705	NP_001033794	Q86SP6	GP149_HUMAN	G protein-coupled receptor 149	497	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(6)	6			LUSC - Lung squamous cell carcinoma(72;0.114)|Lung(72;0.173)			AATATCACCTCCTGTTTTGTC	0.403													27	109					0	0	0.006320	0	0
MME	4311	broad.mit.edu	37	3	154856008	154856008	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:154856008G>A	uc010hvr.1	+	9	1049	c.838G>A	c.(838-840)GAA>AAA	p.E280K	MME_uc003fab.1_Missense_Mutation_p.E280K|MME_uc003fac.1_Missense_Mutation_p.E280K|MME_uc003fad.1_Missense_Mutation_p.E280K|MME_uc003fae.1_Missense_Mutation_p.E280K	NM_007289	NP_009220	P08473	NEP_HUMAN	membrane metallo-endopeptidase	280	Extracellular (Potential).				cell-cell signaling|proteolysis	integral to plasma membrane	metal ion binding|metalloendopeptidase activity|protein binding			ovary(2)|central_nervous_system(1)	3		all_neural(597;0.00391)|Myeloproliferative disorder(1037;0.0122)	LUSC - Lung squamous cell carcinoma(72;0.114)|Lung(72;0.135)		Candoxatril(DB00616)	TATGGAATTGGAAAAAGAAAT	0.338													21	49					0	0	0.002780	0	0
PLCH1	23007	broad.mit.edu	37	3	155199371	155199371	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:155199371A>G	uc011bok.1	-	23	4745	c.4468T>C	c.(4468-4470)TGC>CGC	p.C1490R	PLCH1_uc011boj.1_3'UTR|PLCH1_uc011bol.1_Missense_Mutation_p.C1452R	NM_001130960	NP_001124432	Q4KWH8	PLCH1_HUMAN	phospholipase C eta 1 isoform a	1490					lipid catabolic process|phosphatidylinositol-mediated signaling	membrane	calcium ion binding|calcium-dependent phospholipase C activity|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(3)|ovary(1)	4			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			TTGGATTTGCAAGGACTAGGC	0.463													21	29					0	0	0.008871	0	0
PLCH1	23007	broad.mit.edu	37	3	155200306	155200306	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:155200306G>A	uc011bok.1	-	23	3810	c.3533C>T	c.(3532-3534)TCC>TTC	p.S1178F	PLCH1_uc011boj.1_3'UTR|PLCH1_uc011bol.1_Missense_Mutation_p.S1140F	NM_001130960	NP_001124432	Q4KWH8	PLCH1_HUMAN	phospholipase C eta 1 isoform a	1178					lipid catabolic process|phosphatidylinositol-mediated signaling	membrane	calcium ion binding|calcium-dependent phospholipase C activity|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(3)|ovary(1)	4			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			AATAAGATGGGAAATTACACT	0.463													11	31					0	0	0.013537	0	0
PLCH1	23007	broad.mit.edu	37	3	155200514	155200514	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:155200514C>T	uc011bok.1	-	23	3602	c.3325G>A	c.(3325-3327)GAA>AAA	p.E1109K	PLCH1_uc011boj.1_3'UTR|PLCH1_uc011bol.1_Missense_Mutation_p.E1071K	NM_001130960	NP_001124432	Q4KWH8	PLCH1_HUMAN	phospholipase C eta 1 isoform a	1109					lipid catabolic process|phosphatidylinositol-mediated signaling	membrane	calcium ion binding|calcium-dependent phospholipase C activity|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(3)|ovary(1)	4			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			TTACCCTTTTCCTTGATTTTC	0.468													21	85					0	0	0.012319	0	0
PLCH1	23007	broad.mit.edu	37	3	155200581	155200581	+	Silent	SNP	T	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:155200581T>C	uc011bok.1	-	23	3535	c.3258A>G	c.(3256-3258)CCA>CCG	p.P1086P	PLCH1_uc011boj.1_3'UTR|PLCH1_uc011bol.1_Silent_p.P1048P	NM_001130960	NP_001124432	Q4KWH8	PLCH1_HUMAN	phospholipase C eta 1 isoform a	1086					lipid catabolic process|phosphatidylinositol-mediated signaling	membrane	calcium ion binding|calcium-dependent phospholipase C activity|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(3)|ovary(1)	4			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			AATGCTGCTTTGGGGAGAGAG	0.507													59	106					0	0	0.014410	0	0
PLCH1	23007	broad.mit.edu	37	3	155282900	155282900	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:155282900C>T	uc011bok.1	-	7	1114	c.837G>A	c.(835-837)ACG>ACA	p.T279T	PLCH1_uc011boj.1_Silent_p.T279T|PLCH1_uc011bol.1_Silent_p.T261T	NM_001130960	NP_001124432	Q4KWH8	PLCH1_HUMAN	phospholipase C eta 1 isoform a	279					lipid catabolic process|phosphatidylinositol-mediated signaling	membrane	calcium ion binding|calcium-dependent phospholipase C activity|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(3)|ovary(1)	4			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			GCATGAAGTTCGTGAAGCCTT	0.423													9	23					0	0	0.004482	0	0
KCNAB1	7881	broad.mit.edu	37	3	155838490	155838490	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:155838490G>A	uc003far.2	+	1	154	c.90G>A	c.(88-90)GGG>GGA	p.G30G	KCNAB1_uc011bon.1_Silent_p.G30G	NM_172160	NP_751892	Q14722	KCAB1_HUMAN	potassium voltage-gated channel, shaker-related	30						cytoplasm|integral to membrane	oxidoreductase activity|potassium channel regulator activity|voltage-gated potassium channel activity	p.P30S(1)		ovary(3)|skin(1)	4			LUSC - Lung squamous cell carcinoma(72;0.0461)|Lung(72;0.0465)			CTGTAGCAGGGAAAGACAAAT	0.557													9	63					0	0	0.004482	0	0
RARRES1	5918	broad.mit.edu	37	3	158422676	158422676	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:158422676C>T	uc003fci.2	-	4	647	c.576G>A	c.(574-576)TGG>TGA	p.W192*	RARRES1_uc003fcj.2_Nonsense_Mutation_p.W192*	NM_206963	NP_996846	P49788	TIG1_HUMAN	retinoic acid receptor responder (tazarotene	192	Extracellular (Potential).				negative regulation of cell proliferation	integral to membrane					0			Lung(72;0.00309)|LUSC - Lung squamous cell carcinoma(72;0.0043)		Tretinoin(DB00755)	AAGCCAAATCCCAGATGAGTC	0.418													8	18					0	0	0.003080	0	0
SCHIP1	29970	broad.mit.edu	37	3	159604006	159604007	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:159604006_159604007GG>AA	uc003fcs.1	+	4	955_956	c.889_890GG>AA	c.(889-891)GGG>AAG	p.G297K	SCHIP1_uc003fcq.1_Missense_Mutation_p.G373K|SCHIP1_uc003fcr.1_Missense_Mutation_p.G286K|SCHIP1_uc003fct.1_Missense_Mutation_p.G284K|SCHIP1_uc010hvz.1_Missense_Mutation_p.G257K|SCHIP1_uc003fcu.1_Missense_Mutation_p.G54K|SCHIP1_uc003fcv.1_Missense_Mutation_p.G70K	NM_014575	NP_055390	Q9P0W5	SCHI1_HUMAN	schwannomin interacting protein 1	297						cytoplasm	identical protein binding|protein binding			ovary(1)|central_nervous_system(1)	2			LUSC - Lung squamous cell carcinoma(72;0.00523)|Lung(72;0.00534)			ACTGCAGAGTGGGATGAACTTG	0.446													33	26					0	0	0.004672	0	0
SMC4	10051	broad.mit.edu	37	3	160119868	160119868	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:160119868G>A	uc003fdh.2	+	3	418	c.305G>A	c.(304-306)GGA>GAA	p.G102E	IFT80_uc003fda.2_Intron|IFT80_uc011boy.1_5'Flank|IFT80_uc003fdd.1_5'Flank|IFT80_uc003fde.1_5'Flank|SMC4_uc003fdf.1_RNA|SMC4_uc003fdg.1_Missense_Mutation_p.G102E|SMC4_uc010hwc.1_Intron|SMC4_uc003fdi.2_Missense_Mutation_p.G77E|SMC4_uc003fdj.2_Missense_Mutation_p.G102E|SMC4_uc010hwd.2_Missense_Mutation_p.G102E|uc011boz.1_5'Flank|MIR15B_hsa-mir-15b|MI0000438_5'Flank|uc003fdk.2_5'Flank|MIR16-2_hsa-mir-16-2|MI0000115_5'Flank	NM_001002800	NP_001002800	Q9NTJ3	SMC4_HUMAN	SMC4 structural maintenance of chromosomes	102					cell division|mitotic chromosome condensation	condensin complex|cytoplasm|nucleus	ATP binding|protein heterodimerization activity			ovary(1)|breast(1)	2			Lung(72;0.00334)|LUSC - Lung squamous cell carcinoma(72;0.00523)			AAAATTCTGGGACCTTTCCAT	0.353													6	30					0	0	0.001168	0	0
OTOL1	131149	broad.mit.edu	37	3	161214915	161214915	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:161214915C>T	uc011bpb.1	+	1	320	c.320C>T	c.(319-321)CCT>CTT	p.P107L		NM_001080440	NP_001073909	A6NHN0	OTOL1_HUMAN	otolin-1 precursor	107						collagen					0						TGTTGTTCACCTGTACCCGGG	0.438													26	78					0	0	0.004656	0	0
OTOL1	131149	broad.mit.edu	37	3	161220114	161220114	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:161220114G>A	uc011bpb.1	+	3	474	c.474G>A	c.(472-474)GGG>GGA	p.G158G		NM_001080440	NP_001073909	A6NHN0	OTOL1_HUMAN	otolin-1 precursor	158	Collagen-like 1.					collagen					0						GAGAACGTGGGGACCAAGGAG	0.413													6	14					0	0	0.001168	0	0
OTOL1	131149	broad.mit.edu	37	3	161221501	161221501	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:161221501G>A	uc011bpb.1	+	4	1205	c.1205G>A	c.(1204-1206)CGA>CAA	p.R402Q		NM_001080440	NP_001073909	A6NHN0	OTOL1_HUMAN	otolin-1 precursor	402	C1q.					collagen					0						CGACCTGCTCGAATCAGTCTG	0.468													8	9					0	0	0.003080	0	0
OTOL1	131149	broad.mit.edu	37	3	161221691	161221691	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:161221691C>T	uc011bpb.1	+	4	1395	c.1395C>T	c.(1393-1395)TTC>TTT	p.F465F		NM_001080440	NP_001073909	A6NHN0	OTOL1_HUMAN	otolin-1 precursor	465	C1q.					collagen					0						TTACTGGGTTCCTTTTGTACC	0.408													9	23					0	0	0.008291	0	0
SI	6476	broad.mit.edu	37	3	164712147	164712147	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:164712147C>T	uc003fei.2	-	41	4801	c.4739G>A	c.(4738-4740)AGG>AAG	p.R1580K		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	1580	Sucrase.|Lumenal.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	TAGAATATTCCTTGACATTTC	0.353										HNSCC(35;0.089)			23	50					0	0	0.004656	0	0
SI	6476	broad.mit.edu	37	3	164716441	164716441	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:164716441C>T	uc003fei.2	-	38	4489	c.4427G>A	c.(4426-4428)GGA>GAA	p.G1476E		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	1476	Sucrase.|Lumenal.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	CCCTCTTTTTCCAGTTGTCTT	0.388										HNSCC(35;0.089)			5	27					0	0	0.001984	0	0
SI	6476	broad.mit.edu	37	3	164739156	164739156	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:164739156T>C	uc003fei.2	-	27	3177	c.3115A>G	c.(3115-3117)AAG>GAG	p.K1039E		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	1039	Sucrase.|Lumenal.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	TATCTCTTCTTTTGGGGATCA	0.328										HNSCC(35;0.089)			44	78					0	0	0.014410	0	0
SLITRK3	22865	broad.mit.edu	37	3	164907932	164907932	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:164907932C>T	uc003fej.3	-	2	1131	c.687G>A	c.(685-687)CTG>CTA	p.L229L	SLITRK3_uc003fek.2_Silent_p.L229L	NM_014926	NP_055741	O94933	SLIK3_HUMAN	slit and trk like 3 protein precursor	229	Extracellular (Potential).					integral to membrane				ovary(6)|skin(3)|pancreas(1)	10						GGTTTTCTTCCAGCTGGAGCT	0.448										HNSCC(40;0.11)			22	30					0	0	0.003954	0	0
BCHE	590	broad.mit.edu	37	3	165547537	165547537	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:165547537G>A	uc003fem.3	-	2	1445	c.1285C>T	c.(1285-1287)CCT>TCT	p.P429S	BCHE_uc003fen.3_Intron	NM_000055	NP_000046	P06276	CHLE_HUMAN	butyrylcholinesterase precursor	429					choline metabolic process|cocaine metabolic process|synaptic transmission, cholinergic	endoplasmic reticulum lumen|extracellular space|membrane	acetylcholinesterase activity|beta-amyloid binding|carboxylesterase activity|cholinesterase activity|enzyme binding			ovary(3)|pancreas(1)	4					Ambenonium(DB01122)|Atropine(DB00572)|Bambuterol(DB01408)|Chlorpromazine(DB00477)|Choline(DB00122)|Cinnarizine(DB00568)|Demecarium bromide(DB00944)|Dibucaine(DB00527)|Donepezil(DB00843)|Echothiophate Iodide(DB01057)|Edrophonium(DB01010)|Ethopropazine(DB00392)|Etomidate(DB00292)|Galantamine(DB00674)|Hexafluronium bromide(DB00941)|Isoflurophate(DB00677)|Mefloquine(DB00358)|Mivacurium(DB01226)|Neostigmine(DB01400)|Pancuronium(DB01337)|Pralidoxime(DB00733)|Procainamide(DB01035)|Pyridostigmine(DB00545)|Rivastigmine(DB00989)|Succinylcholine(DB00202)|Terbutaline(DB00871)|Trimethaphan(DB01116)	TCCAAGGCAGGGCATATGAAA	0.433													31	41					0	0	0.007291	0	0
ZBBX	79740	broad.mit.edu	37	3	167033541	167033541	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:167033541C>T	uc003fep.2	-	15	1594	c.1271G>A	c.(1270-1272)CGA>CAA	p.R424Q	ZBBX_uc011bpc.1_Missense_Mutation_p.R424Q|ZBBX_uc003feq.2_Missense_Mutation_p.R395Q	NM_024687	NP_078963	A8MT70	ZBBX_HUMAN	zinc finger, B-box domain containing	424						intracellular	zinc ion binding			ovary(2)	2						GTTTTACCTTCGTTGACTGTC	0.318													6	18					0	0	0.003080	0	0
SERPINI2	5276	broad.mit.edu	37	3	167159914	167159914	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:167159914C>T	uc003fer.1	-	8	1259	c.1201G>A	c.(1201-1203)GAT>AAT	p.D401N	SERPINI2_uc003fes.1_Missense_Mutation_p.D411N|SERPINI2_uc003fet.1_Missense_Mutation_p.D401N	NM_006217	NP_006208	O75830	SPI2_HUMAN	serpin peptidase inhibitor, clade I (pancpin),	401					cellular component movement|regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			skin(2)|urinary_tract(1)	3						GAATCTAAATCTCTTCCTTTT	0.323													7	14					0	0	0.004482	0	0
SERPINI2	5276	broad.mit.edu	37	3	167183119	167183119	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:167183119G>A	uc003fer.1	-	4	799	c.741C>T	c.(739-741)AGC>AGT	p.S247S	SERPINI2_uc003fes.1_Silent_p.S257S|SERPINI2_uc003fet.1_Silent_p.S247S	NM_006217	NP_006208	O75830	SPI2_HUMAN	serpin peptidase inhibitor, clade I (pancpin),	247					cellular component movement|regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			skin(2)|urinary_tract(1)	3						TGATAATTAAGCTAAATTCAT	0.318													30	60					0	0	0.009535	0	0
WDR49	151790	broad.mit.edu	37	3	167240194	167240194	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:167240194C>T	uc003fev.1	-	12	1933	c.1627G>A	c.(1627-1629)GAA>AAA	p.E543K	WDR49_uc003feu.1_Missense_Mutation_p.E368K|WDR49_uc011bpd.1_Intron|WDR49_uc003few.1_Intron	NM_178824	NP_849146	Q8IV35	WDR49_HUMAN	WD repeat domain 49	543										large_intestine(1)|ovary(1)|skin(1)	3						AAAGAAATTTCCTTTTGAATC	0.318													17	33					0	0	0.004990	0	0
WDR49	151790	broad.mit.edu	37	3	167277998	167277998	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:167277998C>T	uc003fev.1	-	5	811	c.505G>A	c.(505-507)GGG>AGG	p.G169R	WDR49_uc003feu.1_5'UTR|WDR49_uc011bpd.1_Missense_Mutation_p.G222R|WDR49_uc003few.1_Intron	NM_178824	NP_849146	Q8IV35	WDR49_HUMAN	WD repeat domain 49	169	WD 3.									large_intestine(1)|ovary(1)|skin(1)	3						ACAGTAGACCCTGTATCAGAG	0.378													19	21					0	0	0.007413	0	0
MECOM	2122	broad.mit.edu	37	3	168833916	168833916	+	Missense_Mutation	SNP	G	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:168833916G>T	uc003ffi.3	-	7	1449	c.1180C>A	c.(1180-1182)CTT>ATT	p.L394I	MECOM_uc010hwk.1_Missense_Mutation_p.L417I|MECOM_uc003ffj.3_Missense_Mutation_p.L459I|MECOM_uc011bpi.1_Missense_Mutation_p.L395I|MECOM_uc003ffn.3_Missense_Mutation_p.L394I|MECOM_uc003ffk.2_Missense_Mutation_p.L394I|MECOM_uc003ffl.2_Missense_Mutation_p.L554I|MECOM_uc011bpj.1_Missense_Mutation_p.L582I|MECOM_uc011bpk.1_Missense_Mutation_p.L384I|MECOM_uc010hwn.2_Missense_Mutation_p.L582I	NM_005241	NP_005232	Q03112	EVI1_HUMAN	MDS1 and EVI1 complex locus isoform b	394					apoptosis|cell differentiation|hemopoietic stem cell proliferation|negative regulation of JNK cascade|negative regulation of programmed cell death|negative regulation of transcription, DNA-dependent|regulation of cell cycle	nuclear speck	DNA binding|protein binding|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(5)|skin(5)|upper_aerodigestive_tract(1)|central_nervous_system(1)|ovary(1)|pancreas(1)	14						ACATCATCAAGGTCACTACTC	0.473													11	82					2.27111e-07	2.43697e-07	0.013537	1	0
LRRC31	79782	broad.mit.edu	37	3	169557796	169557796	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:169557796G>A	uc003fgc.1	-	9	1710	c.1633C>T	c.(1633-1635)CAC>TAC	p.H545Y	LRRC31_uc010hwp.1_Missense_Mutation_p.H489Y	NM_024727	NP_079003	Q6UY01	LRC31_HUMAN	leucine rich repeat containing 31	545										ovary(2)|skin(1)	3	all_cancers(22;2.76e-22)|all_epithelial(15;4.73e-27)|all_lung(20;9.24e-17)|Lung NSC(18;3.85e-16)|Ovarian(172;0.000223)|Breast(254;0.197)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.00943)			TGGTCAAAGTGAATGCTTCTT	0.403													13	32					0	0	0.002450	0	0
SAMD7	344658	broad.mit.edu	37	3	169644770	169644770	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:169644770G>A	uc003fgd.2	+	6	987	c.720G>A	c.(718-720)ACG>ACA	p.T240T	SAMD7_uc003fge.2_Silent_p.T240T|SAMD7_uc011bpo.1_Silent_p.T141T	NM_182610	NP_872416	Q7Z3H4	SAMD7_HUMAN	sterile alpha motif domain containing 7	240										skin(1)	1	all_cancers(22;1.55e-22)|all_epithelial(15;2.41e-27)|all_lung(20;3.52e-17)|Lung NSC(18;1.44e-16)|Ovarian(172;0.000337)|Breast(254;0.169)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.0106)			CAAGTGAAACGAATGAAAAGC	0.493													10	47					0	0	0.008291	0	0
SEC62	7095	broad.mit.edu	37	3	169700524	169700524	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:169700524C>T	uc003fgg.2	+	4	312	c.281C>T	c.(280-282)GCC>GTC	p.A94V	SEC62_uc003fgh.2_Missense_Mutation_p.A94V	NM_003262	NP_003253	Q99442	SEC62_HUMAN	translocation protein 1	94	Cytoplasmic (Potential).				cotranslational protein targeting to membrane|transmembrane transport	aggresome|endoplasmic reticulum membrane|integral to membrane|intermediate filament cytoskeleton|rough endoplasmic reticulum	protein transporter activity|receptor activity			ovary(1)	1						TTTCACCGAGCCCTAAAAGTA	0.224													8	66					0	0	0.003080	0	0
PRKCI	5584	broad.mit.edu	37	3	169999030	169999030	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:169999030C>T	uc003fgs.2	+	10	1197	c.959C>T	c.(958-960)TCT>TTT	p.S320F		NM_002740	NP_002731	P41743	KPCI_HUMAN	protein kinase C, iota	320	Protein kinase.				anti-apoptosis|cellular membrane organization|cellular response to insulin stimulus|establishment or maintenance of epithelial cell apical/basal polarity|intracellular signal transduction|nerve growth factor receptor signaling pathway|positive regulation of establishment of protein localization in plasma membrane|positive regulation of glucose import|protein targeting to membrane|secretion|tight junction assembly|vesicle-mediated transport	cytosol|endosome|nucleus|polarisome	ATP binding|phospholipid binding|protein binding|protein kinase C activity|zinc ion binding			lung(2)|ovary(1)|breast(1)|skin(1)	5	all_cancers(22;6.45e-23)|all_epithelial(15;8.52e-28)|all_lung(20;6.31e-17)|Lung NSC(18;2.61e-16)|Ovarian(172;0.000337)|Breast(254;0.169)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.197)			GGGCTGCATTCTTGCTTTCAG	0.383													7	35					0	0	0.001984	0	0
SKIL	6498	broad.mit.edu	37	3	170108192	170108192	+	Silent	SNP	T	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:170108192T>C	uc003fgu.2	+	5	2323	c.1611T>C	c.(1609-1611)ACT>ACC	p.T537T	SKIL_uc011bps.1_Silent_p.T517T|SKIL_uc003fgv.2_Silent_p.T491T|SKIL_uc003fgw.2_Silent_p.T537T	NM_005414	NP_005405	P12757	SKIL_HUMAN	SKI-like isoform 1	537	Potential.				cell cycle arrest|negative regulation of cell differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of axonogenesis|protein heterotrimerization|protein homotrimerization|regulation of apoptosis|regulation of apoptosis|response to antibiotic|response to growth factor stimulus|skeletal muscle tissue development	cytoplasm|PML body	chromatin binding|nucleotide binding|protein complex binding|protein domain specific binding|SMAD binding|transcription corepressor activity|transcription repressor activity			ovary(2)|skin(1)	3	all_cancers(22;7.13e-23)|all_epithelial(15;9.95e-28)|all_lung(20;1.23e-16)|Lung NSC(18;5.15e-16)|Ovarian(172;0.000337)|Breast(254;0.137)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.197)			TAATGAGAACTTATTTAAAAC	0.343													23	20					0	0	0.003954	0	0
CLDN11	5010	broad.mit.edu	37	3	170140970	170140970	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:170140970C>T	uc003fgx.2	+	2	448	c.246C>T	c.(244-246)CGC>CGT	p.R82R	CLDN11_uc011bpt.1_Silent_p.R82R|CLDN11_uc003fgy.2_5'UTR	NM_005602	NP_005593	O75508	CLD11_HUMAN	claudin 11	82	Extracellular (Potential).				calcium-independent cell-cell adhesion	integral to membrane|tight junction	identical protein binding|structural molecule activity			central_nervous_system(1)	1	all_cancers(22;5.62e-23)|all_epithelial(15;7.54e-28)|all_lung(20;2.51e-17)|Lung NSC(18;1.02e-16)|Ovarian(172;0.000567)|Breast(254;0.137)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.197)			AGGCCTGCCGCGCCCTGATGA	0.597													30	113					0	0	0.004289	0	0
SLC2A2	6514	broad.mit.edu	37	3	170715855	170715855	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:170715855C>T	uc003fhe.1	-	11	1721	c.1412G>A	c.(1411-1413)GGA>GAA	p.G471E	SLC2A2_uc003fhf.1_Missense_Mutation_p.G298E|SLC2A2_uc011bpu.1_Missense_Mutation_p.G344E	NM_000340	NP_000331	P11168	GTR2_HUMAN	solute carrier family 2 (facilitated glucose	471	Helical; Name=12; (Potential).				carbohydrate metabolic process|cellular lipid metabolic process|endocrine pancreas development|energy reserve metabolic process|regulation of insulin secretion	integral to plasma membrane|membrane fraction	D-glucose transmembrane transporter activity			ovary(1)|central_nervous_system(1)	2	all_cancers(22;1.41e-19)|all_lung(20;1.59e-15)|Lung NSC(18;7.08e-15)|Ovarian(172;0.00197)|Breast(254;0.122)		LUSC - Lung squamous cell carcinoma(14;1.1e-14)|Lung(28;2.99e-14)			CAGGAGCACTCCAGCAAAGAG	0.413													5	26					0	0	0.000602	0	0
SLC2A2	6514	broad.mit.edu	37	3	170716153	170716153	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:170716153C>T	uc003fhe.1	-	10	1512	c.1203G>A	c.(1201-1203)ATG>ATA	p.M401I	SLC2A2_uc003fhf.1_Missense_Mutation_p.M228I|SLC2A2_uc011bpu.1_Missense_Mutation_p.M274I	NM_000340	NP_000331	P11168	GTR2_HUMAN	solute carrier family 2 (facilitated glucose	401	Helical; Name=10; (Potential).				carbohydrate metabolic process|cellular lipid metabolic process|endocrine pancreas development|energy reserve metabolic process|regulation of insulin secretion	integral to plasma membrane|membrane fraction	D-glucose transmembrane transporter activity			ovary(1)|central_nervous_system(1)	2	all_cancers(22;1.41e-19)|all_lung(20;1.59e-15)|Lung NSC(18;7.08e-15)|Ovarian(172;0.00197)|Breast(254;0.122)		LUSC - Lung squamous cell carcinoma(14;1.1e-14)|Lung(28;2.99e-14)			AGATGGCTATCATGCTCACAT	0.443													6	36					0	0	0.001168	0	0
TNIK	23043	broad.mit.edu	37	3	170906620	170906620	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:170906620C>T	uc003fhh.2	-	7	855	c.510G>A	c.(508-510)GTG>GTA	p.V170V	TNIK_uc003fhi.2_Silent_p.V170V|TNIK_uc003fhj.2_Silent_p.V170V|TNIK_uc003fhk.2_Silent_p.V170V|TNIK_uc003fhl.2_Silent_p.V170V|TNIK_uc003fhm.2_Silent_p.V170V|TNIK_uc003fhn.2_Silent_p.V170V|TNIK_uc003fho.2_Silent_p.V170V	NM_015028	NP_055843	Q9UKE5	TNIK_HUMAN	TRAF2 and NCK interacting kinase isoform 1	170	Protein kinase.				actin cytoskeleton reorganization|activation of JNKK activity|protein autophosphorylation|regulation of dendrite morphogenesis|Wnt receptor signaling pathway	cytoskeleton|nucleus|recycling endosome	ATP binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			ovary(4)|large_intestine(1)	5	all_cancers(22;2.55e-19)|all_lung(20;2.22e-14)|Ovarian(172;0.00197)|Breast(254;0.122)		LUSC - Lung squamous cell carcinoma(14;3.57e-14)|Lung(28;9.39e-14)			CTCCAAAGTCCACTATTTAAG	0.343													10	19					0	0	0.010729	0	0
FNDC3B	64778	broad.mit.edu	37	3	171965461	171965461	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:171965461C>T	uc003fhy.2	+	5	575	c.403C>T	c.(403-405)CAT>TAT	p.H135Y	FNDC3B_uc003fhz.3_Missense_Mutation_p.H135Y|FNDC3B_uc003fia.2_Missense_Mutation_p.H66Y	NM_022763	NP_073600	Q53EP0	FND3B_HUMAN	fibronectin type III domain containing 3B	135						endoplasmic reticulum|integral to membrane				ovary(2)|breast(1)	3	all_cancers(22;1.01e-18)|Ovarian(172;0.00167)|Breast(254;0.165)		LUSC - Lung squamous cell carcinoma(14;3.57e-14)|Lung(28;9.39e-14)	GBM - Glioblastoma multiforme(1;0.0494)		ACATTTTATTCATAACTCACA	0.507													25	89					0	0	0.003954	0	0
GHSR	2693	broad.mit.edu	37	3	172166133	172166133	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:172166133G>A	uc003fib.1	-	1	71	c.71C>T	c.(70-72)TCC>TTC	p.S24F	GHSR_uc011bpv.1_Missense_Mutation_p.S24F	NM_198407	NP_940799	Q92847	GHSR_HUMAN	growth hormone secretagogue receptor isoform 1a	24	Extracellular (Potential).				actin polymerization or depolymerization|adult feeding behavior|decidualization|growth hormone secretion|hormone-mediated signaling pathway|negative regulation of inflammatory response|negative regulation of interleukin-1 beta production|negative regulation of interleukin-6 biosynthetic process|negative regulation of tumor necrosis factor biosynthetic process|positive regulation of appetite|positive regulation of multicellular organism growth	cell surface|integral to membrane|membrane raft|neuron projection|plasma membrane	growth hormone secretagogue receptor activity|growth hormone-releasing hormone receptor activity			lung(3)|ovary(1)|central_nervous_system(1)	5	Ovarian(172;0.00143)|Breast(254;0.197)		Lung(28;3.93e-15)|LUSC - Lung squamous cell carcinoma(14;1.48e-14)|STAD - Stomach adenocarcinoma(35;0.235)			GTTGCCGGGGGAAGCATCCCA	0.687													5	19					0	0	0.000602	0	0
NCEH1	57552	broad.mit.edu	37	3	172351691	172351691	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:172351691G>A	uc011bpx.1	-	5	1059	c.921C>T	c.(919-921)ATC>ATT	p.I307I	NCEH1_uc003fig.2_Silent_p.I299I|NCEH1_uc011bpw.1_Silent_p.I134I|NCEH1_uc011bpy.1_Silent_p.I134I	NM_001146276	NP_001139748	Q6PIU2	NCEH1_HUMAN	arylacetamide deacetylase-like 1 isoform a	267	Lumenal (Potential).				lipid catabolic process	endoplasmic reticulum|integral to membrane|microsome	carboxylesterase activity				0						GATTGTTAACGATCATTGCCT	0.478													11	39					0	0	0.001855	0	0
SPATA16	83893	broad.mit.edu	37	3	172631501	172631501	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:172631501G>A	uc003fin.3	-	10	1695	c.1537C>T	c.(1537-1539)CTT>TTT	p.L513F		NM_031955	NP_114161	Q9BXB7	SPT16_HUMAN	spermatogenesis associated 16	513					cell differentiation|multicellular organismal development|spermatogenesis	Golgi apparatus	binding			ovary(2)|skin(1)	3	Ovarian(172;0.00319)|Breast(254;0.197)		LUSC - Lung squamous cell carcinoma(14;1.48e-14)|Lung(28;6.63e-14)			CTTCCTTCAAGGGTGTCCATA	0.358													10	41					0	0	0.013537	0	0
NAALADL2	254827	broad.mit.edu	37	3	175165038	175165038	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:175165038G>A	uc003fit.2	+	6	1199	c.1112G>A	c.(1111-1113)CGA>CAA	p.R371Q	NAALADL2_uc003fiu.1_Missense_Mutation_p.R364Q|NAALADL2_uc010hwy.1_Intron|NAALADL2_uc010hwz.1_5'UTR	NM_207015	NP_996898	Q58DX5	NADL2_HUMAN	N-acetylated alpha-linked acidic dipeptidase 2	371	Extracellular (Potential).				proteolysis	integral to membrane	peptidase activity	p.R371*(1)		pancreas(1)	1	Ovarian(172;0.0102)	all_cancers(1;0.0272)|all_epithelial(1;0.0553)	OV - Ovarian serous cystadenocarcinoma(80;9.26e-28)	Colorectal(1;1.66e-10)|COAD - Colon adenocarcinoma(1;2.1e-07)|STAD - Stomach adenocarcinoma(1;0.00261)|READ - Rectum adenocarcinoma(3;0.0284)		AGACAAAGCCGATCAAACCTC	0.378													6	9					0	0	0.001168	0	0
PEX5L	51555	broad.mit.edu	37	3	179597774	179597774	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:179597774C>T	uc003fki.1	-	5	578	c.448G>A	c.(448-450)GAT>AAT	p.D150N	PEX5L_uc011bqd.1_Missense_Mutation_p.D107N|PEX5L_uc011bqe.1_5'UTR|PEX5L_uc011bqf.1_Intron|PEX5L_uc003fkj.1_Missense_Mutation_p.D115N|PEX5L_uc010hxd.1_Missense_Mutation_p.D148N|PEX5L_uc011bqg.1_Missense_Mutation_p.D126N|PEX5L_uc011bqh.1_Missense_Mutation_p.D91N	NM_016559	NP_057643	Q8IYB4	PEX5R_HUMAN	peroxisomal biogenesis factor 5-like	150					protein import into peroxisome matrix|regulation of cAMP-mediated signaling	cytosol|peroxisomal membrane	peroxisome matrix targeting signal-1 binding			ovary(3)|large_intestine(1)	4	all_cancers(143;3.94e-14)|Ovarian(172;0.0338)|Breast(254;0.183)		OV - Ovarian serous cystadenocarcinoma(80;1.75e-26)|GBM - Glioblastoma multiforme(14;0.000518)			TGCTCAGCATCCGTGCTGATG	0.517													29	35					0	0	0.010818	0	0
CCDC39	339829	broad.mit.edu	37	3	180377491	180377491	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:180377491C>T	uc010hxe.2	-	5	698	c.583G>A	c.(583-585)GAA>AAA	p.E195K	CCDC39_uc003fkn.2_RNA	NM_181426	NP_852091	Q9UFE4	CCD39_HUMAN	coiled-coil domain containing 39	195	Potential.				axonemal dynein complex assembly|ciliary cell motility|cilium movement involved in determination of left/right asymmetry|flagellar cell motility	cilium axoneme|cytoplasm|cytoskeleton				ovary(4)	4	all_cancers(143;9.31e-15)|Ovarian(172;0.0212)		OV - Ovarian serous cystadenocarcinoma(80;5.62e-23)|GBM - Glioblastoma multiforme(14;0.000558)			TCTGTAAGTTCGTTGTCAAGT	0.308													19	52					0	0	0.012319	0	0
LAMP3	27074	broad.mit.edu	37	3	182858380	182858380	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:182858380C>T	uc003flh.3	-	4	1116	c.892G>A	c.(892-894)GAA>AAA	p.E298K		NM_014398	NP_055213	Q9UQV4	LAMP3_HUMAN	lysosomal-associated membrane protein 3	298	Lumenal (Potential).				cell proliferation	integral to membrane|lysosomal membrane				ovary(2)|central_nervous_system(1)	3	all_cancers(143;9.14e-14)|Ovarian(172;0.0355)		all cancers(12;2.91e-44)|Epithelial(37;5.52e-38)|LUSC - Lung squamous cell carcinoma(7;7.12e-25)|Lung(8;6.39e-23)|OV - Ovarian serous cystadenocarcinoma(80;4.16e-21)			TATGATTCTTCATCCTGTAAA	0.373													29	31					0	0	0.012213	0	0
YEATS2	55689	broad.mit.edu	37	3	183469889	183469889	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:183469889C>T	uc003fly.2	+	10	1193	c.998C>T	c.(997-999)TCT>TTT	p.S333F		NM_018023	NP_060493	Q9ULM3	YETS2_HUMAN	YEATS domain containing 2	333					histone H3 acetylation|negative regulation of transcription from RNA polymerase II promoter	Ada2/Gcn5/Ada3 transcription activator complex	TBP-class protein binding			ovary(3)|large_intestine(1)	4	all_cancers(143;6.55e-10)|Ovarian(172;0.0303)		all cancers(12;2.38e-42)|Epithelial(37;1.9e-36)|OV - Ovarian serous cystadenocarcinoma(80;6.48e-22)			CATCGCCATTCTCTCGGAGAA	0.493													40	78					0	0	0.013114	0	0
PSMD2	5708	broad.mit.edu	37	3	184019347	184019348	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:184019347_184019348CC>TT	uc003fnn.1	+	4	413_414	c.380_381CC>TT	c.(379-381)TCC>TTT	p.S127F	PSMD2_uc011brj.1_5'UTR|PSMD2_uc011brk.1_5'UTR	NM_002808	NP_002799	Q13200	PSMD2_HUMAN	proteasome 26S non-ATPase subunit 2	127					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|regulation of protein catabolic process|S phase of mitotic cell cycle|viral reproduction	proteasome regulatory particle	enzyme regulator activity|protein binding				0	all_cancers(143;1.54e-10)|Ovarian(172;0.0339)		Epithelial(37;1.53e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)		Bortezomib(DB00188)	GACATCATCTCCGTTTTGGCCA	0.485													32	57					0	0	0.004672	0	0
EIF4G1	1981	broad.mit.edu	37	3	184043640	184043640	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:184043640C>T	uc003fnp.2	+	21	3321	c.3123C>T	c.(3121-3123)AGC>AGT	p.S1041S	EIF4G1_uc003fnt.2_Silent_p.S752S|EIF4G1_uc003fnq.2_Silent_p.S954S|EIF4G1_uc003fnr.2_Silent_p.S877S|EIF4G1_uc010hxx.2_Silent_p.S1048S|EIF4G1_uc003fns.2_Silent_p.S1001S|EIF4G1_uc010hxy.2_Silent_p.S1048S|EIF4G1_uc003fnv.3_Silent_p.S1042S|EIF4G1_uc003fnu.3_Silent_p.S1041S|EIF4G1_uc003fnw.2_Silent_p.S1048S|EIF4G1_uc003fnx.2_Silent_p.S846S|EIF4G1_uc003fny.3_Silent_p.S845S|EIF4G1_uc003foa.2_5'Flank	NM_198241	NP_937884	Q04637	IF4G1_HUMAN	eukaryotic translation initiation factor 4	1041	eIF3/EIF4A-binding.				insulin receptor signaling pathway|interspecies interaction between organisms|nuclear-transcribed mRNA poly(A) tail shortening|regulation of translational initiation	cytosol|eukaryotic translation initiation factor 4F complex	protein binding|translation initiation factor activity			lung(2)|ovary(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	7	all_cancers(143;1.06e-10)|Ovarian(172;0.0339)		Epithelial(37;1.53e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			TTGTGTCAGGCCGTGGACTTC	0.552													36	137					0	0	0.013114	0	0
CLCN2	1181	broad.mit.edu	37	3	184075213	184075213	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:184075213A>G	uc003foi.2	-	8	959	c.835T>C	c.(835-837)TTC>CTC	p.F279L	CLCN2_uc003foh.2_5'Flank|CLCN2_uc010hya.1_Missense_Mutation_p.F279L|CLCN2_uc011brl.1_Missense_Mutation_p.F279L|CLCN2_uc011brm.1_Missense_Mutation_p.F235L|CLCN2_uc011brn.1_Missense_Mutation_p.F279L	NM_004366	NP_004357	P51788	CLCN2_HUMAN	chloride channel 2	279	Helical; (By similarity).					chloride channel complex	voltage-gated chloride channel activity				0	all_cancers(143;6.66e-11)|Ovarian(172;0.0339)		Epithelial(37;2.22e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)		Lubiprostone(DB01046)	GCAGCGAAGAAGCCCCGCCAG	0.632													21	75					0	0	0.002780	0	0
THPO	7066	broad.mit.edu	37	3	184090693	184090693	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:184090693C>T	uc003fol.1	-	6	885	c.670G>A	c.(670-672)GGA>AGA	p.G224R	THPO_uc003fom.1_Missense_Mutation_p.G220R|THPO_uc003fon.2_Missense_Mutation_p.G185E|THPO_uc011bro.1_Missense_Mutation_p.G181E|THPO_uc003fop.2_Missense_Mutation_p.G181E|THPO_uc011brp.1_Intron|THPO_uc011brq.1_Intron|THPO_uc003for.1_RNA|THPO_uc003fos.1_RNA	NM_000460	NP_000451	P40225	TPO_HUMAN	thrombopoietin precursor	224					cell proliferation|platelet activation	extracellular space	cytokine activity|growth factor activity|hormone activity			ovary(1)	1	all_cancers(143;6.33e-11)|Ovarian(172;0.0339)		Epithelial(37;4.96e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			GCTCTGAATCCCTGCTGCCAC	0.522													7	36					0	0	0.003080	0	0
CHRD	8646	broad.mit.edu	37	3	184106376	184106376	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:184106376G>A	uc003fov.2	+	21	2802	c.2556G>A	c.(2554-2556)GTG>GTA	p.V852V	CHRD_uc003fow.2_Silent_p.V482V|CHRD_uc003fox.2_Silent_p.V852V|CHRD_uc003foy.2_Silent_p.V482V|CHRD_uc010hyc.2_Silent_p.V442V|CHRD_uc011brr.1_Silent_p.V394V	NM_003741	NP_003732	Q9H2X0	CHRD_HUMAN	chordin precursor	852					BMP signaling pathway involved in spinal cord dorsal/ventral patterning|floor plate development|negative regulation of BMP signaling pathway|negative regulation of cell migration|positive regulation of cell adhesion|skeletal system development	extracellular space	cytokine binding			skin(2)|ovary(1)	3	all_cancers(143;6.33e-11)|Ovarian(172;0.0339)		Epithelial(37;4.96e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			TCTCAACAGTGGGGTCGGGGG	0.587													32	97					0	0	0.009718	0	0
EPHB3	2049	broad.mit.edu	37	3	184289160	184289160	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:184289160C>T	uc003foz.2	+	2	610	c.173C>T	c.(172-174)CCA>CTA	p.P58L		NM_004443	NP_004434	P54753	EPHB3_HUMAN	ephrin receptor EphB3 precursor	58	Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(5)|breast(2)|upper_aerodigestive_tract(1)|stomach(1)|skin(1)|ovary(1)	11	all_cancers(143;1.89e-10)|Ovarian(172;0.0339)		Epithelial(37;1.27e-34)|OV - Ovarian serous cystadenocarcinoma(80;3.8e-22)			ACATCTCATCCAGAAAGTGGG	0.537													21	35					0	0	0.002780	0	0
HRG	3273	broad.mit.edu	37	3	186394836	186394836	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:186394836G>A	uc003fqq.2	+	7	765	c.742G>A	c.(742-744)GAA>AAA	p.E248K		NM_000412	NP_000403	P04196	HRG_HUMAN	histidine-rich glycoprotein precursor	248	Cystatin 2.				fibrinolysis|platelet activation|platelet degranulation	extracellular region|plasma membrane|platelet alpha granule lumen	cysteine-type endopeptidase inhibitor activity|heparin binding			ovary(1)|central_nervous_system(1)	2	all_cancers(143;6.64e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;5.73e-20)	GBM - Glioblastoma multiforme(93;0.0683)		CCTTTTCCAGGAACATGAGAA	0.398													28	68					0	0	0.006320	0	0
HRG	3273	broad.mit.edu	37	3	186395181	186395181	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:186395181G>A	uc003fqq.2	+	7	1110	c.1087G>A	c.(1087-1089)GGA>AGA	p.G363R		NM_000412	NP_000403	P04196	HRG_HUMAN	histidine-rich glycoprotein precursor	363	His/Pro-rich (HRR).				fibrinolysis|platelet activation|platelet degranulation	extracellular region|plasma membrane|platelet alpha granule lumen	cysteine-type endopeptidase inhibitor activity|heparin binding			ovary(1)|central_nervous_system(1)	2	all_cancers(143;6.64e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;5.73e-20)	GBM - Glioblastoma multiforme(93;0.0683)		gcatccccatggacaccatcc	0.124													10	12					0	0	0.006214	0	0
RTP2	344892	broad.mit.edu	37	3	187416406	187416406	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:187416406C>T	uc003fro.1	-	2	987	c.558G>A	c.(556-558)CCG>CCA	p.P186P		NM_001004312	NP_001004312	Q5QGT7	RTP2_HUMAN	receptor transporting protein 2	186	Cytoplasmic (Potential).				protein insertion into membrane	cell surface|integral to membrane|plasma membrane	olfactory receptor binding				0	all_cancers(143;4.06e-12)|Ovarian(172;0.0418)		OV - Ovarian serous cystadenocarcinoma(80;1.76e-18)	GBM - Glioblastoma multiforme(93;0.0515)		CCTGGGCCCTCGGCTTGGAGG	0.602													9	37					0	0	0.004482	0	0
BCL6	604	broad.mit.edu	37	3	187449586	187449586	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:187449586C>T	uc003frp.3	-	4	751	c.294G>A	c.(292-294)CGG>CGA	p.R98R	BCL6_uc011bsf.1_Silent_p.R98R|BCL6_uc010hza.2_5'UTR|BCL6_uc003frq.1_Silent_p.R98R	NM_001130845	NP_001124317	P41182	BCL6_HUMAN	B-cell lymphoma 6 protein isoform 1	98	BTB.				negative regulation of B cell apoptosis|negative regulation of cell growth|negative regulation of S phase of mitotic cell cycle|negative regulation of transcription from RNA polymerase II promoter|positive regulation of apoptosis|protein import into nucleus, translocation|regulation of germinal center formation|response to DNA damage stimulus	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|lung(2)|central_nervous_system(1)	5	all_cancers(143;9.45e-12)|Ovarian(172;0.0418)		OV - Ovarian serous cystadenocarcinoma(80;1.76e-18)	GBM - Glioblastoma multiforme(93;0.0141)		TGTTGCCCTCCCGCAAATTGA	0.493			T|Mis	IG loci|ZNFN1A1|LCP1|PIM1|TFRC|MHC2TA|NACA|HSPCB|HSPCA|HIST1H4I|IL21R| POU2AF1|ARHH|EIF4A2|SFRS3	NHL|CLL								6	39					0	0	0.003080	0	0
TP63	8626	broad.mit.edu	37	3	189587118	189587118	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:189587118C>T	uc003fry.2	+	9	1224	c.1135C>T	c.(1135-1137)CGT>TGT	p.R379C	TP63_uc003frx.2_Missense_Mutation_p.R379C|TP63_uc003frz.2_Missense_Mutation_p.R379C|TP63_uc010hzc.1_Missense_Mutation_p.R379C|TP63_uc003fsa.2_Missense_Mutation_p.R285C|TP63_uc003fsb.2_Missense_Mutation_p.R285C|TP63_uc003fsc.2_Missense_Mutation_p.R285C|TP63_uc003fsd.2_Missense_Mutation_p.R285C|TP63_uc010hzd.1_Missense_Mutation_p.R200C|TP63_uc003fse.1_Missense_Mutation_p.R256C	NM_003722	NP_003713	Q9H3D4	P63_HUMAN	tumor protein p63 isoform 1	379	Interaction with HIPK2.				anti-apoptosis|cellular response to UV|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of transcription from RNA polymerase II promoter|Notch signaling pathway|positive regulation of Notch signaling pathway|protein homotetramerization|regulation of neuron apoptosis|response to gamma radiation|response to X-ray	chromatin|cytosol|dendrite|Golgi apparatus|transcription factor complex	chromatin binding|damaged DNA binding|double-stranded DNA binding|identical protein binding|metal ion binding|p53 binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(5)|lung(4)|ovary(2)|upper_aerodigestive_tract(1)	12	all_cancers(143;3.35e-10)|Ovarian(172;0.0925)		Lung(62;3.33e-05)	GBM - Glioblastoma multiforme(93;0.0227)		ACCAGCGTTTCGTCAGAACAC	0.348									Hay-Wells_syndrome	HNSCC(45;0.13)			7	33					0	0	0.006214	0	0
LEPREL1	55214	broad.mit.edu	37	3	189691731	189691731	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:189691731C>T	uc011bsk.1	-	10	1903	c.1515G>A	c.(1513-1515)AAG>AAA	p.K505K	LEPREL1_uc003fsg.2_Silent_p.K324K	NM_018192	NP_060662	Q8IVL5	P3H2_HUMAN	leprecan-like 1 isoform a	505					collagen metabolic process|negative regulation of cell proliferation|peptidyl-proline hydroxylation	basement membrane|endoplasmic reticulum|Golgi apparatus	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 3-dioxygenase activity			breast(3)|ovary(1)	4	all_cancers(143;4.01e-10)|Ovarian(172;0.0925)		Lung(62;4.35e-05)	GBM - Glioblastoma multiforme(93;0.02)	L-Proline(DB00172)|Succinic acid(DB00139)|Vitamin C(DB00126)	CACCTTCAAACTTTTCATTGG	0.393													64	116					0	0	0.014410	0	0
LEPREL1	55214	broad.mit.edu	37	3	189700921	189700921	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:189700921G>A	uc011bsk.1	-	8	1626	c.1238C>T	c.(1237-1239)TCA>TTA	p.S413L	LEPREL1_uc003fsg.2_Missense_Mutation_p.S232L	NM_018192	NP_060662	Q8IVL5	P3H2_HUMAN	leprecan-like 1 isoform a	413					collagen metabolic process|negative regulation of cell proliferation|peptidyl-proline hydroxylation	basement membrane|endoplasmic reticulum|Golgi apparatus	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 3-dioxygenase activity			breast(3)|ovary(1)	4	all_cancers(143;4.01e-10)|Ovarian(172;0.0925)		Lung(62;4.35e-05)	GBM - Glioblastoma multiforme(93;0.02)	L-Proline(DB00172)|Succinic acid(DB00139)|Vitamin C(DB00126)	GTTCACTCCTGAAGGGACCCT	0.408													26	71					0	0	0.007291	0	0
LEPREL1	55214	broad.mit.edu	37	3	189711983	189711983	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:189711983G>A	uc011bsk.1	-	3	1111	c.723C>T	c.(721-723)TTC>TTT	p.F241F	LEPREL1_uc003fsg.2_Silent_p.F60F	NM_018192	NP_060662	Q8IVL5	P3H2_HUMAN	leprecan-like 1 isoform a	241	TPR 3.				collagen metabolic process|negative regulation of cell proliferation|peptidyl-proline hydroxylation	basement membrane|endoplasmic reticulum|Golgi apparatus	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 3-dioxygenase activity			breast(3)|ovary(1)	4	all_cancers(143;4.01e-10)|Ovarian(172;0.0925)		Lung(62;4.35e-05)	GBM - Glioblastoma multiforme(93;0.02)	L-Proline(DB00172)|Succinic acid(DB00139)|Vitamin C(DB00126)	TATCTTCAACGAAATATTCTC	0.413													6	32					0	0	0.001984	0	0
IL1RAP	3556	broad.mit.edu	37	3	190366453	190366453	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:190366453G>A	uc003fsm.1	+	12	1878	c.1672G>A	c.(1672-1674)GAT>AAT	p.D558N	IL1RAP_uc010hzg.1_Missense_Mutation_p.D558N|IL1RAP_uc003fsn.1_RNA|IL1RAP_uc003fso.1_Missense_Mutation_p.D558N|IL1RAP_uc003fsp.1_RNA|IL1RAP_uc003fsq.2_Intron	NM_002182	NP_002173	Q9NPH3	IL1AP_HUMAN	interleukin 1 receptor accessory protein isoform	558	Cytoplasmic (Potential).				inflammatory response|innate immune response|protein complex assembly	extracellular region|integral to plasma membrane				ovary(1)	1	all_cancers(143;3.61e-10)|Ovarian(172;0.0733)|Breast(254;0.21)		Lung(62;1.95e-06)|LUSC - Lung squamous cell carcinoma(58;2.05e-06)	GBM - Glioblastoma multiforme(93;0.00851)		GTCTAGCAGTGATGAGCAGGG	0.478													4	32					0	0	0.009096	0	0
OSTN	344901	broad.mit.edu	37	3	190967849	190967849	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:190967849G>A	uc011bsn.1	+	3	341	c.341G>A	c.(340-342)AGG>AAG	p.R114K		NM_198184	NP_937827	P61366	OSTN_HUMAN	osteocrin precursor	114					cell differentiation|multicellular organismal development|ossification		hormone activity			pancreas(1)|skin(1)	2	all_cancers(143;6.79e-09)|Ovarian(172;0.103)		LUSC - Lung squamous cell carcinoma(58;2.42e-06)|Lung(62;2.86e-06)	GBM - Glioblastoma multiforme(46;0.000254)		CATCCAAAAAGGCGATTTGGT	0.343													16	60					0	0	0.004990	0	0
C3orf59	151963	broad.mit.edu	37	3	192517368	192517368	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:192517368C>T	uc011bsp.1	-	2	604	c.283G>A	c.(283-285)GAA>AAA	p.E95K		NM_178496	NP_848591	Q8IYB1	M21D2_HUMAN	hypothetical protein LOC151963	95											0	all_cancers(143;1.56e-08)|Ovarian(172;0.0634)		OV - Ovarian serous cystadenocarcinoma(49;2.8e-18)|LUSC - Lung squamous cell carcinoma(58;8.04e-06)|Lung(62;8.62e-06)	GBM - Glioblastoma multiforme(46;3.86e-05)		ACCACGCCTTCCCGGACACCT	0.483													15	19					0	0	0.004990	0	0
ATP13A5	344905	broad.mit.edu	37	3	192994600	192994600	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:192994600G>A	uc011bsq.1	-	29	3335	c.3335C>T	c.(3334-3336)TCG>TTG	p.S1112L		NM_198505	NP_940907	Q4VNC0	AT135_HUMAN	ATPase type 13A5	1112					ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(5)|skin(4)|large_intestine(2)	11	all_cancers(143;1.08e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;5.56e-18)|LUSC - Lung squamous cell carcinoma(58;6.08e-06)|Lung(62;6.49e-06)	GBM - Glioblastoma multiforme(46;0.000307)		AACCCTCCACGATGTTATGGT	0.254													13	20					0	0	0.003163	0	0
ATP13A5	344905	broad.mit.edu	37	3	193002816	193002816	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:193002816G>A	uc011bsq.1	-	27	3113	c.3113C>T	c.(3112-3114)TCA>TTA	p.S1038L		NM_198505	NP_940907	Q4VNC0	AT135_HUMAN	ATPase type 13A5	1038					ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(5)|skin(4)|large_intestine(2)	11	all_cancers(143;1.08e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;5.56e-18)|LUSC - Lung squamous cell carcinoma(58;6.08e-06)|Lung(62;6.49e-06)	GBM - Glioblastoma multiforme(46;0.000307)		ACTTAAAATTGAACCAGGAAT	0.393													9	27					0	0	0.006214	0	0
ATP13A5	344905	broad.mit.edu	37	3	193025133	193025133	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:193025133C>T	uc011bsq.1	-	22	2551	c.2551G>A	c.(2551-2553)GGA>AGA	p.G851R		NM_198505	NP_940907	Q4VNC0	AT135_HUMAN	ATPase type 13A5	851					ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(5)|skin(4)|large_intestine(2)	11	all_cancers(143;1.08e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;5.56e-18)|LUSC - Lung squamous cell carcinoma(58;6.08e-06)|Lung(62;6.49e-06)	GBM - Glioblastoma multiforme(46;0.000307)		TCGTTAGCTCCATCTCCACAC	0.453													24	23					0	0	0.004656	0	0
ATP13A5	344905	broad.mit.edu	37	3	193036815	193036815	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:193036815C>T	uc011bsq.1	-	17	1998	c.1998G>A	c.(1996-1998)AAG>AAA	p.K666K		NM_198505	NP_940907	Q4VNC0	AT135_HUMAN	ATPase type 13A5	666					ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(5)|skin(4)|large_intestine(2)	11	all_cancers(143;1.08e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;5.56e-18)|LUSC - Lung squamous cell carcinoma(58;6.08e-06)|Lung(62;6.49e-06)	GBM - Glioblastoma multiforme(46;0.000307)		GATTCCCCATCTTTAAGGTTT	0.498													29	89					0	0	0.010818	0	0
ATP13A4	84239	broad.mit.edu	37	3	193132532	193132532	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:193132532C>T	uc003ftd.2	-	26	2958	c.2850G>A	c.(2848-2850)CTG>CTA	p.L950L	ATP13A4_uc010hzi.2_RNA	NM_032279	NP_115655	Q4VNC1	AT134_HUMAN	ATPase type 13A4	950	Helical; (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(2)	2	all_cancers(143;1.76e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;2.72e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;0.000109)		AGGCACCATTCAGATTCACTA	0.333													8	29					0	0	0.004482	0	0
ATP13A4	84239	broad.mit.edu	37	3	193201734	193201734	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:193201734C>T	uc003ftd.2	-	8	907	c.799G>A	c.(799-801)GGG>AGG	p.G267R	ATP13A4_uc003fte.1_Missense_Mutation_p.G267R|ATP13A4_uc011bsr.1_5'UTR	NM_032279	NP_115655	Q4VNC1	AT134_HUMAN	ATPase type 13A4	267	Extracellular (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(2)	2	all_cancers(143;1.76e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;2.72e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;0.000109)		CCTTTTCTCCCACATACAGAG	0.333													30	71					0	0	0.013726	0	0
ACAP2	23527	broad.mit.edu	37	3	195053810	195053811	+	Missense_Mutation	DNP	CT	TA	TA			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:195053810_195053811CT>TA	uc003fun.3	-	8	856_857	c.615_616AG>TA	c.(613-618)CAAGGA>CATAGA	p.205_206QG>HR		NM_012287	NP_036419	Q15057	ACAP2_HUMAN	centaurin, beta 2	205_206	BAR.				regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding			large_intestine(1)|ovary(1)	2						AGATCATATCCTTGATGAAAGA	0.332													13	56					0	0	0.004672	0	0
MUC4	4585	broad.mit.edu	37	3	195505259	195505259	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:195505259G>A	uc011bto.1	-	4	12934	c.12474C>T	c.(12472-12474)ACC>ACT	p.T4158T	MUC4_uc003fva.2_5'UTR|MUC4_uc003fvb.2_5'UTR|MUC4_uc003fvc.2_RNA|MUC4_uc003fvd.2_RNA|MUC4_uc003fve.2_5'UTR|MUC4_uc010hzr.2_RNA|MUC4_uc011btf.1_5'UTR|MUC4_uc011btg.1_RNA|MUC4_uc011bth.1_5'UTR|MUC4_uc011bti.1_5'UTR|MUC4_uc011btj.1_Silent_p.T27T|MUC4_uc011btk.1_5'UTR|MUC4_uc011btl.1_5'UTR|MUC4_uc011btm.1_Silent_p.T27T|MUC4_uc011btn.1_5'UTR|MUC4_uc003fvo.2_Silent_p.T50T|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Silent_p.T898T	NM_018406	NP_060876	Q99102	MUC4_HUMAN	mucin 4 isoform a	1043					cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity				0	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		TGGTCTGGGAGGTTGTGGGGG	0.592													18	37					0	0	0.007413	0	0
MUC4	4585	broad.mit.edu	37	3	195517235	195517235	+	Missense_Mutation	SNP	T	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:195517235T>G	uc011bto.1	-	2	1676	c.1216A>C	c.(1216-1218)AAC>CAC	p.N406H	MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Missense_Mutation_p.N288H	NM_018406	NP_060876	Q99102	MUC4_HUMAN	mucin 4 isoform a	411					cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity				0	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		TCCTCTGTGTTTCCAAGAGTA	0.453													42	61					0	0	0.006999	0	0
MUC4	4585	broad.mit.edu	37	3	195517442	195517442	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:195517442G>A	uc011bto.1	-	2	1469	c.1009C>T	c.(1009-1011)CAA>TAA	p.Q337*	MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Nonsense_Mutation_p.Q219*	NM_018406	NP_060876	Q99102	MUC4_HUMAN	mucin 4 isoform a	342					cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity				0	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		GTGTTGATTTGAGATACTCTG	0.458													63	116					0	0	0.014410	0	0
MUC4	4585	broad.mit.edu	37	3	195518055	195518055	+	Missense_Mutation	SNP	C	T	T	rs147332471	by1000genomes	TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:195518055C>T	uc011bto.1	-	2	856	c.396G>A	c.(394-396)ATG>ATA	p.M132I	MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Missense_Mutation_p.M14I	NM_018406	NP_060876	Q99102	MUC4_HUMAN	mucin 4 isoform a	137					cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity				0	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		TTGATGTCATCATGAGTGTGT	0.443													8	39					0	0	0.003080	0	0
TM4SF19	116211	broad.mit.edu	37	3	196054333	196054333	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:196054333G>A	uc003fwl.1	-	2	254	c.129C>T	c.(127-129)GTC>GTT	p.V43V	TM4SF19_uc003fwj.2_RNA|TM4SF19_uc010iad.1_Silent_p.V43V|TM4SF19_uc011btv.1_Silent_p.V43V	NM_138461	NP_612470	Q96DZ7	T4S19_HUMAN	transmembrane 4 L six family member 19	43	Extracellular (Potential).					integral to membrane					0	all_cancers(143;1.19e-08)|Ovarian(172;0.0634)|Breast(254;0.206)		Epithelial(36;3.94e-24)|all cancers(36;4.34e-22)|OV - Ovarian serous cystadenocarcinoma(49;8.53e-19)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00314)		ACAGGTAGGTGACATCCCAGT	0.617													17	65					0	0	0.006122	0	0
MFI2	4241	broad.mit.edu	37	3	196744020	196744020	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:196744020G>A	uc003fxk.3	-	7	967	c.854C>T	c.(853-855)GCC>GTC	p.A285V		NM_005929	NP_005920	P08582	TRFM_HUMAN	melanoma-associated antigen p97 isoform 1	285	Transferrin-like 1.				cellular iron ion homeostasis|iron ion transport	anchored to membrane|extracellular region|integral to plasma membrane	ferric iron binding|protein binding				0	all_cancers(143;3.95e-09)|Ovarian(172;0.0634)|Breast(254;0.0838)		Epithelial(36;4.55e-24)|all cancers(36;2.87e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.76e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00536)		ATCTGTGTCGGCCCGGACCAC	0.677													9	23					0	0	0.010729	0	0
BDH1	622	broad.mit.edu	37	3	197238844	197238844	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:197238844C>T	uc003fxr.2	-	8	1356	c.954G>A	c.(952-954)ATG>ATA	p.M318I	BDH1_uc003fxs.2_Missense_Mutation_p.M318I|BDH1_uc003fxt.2_Missense_Mutation_p.M231I|BDH1_uc003fxu.2_Missense_Mutation_p.M318I	NM_203314	NP_976059	Q02338	BDH_HUMAN	3-hydroxybutyrate dehydrogenase, type 1	318					cellular lipid metabolic process|ketone body biosynthetic process|ketone body catabolic process	mitochondrial matrix	3-hydroxybutyrate dehydrogenase activity			ovary(1)	1	all_cancers(143;3.35e-10)|Ovarian(172;0.0418)|Breast(254;0.0437)	Lung NSC(153;0.118)	Epithelial(36;3.52e-24)|all cancers(36;1.79e-22)|OV - Ovarian serous cystadenocarcinoma(49;2.32e-19)|LUSC - Lung squamous cell carcinoma(58;1.02e-06)|Lung(62;1.34e-06)	GBM - Glioblastoma multiforme(93;0.0977)	NADH(DB00157)	AGTAGTAGTCCATGGGGTGGT	0.592													14	90					0	0	0.001855	0	0
ZFYVE28	57732	broad.mit.edu	37	4	2306175	2306175	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:2306175G>A	uc003gex.1	-	8	2211	c.1892C>T	c.(1891-1893)TCC>TTC	p.S631F	ZFYVE28_uc011bvk.1_Missense_Mutation_p.S561F|ZFYVE28_uc011bvl.1_Missense_Mutation_p.S601F|ZFYVE28_uc003gew.1_Missense_Mutation_p.S517F	NM_020972	NP_066023	Q9HCC9	LST2_HUMAN	zinc finger, FYVE domain containing 28	631					negative regulation of epidermal growth factor receptor activity	cytosol|early endosome membrane	metal ion binding|phosphatidylinositol-3-phosphate binding|protein binding			skin(2)|ovary(1)	3						GCACTTGTCGGAAGTGGGGGC	0.662													27	29					0	0	0.005443	0	0
HTT	3064	broad.mit.edu	37	4	3214418	3214418	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:3214418C>T	uc011bvq.1	+	50	6907	c.6762C>T	c.(6760-6762)TTC>TTT	p.F2254F		NM_002111	NP_002102	P42858	HD_HUMAN	huntingtin	2252					establishment of mitotic spindle orientation|Golgi organization|retrograde vesicle-mediated transport, Golgi to ER|vesicle transport along microtubule	autophagic vacuole|axon|cytoplasmic vesicle membrane|cytosol|dendrite|endoplasmic reticulum|Golgi apparatus|late endosome|membrane fraction|nucleus|protein complex	beta-tubulin binding|dynactin binding|dynein intermediate chain binding|p53 binding|transcription factor binding			skin(2)|ovary(1)|lung(1)	4		all_epithelial(65;0.18)		UCEC - Uterine corpus endometrioid carcinoma (64;0.187)		TTGTGAAATTCGTGGTGGCAA	0.557													27	26					0	0	0.008361	0	0
WFS1	7466	broad.mit.edu	37	4	6303779	6303779	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:6303779G>A	uc003giy.2	+	8	2423	c.2257G>A	c.(2257-2259)GAG>AAG	p.E753K	WFS1_uc003gix.2_Missense_Mutation_p.E753K|WFS1_uc003giz.2_Missense_Mutation_p.E571K	NM_001145853	NP_001139325	O76024	WFS1_HUMAN	wolframin	753					endoplasmic reticulum calcium ion homeostasis|endoplasmic reticulum unfolded protein response|ER overload response|ER-associated protein catabolic process|glucose homeostasis|kidney development|negative regulation of neuron apoptosis|negative regulation of sequence-specific DNA binding transcription factor activity|polyubiquitinated misfolded protein transport|positive regulation of calcium ion transport|positive regulation of growth|positive regulation of protein ubiquitination|positive regulation of proteolysis|protein stabilization|renal water homeostasis|sensory perception of sound|visual perception	dendrite|integral to endoplasmic reticulum membrane	activating transcription factor binding|ATPase binding|transporter activity|ubiquitin protein ligase binding			central_nervous_system(2)	2				Colorectal(103;0.0512)		GGCCGAGGAGGAGCTCTGTCG	0.607													45	122					0	0	0.014410	0	0
DEFB131	644414	broad.mit.edu	37	4	9452214	9452214	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:9452214G>A	uc011bwt.1	+	2	187	c.187G>A	c.(187-189)GAA>AAA	p.E63K		NM_001040448	NP_001035538	P59861	DB131_HUMAN	defensin, beta 131 precursor	63					defense response to bacterium	extracellular region					0						GAAGATCATTGAAATTGACGG	0.363													7	8					0	0	0.003080	0	0
SLC2A9	56606	broad.mit.edu	37	4	9828112	9828112	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:9828112C>T	uc003gmc.2	-	12	1593	c.1532G>A	c.(1531-1533)AGC>AAC	p.S511N	SLC2A9_uc003gmd.2_Missense_Mutation_p.S482N	NM_020041	NP_064425	Q9NRM0	GTR9_HUMAN	solute carrier family 2, member 9 protein	511	Cytoplasmic (Potential).				glucose transport|urate metabolic process	integral to membrane|plasma membrane	sugar:hydrogen symporter activity			ovary(3)	3						AAATGCCTGGCTGATTTCTGC	0.418													36	43					0	0	0.013726	0	0
HSP90AB2P	391634	broad.mit.edu	37	4	13338463	13338463	+	RNA	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:13338463G>A	uc003gms.2	+	1		c.3427G>A				NR_003132				Homo sapiens heat shock protein 90Bb (HSP90Bb) mRNA, complete cds.											kidney(1)	1						TTTTTAGGCTGGCGCAGACAT	0.448													9	8					0	0	0.006214	0	0
C1QTNF7	114905	broad.mit.edu	37	4	15444102	15444102	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:15444102G>A	uc011bxb.1	+	3	776	c.549G>A	c.(547-549)GGG>GGA	p.G183G	C1QTNF7_uc003gno.2_Silent_p.G190G|C1QTNF7_uc003gnp.2_Silent_p.G183G	NM_001135171	NP_001128643	Q9BXJ2	C1QT7_HUMAN	C1q and tumor necrosis factor related protein 7	183	C1q.					collagen					0						CTGCCACAGGGAAGTTCATCT	0.438													84	50					0	0	0.014410	0	0
SLIT2	9353	broad.mit.edu	37	4	20598263	20598263	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:20598263G>A	uc003gpr.1	+	32	3750	c.3546G>A	c.(3544-3546)ACG>ACA	p.T1182T	SLIT2_uc003gps.1_Silent_p.T1174T	NM_004787	NP_004778	O94813	SLIT2_HUMAN	slit homolog 2 precursor	1182	Laminin G-like.				apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding			central_nervous_system(4)|skin(4)|ovary(3)	11						GGCCTCAGACGAACATAACAC	0.383													11	11					0	0	0.008291	0	0
GBA3	57733	broad.mit.edu	37	4	22737782	22737782	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:22737782C>T	uc003gqp.3	+	2	328	c.237C>T	c.(235-237)TCC>TCT	p.S79S	GBA3_uc010iep.2_Silent_p.S79S|GBA3_uc011bxo.1_Silent_p.S80S	NM_020973	NP_066024	Q9H227	GBA3_HUMAN	cytosolic beta-glucosidase isoform a	79					glycoside catabolic process|glycosylceramide catabolic process	cytosol	beta-galactosidase activity|beta-glucosidase activity|cation binding|glycosylceramidase activity				0						TCTCTCTTTCCTGGTCACGTC	0.438													56	49					0	0	0.014410	0	0
LGI2	55203	broad.mit.edu	37	4	25030152	25030152	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:25030152G>A	uc003grf.2	-	2	345	c.246C>T	c.(244-246)TCC>TCT	p.S82S		NM_018176	NP_060646	Q8N0V4	LGI2_HUMAN	leucine-rich repeat LGI family, member 2	82						extracellular region					0		Breast(46;0.173)				AAGGCAGATGGGAAAACATTC	0.522													5	5					0	0	0.001168	0	0
ARAP2	116984	broad.mit.edu	37	4	36126563	36126563	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:36126563T>C	uc003gsq.1	-	22	4005	c.3667A>G	c.(3667-3669)AAA>GAA	p.K1223E		NM_015230	NP_056045	Q8WZ64	ARAP2_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	1223	Rho-GAP.				regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytosol	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						CCATATTTTTTAATTCTTTCC	0.358													26	21					0	0	0.007291	0	0
TBC1D1	23216	broad.mit.edu	37	4	38051315	38051315	+	Missense_Mutation	SNP	T	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:38051315T>G	uc003gtb.2	+	11	2049	c.1706T>G	c.(1705-1707)CTG>CGG	p.L569R	TBC1D1_uc011byd.1_Missense_Mutation_p.L569R|TBC1D1_uc010ifd.2_Missense_Mutation_p.L316R|TBC1D1_uc011byf.1_Missense_Mutation_p.L440R	NM_015173	NP_055988	Q86TI0	TBCD1_HUMAN	TBC1 (tre-2/USP6, BUB2, cdc16) domain family,	569						nucleus	Rab GTPase activator activity			ovary(1)	1						TCGGAGGACCTGTCCAGTGAC	0.592													20	32					0	0	0.010504	0	0
TBC1D1	23216	broad.mit.edu	37	4	38138951	38138951	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:38138951G>A	uc003gtb.2	+	20	3845	c.3502G>A	c.(3502-3504)GAC>AAC	p.D1168N	TBC1D1_uc011byd.1_Missense_Mutation_p.D1159N|TBC1D1_uc010ifd.2_Missense_Mutation_p.D955N|TBC1D1_uc003gtd.2_Missense_Mutation_p.D180N	NM_015173	NP_055988	Q86TI0	TBCD1_HUMAN	TBC1 (tre-2/USP6, BUB2, cdc16) domain family,	1168						nucleus	Rab GTPase activator activity			ovary(1)	1						GCCCACGGGCGACTGACAGCT	0.662													13	11					0	0	0.002450	0	0
RBM47	54502	broad.mit.edu	37	4	40440173	40440173	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:40440173C>T	uc003gvc.2	-	4	1448	c.738G>A	c.(736-738)AAG>AAA	p.K246K	RBM47_uc003gvd.2_Silent_p.K246K|RBM47_uc003gve.2_RNA|RBM47_uc011bys.1_Silent_p.K208K|RBM47_uc003gvg.1_Silent_p.K246K	NM_001098634	NP_001092104	A0AV96	RBM47_HUMAN	RNA binding motif protein 47 isoform a	246	RRM 3.					nucleus	nucleotide binding|RNA binding			breast(3)	3						CGTAGAGGATCTTCACGGTCT	0.612													34	32					0	0	0.006230	0	0
LIMCH1	22998	broad.mit.edu	37	4	41648653	41648653	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:41648653C>T	uc003gvu.3	+	12	1462	c.1408C>T	c.(1408-1410)CAT>TAT	p.H470Y	LIMCH1_uc003gvv.3_Missense_Mutation_p.H470Y|LIMCH1_uc003gvw.3_Missense_Mutation_p.H470Y|LIMCH1_uc003gvx.3_Missense_Mutation_p.H458Y|LIMCH1_uc003gwe.3_Missense_Mutation_p.H470Y|LIMCH1_uc003gvy.3_Missense_Mutation_p.H299Y|LIMCH1_uc003gwa.3_Missense_Mutation_p.H311Y|LIMCH1_uc003gvz.3_Missense_Mutation_p.H855Y|LIMCH1_uc011byu.1_Missense_Mutation_p.H304Y|LIMCH1_uc003gwc.3_Missense_Mutation_p.H316Y|LIMCH1_uc003gwd.3_Missense_Mutation_p.H304Y|LIMCH1_uc011byv.1_Missense_Mutation_p.H221Y	NM_014988	NP_055803	Q9UPQ0	LIMC1_HUMAN	LIM and calponin homology domains 1 isoform a	470					actomyosin structure organization		actin binding|zinc ion binding			ovary(2)|pancreas(1)|skin(1)	4						GGAAAGAAGCCATTCAACAGA	0.493													74	77					0	0	0.014410	0	0
KCTD8	386617	broad.mit.edu	37	4	44176933	44176933	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:44176933C>T	uc003gwu.2	-	2	1580	c.1296G>A	c.(1294-1296)GAG>GAA	p.E432E		NM_198353	NP_938167	Q6ZWB6	KCTD8_HUMAN	potassium channel tetramerisation domain	432						cell junction|postsynaptic membrane|presynaptic membrane|voltage-gated potassium channel complex	voltage-gated potassium channel activity			central_nervous_system(2)|ovary(1)	3						CACTTAGCTTCTCACAGACTT	0.413										HNSCC(17;0.042)			72	57					0	0	0.014410	0	0
CORIN	10699	broad.mit.edu	37	4	47647188	47647188	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:47647188C>T	uc003gxm.2	-	14	1960	c.1867G>A	c.(1867-1869)GAA>AAA	p.E623K	CORIN_uc011bzf.1_Missense_Mutation_p.E484K|CORIN_uc011bzg.1_Missense_Mutation_p.E556K|CORIN_uc011bzh.1_Missense_Mutation_p.E586K	NM_006587	NP_006578	Q9Y5Q5	CORIN_HUMAN	corin	623	Extracellular (Potential).|LDL-receptor class A 6.				peptide hormone processing|regulation of systemic arterial blood pressure by atrial natriuretic peptide	integral to membrane|plasma membrane	scavenger receptor activity|serine-type endopeptidase activity|serine-type exopeptidase activity			ovary(1)|central_nervous_system(1)	2						GATGGACATTCCCAAAGATCT	0.373													27	36					0	0	0.007291	0	0
OCIAD2	132299	broad.mit.edu	37	4	48896040	48896040	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:48896040G>A	uc003gyt.2	-	5	451	c.248C>T	c.(247-249)TCA>TTA	p.S83L	OCIAD2_uc003gyu.2_Missense_Mutation_p.S83L	NM_001014446	NP_001014446	Q56VL3	OCAD2_HUMAN	OCIA domain containing 2 isoform 1	83	OCIA.					endosome					0						TTTGGGCAATGATCCAAATCT	0.159													11	17					0	0	0.003163	0	0
LRRC66	339977	broad.mit.edu	37	4	52860896	52860896	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:52860896C>T	uc003gzi.2	-	4	2305	c.2292G>A	c.(2290-2292)GGG>GGA	p.G764G		NM_001024611	NP_001019782	Q68CR7	LRC66_HUMAN	leucine rich repeat containing 66	764						integral to membrane				ovary(1)|central_nervous_system(1)|skin(1)	3						TCTTGCATTTCCCTGGAATTG	0.463													36	27					0	0	0.003755	0	0
LRRC66	339977	broad.mit.edu	37	4	52861173	52861173	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:52861173C>T	uc003gzi.2	-	4	2028	c.2015G>A	c.(2014-2016)AGA>AAA	p.R672K		NM_001024611	NP_001019782	Q68CR7	LRC66_HUMAN	leucine rich repeat containing 66	672						integral to membrane				ovary(1)|central_nervous_system(1)|skin(1)	3						ACTGTCCCATCTTGGAGGAAA	0.552													24	16					0	0	0.004656	0	0
LRRC66	339977	broad.mit.edu	37	4	52861265	52861266	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:52861265_52861266GG>AA	uc003gzi.2	-	4	1935_1936	c.1922_1923CC>TT	c.(1921-1923)TCC>TTT	p.S641F		NM_001024611	NP_001019782	Q68CR7	LRC66_HUMAN	leucine rich repeat containing 66	641						integral to membrane				ovary(1)|central_nervous_system(1)|skin(1)	3						CCCTTGCCCCGGACAGCCTTGG	0.53													21	20					0	0	0.004672	0	0
PDGFRA	5156	broad.mit.edu	37	4	55156585	55156585	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:55156585G>A	uc003han.3	+	22	3317	c.2986G>A	c.(2986-2988)GAG>AAG	p.E996K	PDGFRA_uc003haa.2_Missense_Mutation_p.E756K	NM_006206	NP_006197	P16234	PGFRA_HUMAN	platelet-derived growth factor receptor alpha	996	Cytoplasmic (Potential).		E -> K (in a metastatic melanoma sample; somatic mutation).		cardiac myofibril assembly|cell activation|luteinization|metanephric glomerular capillary formation|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of DNA replication|positive regulation of fibroblast proliferation|protein autophosphorylation|retina vasculature development in camera-type eye	cytoplasm|integral to plasma membrane|nucleus	ATP binding|platelet-derived growth factor alpha-receptor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|protein homodimerization activity|vascular endothelial growth factor receptor activity	p.E996K(1)		soft_tissue(572)|small_intestine(40)|stomach(16)|lung(16)|central_nervous_system(13)|haematopoietic_and_lymphoid_tissue(7)|skin(3)|ovary(3)|gastrointestinal_tract_(site_indeterminate)(1)|autonomic_ganglia(1)|prostate(1)|bone(1)	674	all_cancers(7;0.000425)|all_lung(4;0.000343)|Lung NSC(11;0.000467)|all_epithelial(27;0.0131)|all_neural(26;0.0209)|Glioma(25;0.08)		GBM - Glioblastoma multiforme(1;4.18e-71)|all cancers(1;4.76e-45)|LUSC - Lung squamous cell carcinoma(32;0.00256)		Becaplermin(DB00102)|Imatinib(DB00619)|Sunitinib(DB01268)	CTACAAAAACGAGGAAGACAA	0.517			Mis|O|T	FIP1L1	GIST|idiopathic hypereosinophilic syndrome				Gastrointestinal_Stromal_Tumors_Sporadic_Multiple_Primary|Familial_Intestinal_Neurofibromatosis	TSP Lung(21;0.16)			32	26					0	0	0.004289	0	0
KDR	3791	broad.mit.edu	37	4	55970896	55970896	+	Nonsense_Mutation	SNP	A	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:55970896A>T	uc003has.2	-	13	2203	c.1901T>A	c.(1900-1902)TTG>TAG	p.L634*	KDR_uc003hat.1_Nonsense_Mutation_p.L634*|KDR_uc011bzx.1_Nonsense_Mutation_p.L634*	NM_002253	NP_002244	P35968	VGFR2_HUMAN	kinase insert domain receptor precursor	634	Ig-like C2-type 6.|Extracellular (Potential).				angiogenesis|cell differentiation|interspecies interaction between organisms|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of focal adhesion assembly|positive regulation of positive chemotaxis|regulation of cell shape	integral to plasma membrane	ATP binding|growth factor binding|Hsp90 protein binding|integrin binding|receptor signaling protein tyrosine kinase activity|vascular endothelial growth factor receptor activity			lung(16)|soft_tissue(4)|central_nervous_system(4)|large_intestine(2)|stomach(2)|skin(2)|ovary(2)|kidney(1)	33	all_cancers(7;0.0255)|all_lung(4;0.00175)|Lung NSC(11;0.00384)|all_epithelial(27;0.034)|Glioma(25;0.08)|all_neural(26;0.101)		Epithelial(7;0.189)		Sorafenib(DB00398)|Sunitinib(DB01268)	TTGGTCCTGCAAGGATGCATT	0.443			Mis		NSCLC|angiosarcoma				Familial_Infantile_Hemangioma	TSP Lung(20;0.16)			14	15					0	0	0.001855	0	0
CEP135	9662	broad.mit.edu	37	4	56837483	56837483	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:56837483C>T	uc003hbi.2	+	10	1392	c.1158C>T	c.(1156-1158)CTC>CTT	p.L386L	CEP135_uc003hbj.2_Silent_p.L92L	NM_025009	NP_079285	Q66GS9	CP135_HUMAN	centrosome protein 4	386	Potential.				centriole replication|centriole-centriole cohesion|G2/M transition of mitotic cell cycle	centriole|cytosol	protein C-terminus binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	Glioma(25;0.08)|all_neural(26;0.101)					GTGATGAACTCCTTGTAAAAT	0.303													5	15					0	0	0.001984	0	0
MIR1269	100302177	broad.mit.edu	37	4	67142602	67142602	+	RNA	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:67142602G>A	hsa-mir-1269|MI0006406	+			c.61G>A																				0						accacctgaggaatgcctgga	0													20	16					0	0	0.007413	0	0
TMPRSS11A	339967	broad.mit.edu	37	4	68795677	68795677	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:68795677C>T	uc003hdr.1	-	5	532	c.411G>A	c.(409-411)AAG>AAA	p.K137K	LOC550112_uc003hdl.3_Intron|TMPRSS11A_uc003hds.1_Silent_p.K134K	NM_182606	NP_872412	Q6ZMR5	TM11A_HUMAN	transmembrane protease, serine 11A isoform 1	137	SEA.|Extracellular (Potential).				cell cycle|proteolysis	extracellular region|integral to plasma membrane	serine-type endopeptidase activity			skin(1)	1						TTTGGATTTTCTTCTCTCTTA	0.403													10	42					0	0	0.013537	0	0
YTHDC1	91746	broad.mit.edu	37	4	69185861	69185861	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:69185861G>A	uc003hdx.2	-	12	2017	c.1664C>T	c.(1663-1665)CCT>CTT	p.P555L	YTHDC1_uc003hdy.2_Missense_Mutation_p.P537L	NM_001031732	NP_001026902	Q96MU7	YTDC1_HUMAN	splicing factor YT521-B isoform 1	555	Arg-rich.									upper_aerodigestive_tract(1)|ovary(1)	2						GTGAAACTCAGGGGGATAGTC	0.313													21	14					0	0	0.006320	0	0
UGT2A3	79799	broad.mit.edu	37	4	69796481	69796481	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:69796481G>A	uc003hef.2	-	5	1118	c.1087C>T	c.(1087-1089)CAT>TAT	p.H363Y	UGT2A3_uc010ihp.1_RNA	NM_024743	NP_079019	Q6UWM9	UD2A3_HUMAN	UDP glucuronosyltransferase 2 family,	363	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(1)|skin(1)	2						GTTTTGGGATGACCTAGTATG	0.358													8	7					0	0	0.003080	0	0
UGT2B7	7364	broad.mit.edu	37	4	69962950	69962950	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:69962950G>A	uc003heg.3	+	1	758	c.712G>A	c.(712-714)GAA>AAA	p.E238K	UGT2B7_uc010ihq.2_Missense_Mutation_p.E238K	NM_001074	NP_001065	P16662	UD2B7_HUMAN	UDP glucuronosyltransferase 2B7 precursor	238					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			ovary(1)|skin(1)	2						GTTTTATAGTGAAGTTCTAGG	0.328													12	27					0	0	0.001855	0	0
SMR3A	26952	broad.mit.edu	37	4	71232443	71232443	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:71232443G>A	uc003hfg.1	+	3	218	c.137G>A	c.(136-138)GGA>GAA	p.G46E	SMR3B_uc011cas.1_Intron	NM_012390	NP_036522	Q99954	SMR3A_HUMAN	submaxillary gland androgen regulated protein 3	46	Pro-rich.					extracellular region					0		all_hematologic(202;0.196)				TTTCCTTTTGGAACAGGATTT	0.552													15	22					0	0	0.006122	0	0
SMR3A	26952	broad.mit.edu	37	4	71232694	71232694	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:71232694C>T	uc003hfg.1	+	3	469	c.388C>T	c.(388-390)CCT>TCT	p.P130S	SMR3B_uc011cas.1_Intron	NM_012390	NP_036522	Q99954	SMR3A_HUMAN	submaxillary gland androgen regulated protein 3	130	Pro-rich.					extracellular region					0		all_hematologic(202;0.196)				TCCTGCCCTCCCTACTCCTGC	0.493													5	23					0	0	0.001168	0	0
ENAM	10117	broad.mit.edu	37	4	71510536	71510536	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:71510536G>A	uc011caw.1	+	9	3674	c.3393G>A	c.(3391-3393)CAG>CAA	p.Q1131Q		NM_031889	NP_114095	Q9NRM1	ENAM_HUMAN	enamelin precursor	1131					bone mineralization|odontogenesis	proteinaceous extracellular matrix	structural constituent of tooth enamel			ovary(3)	3			Lung(101;0.235)			CCAATGTACAGGACCAGGTAC	0.423													7	19					0	0	0.004482	0	0
ADAMTS3	9508	broad.mit.edu	37	4	73149396	73149396	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:73149396G>A	uc003hgk.1	-	22	3112	c.3075C>T	c.(3073-3075)TCC>TCT	p.S1025S		NM_014243	NP_055058	O15072	ATS3_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1025	PLAC.				collagen catabolic process|collagen fibril organization|proteolysis	proteinaceous extracellular matrix	heparin binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|lung(1)	2			Epithelial(6;4.97e-05)|OV - Ovarian serous cystadenocarcinoma(6;5.66e-05)|all cancers(17;0.000486)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			GACAGAATATGGACTTGTCTC	0.368													14	25					0	0	0.003163	0	0
PARM1	25849	broad.mit.edu	37	4	75938106	75938106	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:75938106C>T	uc003hih.1	+	2	755	c.515C>T	c.(514-516)TCC>TTC	p.S172F		NM_015393	NP_056208	Q6UWI2	PARM1_HUMAN	prostatic androgen-repressed message-1	172	Extracellular (Potential).				positive regulation of telomerase activity	early endosome|endosome membrane|Golgi membrane|integral to membrane|late endosome|plasma membrane				ovary(1)	1						TTTTCTGCCTCCGTTACTACC	0.582													49	81					0	0	0.014410	0	0
PPEF2	5470	broad.mit.edu	37	4	76804350	76804350	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:76804350C>T	uc003hix.2	-	9	1109	c.752G>A	c.(751-753)GGC>GAC	p.G251D	PPEF2_uc003hiy.2_RNA|PPEF2_uc003hiz.1_Missense_Mutation_p.G251D	NM_006239	NP_006230	O14830	PPE2_HUMAN	serine/threonine protein phosphatase with	251	Catalytic.				detection of stimulus involved in sensory perception|negative regulation of MAPKKK cascade|negative regulation of peptidyl-threonine phosphorylation|protein dephosphorylation|visual perception	cytoplasm|photoreceptor inner segment|photoreceptor outer segment	calcium ion binding|Hsp70 protein binding|Hsp90 protein binding|iron ion binding|manganese ion binding|mitogen-activated protein kinase kinase kinase binding|protein serine/threonine phosphatase activity			ovary(2)|lung(1)|central_nervous_system(1)	4			Lung(101;0.0809)|LUSC - Lung squamous cell carcinoma(112;0.0934)			CTTGGTGAAGCCATATCTAGA	0.328													12	33					0	0	0.013537	0	0
NUP54	53371	broad.mit.edu	37	4	77057383	77057383	+	Missense_Mutation	SNP	G	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:77057383G>C	uc003hjs.2	-	4	606	c.478C>G	c.(478-480)CCG>GCG	p.P160A	NUP54_uc010ije.2_Intron|NUP54_uc011cbs.1_Intron|NUP54_uc011cbt.1_Missense_Mutation_p.P112A|NUP54_uc003hjt.2_Intron	NM_017426	NP_059122	Q7Z3B4	NUP54_HUMAN	nucleoporin 54kDa	160	9 X 2 AA repeats of F-G.				carbohydrate metabolic process|glucose transport|mRNA transport|regulation of glucose transport|transmembrane transport|viral reproduction	cytoplasm|nuclear membrane|nuclear pore|nucleoplasm				ovary(1)|lung(1)	2						TCCACTGGCGGAATATTATTG	0.353													27	32					0	0	0.013726	0	0
MRPL1	65008	broad.mit.edu	37	4	78873665	78873665	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:78873665C>T	uc003hku.2	+	9	1080	c.882C>T	c.(880-882)TTC>TTT	p.F294F	MRPL1_uc010iji.1_Missense_Mutation_p.S190F	NM_020236	NP_064621	Q9BYD6	RM01_HUMAN	mitochondrial ribosomal protein L1 precursor	294							RNA binding				0						TACGTGCTTTCCTTCGTAGTT	0.323													5	23					0	0	0.001984	0	0
FRAS1	80144	broad.mit.edu	37	4	79410226	79410226	+	Missense_Mutation	SNP	G	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:79410226G>T	uc003hlb.2	+	59	9390	c.8950G>T	c.(8950-8952)GGG>TGG	p.G2984W		NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	2979	Calx-beta 4.|Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						ATTTCTCAAAGGGGACAAAGT	0.398													14	17					2.31682e-05	2.47815e-05	0.003163	1	0
FRAS1	80144	broad.mit.edu	37	4	79440572	79440572	+	Missense_Mutation	SNP	T	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:79440572T>A	uc003hlb.2	+	67	10917	c.10477T>A	c.(10477-10479)TCC>ACC	p.S3493T		NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	3488	Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						GGGCTGGGCCTCCTTGGAGCA	0.532													72	67					0	0	0.014410	0	0
FRAS1	80144	broad.mit.edu	37	4	79443817	79443817	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:79443817G>A	uc003hlb.2	+	69	11103	c.10663G>A	c.(10663-10665)GAG>AAG	p.E3555K		NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	3550	Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						GTTTGTGATGGAGCATCACAC	0.438													4	6					0	0	0.000602	0	0
GK2	2712	broad.mit.edu	37	4	80329209	80329209	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:80329209T>C	uc003hlu.2	-	1	164	c.146A>G	c.(145-147)AAA>AGA	p.K49R		NM_033214	NP_149991	Q14410	GLPK2_HUMAN	glycerol kinase 2	49					glycerol-3-phosphate metabolic process	mitochondrial outer membrane	ATP binding|glycerol kinase activity			ovary(2)|skin(2)	4						CCATCCTTCTTTTGGGAACTC	0.418													31	35					0	0	0.008361	0	0
FGF5	2250	broad.mit.edu	37	4	81188190	81188190	+	Missense_Mutation	SNP	G	A	A	rs139356908		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:81188190G>A	uc003hmd.2	+	1	449	c.212G>A	c.(211-213)GGA>GAA	p.G71E	FGF5_uc003hme.2_Missense_Mutation_p.G71E	NM_004464	NP_004455	P12034	FGF5_HUMAN	fibroblast growth factor 5 isoform 1 precursor	71					cell proliferation|cell-cell signaling|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|positive regulation of cell division|positive regulation of cell proliferation	extracellular space	fibroblast growth factor receptor binding|growth factor activity	p.G71V(1)		ovary(1)|breast(1)	2						GGCAGCCAAGGAAGTGGCTTG	0.612													20	47					0	0	0.014323	0	0
WDFY3	23001	broad.mit.edu	37	4	85674967	85674967	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:85674967G>A	uc003hpd.2	-	35	6030	c.5622C>T	c.(5620-5622)TTC>TTT	p.F1874F		NM_014991	NP_055806	Q8IZQ1	WDFY3_HUMAN	WD repeat and FYVE domain containing 3 isoform	1874						cytoplasmic part|extrinsic to membrane|nuclear envelope	1-phosphatidylinositol binding|metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000808)		AATATCTGAAGAACTGCATCA	0.483													12	23					0	0	0.013537	0	0
MAPK10	5602	broad.mit.edu	37	4	87019692	87019693	+	Missense_Mutation	DNP	AG	GA	GA			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:87019692_87019693AG>GA	uc003hpq.2	-	8	853_854	c.786_787CT>TC	c.(784-789)CTCTTT>CTTCTT	p.F263L	MAPK10_uc010ikg.2_Missense_Mutation_p.F225L|MAPK10_uc003hpr.2_Missense_Mutation_p.F225L|MAPK10_uc003hps.2_Missense_Mutation_p.F263L|MAPK10_uc003hpt.2_Missense_Mutation_p.F263L|MAPK10_uc003hpu.2_Intron|MAPK10_uc003hpv.2_Intron|MAPK10_uc003hpn.2_Missense_Mutation_p.F11L|MAPK10_uc003hpo.2_Missense_Mutation_p.F118L|MAPK10_uc011ccw.1_Intron|MAPK10_uc003hpp.2_Missense_Mutation_p.F118L	NM_138982	NP_620448	P53779	MK10_HUMAN	mitogen-activated protein kinase 10 isoform 2	263	Protein kinase.				innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|regulation of sequence-specific DNA binding transcription factor activity|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|JUN kinase activity|MAP kinase kinase activity|protein binding			stomach(1)|breast(1)|central_nervous_system(1)	3		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.243)		OV - Ovarian serous cystadenocarcinoma(123;0.002)		CTTCCTGGAAAGAGGATTTTGT	0.416													33	27					0	0	0.004672	0	0
HSD17B13	345275	broad.mit.edu	37	4	88243985	88243985	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:88243985G>A	uc003hqo.2	-	1	72	c.9C>T	c.(7-9)ATC>ATT	p.I3I	HSD17B13_uc010ikk.2_Silent_p.I3I	NM_178135	NP_835236	Q7Z5P4	DHB13_HUMAN	hydroxysteroid (17-beta) dehydrogenase 13	3						extracellular region	binding|oxidoreductase activity				0		Acute lymphoblastic leukemia(40;0.244)|all_hematologic(202;0.248)		OV - Ovarian serous cystadenocarcinoma(123;0.000308)		TTTCTAGGATGATGTTCATGG	0.488													9	4					0	0	0.008291	0	0
HERC3	8916	broad.mit.edu	37	4	89608440	89608440	+	Nonsense_Mutation	SNP	A	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:89608440A>T	uc003hrw.1	+	23	2813	c.2647A>T	c.(2647-2649)AAG>TAG	p.K883*	HERC3_uc011cdn.1_Nonsense_Mutation_p.K765*|HERC3_uc011cdo.1_Nonsense_Mutation_p.K327*	NM_014606	NP_055421	Q15034	HERC3_HUMAN	hect domain and RLD 3	883					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasmic membrane-bounded vesicle	ubiquitin-protein ligase activity			lung(2)|prostate(1)|skin(1)	4				OV - Ovarian serous cystadenocarcinoma(123;0.000319)		AACTGTGTGCAAGGATAACAG	0.348													9	6					0	0	0.006214	0	0
GRID2	2895	broad.mit.edu	37	4	94006276	94006276	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:94006276G>A	uc011cdt.1	+	3	633	c.375G>A	c.(373-375)GGG>GGA	p.G125G	GRID2_uc010ikx.2_Silent_p.G125G|GRID2_uc011cdu.1_Intron|GRID2_uc011cdv.1_RNA	NM_001510	NP_001501	O43424	GRID2_HUMAN	glutamate receptor, ionotropic, delta 2	125	Extracellular (Potential).				glutamate signaling pathway	cell junction|integral to plasma membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.177)		OV - Ovarian serous cystadenocarcinoma(123;3.22e-06)|LUSC - Lung squamous cell carcinoma(81;0.185)|Lung(65;0.191)	L-Glutamic Acid(DB00142)	CAACAGCTGGGACCCCAAGGA	0.557													23	22					0	0	0.003330	0	0
GRID2	2895	broad.mit.edu	37	4	94137898	94137898	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:94137898G>A	uc011cdt.1	+	6	1057	c.799G>A	c.(799-801)GAT>AAT	p.D267N	GRID2_uc010ikx.2_Missense_Mutation_p.D267N|GRID2_uc011cdu.1_Missense_Mutation_p.D172N|GRID2_uc010ikz.1_5'UTR	NM_001510	NP_001501	O43424	GRID2_HUMAN	glutamate receptor, ionotropic, delta 2	267	Extracellular (Potential).				glutamate signaling pathway	cell junction|integral to plasma membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.177)		OV - Ovarian serous cystadenocarcinoma(123;3.22e-06)|LUSC - Lung squamous cell carcinoma(81;0.185)|Lung(65;0.191)	L-Glutamic Acid(DB00142)	GGAAATAAACGATGTGGACGT	0.378													22	25					0	0	0.014323	0	0
GRID2	2895	broad.mit.edu	37	4	94436461	94436461	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:94436461C>T	uc011cdt.1	+	13	2350	c.2092C>T	c.(2092-2094)CCT>TCT	p.P698S	GRID2_uc011cdu.1_Missense_Mutation_p.P603S	NM_001510	NP_001501	O43424	GRID2_HUMAN	glutamate receptor, ionotropic, delta 2	698	Extracellular (Potential).				glutamate signaling pathway	cell junction|integral to plasma membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.177)		OV - Ovarian serous cystadenocarcinoma(123;3.22e-06)|LUSC - Lung squamous cell carcinoma(81;0.185)|Lung(65;0.191)	L-Glutamic Acid(DB00142)	AGGACTGAATCCTTTTGAGAG	0.478													15	7					0	0	0.004007	0	0
PDHA2	5161	broad.mit.edu	37	4	96761419	96761419	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:96761419G>A	uc003htr.3	+	1	181	c.118G>A	c.(118-120)GAT>AAT	p.D40N		NM_005390	NP_005381	P29803	ODPAT_HUMAN	pyruvate dehydrogenase E1 alpha 2 precursor	40					glycolysis	mitochondrial matrix	pyruvate dehydrogenase (acetyl-transferring) activity			central_nervous_system(1)	1		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;1.23e-06)	NADH(DB00157)	TAAGAAATGTGATCTTTATCT	0.512													8	9					0	0	0.003080	0	0
ADH1B	125	broad.mit.edu	37	4	100239334	100239334	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:100239334G>A	uc003hus.3	-	3	212	c.128C>T	c.(127-129)GCT>GTT	p.A43V	ADH1A_uc011ceg.1_Intron|ADH1B_uc003hut.3_Missense_Mutation_p.A3V|ADH1B_uc011ceh.1_5'UTR|ADH1B_uc011cei.1_Missense_Mutation_p.A3V	NM_000668	NP_000659	P00325	ADH1B_HUMAN	class I alcohol dehydrogenase, beta subunit	43					ethanol oxidation|xenobiotic metabolic process	cytosol	alcohol dehydrogenase activity, zinc-dependent|zinc ion binding			ovary(1)|breast(1)	2				OV - Ovarian serous cystadenocarcinoma(123;1.02e-07)	Fomepizole(DB01213)|NADH(DB00157)	GATTCCTACAGCCACCATCTA	0.438													32	39					0	0	0.003271	0	0
ADH1C	126	broad.mit.edu	37	4	100261858	100261858	+	Missense_Mutation	SNP	G	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:100261858G>T	uc003huu.2	-	9	923	c.838C>A	c.(838-840)CTG>ATG	p.L280M		NM_000669	NP_000660	P00326	ADH1G_HUMAN	class I alcohol dehydrogenase, gamma subunit	280					ethanol oxidation|xenobiotic metabolic process	cytosol	alcohol dehydrogenase (NAD) activity|zinc ion binding				0				OV - Ovarian serous cystadenocarcinoma(123;1.08e-07)	Fomepizole(DB01213)|NADH(DB00157)	CAACATAACAGGGAAGCCATC	0.418									Naso-/Oropharyngeal/Laryngeal_Cancer_Familial_Clustering_of				42	39					7.66079e-34	8.28837e-34	0.010771	1	0
MANBA	4126	broad.mit.edu	37	4	103610769	103610769	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:103610769C>T	uc003hwg.2	-	7	1022	c.922G>A	c.(922-924)GAA>AAA	p.E308K	MANBA_uc011ces.1_Missense_Mutation_p.E251K	NM_005908	NP_005899	O00462	MANBA_HUMAN	mannosidase, beta A, lysosomal precursor	308					carbohydrate metabolic process|protein modification process	lysosome	beta-mannosidase activity|cation binding			ovary(1)	1		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;4.44e-08)		CCATCCAGTTCAAAAAGAACA	0.269													31	25					0	0	0.004878	0	0
TACR3	6870	broad.mit.edu	37	4	104510993	104510994	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:104510993_104510994GG>AA	uc003hxe.1	-	5	1386_1387	c.1243_1244CC>TT	c.(1243-1245)CCC>TTC	p.P415F		NM_001059	NP_001050	P29371	NK3R_HUMAN	tachykinin receptor 3	415	Cytoplasmic (Potential).					integral to plasma membrane	tachykinin receptor activity			ovary(3)|lung(2)|breast(1)|skin(1)	7		Hepatocellular(203;0.217)		UCEC - Uterine corpus endometrioid carcinoma (10;0.22)|OV - Ovarian serous cystadenocarcinoma(123;3.4e-08)		TGCATCGTTGGGGTCAAACACG	0.515													25	112					0	0	0.004672	0	0
TBCK	93627	broad.mit.edu	37	4	107092295	107092295	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:107092295G>A	uc010ilv.2	-	23	2557	c.2192C>T	c.(2191-2193)CCT>CTT	p.P731L	TBCK_uc003hyb.2_Missense_Mutation_p.P474L|TBCK_uc003hye.2_Missense_Mutation_p.P692L|TBCK_uc003hyc.2_Missense_Mutation_p.P668L|TBCK_uc003hyd.2_Missense_Mutation_p.P559L|TBCK_uc003hyf.2_Missense_Mutation_p.P731L	NM_001163435	NP_001156907	Q8TEA7	TBCK_HUMAN	TBC domain-containing protein kinase-like	731						intracellular	Rab GTPase activator activity			large_intestine(2)|upper_aerodigestive_tract(1)|stomach(1)|ovary(1)	5						AGAGAAATAAGGTGCCGAACT	0.418													23	27					0	0	0.003330	0	0
CASP6	839	broad.mit.edu	37	4	110617579	110617579	+	Silent	SNP	G	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:110617579G>C	uc003hzn.1	-	4	372	c.294C>G	c.(292-294)CTC>CTG	p.L98L	CASP6_uc003hzo.1_Intron	NM_001226	NP_001217	P55212	CASP6_HUMAN	caspase 6 isoform alpha preproprotein	98					cellular component disassembly involved in apoptosis|induction of apoptosis|proteolysis	cytosol|nucleoplasm	cysteine-type endopeptidase activity|protein binding			ovary(1)|breast(1)	2		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.000171)		CATGAATTTTGAGCAGTAGTT	0.328													16	14					0	0	0.004990	0	0
CFI	3426	broad.mit.edu	37	4	110667403	110667403	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:110667403G>A	uc003hzr.3	-	11	1612	c.1404C>T	c.(1402-1404)ATC>ATT	p.I468I	CFI_uc003hzq.2_Silent_p.I265I|CFI_uc011cft.1_Silent_p.I476I|CFI_uc003hzs.3_Silent_p.I461I	NM_000204	NP_000195	P05156	CFAI_HUMAN	complement factor I preproprotein	468	Peptidase S1.				complement activation, classical pathway|innate immune response|proteolysis	extracellular space|membrane	scavenger receptor activity|serine-type endopeptidase activity				0		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.000331)		AGCCAGAAACGATGCATGTAT	0.408													7	27					0	0	0.001984	0	0
LRIT3	345193	broad.mit.edu	37	4	110791074	110791074	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:110791074C>T	uc003hzx.3	+	3	1227	c.1034C>T	c.(1033-1035)TCC>TTC	p.S345F	LRIT3_uc003hzw.3_Missense_Mutation_p.S207F	NM_198506	NP_940908	Q3SXY7	LRIT3_HUMAN	leucine-rich repeat, immunoglobulin-like and	345	Ser-rich.					integral to membrane					0				OV - Ovarian serous cystadenocarcinoma(123;0.0011)		TGGtcctcttccttctccccc	0.224													18	58					0	0	0.006122	0	0
C4orf21	55345	broad.mit.edu	37	4	113540840	113540840	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:113540840G>A	uc003iau.2	-	6	569	c.358C>T	c.(358-360)CAA>TAA	p.Q120*	C4orf21_uc003iaw.2_Nonsense_Mutation_p.Q120*	NM_018392	NP_060862	Q6ZU11	YD002_HUMAN	prematurely terminated mRNA decay factor-like	Error:Variant_position_missing_in_Q6ZU11_after_alignment						integral to membrane	zinc ion binding				0		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000676)		CGTGGTCCTTGAAAACCCTGA	0.363													17	16					0	0	0.007413	0	0
ANK2	287	broad.mit.edu	37	4	114278605	114278605	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:114278605C>T	uc003ibe.3	+	38	8931	c.8831C>T	c.(8830-8832)ACC>ATC	p.T2944I	ANK2_uc003ibd.3_Intron|ANK2_uc003ibf.3_Intron|ANK2_uc011cgc.1_Intron|ANK2_uc003ibg.3_Intron|ANK2_uc003ibh.3_Intron|ANK2_uc011cgd.1_Missense_Mutation_p.T246I|ANK2_uc011cgb.1_Missense_Mutation_p.T2959I	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	2911					axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		GAAAGCAAAACCCAAACAGAT	0.408													49	33					0	0	0.014410	0	0
ANK2	287	broad.mit.edu	37	4	114286205	114286205	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:114286205C>T	uc003ibe.3	+	41	10999	c.10899C>T	c.(10897-10899)CTC>CTT	p.L3633L	ANK2_uc003ibd.3_Silent_p.L1539L|ANK2_uc003ibf.3_Silent_p.L1548L|ANK2_uc011cgc.1_Silent_p.L724L|ANK2_uc003ibg.3_Silent_p.L532L|ANK2_uc003ibh.3_Silent_p.L222L|ANK2_uc011cgd.1_Silent_p.L935L	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	3600	Death.				axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		ATACCAACCTCGTTGAATGTC	0.388													32	29					0	0	0.013726	0	0
CAMK2D	817	broad.mit.edu	37	4	114378625	114378625	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:114378625C>T	uc003ibi.2	-	17	2158	c.1299G>A	c.(1297-1299)AGG>AGA	p.R433R	CAMK2D_uc003ibj.2_Silent_p.R433R|CAMK2D_uc003ibk.2_Silent_p.R433R|CAMK2D_uc003ibo.3_Silent_p.R467R|CAMK2D_uc003ibm.2_Silent_p.R447R|CAMK2D_uc003ibn.2_Silent_p.R444R|CAMK2D_uc003ibl.2_Silent_p.R433R	NM_001221	NP_001212	Q13557	KCC2D_HUMAN	calcium/calmodulin-dependent protein kinase II	433					interferon-gamma-mediated signaling pathway|regulation of cell growth|synaptic transmission	calcium- and calmodulin-dependent protein kinase complex|cytosol|endocytic vesicle membrane|nucleoplasm|plasma membrane	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			ovary(1)	1		Ovarian(17;0.00369)|Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.000271)		ACTGTGTGAGCCTAATATATG	0.458													34	34					0	0	0.012213	0	0
PRSS12	8492	broad.mit.edu	37	4	119256771	119256771	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:119256771C>T	uc003ica.1	-	3	724	c.677G>A	c.(676-678)GGA>GAA	p.G226E		NM_003619	NP_003610	P56730	NETR_HUMAN	neurotrypsin precursor	226	SRCR 1.					membrane	scavenger receptor activity			skin(1)	1						AAGGCCCAGTCCAGAAAACGG	0.403													25	22					0	0	0.007291	0	0
SEC24D	9871	broad.mit.edu	37	4	119666174	119666174	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:119666174G>A	uc003ici.3	-	14	2021	c.1749C>T	c.(1747-1749)TCC>TCT	p.S583S	SEC24D_uc003ich.3_RNA|SEC24D_uc003icj.3_Silent_p.S584S|SEC24D_uc003icl.2_RNA	NM_014822	NP_055637	O94855	SC24D_HUMAN	Sec24-related protein D	583					COPII vesicle coating|intracellular protein transport|post-translational protein modification|protein N-linked glycosylation via asparagine	COPII vesicle coat|cytosol|endoplasmic reticulum membrane|Golgi membrane|perinuclear region of cytoplasm	zinc ion binding				0						CAGTTGGCAAGGAAGAATGGA	0.398													29	23					0	0	0.009535	0	0
PRDM5	11107	broad.mit.edu	37	4	121720822	121720822	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:121720822G>A	uc003idn.2	-	9	1274	c.1024C>T	c.(1024-1026)CAC>TAC	p.H342Y	PRDM5_uc003ido.2_Missense_Mutation_p.H311Y|PRDM5_uc010ine.2_Missense_Mutation_p.H311Y	NM_018699	NP_061169	Q9NQX1	PRDM5_HUMAN	PR domain containing 5	342	C2H2-type 6.				histone deacetylation|histone H3-K9 methylation|mitotic cell cycle|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	repressing transcription factor binding|sequence-specific DNA binding|transcription regulatory region DNA binding|zinc ion binding			central_nervous_system(1)|pancreas(1)	2						TTACCTGAGTGGGTGATCATA	0.244													8	11					0	0	0.003080	0	0
C4orf31	79625	broad.mit.edu	37	4	121957507	121957507	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:121957507G>A	uc003idq.1	-	4	2146	c.1619C>T	c.(1618-1620)TCT>TTT	p.S540F		NM_024574	NP_078850	Q8TB73	CD031_HUMAN	hypothetical protein LOC79625 precursor	540	Fibronectin type-III 2.										0						CAGCAGGTAAGATTTGCCAGG	0.403													25	21					0	0	0.005443	0	0
TRPC3	7222	broad.mit.edu	37	4	122854062	122854062	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:122854062G>A	uc003ieg.2	-	2	425	c.351C>T	c.(349-351)CTC>CTT	p.L117L	TRPC3_uc010inr.2_Silent_p.L44L|TRPC3_uc003ief.2_Silent_p.L44L|TRPC3_uc011cgl.1_5'UTR	NM_001130698	NP_001124170	Q13507	TRPC3_HUMAN	transient receptor potential cation channel,	32	Cytoplasmic (Potential).|ANK 1.				axon guidance|phototransduction|platelet activation	integral to plasma membrane	protein binding|store-operated calcium channel activity			ovary(2)	2						CGGCGGCGTCGAGGAAGCGCT	0.657													15	21					0	0	0.004007	0	0
FAT4	79633	broad.mit.edu	37	4	126241317	126241317	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:126241317A>G	uc003ifj.3	+	1	3751	c.3751A>G	c.(3751-3753)AAA>GAA	p.K1251E		NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	1251	Cadherin 12.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						TTCTATAATAAAAGGAAATGA	0.368													12	12					0	0	0.002450	0	0
FAT4	79633	broad.mit.edu	37	4	126329794	126329794	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:126329794G>A	uc003ifj.3	+	4	5765	c.5765G>A	c.(5764-5766)GGG>GAG	p.G1922E	FAT4_uc011cgp.1_Missense_Mutation_p.G220E	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	1922	Cadherin 18.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						GAAGATGGTGGGGGACAATTT	0.338													18	18					0	0	0.008871	0	0
FAT4	79633	broad.mit.edu	37	4	126411609	126411609	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:126411609G>A	uc003ifj.3	+	17	13632	c.13632G>A	c.(13630-13632)AAG>AAA	p.K4544K	FAT4_uc011cgp.1_Silent_p.K2785K|FAT4_uc003ifi.1_Silent_p.K2021K	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	4544	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						AGAAACCGAAGGAGAAGAAGA	0.517													19	26					0	0	0.007413	0	0
FAT4	79633	broad.mit.edu	37	4	126412421	126412421	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:126412421C>T	uc003ifj.3	+	17	14444	c.14444C>T	c.(14443-14445)TCA>TTA	p.S4815L	FAT4_uc011cgp.1_Missense_Mutation_p.S3056L|FAT4_uc003ifi.1_Missense_Mutation_p.S2292L	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	4815	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						AGGTCTTCTTCAGAGGAGGAC	0.507													18	18					0	0	0.008871	0	0
FAT4	79633	broad.mit.edu	37	4	126412820	126412820	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:126412820A>G	uc003ifj.3	+	17	14843	c.14843A>G	c.(14842-14844)AAA>AGA	p.K4948R	FAT4_uc011cgp.1_Missense_Mutation_p.K3189R|FAT4_uc003ifi.1_Missense_Mutation_p.K2425R	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	4948	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						GATGTTTTTAAAGATTTGGCA	0.473													17	7					0	0	0.007413	0	0
PCDH18	54510	broad.mit.edu	37	4	138451759	138451759	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:138451759C>T	uc003ihe.3	-	1	1871	c.1484G>A	c.(1483-1485)GGA>GAA	p.G495E	PCDH18_uc003ihf.3_Missense_Mutation_p.G488E|PCDH18_uc011cgz.1_Intron|PCDH18_uc003ihg.3_Missense_Mutation_p.G275E|PCDH18_uc011cha.1_Intron	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	495	Extracellular (Potential).|Cadherin 5.				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					CCCATTTTCTCCAAGATCAGG	0.413													17	65					0	0	0.012319	0	0
PCDH18	54510	broad.mit.edu	37	4	138452467	138452467	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:138452467G>A	uc003ihe.3	-	1	1163	c.776C>T	c.(775-777)TCC>TTC	p.S259F	PCDH18_uc003ihf.3_Missense_Mutation_p.S252F|PCDH18_uc011cgz.1_Intron|PCDH18_uc003ihg.3_Missense_Mutation_p.S39F|PCDH18_uc011cha.1_Intron	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	259	Cadherin 3.|Extracellular (Potential).				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					GCCAACCGGGGAGTTTTCTAA	0.428													21	27					0	0	0.010504	0	0
PCDH18	54510	broad.mit.edu	37	4	138452772	138452772	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:138452772G>A	uc003ihe.3	-	1	858	c.471C>T	c.(469-471)CCC>CCT	p.P157P	PCDH18_uc003ihf.3_Silent_p.P150P|PCDH18_uc011cgz.1_Intron|PCDH18_uc003ihg.3_5'UTR|PCDH18_uc011cha.1_Intron	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	157	Extracellular (Potential).|Cadherin 2.				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					CACTGTCCAGGGGAATGCGAG	0.443													10	11					0	0	0.010729	0	0
SLC7A11	23657	broad.mit.edu	37	4	139163186	139163186	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:139163186C>T	uc011chb.1	-	1	318	c.38G>A	c.(37-39)GGA>GAA	p.G13E		NM_014331	NP_055146	Q9UPY5	XCT_HUMAN	solute carrier family 7, (cationic amino acid	13	Cytoplasmic (Potential).				blood coagulation|cellular nitrogen compound metabolic process|leukocyte migration|response to toxin	integral to membrane|plasma membrane	cystine:glutamate antiporter activity|protein binding			skin(1)	1	all_hematologic(180;0.166)				L-Cystine(DB00138)|L-Glutamic Acid(DB00142)|Sulfasalazine(DB00795)	CAGGTAACCTCCTTTGGAGAT	0.488													8	10					0	0	0.004482	0	0
MAML3	55534	broad.mit.edu	37	4	140641356	140641356	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:140641356C>T	uc003ihz.1	-	7	3275	c.2523G>A	c.(2521-2523)ACG>ACA	p.T841T	MGST2_uc010ioi.1_Intron|MAML3_uc011chd.1_Silent_p.T309T	NM_018717	NP_061187	Q96JK9	MAML3_HUMAN	mastermind-like 3	842	Gln-rich.				Notch signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear speck	transcription coactivator activity			ovary(1)	1	all_hematologic(180;0.162)					CGGTGGCCATCGTCCCAGGGT	0.597													63	80					0	0	0.014410	0	0
ZNF827	152485	broad.mit.edu	37	4	146824066	146824066	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:146824066G>A	uc003ikn.2	-	2	393	c.345C>T	c.(343-345)TCC>TCT	p.S115S	ZNF827_uc003ikm.2_Silent_p.S115S|ZNF827_uc010iox.2_Intron	NM_178835	NP_849157	Q17R98	ZN827_HUMAN	zinc finger protein 827	115					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_hematologic(180;0.151)					GGGGCTTGTTGGAGCCTGGGT	0.582													4	27					0	0	0.009096	0	0
EDNRA	1909	broad.mit.edu	37	4	148463676	148463676	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:148463676C>T	uc003iky.2	+	8	1882	c.1190C>T	c.(1189-1191)TCG>TTG	p.S397L	EDNRA_uc011cid.1_Missense_Mutation_p.S172L|EDNRA_uc010ipf.1_RNA|EDNRA_uc010ipg.1_Missense_Mutation_p.S288L	NM_001957	NP_001948	P25101	EDNRA_HUMAN	endothelin receptor type A isoform a precursor	397	Cytoplasmic (Potential).				activation of adenylate cyclase activity|artery smooth muscle contraction|cell proliferation|glucose transport|respiratory gaseous exchange	integral to plasma membrane	endothelin-A receptor activity|phosphatidylinositol phospholipase C activity			ovary(1)|breast(1)	2	all_hematologic(180;0.151)			GBM - Glioblastoma multiforme(119;0.154)	Bosentan(DB00559)	CTGATGACCTCGGTCCCCATG	0.552													18	23					0	0	0.008871	0	0
LRBA	987	broad.mit.edu	37	4	151203676	151203676	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:151203676C>T	uc010ipj.2	-	56	8749	c.8275G>A	c.(8275-8277)GAA>AAA	p.E2759K	LRBA_uc010ipi.2_Missense_Mutation_p.E281K|LRBA_uc003ils.3_Missense_Mutation_p.E654K|LRBA_uc003ilt.3_Missense_Mutation_p.E1407K|LRBA_uc003ilu.3_Missense_Mutation_p.E2747K|LRBA_uc003ilr.3_Missense_Mutation_p.E179K	NM_006726	NP_006717	P50851	LRBA_HUMAN	LPS-responsive vesicle trafficking, beach and	2759						endoplasmic reticulum|Golgi apparatus|integral to membrane|lysosome|plasma membrane	protein binding			ovary(3)|breast(3)|skin(1)	7	all_hematologic(180;0.151)					AGGCCGTTTTCATAGAATATG	0.458													13	58					0	0	0.001855	0	0
FBXW7	55294	broad.mit.edu	37	4	153245389	153245389	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:153245389G>A	uc003ims.2	-	11	1951	c.1802C>T	c.(1801-1803)TCT>TTT	p.S601F	FBXW7_uc011cii.1_Missense_Mutation_p.S601F|FBXW7_uc003imt.2_Missense_Mutation_p.S601F|FBXW7_uc011cih.1_Missense_Mutation_p.S425F|FBXW7_uc003imq.2_Missense_Mutation_p.S521F|FBXW7_uc003imr.2_Missense_Mutation_p.S483F	NM_033632	NP_361014	Q969H0	FBXW7_HUMAN	F-box and WD repeat domain containing 7 isoform	601	WD 6.				interspecies interaction between organisms|lipid homeostasis|negative regulation of DNA endoreduplication|negative regulation of hepatocyte proliferation|negative regulation of Notch signaling pathway|negative regulation of triglyceride biosynthetic process|positive regulation of epidermal growth factor receptor activity|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|protein stabilization|protein ubiquitination|regulation of lipid storage|regulation of protein localization|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process|sister chromatid cohesion|vasculature development	nucleolus|nucleolus|nucleoplasm|nucleoplasm|SCF ubiquitin ligase complex	protein binding|protein binding			haematopoietic_and_lymphoid_tissue(125)|large_intestine(99)|stomach(16)|lung(14)|endometrium(13)|ovary(9)|biliary_tract(8)|upper_aerodigestive_tract(5)|central_nervous_system(3)|kidney(3)|skin(3)|pancreas(3)|breast(2)|prostate(2)|cervix(1)|NS(1)|bone(1)	308	all_hematologic(180;0.093)	Acute lymphoblastic leukemia(8;0.000629)|all_hematologic(8;0.067)				TTTAACTGTAGAATCTGCATT	0.383			Mis|N|D|F		colorectal|endometrial|T-ALL								12	19					0	0	0.003163	0	0
DCHS2	54798	broad.mit.edu	37	4	155256162	155256162	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:155256162G>A	uc003inw.2	-	8	1074	c.1074C>T	c.(1072-1074)GTC>GTT	p.V358V	DCHS2_uc003inx.2_Silent_p.V857V	NM_017639	NP_060109	Q6V1P9	PCD23_HUMAN	dachsous 2 isoform 1	358	Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|pancreas(1)	4	all_hematologic(180;0.208)	Renal(120;0.0854)		LUSC - Lung squamous cell carcinoma(193;0.107)		CGGCATTAATGACAGCTGTGA	0.433													15	10					0	0	0.002450	0	0
RBM46	166863	broad.mit.edu	37	4	155719258	155719258	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:155719258C>T	uc003ioo.2	+	3	620	c.447C>T	c.(445-447)CCC>CCT	p.P149P	RBM46_uc011cim.1_Silent_p.P149P|RBM46_uc003iop.1_Silent_p.P149P	NM_144979	NP_659416	Q8TBY0	RBM46_HUMAN	RNA binding motif protein 46	149	RRM 2.						nucleotide binding|RNA binding			central_nervous_system(1)|skin(1)	2	all_hematologic(180;0.24)	Renal(120;0.0854)				GAGCTATTCCCAAGGAAAAGA	0.328													19	17					0	0	0.008871	0	0
TLL1	7092	broad.mit.edu	37	4	166935613	166935613	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:166935613C>T	uc003irh.1	+	8	1590	c.943C>T	c.(943-945)CCC>TCC	p.P315S	TLL1_uc011cjn.1_Missense_Mutation_p.P315S|TLL1_uc011cjo.1_Missense_Mutation_p.P139S	NM_012464	NP_036596	O43897	TLL1_HUMAN	tolloid-like 1 precursor	315	Metalloprotease (By similarity).				cell differentiation|proteolysis|skeletal system development	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	all_hematologic(180;0.221)	Melanoma(52;0.0315)|Prostate(90;0.0405)		GBM - Glioblastoma multiforme(119;0.103)		TACCATTCTCCCCTCCCGTGA	0.438													59	79					0	0	0.014410	0	0
TLL1	7092	broad.mit.edu	37	4	166946575	166946575	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:166946575G>A	uc003irh.1	+	9	1797	c.1150G>A	c.(1150-1152)GGG>AGG	p.G384R	TLL1_uc011cjn.1_Missense_Mutation_p.G384R|TLL1_uc011cjo.1_Missense_Mutation_p.G208R	NM_012464	NP_036596	O43897	TLL1_HUMAN	tolloid-like 1 precursor	384	CUB 1.				cell differentiation|proteolysis|skeletal system development	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	all_hematologic(180;0.221)	Melanoma(52;0.0315)|Prostate(90;0.0405)		GBM - Glioblastoma multiforme(119;0.103)		TGTGACCCCAGGGGAGAAGGT	0.388													27	20					0	0	0.006320	0	0
ANXA10	11199	broad.mit.edu	37	4	169086397	169086397	+	Splice_Site	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:169086397G>A	uc003irm.2	+	6	546	c.401_splice	c.e6-1	p.Q134_splice	ANXA10_uc003irn.2_Missense_Mutation_p.E6K	NM_007193	NP_009124	Q9UJ72	ANX10_HUMAN	annexin A10								calcium ion binding|calcium-dependent phospholipid binding				0		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.0325)		TTCTTATACAGAATACAGCAA	0.348													16	8					0	0	0.004990	0	0
DDX60	55601	broad.mit.edu	37	4	169138161	169138161	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:169138161C>T	uc003irp.2	-	38	5354	c.5062G>A	c.(5062-5064)GAA>AAA	p.E1688K	DDX60_uc003iro.2_3'UTR	NM_017631	NP_060101	Q8IY21	DDX60_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	1688							ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.0485)		TCTTCATTTTCACATAGCTCA	0.363													18	21					0	0	0.010504	0	0
DDX60	55601	broad.mit.edu	37	4	169158547	169158547	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:169158547C>T	uc003irp.2	-	32	4593	c.4301G>A	c.(4300-4302)GGG>GAG	p.G1434E		NM_017631	NP_060101	Q8IY21	DDX60_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	1434							ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.0485)		TCCAGCAAACCCCATAGGATT	0.338													8	15					0	0	0.006214	0	0
DDX60	55601	broad.mit.edu	37	4	169158553	169158553	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:169158553G>A	uc003irp.2	-	32	4587	c.4295C>T	c.(4294-4296)CCT>CTT	p.P1432L		NM_017631	NP_060101	Q8IY21	DDX60_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	1432							ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.0485)		AAACCCCATAGGATTACCTTC	0.323													7	15					0	0	0.003080	0	0
DDX60	55601	broad.mit.edu	37	4	169167643	169167643	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:169167643G>A	uc003irp.2	-	30	4382	c.4090C>T	c.(4090-4092)CTC>TTC	p.L1364F		NM_017631	NP_060101	Q8IY21	DDX60_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	1364	Helicase C-terminal.						ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.0485)		GTTATGCTGAGAGGGAAGTGT	0.488													24	15					0	0	0.003330	0	0
HAND2	9464	broad.mit.edu	37	4	174450173	174450173	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:174450173G>A	uc003ith.1	-	1	1206	c.268C>T	c.(268-270)CCG>TCG	p.P90S	NBLA00301_uc011ckd.1_5'Flank|NBLA00301_uc003itl.3_5'Flank|NBLA00301_uc003itj.2_5'Flank|NBLA00301_uc010irf.2_5'Flank|NBLA00301_uc010irg.2_5'Flank|NBLA00301_uc010irh.2_5'Flank|NBLA00301_uc010iri.2_5'Flank|NBLA00301_uc010irj.2_5'Flank|NBLA00301_uc010irk.2_5'Flank|NBLA00301_uc010irl.2_5'Flank|NBLA00301_uc010irm.2_5'Flank|NBLA00301_uc010irn.2_5'Flank|NBLA00301_uc003itk.2_5'Flank|HAND2_uc003itg.1_Intron|HAND2_uc010ire.1_Missense_Mutation_p.P90S	NM_021973	NP_068808	P61296	HAND2_HUMAN	basic helix-loop-helix transcription factor	90					adult heart development|angiogenesis|apoptosis|cardiac neural crest cell development involved in outflow tract morphogenesis|heart looping|in utero embryonic development|negative regulation of cardiac muscle cell apoptosis|noradrenergic neuron differentiation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription regulatory region DNA binding|regulation of secondary heart field cardioblast proliferation|thymus development	nuclear chromatin|transcription factor complex	activating transcription factor binding|protein homodimerization activity|RNA polymerase II regulatory region sequence-specific DNA binding|transcription coactivator activity			skin(1)	1		Prostate(90;0.00601)|Renal(120;0.0183)|Melanoma(52;0.0749)|all_neural(102;0.0837)|all_hematologic(60;0.107)		all cancers(43;1.37e-18)|Epithelial(43;5.5e-17)|OV - Ovarian serous cystadenocarcinoma(60;3.3e-10)|STAD - Stomach adenocarcinoma(60;0.00273)|GBM - Glioblastoma multiforme(59;0.0064)|LUSC - Lung squamous cell carcinoma(193;0.0903)|Kidney(143;0.249)		cccaggcccgggggcccggcg	0.493													12	6					0	0	0.013537	0	0
MORF4	10934	broad.mit.edu	37	4	174537177	174537177	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:174537177G>A	uc011cke.1	-	1	618	c.618C>T	c.(616-618)TTC>TTT	p.F206F		NM_006792	NP_006783			mortality factor 4												0		Prostate(90;0.00201)|Renal(120;0.0183)|Melanoma(52;0.0749)|all_neural(102;0.0765)|all_hematologic(60;0.107)		all cancers(43;1.88e-18)|Epithelial(43;1.19e-16)|OV - Ovarian serous cystadenocarcinoma(60;1.38e-09)|STAD - Stomach adenocarcinoma(60;0.00273)|GBM - Glioblastoma multiforme(59;0.0064)|LUSC - Lung squamous cell carcinoma(193;0.0903)|Kidney(143;0.249)		GGTACTTTAGGAAATCGTGAA	0.423													15	17					0	0	0.002450	0	0
GLRA3	8001	broad.mit.edu	37	4	175598361	175598361	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:175598361G>A	uc003ity.1	-	7	1298	c.795C>T	c.(793-795)CTC>CTT	p.L265L	GLRA3_uc003itz.1_Silent_p.L265L	NM_006529	NP_006520	O75311	GLRA3_HUMAN	glycine receptor, alpha 3 isoform a	265	Helical; (Probable).				synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|glycine binding|receptor activity|transmitter-gated ion channel activity			ovary(3)	3		Prostate(90;0.00601)|Breast(14;0.0091)|Melanoma(52;0.00959)|Renal(120;0.0183)|all_neural(102;0.0891)|all_hematologic(60;0.107)		all cancers(43;4.99e-18)|Epithelial(43;1.18e-16)|OV - Ovarian serous cystadenocarcinoma(60;5.88e-09)|STAD - Stomach adenocarcinoma(60;0.00442)|GBM - Glioblastoma multiforme(59;0.0102)|LUSC - Lung squamous cell carcinoma(193;0.0421)	Glycine(DB00145)	TAACAATCAGGAGACTGGGAA	0.458													9	11					0	0	0.004482	0	0
GLRA3	8001	broad.mit.edu	37	4	175649825	175649825	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:175649825G>A	uc003ity.1	-	4	795	c.292C>T	c.(292-294)CGT>TGT	p.R98C	GLRA3_uc003itz.1_Missense_Mutation_p.R98C	NM_006529	NP_006520	O75311	GLRA3_HUMAN	glycine receptor, alpha 3 isoform a	98	Extracellular (Probable).				synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|glycine binding|receptor activity|transmitter-gated ion channel activity			ovary(3)	3		Prostate(90;0.00601)|Breast(14;0.0091)|Melanoma(52;0.00959)|Renal(120;0.0183)|all_neural(102;0.0891)|all_hematologic(60;0.107)		all cancers(43;4.99e-18)|Epithelial(43;1.18e-16)|OV - Ovarian serous cystadenocarcinoma(60;5.88e-09)|STAD - Stomach adenocarcinoma(60;0.00442)|GBM - Glioblastoma multiforme(59;0.0102)|LUSC - Lung squamous cell carcinoma(193;0.0421)	Glycine(DB00145)	CATTTCTGACGAAGAAAGATA	0.378													22	29					0	0	0.014323	0	0
ODZ3	55714	broad.mit.edu	37	4	183650163	183650163	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:183650163C>T	uc003ivd.1	+	13	2451	c.2414C>T	c.(2413-2415)TCC>TTC	p.S805F	ODZ3_uc003ive.1_Missense_Mutation_p.S211F	NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	805	Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		CTACAGAGTTCCTGCCAGAAT	0.468													11	11					0	0	0.010729	0	0
ODZ3	55714	broad.mit.edu	37	4	183664443	183664443	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:183664443C>T	uc003ivd.1	+	18	3537	c.3500C>T	c.(3499-3501)GCT>GTT	p.A1167V	ODZ3_uc003ive.1_Missense_Mutation_p.A573V	NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	1167	Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		AATGGTCAAGCTGATGGTAAC	0.547													13	17					0	0	0.013537	0	0
LRP2BP	55805	broad.mit.edu	37	4	186295301	186295301	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr4:186295301C>T	uc003ixj.1	-	5	1379	c.567G>A	c.(565-567)AAG>AAA	p.K189K	LRP2BP_uc003ixk.1_Silent_p.K163K|LRP2BP_uc011ckr.1_Silent_p.K189K	NM_018409	NP_060879	Q9P2M1	LR2BP_HUMAN	LRP2 binding protein	189	Sel1-like 3.					cytoplasm	protein binding				0		all_lung(41;1.3e-11)|Lung NSC(41;2.25e-11)|Melanoma(20;0.00109)|Colorectal(36;0.0215)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_hematologic(60;0.0749)		all cancers(43;2.14e-25)|Epithelial(43;1.55e-22)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-11)|BRCA - Breast invasive adenocarcinoma(30;8.01e-05)|GBM - Glioblastoma multiforme(59;0.000132)|STAD - Stomach adenocarcinoma(60;0.000766)|Colorectal(24;0.00116)|LUSC - Lung squamous cell carcinoma(40;0.00904)|COAD - Colon adenocarcinoma(29;0.0101)|READ - Rectum adenocarcinoma(43;0.161)		TTTCTAACTCCTTGGGCTCCT	0.403													19	21					0	0	0.008871	0	0
PLEKHG4B	153478	broad.mit.edu	37	5	161927	161927	+	Silent	SNP	G	A	A	rs116463546	by1000genomes	TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:161927G>A	uc003jak.2	+	10	1499	c.1449G>A	c.(1447-1449)GCG>GCA	p.A483A		NM_052909	NP_443141	Q96PX9	PKH4B_HUMAN	pleckstrin homology domain containing, family G	483					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			skin(2)	2			all cancers(22;0.0253)|Lung(60;0.113)	Kidney(1;0.119)		TACAGCTGGCGAAGGAGAACC	0.587													12	27					0	0	0.013537	0	0
PLEKHG4B	153478	broad.mit.edu	37	5	161961	161961	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:161961C>T	uc003jak.2	+	10	1533	c.1483C>T	c.(1483-1485)CAG>TAG	p.Q495*		NM_052909	NP_443141	Q96PX9	PKH4B_HUMAN	pleckstrin homology domain containing, family G	495					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			skin(2)	2			all cancers(22;0.0253)|Lung(60;0.113)	Kidney(1;0.119)		GGAAATGGTCCAGGATTTCAG	0.597													7	28					0	0	0.003080	0	0
SLC9A3	6550	broad.mit.edu	37	5	482666	482666	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:482666G>A	uc003jbe.2	-	7	1465	c.1353C>T	c.(1351-1353)TTC>TTT	p.F451F	SLC9A3_uc011clx.1_Silent_p.F451F	NM_004174	NP_004165	P48764	SL9A3_HUMAN	solute carrier family 9 (sodium/hydrogen	451	Helical; Name=M/M10; (Potential).					cell surface|integral to membrane	sodium:hydrogen antiporter activity				0			Epithelial(17;0.000529)|OV - Ovarian serous cystadenocarcinoma(19;0.00153)|all cancers(22;0.00186)|Lung(60;0.0863)			GCCTCACCTGGAAGATGACGG	0.622													17	44					0	0	0.012319	0	0
SLC6A18	348932	broad.mit.edu	37	5	1239564	1239564	+	Splice_Site	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:1239564G>A	uc003jby.1	+	6	856	c.733_splice	c.e6-1	p.M245_splice		NM_182632	NP_872438	Q96N87	S6A18_HUMAN	solute carrier family 6, member 18						cellular nitrogen compound metabolic process	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			ovary(1)	1	all_cancers(3;2.99e-16)|Lung NSC(6;8.55e-15)|all_lung(6;7.2e-14)|all_epithelial(6;1.76e-10)		Epithelial(17;0.000356)|all cancers(22;0.00124)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			ACTCATTCCAGATGCACATTC	0.567													13	47					0	0	0.002450	0	0
ADAMTS16	170690	broad.mit.edu	37	5	5235159	5235159	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:5235159C>T	uc003jdl.2	+	13	2021	c.1883C>T	c.(1882-1884)TCC>TTC	p.S628F	ADAMTS16_uc003jdk.1_Missense_Mutation_p.S628F|ADAMTS16_uc010itk.1_RNA	NM_139056	NP_620687	Q8TE57	ATS16_HUMAN	ADAM metallopeptidase with thrombospondin type 1	628	TSP type-1 1.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(3)|lung(2)|large_intestine(1)|breast(1)|pancreas(1)	8						TGTGAGGGCTCCACTCGCACT	0.453													7	41					0	0	0.004482	0	0
SEMA5A	9037	broad.mit.edu	37	5	9063102	9063102	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:9063102C>T	uc003jek.2	-	18	3127	c.2415G>A	c.(2413-2415)CGG>CGA	p.R805R		NM_003966	NP_003957	Q13591	SEM5A_HUMAN	semaphorin 5A precursor	805	TSP type-1 5.|Extracellular (Potential).				cell adhesion|cell-cell signaling	integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)	2						GCTTCCGGTTCCGAATGCCCC	0.592													13	39					0	0	0.002450	0	0
CCT5	22948	broad.mit.edu	37	5	10256136	10256136	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:10256136C>T	uc003jeq.2	+	4	572	c.401C>T	c.(400-402)GCC>GTC	p.A134V	CCT5_uc011cmq.1_Intron|CCT5_uc003jer.2_Missense_Mutation_p.A134V|CCT5_uc010its.2_Missense_Mutation_p.A134V|CCT5_uc011cmr.1_Missense_Mutation_p.A79V|CCT5_uc011cms.1_Missense_Mutation_p.A96V|CCT5_uc011cmt.1_Missense_Mutation_p.A41V	NM_012073	NP_036205	P48643	TCPE_HUMAN	chaperonin containing TCP1, subunit 5 (epsilon)	134					'de novo' posttranslational protein folding|response to virus	microtubule organizing center|nucleolus	ATP binding|unfolded protein binding			ovary(2)	2						ATCAGAATAGCCGATGGCTAT	0.502													9	14					0	0	0.010729	0	0
MARCH6	10299	broad.mit.edu	37	5	10426625	10426625	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:10426625C>T	uc003jet.1	+	24	2680	c.2497C>T	c.(2497-2499)CCT>TCT	p.P833S	MARCH6_uc011cmu.1_Missense_Mutation_p.P785S|MARCH6_uc003jeu.1_Missense_Mutation_p.P531S|MARCH6_uc011cmv.1_Missense_Mutation_p.P728S	NM_005885	NP_005876	O60337	MARH6_HUMAN	membrane-associated ring finger (C3HC4) 6	833	Helical; (Potential).				protein K48-linked ubiquitination	integral to endoplasmic reticulum membrane	ubiquitin conjugating enzyme binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|breast(1)	2						TGGTGTTGTTCCTTTACTAGG	0.433													26	62					0	0	0.008361	0	0
ROPN1L	83853	broad.mit.edu	37	5	10465004	10465004	+	Missense_Mutation	SNP	T	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:10465004T>A	uc003jex.3	+	5	909	c.638T>A	c.(637-639)TTT>TAT	p.F213Y		NM_031916	NP_114122	Q96C74	ROP1L_HUMAN	ropporin 1-like	213					ciliary or flagellar motility|signal transduction	cytoplasm|motile cilium	cAMP-dependent protein kinase regulator activity|protein binding			ovary(1)	1						GATTTCTTCTTTCCAAAGAGG	0.313													22	40					0	0	0.007291	0	0
CTNND2	1501	broad.mit.edu	37	5	11111000	11111000	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:11111000C>T	uc003jfa.1	-	14	2578	c.2433G>A	c.(2431-2433)AAG>AAA	p.K811K	CTNND2_uc010itt.2_Silent_p.K720K|CTNND2_uc011cmy.1_Silent_p.K474K|CTNND2_uc011cmz.1_Silent_p.K378K|CTNND2_uc010itu.1_RNA|CTNND2_uc011cmx.1_Silent_p.K378K	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	811	Poly-Lys.				multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						TCTTCTTCTTCTTGCCCCAGC	0.512													53	154					0	0	0.014410	0	0
CTNND2	1501	broad.mit.edu	37	5	11565118	11565118	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:11565118G>A	uc003jfa.1	-	3	370	c.225C>T	c.(223-225)ATC>ATT	p.I75I	CTNND2_uc010itt.2_5'UTR|CTNND2_uc011cmy.1_5'UTR|CTNND2_uc011cmz.1_5'UTR|CTNND2_uc010itu.1_RNA	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	75	Potential.				multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						GGCTGGCTACGATCTGCCGTT	0.512													6	12					0	0	0.001984	0	0
DNAH5	1767	broad.mit.edu	37	5	13692125	13692125	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:13692125G>A	uc003jfd.2	-	79	13885	c.13843C>T	c.(13843-13845)CGT>TGT	p.R4615C	DNAH5_uc003jfc.2_Missense_Mutation_p.R783C	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	4615					microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GCAACCCCACGGAGCACCCAG	0.483									Kartagener_syndrome				12	38					0	0	0.010729	0	0
DNAH5	1767	broad.mit.edu	37	5	13719031	13719031	+	Silent	SNP	A	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:13719031A>T	uc003jfd.2	-	72	12501	c.12459T>A	c.(12457-12459)CCT>CCA	p.P4153P	DNAH5_uc003jfc.2_Silent_p.P321P	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	4153	AAA 6 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GTCCTTGTGGAGGATCGTTGG	0.448									Kartagener_syndrome				23	38					0	0	0.003954	0	0
DNAH5	1767	broad.mit.edu	37	5	13721267	13721267	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:13721267G>A	uc003jfd.2	-	71	12163	c.12121C>T	c.(12121-12123)CCA>TCA	p.P4041S	DNAH5_uc003jfc.2_Missense_Mutation_p.P209S	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	4041	AAA 6 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GGCGTCCGTGGATCAGATTCC	0.483									Kartagener_syndrome				18	70					0	0	0.007413	0	0
DNAH5	1767	broad.mit.edu	37	5	13727761	13727761	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:13727761G>A	uc003jfd.2	-	70	11930	c.11888C>T	c.(11887-11889)TCG>TTG	p.S3963L	DNAH5_uc003jfc.2_Missense_Mutation_p.S131L	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3963					microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CTCATTTCTCGATATCTGAAA	0.398									Kartagener_syndrome				11	24					0	0	0.013537	0	0
DNAH5	1767	broad.mit.edu	37	5	13762882	13762882	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:13762882C>T	uc003jfd.2	-	60	10272	c.10230G>A	c.(10228-10230)ACG>ACA	p.T3410T	DNAH5_uc003jfc.2_5'UTR	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3410	Stalk (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CCATAGCTTTCGTCCAGGAAC	0.453									Kartagener_syndrome				14	27					0	0	0.003163	0	0
DNAH5	1767	broad.mit.edu	37	5	13793772	13793772	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:13793772C>T	uc003jfd.2	-	49	8118	c.8076G>A	c.(8074-8076)GGG>GGA	p.G2692G		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	2692	AAA 3 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TGGTGAACTCCCCAGGCTTCT	0.443									Kartagener_syndrome				14	71					0	0	0.001855	0	0
DNAH5	1767	broad.mit.edu	37	5	13793832	13793832	+	Silent	SNP	C	T	T	rs112594597		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:13793832C>T	uc003jfd.2	-	49	8058	c.8016G>A	c.(8014-8016)ACG>ACA	p.T2672T		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	2672	AAA 3 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CTATCTCATTCGTAACCTACA	0.423									Kartagener_syndrome				10	39					0	0	0.008291	0	0
DNAH5	1767	broad.mit.edu	37	5	13817700	13817700	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:13817700C>T	uc003jfd.2	-	42	6987	c.6945G>A	c.(6943-6945)GGG>GGA	p.G2315G		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	2315	AAA 2 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TAGAAAATATCCCATCAGTCC	0.403									Kartagener_syndrome				14	29					0	0	0.001855	0	0
DNAH5	1767	broad.mit.edu	37	5	13841984	13841984	+	Silent	SNP	A	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:13841984A>T	uc003jfd.2	-	33	5343	c.5301T>A	c.(5299-5301)TCT>TCA	p.S1767S		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1767	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CACCCTCTTGAGAGGAAATTG	0.333									Kartagener_syndrome				17	38					0	0	0.004990	0	0
DNAH5	1767	broad.mit.edu	37	5	13865808	13865808	+	Missense_Mutation	SNP	T	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:13865808T>A	uc003jfd.2	-	27	4366	c.4324A>T	c.(4324-4326)ATT>TTT	p.I1442F		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1442	Potential.|Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TCATTGTTAATTTTTTCAATA	0.318									Kartagener_syndrome				12	30					0	0	0.001855	0	0
DNAH5	1767	broad.mit.edu	37	5	13882846	13882846	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:13882846C>T	uc003jfd.2	-	21	3295	c.3253G>A	c.(3253-3255)GAA>AAA	p.E1085K		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1085	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CCTTGAAGTTCATTTTCTCCC	0.303									Kartagener_syndrome				9	29					0	0	0.006214	0	0
DNAH5	1767	broad.mit.edu	37	5	13900509	13900509	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:13900509G>A	uc003jfd.2	-	15	2107	c.2065C>T	c.(2065-2067)CAT>TAT	p.H689Y		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	689	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					AGACCTACATGAATTTCTTCA	0.373									Kartagener_syndrome				4	16					0	0	0.000602	0	0
FAM105A	54491	broad.mit.edu	37	5	14607445	14607445	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:14607445G>A	uc003jfj.2	+	6	618	c.505G>A	c.(505-507)GAA>AAA	p.E169K		NM_019018	NP_061891	Q9NUU6	F105A_HUMAN	hypothetical protein LOC54491	169										ovary(1)	1	Lung NSC(4;0.00592)					CAAGCTTCCTGAAAAACTGCT	0.368													15	33					0	0	0.004990	0	0
ANKH	56172	broad.mit.edu	37	5	14758692	14758692	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:14758692C>T	uc003jfm.3	-	3	660	c.329G>A	c.(328-330)GGA>GAA	p.G110E		NM_054027	NP_473368	Q9HCJ1	ANKH_HUMAN	progressive ankylosis protein	110	Extracellular (Potential).				locomotory behavior|regulation of bone mineralization|skeletal system development	integral to plasma membrane|outer membrane	inorganic diphosphate transmembrane transporter activity|inorganic phosphate transmembrane transporter activity			upper_aerodigestive_tract(1)	1						AATGTAGTATCCTAAATCACT	0.398													20	33					0	0	0.014323	0	0
ZNF622	90441	broad.mit.edu	37	5	16453243	16453243	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:16453243G>A	uc003jfq.2	-	5	1305	c.1185C>T	c.(1183-1185)TCC>TCT	p.S395S		NM_033414	NP_219482	Q969S3	ZN622_HUMAN	zinc finger protein 622	395						cytoplasm|nucleus	nucleic acid binding|zinc ion binding			ovary(1)	1						ATCTCATCAAGGAGCGATGAC	0.478													12	48					0	0	0.010729	0	0
CDH18	1016	broad.mit.edu	37	5	19473628	19473628	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:19473628C>T	uc003jgc.2	-	12	2457	c.2080G>A	c.(2080-2082)GAA>AAA	p.E694K	CDH18_uc003jgd.2_Missense_Mutation_p.E694K|CDH18_uc011cnm.1_3'UTR	NM_004934	NP_004925	Q13634	CAD18_HUMAN	cadherin 18, type 2 preproprotein	694	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|large_intestine(1)|skin(1)	7	Lung NSC(1;0.00734)|all_lung(1;0.0197)					AGCTTCACTTCAGGTCTGATA	0.507													18	18					0	0	0.004990	0	0
CDH18	1016	broad.mit.edu	37	5	19483609	19483609	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:19483609C>T	uc003jgc.2	-	11	2060	c.1683G>A	c.(1681-1683)CAG>CAA	p.Q561Q	CDH18_uc003jgd.2_Silent_p.Q561Q|CDH18_uc011cnm.1_Intron	NM_004934	NP_004925	Q13634	CAD18_HUMAN	cadherin 18, type 2 preproprotein	561	Extracellular (Potential).|Cadherin 5.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|large_intestine(1)|skin(1)	7	Lung NSC(1;0.00734)|all_lung(1;0.0197)					AATACACATCCTGAACAGTTC	0.463													3	18					0	0	0.004672	0	0
CDH18	1016	broad.mit.edu	37	5	19571923	19571923	+	Missense_Mutation	SNP	T	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:19571923T>G	uc003jgc.2	-	7	1395	c.1018A>C	c.(1018-1020)AAG>CAG	p.K340Q	CDH18_uc003jgd.2_Missense_Mutation_p.K340Q|CDH18_uc011cnm.1_Missense_Mutation_p.K340Q	NM_004934	NP_004925	Q13634	CAD18_HUMAN	cadherin 18, type 2 preproprotein	340	Extracellular (Potential).|Cadherin 3.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|large_intestine(1)|skin(1)	7	Lung NSC(1;0.00734)|all_lung(1;0.0197)					TATGACTTCTTTTTCTCATAG	0.308													9	21					0	0	0.010729	0	0
CDH10	1008	broad.mit.edu	37	5	24505229	24505229	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:24505229G>A	uc003jgr.1	-	8	1717	c.1385C>T	c.(1384-1386)GCT>GTT	p.A462V	CDH10_uc011cnu.1_Intron	NM_006727	NP_006718	Q9Y6N8	CAD10_HUMAN	cadherin 10, type 2 preproprotein	462	Cadherin 4.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|pancreas(4)|breast(2)	12				STAD - Stomach adenocarcinoma(35;0.0556)		ACTGATTTCAGCAGCAATAAC	0.274										HNSCC(23;0.051)			11	17					0	0	0.002450	0	0
CDH10	1008	broad.mit.edu	37	5	24535818	24535818	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:24535818C>T	uc003jgr.1	-	4	972	c.640G>A	c.(640-642)GAA>AAA	p.E214K	CDH10_uc011cnu.1_RNA	NM_006727	NP_006718	Q9Y6N8	CAD10_HUMAN	cadherin 10, type 2 preproprotein	214	Cadherin 2.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|pancreas(4)|breast(2)	12				STAD - Stomach adenocarcinoma(35;0.0556)		TGACCTGTTTCAGGCTCCACA	0.428										HNSCC(23;0.051)			4	25					0	0	0.001168	0	0
RNASEN	29102	broad.mit.edu	37	5	31451648	31451648	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:31451648G>A	uc003jhg.2	-	20	3033	c.2674C>T	c.(2674-2676)CTG>TTG	p.L892L	RNASEN_uc003jhh.2_Silent_p.L855L|RNASEN_uc003jhi.2_Silent_p.L855L	NM_013235	NP_037367	Q9NRR4	RNC_HUMAN	ribonuclease III, nuclear isoform 1	892	Necessary for interaction with DGCR8 and pri-miRNA processing activity.|RNase III 1.				gene silencing by RNA|ribosome biogenesis|RNA processing	nucleolus|nucleoplasm	double-stranded RNA binding|metal ion binding|protein binding|ribonuclease III activity				0						ACCTGCAACAGACAACGATCT	0.403													3	10					0	0	0.004672	0	0
PDZD2	23037	broad.mit.edu	37	5	32000348	32000348	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:32000348G>A	uc003jhl.2	+	5	1613	c.1225G>A	c.(1225-1227)GGA>AGA	p.G409R	PDZD2_uc003jhm.2_Missense_Mutation_p.G409R|PDZD2_uc011cnx.1_Missense_Mutation_p.G235R	NM_178140	NP_835260	O15018	PDZD2_HUMAN	PDZ domain containing 2	409	PDZ 2.				cell adhesion	cell-cell junction|endoplasmic reticulum|extracellular region|nucleus				central_nervous_system(4)|ovary(2)|skin(2)|large_intestine(1)	9						CTCCGCCACGGGAATGGTGCA	0.557													18	80					0	0	0.012319	0	0
PDZD2	23037	broad.mit.edu	37	5	32071494	32071494	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:32071494C>T	uc003jhl.2	+	16	2926	c.2538C>T	c.(2536-2538)ACC>ACT	p.T846T	PDZD2_uc003jhm.2_Silent_p.T846T|PDZD2_uc011cnx.1_Silent_p.T672T	NM_178140	NP_835260	O15018	PDZD2_HUMAN	PDZ domain containing 2	846					cell adhesion	cell-cell junction|endoplasmic reticulum|extracellular region|nucleus				central_nervous_system(4)|ovary(2)|skin(2)|large_intestine(1)	9						CAACAGGTACCCCCTTGAAGA	0.468													22	75					0	0	0.003330	0	0
PDZD2	23037	broad.mit.edu	37	5	32087274	32087274	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:32087274G>A	uc003jhl.2	+	20	4108	c.3720G>A	c.(3718-3720)GGG>GGA	p.G1240G	PDZD2_uc003jhm.2_Silent_p.G1240G	NM_178140	NP_835260	O15018	PDZD2_HUMAN	PDZ domain containing 2	1240					cell adhesion	cell-cell junction|endoplasmic reticulum|extracellular region|nucleus				central_nervous_system(4)|ovary(2)|skin(2)|large_intestine(1)	9						CTTCCCCAGGGAAGAAGGGGG	0.567													15	48					0	0	0.003163	0	0
ADAMTS12	81792	broad.mit.edu	37	5	33576787	33576787	+	Missense_Mutation	SNP	G	A	A	rs149776016	byFrequency	TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:33576787G>A	uc003jia.1	-	19	3507	c.3344C>T	c.(3343-3345)TCG>TTG	p.S1115L	ADAMTS12_uc010iuq.1_Missense_Mutation_p.S1030L	NM_030955	NP_112217	P58397	ATS12_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1115	Spacer 2.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)	9						GCCTCCCTCCGAGGTAGGACC	0.493										HNSCC(64;0.19)			16	27					0	0	0.004007	0	0
ADAMTS12	81792	broad.mit.edu	37	5	33616128	33616128	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:33616128C>T	uc003jia.1	-	15	2356	c.2193G>A	c.(2191-2193)GTG>GTA	p.V731V	ADAMTS12_uc010iuq.1_Silent_p.V646V	NM_030955	NP_112217	P58397	ATS12_HUMAN	ADAM metallopeptidase with thrombospondin type 1	731	Spacer 1.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)	9						CAATTTCCATCACTCTTATGT	0.448										HNSCC(64;0.19)			9	32					0	0	0.006214	0	0
SLC45A2	51151	broad.mit.edu	37	5	33964039	33964039	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:33964039G>A	uc003jid.2	-	3	737	c.645C>T	c.(643-645)TTC>TTT	p.F215F	SLC45A2_uc003jie.2_Silent_p.F215F|SLC45A2_uc003jif.3_Intron|SLC45A2_uc011coe.1_Intron	NM_016180	NP_057264	Q9UMX9	S45A2_HUMAN	membrane-associated transporter protein isoform	215	Extracellular (Potential).				melanin biosynthetic process|response to stimulus|transmembrane transport|visual perception	integral to membrane|melanosome membrane				ovary(2)|haematopoietic_and_lymphoid_tissue(1)	3						ACATGACCTGGAATTCTGTAC	0.488													11	22					0	0	0.008291	0	0
AGXT2	64902	broad.mit.edu	37	5	35037047	35037047	+	Missense_Mutation	SNP	C	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:35037047C>A	uc003jjf.2	-	4	565	c.486G>T	c.(484-486)AAG>AAT	p.K162N	AGXT2_uc011com.1_Missense_Mutation_p.K162N|AGXT2_uc011con.1_Missense_Mutation_p.K70N	NM_031900	NP_114106	Q9BYV1	AGT2_HUMAN	alanine-glyoxylate aminotransferase 2 precursor	162					glyoxylate metabolic process|pyrimidine base metabolic process|pyrimidine nucleoside catabolic process	mitochondrial matrix	(R)-3-amino-2-methylpropionate-pyruvate transaminase activity|alanine-glyoxylate transaminase activity|pyridoxal phosphate binding			ovary(3)|skin(1)	4	all_lung(31;4.52e-05)		COAD - Colon adenocarcinoma(61;0.174)|Colorectal(62;0.229)	GBM - Glioblastoma multiforme(108;0.181)	Glycine(DB00145)|L-Alanine(DB00160)|Pyridoxal Phosphate(DB00114)|Pyruvic acid(DB00119)	AGCATTGTACCTTAAGAGGCT	0.502													8	52					1.58986e-06	1.70406e-06	0.008291	1	0
PRLR	5618	broad.mit.edu	37	5	35066041	35066042	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:35066041_35066042GG>AA	uc003jjm.2	-	10	1548_1549	c.1018_1019CC>TT	c.(1018-1020)CCC>TTC	p.P340F	PRLR_uc003jjg.1_Intron|PRLR_uc003jjh.1_Intron|PRLR_uc003jji.1_Intron|PRLR_uc003jjj.1_Intron|PRLR_uc003jjk.1_Intron|PRLR_uc003jjl.3_Missense_Mutation_p.P239F	NM_000949	NP_000940	P16471	PRLR_HUMAN	prolactin receptor precursor	340	Cytoplasmic (Potential).				activation of JAK2 kinase activity|activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|embryo implantation|lactation|steroid biosynthetic process|T cell activation	cell surface|extracellular region|integral to membrane	metal ion binding|ornithine decarboxylase activator activity|peptide hormone binding|prolactin receptor activity|protein homodimerization activity			ovary(2)|skin(1)	3	all_lung(31;3.83e-05)		COAD - Colon adenocarcinoma(61;0.174)|Colorectal(62;0.229)		Dromostanolone(DB00858)|Fluoxymesterone(DB01185)|Pegvisomant(DB00082)|Somatropin recombinant(DB00052)	CAGGTATGTGGGTTTCATACCT	0.495													5	45					0	0	0.004672	0	0
PRLR	5618	broad.mit.edu	37	5	35066066	35066066	+	Nonsense_Mutation	SNP	C	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:35066066C>A	uc003jjm.2	-	10	1524	c.994G>T	c.(994-996)GAA>TAA	p.E332*	PRLR_uc003jjg.1_Nonsense_Mutation_p.E332*|PRLR_uc003jjh.1_Intron|PRLR_uc003jji.1_Intron|PRLR_uc003jjj.1_Intron|PRLR_uc003jjk.1_Intron|PRLR_uc003jjl.3_Nonsense_Mutation_p.E231*	NM_000949	NP_000940	P16471	PRLR_HUMAN	prolactin receptor precursor	332	Cytoplasmic (Potential).				activation of JAK2 kinase activity|activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|embryo implantation|lactation|steroid biosynthetic process|T cell activation	cell surface|extracellular region|integral to membrane	metal ion binding|ornithine decarboxylase activator activity|peptide hormone binding|prolactin receptor activity|protein homodimerization activity			ovary(2)|skin(1)	3	all_lung(31;3.83e-05)		COAD - Colon adenocarcinoma(61;0.174)|Colorectal(62;0.229)		Dromostanolone(DB00858)|Fluoxymesterone(DB01185)|Pegvisomant(DB00082)|Somatropin recombinant(DB00052)	CTTGGGTGTTCTTTTGAATGG	0.478													16	35					1.96292e-10	2.11377e-10	0.010504	1	0
SPEF2	79925	broad.mit.edu	37	5	35727890	35727890	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:35727890G>A	uc003jjo.2	+	21	3139	c.3028G>A	c.(3028-3030)GAA>AAA	p.E1010K	SPEF2_uc003jjp.1_Missense_Mutation_p.E496K	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	1010					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			GCCAGGATCAGAAGAATGGGT	0.423													8	36					0	0	0.006214	0	0
SPEF2	79925	broad.mit.edu	37	5	35727893	35727893	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:35727893G>A	uc003jjo.2	+	21	3142	c.3031G>A	c.(3031-3033)GAA>AAA	p.E1011K	SPEF2_uc003jjp.1_Missense_Mutation_p.E497K	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	1011					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			AGGATCAGAAGAATGGGTCTA	0.428													15	29					0	0	0.004990	0	0
SLC1A3	6507	broad.mit.edu	37	5	36677139	36677139	+	Missense_Mutation	SNP	T	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:36677139T>G	uc003jkj.3	+	6	1189	c.713T>G	c.(712-714)GTG>GGG	p.V238G	SLC1A3_uc011cox.1_Missense_Mutation_p.V131G|SLC1A3_uc010iuy.2_Missense_Mutation_p.V238G	NM_004172	NP_004163	P43003	EAA1_HUMAN	solute carrier family 1 (glial high affinity	238	Helical; (Potential).				D-aspartate import|L-glutamate import|neurotransmitter uptake	integral to membrane|membrane fraction	high-affinity glutamate transmembrane transporter activity|sodium:dicarboxylate symporter activity				0	all_lung(31;0.000245)		Epithelial(62;0.0444)|Lung(74;0.111)|all cancers(62;0.128)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)		L-Glutamic Acid(DB00142)	CCAGGATCTGTGAATGGAGTC	0.507													10	33					0	0	0.008291	0	0
SLC1A3	6507	broad.mit.edu	37	5	36680625	36680625	+	Missense_Mutation	SNP	T	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:36680625T>G	uc003jkj.3	+	8	1699	c.1223T>G	c.(1222-1224)TTG>TGG	p.L408W	SLC1A3_uc011cox.1_Missense_Mutation_p.L301W|SLC1A3_uc010iuy.2_Missense_Mutation_p.L408W	NM_004172	NP_004163	P43003	EAA1_HUMAN	solute carrier family 1 (glial high affinity	408					D-aspartate import|L-glutamate import|neurotransmitter uptake	integral to membrane|membrane fraction	high-affinity glutamate transmembrane transporter activity|sodium:dicarboxylate symporter activity				0	all_lung(31;0.000245)		Epithelial(62;0.0444)|Lung(74;0.111)|all cancers(62;0.128)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)		L-Glutamic Acid(DB00142)	TATGAGGCTTTGGCTGCCATT	0.458													12	29					0	0	0.001855	0	0
EGFLAM	133584	broad.mit.edu	37	5	38406325	38406325	+	Missense_Mutation	SNP	G	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:38406325G>T	uc003jlc.1	+	7	1134	c.810G>T	c.(808-810)TTG>TTT	p.L270F	EGFLAM_uc003jlb.1_Missense_Mutation_p.L270F|EGFLAM_uc003jle.1_Missense_Mutation_p.L36F|EGFLAM_uc003jlf.1_Intron	NM_152403	NP_689616	Q63HQ2	EGFLA_HUMAN	EGF-like, fibronectin type III and laminin G	270						cell junction|proteinaceous extracellular matrix|synapse				pancreas(3)|skin(3)|ovary(1)	7	all_lung(31;0.000385)					ACTTAGATTTGGATATTTCCT	0.463													8	36					1.06961e-07	1.14794e-07	0.003080	1	0
EGFLAM	133584	broad.mit.edu	37	5	38406334	38406334	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:38406334C>T	uc003jlc.1	+	7	1143	c.819C>T	c.(817-819)TCC>TCT	p.S273S	EGFLAM_uc003jlb.1_Silent_p.S273S|EGFLAM_uc003jle.1_Silent_p.S39S|EGFLAM_uc003jlf.1_Intron	NM_152403	NP_689616	Q63HQ2	EGFLA_HUMAN	EGF-like, fibronectin type III and laminin G	273						cell junction|proteinaceous extracellular matrix|synapse				pancreas(3)|skin(3)|ovary(1)	7	all_lung(31;0.000385)					TGGATATTTCCTTTGAGGAGG	0.438													7	33					0	0	0.003080	0	0
EGFLAM	133584	broad.mit.edu	37	5	38464033	38464033	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:38464033C>T	uc003jlc.1	+	23	3323	c.2999C>T	c.(2998-3000)TCC>TTC	p.S1000F	EGFLAM_uc003jlb.1_Missense_Mutation_p.S992F|EGFLAM_uc003jle.1_Missense_Mutation_p.S758F|EGFLAM_uc003jlf.1_Missense_Mutation_p.S358F|EGFLAM_uc003jlg.1_Missense_Mutation_p.S135F|EGFLAM_uc003jlh.1_Missense_Mutation_p.S82F	NM_152403	NP_689616	Q63HQ2	EGFLA_HUMAN	EGF-like, fibronectin type III and laminin G	1000	Laminin G-like 3.					cell junction|proteinaceous extracellular matrix|synapse				pancreas(3)|skin(3)|ovary(1)	7	all_lung(31;0.000385)					TACCACATTTCCCTCGTGGAA	0.498													17	37					0	0	0.006122	0	0
C9	735	broad.mit.edu	37	5	39289047	39289047	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:39289047G>A	uc003jlv.3	-	10	1512	c.1423C>T	c.(1423-1425)CCT>TCT	p.P475S		NM_001737	NP_001728	P02748	CO9_HUMAN	complement component 9 precursor	475	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis|hemolysis by symbiont of host erythrocytes	extracellular region|membrane attack complex					0	all_lung(31;0.000197)	all_neural(839;7.57e-10)|Lung NSC(810;2.62e-08)|Ovarian(839;0.00384)|Breast(839;0.0184)|Myeloproliferative disorder(839;0.0511)	Epithelial(62;0.158)			TTATATATAGGAGACAGCTGA	0.299													10	17					0	0	0.008291	0	0
DAB2	1601	broad.mit.edu	37	5	39376948	39376948	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:39376948C>T	uc003jlx.2	-	12	2472	c.1941G>A	c.(1939-1941)GAG>GAA	p.E647E	DAB2_uc003jlw.2_Silent_p.E626E	NM_001343	NP_001334	P98082	DAB2_HUMAN	disabled homolog 2	647					cell proliferation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of protein binding|negative regulation of transcription, DNA-dependent|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein phosphorylation|positive regulation of transcription, DNA-dependent|positive regulation of Wnt receptor signaling pathway, planar cell polarity pathway	clathrin coated vesicle membrane|coated pit	protein C-terminus binding			kidney(2)|skin(1)	3	all_lung(31;0.000197)		Epithelial(62;0.137)			CATCCTTGATCTCTTTATCCC	0.552											OREG0016586	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	11	39					0	0	0.008291	0	0
DAB2	1601	broad.mit.edu	37	5	39381674	39381674	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:39381674G>A	uc003jlx.2	-	11	1917	c.1386C>T	c.(1384-1386)CCC>CCT	p.P462P	DAB2_uc003jlw.2_Silent_p.P441P	NM_001343	NP_001334	P98082	DAB2_HUMAN	disabled homolog 2	462					cell proliferation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of protein binding|negative regulation of transcription, DNA-dependent|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein phosphorylation|positive regulation of transcription, DNA-dependent|positive regulation of Wnt receptor signaling pathway, planar cell polarity pathway	clathrin coated vesicle membrane|coated pit	protein C-terminus binding			kidney(2)|skin(1)	3	all_lung(31;0.000197)		Epithelial(62;0.137)			GTTCTGAGACGGGAGGAGCAA	0.537													13	54					0	0	0.013537	0	0
DAB2	1601	broad.mit.edu	37	5	39390557	39390557	+	Missense_Mutation	SNP	T	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:39390557T>A	uc003jlx.2	-	5	982	c.451A>T	c.(451-453)ACC>TCC	p.T151S	DAB2_uc003jlw.2_Missense_Mutation_p.T151S	NM_001343	NP_001334	P98082	DAB2_HUMAN	disabled homolog 2	151	PID.				cell proliferation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of protein binding|negative regulation of transcription, DNA-dependent|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein phosphorylation|positive regulation of transcription, DNA-dependent|positive regulation of Wnt receptor signaling pathway, planar cell polarity pathway	clathrin coated vesicle membrane|coated pit	protein C-terminus binding			kidney(2)|skin(1)	3	all_lung(31;0.000197)		Epithelial(62;0.137)			TGTTGCCCGGTTTTTATGGCA	0.448													17	51					0	0	0.008871	0	0
C7	730	broad.mit.edu	37	5	40955533	40955534	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:40955533_40955534GG>AA	uc003jmh.2	+	10	1252_1253	c.1138_1139GG>AA	c.(1138-1140)GGA>AAA	p.G380K	C7_uc011cpn.1_RNA	NM_000587	NP_000578	P10643	CO7_HUMAN	complement component 7 precursor	380	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular region|membrane attack complex					0		Ovarian(839;0.0112)				CATCAGAGGGGGAGGTGCAGGC	0.421													29	73					0	0	0.004672	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41052574	41052574	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:41052574C>T	uc003jmj.3	-	12	1713	c.1223G>A	c.(1222-1224)AGG>AAG	p.R408K	HEATR7B2_uc003jmi.3_5'UTR	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	408	HEAT 5.						binding			ovary(6)|central_nervous_system(2)	8						TACCAGATTCCTGTTCAACGT	0.388													7	66					0	0	0.004482	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41058294	41058294	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:41058294G>A	uc003jmj.3	-	7	1117	c.627C>T	c.(625-627)ATC>ATT	p.I209I	HEATR7B2_uc003jmi.3_5'UTR	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	209							binding			ovary(6)|central_nervous_system(2)	8						GGGCCTTAACGATGCTCAAAG	0.512													7	12					0	0	0.003080	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41065475	41065475	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:41065475C>T	uc003jmj.3	-	4	809	c.319G>A	c.(319-321)GAA>AAA	p.E107K		NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	107							binding			ovary(6)|central_nervous_system(2)	8						ACAACGAATTCATCTGGTAGC	0.418													6	16					0	0	0.001168	0	0
GHR	2690	broad.mit.edu	37	5	42718801	42718801	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:42718801G>A	uc003jmt.2	+	10	1235	c.1192G>A	c.(1192-1194)GAT>AAT	p.D398N	GHR_uc011cpq.1_Missense_Mutation_p.D211N	NM_000163	NP_000154	P10912	GHR_HUMAN	growth hormone receptor precursor	398	Cytoplasmic (Potential).				2-oxoglutarate metabolic process|activation of JAK2 kinase activity|activation of MAPK activity|allantoin metabolic process|citrate metabolic process|creatine metabolic process|creatinine metabolic process|endocytosis|fatty acid metabolic process|growth hormone receptor signaling pathway|insulin-like growth factor receptor signaling pathway|isoleucine metabolic process|JAK-STAT cascade|multicellular organismal metabolic process|oxaloacetate metabolic process|positive regulation of multicellular organism growth|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|receptor internalization|response to cycloheximide|response to estradiol stimulus|succinate metabolic process|taurine metabolic process|valine metabolic process	cell surface|extracellular space|growth hormone receptor complex|integral to plasma membrane	growth factor binding|peptide hormone binding|proline-rich region binding|protein homodimerization activity|protein kinase binding			lung(4)|kidney(1)|skin(1)	6		Myeloproliferative disorder(839;0.00878)			Pegvisomant(DB00082)|Somatropin recombinant(DB00052)	TCTGGAGACTGATTTCAATGC	0.468													13	40					0	0	0.003163	0	0
HCN1	348980	broad.mit.edu	37	5	45396623	45396623	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:45396623C>T	uc003jok.2	-	4	1226	c.1201G>A	c.(1201-1203)GAT>AAT	p.D401N		NM_021072	NP_066550	O60741	HCN1_HUMAN	hyperpolarization activated cyclic	401	Cytoplasmic (Potential).					integral to membrane	cAMP binding|sodium channel activity|voltage-gated potassium channel activity			ovary(1)	1						CTCGAAGAATCCAGAGACTGG	0.463													4	15					0	0	0.001168	0	0
EMB	133418	broad.mit.edu	37	5	49701599	49701599	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:49701599G>A	uc003jom.2	-	5	809	c.560C>T	c.(559-561)CCT>CTT	p.P187L	EMB_uc010ivq.2_5'Flank|EMB_uc003jol.2_Missense_Mutation_p.P118L|EMB_uc011cpy.1_Missense_Mutation_p.P137L|EMB_uc010ivr.2_Missense_Mutation_p.P133L	NM_198449	NP_940851	Q6PCB8	EMB_HUMAN	embigin precursor	187	Extracellular (Potential).|Ig-like V-type 2.					integral to membrane					0	Lung SC(58;0.218)	Lung NSC(810;0.0795)				CCAATTTAAAGGAAAACAATT	0.328													14	23					0	0	0.004007	0	0
PARP8	79668	broad.mit.edu	37	5	50084408	50084408	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:50084408G>A	uc003jon.3	+	11	904	c.722G>A	c.(721-723)GGA>GAA	p.G241E	PARP8_uc011cpz.1_Missense_Mutation_p.G133E|PARP8_uc003joo.2_Missense_Mutation_p.G241E|PARP8_uc003jop.2_Missense_Mutation_p.G241E	NM_024615	NP_078891	Q8N3A8	PARP8_HUMAN	poly (ADP-ribose) polymerase family, member 8	241						intracellular	NAD+ ADP-ribosyltransferase activity			lung(3)|large_intestine(1)|ovary(1)	5		Lung NSC(810;0.0305)|Breast(144;0.222)				TTTGGATTGGGACATCAGCTG	0.343													5	16					0	0	0.001168	0	0
PARP8	79668	broad.mit.edu	37	5	50117146	50117146	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:50117146C>T	uc003jon.3	+	17	1950	c.1768C>T	c.(1768-1770)CCT>TCT	p.P590S	PARP8_uc011cpz.1_Missense_Mutation_p.P482S|PARP8_uc003joo.2_Missense_Mutation_p.P590S|PARP8_uc003jop.2_Intron	NM_024615	NP_078891	Q8N3A8	PARP8_HUMAN	poly (ADP-ribose) polymerase family, member 8	590						intracellular	NAD+ ADP-ribosyltransferase activity			lung(3)|large_intestine(1)|ovary(1)	5		Lung NSC(810;0.0305)|Breast(144;0.222)				TCCTAATGATCCTCAGATGTT	0.403													6	31					0	0	0.003080	0	0
ISL1	3670	broad.mit.edu	37	5	50687127	50687127	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:50687127G>A	uc003jor.2	+	5	1333	c.785G>A	c.(784-786)GGA>GAA	p.G262E		NM_002202	NP_002193	P61371	ISL1_HUMAN	islet-1	262	Gln-rich.				generation of precursor metabolites and energy|multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(2)|ovary(1)	3		Lung NSC(810;0.000845)|Breast(144;0.0411)				GGGATGACAGGAACTCCCATG	0.517													8	15					0	0	0.003080	0	0
ITGA2	3673	broad.mit.edu	37	5	52374689	52374689	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:52374689C>T	uc003joy.2	+	24	3056	c.2913C>T	c.(2911-2913)TTC>TTT	p.F971F	ITGA2_uc011cqa.1_RNA|ITGA2_uc011cqb.1_RNA|ITGA2_uc011cqc.1_Silent_p.F895F|ITGA2_uc011cqd.1_Intron|ITGA2_uc011cqe.1_RNA	NM_002203	NP_002194	P17301	ITA2_HUMAN	integrin alpha 2 precursor	971	Extracellular (Potential).				axon guidance|blood coagulation|cell-matrix adhesion|integrin-mediated signaling pathway|interspecies interaction between organisms|organ morphogenesis	integrin complex	collagen binding|identical protein binding|receptor activity			lung(1)	1		Lung NSC(810;3.11e-05)|Breast(144;0.014)|Prostate(461;0.0181)				GTCCAAAATTCATCTTCTCCC	0.373													7	12					0	0	0.008291	0	0
GZMA	3001	broad.mit.edu	37	5	54404085	54404085	+	Missense_Mutation	SNP	G	A	A	rs149445760	by1000genomes	TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:54404085G>A	uc003jpm.2	+	4	527	c.490G>A	c.(490-492)GAT>AAT	p.D164N		NM_006144	NP_006135	P12544	GRAA_HUMAN	granzyme A precursor	164	Peptidase S1.				cleavage of lamin|cytolysis|immune response|negative regulation of DNA binding|negative regulation of endodeoxyribonuclease activity|negative regulation of oxidoreductase activity|positive regulation of apoptosis	extracellular region|immunological synapse|nucleus	protein homodimerization activity|serine-type endopeptidase activity	p.D164N(1)		ovary(2)|pancreas(1)|skin(1)	4		Lung NSC(810;4.08e-05)|Breast(144;0.0433)|Prostate(74;0.183)				ATCTTGGTCCGATACTCTGAG	0.428													5	28					0	0	0.001984	0	0
GZMA	3001	broad.mit.edu	37	5	54404140	54404140	+	Missense_Mutation	SNP	G	A	A	rs142064253		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:54404140G>A	uc003jpm.2	+	4	582	c.545G>A	c.(544-546)CGA>CAA	p.R182Q		NM_006144	NP_006135	P12544	GRAA_HUMAN	granzyme A precursor	182	Peptidase S1.				cleavage of lamin|cytolysis|immune response|negative regulation of DNA binding|negative regulation of endodeoxyribonuclease activity|negative regulation of oxidoreductase activity|positive regulation of apoptosis	extracellular region|immunological synapse|nucleus	protein homodimerization activity|serine-type endopeptidase activity			ovary(2)|pancreas(1)|skin(1)	4		Lung NSC(810;4.08e-05)|Breast(144;0.0433)|Prostate(74;0.183)				TGCAATGATCGAAATCACTAT	0.428													5	22					0	0	0.000602	0	0
CDC20B	166979	broad.mit.edu	37	5	54420698	54420698	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:54420698G>A	uc003jpo.1	-	9	1323	c.1148C>T	c.(1147-1149)CCC>CTC	p.P383L	CDC20B_uc003jpn.1_Missense_Mutation_p.P383L|CDC20B_uc010ivu.1_Missense_Mutation_p.P383L|CDC20B_uc010ivv.1_3'UTR	NM_152623	NP_689836	Q86Y33	CD20B_HUMAN	CDC20 cell division cycle 20 homolog B isoform	383	WD 4.										0		Lung NSC(810;0.000744)|Breast(144;0.159)|Prostate(74;0.194)	LUSC - Lung squamous cell carcinoma(15;0.225)			TGGATCGTGGGGCCATATTGT	0.542													15	34					0	0	0.002450	0	0
DHX29	54505	broad.mit.edu	37	5	54579186	54579186	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:54579186G>A	uc003jpx.2	-	11	1930	c.1810C>T	c.(1810-1812)CAG>TAG	p.Q604*	DHX29_uc010ivw.2_RNA	NM_019030	NP_061903	Q7Z478	DHX29_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 29	604	Helicase ATP-binding.						ATP binding|ATP-dependent helicase activity|translation initiation factor activity			ovary(2)|central_nervous_system(1)|skin(1)	4		Lung NSC(810;4.08e-05)|Breast(144;0.0544)|Prostate(74;0.183)				TGTGGTACCTGAGTACTTTTA	0.418													24	43					0	0	0.014323	0	0
ANKRD55	79722	broad.mit.edu	37	5	55407155	55407155	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:55407155G>A	uc003jqu.2	-	10	1572	c.1420C>T	c.(1420-1422)CGA>TGA	p.R474*	ANKRD55_uc003jqt.2_Nonsense_Mutation_p.R186*	NM_024669	NP_078945	Q3KP44	ANR55_HUMAN	ankyrin repeat domain 55 isoform 1	473										skin(1)	1		Lung NSC(810;8.69e-05)|Prostate(74;0.00634)|Breast(144;0.0334)|Ovarian(174;0.223)				TGCTCACTTCGACTTTTCTGA	0.468													16	48					0	0	0.004007	0	0
HTR1A	3350	broad.mit.edu	37	5	63257112	63257112	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:63257112C>T	uc011cqt.1	-	1	435	c.435G>A	c.(433-435)GTG>GTA	p.V145V		NM_000524	NP_000515	P08908	5HT1A_HUMAN	5-hydroxytryptamine (serotonin) receptor 1A	145	Cytoplasmic (By similarity).				behavior|positive regulation of cell proliferation	integral to plasma membrane	serotonin receptor activity			ovary(2)|pancreas(2)	4		Lung NSC(810;3.55e-06)|Prostate(74;0.0352)|Ovarian(174;0.0545)|Breast(144;0.0575)|Colorectal(97;0.234)		Lung(70;0.105)	Alprenolol(DB00866)|Aripiprazole(DB01238)|Buspirone(DB00490)|Clozapine(DB00363)|Eletriptan(DB00216)|Ergoloid mesylate(DB01049)|Fluvoxamine(DB00176)|Lisuride(DB00589)|Methysergide(DB00247)|Mirtazapine(DB00370)|Pindolol(DB00960)|Propranolol(DB00571)|Quetiapine(DB01224)|Sertraline(DB01104)|Tegaserod(DB01079)|Trazodone(DB00656)|Venlafaxine(DB00285)|Ziprasidone(DB00246)	TCCTCTTGTTCACGTAGTCGA	0.642													8	31					0	0	0.004482	0	0
RGS7BP	401190	broad.mit.edu	37	5	63802466	63802466	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:63802466G>A	uc003jtj.2	+	1	15	c.15G>A	c.(13-15)CCG>CCA	p.P5P		NM_001029875	NP_001025046	Q6MZT1	R7BP_HUMAN	regulator of G-protein signaling 7 binding	5					negative regulation of signal transduction	cytoplasm|nucleus|plasma membrane					0		Lung NSC(810;0.000518)|Prostate(74;0.0435)|Ovarian(174;0.186)		Lung(70;0.147)		GTTCTGCACCGAATGGGCGCA	0.577													7	17					0	0	0.003080	0	0
RGS7BP	401190	broad.mit.edu	37	5	63890621	63890621	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:63890621C>T	uc003jtj.2	+	4	548	c.548C>T	c.(547-549)TCA>TTA	p.S183L	RGS7BP_uc011cqu.1_Missense_Mutation_p.S50L	NM_001029875	NP_001025046	Q6MZT1	R7BP_HUMAN	regulator of G-protein signaling 7 binding	183					negative regulation of signal transduction	cytoplasm|nucleus|plasma membrane					0		Lung NSC(810;0.000518)|Prostate(74;0.0435)|Ovarian(174;0.186)		Lung(70;0.147)		GACTCCTCATCATCCCCCGTA	0.498													13	40					0	0	0.001855	0	0
ADAMTS6	11174	broad.mit.edu	37	5	64483966	64483966	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:64483966C>T	uc003jtp.2	-	22	3601	c.2787G>A	c.(2785-2787)AAG>AAA	p.K929K	ADAMTS6_uc003jto.2_RNA|ADAMTS6_uc003jtq.2_RNA	NM_197941	NP_922932	Q9UKP5	ATS6_HUMAN	ADAM metallopeptidase with thrombospondin type 1	929	TSP type-1 3.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Lung NSC(167;2.44e-06)|Prostate(74;0.014)|Ovarian(174;0.0549)|Breast(144;0.111)|Colorectal(97;0.235)		Lung(70;0.00942)		AAGGTCCGATCTTCCTGATGC	0.532													21	99					0	0	0.012319	0	0
ADAMTS6	11174	broad.mit.edu	37	5	64521939	64521939	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:64521939C>T	uc003jtp.2	-	16	2855	c.2041G>A	c.(2041-2043)GAT>AAT	p.D681N	ADAMTS6_uc003jto.2_RNA|ADAMTS6_uc003jtq.2_RNA|ADAMTS6_uc003jtr.1_Missense_Mutation_p.D302N	NM_197941	NP_922932	Q9UKP5	ATS6_HUMAN	ADAM metallopeptidase with thrombospondin type 1	681					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Lung NSC(167;2.44e-06)|Prostate(74;0.014)|Ovarian(174;0.0549)|Breast(144;0.111)|Colorectal(97;0.235)		Lung(70;0.00942)		ATGCAGATATCCAGTGAATCC	0.403													3	13					0	0	0.009096	0	0
NAIP	4671	broad.mit.edu	37	5	70308365	70308365	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:70308365G>A	uc003kar.1	-	4	1096	c.378C>T	c.(376-378)TTC>TTT	p.F126F	NAIP_uc003kat.1_Intron|NAIP_uc011crs.1_Silent_p.F126F|NAIP_uc003kas.1_Intron	NM_004536	NP_004527	Q13075	BIRC1_HUMAN	NLR family, apoptosis inhibitory protein isoform	126	BIR 1.				anti-apoptosis|apoptosis|nervous system development	basolateral plasma membrane|cytoplasm	caspase inhibitor activity|metal ion binding|nucleoside-triphosphatase activity|nucleotide binding			central_nervous_system(1)	1		Lung NSC(167;4.15e-05)|Prostate(74;0.00996)|Ovarian(174;0.0448)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;3.04e-60)|Epithelial(20;7.09e-58)|all cancers(19;1.13e-53)|Lung(70;0.0174)		TGTTCAAAAGGAACCCACAAT	0.483													14	56					0	0	0.003163	0	0
MAP1B	4131	broad.mit.edu	37	5	71411610	71411610	+	Missense_Mutation	SNP	C	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:71411610C>G	uc003kbw.3	+	2	511	c.270C>G	c.(268-270)TTC>TTG	p.F90L	MAP1B_uc010iyw.1_Missense_Mutation_p.F90L|MAP1B_uc010iyx.1_5'UTR	NM_005909	NP_005900	P46821	MAP1B_HUMAN	microtubule-associated protein 1B	90						microtubule|microtubule associated complex	structural molecule activity			large_intestine(2)|ovary(1)|central_nervous_system(1)|pancreas(1)	5		Lung NSC(167;0.00202)|Ovarian(174;0.0175)|Prostate(461;0.142)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;7.99e-54)		CTGCAAGATTCTCTCCTGAAG	0.468													14	28					0	0	0.001855	0	0
MAP1B	4131	broad.mit.edu	37	5	71494054	71494054	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:71494054C>T	uc003kbw.3	+	5	5113	c.4872C>T	c.(4870-4872)TTC>TTT	p.F1624F	MAP1B_uc010iyw.1_Silent_p.F1641F|MAP1B_uc010iyx.1_Silent_p.F1498F|MAP1B_uc010iyy.1_Silent_p.F1498F	NM_005909	NP_005900	P46821	MAP1B_HUMAN	microtubule-associated protein 1B	1624						microtubule|microtubule associated complex	structural molecule activity			large_intestine(2)|ovary(1)|central_nervous_system(1)|pancreas(1)	5		Lung NSC(167;0.00202)|Ovarian(174;0.0175)|Prostate(461;0.142)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;7.99e-54)		CACCAGATTTCTCCCCTAAAA	0.448													14	45					0	0	0.002450	0	0
MRPS27	23107	broad.mit.edu	37	5	71516740	71516740	+	Missense_Mutation	SNP	G	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:71516740G>C	uc003kbz.3	-	11	1277	c.1241C>G	c.(1240-1242)GCC>GGC	p.A414G	MRPS27_uc003kca.3_Missense_Mutation_p.A358G|MRPS27_uc011cse.1_Missense_Mutation_p.A428G|MRPS27_uc011csd.1_Missense_Mutation_p.A195G	NM_015084	NP_055899	Q92552	RT27_HUMAN	mitochondrial ribosomal protein S27	414	Potential.					mitochondrion|ribosome					0		Lung NSC(167;0.00237)|Ovarian(174;0.0175)|Prostate(461;0.141)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;1.46e-53)		ACCCTATTAGGCAGATGCCTT	0.557													18	58					0	0	0.010504	0	0
ZNF366	167465	broad.mit.edu	37	5	71756184	71756184	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:71756184C>T	uc003kce.1	-	2	1326	c.1140G>A	c.(1138-1140)CTG>CTA	p.L380L		NM_152625	NP_689838	Q8N895	ZN366_HUMAN	zinc finger protein 366	380	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)|skin(1)	2		Lung NSC(167;0.0247)|Ovarian(174;0.0908)|Prostate(461;0.155)		OV - Ovarian serous cystadenocarcinoma(47;2.51e-53)		GGTGTCTCTTCAGCTGGGCCA	0.627													8	23					0	0	0.006214	0	0
FCHO2	115548	broad.mit.edu	37	5	72333013	72333013	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:72333013C>T	uc003kcl.2	+	10	1001	c.885C>T	c.(883-885)ATC>ATT	p.I295I	FCHO2_uc011csl.1_Silent_p.I262I|FCHO2_uc011csk.1_Silent_p.I295I|FCHO2_uc011csm.1_Silent_p.I101I	NM_138782	NP_620137	Q0JRZ9	FCHO2_HUMAN	FCH domain only 2 isoform a	295										ovary(1)	1		Lung NSC(167;0.0465)|Ovarian(174;0.0908)|Prostate(461;0.165)		OV - Ovarian serous cystadenocarcinoma(47;4.6e-53)		TGCCAGGAATCATTAAAAAGG	0.249													5	13					0	0	0.001984	0	0
SV2C	22987	broad.mit.edu	37	5	75594650	75594650	+	Missense_Mutation	SNP	T	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:75594650T>A	uc003kei.1	+	10	1668	c.1534T>A	c.(1534-1536)TTC>ATC	p.F512I		NM_014979	NP_055794	Q496J9	SV2C_HUMAN	synaptic vesicle glycoprotein 2C	512	Extracellular (Potential).				neurotransmitter transport	cell junction|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			skin(1)	1		all_lung(232;0.007)|Lung NSC(167;0.0148)|Ovarian(174;0.0798)|Prostate(461;0.184)		OV - Ovarian serous cystadenocarcinoma(47;1.16e-50)|all cancers(79;7.25e-40)		ATCTGTAACTTTCAAAGACTC	0.368													19	51					0	0	0.014323	0	0
SV2C	22987	broad.mit.edu	37	5	75596660	75596660	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:75596660G>A	uc003kei.1	+	11	1877	c.1743G>A	c.(1741-1743)TGG>TGA	p.W581*		NM_014979	NP_055794	Q496J9	SV2C_HUMAN	synaptic vesicle glycoprotein 2C	581	Helical; (Potential).				neurotransmitter transport	cell junction|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			skin(1)	1		all_lung(232;0.007)|Lung NSC(167;0.0148)|Ovarian(174;0.0798)|Prostate(461;0.184)		OV - Ovarian serous cystadenocarcinoma(47;1.16e-50)|all cancers(79;7.25e-40)		GTGCCTACTGGATTTATTTTG	0.403													23	56					0	0	0.012319	0	0
SV2C	22987	broad.mit.edu	37	5	75596681	75596681	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:75596681G>A	uc003kei.1	+	11	1898	c.1764G>A	c.(1762-1764)CTG>CTA	p.L588L		NM_014979	NP_055794	Q496J9	SV2C_HUMAN	synaptic vesicle glycoprotein 2C	588	Helical; (Potential).				neurotransmitter transport	cell junction|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			skin(1)	1		all_lung(232;0.007)|Lung NSC(167;0.0148)|Ovarian(174;0.0798)|Prostate(461;0.184)		OV - Ovarian serous cystadenocarcinoma(47;1.16e-50)|all cancers(79;7.25e-40)		TCAACTTTCTGGGGACATTGG	0.408													27	42					0	0	0.004656	0	0
F2RL2	2151	broad.mit.edu	37	5	75914292	75914292	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:75914292C>T	uc003kem.2	-	2	425	c.240G>A	c.(238-240)GTG>GTA	p.V80V	IQGAP2_uc003kek.2_Intron|IQGAP2_uc010izv.2_Intron|IQGAP2_uc011csv.1_Intron|IQGAP2_uc003kel.2_Intron|F2RL2_uc011csw.1_Silent_p.V58V	NM_004101	NP_004092	O00254	PAR3_HUMAN	coagulation factor II (thrombin) receptor-like 2	80	Extracellular (Potential).				platelet activation	extracellular region|integral to plasma membrane	phosphatidylinositol phospholipase C activity|protein binding|thrombin receptor activity			skin(2)|ovary(1)	3		all_lung(232;0.000462)|Lung NSC(167;0.00124)|Prostate(461;0.00955)|Ovarian(174;0.0129)		all cancers(79;4.43e-43)		TAGCATTTTTCACATGGAGAT	0.473													26	96					0	0	0.007291	0	0
F2R	2149	broad.mit.edu	37	5	76028198	76028198	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:76028198G>A	uc003ken.3	+	2	413	c.148G>A	c.(148-150)GAT>AAT	p.D50N		NM_001992	NP_001983	P25116	PAR1_HUMAN	coagulation factor II receptor precursor	50	Extracellular (Potential).				activation of caspase activity|anatomical structure morphogenesis|connective tissue replacement involved in inflammatory response wound healing|negative regulation of cell proliferation|platelet activation|positive regulation of blood coagulation|positive regulation of cell migration|positive regulation of collagen biosynthetic process|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of JAK-STAT cascade|positive regulation of MAPKKK cascade|positive regulation of release of sequestered calcium ion into cytosol|positive regulation of transcription, DNA-dependent|STAT protein import into nucleus|tyrosine phosphorylation of STAT protein	caveola|extracellular region|Golgi apparatus|integral to plasma membrane|platelet dense tubular network	receptor binding|thrombin receptor activity			ovary(3)	3		all_lung(232;0.000414)|Lung NSC(167;0.0011)|Prostate(461;0.00955)|Ovarian(174;0.0129)		all cancers(79;4.43e-43)	Streptokinase(DB00086)	GAACCCCAATGATAAATATGA	0.328													6	43					0	0	0.001984	0	0
F2RL1	2150	broad.mit.edu	37	5	76128626	76128626	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:76128626C>T	uc003keo.2	+	2	369	c.194C>T	c.(193-195)TCT>TTT	p.S65F		NM_005242	NP_005233	P55085	PAR2_HUMAN	coagulation factor II (thrombin) receptor-like 1	65	Extracellular (Potential).				blood coagulation|elevation of cytosolic calcium ion concentration|positive regulation of leukocyte chemotaxis|positive regulation of positive chemotaxis|regulation of blood coagulation	Golgi apparatus|integral to plasma membrane	receptor binding|thrombin receptor activity			central_nervous_system(1)	1		all_lung(232;0.000414)|Lung NSC(167;0.0011)|Ovarian(174;0.0129)|Prostate(461;0.11)		OV - Ovarian serous cystadenocarcinoma(54;7.7e-51)|Epithelial(54;2.77e-45)|all cancers(79;3.47e-41)		GATGAGTTTTCTGCATCTGTC	0.458													75	249					0	0	0.014410	0	0
PDE8B	8622	broad.mit.edu	37	5	76714114	76714114	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:76714114G>A	uc003kfa.2	+	18	2017	c.1972G>A	c.(1972-1974)GAT>AAT	p.D658N	PDE8B_uc003kfb.2_Missense_Mutation_p.D638N|PDE8B_uc003kfc.2_Missense_Mutation_p.D603N|PDE8B_uc003kfd.2_Missense_Mutation_p.D611N|PDE8B_uc003kfe.2_Missense_Mutation_p.D561N	NM_003719	NP_003710	O95263	PDE8B_HUMAN	phosphodiesterase 8B isoform 1	658	Catalytic (By similarity).				cyclic nucleotide metabolic process|regulation of transcription, DNA-dependent	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding|two-component response regulator activity				0		all_lung(232;0.00043)|Lung NSC(167;0.00114)|Ovarian(174;0.0107)|Prostate(461;0.0605)		OV - Ovarian serous cystadenocarcinoma(54;2.21e-49)|Epithelial(54;5.82e-43)|all cancers(79;4.06e-38)		CCATGACGTGGATCACCCGGG	0.562													61	261					0	0	0.014410	0	0
AP3B1	8546	broad.mit.edu	37	5	77423960	77423960	+	Missense_Mutation	SNP	G	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:77423960G>T	uc003kfj.2	-	17	1987	c.1862C>A	c.(1861-1863)ACC>AAC	p.T621N		NM_003664	NP_003655	O00203	AP3B1_HUMAN	adaptor-related protein complex 3, beta 1	621					endocytosis|melanosome organization	clathrin coated vesicle membrane|Golgi apparatus|membrane coat	protein phosphatase binding|protein transporter activity			central_nervous_system(1)	1		all_lung(232;0.000397)|Lung NSC(167;0.00106)|Ovarian(174;0.0105)|Prostate(461;0.215)		OV - Ovarian serous cystadenocarcinoma(54;8.23e-47)|Epithelial(54;2.74e-41)|all cancers(79;4.8e-36)		ATGAGATAAGGTGCCAAGCTG	0.363									Hermansky-Pudlak_syndrome				7	11					1.06961e-07	1.14794e-07	0.003080	1	0
CMYA5	202333	broad.mit.edu	37	5	79026948	79026948	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:79026948G>A	uc003kgc.2	+	2	2432	c.2360G>A	c.(2359-2361)GGA>GAA	p.G787E		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	787						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		GAGGACCTAGGAAGTGAACGT	0.468													13	27					0	0	0.001855	0	0
CMYA5	202333	broad.mit.edu	37	5	79033450	79033450	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:79033450G>A	uc003kgc.2	+	2	8934	c.8862G>A	c.(8860-8862)TTG>TTA	p.L2954L		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	2954						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		GTGAGATATTGAATATTCATG	0.368													6	14					0	0	0.001168	0	0
THBS4	7060	broad.mit.edu	37	5	79363879	79363879	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:79363879C>T	uc003kgh.2	+	11	1601	c.1278C>T	c.(1276-1278)AAC>AAT	p.N426N	uc003kgi.3_Intron	NM_003248	NP_003239	P35443	TSP4_HUMAN	thrombospondin 4 precursor	426	EGF-like 4.				endothelial cell-cell adhesion|myoblast migration|negative regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of neutrophil chemotaxis|positive regulation of peptidyl-tyrosine phosphorylation	basement membrane|extracellular space	calcium ion binding|heparin binding|integrin binding|structural molecule activity				0		Lung NSC(167;0.00328)|all_lung(232;0.00355)|Ovarian(174;0.0261)		OV - Ovarian serous cystadenocarcinoma(54;6.3e-45)|Epithelial(54;1.77e-39)|all cancers(79;3.2e-34)		ACTGCAGAAACCCAGAGCTGA	0.483													8	52					0	0	0.004482	0	0
THBS4	7060	broad.mit.edu	37	5	79375868	79375868	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:79375868C>T	uc003kgh.2	+	21	2975	c.2652C>T	c.(2650-2652)TTC>TTT	p.F884F	uc003kgi.3_Intron	NM_003248	NP_003239	P35443	TSP4_HUMAN	thrombospondin 4 precursor	884	TSP C-terminal.				endothelial cell-cell adhesion|myoblast migration|negative regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of neutrophil chemotaxis|positive regulation of peptidyl-tyrosine phosphorylation	basement membrane|extracellular space	calcium ion binding|heparin binding|integrin binding|structural molecule activity				0		Lung NSC(167;0.00328)|all_lung(232;0.00355)|Ovarian(174;0.0261)		OV - Ovarian serous cystadenocarcinoma(54;6.3e-45)|Epithelial(54;1.77e-39)|all cancers(79;3.2e-34)		ACCGCTGGTTCCTACAGCACA	0.587													8	7					0	0	0.004482	0	0
LOC644936	644936	broad.mit.edu	37	5	79595887	79595887	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:79595887C>T	uc010jai.2	-	1	411	c.270G>A	c.(268-270)CAG>CAA	p.Q90Q		NR_004845				Homo sapiens cytoplasmic beta-actin pseudogene, mRNA (cDNA clone IMAGE:30378151).												0						TGGTGATGACCTGGCCATTGG	0.552													3	10					0	0	0.004672	0	0
LOC441089	441089	broad.mit.edu	37	5	79647680	79647680	+	RNA	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:79647680G>A	uc010jaj.1	-	1		c.106C>T				NR_003665				Homo sapiens CRSP8 pseudogene (LOC441089), non-coding RNA.												0						TCAGGCAGTCGAACAACCTGC	0.582													5	19					0	0	0.000602	0	0
MSH3	4437	broad.mit.edu	37	5	80064787	80064787	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:80064787C>T	uc003kgz.2	+	15	2471	c.2218C>T	c.(2218-2220)CCT>TCT	p.P740S		NM_002439	NP_002430	P20585	MSH3_HUMAN	mutS homolog 3	740					maintenance of DNA repeat elements|meiotic mismatch repair|negative regulation of DNA recombination|positive regulation of helicase activity|reciprocal meiotic recombination|somatic recombination of immunoglobulin gene segments	MutSbeta complex|nuclear chromosome	ATP binding|DNA-dependent ATPase activity|double-strand/single-strand DNA junction binding|enzyme binding|loop DNA binding|Y-form DNA binding			lung(2)|ovary(1)|breast(1)	4		Lung NSC(167;0.00479)|all_lung(232;0.00507)|Ovarian(174;0.0261)|Breast(144;0.244)		OV - Ovarian serous cystadenocarcinoma(54;2.38e-45)|Epithelial(54;1.58e-38)|all cancers(79;4.93e-33)		ACTAAAAAATCCTTCTGCACA	0.313								MMR					5	32					0	0	0.001168	0	0
RASGRF2	5924	broad.mit.edu	37	5	80382676	80382676	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:80382676G>A	uc003kha.1	+	9	1294	c.1294G>A	c.(1294-1296)GAC>AAC	p.D432N	RASGRF2_uc011ctn.1_RNA|RASGRF2_uc003khb.1_Missense_Mutation_p.D260N	NM_006909	NP_008840	O14827	RGRF2_HUMAN	Ras protein-specific guanine	432					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol|endoplasmic reticulum membrane|plasma membrane	protein binding|Rho guanyl-nucleotide exchange factor activity			breast(5)|ovary(3)|large_intestine(2)|central_nervous_system(1)|skin(1)	12		Lung NSC(167;0.00498)|all_lung(232;0.00531)|Ovarian(174;0.0357)		OV - Ovarian serous cystadenocarcinoma(54;4.22e-42)|Epithelial(54;4.04e-35)|all cancers(79;2.52e-29)		TGAAGTCAGCGACACTGAAAA	0.468													5	23					0	0	0.000602	0	0
ACOT12	134526	broad.mit.edu	37	5	80643737	80643737	+	Missense_Mutation	SNP	T	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:80643737T>A	uc003khl.3	-	6	564	c.509A>T	c.(508-510)GAT>GTT	p.D170V	RNU5E_uc011cto.1_Intron	NM_130767	NP_570123	Q8WYK0	ACO12_HUMAN	acyl-CoA thioesterase 12	170	Acyl coenzyme A hydrolase 2.				acyl-CoA metabolic process|fatty acid metabolic process	cytosol	acetyl-CoA hydrolase activity|carboxylesterase activity			ovary(1)|kidney(1)	2		Lung NSC(167;0.0176)|all_lung(232;0.0205)|Ovarian(174;0.135)		OV - Ovarian serous cystadenocarcinoma(54;1.37e-45)|Epithelial(54;1.25e-39)|all cancers(79;5.01e-34)		TTCCTCTTCATCAAAAATGAG	0.498													35	103					0	0	0.003271	0	0
VCAN	1462	broad.mit.edu	37	5	82832870	82832870	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:82832870G>A	uc003kii.3	+	8	4404	c.4048G>A	c.(4048-4050)GAA>AAA	p.E1350K	VCAN_uc003kij.3_Missense_Mutation_p.E363K|VCAN_uc010jau.2_Intron|VCAN_uc003kik.3_Intron|VCAN_uc003kil.3_Missense_Mutation_p.E14K	NM_004385	NP_004376	P13611	CSPG2_HUMAN	versican isoform 1 precursor	1350	GAG-beta.				cell adhesion|cell recognition|glial cell migration	extracellular space|proteinaceous extracellular matrix	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(7)|skin(6)|lung(2)|central_nervous_system(1)	16		Lung NSC(167;0.0216)|all_lung(232;0.0251)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;2.47e-41)|Epithelial(54;2.51e-34)|all cancers(79;5.19e-29)		AATAGATTCAGAATCTAAAGA	0.338													4	26					0	0	0.009096	0	0
VCAN	1462	broad.mit.edu	37	5	82833764	82833764	+	Missense_Mutation	SNP	G	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:82833764G>T	uc003kii.3	+	8	5298	c.4942G>T	c.(4942-4944)GAT>TAT	p.D1648Y	VCAN_uc003kij.3_Missense_Mutation_p.D661Y|VCAN_uc010jau.2_Intron|VCAN_uc003kik.3_Intron|VCAN_uc003kil.3_Missense_Mutation_p.D312Y	NM_004385	NP_004376	P13611	CSPG2_HUMAN	versican isoform 1 precursor	1648	GAG-beta.				cell adhesion|cell recognition|glial cell migration	extracellular space|proteinaceous extracellular matrix	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(7)|skin(6)|lung(2)|central_nervous_system(1)	16		Lung NSC(167;0.0216)|all_lung(232;0.0251)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;2.47e-41)|Epithelial(54;2.51e-34)|all cancers(79;5.19e-29)		AGCAGAAGAAGATGAAGATAC	0.398													11	20					3.86212e-05	4.13028e-05	0.008291	1	0
VCAN	1462	broad.mit.edu	37	5	82850796	82850796	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:82850796G>A	uc003kii.3	+	12	10030	c.9674G>A	c.(9673-9675)TGG>TAG	p.W3225*	VCAN_uc003kij.3_Nonsense_Mutation_p.W2238*|VCAN_uc010jau.2_Nonsense_Mutation_p.W1471*|VCAN_uc003kik.3_Nonsense_Mutation_p.W484*|VCAN_uc003kil.3_Nonsense_Mutation_p.W1889*	NM_004385	NP_004376	P13611	CSPG2_HUMAN	versican isoform 1 precursor	3225	C-type lectin.				cell adhesion|cell recognition|glial cell migration	extracellular space|proteinaceous extracellular matrix	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(7)|skin(6)|lung(2)|central_nervous_system(1)	16		Lung NSC(167;0.0216)|all_lung(232;0.0251)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;2.47e-41)|Epithelial(54;2.51e-34)|all cancers(79;5.19e-29)		GATTATCAGTGGATAGGCCTC	0.388													8	30					0	0	0.008291	0	0
HAPLN1	1404	broad.mit.edu	37	5	82940236	82940236	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:82940236A>G	uc003kim.2	-	3	792	c.721T>C	c.(721-723)TGG>CGG	p.W241R	HAPLN1_uc003kin.2_Missense_Mutation_p.W241R	NM_001884	NP_001875	P10915	HPLN1_HUMAN	hyaluronan and proteoglycan link protein 1	241	Link 1.				cell adhesion	proteinaceous extracellular matrix	hyaluronic acid binding			large_intestine(3)|ovary(1)|skin(1)	5		Lung NSC(167;0.0484)|all_lung(232;0.0522)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;7.82e-42)|Epithelial(54;5.88e-35)|all cancers(79;1.14e-29)		TCTTTATCCCAAAATCCGTAG	0.448													8	31					0	0	0.004482	0	0
NBPF22P	285622	broad.mit.edu	37	5	85578703	85578703	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:85578703G>A	uc003kiq.2	+	1	442	c.180G>A	c.(178-180)GAG>GAA	p.E60E		NR_003719				SubName: Full=Putative uncharacterized protein NBPF22P;												0						ACCTCAAAGAGAAATTCCTTA	0.453													11	17					0	0	0.008291	0	0
GPR98	84059	broad.mit.edu	37	5	90001301	90001301	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:90001301G>A	uc003kju.2	+	37	8567	c.8471G>A	c.(8470-8472)GGA>GAA	p.G2824E	GPR98_uc003kjt.2_Missense_Mutation_p.G530E|GPR98_uc003kjv.2_Missense_Mutation_p.G424E	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	2824	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		GAACCACATGGAGTTTTAAAT	0.418													20	76					0	0	0.010504	0	0
GPR98	84059	broad.mit.edu	37	5	90136463	90136463	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:90136463G>A	uc003kju.2	+	78	16776	c.16680G>A	c.(16678-16680)GTG>GTA	p.V5560V	GPR98_uc003kjt.2_Silent_p.V3266V|GPR98_uc003kjw.2_Silent_p.V1221V	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	5560	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		AGGATTTTGTGATAACTGAAG	0.398													11	79					0	0	0.013537	0	0
POU5F2	134187	broad.mit.edu	37	5	93077220	93077220	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:93077220C>T	uc003kkl.1	-	1	90	c.50G>A	c.(49-51)GGT>GAT	p.G17D	FAM172A_uc010jbd.2_Intron|FAM172A_uc011cuf.1_Intron|FAM172A_uc011cug.1_Intron|FAM172A_uc011cuh.1_Intron|FAM172A_uc011cui.1_Intron|FAM172A_uc011cuj.1_Intron	NM_153216	NP_694948	Q8N7G0	PO5F2_HUMAN	POU domain class 5, transcription factor 2	17						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0		all_cancers(142;3.87e-05)|all_epithelial(76;4.59e-07)|all_lung(232;0.0126)|Lung NSC(167;0.0155)|Ovarian(174;0.0218)|Prostate(281;0.173)|Colorectal(57;0.19)		UCEC - Uterine corpus endometrioid carcinoma (5;0.0415)|all cancers(79;2.03e-19)		GCCGCCCCCACCACTGCCTGG	0.687													3	7					0	0	0.004672	0	0
FAM81B	153643	broad.mit.edu	37	5	94749851	94749851	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:94749851A>G	uc003kla.1	+	4	540	c.494A>G	c.(493-495)CAG>CGG	p.Q165R	FAM81B_uc010jbe.1_5'UTR	NM_152548	NP_689761	Q96LP2	FA81B_HUMAN	hypothetical protein LOC153643	165	Potential.									ovary(1)|skin(1)	2		all_cancers(142;1.1e-06)|all_epithelial(76;1.48e-09)|all_lung(232;0.000696)|Lung NSC(167;0.000947)|Ovarian(225;0.00473)		all cancers(79;1.04e-16)		AGCCACATCCAGACCATCACC	0.448													6	26					0	0	0.004482	0	0
PCSK1	5122	broad.mit.edu	37	5	95733144	95733144	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:95733144C>T	uc003kls.1	-	12	1824	c.1618G>A	c.(1618-1620)GAA>AAA	p.E540K	PCSK1_uc010jbi.1_Missense_Mutation_p.E230K	NM_000439	NP_000430	P29120	NEC1_HUMAN	proprotein convertase subtilisin/kexin type 1	540					cell-cell signaling|cellular nitrogen compound metabolic process|energy reserve metabolic process|hormone biosynthetic process|peptide biosynthetic process|peptide hormone processing|regulation of insulin secretion	extracellular space|stored secretory granule|transport vesicle	serine-type endopeptidase activity			ovary(2)	2		all_cancers(142;2.67e-06)|all_epithelial(76;6.92e-09)|all_lung(232;0.00307)|Lung NSC(167;0.00452)|Ovarian(225;0.0112)|Colorectal(57;0.0341)|Breast(839;0.244)		all cancers(79;3.44e-16)	Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	GTATCCCGTTCTCTTTCAGCC	0.398													4	19					0	0	0.000602	0	0
PCSK1	5122	broad.mit.edu	37	5	95734703	95734703	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:95734703G>A	uc003kls.1	-	11	1674	c.1468C>T	c.(1468-1470)CCA>TCA	p.P490S	PCSK1_uc010jbi.1_Missense_Mutation_p.P180S	NM_000439	NP_000430	P29120	NEC1_HUMAN	proprotein convertase subtilisin/kexin type 1	490					cell-cell signaling|cellular nitrogen compound metabolic process|energy reserve metabolic process|hormone biosynthetic process|peptide biosynthetic process|peptide hormone processing|regulation of insulin secretion	extracellular space|stored secretory granule|transport vesicle	serine-type endopeptidase activity			ovary(2)	2		all_cancers(142;2.67e-06)|all_epithelial(76;6.92e-09)|all_lung(232;0.00307)|Lung NSC(167;0.00452)|Ovarian(225;0.0112)|Colorectal(57;0.0341)|Breast(839;0.244)		all cancers(79;3.44e-16)	Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	GCTCTTGTTGGAATTTCAATG	0.358													5	10					0	0	0.001168	0	0
ST8SIA4	7903	broad.mit.edu	37	5	100222183	100222183	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:100222183C>T	uc003knk.2	-	3	695	c.367G>A	c.(367-369)GAT>AAT	p.D123N	ST8SIA4_uc003knl.2_Missense_Mutation_p.D123N	NM_005668	NP_005659	Q92187	SIA8D_HUMAN	ST8 alpha-N-acetyl-neuraminide	123	Lumenal (Potential).				axon guidance|N-glycan processing	integral to Golgi membrane	alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity			large_intestine(1)|central_nervous_system(1)	2		all_cancers(142;1.5e-07)|all_epithelial(76;1.43e-10)|Prostate(80;0.000644)|Lung NSC(167;0.0059)|all_lung(232;0.00914)|Ovarian(225;0.024)|Colorectal(57;0.09)|Breast(839;0.203)		COAD - Colon adenocarcinoma(37;0.00402)		CTATGTAGATCATGAGAAATG	0.443													19	54					0	0	0.012319	0	0
SLCO4C1	353189	broad.mit.edu	37	5	101576466	101576466	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:101576466C>T	uc003knm.2	-	11	2119	c.1832G>A	c.(1831-1833)CGG>CAG	p.R611Q		NM_180991	NP_851322	Q6ZQN7	SO4C1_HUMAN	solute carrier organic anion transporter family,	611	Cytoplasmic (Potential).				cell differentiation|multicellular organismal development|sodium-independent organic anion transport|spermatogenesis	basolateral plasma membrane|integral to membrane	sodium-independent organic anion transmembrane transporter activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)|pancreas(1)	4		all_cancers(142;1.86e-08)|all_epithelial(76;5.24e-12)|Prostate(80;0.00124)|Colorectal(57;0.00332)|Ovarian(225;0.024)|Lung NSC(167;0.0402)|all_lung(232;0.0486)		Epithelial(69;4.07e-14)|COAD - Colon adenocarcinoma(37;0.00986)		GGCTAGGGACCGTTGTCTGTG	0.338													24	104					0	0	0.007291	0	0
SLCO6A1	133482	broad.mit.edu	37	5	101755635	101755635	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:101755635C>T	uc003knn.2	-	8	1539	c.1367G>A	c.(1366-1368)AGA>AAA	p.R456K	SLCO6A1_uc003kno.2_Intron|SLCO6A1_uc003knp.2_Missense_Mutation_p.R456K|SLCO6A1_uc003knq.2_Missense_Mutation_p.R394K	NM_173488	NP_775759	Q86UG4	SO6A1_HUMAN	solute carrier organic anion transporter family,	456	Helical; Name=9; (Potential).					integral to membrane|plasma membrane	transporter activity			ovary(3)|skin(3)|central_nervous_system(1)	7		all_cancers(142;8e-09)|all_epithelial(76;2.83e-12)|Prostate(80;0.00125)|Colorectal(57;0.00342)|Ovarian(225;0.024)|Lung NSC(167;0.0259)|all_lung(232;0.0323)		Epithelial(69;1.47e-15)|COAD - Colon adenocarcinoma(37;0.0113)		CATTATAAATCTCATAAGGGC	0.358													13	66					0	0	0.013537	0	0
SLCO6A1	133482	broad.mit.edu	37	5	101834348	101834348	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:101834348C>T	uc003knn.2	-	1	373	c.201G>A	c.(199-201)AGG>AGA	p.R67R	SLCO6A1_uc003kno.2_Silent_p.R67R|SLCO6A1_uc003knp.2_Silent_p.R67R|SLCO6A1_uc003knq.2_Silent_p.R67R	NM_173488	NP_775759	Q86UG4	SO6A1_HUMAN	solute carrier organic anion transporter family,	67	Cytoplasmic (Potential).					integral to membrane|plasma membrane	transporter activity			ovary(3)|skin(3)|central_nervous_system(1)	7		all_cancers(142;8e-09)|all_epithelial(76;2.83e-12)|Prostate(80;0.00125)|Colorectal(57;0.00342)|Ovarian(225;0.024)|Lung NSC(167;0.0259)|all_lung(232;0.0323)		Epithelial(69;1.47e-15)|COAD - Colon adenocarcinoma(37;0.0113)		TGGCTTTTTTCCTTTTTCGGA	0.537													27	73					0	0	0.008361	0	0
SLCO6A1	133482	broad.mit.edu	37	5	101834439	101834439	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:101834439C>T	uc003knn.2	-	1	282	c.110G>A	c.(109-111)GGA>GAA	p.G37E	SLCO6A1_uc003kno.2_Missense_Mutation_p.G37E|SLCO6A1_uc003knp.2_Missense_Mutation_p.G37E|SLCO6A1_uc003knq.2_Missense_Mutation_p.G37E	NM_173488	NP_775759	Q86UG4	SO6A1_HUMAN	solute carrier organic anion transporter family,	37	Cytoplasmic (Potential).					integral to membrane|plasma membrane	transporter activity			ovary(3)|skin(3)|central_nervous_system(1)	7		all_cancers(142;8e-09)|all_epithelial(76;2.83e-12)|Prostate(80;0.00125)|Colorectal(57;0.00342)|Ovarian(225;0.024)|Lung NSC(167;0.0259)|all_lung(232;0.0323)		Epithelial(69;1.47e-15)|COAD - Colon adenocarcinoma(37;0.0113)		CTTCGGGGTTCCCTTGGCCCT	0.607													27	102					0	0	0.008361	0	0
CAMK4	814	broad.mit.edu	37	5	110820078	110820078	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:110820078G>A	uc011cvj.1	+	12	1435	c.1336G>A	c.(1336-1338)GAG>AAG	p.E446K	CAMK4_uc003kpf.2_Missense_Mutation_p.E446K|CAMK4_uc010jbv.2_Missense_Mutation_p.E249K|CAMK4_uc003kpg.2_Missense_Mutation_p.E137K	NM_001744	NP_001735	Q16566	KCC4_HUMAN	calcium/calmodulin-dependent protein kinase IV	446					activation of phospholipase C activity|nerve growth factor receptor signaling pathway|synaptic transmission	cytosol|nucleoplasm	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			ovary(3)|lung(2)	5		all_cancers(142;1.49e-05)|all_epithelial(76;1.82e-07)|Prostate(80;0.00964)|all_lung(232;0.0181)|Lung NSC(167;0.0298)|Ovarian(225;0.0446)|Colorectal(57;0.0478)|Breast(839;0.244)		OV - Ovarian serous cystadenocarcinoma(64;3.79e-08)|Epithelial(69;5.29e-08)|all cancers(49;1.1e-05)|COAD - Colon adenocarcinoma(37;0.109)		GACTGTGGAGGAGGCAGCAGC	0.552													5	23					0	0	0.000602	0	0
STARD4	134429	broad.mit.edu	37	5	110835597	110835597	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:110835597C>T	uc003kph.1	-	6	689	c.605G>A	c.(604-606)CGA>CAA	p.R202Q	STARD4_uc010jbw.1_Missense_Mutation_p.R104Q|STARD4_uc010jbx.1_Missense_Mutation_p.R104Q|STARD4_uc003kpi.1_RNA	NM_139164	NP_631903	Q96DR4	STAR4_HUMAN	StAR-related lipid transfer (START) domain	202	START.				lipid transport		lipid binding			ovary(1)	1		all_cancers(142;0.00259)|all_epithelial(76;8.32e-05)|Prostate(80;0.0115)|Colorectal(10;0.0959)|Ovarian(225;0.156)|all_lung(232;0.18)|Lung NSC(167;0.248)		OV - Ovarian serous cystadenocarcinoma(64;4.91e-09)|Epithelial(69;1.39e-08)|all cancers(49;2.34e-06)|COAD - Colon adenocarcinoma(37;0.049)|Colorectal(14;0.138)		TAAAGCTTTTCGTAAATCACC	0.403													8	31					0	0	0.003080	0	0
YTHDC2	64848	broad.mit.edu	37	5	112868723	112868723	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:112868723C>T	uc003kqn.2	+	5	1006	c.823C>T	c.(823-825)CAG>TAG	p.Q275*	YTHDC2_uc010jce.1_Nonsense_Mutation_p.Q275*|YTHDC2_uc010jcf.1_5'UTR	NM_022828	NP_073739	Q9H6S0	YTDC2_HUMAN	YTH domain containing 2	275	Helicase ATP-binding.						ATP binding|ATP-dependent helicase activity|nucleic acid binding			skin(2)|central_nervous_system(1)	3		all_cancers(142;7.69e-05)|all_epithelial(76;6.42e-07)|Colorectal(10;0.00278)|Prostate(80;0.00955)|Ovarian(225;0.0444)|Lung NSC(810;0.143)|all_lung(232;0.163)|Breast(839;0.244)		OV - Ovarian serous cystadenocarcinoma(64;7.2e-08)|Epithelial(69;8.83e-08)|all cancers(49;6.9e-06)|COAD - Colon adenocarcinoma(37;0.0458)|Colorectal(14;0.0594)		AATTGGTTATCAGATCCGATT	0.383													13	16					0	0	0.001855	0	0
AQPEP	206338	broad.mit.edu	37	5	115319033	115319033	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:115319033C>T	uc003kro.2	+	2	909	c.745C>T	c.(745-747)CCT>TCT	p.P249S	AQPEP_uc003krp.2_RNA	NM_173800	NP_776161	Q6Q4G3	AMPQ_HUMAN	laeverin	249	Lumenal (Potential).				proteolysis	integral to membrane	metallopeptidase activity|zinc ion binding				0						GTATGTTTTCCCTTGTTTTGA	0.398													3	17					0	0	0.004672	0	0
AQPEP	206338	broad.mit.edu	37	5	115335539	115335539	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:115335539G>A	uc003kro.2	+	7	1619	c.1455G>A	c.(1453-1455)AAG>AAA	p.K485K	AQPEP_uc003krp.2_RNA|AQPEP_uc003krq.2_RNA|AQPEP_uc003krr.2_RNA|AQPEP_uc003krs.2_RNA	NM_173800	NP_776161	Q6Q4G3	AMPQ_HUMAN	laeverin	485	Lumenal (Potential).				proteolysis	integral to membrane	metallopeptidase activity|zinc ion binding				0						TGGCCATGAAGGTGGAAAATT	0.358													9	27					0	0	0.001855	0	0
AQPEP	206338	broad.mit.edu	37	5	115346571	115346571	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:115346571G>A	uc003kro.2	+	14	2391	c.2227G>A	c.(2227-2229)GAT>AAT	p.D743N	AQPEP_uc003krp.2_Intron|AQPEP_uc003krq.2_RNA|AQPEP_uc003krr.2_RNA|AQPEP_uc003krs.2_Intron	NM_173800	NP_776161	Q6Q4G3	AMPQ_HUMAN	laeverin	743	Lumenal (Potential).				proteolysis	integral to membrane	metallopeptidase activity|zinc ion binding				0						GAACATCTATGATATATACTC	0.323													4	30					0	0	0.009096	0	0
DMXL1	1657	broad.mit.edu	37	5	118485031	118485031	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:118485031G>A	uc003ksd.2	+	18	3690	c.3509G>A	c.(3508-3510)GGC>GAC	p.G1170D	DMXL1_uc010jcl.1_Missense_Mutation_p.G1170D	NM_005509	NP_005500	Q9Y485	DMXL1_HUMAN	Dmx-like 1	1170	WD 9.									ovary(2)	2		all_cancers(142;0.0314)|all_epithelial(76;0.00559)|Prostate(80;0.11)|Breast(839;0.231)		OV - Ovarian serous cystadenocarcinoma(64;0.000563)|Epithelial(69;0.00179)|all cancers(49;0.0243)		CCCCTGGCTGGCAAGGTACAA	0.423													20	45					0	0	0.008871	0	0
FAM170A	340069	broad.mit.edu	37	5	118969875	118969875	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:118969875G>A	uc003ksm.2	+	3	642	c.432G>A	c.(430-432)GAG>GAA	p.E144E	FAM170A_uc003ksl.2_Silent_p.E144E|FAM170A_uc003ksn.2_Silent_p.E144E|FAM170A_uc003kso.2_Silent_p.E97E	NM_182761	NP_877438	A1A519	F170A_HUMAN	family with sequence similarity 170, member A	144						intracellular	zinc ion binding			skin(1)	1						TCTCCTGGGAGACAGAGGAAA	0.473													20	41					0	0	0.014323	0	0
FTMT	94033	broad.mit.edu	37	5	121188022	121188022	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:121188022G>A	uc003kss.2	+	1	373	c.364G>A	c.(364-366)GAG>AAG	p.E122K		NM_177478	NP_803431	Q8N4E7	FTMT_HUMAN	ferritin mitochondrial precursor	122	Ferritin-like diiron.	Iron 1.|Iron 2.			cellular iron ion homeostasis|iron ion transport|positive regulation of cell proliferation|positive regulation of lyase activity|positive regulation of oxidoreductase activity|positive regulation of transferase activity	mitochondrion	ferric iron binding|ferroxidase activity			ovary(1)	1		all_cancers(142;0.0124)|Prostate(80;0.0322)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	Epithelial(69;0.000171)|OV - Ovarian serous cystadenocarcinoma(64;0.000188)|all cancers(49;0.0027)		GTCCCGGGAGGAGACCGAGCA	0.577													8	22					0	0	0.003080	0	0
SNCAIP	9627	broad.mit.edu	37	5	121780306	121780306	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:121780306G>A	uc003ksw.1	+	8	1677	c.1471G>A	c.(1471-1473)GAA>AAA	p.E491K	SNCAIP_uc011cwl.1_Missense_Mutation_p.E49K|SNCAIP_uc003ksx.1_Missense_Mutation_p.E538K|SNCAIP_uc003ksy.1_Missense_Mutation_p.E125K|SNCAIP_uc003ksz.1_Missense_Mutation_p.E125K|SNCAIP_uc010jcu.2_Missense_Mutation_p.E87K|SNCAIP_uc011cwm.1_Missense_Mutation_p.E125K|SNCAIP_uc003kta.1_Missense_Mutation_p.E123K|SNCAIP_uc010jcv.1_RNA|SNCAIP_uc010jcw.1_Missense_Mutation_p.E185K|SNCAIP_uc010jcx.1_Missense_Mutation_p.E431K|uc003ktb.1_Intron|SNCAIP_uc003ktc.1_Missense_Mutation_p.E7K	NM_005460	NP_005451	Q9Y6H5	SNCAP_HUMAN	synuclein alpha interacting protein	491					cell death|dopamine metabolic process|regulation of inclusion body assembly|regulation of neurotransmitter secretion	cytoplasm|neuronal cell body|nucleolus|presynaptic membrane	ubiquitin protein ligase binding			ovary(1)|pancreas(1)	2		all_cancers(142;0.00787)|Prostate(80;0.0327)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	OV - Ovarian serous cystadenocarcinoma(64;0.000625)|Epithelial(69;0.00216)|all cancers(49;0.0232)		CCACGCTGGGGAAAAGCCCTC	0.537													11	37					0	0	0.008291	0	0
SNCAIP	9627	broad.mit.edu	37	5	121786323	121786323	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:121786323G>A	uc003ksw.1	+	10	1987	c.1781G>A	c.(1780-1782)GGG>GAG	p.G594E	SNCAIP_uc011cwl.1_Missense_Mutation_p.G152E|SNCAIP_uc003ksx.1_Missense_Mutation_p.G641E|SNCAIP_uc003ksy.1_Missense_Mutation_p.G228E|SNCAIP_uc003ksz.1_Missense_Mutation_p.G228E|SNCAIP_uc010jcu.2_Missense_Mutation_p.G190E|SNCAIP_uc011cwm.1_Missense_Mutation_p.G228E|SNCAIP_uc003kta.1_Missense_Mutation_p.G226E|SNCAIP_uc010jcv.1_RNA|SNCAIP_uc010jcw.1_Missense_Mutation_p.G288E|SNCAIP_uc010jcx.1_Missense_Mutation_p.G534E|uc003ktb.1_RNA|SNCAIP_uc003ktc.1_Missense_Mutation_p.G110E	NM_005460	NP_005451	Q9Y6H5	SNCAP_HUMAN	synuclein alpha interacting protein	594					cell death|dopamine metabolic process|regulation of inclusion body assembly|regulation of neurotransmitter secretion	cytoplasm|neuronal cell body|nucleolus|presynaptic membrane	ubiquitin protein ligase binding			ovary(1)|pancreas(1)	2		all_cancers(142;0.00787)|Prostate(80;0.0327)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	OV - Ovarian serous cystadenocarcinoma(64;0.000625)|Epithelial(69;0.00216)|all cancers(49;0.0232)		GTCCAAGAGGGGATTCAGGTT	0.478													17	47					0	0	0.004990	0	0
FBN2	2201	broad.mit.edu	37	5	127728929	127728929	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:127728929C>T	uc003kuu.2	-	10	1803	c.1364G>A	c.(1363-1365)GGG>GAG	p.G455E	FBN2_uc003kuv.2_Missense_Mutation_p.G422E	NM_001999	NP_001990	P35556	FBN2_HUMAN	fibrillin 2 precursor	455					bone trabecula formation|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	microfibril	calcium ion binding|extracellular matrix structural constituent			ovary(8)|large_intestine(4)|pancreas(1)|kidney(1)|skin(1)	15		all_cancers(142;0.0216)|Prostate(80;0.0551)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0821)|Epithelial(69;0.146)		GAAGCCTGTCCCTCCTGGGCC	0.612													13	50					0	0	0.001855	0	0
FBN2	2201	broad.mit.edu	37	5	127855039	127855039	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:127855039C>T	uc003kuu.2	-	5	994	c.555G>A	c.(553-555)CAG>CAA	p.Q185Q	FBN2_uc003kuv.2_Silent_p.Q152Q|FBN2_uc003kuw.3_Silent_p.Q185Q|FBN2_uc003kux.1_Silent_p.Q185Q	NM_001999	NP_001990	P35556	FBN2_HUMAN	fibrillin 2 precursor	185	EGF-like 3.				bone trabecula formation|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	microfibril	calcium ion binding|extracellular matrix structural constituent			ovary(8)|large_intestine(4)|pancreas(1)|kidney(1)|skin(1)	15		all_cancers(142;0.0216)|Prostate(80;0.0551)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0821)|Epithelial(69;0.146)		GTCCACCATTCTGACATCCAT	0.433													10	17					0	0	0.010729	0	0
SHROOM1	134549	broad.mit.edu	37	5	132161789	132161789	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:132161789G>A	uc003kxx.2	-	4	849	c.44C>T	c.(43-45)TCG>TTG	p.S15L	SHROOM1_uc003kxy.1_Missense_Mutation_p.S15L	NM_133456	NP_597713	Q2M3G4	SHRM1_HUMAN	shroom family member 1	15					actin filament bundle assembly|cell morphogenesis	cytoplasm|microtubule	actin filament binding			pancreas(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			GCTAGTGGACGAGGCCGGGGA	0.701													4	14					0	0	0.000602	0	0
GDF9	2661	broad.mit.edu	37	5	132197865	132197865	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:132197865G>A	uc003kxz.1	-	2	1033	c.781C>T	c.(781-783)CCC>TCC	p.P261S	GDF9_uc011cxj.1_Missense_Mutation_p.P173S	NM_005260	NP_005251	O60383	GDF9_HUMAN	growth differentiation factor 9 precursor	261					female gamete generation|transforming growth factor beta receptor signaling pathway	extracellular space	cytokine activity|growth factor activity			skin(1)	1		all_cancers(142;0.105)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			ATCAGTGAGGGGGACACCAGA	0.438													11	24					0	0	0.001855	0	0
TGFBI	7045	broad.mit.edu	37	5	135392410	135392410	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:135392410G>A	uc003lbf.3	+	12	1765	c.1604G>A	c.(1603-1605)GGA>GAA	p.G535E	TGFBI_uc003lbg.3_Missense_Mutation_p.G268E|TGFBI_uc003lbh.3_Missense_Mutation_p.G361E|TGFBI_uc011cyb.1_Missense_Mutation_p.G361E|TGFBI_uc010jed.2_Missense_Mutation_p.G268E	NM_000358	NP_000349	Q15582	BGH3_HUMAN	transforming growth factor, beta-induced, 68kDa	535	FAS1 4.				angiogenesis|cell adhesion|cell proliferation|negative regulation of cell adhesion|response to stimulus|visual perception	extracellular space|proteinaceous extracellular matrix	integrin binding			breast(3)|ovary(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			AACCGGGAAGGAGTCTACACA	0.507													11	25					0	0	0.010729	0	0
MYOT	9499	broad.mit.edu	37	5	137217680	137217680	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:137217680G>A	uc011cye.1	+	6	719	c.702G>A	c.(700-702)AGG>AGA	p.R234R	MYOT_uc003lbv.2_Silent_p.R234R|MYOT_uc011cyg.1_Silent_p.R50R|MYOT_uc011cyh.1_Silent_p.R119R	NM_001135940	NP_001129412	Q9UBF9	MYOTI_HUMAN	myotilin isoform b	234	Necessary for interaction with ACTA1.|Necessary for interaction with FLNC.				muscle contraction	actin cytoskeleton|sarcolemma|sarcomere	actin binding|structural constituent of muscle			large_intestine(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0109)			CAACCTCAAGGGGAGATGTGA	0.363													11	20					0	0	0.013537	0	0
CXXC5	51523	broad.mit.edu	37	5	139060274	139060274	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:139060274C>T	uc010jfg.1	+	2	456	c.166C>T	c.(166-168)CCC>TCC	p.P56S	CXXC5_uc003let.2_Missense_Mutation_p.P56S	NM_016463	NP_057547	Q7LFL8	CXXC5_HUMAN	CXXC finger 5	56					positive regulation of I-kappaB kinase/NF-kappaB cascade	cytoplasm|nucleus	DNA binding|signal transducer activity|zinc ion binding			central_nervous_system(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CACACCACCCCCCGAGCGTCG	0.577													9	27					0	0	0.004482	0	0
PSD2	84249	broad.mit.edu	37	5	139193879	139193879	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:139193879C>T	uc003leu.1	+	4	1151	c.946C>T	c.(946-948)CGG>TGG	p.R316W		NM_032289	NP_115665	Q9BQI7	PSD2_HUMAN	pleckstrin and Sec7 domain containing 2	316	SEC7.				regulation of ARF protein signal transduction	cytoplasm|integral to membrane	ARF guanyl-nucleotide exchange factor activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGCTGCTCATCGGCTGGCACG	0.647													7	15					0	0	0.003080	0	0
PSD2	84249	broad.mit.edu	37	5	139221957	139221957	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:139221957G>A	uc003leu.1	+	15	2419	c.2214G>A	c.(2212-2214)GGG>GGA	p.G738G		NM_032289	NP_115665	Q9BQI7	PSD2_HUMAN	pleckstrin and Sec7 domain containing 2	738					regulation of ARF protein signal transduction	cytoplasm|integral to membrane	ARF guanyl-nucleotide exchange factor activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTCTGGAAGGGGATGACCCTT	0.547													12	25					0	0	0.010729	0	0
ANKHD1-EIF4EBP3	404734	broad.mit.edu	37	5	139908732	139908732	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:139908732C>T	uc003lfs.1	+	29	6325	c.6201C>T	c.(6199-6201)TCC>TCT	p.S2067S	ANKHD1_uc003lfr.2_Silent_p.S2067S|ANKHD1-EIF4EBP3_uc011czh.1_Silent_p.S806S|ANKHD1_uc003lfw.2_Silent_p.S705S|ANKHD1_uc010jfl.2_Silent_p.S502S|ANKHD1-EIF4EBP3_uc003lfx.1_Silent_p.S204S	NM_020690	NP_065741	Q8IWZ2	Q8IWZ2_HUMAN	ANKHD1-EIF4EBP3 protein	2067						cytoplasm|nucleus	RNA binding			ovary(6)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTCACCCATCCAGTAGTCCCA	0.507													5	73					0	0	0.000602	0	0
SLC35A4	113829	broad.mit.edu	37	5	139946813	139946813	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:139946813C>T	uc003lgg.1	+	3	787	c.59C>T	c.(58-60)ACC>ATC	p.T20I	APBB3_uc003lgc.1_5'Flank|APBB3_uc003lgd.1_5'Flank|APBB3_uc003lge.1_5'Flank|APBB3_uc003lgf.1_5'Flank|APBB3_uc010jfp.1_5'Flank|APBB3_uc011czi.1_5'Flank|APBB3_uc010jfr.1_5'Flank|SLC35A4_uc003lgh.1_Missense_Mutation_p.T20I	NM_080670	NP_542401	Q96G79	S35A4_HUMAN	solute carrier family 35, member A4	20	Helical; (Potential).					Golgi membrane|integral to membrane	sugar:hydrogen symporter activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCCCGCTGGACCCTGATGCTA	0.647													17	59					0	0	0.006122	0	0
HARS	3035	broad.mit.edu	37	5	140062742	140062742	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:140062742G>A	uc003lgv.2	-	3	325	c.243C>T	c.(241-243)ATC>ATT	p.I81I	HARS_uc003lgu.2_Silent_p.I12I|HARS_uc011czm.1_Intron|HARS_uc003lgw.2_Silent_p.I81I|HARS_uc011czn.1_Intron|HARS_uc010jfu.2_Silent_p.I81I|HARS_uc011czo.1_Silent_p.I81I|HARS_uc011czp.1_Intron|HARS_uc011czq.1_Silent_p.I81I	NM_002109	NP_002100	P12081	SYHC_HUMAN	histidyl-tRNA synthetase	81					histidyl-tRNA aminoacylation	cytosol	ATP binding|histidine-tRNA ligase activity			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)		L-Histidine(DB00117)	TGAAGCAACGGATGATTACGT	0.483													13	38					0	0	0.001855	0	0
PCDHA1	56147	broad.mit.edu	37	5	140166226	140166226	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:140166226C>T	uc003lhb.2	+	1	351	c.351C>T	c.(349-351)TTC>TTT	p.F117F	PCDHA1_uc003lha.2_Silent_p.F117F|PCDHA1_uc003lgz.2_Silent_p.F117F	NM_018900	NP_061723	Q9Y5I3	PCDA1_HUMAN	protocadherin alpha 1 isoform 1 precursor	117	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGCAGGTTTTCCATGTGGAGG	0.507													8	43					0	0	0.004482	0	0
PCDHA2	56146	broad.mit.edu	37	5	140175833	140175833	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:140175833G>A	uc003lhd.2	+	1	1390	c.1284G>A	c.(1282-1284)CGG>CGA	p.R428R	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhc.1_Silent_p.R428R|PCDHA2_uc011czy.1_Silent_p.R428R	NM_018905	NP_061728	Q9Y5H9	PCDA2_HUMAN	protocadherin alpha 2 isoform 1 precursor	428	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGACCGCACGGGACGGGGGCT	0.632													15	47					0	0	0.006122	0	0
PCDHA5	56143	broad.mit.edu	37	5	140201466	140201466	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:140201466G>A	uc003lhl.2	+	1	106	c.106G>A	c.(106-108)GAG>AAG	p.E36K	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Missense_Mutation_p.E36K|PCDHA5_uc003lhj.1_Missense_Mutation_p.E36K	NM_018908	NP_061731	Q9Y5H7	PCDA5_HUMAN	protocadherin alpha 5 isoform 1 precursor	36	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(1)|breast(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTCGATCCCGGAGGAAGCCAA	0.652													16	45					0	0	0.004007	0	0
PCDHA6	56142	broad.mit.edu	37	5	140208481	140208481	+	Missense_Mutation	SNP	C	T	T	rs138760871		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:140208481C>T	uc003lho.2	+	1	832	c.805C>T	c.(805-807)CGG>TGG	p.R269W	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Missense_Mutation_p.R269W|PCDHA6_uc011dab.1_Missense_Mutation_p.R269W	NM_018909	NP_061732	Q9UN73	PCDA6_HUMAN	protocadherin alpha 6 isoform 1 precursor	269	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			haematopoietic_and_lymphoid_tissue(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGCTTCTGATCGGGATGAAGG	0.398													13	35					0	0	0.001855	0	0
PCDHA6	56142	broad.mit.edu	37	5	140209591	140209591	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:140209591G>A	uc003lho.2	+	1	1942	c.1915G>A	c.(1915-1917)GAA>AAA	p.E639K	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc011dab.1_Missense_Mutation_p.E639K	NM_018909	NP_061732	Q9UN73	PCDA6_HUMAN	protocadherin alpha 6 isoform 1 precursor	639	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			haematopoietic_and_lymphoid_tissue(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGTCCTGGACGAAGCGGACTC	0.667													10	31					0	0	0.008291	0	0
PCDHA7	56141	broad.mit.edu	37	5	140214295	140214295	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:140214295C>T	uc003lhq.2	+	1	327	c.327C>T	c.(325-327)ATC>ATT	p.I109I	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc011dac.1_Silent_p.I109I	NM_018910	NP_061733	Q9UN72	PCDA7_HUMAN	protocadherin alpha 7 isoform 1 precursor	109	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGGAGGTGATCGTGGAAAGGC	0.552													35	152					0	0	0.005524	0	0
PCDHA7	56141	broad.mit.edu	37	5	140215258	140215259	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:140215258_140215259GG>AA	uc003lhq.2	+	1	1290_1291	c.1290_1291GG>AA	c.(1288-1293)GGGGGC>GGAAGC	p.G431S	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc011dac.1_Missense_Mutation_p.G431S	NM_018910	NP_061733	Q9UN72	PCDA7_HUMAN	protocadherin alpha 7 isoform 1 precursor	431	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGCGGGACGGGGGCTCGCCTTC	0.624													22	70					0	0	0.004672	0	0
PCDHA8	56140	broad.mit.edu	37	5	140222568	140222568	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:140222568C>T	uc003lhs.2	+	1	1662	c.1662C>T	c.(1660-1662)TTC>TTT	p.F554F	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhr.1_Silent_p.F554F	NM_018911	NP_061734	Q9Y5H6	PCDA8_HUMAN	protocadherin alpha 8 isoform 1 precursor	554	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			upper_aerodigestive_tract(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGCAGGTGTTCGTGCTGGACG	0.701													17	44					0	0	0.006122	0	0
PCDHA8	56140	broad.mit.edu	37	5	140222729	140222729	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:140222729C>T	uc003lhs.2	+	1	1823	c.1823C>T	c.(1822-1824)TCG>TTG	p.S608L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhr.1_Missense_Mutation_p.S608L	NM_018911	NP_061734	Q9Y5H6	PCDA8_HUMAN	protocadherin alpha 8 isoform 1 precursor	608	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			upper_aerodigestive_tract(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCGTGGCTTTCGTATGAGCTG	0.682													10	38					0	0	0.010729	0	0
PCDHA9	9752	broad.mit.edu	37	5	140228407	140228407	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:140228407C>T	uc003lhu.2	+	1	1051	c.327C>T	c.(325-327)ATC>ATT	p.I109I	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lht.1_Silent_p.I109I	NM_031857	NP_114063	Q9Y5H5	PCDA9_HUMAN	protocadherin alpha 9 isoform 1 precursor	109	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			large_intestine(2)|ovary(2)|skin(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGGAGGTGATCGTAGACAGGC	0.542													37	55					0	0	0.006999	0	0
PCDHA11	56138	broad.mit.edu	37	5	140248751	140248751	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:140248751C>T	uc003lia.2	+	1	921	c.63C>T	c.(61-63)CTC>CTT	p.L21L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc011dae.1_Silent_p.L21L	NM_018902	NP_061725	Q9Y5I1	PCDAB_HUMAN	protocadherin alpha 11 isoform 1 precursor	21					homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TTCTCCTCCTCGAATTCTGGG	0.577													7	51					0	0	0.003080	0	0
PCDHA11	56138	broad.mit.edu	37	5	140248800	140248801	+	Missense_Mutation	DNP	GA	AC	AC			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:140248800_140248801GA>AC	uc003lia.2	+	1	970_971	c.112_113GA>AC	c.(112-114)GAG>ACG	p.E38T	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc011dae.1_Missense_Mutation_p.E38T	NM_018902	NP_061725	Q9Y5I1	PCDAB_HUMAN	protocadherin alpha 11 isoform 1 precursor	38	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGTCTCGGAGGAGGCCAAACAC	0.649													7	58					0	0	0.004672	0	0
PCDHAC1	56135	broad.mit.edu	37	5	140307560	140307560	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:140307560C>T	uc003lih.2	+	1	1259	c.1083C>T	c.(1081-1083)CTC>CTT	p.L361L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Intron|PCDHA13_uc003lif.2_Intron|PCDHAC1_uc003lig.1_Silent_p.L361L	NM_018898	NP_061721	Q9H158	PCDC1_HUMAN	protocadherin alpha subfamily C, 1 isoform 1	361	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGATTGCTCTCTTTAGTGTAA	0.512													13	30					0	0	0.001855	0	0
PCDHB1	29930	broad.mit.edu	37	5	140431463	140431463	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:140431463G>A	uc003lik.1	+	1	485	c.408G>A	c.(406-408)AAG>AAA	p.K136K		NM_013340	NP_037472	Q9Y5F3	PCDB1_HUMAN	protocadherin beta 1 precursor	136	Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TCCTAAACAAGGAGCCGCTTT	0.532													6	20					0	0	0.001168	0	0
PCDHB2	56133	broad.mit.edu	37	5	140475257	140475257	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:140475257C>T	uc003lil.2	+	1	1021	c.883C>T	c.(883-885)CGA>TGA	p.R295*	PCDHB2_uc003lim.1_5'UTR	NM_018936	NP_061759	Q9Y5E7	PCDB2_HUMAN	protocadherin beta 2 precursor	295	Extracellular (Potential).|Cadherin 3.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(3)|upper_aerodigestive_tract(2)|pancreas(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CAAAACGTTTCGATTAAGTGC	0.428													5	27					0	0	0.001168	0	0
PCDHB2	56133	broad.mit.edu	37	5	140475301	140475301	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:140475301G>A	uc003lil.2	+	1	1065	c.927G>A	c.(925-927)CTG>CTA	p.L309L	PCDHB2_uc003lim.1_5'UTR	NM_018936	NP_061759	Q9Y5E7	PCDB2_HUMAN	protocadherin beta 2 precursor	309	Extracellular (Potential).|Cadherin 3.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(3)|upper_aerodigestive_tract(2)|pancreas(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GACAGAAACTGGATTTCGAAT	0.408													12	33					0	0	0.001855	0	0
PCDHB3	56132	broad.mit.edu	37	5	140480638	140480638	+	Missense_Mutation	SNP	A	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:140480638A>C	uc003lio.2	+	1	405	c.405A>C	c.(403-405)GAA>GAC	p.E135D	uc003lin.2_Intron	NM_018937	NP_061760	Q9Y5E6	PCDB3_HUMAN	protocadherin beta 3 precursor	135	Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TATTCTTTGAAAATGAAATGC	0.398													22	34					0	0	0.012319	0	0
PCDHB3	56132	broad.mit.edu	37	5	140480965	140480965	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:140480965G>A	uc003lio.2	+	1	732	c.732G>A	c.(730-732)CAG>CAA	p.Q244Q	uc003lin.2_Intron	NM_018937	NP_061760	Q9Y5E6	PCDB3_HUMAN	protocadherin beta 3 precursor	244	Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AATTTGCACAGCCGCTCTATG	0.507													17	52					0	0	0.004990	0	0
PCDHB4	56131	broad.mit.edu	37	5	140502130	140502130	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:140502130C>T	uc003lip.1	+	1	550	c.550C>T	c.(550-552)CAT>TAT	p.H184Y		NM_018938	NP_061761	Q9Y5E5	PCDB4_HUMAN	protocadherin beta 4 precursor	184	Cadherin 2.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	cytoplasm|integral to plasma membrane|intermediate filament cytoskeleton	calcium ion binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CACTCGAAATCATAGTGAGGG	0.473													10	15					0	0	0.008291	0	0
PCDHB4	56131	broad.mit.edu	37	5	140502505	140502505	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:140502505G>A	uc003lip.1	+	1	925	c.925G>A	c.(925-927)GAA>AAA	p.E309K		NM_018938	NP_061761	Q9Y5E5	PCDB4_HUMAN	protocadherin beta 4 precursor	309	Cadherin 3.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	cytoplasm|integral to plasma membrane|intermediate filament cytoskeleton	calcium ion binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ATTGGATTTCGAAAAAATTAA	0.358													22	78					0	0	0.012319	0	0
PCDHB5	26167	broad.mit.edu	37	5	140515473	140515473	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:140515473C>T	uc003liq.2	+	1	674	c.457C>T	c.(457-459)CCC>TCC	p.P153S		NM_015669	NP_056484	Q9Y5E4	PCDB5_HUMAN	protocadherin beta 5 precursor	153	Cadherin 2.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding|protein binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GACTGTGTTTCCCTTAAAAAT	0.463													11	40					0	0	0.008291	0	0
PCDHB5	26167	broad.mit.edu	37	5	140517124	140517124	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:140517124C>T	uc003liq.2	+	1	2325	c.2108C>T	c.(2107-2109)TCG>TTG	p.S703L		NM_015669	NP_056484	Q9Y5E4	PCDB5_HUMAN	protocadherin beta 5 precursor	703	Helical; (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding|protein binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TTCCTCTTTTCGGTGCTCCTG	0.701													22	65					0	0	0.012319	0	0
PCDHB6	56130	broad.mit.edu	37	5	140530066	140530067	+	Missense_Mutation	DNP	TG	CT	CT			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:140530066_140530067TG>CT	uc003lir.2	+	1	228_229	c.228_229TG>CT	c.(226-231)TTTGAT>TTCTAT	p.D77Y	PCDHB6_uc011dah.1_Intron	NM_018939	NP_061762	Q9Y5E3	PCDB6_HUMAN	protocadherin beta 6 precursor	77	Extracellular (Potential).|Cadherin 1.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ATTTGCAGTTTGATCCACAGAC	0.53													22	61					0	0	0.004672	0	0
PCDHB8	56128	broad.mit.edu	37	5	140558180	140558180	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:140558180G>A	uc011dai.1	+	1	751	c.565G>A	c.(565-567)GGC>AGC	p.G189S	PCDHB16_uc003liv.2_5'Flank	NM_019120	NP_061993	Q9UN66	PCDB8_HUMAN	protocadherin beta 8 precursor	189	Cadherin 2.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ACGCAGTGATGGCAGGAAATA	0.502													6	21					0	0	0.001984	0	0
PCDHB8	56128	broad.mit.edu	37	5	140558812	140558812	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:140558812G>A	uc011dai.1	+	1	1383	c.1197G>A	c.(1195-1197)GGG>GGA	p.G399G	PCDHB16_uc003liv.2_5'Flank	NM_019120	NP_061993	Q9UN66	PCDB8_HUMAN	protocadherin beta 8 precursor	399	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CTTCTGTGGGGAACTTTTACA	0.463													12	26					0	0	0.010729	0	0
PCDHB16	57717	broad.mit.edu	37	5	140563698	140563698	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:140563698G>A	uc003liv.2	+	1	2719	c.1564G>A	c.(1564-1566)GAG>AAG	p.E522K		NM_020957	NP_066008	Q9NRJ7	PCDBG_HUMAN	protocadherin beta 16 precursor	522	Extracellular (Potential).|Cadherin 5.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GCTGGACTACGAGGCCCTGCG	0.701													15	62					0	0	0.003163	0	0
PCDHB16	57717	broad.mit.edu	37	5	140563715	140563715	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:140563715C>T	uc003liv.2	+	1	2736	c.1581C>T	c.(1579-1581)TTC>TTT	p.F527F		NM_020957	NP_066008	Q9NRJ7	PCDBG_HUMAN	protocadherin beta 16 precursor	527	Extracellular (Potential).|Cadherin 5.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TGCGGGAGTTCGAGTTCCGCG	0.687													23	54					0	0	0.003330	0	0
PCDHB12	56124	broad.mit.edu	37	5	140590609	140590609	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:140590609G>A	uc003liz.2	+	1	2319	c.2130G>A	c.(2128-2130)GCG>GCA	p.A710A	PCDHB12_uc011dak.1_Silent_p.A373A|PCDHB13_uc003lja.1_5'Flank	NM_018932	NP_061755	Q9Y5F1	PCDBC_HUMAN	protocadherin beta 12 precursor	710	Helical; (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TGTTCGTGGCGGTGCGGCTGT	0.692													27	80					0	0	0.008361	0	0
PCDHB14	56122	broad.mit.edu	37	5	140603086	140603086	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:140603086C>T	uc003ljb.2	+	1	9	c.9C>T	c.(7-9)ATC>ATT	p.I3I	PCDHB14_uc011dal.1_5'UTR	NM_018934	NP_061757	Q9Y5E9	PCDBE_HUMAN	protocadherin beta 14 precursor	3					calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CCATGGAGATCAGAGGGGCAC	0.468													5	17					0	0	0.001168	0	0
PCDHB14	56122	broad.mit.edu	37	5	140605446	140605446	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:140605446G>A	uc003ljb.2	+	1	2369	c.2369G>A	c.(2368-2370)CGA>CAA	p.R790Q	PCDHB14_uc011dal.1_Missense_Mutation_p.R637Q	NM_018934	NP_061757	Q9Y5E9	PCDBE_HUMAN	protocadherin beta 14 precursor	790	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GAGAACTTTCGAAATAGCTTT	0.348													7	19					0	0	0.003080	0	0
PCDHB15	56121	broad.mit.edu	37	5	140625948	140625948	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:140625948G>A	uc003lje.2	+	1	802	c.802G>A	c.(802-804)GAT>AAT	p.D268N		NM_018935	NP_061758	Q9Y5E8	PCDBF_HUMAN	protocadherin beta 15 precursor	268	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|breast(2)|skin(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CTCTGCTAGGGATTTAGACAC	0.498													5	9					0	0	0.000602	0	0
SLC25A2	83884	broad.mit.edu	37	5	140682711	140682711	+	Missense_Mutation	SNP	G	A	A	rs146929069	by1000genomes	TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:140682711G>A	uc003ljf.2	-	1	902	c.722C>T	c.(721-723)TCC>TTC	p.S241F		NM_031947	NP_114153	Q9BXI2	ORNT2_HUMAN	solute carrier family 25 member 2	241	Helical; Name=6; (Potential).|Solcar 3.				mitochondrial ornithine transport|urea cycle	integral to membrane|mitochondrial inner membrane	L-ornithine transmembrane transporter activity			ovary(1)	1		all_lung(500;0.000249)|Lung NSC(810;0.0011)|Ovarian(839;0.00556)|Breast(839;0.0173)|all_hematologic(541;0.152)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)	GBM - Glioblastoma multiforme(465;0.00204)	L-Ornithine(DB00129)	CCCATACATGGAAAGAACTTG	0.413													7	40					0	0	0.001984	0	0
PCDHGA1	56114	broad.mit.edu	37	5	140711178	140711178	+	Silent	SNP	C	T	T	rs148638556		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:140711178C>T	uc003lji.1	+	1	927	c.927C>T	c.(925-927)TTC>TTT	p.F309F	PCDHGA1_uc011dan.1_Silent_p.F309F	NM_018912	NP_061735	Q9Y5H4	PCDG1_HUMAN	protocadherin gamma subfamily A, 1 isoform 1	309	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|breast(1)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CACTAGATTTCGAAGAATACA	0.373													10	18					0	0	0.006214	0	0
PCDHGA1	56114	broad.mit.edu	37	5	140712038	140712038	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:140712038G>A	uc003lji.1	+	1	1787	c.1787G>A	c.(1786-1788)AGA>AAA	p.R596K	PCDHGA1_uc011dan.1_Missense_Mutation_p.R596K	NM_018912	NP_061735	Q9Y5H4	PCDG1_HUMAN	protocadherin gamma subfamily A, 1 isoform 1	596	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|breast(1)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCGGTGGACAGAGACTCGGGC	0.697													6	34					0	0	0.001168	0	0
PCDHGA1	56114	broad.mit.edu	37	5	140712378	140712378	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:140712378C>T	uc003lji.1	+	1	2127	c.2127C>T	c.(2125-2127)ATC>ATT	p.I709I	PCDHGA1_uc011dan.1_Silent_p.I709I	NM_018912	NP_061735	Q9Y5H4	PCDG1_HUMAN	protocadherin gamma subfamily A, 1 isoform 1	709	Helical; (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|breast(1)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCTTCGTCATCGTGCTGCTGG	0.667													18	53					0	0	0.006122	0	0
PCDHGA4	56111	broad.mit.edu	37	5	140735401	140735401	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:140735401C>T	uc003ljq.1	+	1	634	c.634C>T	c.(634-636)CTC>TTC	p.L212F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljp.1_Missense_Mutation_p.L212F	NM_018917	NP_061740	Q9Y5G9	PCDG4_HUMAN	protocadherin gamma subfamily A, 4 isoform 1	212	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCACCTCGTTCTCACGGCCTT	0.567													3	1					0	0	0.004672	0	0
PCDHGB3	56102	broad.mit.edu	37	5	140750859	140750859	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:140750859G>A	uc003ljw.1	+	1	898	c.898G>A	c.(898-900)GAA>AAA	p.E300K	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGA6_uc003ljy.1_5'Flank|PCDHGB3_uc011dat.1_Missense_Mutation_p.E300K|PCDHGA6_uc011dau.1_5'Flank	NM_018924	NP_061747	Q9Y5G1	PCDGF_HUMAN	protocadherin gamma subfamily B, 3 isoform 1	300	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TAAAACGGGGGAACTCACCAC	0.443													28	90					0	0	0.008361	0	0
PCDHGB3	56102	broad.mit.edu	37	5	140752214	140752214	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:140752214C>T	uc003ljw.1	+	1	2253	c.2253C>T	c.(2251-2253)TCC>TCT	p.S751S	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGA6_uc003ljy.1_5'Flank|PCDHGB3_uc011dat.1_Silent_p.S751S|PCDHGA6_uc011dau.1_5'Flank	NM_018924	NP_061747	Q9Y5G1	PCDGF_HUMAN	protocadherin gamma subfamily B, 3 isoform 1	751	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGCCTTATTCCTACAATCCGT	0.478													8	21					0	0	0.003080	0	0
PCDHGA6	56109	broad.mit.edu	37	5	140753757	140753757	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:140753757C>T	uc003ljy.1	+	1	107	c.107C>T	c.(106-108)CCC>CTC	p.P36L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc011dau.1_Missense_Mutation_p.P36L	NM_018919	NP_061742	Q9Y5G7	PCDG6_HUMAN	protocadherin gamma subfamily A, 6 isoform 1	36	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TACTCTATTCCCGAGGAGCTG	0.657													9	11					0	0	0.008291	0	0
PCDHGA7	56108	broad.mit.edu	37	5	140762917	140762917	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:140762917C>T	uc003lka.1	+	1	451	c.451C>T	c.(451-453)CGG>TGG	p.R151W	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003ljz.1_Missense_Mutation_p.R151W	NM_018920	NP_061743	Q9Y5G6	PCDG7_HUMAN	protocadherin gamma subfamily A, 7 isoform 1	151	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCCTGGGGTTCGGTTTCCGTT	0.473													9	22					0	0	0.004482	0	0
PCDHGA7	56108	broad.mit.edu	37	5	140763674	140763674	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:140763674G>A	uc003lka.1	+	1	1208	c.1208G>A	c.(1207-1209)AGA>AAA	p.R403K	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003ljz.1_Missense_Mutation_p.R403K	NM_018920	NP_061743	Q9Y5G6	PCDG7_HUMAN	protocadherin gamma subfamily A, 7 isoform 1	403	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AATTATTATAGATTGGTCACA	0.398													3	1					0	0	0.004672	0	0
PCDHGB5	56101	broad.mit.edu	37	5	140779038	140779038	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:140779038C>T	uc003lkf.1	+	1	1344	c.1344C>T	c.(1342-1344)TTC>TTT	p.F448F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc011daw.1_Silent_p.F448F	NM_018925	NP_061748	Q9Y5G0	PCDGH_HUMAN	protocadherin gamma subfamily B, 5 isoform 1	448	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTCCGGTTTTCCACCAGGCGT	0.582													17	33					0	0	0.007413	0	0
PCDHGA12	26025	broad.mit.edu	37	5	140812029	140812029	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:140812029C>T	uc003lkt.1	+	1	1872	c.1703C>T	c.(1702-1704)CCC>CTC	p.P568L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lkp.1_Intron|PCDHGA11_uc003lkq.1_Intron|PCDHGA12_uc011dba.1_Missense_Mutation_p.P568L	NM_003735	NP_003726	O60330	PCDGC_HUMAN	protocadherin gamma subfamily A, 12 isoform 1	568	Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|pancreas(1)|skin(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCCGCCCTCCCCACGGACGGT	0.677													24	81					0	0	0.003330	0	0
DIAPH1	1729	broad.mit.edu	37	5	140908358	140908359	+	Silent	DNP	GG	AA	AA			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:140908358_140908359GG>AA	uc003llb.3	-	23	3069_3070	c.2928_2929CC>TT	c.(2926-2931)CTCCTA>CTTTTA	p.976_977LL>LL	DIAPH1_uc011dbd.1_5'Flank|DIAPH1_uc003llc.3_Silent_p.967_968LL>LL|DIAPH1_uc010jgc.1_Silent_p.412_413LL>LL	NM_005219	NP_005210	O60610	DIAP1_HUMAN	diaphanous 1 isoform 1	976_977	FH2.				regulation of microtubule-based process|sensory perception of sound	cytoplasm|cytoskeleton|ruffle membrane	actin binding|receptor binding|Rho GTPase binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTAATCTCTAGGAGATTGGAAA	0.446													18	32					0	0	0.004672	0	0
DIAPH1	1729	broad.mit.edu	37	5	140954622	140954623	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:140954622_140954623CC>TT	uc003llb.3	-	15	1693_1694	c.1552_1553GG>AA	c.(1552-1554)GGA>AAA	p.G518K	DIAPH1_uc003llc.3_Missense_Mutation_p.G509K|DIAPH1_uc010jgc.1_5'Flank	NM_005219	NP_005210	O60610	DIAP1_HUMAN	diaphanous 1 isoform 1	518	Potential.				regulation of microtubule-based process|sensory perception of sound	cytoplasm|cytoskeleton|ruffle membrane	actin binding|receptor binding|Rho GTPase binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ATCTTTTTCTCCCTGAAGATCT	0.46													10	35					0	0	0.004672	0	0
PCDH12	51294	broad.mit.edu	37	5	141336751	141336751	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:141336751G>A	uc003llx.2	-	1	1877	c.666C>T	c.(664-666)CCC>CCT	p.P222P		NM_016580	NP_057664	Q9NPG4	PCD12_HUMAN	protocadherin 12 precursor	222	Extracellular (Potential).|Cadherin 2.				neuron recognition	integral to plasma membrane	calcium ion binding			ovary(3)	3		all_hematologic(541;0.0999)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTGACTTGGGGGGGTTCCCAT	0.478													19	54					0	0	0.008871	0	0
NR3C1	2908	broad.mit.edu	37	5	142779717	142779718	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:142779717_142779718CC>TT	uc003lmz.2	-	2	1179_1180	c.687_688GG>AA	c.(685-690)GCGGGA>GCAAGA	p.G230R	NR3C1_uc003lmy.2_Missense_Mutation_p.G230R|NR3C1_uc003lna.2_Missense_Mutation_p.G230R|NR3C1_uc003lnb.2_Missense_Mutation_p.G230R|NR3C1_uc011dbk.1_Intron|NR3C1_uc003lnc.2_Missense_Mutation_p.G230R|NR3C1_uc003lnd.2_Missense_Mutation_p.G230R|NR3C1_uc003lne.2_Missense_Mutation_p.G230R|NR3C1_uc003lnf.2_Missense_Mutation_p.G230R|NR3C1_uc003lng.2_Missense_Mutation_p.G230R|NR3C1_uc003lnh.2_Missense_Mutation_p.G230R|NR3C1_uc003lni.2_Missense_Mutation_p.G230R	NM_000176	NP_000167	P04150	GCR_HUMAN	glucocorticoid receptor isoform alpha	230	Modulating.				chromatin modification|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to protein stimulus|transcription from RNA polymerase II promoter	mitochondrial matrix|nucleoplasm	glucocorticoid receptor activity|protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid binding|zinc ion binding			ovary(2)	2		Acute lymphoblastic leukemia(2;3.2e-05)|all_hematologic(2;0.000361)	KIRC - Kidney renal clear cell carcinoma(527;0.00111)|Kidney(363;0.00176)		Amcinonide(DB00288)|Betamethasone(DB00443)|Budesonide(DB01222)|Dexamethasone(DB01234)|Flumethasone Pivalate(DB00663)|Flunisolide(DB00180)|Fluticasone Propionate(DB00588)|Hydrocortamate(DB00769)|Hydrocortisone(DB00741)|Loteprednol Etabonate(DB00873)|Methylprednisolone(DB00959)|Mifepristone(DB00834)|Mometasone(DB00764)|Prednisone(DB00635)	TCGTCTTCTCCCGCCAGAGGAG	0.436													16	50					0	0	0.004672	0	0
KCTD16	57528	broad.mit.edu	37	5	143586772	143586772	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:143586772C>T	uc003lnm.1	+	3	1124	c.495C>T	c.(493-495)TTC>TTT	p.F165F	KCTD16_uc003lnn.1_Silent_p.F165F	NM_020768	NP_065819	Q68DU8	KCD16_HUMAN	potassium channel tetramerisation domain	165						cell junction|postsynaptic membrane|presynaptic membrane|voltage-gated potassium channel complex	voltage-gated potassium channel activity			large_intestine(2)|ovary(1)|skin(1)	4		all_hematologic(541;0.118)	KIRC - Kidney renal clear cell carcinoma(527;0.00111)|Kidney(363;0.00176)			AGTGGGGTTTCATTACTGTGG	0.537													9	25					0	0	0.008291	0	0
GRXCR2	643226	broad.mit.edu	37	5	145246183	145246183	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:145246183C>T	uc003lns.1	-	2	445	c.445G>A	c.(445-447)GAA>AAA	p.E149K		NM_001080516	NP_001073985	A6NFK2	GRCR2_HUMAN	glutaredoxin, cysteine rich 2	149											0						GCCTCCTCTTCCTTCTGGAGA	0.418													14	43					0	0	0.002450	0	0
GRXCR2	643226	broad.mit.edu	37	5	145252280	145252280	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:145252280C>T	uc003lns.1	-	1	252	c.252G>A	c.(250-252)AGG>AGA	p.R84R		NM_001080516	NP_001073985	A6NFK2	GRCR2_HUMAN	glutaredoxin, cysteine rich 2	84											0						ACACACTGATCCTCTGAGCAG	0.512													8	39					0	0	0.003080	0	0
GRXCR2	643226	broad.mit.edu	37	5	145252310	145252310	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:145252310C>T	uc003lns.1	-	1	222	c.222G>A	c.(220-222)CAG>CAA	p.Q74Q		NM_001080516	NP_001073985	A6NFK2	GRCR2_HUMAN	glutaredoxin, cysteine rich 2	74											0						GGGAGCACATCTGGGGCCTGG	0.512													10	32					0	0	0.006214	0	0
SH3RF2	153769	broad.mit.edu	37	5	145442197	145442197	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:145442197C>T	uc003lnt.2	+	10	2361	c.2123C>T	c.(2122-2124)GCT>GTT	p.A708V	SH3RF2_uc011dbl.1_Missense_Mutation_p.A708V|SH3RF2_uc003lnu.2_Missense_Mutation_p.A199V|SH3RF2_uc011dbn.1_Missense_Mutation_p.A199V|SH3RF2_uc011dbo.1_Missense_Mutation_p.A165V	NM_152550	NP_689763	Q8TEC5	SH3R2_HUMAN	SH3 domain containing ring finger 2	708							ligase activity|protein phosphatase 1 binding|zinc ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			AGAAAGTCAGCTCTTGGCAAG	0.592													9	35					0	0	0.004482	0	0
RBM27	54439	broad.mit.edu	37	5	145608560	145608560	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:145608560C>T	uc003lnz.3	+	4	521	c.355C>T	c.(355-357)CCT>TCT	p.P119S	RBM27_uc003lny.2_Missense_Mutation_p.P119S	NM_018989	NP_061862	Q9P2N5	RBM27_HUMAN	RNA binding motif protein 27	119					mRNA processing	cytoplasm|nuclear speck	nucleotide binding|RNA binding|zinc ion binding			central_nervous_system(2)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			AAAGAAATATCCTAGTCCCCA	0.348													18	45					0	0	0.008871	0	0
SPINK5	11005	broad.mit.edu	37	5	147480076	147480076	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:147480076G>A	uc003lox.2	+	13	1225	c.1152G>A	c.(1150-1152)GAG>GAA	p.E384E	SPINK5_uc010jgs.1_Silent_p.E356E|SPINK5_uc010jgr.2_Silent_p.E365E|SPINK5_uc003low.2_Silent_p.E384E|SPINK5_uc003loy.2_Silent_p.E384E	NM_006846	NP_006837	Q9NQ38	ISK5_HUMAN	serine peptidase inhibitor, Kazal type 5 isoform	384	Kazal-like 6.				anagen|epithelial cell differentiation|extracellular matrix organization|hair cell differentiation|negative regulation of angiogenesis|negative regulation of immune response|regulation of T cell differentiation	cell cortex|cytosol|endoplasmic reticulum membrane|extracellular region|lamellar body|perinuclear region of cytoplasm	serine-type endopeptidase inhibitor activity			skin(2)|ovary(1)|breast(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCACCAGAGAGAACGATCCTA	0.488													15	25					0	0	0.003163	0	0
SPINK5	11005	broad.mit.edu	37	5	147486600	147486600	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:147486600G>A	uc003lox.2	+	17	1553	c.1480G>A	c.(1480-1482)GAA>AAA	p.E494K	SPINK5_uc010jgs.1_Missense_Mutation_p.E466K|SPINK5_uc010jgr.2_Missense_Mutation_p.E475K|SPINK5_uc003low.2_Missense_Mutation_p.E494K|SPINK5_uc003loy.2_Missense_Mutation_p.E494K	NM_006846	NP_006837	Q9NQ38	ISK5_HUMAN	serine peptidase inhibitor, Kazal type 5 isoform	494	Kazal-like 8.				anagen|epithelial cell differentiation|extracellular matrix organization|hair cell differentiation|negative regulation of angiogenesis|negative regulation of immune response|regulation of T cell differentiation	cell cortex|cytosol|endoplasmic reticulum membrane|extracellular region|lamellar body|perinuclear region of cytoplasm	serine-type endopeptidase inhibitor activity			skin(2)|ovary(1)|breast(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CATTTCCCAGGAAATCTGCAG	0.393													8	27					0	0	0.004482	0	0
SPINK5	11005	broad.mit.edu	37	5	147506638	147506639	+	Missense_Mutation	DNP	CT	TG	TG			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:147506638_147506639CT>TG	uc003lox.2	+	30	3033_3034	c.2960_2961CT>TG	c.(2959-2961)TCT>TTG	p.S987L	SPINK5_uc003loy.2_Missense_Mutation_p.S1017L	NM_006846	NP_006837	Q9NQ38	ISK5_HUMAN	serine peptidase inhibitor, Kazal type 5 isoform	987	Kazal-like 15.				anagen|epithelial cell differentiation|extracellular matrix organization|hair cell differentiation|negative regulation of angiogenesis|negative regulation of immune response|regulation of T cell differentiation	cell cortex|cytosol|endoplasmic reticulum membrane|extracellular region|lamellar body|perinuclear region of cytoplasm	serine-type endopeptidase inhibitor activity			skin(2)|ovary(1)|breast(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCTTTCAGTTCTCTGGTAAGGA	0.386													6	19					0	0	0.004672	0	0
ARHGEF37	389337	broad.mit.edu	37	5	149008485	149008485	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:149008485G>A	uc003lra.1	+	12	1838	c.1774G>A	c.(1774-1776)GAG>AAG	p.E592K		NM_001001669	NP_001001669	A1IGU5	ARH37_HUMAN	hypothetical protein LOC389337	592					regulation of Rho protein signal transduction	cytoplasm	Rho guanyl-nucleotide exchange factor activity				0						TCTAACACCGGAGCCCAGCCC	0.612													5	22					0	0	0.001168	0	0
CSF1R	1436	broad.mit.edu	37	5	149449566	149449566	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:149449566C>T	uc003lrl.2	-	9	1575	c.1380G>A	c.(1378-1380)CAG>CAA	p.Q460Q	CSF1R_uc011dcd.1_Silent_p.Q312Q|CSF1R_uc010jhc.2_RNA|CSF1R_uc003lrm.2_Silent_p.Q460Q	NM_005211	NP_005202	P07333	CSF1R_HUMAN	colony stimulating factor 1 receptor precursor	460	Ig-like C2-type 5.|Extracellular (Potential).				cell proliferation|multicellular organismal development|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane|receptor complex	ATP binding|cytokine binding|macrophage colony-stimulating factor receptor activity|protein homodimerization activity			haematopoietic_and_lymphoid_tissue(38)|lung(6)|central_nervous_system(3)|liver(3)|breast(2)|endometrium(1)|ovary(1)	54			KIRC - Kidney renal clear cell carcinoma(527;0.000962)|Kidney(363;0.00147)		Imatinib(DB00619)|Sunitinib(DB01268)	GGAAGGGCTCCTGGCTCAGGA	0.587													11	27					0	0	0.010729	0	0
CSF1R	1436	broad.mit.edu	37	5	149452973	149452973	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:149452973C>T	uc003lrl.2	-	6	1168	c.973G>A	c.(973-975)GTG>ATG	p.V325M	CSF1R_uc011dcd.1_Missense_Mutation_p.V177M|CSF1R_uc010jhc.2_RNA|CSF1R_uc003lrm.2_Missense_Mutation_p.V325M|CSF1R_uc011dce.1_Intron	NM_005211	NP_005202	P07333	CSF1R_HUMAN	colony stimulating factor 1 receptor precursor	325	Extracellular (Potential).|Ig-like C2-type 4.				cell proliferation|multicellular organismal development|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane|receptor complex	ATP binding|cytokine binding|macrophage colony-stimulating factor receptor activity|protein homodimerization activity			haematopoietic_and_lymphoid_tissue(38)|lung(6)|central_nervous_system(3)|liver(3)|breast(2)|endometrium(1)|ovary(1)	54			KIRC - Kidney renal clear cell carcinoma(527;0.000962)|Kidney(363;0.00147)		Imatinib(DB00619)|Sunitinib(DB01268)	TAGGCCTCCACCATGACTTTG	0.552													34	93					0	0	0.003271	0	0
PDGFRB	5159	broad.mit.edu	37	5	149499604	149499604	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:149499604C>T	uc003lro.2	-	19	3138	c.2669G>A	c.(2668-2670)GGG>GAG	p.G890E	PDGFRB_uc010jhd.2_Missense_Mutation_p.G729E	NM_002609	NP_002600	P09619	PGFRB_HUMAN	platelet-derived growth factor receptor beta	890	Cytoplasmic (Potential).|Protein kinase.				aorta morphogenesis|cardiac myofibril assembly|hemopoiesis|metanephric glomerular capillary formation|metanephric glomerular mesangial cell proliferation involved in metanephros development|peptidyl-tyrosine phosphorylation|positive regulation of calcium ion import|positive regulation of chemotaxis|positive regulation of DNA biosynthetic process|positive regulation of ERK1 and ERK2 cascade|positive regulation of MAP kinase activity|positive regulation of metanephric mesenchymal cell migration by platelet-derived growth factor receptor-beta signaling pathway|positive regulation of mitosis|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of reactive oxygen species metabolic process|positive regulation of smooth muscle cell migration|positive regulation of smooth muscle cell proliferation|protein autophosphorylation|regulation of actin cytoskeleton organization|retina vasculature development in camera-type eye|smooth muscle cell chemotaxis	apical plasma membrane|cytoplasm|integral to plasma membrane|nucleus	ATP binding|platelet activating factor receptor activity|platelet-derived growth factor beta-receptor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|vascular endothelial growth factor receptor activity			central_nervous_system(4)|lung(4)|breast(3)|stomach(2)|prostate(2)|large_intestine(1)|ovary(1)	17		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)		Becaplermin(DB00102)|Dasatinib(DB01254)|Imatinib(DB00619)|Sorafenib(DB00398)|Sunitinib(DB01268)	GAGCAGGATCCCGAAGGACCA	0.572			T	ETV6|TRIP11|HIP1|RAB5EP|H4|NIN|HCMOGT-1|PDE4DIP	MPD|AML|CMML|CML								5	24					0	0	0.000602	0	0
PDGFRB	5159	broad.mit.edu	37	5	149506146	149506146	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:149506146G>A	uc003lro.2	-	11	2080	c.1611C>T	c.(1609-1611)GCC>GCT	p.A537A	PDGFRB_uc010jhd.2_Silent_p.A376A	NM_002609	NP_002600	P09619	PGFRB_HUMAN	platelet-derived growth factor receptor beta	537	Helical; (Potential).				aorta morphogenesis|cardiac myofibril assembly|hemopoiesis|metanephric glomerular capillary formation|metanephric glomerular mesangial cell proliferation involved in metanephros development|peptidyl-tyrosine phosphorylation|positive regulation of calcium ion import|positive regulation of chemotaxis|positive regulation of DNA biosynthetic process|positive regulation of ERK1 and ERK2 cascade|positive regulation of MAP kinase activity|positive regulation of metanephric mesenchymal cell migration by platelet-derived growth factor receptor-beta signaling pathway|positive regulation of mitosis|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of reactive oxygen species metabolic process|positive regulation of smooth muscle cell migration|positive regulation of smooth muscle cell proliferation|protein autophosphorylation|regulation of actin cytoskeleton organization|retina vasculature development in camera-type eye|smooth muscle cell chemotaxis	apical plasma membrane|cytoplasm|integral to plasma membrane|nucleus	ATP binding|platelet activating factor receptor activity|platelet-derived growth factor beta-receptor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|vascular endothelial growth factor receptor activity			central_nervous_system(4)|lung(4)|breast(3)|stomach(2)|prostate(2)|large_intestine(1)|ovary(1)	17		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)		Becaplermin(DB00102)|Dasatinib(DB01254)|Imatinib(DB00619)|Sorafenib(DB00398)|Sunitinib(DB01268)	GGGCCAGGATGGCTGAGATCA	0.582			T	ETV6|TRIP11|HIP1|RAB5EP|H4|NIN|HCMOGT-1|PDE4DIP	MPD|AML|CMML|CML								12	33					0	0	0.013537	0	0
CDX1	1044	broad.mit.edu	37	5	149563133	149563133	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:149563133G>A	uc003lrq.2	+	3	784	c.688G>A	c.(688-690)GAC>AAC	p.D230N		NM_001804	NP_001795	P47902	CDX1_HUMAN	caudal type homeobox 1	230						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)	2		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GATGGCCCACGACATCACGGC	0.617													6	17					0	0	0.004482	0	0
SYNPO	11346	broad.mit.edu	37	5	150028986	150028986	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:150028986C>T	uc003lsn.2	+	3	2255	c.1881C>T	c.(1879-1881)TTC>TTT	p.F627F	SYNPO_uc003lso.3_Silent_p.F383F|SYNPO_uc003lsp.2_Silent_p.F383F	NM_001109974	NP_001103444	Q8N3V7	SYNPO_HUMAN	synaptopodin isoform B	627					positive regulation of actin filament bundle assembly|regulation of stress fiber assembly	actin cytoskeleton|cytoplasm|dendritic spine|perikaryon|postsynaptic density|postsynaptic membrane|tight junction	actin binding|protein binding			large_intestine(1)	1		Medulloblastoma(196;0.134)|all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TGTTTACTTTCGTGGAGAAGC	0.612													12	31					0	0	0.003163	0	0
ZNF300	91975	broad.mit.edu	37	5	150275445	150275445	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:150275445G>A	uc003lsy.1	-	6	1623	c.1356C>T	c.(1354-1356)CTC>CTT	p.L452L	IRGM_uc011dcl.1_Intron	NM_052860	NP_443092	Q96RE9	ZN300_HUMAN	zinc finger protein 300	452	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2		Medulloblastoma(196;0.109)|all_hematologic(541;0.131)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GATGTGTAATGAGTTCTGTCT	0.413													5	23					0	0	0.000602	0	0
TNIP1	10318	broad.mit.edu	37	5	150411874	150411874	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:150411874G>A	uc003ltf.2	-	17	2439	c.1850C>T	c.(1849-1851)CCT>CTT	p.P617L	TNIP1_uc011dcn.1_Missense_Mutation_p.P135L|TNIP1_uc010jhl.2_RNA|TNIP1_uc010jhm.2_Missense_Mutation_p.P553L|TNIP1_uc010jhn.2_Intron|TNIP1_uc011dco.1_3'UTR|TNIP1_uc003lth.2_RNA|TNIP1_uc003lti.2_Missense_Mutation_p.P617L|TNIP1_uc003ltg.2_Missense_Mutation_p.P564L|TNIP1_uc003ltj.2_Missense_Mutation_p.P617L|TNIP1_uc010jho.1_RNA|TNIP1_uc010jhq.1_Intron|TNIP1_uc010jhp.1_Missense_Mutation_p.P500L|TNIP1_uc010jhr.1_Missense_Mutation_p.P617L|TNIP1_uc003ltk.2_Missense_Mutation_p.P617L	NM_006058	NP_006049	Q15025	TNIP1_HUMAN	TNFAIP3 interacting protein 1	617	Pro-rich.				defense response|glycoprotein biosynthetic process|negative regulation of viral genome replication|translation	cytoplasm|nucleus	protein binding			ovary(1)|central_nervous_system(1)	2		Medulloblastoma(196;0.0911)|all_hematologic(541;0.207)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GGCTGTGGGAGGGTCCATCAC	0.517													6	16					0	0	0.001168	0	0
FAT2	2196	broad.mit.edu	37	5	150889622	150889622	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:150889622C>T	uc003lue.3	-	21	12032	c.12019G>A	c.(12019-12021)GGA>AGA	p.G4007R	GM2A_uc011dcs.1_Intron|FAT2_uc003lud.3_Missense_Mutation_p.G614R	NM_001447	NP_001438	Q9NYQ8	FAT2_HUMAN	FAT tumor suppressor 2 precursor	4007	EGF-like 2.|Extracellular (Potential).				epithelial cell migration|homophilic cell adhesion	cell-cell adherens junction|integral to membrane|nucleus	calcium ion binding			ovary(4)|upper_aerodigestive_tract(1)|skin(1)	6		Medulloblastoma(196;0.0912)|all_hematologic(541;0.104)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			CAGGAAGCTCCTTTGGGGGAG	0.542													18	101					0	0	0.006122	0	0
SPARC	6678	broad.mit.edu	37	5	151045993	151045993	+	Missense_Mutation	SNP	C	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:151045993C>G	uc003luh.2	-	7	687	c.663G>C	c.(661-663)GAG>GAC	p.E221D	GM2A_uc011dcs.1_Intron|SPARC_uc003lug.2_Missense_Mutation_p.E55D|SPARC_uc003lui.2_Missense_Mutation_p.E221D	NM_003118	NP_003109	P09486	SPRC_HUMAN	secreted protein, acidic, cysteine-rich	221					ossification|platelet activation|platelet degranulation|signal transduction	basement membrane|extracellular space|platelet alpha granule lumen	calcium ion binding|collagen binding			central_nervous_system(1)	1		Medulloblastoma(196;0.109)|all_hematologic(541;0.122)	Kidney(363;0.000171)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)	OV - Ovarian serous cystadenocarcinoma(192;0.00118)	Becaplermin(DB00102)	TATAGTTCTTCTCGAAGTCCC	0.557													21	47					0	0	0.014323	0	0
GLRA1	2741	broad.mit.edu	37	5	151202345	151202345	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:151202345C>T	uc003lut.2	-	9	1550	c.1263G>A	c.(1261-1263)AAG>AAA	p.K421K	GLRA1_uc003lur.2_Silent_p.K413K|GLRA1_uc003lus.2_Silent_p.K330K	NM_001146040	NP_001139512	P23415	GLRA1_HUMAN	glycine receptor, alpha 1 isoform 1 precursor	421	Cytoplasmic (Probable).				muscle contraction|negative regulation of transmission of nerve impulse|neuropeptide signaling pathway|positive regulation of acrosome reaction|regulation of membrane potential|startle response	cell junction|chloride channel complex|integral to plasma membrane|intracellular membrane-bounded organelle|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|glycine binding|protein binding|receptor activity|taurine binding|transmitter-gated ion channel activity			ovary(1)|central_nervous_system(1)	2		all_hematologic(541;0.0341)|Medulloblastoma(196;0.0912)	Kidney(363;0.000171)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Ethanol(DB00898)|Glycine(DB00145)|Halothane(DB01159)|Isoflurane(DB00753)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	TGTCGATCTTCTTGGCCCTCT	0.507													16	58					0	0	0.004990	0	0
NMUR2	56923	broad.mit.edu	37	5	151771986	151771986	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:151771986G>A	uc003luv.2	-	4	1180	c.1014C>T	c.(1012-1014)TTC>TTT	p.F338F		NM_020167	NP_064552	Q9GZQ4	NMUR2_HUMAN	neuromedin U receptor 2	338	Cytoplasmic (Potential).				activation of phospholipase A2 activity by calcium-mediated signaling|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|arachidonic acid secretion|calcium ion transport|central nervous system development|elevation of cytosolic calcium ion concentration|regulation of smooth muscle contraction	integral to membrane|plasma membrane	GTP binding|intracellular calcium activated chloride channel activity|neuromedin U receptor activity			ovary(3)|skin(2)|lung(1)|breast(1)|pancreas(1)	8		Medulloblastoma(196;0.091)|all_hematologic(541;0.103)	Kidney(363;0.000106)|KIRC - Kidney renal clear cell carcinoma(527;0.000672)			TCACATTCTGGAATGCTGCCT	0.502													24	73					0	0	0.008361	0	0
NMUR2	56923	broad.mit.edu	37	5	151784180	151784180	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:151784180C>T	uc003luv.2	-	1	661	c.495G>A	c.(493-495)AGG>AGA	p.R165R		NM_020167	NP_064552	Q9GZQ4	NMUR2_HUMAN	neuromedin U receptor 2	165	Cytoplasmic (Potential).				activation of phospholipase A2 activity by calcium-mediated signaling|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|arachidonic acid secretion|calcium ion transport|central nervous system development|elevation of cytosolic calcium ion concentration|regulation of smooth muscle contraction	integral to membrane|plasma membrane	GTP binding|intracellular calcium activated chloride channel activity|neuromedin U receptor activity			ovary(3)|skin(2)|lung(1)|breast(1)|pancreas(1)	8		Medulloblastoma(196;0.091)|all_hematologic(541;0.103)	Kidney(363;0.000106)|KIRC - Kidney renal clear cell carcinoma(527;0.000672)			TGCCGAGGATCCTGAGGGCCC	0.637													6	27					0	0	0.001168	0	0
NMUR2	56923	broad.mit.edu	37	5	151784264	151784264	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:151784264G>A	uc003luv.2	-	1	577	c.411C>T	c.(409-411)ATC>ATT	p.I137I		NM_020167	NP_064552	Q9GZQ4	NMUR2_HUMAN	neuromedin U receptor 2	137	Helical; Name=3; (Potential).				activation of phospholipase A2 activity by calcium-mediated signaling|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|arachidonic acid secretion|calcium ion transport|central nervous system development|elevation of cytosolic calcium ion concentration|regulation of smooth muscle contraction	integral to membrane|plasma membrane	GTP binding|intracellular calcium activated chloride channel activity|neuromedin U receptor activity			ovary(3)|skin(2)|lung(1)|breast(1)|pancreas(1)	8		Medulloblastoma(196;0.091)|all_hematologic(541;0.103)	Kidney(363;0.000106)|KIRC - Kidney renal clear cell carcinoma(527;0.000672)			TGACGGTGGTGATGCTGAGGA	0.627													15	44					0	0	0.002450	0	0
NMUR2	56923	broad.mit.edu	37	5	151784302	151784302	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:151784302G>A	uc003luv.2	-	1	539	c.373C>T	c.(373-375)CTC>TTC	p.L125F		NM_020167	NP_064552	Q9GZQ4	NMUR2_HUMAN	neuromedin U receptor 2	125	Helical; Name=3; (Potential).				activation of phospholipase A2 activity by calcium-mediated signaling|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|arachidonic acid secretion|calcium ion transport|central nervous system development|elevation of cytosolic calcium ion concentration|regulation of smooth muscle contraction	integral to membrane|plasma membrane	GTP binding|intracellular calcium activated chloride channel activity|neuromedin U receptor activity			ovary(3)|skin(2)|lung(1)|breast(1)|pancreas(1)	8		Medulloblastoma(196;0.091)|all_hematologic(541;0.103)	Kidney(363;0.000106)|KIRC - Kidney renal clear cell carcinoma(527;0.000672)			GTCTCAAAGAGGGCCGTCTTG	0.607													17	55					0	0	0.008871	0	0
NMUR2	56923	broad.mit.edu	37	5	151784563	151784563	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:151784563C>T	uc003luv.2	-	1	278	c.112G>A	c.(112-114)GGA>AGA	p.G38R		NM_020167	NP_064552	Q9GZQ4	NMUR2_HUMAN	neuromedin U receptor 2	38	Extracellular (Potential).				activation of phospholipase A2 activity by calcium-mediated signaling|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|arachidonic acid secretion|calcium ion transport|central nervous system development|elevation of cytosolic calcium ion concentration|regulation of smooth muscle contraction	integral to membrane|plasma membrane	GTP binding|intracellular calcium activated chloride channel activity|neuromedin U receptor activity			ovary(3)|skin(2)|lung(1)|breast(1)|pancreas(1)	8		Medulloblastoma(196;0.091)|all_hematologic(541;0.103)	Kidney(363;0.000106)|KIRC - Kidney renal clear cell carcinoma(527;0.000672)			CGCCGAGGTCCGCAGAGGAAG	0.522													15	23					0	0	0.004007	0	0
GRIA1	2890	broad.mit.edu	37	5	152873489	152873489	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:152873489G>A	uc003lva.3	+	2	449	c.84G>A	c.(82-84)GGG>GGA	p.G28G	GRIA1_uc003luy.3_Silent_p.G28G|GRIA1_uc003luz.3_5'UTR|GRIA1_uc011dcv.1_Intron|GRIA1_uc011dcw.1_Silent_p.G28G|GRIA1_uc011dcx.1_5'UTR|GRIA1_uc011dcy.1_Nonsense_Mutation_p.W38*|GRIA1_uc011dcz.1_Nonsense_Mutation_p.W38*|GRIA1_uc010jia.1_Nonsense_Mutation_p.W8*	NM_001114183	NP_001107655	P42261	GRIA1_HUMAN	glutamate receptor, ionotropic, AMPA 1 isoform	28	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|dendritic spine|endocytic vesicle membrane|endoplasmic reticulum membrane|neuronal cell body|postsynaptic density|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity|PDZ domain binding			ovary(4)|skin(2)	6		Medulloblastoma(196;0.0391)|all_neural(177;0.16)|all_hematologic(541;0.21)	Kidney(363;0.000173)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|L-Glutamic Acid(DB00142)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	TTCTCATAGGGGGATTATTTC	0.463													13	40					0	0	0.006122	0	0
GRIA1	2890	broad.mit.edu	37	5	153065888	153065888	+	Missense_Mutation	SNP	A	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:153065888A>T	uc003lva.3	+	8	1498	c.1133A>T	c.(1132-1134)AAG>ATG	p.K378M	GRIA1_uc003luy.3_Missense_Mutation_p.K378M|GRIA1_uc003luz.3_Missense_Mutation_p.K283M|GRIA1_uc011dcv.1_RNA|GRIA1_uc011dcw.1_Missense_Mutation_p.K298M|GRIA1_uc011dcx.1_Missense_Mutation_p.K309M|GRIA1_uc011dcy.1_Missense_Mutation_p.K388M|GRIA1_uc011dcz.1_Missense_Mutation_p.K388M|GRIA1_uc010jia.1_Missense_Mutation_p.K358M	NM_001114183	NP_001107655	P42261	GRIA1_HUMAN	glutamate receptor, ionotropic, AMPA 1 isoform	378	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|dendritic spine|endocytic vesicle membrane|endoplasmic reticulum membrane|neuronal cell body|postsynaptic density|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity|PDZ domain binding			ovary(4)|skin(2)	6		Medulloblastoma(196;0.0391)|all_neural(177;0.16)|all_hematologic(541;0.21)	Kidney(363;0.000173)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|L-Glutamic Acid(DB00142)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	GGCATCCGAAAGGTAAGGTCC	0.493													9	26					0	0	0.004482	0	0
GRIA1	2890	broad.mit.edu	37	5	153078597	153078597	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:153078597G>A	uc003lva.3	+	10	1781	c.1416G>A	c.(1414-1416)AAG>AAA	p.K472K	GRIA1_uc003luy.3_Silent_p.K472K|GRIA1_uc003luz.3_Silent_p.K377K|GRIA1_uc011dcv.1_RNA|GRIA1_uc011dcw.1_Silent_p.K392K|GRIA1_uc011dcx.1_Silent_p.K403K|GRIA1_uc011dcy.1_Silent_p.K482K|GRIA1_uc011dcz.1_Silent_p.K482K|GRIA1_uc010jia.1_Silent_p.K452K	NM_001114183	NP_001107655	P42261	GRIA1_HUMAN	glutamate receptor, ionotropic, AMPA 1 isoform	472	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|dendritic spine|endocytic vesicle membrane|endoplasmic reticulum membrane|neuronal cell body|postsynaptic density|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity|PDZ domain binding			ovary(4)|skin(2)	6		Medulloblastoma(196;0.0391)|all_neural(177;0.16)|all_hematologic(541;0.21)	Kidney(363;0.000173)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|L-Glutamic Acid(DB00142)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	CTGACACGAAGGCCTGGAATG	0.547													3	19					0	0	0.004672	0	0
GRIA1	2890	broad.mit.edu	37	5	153149834	153149834	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:153149834C>T	uc003lva.3	+	13	2494	c.2129C>T	c.(2128-2130)TCC>TTC	p.S710F	GRIA1_uc003luy.3_Missense_Mutation_p.S710F|GRIA1_uc003luz.3_Missense_Mutation_p.S615F|GRIA1_uc011dcv.1_RNA|GRIA1_uc011dcw.1_Missense_Mutation_p.S630F|GRIA1_uc011dcx.1_Missense_Mutation_p.S641F|GRIA1_uc011dcy.1_Missense_Mutation_p.S720F|GRIA1_uc011dcz.1_Missense_Mutation_p.S720F	NM_001114183	NP_001107655	P42261	GRIA1_HUMAN	glutamate receptor, ionotropic, AMPA 1 isoform	710	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|dendritic spine|endocytic vesicle membrane|endoplasmic reticulum membrane|neuronal cell body|postsynaptic density|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity|PDZ domain binding			ovary(4)|skin(2)	6		Medulloblastoma(196;0.0391)|all_neural(177;0.16)|all_hematologic(541;0.21)	Kidney(363;0.000173)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|L-Glutamic Acid(DB00142)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	GTGAGGAAATCCAAAGGCAAA	0.478													4	24					0	0	0.009096	0	0
GRIA1	2890	broad.mit.edu	37	5	153190776	153190777	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:153190776_153190777GG>AA	uc003lva.3	+	16	3077_3078	c.2712_2713GG>AA	c.(2710-2715)ACGGGA>ACAAGA	p.G905R	GRIA1_uc003luy.3_Missense_Mutation_p.G905R|GRIA1_uc003luz.3_Missense_Mutation_p.G810R|GRIA1_uc011dcv.1_RNA|GRIA1_uc011dcw.1_Missense_Mutation_p.G825R|GRIA1_uc011dcx.1_Missense_Mutation_p.G836R|GRIA1_uc011dcy.1_Missense_Mutation_p.G915R|GRIA1_uc011dcz.1_Missense_Mutation_p.G915R	NM_001114183	NP_001107655	P42261	GRIA1_HUMAN	glutamate receptor, ionotropic, AMPA 1 isoform	905	Cytoplasmic (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|dendritic spine|endocytic vesicle membrane|endoplasmic reticulum membrane|neuronal cell body|postsynaptic density|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity|PDZ domain binding			ovary(4)|skin(2)	6		Medulloblastoma(196;0.0391)|all_neural(177;0.16)|all_hematologic(541;0.21)	Kidney(363;0.000173)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|L-Glutamic Acid(DB00142)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	TGGGAGCCACGGGATTGTAACT	0.559													5	18					0	0	0.004672	0	0
GEMIN5	25929	broad.mit.edu	37	5	154282694	154282694	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:154282694G>A	uc003lvx.3	-	19	2757	c.2674C>T	c.(2674-2676)CAT>TAT	p.H892Y	GEMIN5_uc011ddk.1_Missense_Mutation_p.H891Y	NM_015465	NP_056280	Q8TEQ6	GEMI5_HUMAN	gemin 5	892					ncRNA metabolic process|protein complex assembly|spliceosomal snRNP assembly	Cajal body|cytosol|spliceosomal complex	protein binding|snRNA binding			skin(2)|ovary(1)	3	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.147)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			AGCCCCAGATGAAATCTTTCC	0.353													9	42					0	0	0.010729	0	0
TIMD4	91937	broad.mit.edu	37	5	156375506	156375506	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:156375506G>A	uc003lwh.2	-	5	822	c.765C>T	c.(763-765)TCC>TCT	p.S255S	TIMD4_uc010jii.2_Intron	NM_138379	NP_612388	Q96H15	TIMD4_HUMAN	T-cell immunoglobulin and mucin domain	255	Ser-rich.|Extracellular (Potential).					integral to membrane				ovary(2)	2	Renal(175;0.00488)	Medulloblastoma(196;0.0523)|all_neural(177;0.21)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			CCCAAACTTTGGACTCTTTGG	0.433													29	91					0	0	0.008361	0	0
TIMD4	91937	broad.mit.edu	37	5	156378590	156378590	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:156378590G>A	uc003lwh.2	-	3	669	c.612C>T	c.(610-612)ACC>ACT	p.T204T	TIMD4_uc010jii.2_Silent_p.T204T	NM_138379	NP_612388	Q96H15	TIMD4_HUMAN	T-cell immunoglobulin and mucin domain	204	Extracellular (Potential).|Thr-rich.					integral to membrane				ovary(2)	2	Renal(175;0.00488)	Medulloblastoma(196;0.0523)|all_neural(177;0.21)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			CCTCCGGAAGGGTGCTTGGGG	0.537													69	248					0	0	0.014410	0	0
FAM71B	153745	broad.mit.edu	37	5	156589953	156589953	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:156589953C>T	uc003lwn.2	-	2	1423	c.1323G>A	c.(1321-1323)AGG>AGA	p.R441R		NM_130899	NP_570969	Q8TC56	FA71B_HUMAN	family with sequence similarity 71, member B	441	Bipartite nuclear localization signal (Potential).					nucleus				ovary(4)|pancreas(1)|skin(1)	6	Renal(175;0.00212)	Medulloblastoma(196;0.0523)|all_neural(177;0.21)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			GAGAACTTTTCCTACTGGGAT	0.502													82	274					0	0	0.014410	0	0
ITK	3702	broad.mit.edu	37	5	156667124	156667124	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:156667124C>T	uc003lwo.1	+	10	986	c.904C>T	c.(904-906)CCT>TCT	p.P302S		NM_005546	NP_005537	Q08881	ITK_HUMAN	IL2-inducible T-cell kinase	302	SH2.				cellular defense response|intracellular signal transduction|T cell receptor signaling pathway	cytosol|plasma membrane	ATP binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(12)|ovary(8)|skin(4)|stomach(1)|central_nervous_system(1)	26	Renal(175;0.00212)	Medulloblastoma(196;0.0354)|all_neural(177;0.1)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			AAATGACAATCCTAAGCGATA	0.373			T	SYK	peripheral T-cell lymphoma								66	243					0	0	0.014410	0	0
C5orf40	408263	broad.mit.edu	37	5	156770295	156770295	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:156770295G>A	uc003lwu.2	-	2	438	c.250C>T	c.(250-252)CCT>TCT	p.P84S	CYFIP2_uc003lwq.2_Intron|CYFIP2_uc011ddn.1_Intron|CYFIP2_uc011ddo.1_Intron|CYFIP2_uc003lwr.2_Intron|CYFIP2_uc003lws.2_Intron|CYFIP2_uc003lwt.2_Intron|CYFIP2_uc011ddp.1_Intron	NM_001001343	NP_001001343	Q8TBE3	FNDC9_HUMAN	hypothetical protein LOC408263	84	Fibronectin type-III.					integral to membrane					0	Renal(175;0.00212)	Medulloblastoma(196;0.0354)|all_neural(177;0.0999)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			TGCCTGTAAGGGAAGGCAGCC	0.567											OREG0016977	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	14	43					0	0	0.002450	0	0
CYFIP2	26999	broad.mit.edu	37	5	156787375	156787375	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:156787375C>T	uc003lwq.2	+	27	3041	c.2903C>T	c.(2902-2904)TCC>TTC	p.S968F	CYFIP2_uc011ddn.1_Missense_Mutation_p.S942F|CYFIP2_uc011ddo.1_Missense_Mutation_p.S772F|CYFIP2_uc003lwr.2_Missense_Mutation_p.S968F|CYFIP2_uc003lws.2_Missense_Mutation_p.S968F|CYFIP2_uc003lwt.2_Missense_Mutation_p.S871F|CYFIP2_uc011ddp.1_Missense_Mutation_p.S702F	NM_001037333	NP_001032410	Q96F07	CYFP2_HUMAN	cytoplasmic FMR1 interacting protein 2	993					apoptosis|cell-cell adhesion	cell junction|perinuclear region of cytoplasm|synapse|synaptosome	protein binding				0	Renal(175;0.00212)	Medulloblastoma(196;0.0306)|all_neural(177;0.0897)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			GAGTATGGCTCCCCAGGTTGG	0.517													47	136					0	0	0.014410	0	0
ADAM19	8728	broad.mit.edu	37	5	156991385	156991385	+	Missense_Mutation	SNP	T	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:156991385T>A	uc003lwz.2	-	3	311	c.247A>T	c.(247-249)AAT>TAT	p.N83Y	ADAM19_uc003lww.1_5'UTR|ADAM19_uc011ddr.1_Missense_Mutation_p.N14Y	NM_033274	NP_150377	Q9H013	ADA19_HUMAN	ADAM metallopeptidase domain 19 preproprotein	83					proteolysis	integral to membrane	metalloendopeptidase activity|SH3 domain binding|zinc ion binding			ovary(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	8	Renal(175;0.00488)	Medulloblastoma(196;0.0359)|all_neural(177;0.14)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			ACTTACTCATTCTTCTCCAGG	0.468													27	52					0	0	0.010818	0	0
EBF1	1879	broad.mit.edu	37	5	158204487	158204487	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:158204487C>T	uc010jip.2	-	10	1272	c.970G>A	c.(970-972)GAA>AAA	p.E324K	EBF1_uc011ddw.1_Missense_Mutation_p.E192K|EBF1_uc011ddx.1_Missense_Mutation_p.E325K|EBF1_uc003lxl.3_Missense_Mutation_p.E293K	NM_024007	NP_076870	Q9UH73	COE1_HUMAN	early B-cell factor	324	IPT/TIG.				multicellular organismal development	nucleus	DNA binding|metal ion binding		HMGA2/EBF1(2)	soft_tissue(2)|ovary(1)|central_nervous_system(1)|pancreas(1)	5	Renal(175;0.00196)	Acute lymphoblastic leukemia(3;2.99e-06)|all_hematologic(3;0.000772)|Medulloblastoma(196;0.037)|all_neural(177;0.143)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			AGTGTGACTTCCACAACACCA	0.483			T	HMGA2	lipoma								14	52					0	0	0.003163	0	0
ADRA1B	147	broad.mit.edu	37	5	159344660	159344660	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:159344660G>A	uc003lxt.1	+	1	921	c.748G>A	c.(748-750)GAG>AAG	p.E250K		NM_000679	NP_000670	P35368	ADA1B_HUMAN	alpha-1B-adrenergic receptor	250	Cytoplasmic (By similarity).				cell proliferation|cell-cell signaling|G-protein signaling, coupled to cAMP nucleotide second messenger|intracellular protein kinase cascade	integral to plasma membrane	alpha1-adrenergic receptor activity			lung(1)	1	Renal(175;0.00196)	Medulloblastoma(196;0.0354)|all_neural(177;0.138)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)		Alfuzosin(DB00346)|Bethanidine(DB00217)|Dapiprazole(DB00298)|Debrisoquin(DB04840)|Dextroamphetamine(DB01576)|Doxazosin(DB00590)|Guanadrel Sulfate(DB00226)|Guanethidine(DB01170)|Guanfacine(DB01018)|Labetalol(DB00598)|Lisdexamfetamine(DB01255)|Methamphetamine(DB01577)|Methotrimeprazine(DB01403)|Methoxamine(DB00723)|Midodrine(DB00211)|Modafinil(DB00745)|Nefazodone(DB01149)|Norepinephrine(DB00368)|Olanzapine(DB00334)|Phendimetrazine(DB01579)|Phenylephrine(DB00388)|Prazosin(DB00457)|Promazine(DB00420)|Propericiazine(DB01608)|Propiomazine(DB00777)|Quetiapine(DB01224)|Risperidone(DB00734)|Sertindole(DB06144)|Tamsulosin(DB00706)|Terazosin(DB01162)|Trazodone(DB00656)	CAACTCCAAGGAGCTGACCCT	0.517													8	38					0	0	0.004482	0	0
PWWP2A	114825	broad.mit.edu	37	5	159520234	159520234	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:159520234G>A	uc011ded.1	-	2	1480	c.1423C>T	c.(1423-1425)CGT>TGT	p.R475C	PWWP2A_uc003lxv.3_Missense_Mutation_p.R475C|PWWP2A_uc011dec.1_Missense_Mutation_p.R475C	NM_001130864	NP_001124336	Q96N64	PWP2A_HUMAN	PWWP domain containing 2A isoform b	475											0	Renal(175;0.00196)	Medulloblastoma(196;0.0354)|all_neural(177;0.138)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			GGTTTTAAACGAACCCGGGGT	0.458													10	15					0	0	0.008291	0	0
PWWP2A	114825	broad.mit.edu	37	5	159520276	159520276	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:159520276G>A	uc011ded.1	-	2	1438	c.1381C>T	c.(1381-1383)CGA>TGA	p.R461*	PWWP2A_uc003lxv.3_Nonsense_Mutation_p.R461*|PWWP2A_uc011dec.1_Nonsense_Mutation_p.R461*	NM_001130864	NP_001124336	Q96N64	PWP2A_HUMAN	PWWP domain containing 2A isoform b	461											0	Renal(175;0.00196)	Medulloblastoma(196;0.0354)|all_neural(177;0.138)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			TTCTGATATCGACGTGTGAAA	0.418													6	23					0	0	0.001984	0	0
CCNJL	79616	broad.mit.edu	37	5	159686609	159686609	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:159686609G>A	uc003lyb.1	-	5	846	c.594C>T	c.(592-594)TTC>TTT	p.F198F	CCNJL_uc011dee.1_Silent_p.F150F|CCNJL_uc003lyc.1_RNA|CCNJL_uc011def.1_Silent_p.F150F	NM_024565	NP_078841	Q8IV13	CCNJL_HUMAN	cyclin J-like	198						nucleus					0	Renal(175;0.00196)	Medulloblastoma(196;0.0354)|all_neural(177;0.116)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			AGTAGTCCAGGAAGTGGGCAG	0.622													6	34					0	0	0.001984	0	0
ATP10B	23120	broad.mit.edu	37	5	160061514	160061514	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:160061514C>T	uc003lym.1	-	12	2075	c.1228G>A	c.(1228-1230)GAT>AAT	p.D410N	ATP10B_uc003lyp.2_Missense_Mutation_p.D410N|ATP10B_uc011deg.1_Missense_Mutation_p.D454N|ATP10B_uc003lyn.2_5'UTR|ATP10B_uc003lyo.2_Missense_Mutation_p.D382N	NM_025153	NP_079429	O94823	AT10B_HUMAN	ATPase, class V, type 10B	410	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5	Renal(175;0.00196)	Medulloblastoma(196;0.0377)|all_neural(177;0.121)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			ATGGATAAATCGGTCTCTTCA	0.493													28	74					0	0	0.013726	0	0
Unknown	0	broad.mit.edu	37	5	164028204	164028204	+	RNA	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:164028204C>T	uc003lzn.2	+	3		c.382C>T								Homo sapiens, clone IMAGE:4479080, mRNA, partial cds.																		GATCATATCCCGCAGGTGCGT	0.587													3	3					0	0	0.009096	0	0
ODZ2	57451	broad.mit.edu	37	5	167489213	167489213	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:167489213G>A	uc010jjd.2	+	7	1458	c.1458G>A	c.(1456-1458)GGG>GGA	p.G486G	ODZ2_uc003lzq.2_Silent_p.G365G|ODZ2_uc003lzr.3_Silent_p.G254G	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		TCTCCCTCGGGAAGGACGCTC	0.443													19	43					0	0	0.012319	0	0
ODZ2	57451	broad.mit.edu	37	5	167517634	167517634	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:167517634C>T	uc010jjd.2	+	8	1571	c.1571C>T	c.(1570-1572)CCC>CTC	p.P524L	ODZ2_uc003lzq.2_Missense_Mutation_p.P403L|ODZ2_uc003lzr.3_Missense_Mutation_p.P292L|uc003lzs.1_Intron	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		GTTGAGTCTCCCAGGGAACGC	0.522													7	57					0	0	0.003080	0	0
RARS	5917	broad.mit.edu	37	5	167915660	167915660	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:167915660C>T	uc003lzx.2	+	2	140	c.99C>T	c.(97-99)GGC>GGT	p.G33G	RARS_uc011deo.1_5'UTR	NM_002887	NP_002878	P54136	SYRC_HUMAN	arginyl-tRNA synthetase	33	Could be involved in the assembly of the multisynthetase complex.				arginyl-tRNA aminoacylation	cytosol|nucleus|soluble fraction	arginine-tRNA ligase activity|ATP binding|protein binding			ovary(2)|skin(1)	3	Renal(175;0.000159)|Lung NSC(126;0.0875)|all_lung(126;0.166)	Medulloblastoma(196;0.0208)|all_neural(177;0.0227)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0693)|Epithelial(171;0.131)|OV - Ovarian serous cystadenocarcinoma(192;0.156)		AAAACTGTGGCTGTTTAGGAG	0.363													8	23					0	0	0.003080	0	0
RARS	5917	broad.mit.edu	37	5	167944974	167944974	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:167944974C>T	uc003lzx.2	+	14	1821	c.1780C>T	c.(1780-1782)CTC>TTC	p.L594F	RARS_uc011deo.1_Missense_Mutation_p.L388F	NM_002887	NP_002878	P54136	SYRC_HUMAN	arginyl-tRNA synthetase	594					arginyl-tRNA aminoacylation	cytosol|nucleus|soluble fraction	arginine-tRNA ligase activity|ATP binding|protein binding			ovary(2)|skin(1)	3	Renal(175;0.000159)|Lung NSC(126;0.0875)|all_lung(126;0.166)	Medulloblastoma(196;0.0208)|all_neural(177;0.0227)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0693)|Epithelial(171;0.131)|OV - Ovarian serous cystadenocarcinoma(192;0.156)		TGACTTATTTCTCCACACTCT	0.408													10	27					0	0	0.006214	0	0
SLIT3	6586	broad.mit.edu	37	5	168123338	168123338	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:168123338C>T	uc003mab.2	-	28	3461	c.3041G>A	c.(3040-3042)GGG>GAG	p.G1014E	SLIT3_uc010jjg.2_Missense_Mutation_p.G1021E	NM_003062	NP_003053	O75094	SLIT3_HUMAN	slit homolog 3 precursor	1014	EGF-like 3.				apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			GTTGTTGATCCCGTCCACGCA	0.532													20	41					0	0	0.010504	0	0
SLIT3	6586	broad.mit.edu	37	5	168135005	168135005	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:168135005G>A	uc003mab.2	-	26	3240	c.2820C>T	c.(2818-2820)CGC>CGT	p.R940R	SLIT3_uc010jjg.2_Silent_p.R947R	NM_003062	NP_003053	O75094	SLIT3_HUMAN	slit homolog 3 precursor	940	EGF-like 1.				apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			GGCAGGCACAGCGGTACAGCT	0.617													8	22					0	0	0.003080	0	0
SLIT3	6586	broad.mit.edu	37	5	168151456	168151456	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:168151456G>A	uc003mab.2	-	21	2724	c.2304C>T	c.(2302-2304)CCC>CCT	p.P768P	SLIT3_uc010jjg.2_Silent_p.P768P	NM_003062	NP_003053	O75094	SLIT3_HUMAN	slit homolog 3 precursor	768	LRR 17.				apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			ACAGCTCTCTGGGCACGGCTG	0.483													14	31					0	0	0.004990	0	0
SLIT3	6586	broad.mit.edu	37	5	168189647	168189647	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:168189647G>A	uc003mab.2	-	15	1927	c.1507C>T	c.(1507-1509)CTC>TTC	p.L503F	SLIT3_uc010jjg.2_Missense_Mutation_p.L503F	NM_003062	NP_003053	O75094	SLIT3_HUMAN	slit homolog 3 precursor	503	LRRNT 3.				apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			GGGCACACGAGGTCCATGAAG	0.617													17	85					0	0	0.007413	0	0
SLIT3	6586	broad.mit.edu	37	5	168678442	168678442	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:168678442G>A	uc003mab.2	-	2	639	c.219C>T	c.(217-219)ATC>ATT	p.I73I	SLIT3_uc010jjg.2_Silent_p.I73I|SLIT3_uc010jji.2_Silent_p.I73I	NM_003062	NP_003053	O75094	SLIT3_HUMAN	slit homolog 3 precursor	73	LRR 1.				apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			TGATCCTGGTGATATTATTTC	0.438													10	51					0	0	0.010729	0	0
DOCK2	1794	broad.mit.edu	37	5	169461457	169461457	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:169461457C>T	uc003maf.2	+	35	3602	c.3522C>T	c.(3520-3522)TTC>TTT	p.F1174F	DOCK2_uc011der.1_RNA|DOCK2_uc010jjm.2_Silent_p.F666F	NM_004946	NP_004937	Q92608	DOCK2_HUMAN	dedicator of cytokinesis 2	1174	DHR-2.|Interaction with CRKL.				actin cytoskeleton organization|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|endomembrane system|membrane	electron carrier activity|GTP binding|GTPase binding|heme binding|Rac guanyl-nucleotide exchange factor activity|T cell receptor binding			ovary(5)|pancreas(2)	7	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			TGGAGAACTTCGTGAACCTGG	0.572													13	32					0	0	0.013537	0	0
DOCK2	1794	broad.mit.edu	37	5	169474608	169474608	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:169474608C>T	uc003maf.2	+	40	4141	c.4061C>T	c.(4060-4062)TCC>TTC	p.S1354F	DOCK2_uc011der.1_RNA|DOCK2_uc010jjm.2_Missense_Mutation_p.S846F	NM_004946	NP_004937	Q92608	DOCK2_HUMAN	dedicator of cytokinesis 2	1354	DHR-2.|Interaction with CRKL.				actin cytoskeleton organization|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|endomembrane system|membrane	electron carrier activity|GTP binding|GTPase binding|heme binding|Rac guanyl-nucleotide exchange factor activity|T cell receptor binding			ovary(5)|pancreas(2)	7	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			GGATTCCCCTCCTTCCTGCGG	0.532													11	21					0	0	0.010729	0	0
DOCK2	1794	broad.mit.edu	37	5	169477382	169477382	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:169477382G>A	uc003maf.2	+	41	4274	c.4194G>A	c.(4192-4194)GTG>GTA	p.V1398V	DOCK2_uc011der.1_RNA|DOCK2_uc010jjm.2_Silent_p.V890V	NM_004946	NP_004937	Q92608	DOCK2_HUMAN	dedicator of cytokinesis 2	1398	DHR-2.|Interaction with CRKL.				actin cytoskeleton organization|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|endomembrane system|membrane	electron carrier activity|GTP binding|GTPase binding|heme binding|Rac guanyl-nucleotide exchange factor activity|T cell receptor binding			ovary(5)|pancreas(2)	7	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			GAGATGATGTGAAGAATGCCC	0.562													12	47					0	0	0.001855	0	0
KCNMB1	3779	broad.mit.edu	37	5	169805759	169805759	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:169805759G>A	uc003maq.1	-	4	925	c.525C>T	c.(523-525)ATC>ATT	p.I175I	KCNIP1_uc003map.2_Intron	NM_004137	NP_004128	Q16558	KCMB1_HUMAN	potassium large conductance calcium-activated	175	Helical; Name=2; (Potential).				platelet activation|synaptic transmission		calcium-activated potassium channel activity|potassium channel regulator activity			ovary(2)	2	Renal(175;0.000159)|Lung NSC(126;0.0165)|all_lung(126;0.026)	Medulloblastoma(196;0.0109)|all_neural(177;0.0146)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.175)		TCACCATGGCGATAATGAGGA	0.607													11	61					0	0	0.010729	0	0
GABRP	2568	broad.mit.edu	37	5	170222290	170222290	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:170222290C>T	uc003mau.2	+	5	517	c.319C>T	c.(319-321)CTG>TTG	p.L107L	GABRP_uc011dev.1_Silent_p.L107L	NM_014211	NP_055026	O00591	GBRP_HUMAN	gamma-aminobutyric acid (GABA) A receptor, pi	107	Extracellular (Potential).					cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			breast(1)	1	Renal(175;0.000159)|Lung NSC(126;0.0122)|all_lung(126;0.0193)	Medulloblastoma(196;0.0109)|all_neural(177;0.0298)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			GAGCTTCACTCTGGATGCCCG	0.557													26	86					0	0	0.004656	0	0
GABRP	2568	broad.mit.edu	37	5	170235728	170235728	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:170235728C>T	uc003mau.2	+	8	1002	c.804C>T	c.(802-804)CTC>CTT	p.L268L	GABRP_uc011dev.1_Silent_p.L268L	NM_014211	NP_055026	O00591	GBRP_HUMAN	gamma-aminobutyric acid (GABA) A receptor, pi	268						cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			breast(1)	1	Renal(175;0.000159)|Lung NSC(126;0.0122)|all_lung(126;0.0193)	Medulloblastoma(196;0.0109)|all_neural(177;0.0298)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			GGATCTCTCTCGATTCAGTCC	0.423													4	34					0	0	0.009096	0	0
SH3PXD2B	285590	broad.mit.edu	37	5	171766262	171766262	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:171766262G>A	uc003mbr.2	-	13	2018	c.1847C>T	c.(1846-1848)TCC>TTC	p.S616F		NM_001017995	NP_001017995	A1X283	SPD2B_HUMAN	SH3 and PX domains 2B	616					adipose tissue development|bone development|cell communication|cell differentiation|eye development|heart development|podosome assembly	cell junction|cell projection|cytoplasm|podosome	phosphatidylinositol-3,5-bisphosphate binding|phosphatidylinositol-3-phosphate binding|phosphatidylinositol-5-phosphate binding|SH2 domain binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.011)|all_lung(126;0.0175)	Medulloblastoma(196;0.0207)|all_neural(177;0.0625)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			TTTGGATTTGGAGATGGGCCG	0.537													18	33					0	0	0.006122	0	0
DRD1	1812	broad.mit.edu	37	5	174869920	174869920	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:174869920G>A	uc003mcz.2	-	2	1128	c.183C>T	c.(181-183)TTC>TTT	p.F61F		NM_000794	NP_000785	P21728	DRD1_HUMAN	dopamine receptor D1	61	Helical; Name=2; (Potential).				activation of adenylate cyclase activity by dopamine receptor signaling pathway|activation of phospholipase C activity by dopamine receptor signaling pathway|adult walking behavior|cerebral cortex GABAergic interneuron migration|elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger|mating behavior|positive regulation of cAMP biosynthetic process|positive regulation of cell migration|positive regulation of potassium ion transport|positive regulation of release of sequestered calcium ion into cytosol|positive regulation of synaptic transmission, glutamatergic|prepulse inhibition|response to drug|synapse assembly|visual learning	endoplasmic reticulum membrane|membrane fraction	protein binding			ovary(2)|skin(1)	3	all_cancers(89;0.00895)|Renal(175;0.000159)|Lung NSC(126;0.00625)|all_lung(126;0.0104)	Medulloblastoma(196;0.0208)|all_neural(177;0.0277)|all_hematologic(541;0.214)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000183)		Acetophenazine(DB01063)|Amantadine(DB00915)|Apomorphine(DB00714)|Carphenazine(DB01038)|Chlorprothixene(DB01239)|Clozapine(DB00363)|Cocaine(DB00907)|Dopamine(DB00988)|Fenoldopam(DB00800)|Flupenthixol(DB00875)|Fluphenazine(DB00623)|Haloperidol(DB00502)|Levodopa(DB01235)|Lisuride(DB00589)|Loxapine(DB00408)|Methylergonovine(DB00353)|Minaprine(DB00805)|Olanzapine(DB00334)|Pegademase bovine(DB00061)|Pergolide(DB01186)|Perphenazine(DB00850)|Prochlorperazine(DB00433)|Promazine(DB00420)|Propiomazine(DB00777)|Quetiapine(DB01224)|Thiethylperazine(DB00372)|Thioridazine(DB00679)|Triflupromazine(DB00508)|Zuclopenthixol(DB01624)	AGATGACAAAGAAGTTGGTCA	0.582													5	22					0	0	0.000602	0	0
UNC5A	90249	broad.mit.edu	37	5	176306320	176306320	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:176306320T>C	uc003mey.2	+	14	2386	c.2194T>C	c.(2194-2196)TTT>CTT	p.F732L		NM_133369	NP_588610	Q6ZN44	UNC5A_HUMAN	netrin receptor Unc5h1 precursor	732	Cytoplasmic (Potential).				apoptosis|axon guidance|regulation of apoptosis	integral to membrane|plasma membrane				skin(1)	1	all_cancers(89;0.000119)|Renal(175;0.000269)|Lung NSC(126;0.00696)|all_lung(126;0.0115)	Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GGACACAAGGTTTGCTGAGCT	0.622													28	70					0	0	0.006320	0	0
NSD1	64324	broad.mit.edu	37	5	176637091	176637091	+	Missense_Mutation	SNP	C	T	T	rs148196686		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:176637091C>T	uc003mfr.3	+	5	1829	c.1691C>T	c.(1690-1692)GCC>GTC	p.A564V	NSD1_uc003mft.3_Missense_Mutation_p.A295V|NSD1_uc003mfs.1_Missense_Mutation_p.A461V|NSD1_uc011dfx.1_Missense_Mutation_p.A212V	NM_022455	NP_071900	Q96L73	NSD1_HUMAN	nuclear receptor binding SET domain protein 1	564					negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleus	androgen receptor binding|chromatin binding|estrogen receptor binding|histone methyltransferase activity (H3-K36 specific)|histone methyltransferase activity (H4-K20 specific)|ligand-dependent nuclear receptor binding|retinoid X receptor binding|thyroid hormone receptor binding|transcription corepressor activity|zinc ion binding			ovary(2)|kidney(1)	3	all_cancers(89;1.57e-05)|Renal(175;0.000269)|Lung NSC(126;0.00111)|all_lung(126;0.002)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)|Epithelial(233;0.198)	Kidney(146;0.235)		TCCAACACTGCCCCAGGAAGT	0.443			T	NUP98	AML		Sotos Syndrome		Beckwith-Wiedemann_syndrome|Sotos_syndrome|Weaver_syndrome	HNSCC(47;0.14)			12	26					0	0	0.010729	0	0
NSD1	64324	broad.mit.edu	37	5	176638012	176638012	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:176638012C>T	uc003mfr.3	+	5	2750	c.2612C>T	c.(2611-2613)TCC>TTC	p.S871F	NSD1_uc003mft.3_Missense_Mutation_p.S602F|NSD1_uc003mfs.1_Missense_Mutation_p.S768F|NSD1_uc011dfx.1_Missense_Mutation_p.S519F	NM_022455	NP_071900	Q96L73	NSD1_HUMAN	nuclear receptor binding SET domain protein 1	871					negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleus	androgen receptor binding|chromatin binding|estrogen receptor binding|histone methyltransferase activity (H3-K36 specific)|histone methyltransferase activity (H4-K20 specific)|ligand-dependent nuclear receptor binding|retinoid X receptor binding|thyroid hormone receptor binding|transcription corepressor activity|zinc ion binding			ovary(2)|kidney(1)	3	all_cancers(89;1.57e-05)|Renal(175;0.000269)|Lung NSC(126;0.00111)|all_lung(126;0.002)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)|Epithelial(233;0.198)	Kidney(146;0.235)		TCTTACAGATCCTTAGGTGAG	0.403			T	NUP98	AML		Sotos Syndrome		Beckwith-Wiedemann_syndrome|Sotos_syndrome|Weaver_syndrome	HNSCC(47;0.14)			17	37					0	0	0.004990	0	0
ZNF454	285676	broad.mit.edu	37	5	178392789	178392789	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:178392789C>T	uc003mjo.1	+	5	1655	c.1384C>T	c.(1384-1386)CAT>TAT	p.H462Y	ZNF454_uc010jkz.1_Missense_Mutation_p.H462Y	NM_182594	NP_872400	Q8N9F8	ZN454_HUMAN	zinc finger protein 454	462	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|lung(1)	3	all_cancers(89;0.000904)|Renal(175;0.000159)|all_epithelial(37;0.000167)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	all_cancers(40;0.225)|all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.234)		TAAGAGAATTCATACTAGGGA	0.398													14	44					0	0	0.002450	0	0
ADAMTS2	9509	broad.mit.edu	37	5	178541003	178541003	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:178541003G>A	uc003mjw.2	-	22	3501	c.3501C>T	c.(3499-3501)ATC>ATT	p.I1167I	uc003mjv.3_5'Flank	NM_014244	NP_055059	O95450	ATS2_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1167					collagen catabolic process	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4	all_cancers(89;0.000456)|all_epithelial(37;0.000138)|Renal(175;0.000159)|Lung NSC(126;0.00184)|all_lung(126;0.00326)	all_cancers(40;0.00604)|all_neural(177;0.00411)|Medulloblastoma(196;0.00508)|Lung NSC(249;0.0569)|all_lung(500;0.129)|all_hematologic(541;0.211)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	GBM - Glioblastoma multiforme(465;0.0473)		CCAGGCCATGGATTTTGTAGG	0.527													20	63					0	0	0.008871	0	0
TBC1D9B	23061	broad.mit.edu	37	5	179318397	179318397	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:179318397G>A	uc003mlh.2	-	6	1063	c.1026C>T	c.(1024-1026)CTC>CTT	p.L342L	TBC1D9B_uc003mli.2_Silent_p.L342L|TBC1D9B_uc003mlj.2_Silent_p.L342L	NM_198868	NP_942568	Q66K14	TBC9B_HUMAN	TBC1 domain family, member 9B (with GRAM domain)	342	GRAM 2.					integral to membrane|intracellular	calcium ion binding|Rab GTPase activator activity			breast(1)|skin(1)	2	all_cancers(89;0.000197)|all_epithelial(37;6.84e-05)|Renal(175;0.000159)|Lung NSC(126;0.00136)|all_lung(126;0.00243)	all_cancers(40;0.0236)|Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GGGGTATGATGAGGTGGCAAG	0.597													11	45					0	0	0.010729	0	0
RASGEF1C	255426	broad.mit.edu	37	5	179555543	179555543	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:179555543C>T	uc003mlq.2	-	4	803	c.506G>A	c.(505-507)GGG>GAG	p.G169E	RASGEF1C_uc003mlr.2_Missense_Mutation_p.G169E|RASGEF1C_uc003mlp.3_Missense_Mutation_p.G18E	NM_175062	NP_778232	Q8N431	RGF1C_HUMAN	RasGEF domain family, member 1C	169					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	intracellular	guanyl-nucleotide exchange factor activity			ovary(1)	1	all_cancers(89;3.44e-05)|all_epithelial(37;1.22e-05)|Renal(175;0.000269)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.137)	all_cancers(40;0.0242)|Medulloblastoma(196;0.00498)|all_neural(177;0.0137)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			ACCTTCTGGCCCCTGGCGCAG	0.627													9	25					0	0	0.004482	0	0
RASGEF1C	255426	broad.mit.edu	37	5	179564662	179564662	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:179564662G>A	uc003mlq.2	-	2	525	c.228C>T	c.(226-228)CCC>CCT	p.P76P	RASGEF1C_uc003mlr.2_Silent_p.P76P|RASGEF1C_uc003mlp.3_5'Flank	NM_175062	NP_778232	Q8N431	RGF1C_HUMAN	RasGEF domain family, member 1C	76	N-terminal Ras-GEF.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	intracellular	guanyl-nucleotide exchange factor activity			ovary(1)	1	all_cancers(89;3.44e-05)|all_epithelial(37;1.22e-05)|Renal(175;0.000269)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.137)	all_cancers(40;0.0242)|Medulloblastoma(196;0.00498)|all_neural(177;0.0137)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GGAGCTCCCGGGGCTCGATGA	0.652													3	19					0	0	0.009096	0	0
OR2Y1	134083	broad.mit.edu	37	5	180166517	180166517	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:180166517G>A	uc003mmf.1	-	1	542	c.542C>T	c.(541-543)CCT>CTT	p.P181L		NM_001001657	NP_001001657	Q8NGV0	OR2Y1_HUMAN	olfactory receptor, family 2, subfamily Y,	181	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_cancers(89;1.25e-05)|all_epithelial(37;4.36e-06)|Renal(175;0.000159)|Lung NSC(126;0.00317)|all_lung(126;0.0041)|Breast(19;0.114)	all_cancers(40;0.0834)|Medulloblastoma(196;0.0392)|all_neural(177;0.0529)|all_hematologic(541;0.191)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CAGAAATACAGGCATCTCACA	0.522													10	20					0	0	0.010729	0	0
OR2Y1	134083	broad.mit.edu	37	5	180166600	180166600	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:180166600G>A	uc003mmf.1	-	1	459	c.459C>T	c.(457-459)TTC>TTT	p.F153F		NM_001001657	NP_001001657	Q8NGV0	OR2Y1_HUMAN	olfactory receptor, family 2, subfamily Y,	153	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_cancers(89;1.25e-05)|all_epithelial(37;4.36e-06)|Renal(175;0.000159)|Lung NSC(126;0.00317)|all_lung(126;0.0041)|Breast(19;0.114)	all_cancers(40;0.0834)|Medulloblastoma(196;0.0392)|all_neural(177;0.0529)|all_hematologic(541;0.191)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GAGAGTTCACGAAACCCGCAC	0.552													4	14					0	0	0.009096	0	0
OR2Y1	134083	broad.mit.edu	37	5	180166621	180166621	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:180166621G>A	uc003mmf.1	-	1	438	c.438C>T	c.(436-438)ATC>ATT	p.I146I		NM_001001657	NP_001001657	Q8NGV0	OR2Y1_HUMAN	olfactory receptor, family 2, subfamily Y,	146	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_cancers(89;1.25e-05)|all_epithelial(37;4.36e-06)|Renal(175;0.000159)|Lung NSC(126;0.00317)|all_lung(126;0.0041)|Breast(19;0.114)	all_cancers(40;0.0834)|Medulloblastoma(196;0.0392)|all_neural(177;0.0529)|all_hematologic(541;0.191)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CCCAGGAGGCGATAGCCAGGG	0.572													7	15					0	0	0.004482	0	0
BTNL8	79908	broad.mit.edu	37	5	180338436	180338436	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:180338436G>A	uc003mmp.2	+	3	729	c.495G>A	c.(493-495)GCG>GCA	p.A165A	BTNL8_uc003mmq.2_Silent_p.A165A|BTNL8_uc011dhg.1_Silent_p.A40A|BTNL8_uc010jll.2_Silent_p.A165A|BTNL8_uc010jlm.2_Silent_p.A49A|BTNL8_uc011dhh.1_5'UTR	NM_001040462	NP_001035552	Q6UX41	BTNL8_HUMAN	butyrophilin-like 8 isoform 2 precursor	165	Ig-like V-type 2.|Extracellular (Potential).					integral to membrane				upper_aerodigestive_tract(1)|skin(1)	2	all_cancers(89;3.37e-05)|all_epithelial(37;3.77e-06)|Renal(175;0.000159)|Lung NSC(126;0.00211)|all_lung(126;0.00371)|Breast(19;0.114)	all_cancers(40;0.0801)|Medulloblastoma(196;0.0392)|all_neural(177;0.0529)|all_hematologic(541;0.191)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GGCCCACAGCGAAGTGGAAAG	0.537													35	121					0	0	0.003755	0	0
BTNL8	79908	broad.mit.edu	37	5	180338455	180338455	+	Missense_Mutation	SNP	G	A	A	rs144589226		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:180338455G>A	uc003mmp.2	+	3	748	c.514G>A	c.(514-516)GGA>AGA	p.G172R	BTNL8_uc003mmq.2_Missense_Mutation_p.G172R|BTNL8_uc011dhg.1_Missense_Mutation_p.G47R|BTNL8_uc010jll.2_Missense_Mutation_p.G172R|BTNL8_uc010jlm.2_Missense_Mutation_p.G56R|BTNL8_uc011dhh.1_5'UTR	NM_001040462	NP_001035552	Q6UX41	BTNL8_HUMAN	butyrophilin-like 8 isoform 2 precursor	172	Ig-like V-type 2.|Extracellular (Potential).					integral to membrane				upper_aerodigestive_tract(1)|skin(1)	2	all_cancers(89;3.37e-05)|all_epithelial(37;3.77e-06)|Renal(175;0.000159)|Lung NSC(126;0.00211)|all_lung(126;0.00371)|Breast(19;0.114)	all_cancers(40;0.0801)|Medulloblastoma(196;0.0392)|all_neural(177;0.0529)|all_hematologic(541;0.191)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			AGGTCCACAAGGACAGGATTT	0.532													27	90					0	0	0.007291	0	0
BTNL3	10917	broad.mit.edu	37	5	180432455	180432455	+	Missense_Mutation	SNP	G	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr5:180432455G>C	uc003mmr.2	+	8	1112	c.984G>C	c.(982-984)AAG>AAC	p.K328N	BTNL3_uc010jlp.2_Missense_Mutation_p.K113N	NM_197975	NP_932079	Q6UXE8	BTNL3_HUMAN	butyrophilin-like 3 precursor	328	B30.2/SPRY.|Cytoplasmic (Potential).				lipid metabolic process	integral to membrane					0	all_cancers(89;3.37e-05)|all_epithelial(37;3.77e-06)|Renal(175;0.000159)|Lung NSC(126;0.00211)|all_lung(126;0.00371)|Breast(19;0.114)	all_cancers(40;0.00336)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)|Ovarian(839;0.238)|all_lung(500;0.248)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000272)			TTACAAGGAAGAGTGTGGTGG	0.517													15	52					0	0	0.004007	0	0
MYLK4	340156	broad.mit.edu	37	6	2683362	2683362	+	Missense_Mutation	SNP	C	T	T	rs147055313	byFrequency	TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:2683362C>T	uc003mty.3	-	7	877	c.580G>A	c.(580-582)GAT>AAT	p.D194N		NM_001012418	NP_001012418	Q86YV6	MYLK4_HUMAN	myosin light chain kinase family, member 4	194	Protein kinase.						ATP binding|protein serine/threonine kinase activity			breast(3)|ovary(1)	4	Ovarian(93;0.0412)	all_hematologic(90;0.0897)				TAGCTCTCATCGATGATGCGG	0.488													19	34					0	0	0.008871	0	0
SERPINB9	5272	broad.mit.edu	37	6	2890586	2890586	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:2890586G>A	uc003mug.2	-	7	1063	c.942C>T	c.(940-942)TTC>TTT	p.F314F	uc003mue.2_Intron|SERPINB9_uc003muf.2_Silent_p.F117F	NM_004155	NP_004146	P50453	SPB9_HUMAN	serpin peptidase inhibitor, clade B, member 9	314					anti-apoptosis|cellular response to estrogen stimulus|immune response|mast cell mediated immunity|regulation of proteolysis	cytosol|extracellular space|nucleus	caspase inhibitor activity|protease binding|serine-type endopeptidase inhibitor activity				0	Ovarian(93;0.0412)	all_hematologic(90;0.108)				TCTTGTGCACGAACTTGGACA	0.537													10	73					0	0	0.008291	0	0
SERPINB6	5269	broad.mit.edu	37	6	2948624	2948624	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:2948624G>A	uc003muk.2	-	6	3034	c.1039C>T	c.(1039-1041)CCC>TCC	p.P347S	SERPINB6_uc003mui.2_Missense_Mutation_p.P230S|SERPINB6_uc003muj.2_RNA|SERPINB6_uc003mul.2_Missense_Mutation_p.P347S|SERPINB6_uc003mum.2_Missense_Mutation_p.P347S|SERPINB6_uc003mun.2_Missense_Mutation_p.P347S|SERPINB6_uc003muo.2_Missense_Mutation_p.P347S	NM_004568	NP_004559	P35237	SPB6_HUMAN	serine (or cysteine) proteinase inhibitor, clade	347					regulation of proteolysis	centrosome|cytosol|protein complex	protease binding|serine-type endopeptidase inhibitor activity				0	Ovarian(93;0.0412)	all_hematologic(90;0.0895)			Drotrecogin alfa(DB00055)	CAGAAGCGGGGGACGAATCTG	0.587													8	46					0	0	0.004482	0	0
F13A1	2162	broad.mit.edu	37	6	6196109	6196109	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:6196109C>T	uc003mwv.2	-	10	1349	c.1226G>A	c.(1225-1227)CGG>CAG	p.R409Q	F13A1_uc011dib.1_Missense_Mutation_p.R346Q	NM_000129	NP_000120	P00488	F13A_HUMAN	coagulation factor XIII A1 subunit precursor	409					peptide cross-linking|platelet activation|platelet degranulation	extracellular region|platelet alpha granule lumen	acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|pancreas(1)|skin(1)	6	Ovarian(93;0.0816)	all_hematologic(90;0.152)			L-Glutamine(DB00130)	GGGGCCACACCGATACATGCC	0.512													12	35					0	0	0.002450	0	0
RIOK1	83732	broad.mit.edu	37	6	7401210	7401210	+	Missense_Mutation	SNP	G	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:7401210G>C	uc003mxn.2	+	6	674	c.500G>C	c.(499-501)AGA>ACA	p.R167T	RIOK1_uc003mxm.1_Missense_Mutation_p.R63T|RIOK1_uc003mxo.2_5'Flank	NM_031480	NP_113668	Q9BRS2	RIOK1_HUMAN	RIO kinase 1 isoform 1	167							ATP binding|protein serine/threonine kinase activity			ovary(2)|stomach(1)|skin(1)	4	Ovarian(93;0.0418)					CCCAGAACAAGAATGATTTTA	0.338													8	36					0	0	0.008291	0	0
DSP	1832	broad.mit.edu	37	6	7579759	7579759	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:7579759C>T	uc003mxp.1	+	23	3615	c.3336C>T	c.(3334-3336)ACC>ACT	p.T1112T	DSP_uc003mxq.1_Silent_p.T1112T	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	1112	Central fibrous rod domain.|Potential.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		AGAAGATCACCCGACTGACTT	0.428													16	45					0	0	0.003163	0	0
BMP6	654	broad.mit.edu	37	6	7880319	7880319	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:7880319G>A	uc003mxu.3	+	6	1555	c.1377G>A	c.(1375-1377)GCG>GCA	p.A459A		NM_001718	NP_001709	P22004	BMP6_HUMAN	bone morphogenetic protein 6 preproprotein	459					BMP signaling pathway|cartilage development|growth|immune response|positive regulation of aldosterone biosynthetic process|positive regulation of bone mineralization|positive regulation of osteoblast differentiation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of transcription from RNA polymerase II promoter|SMAD protein signal transduction	extracellular space	BMP receptor binding|cytokine activity|growth factor activity|protein heterodimerization activity			large_intestine(2)|ovary(1)	3	Ovarian(93;0.0721)					CCAACCACGCGATTGTGCAGA	0.483													14	62					0	0	0.003163	0	0
EEF1E1	9521	broad.mit.edu	37	6	8097578	8097578	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:8097578G>A	uc003mxz.2	-	2	284	c.210C>T	c.(208-210)ATC>ATT	p.I70I	EEF1E1_uc011dic.1_Silent_p.I70I	NM_004280	NP_004271	O43324	MCA3_HUMAN	eukaryotic translation elongation factor 1	70	GST C-terminal.				negative regulation of cell proliferation|positive regulation of apoptosis|positive regulation of DNA damage response, signal transduction by p53 class mediator|tRNA aminoacylation for protein translation	cytosol|nucleus					0	Ovarian(93;0.0398)					ACTGCTGAACGATTGCTTTTT	0.428													36	107					0	0	0.005524	0	0
GCM2	9247	broad.mit.edu	37	6	10876690	10876690	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:10876690C>T	uc003mzn.3	-	3	516	c.444G>A	c.(442-444)GCG>GCA	p.A148A	SYCP2L_uc011dim.1_Intron	NM_004752	NP_004743	O75603	GCM2_HUMAN	glial cells missing homolog 2	148	GCM.				cellular calcium ion homeostasis|cellular phosphate ion homeostasis|parathyroid gland development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|sequence-specific DNA binding			ovary(2)|central_nervous_system(1)	3	Breast(50;0.0838)|Ovarian(93;0.107)	all_hematologic(90;0.135)				GAAAAAAGATCGCGTTGCCAT	0.498													13	38					0	0	0.001855	0	0
SYCP2L	221711	broad.mit.edu	37	6	10956473	10956473	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:10956473G>A	uc003mzo.2	+	25	2457	c.2161G>A	c.(2161-2163)GAG>AAG	p.E721K	SYCP2L_uc010jow.2_Missense_Mutation_p.E341K	NM_001040274	NP_001035364	Q5T4T6	SYC2L_HUMAN	synaptonemal complex protein 2-like	721						nucleus				ovary(1)|skin(1)	2	Breast(50;0.0838)|Ovarian(93;0.107)	all_hematologic(90;0.135)	Epithelial(50;0.239)			AAGAAAATATGAGGTAGTAGT	0.259													4	14					0	0	0.009096	0	0
ERVFRDE1	405754	broad.mit.edu	37	6	11104936	11104936	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:11104936C>T	uc003mzt.2	-	2	978	c.608G>A	c.(607-609)CGA>CAA	p.R203Q	LOC221710_uc003mzr.2_Intron|LOC221710_uc011dio.1_Intron	NM_207582	NP_997465	P60508	EFRD1_HUMAN	syncytin 2	203	Extracellular (Potential).					integral to membrane|plasma membrane|virion					0						CCAGAAGTTTCGAGTACTGCA	0.443													35	77					0	0	0.003755	0	0
HIVEP1	3096	broad.mit.edu	37	6	12163537	12163537	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:12163537C>T	uc003nac.2	+	9	7179	c.7000C>T	c.(7000-7002)CCT>TCT	p.P2334S	HIVEP1_uc011diq.1_RNA	NM_002114	NP_002105	P15822	ZEP1_HUMAN	human immunodeficiency virus type I enhancer	2334					transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	Breast(50;0.0639)|Ovarian(93;0.0816)	all_hematologic(90;0.117)				TGTAAGACTTCCTCCTGCTGC	0.468													57	166					0	0	0.014410	0	0
EDN1	1906	broad.mit.edu	37	6	12294190	12294190	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:12294190G>A	uc003nae.3	+	3	584	c.250G>A	c.(250-252)GGA>AGA	p.G84R	EDN1_uc003nad.2_Missense_Mutation_p.G84R|EDN1_uc003naf.3_Missense_Mutation_p.G83R	NM_001955	NP_001946	P05305	EDN1_HUMAN	endothelin 1 precursor	84					artery smooth muscle contraction|calcium-mediated signaling|leukocyte activation|negative regulation of blood coagulation|negative regulation of cellular protein metabolic process|negative regulation of nitric-oxide synthase biosynthetic process|negative regulation of transcription from RNA polymerase II promoter|nitric oxide transport|peptide hormone secretion|phosphatidylinositol 3-kinase cascade|positive regulation of cardiac muscle hypertrophy|positive regulation of cell size|positive regulation of endothelial cell migration|positive regulation of heart rate|positive regulation of hormone secretion|positive regulation of JUN kinase activity|positive regulation of mitosis|positive regulation of nitric oxide biosynthetic process|positive regulation of prostaglandin-endoperoxide synthase activity|positive regulation of sarcomere organization|positive regulation of smooth muscle cell proliferation|prostaglandin biosynthetic process|protein kinase C deactivation|regulation of systemic arterial blood pressure by endothelin|regulation of vasoconstriction|vein smooth muscle contraction	cytoplasm|extracellular space	cytokine activity|endothelin A receptor binding|endothelin B receptor binding|hormone activity			skin(1)	1	all_cancers(95;0.241)|Breast(50;0.0266)|Ovarian(93;0.12)	all_hematologic(90;0.117)				TGTTCCGTATGGACTTGGAAG	0.413													11	16					0	0	0.010729	0	0
CCDC90A	63933	broad.mit.edu	37	6	13801537	13801537	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:13801537G>A	uc003nbd.2	-	4	852	c.724C>T	c.(724-726)CTC>TTC	p.L242F	CCDC90A_uc010jpf.2_RNA	NM_001031713	NP_001026883	Q96AQ8	CC90A_HUMAN	coiled-coil domain containing 90A precursor	242	Potential.					integral to membrane|mitochondrion					0	Breast(50;0.0027)|Ovarian(93;0.0964)	all_hematologic(90;0.117)				TCTGCTCTGAGGGCTGAAAAT	0.284													36	103					0	0	0.011902	0	0
CAP2	10486	broad.mit.edu	37	6	17426833	17426833	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:17426833C>T	uc003ncb.2	+	3	377	c.134C>T	c.(133-135)TCC>TTC	p.S45F	CAP2_uc010jpk.1_RNA|CAP2_uc011dja.1_Missense_Mutation_p.S45F|CAP2_uc011djb.1_Missense_Mutation_p.S45F|CAP2_uc011djc.1_Missense_Mutation_p.S45F|CAP2_uc011djd.1_Missense_Mutation_p.S45F	NM_006366	NP_006357	P40123	CAP2_HUMAN	adenylyl cyclase-associated protein 2	45					activation of adenylate cyclase activity|axon guidance|cytoskeleton organization|establishment or maintenance of cell polarity|signal transduction	plasma membrane	actin binding			ovary(1)	1	Breast(50;0.0333)|Ovarian(93;0.0386)	all_hematologic(90;0.0466)	all cancers(50;0.194)|Epithelial(50;0.227)			GTGGCACCCTCCGTGGAAGCC	0.423													11	54					0	0	0.013537	0	0
KDM1B	221656	broad.mit.edu	37	6	18171642	18171642	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:18171642G>A	uc003ncn.1	+	7	707	c.466G>A	c.(466-468)GAA>AAA	p.E156K		NM_153042	NP_694587	Q8NB78	KDM1B_HUMAN	amine oxidase (flavin containing) domain 1	156	CW-type.				multicellular organismal development|regulation of DNA methylation|regulation of gene expression by genetic imprinting|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	histone demethylase activity (H3-dimethyl-K4 specific)|histone demethylase activity (H3-monomethyl-K4 specific)|oxidoreductase activity|zinc ion binding			skin(1)	1						GCTTACCAAGGAAATCCAGCT	0.388													12	28					0	0	0.013537	0	0
RNF144B	255488	broad.mit.edu	37	6	18465261	18465262	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:18465261_18465262GG>AA	uc003ncs.2	+	8	1179_1180	c.875_876GG>AA	c.(874-876)CGG>CAA	p.R292Q		NM_182757	NP_877434	Q7Z419	R144B_HUMAN	IBR domain containing 2	292					apoptosis|positive regulation of anti-apoptosis|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	integral to membrane|mitochondrial membrane	protein binding|ubiquitin-protein ligase activity|zinc ion binding				0	Ovarian(93;0.00365)|Breast(50;0.0145)	all_hematologic(90;0.0536)	OV - Ovarian serous cystadenocarcinoma(7;0.00165)|all cancers(50;0.0102)|Epithelial(50;0.0105)			AAGTCCTGTCGGGGCAAGAAGA	0.495													15	14					0	0	0.004672	0	0
KIAA0319	9856	broad.mit.edu	37	6	24596513	24596513	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:24596513C>T	uc011djo.1	-	3	626	c.389G>A	c.(388-390)TGG>TAG	p.W130*	KIAA0319_uc011djp.1_Nonsense_Mutation_p.W85*|KIAA0319_uc003neh.1_Nonsense_Mutation_p.W130*|KIAA0319_uc011djq.1_Nonsense_Mutation_p.W121*|KIAA0319_uc011djr.1_Nonsense_Mutation_p.W130*	NM_014809	NP_055624	Q5VV43	K0319_HUMAN	KIAA0319 precursor	130	Extracellular (Potential).				negative regulation of dendrite development|neuron migration	early endosome membrane|integral to membrane|plasma membrane	protein binding			ovary(1)|skin(1)	2						TGAGTCCCCCCAGATCCCCGA	0.552													16	39					0	0	0.004990	0	0
KIAA0319	9856	broad.mit.edu	37	6	24596614	24596614	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:24596614G>A	uc011djo.1	-	3	525	c.288C>T	c.(286-288)ATC>ATT	p.I96I	KIAA0319_uc011djp.1_Silent_p.I51I|KIAA0319_uc003neh.1_Silent_p.I96I|KIAA0319_uc011djq.1_Silent_p.I87I|KIAA0319_uc011djr.1_Silent_p.I96I	NM_014809	NP_055624	Q5VV43	K0319_HUMAN	KIAA0319 precursor	96	MANSC.|Extracellular (Potential).				negative regulation of dendrite development|neuron migration	early endosome membrane|integral to membrane|plasma membrane	protein binding			ovary(1)|skin(1)	2						GATAAGACCTGATGGGGCCCA	0.602													10	54					0	0	0.010729	0	0
KIAA0319	9856	broad.mit.edu	37	6	24596740	24596740	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:24596740G>A	uc011djo.1	-	3	399	c.162C>T	c.(160-162)GTC>GTT	p.V54V	KIAA0319_uc011djp.1_Silent_p.V9V|KIAA0319_uc003neh.1_Silent_p.V54V|KIAA0319_uc011djq.1_Silent_p.V45V|KIAA0319_uc011djr.1_Silent_p.V54V	NM_014809	NP_055624	Q5VV43	K0319_HUMAN	KIAA0319 precursor	54	MANSC.|Extracellular (Potential).				negative regulation of dendrite development|neuron migration	early endosome membrane|integral to membrane|plasma membrane	protein binding			ovary(1)|skin(1)	2						TGCAGTCTACGACAGGGAAGG	0.577													15	33					0	0	0.003163	0	0
SCGN	10590	broad.mit.edu	37	6	25701508	25701508	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:25701508G>A	uc003nfb.2	+	11	979	c.776G>A	c.(775-777)GGA>GAA	p.G259E	SCGN_uc010jpz.2_Missense_Mutation_p.G150E	NM_006998	NP_008929	O76038	SEGN_HUMAN	secretagogin precursor	259	6 (Potential).|EF-hand 6.					extracellular region|transport vesicle membrane	calcium ion binding			ovary(2)|pancreas(1)	3						AACAAGGATGGAAAAATTCAG	0.473													22	41					0	0	0.012319	0	0
SLC17A4	10050	broad.mit.edu	37	6	25769408	25769408	+	Missense_Mutation	SNP	T	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:25769408T>A	uc003nfe.2	+	3	406	c.287T>A	c.(286-288)TTT>TAT	p.F96Y	SLC17A4_uc011djx.1_Missense_Mutation_p.F96Y|SLC17A4_uc003nff.1_Missense_Mutation_p.F33Y|SLC17A4_uc003nfg.2_Missense_Mutation_p.F33Y	NM_005495	NP_005486	Q9Y2C5	S17A4_HUMAN	solute carrier family 17 (sodium phosphate),	96					phosphate metabolic process	integral to plasma membrane|membrane fraction	sodium:phosphate symporter activity			skin(1)	1						CTAAAAGAATTTAAAGCAATG	0.388													16	15					0	0	0.003163	0	0
SLC17A1	6568	broad.mit.edu	37	6	25799016	25799016	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:25799016G>A	uc003nfh.3	-	12	1517	c.1401C>T	c.(1399-1401)CTC>CTT	p.L467L	SLC17A1_uc011djy.1_RNA|SLC17A1_uc010jqb.1_Silent_p.L465L|SLC17A1_uc010jqc.1_Silent_p.L411L	NM_005074	NP_005065	Q14916	NPT1_HUMAN	solute carrier family 17 (sodium phosphate),	467					sodium ion transport|urate metabolic process	integral to plasma membrane|membrane fraction	sodium-dependent phosphate transmembrane transporter activity|symporter activity			ovary(3)|pancreas(1)	4						CTCACCTTCAGAGACGTGTGT	0.373													24	49					0	0	0.003954	0	0
SLC17A1	6568	broad.mit.edu	37	6	25813407	25813407	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:25813407G>A	uc003nfh.3	-	7	767	c.651C>T	c.(649-651)TTC>TTT	p.F217F	SLC17A1_uc011djy.1_Intron|SLC17A1_uc010jqb.1_Silent_p.F215F|SLC17A1_uc010jqc.1_Silent_p.F215F	NM_005074	NP_005065	Q14916	NPT1_HUMAN	solute carrier family 17 (sodium phosphate),	217	Helical; (Potential).				sodium ion transport|urate metabolic process	integral to plasma membrane|membrane fraction	sodium-dependent phosphate transmembrane transporter activity|symporter activity			ovary(3)|pancreas(1)	4						AAAACAGAACGAACCAGAGAA	0.458													17	44					0	0	0.004990	0	0
SLC17A3	10786	broad.mit.edu	37	6	25851002	25851002	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:25851002G>A	uc003nfi.3	-	6	692	c.582C>T	c.(580-582)TCC>TCT	p.S194S	SLC17A3_uc003nfk.3_Silent_p.S272S|SLC17A3_uc011djz.1_Silent_p.S272S|SLC17A3_uc011dka.1_Silent_p.S194S	NM_006632	NP_006623	O00476	NPT4_HUMAN	solute carrier family 17 (sodium phosphate),	194					glucose-6-phosphate transport|urate metabolic process	apical plasma membrane|brush border membrane|endoplasmic reticulum membrane|integral to plasma membrane|perinuclear region of cytoplasm	drug transmembrane transporter activity|efflux transmembrane transporter activity|organic anion transmembrane transporter activity|sodium:phosphate symporter activity|toxin transporter activity|urate transmembrane transporter activity|voltage-gated anion channel activity				0						GTTTCAAGGAGGATATGATGT	0.403													13	33					0	0	0.002450	0	0
BTN2A2	10385	broad.mit.edu	37	6	26392647	26392647	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:26392647C>T	uc003nhq.2	+	8	1110	c.1024C>T	c.(1024-1026)CTG>TTG	p.L342L	BTN2A2_uc011dkg.1_3'UTR|BTN2A2_uc003nhr.2_Silent_p.L226L|BTN2A2_uc011dkh.1_Silent_p.L132L|BTN2A2_uc003nhs.2_Intron|BTN2A2_uc003nht.2_Silent_p.L342L|BTN2A2_uc011dki.1_3'UTR	NM_006995	NP_008926	Q8WVV5	BT2A2_HUMAN	butyrophilin, subfamily 2, member A2 isoform a	342	B30.2/SPRY.|Cytoplasmic (Potential).				negative regulation of activated T cell proliferation|negative regulation of cellular metabolic process|negative regulation of cytokine secretion	integral to membrane					0						CGAGCTCTTCCTGTCAGAGGA	0.587													22	49					0	0	0.012319	0	0
BTN3A1	11119	broad.mit.edu	37	6	26408109	26408109	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:26408109G>A	uc003nhv.2	+	4	1012	c.644G>A	c.(643-645)GGG>GAG	p.G215E	BTN3A1_uc011dkj.1_Missense_Mutation_p.G215E|BTN3A1_uc011dkk.1_Missense_Mutation_p.G163E|BTN3A1_uc010jqj.2_Missense_Mutation_p.G215E	NM_007048	NP_008979	O00481	BT3A1_HUMAN	butyrophilin, subfamily 3, member A1 isoform a	215	Ig-like V-type 2.|Extracellular (Potential).				lipid metabolic process	integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2						GGCAGCTCTGGGGAGGGTGTA	0.547													33	87					0	0	0.003271	0	0
HIST1H2BK	85236	broad.mit.edu	37	6	27114472	27114472	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:27114472C>T	uc003nix.1	-	1	148	c.106G>A	c.(106-108)GAG>AAG	p.E36K	HIST1H2AH_uc003niz.2_5'Flank|hsa-mir-3143|MI0014167_5'Flank	NM_080593	NP_542160	O60814	H2B1K_HUMAN	histone cluster 1, H2bk	36					defense response to bacterium|nucleosome assembly	nucleosome|nucleus	DNA binding				0						GAGTAGCTCTCCTTGCGGCTG	0.587													23	150					0	0	0.007291	0	0
OR2B2	81697	broad.mit.edu	37	6	27879581	27879581	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:27879581C>T	uc011dkw.1	-	1	517	c.517G>A	c.(517-519)GAA>AAA	p.E173K		NM_033057	NP_149046	Q9GZK3	OR2B2_HUMAN	olfactory receptor, family 2, subfamily B,	173	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TGATCCACTTCTTTGTGACCA	0.463													33	43					0	0	0.012213	0	0
PGBD1	84547	broad.mit.edu	37	6	28264676	28264676	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:28264676C>T	uc003nky.2	+	5	1096	c.726C>T	c.(724-726)CTC>CTT	p.L242L	PGBD1_uc003nkz.2_Silent_p.L242L	NM_032507	NP_115896	Q96JS3	PGBD1_HUMAN	piggyBac transposable element derived 1	242					viral reproduction	membrane|nucleus	scavenger receptor activity|sequence-specific DNA binding transcription factor activity			ovary(4)	4						GGAGGAACCTCTGTGGGAACT	0.512													23	49					0	0	0.003954	0	0
GPX5	2880	broad.mit.edu	37	6	28501788	28501788	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:28501788C>T	uc003nll.2	+	5	512	c.510C>T	c.(508-510)TCC>TCT	p.S170S	GPX5_uc003nlm.2_3'UTR|GPX5_uc003nln.2_RNA	NM_001509	NP_001500	O75715	GPX5_HUMAN	glutathione peroxidase 5 isoform 1 precursor	170					lipid metabolic process|response to oxidative stress	extracellular region	glutathione peroxidase activity			skin(1)	1					Glutathione(DB00143)	AATCTATATCCTGGGACCCTG	0.493													53	122					0	0	0.014410	0	0
SCAND3	114821	broad.mit.edu	37	6	28547088	28547088	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:28547088C>T	uc003nlo.2	-	2	1147	c.529G>A	c.(529-531)GAA>AAA	p.E177K		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	177					DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						GATTCACATTCCATTCTATCT	0.428													40	88					0	0	0.006230	0	0
OR2W1	26692	broad.mit.edu	37	6	29012269	29012269	+	Silent	SNP	C	T	T	rs144276666		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:29012269C>T	uc003nlw.2	-	1	684	c.684G>A	c.(682-684)ACG>ACA	p.T228T		NM_030903	NP_112165	Q9Y3N9	OR2W1_HUMAN	olfactory receptor, family 2, subfamily W,	228	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.T228T(1)		ovary(2)|skin(1)	3						CTTTTGACTTCGTTCTCAGCA	0.393													34	51					0	0	0.003271	0	0
OR2B3	442184	broad.mit.edu	37	6	29054925	29054925	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:29054925G>A	uc003nlx.2	-	1	166	c.101C>T	c.(100-102)TCA>TTA	p.S34L		NM_001005226	NP_001005226			olfactory receptor, family 2, subfamily B,											skin(1)	1						GATTGTGTATGATATTAACAG	0.408													18	41					0	0	0.012319	0	0
OR2J3	442186	broad.mit.edu	37	6	29079901	29079901	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:29079901C>T	uc011dll.1	+	1	234	c.234C>T	c.(232-234)ACC>ACT	p.T78T		NM_001005216	NP_001005216	O76001	OR2J3_HUMAN	olfactory receptor, family 2, subfamily J,	78	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GCTACACCACCAGCTCTATCC	0.473													52	109					0	0	0.014410	0	0
OR2J2	26707	broad.mit.edu	37	6	29142195	29142195	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:29142195C>T	uc011dlm.1	+	1	885	c.783C>T	c.(781-783)CTC>CTT	p.L261L		NM_030905	NP_112167	O76002	OR2J2_HUMAN	olfactory receptor, family 2, subfamily J,	261	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GCATGTATCTCCAGCCACCAT	0.433													33	71					0	0	0.012213	0	0
OR14J1	442191	broad.mit.edu	37	6	29275110	29275110	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:29275110C>T	uc011dln.1	+	1	644	c.644C>T	c.(643-645)TCC>TTC	p.S215F		NM_030946	NP_112208	Q9UGF5	O14J1_HUMAN	olfactory receptor, family 5, subfamily U member	215	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						ATTGTGCTCTCCTACATTCGC	0.468													9	118					0	0	0.004482	0	0
OR5V1	81696	broad.mit.edu	37	6	29323781	29323781	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:29323781C>T	uc011dlo.1	-	1	274	c.192G>A	c.(190-192)GGG>GGA	p.G64G		NM_030876	NP_110503	Q9UGF6	OR5V1_HUMAN	olfactory receptor, family 5, subfamily V,	64	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|kidney(1)	4						AGGCCAAGTTCCCTAGAAAAT	0.408													53	104					0	0	0.014410	0	0
OR10C1	442194	broad.mit.edu	37	6	29408389	29408389	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:29408389C>T	uc011dlp.1	+	1	597	c.597C>T	c.(595-597)ATC>ATT	p.I199I	OR11A1_uc010jrh.1_Intron	NM_013941	NP_039229	Q96KK4	O10C1_HUMAN	olfactory receptor, family 10, subfamily C,	199	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TGCAGATTATCCTGGCAACAG	0.577													48	109					0	0	0.014410	0	0
OR10C1	442194	broad.mit.edu	37	6	29408591	29408592	+	Missense_Mutation	DNP	CC	TT	TT	rs150247833	by1000genomes	TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:29408591_29408592CC>TT	uc011dlp.1	+	1	799_800	c.799_800CC>TT	c.(799-801)CCG>TTG	p.P267L	OR11A1_uc010jrh.1_Intron	NM_013941	NP_039229	Q96KK4	O10C1_HUMAN	olfactory receptor, family 10, subfamily C,	267	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CAGCTACGATCCGGCCACTGAC	0.569													64	109					0	0	0.004672	0	0
OR2H2	7932	broad.mit.edu	37	6	29556431	29556431	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:29556431G>A	uc003nmr.1	+	1	749	c.710G>A	c.(709-711)GGG>GAG	p.G237E	GABBR1_uc003nmp.3_Intron	NM_007160	NP_009091	O95918	OR2H2_HUMAN	olfactory receptor, family 2, subfamily H,	237	Helical; Name=6; (Potential).				defense response|mating|sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						AAAGCTTTTGGGACCTGCTCC	0.532													13	56					0	0	0.002450	0	0
GABBR1	2550	broad.mit.edu	37	6	29571449	29571449	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:29571449C>T	uc003nmt.3	-	23	3093	c.2757G>A	c.(2755-2757)CGG>CGA	p.R919R	GABBR1_uc003nmp.3_Silent_p.R802R|GABBR1_uc003nms.3_Silent_p.R802R|GABBR1_uc003nmu.3_Silent_p.R857R|GABBR1_uc011dlr.1_Silent_p.R742R	NM_001470	NP_001461	Q9UBS5	GABR1_HUMAN	gamma-aminobutyric acid (GABA) B receptor 1	919	Cytoplasmic (Potential).|Potential.			Missing (in Ref. 7; CAA09031).	gamma-aminobutyric acid signaling pathway|negative regulation of adenylate cyclase activity|synaptic transmission	cell junction|extracellular region|integral to plasma membrane|postsynaptic membrane	G-protein coupled receptor activity|GABA-B receptor activity			ovary(5)|liver(1)|skin(1)	7					Baclofen(DB00181)|Progabide(DB00837)	GGAGCTGCTGCCGAGACTGGA	0.557													8	13					0	0	0.003080	0	0
ZFP57	346171	broad.mit.edu	37	6	29640868	29640868	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:29640868C>T	uc011dlw.1	-	4	1171	c.1020G>A	c.(1018-1020)ATG>ATA	p.M340I	ZFP57_uc003nnl.3_Missense_Mutation_p.M320I	NM_001109809	NP_001103279	Q9NU63	ZFP57_HUMAN	zinc finger protein 57 homolog	256					DNA methylation involved in embryo development|regulation of gene expression by genetic imprinting|transcription, DNA-dependent		DNA binding|zinc ion binding			ovary(3)|skin(2)	5						GGTTCTGGGCCATAGGACCCT	0.557													46	96					0	0	0.014410	0	0
DHX16	8449	broad.mit.edu	37	6	30632922	30632922	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:30632922G>A	uc003nqz.2	-	6	1263	c.1051C>T	c.(1051-1053)CCC>TCC	p.P351S	DHX16_uc011dmo.1_Missense_Mutation_p.P291S	NM_003587	NP_003578	O60231	DHX16_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 16	351					mRNA processing|RNA splicing	nucleus	ATP binding|ATP-dependent helicase activity|nucleic acid binding|RNA helicase activity			ovary(2)|kidney(2)	4						TGATACTTGGGCTCCTGAGAG	0.632													4	20					0	0	0.000602	0	0
NRM	11270	broad.mit.edu	37	6	30657977	30657977	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:30657977G>A	uc003nrc.2	-	2	195	c.177C>T	c.(175-177)ATC>ATT	p.I59I	KIAA1949_uc003nra.2_5'Flank|KIAA1949_uc003nrb.3_5'Flank|NRM_uc003nrd.2_RNA|NRM_uc003nre.2_Intron	NM_007243	NP_009174	Q8IXM6	NRM_HUMAN	nurim	59	Helical; (Potential).					integral to membrane|nuclear inner membrane					0						GGGGGGCAAGGATGCTGCGGT	0.562													27	43					0	0	0.006320	0	0
CDSN	1041	broad.mit.edu	37	6	31084274	31084274	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:31084274C>T	uc003nsm.1	-	2	1145	c.1118G>A	c.(1117-1119)GGG>GAG	p.G373E	PSORS1C1_uc003nsl.1_Intron|PSORS1C1_uc010jsj.1_Intron	NM_001264	NP_001255	Q15517	CDSN_HUMAN	corneodesmosin precursor	373	Ser-rich.				cell-cell adhesion|keratinocyte differentiation|skin morphogenesis	cornified envelope|desmosome|extracellular region	protein homodimerization activity			ovary(1)|pancreas(1)	2						CCCACCAGTCCCCACTGGCTG	0.632													5	11					0	0	0.000602	0	0
ATP6V1G2	534	broad.mit.edu	37	6	31513909	31513909	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:31513909C>T	uc003nua.2	-	2	451	c.160G>A	c.(160-162)GAA>AAA	p.E54K	BAT1_uc003ntv.2_5'UTR|ATP6V1G2_uc003ntz.2_Missense_Mutation_p.E13K|NFKBIL1_uc011dnr.1_5'Flank|NFKBIL1_uc011dns.1_5'Flank|NFKBIL1_uc011dnt.1_5'Flank|NFKBIL1_uc003nuc.2_5'Flank|NFKBIL1_uc003nub.2_5'Flank	NM_130463	NP_569730	O95670	VATG2_HUMAN	ATPase, H+ transporting, lysosomal, V1 subunit	54					cellular iron ion homeostasis|insulin receptor signaling pathway|proton transport|transferrin transport	cytosol|melanosome|vacuolar proton-transporting V-type ATPase complex	hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances|protein binding				0						CTCTGGAATTCGTGCTCTCGC	0.582													43	90					0	0	0.014410	0	0
BAT2	7916	broad.mit.edu	37	6	31592070	31592070	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:31592070C>T	uc003nvb.3	+	4	572	c.323C>T	c.(322-324)TCG>TTG	p.S108L	BAT2_uc011dnv.1_RNA|BAT2_uc003nvc.3_Missense_Mutation_p.S108L|BAT2_uc003nve.2_5'Flank	NM_080686	NP_542417	P48634	PRC2A_HUMAN	HLA-B associated transcript-2	108	4 X 57 AA type A repeats.|1-2.			ESQPLPASQTPASNQPK -> NRTTAGFTDACLQPAE (in Ref. 8; CAA78744).		cytoplasm|nucleus	protein binding				0						CCGCCGGAATCGCAGCCACTG	0.617													7	60					0	0	0.001984	0	0
LY6G6F	259215	broad.mit.edu	37	6	31675540	31675540	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:31675540G>A	uc003nwa.1	+	2	358	c.358G>A	c.(358-360)GTG>ATG	p.V120M	BAT5_uc011dnz.1_Intron|LY6G6F_uc003nwb.1_Missense_Mutation_p.V120M	NM_001003693	NP_001003693	Q5SQ64	LY66F_HUMAN	G6f protein precursor	120	Extracellular (Potential).|Ig-like V-type.					integral to membrane|plasma membrane				breast(1)|central_nervous_system(1)	2						GAACTGGAGGGTGTACGACGT	0.572													101	187					0	0	0.014410	0	0
C6orf27	80737	broad.mit.edu	37	6	31734953	31734953	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:31734953G>A	uc011dog.1	-	13	2102	c.1864C>T	c.(1864-1866)CTG>TTG	p.L622L	C6orf27_uc003nxd.2_Silent_p.L297L	NM_025258	NP_079534	Q9Y334	G7C_HUMAN	G7c protein precursor	622						extracellular region				ovary(3)	3						GGCTGAGTCAGGGGGTAGAGG	0.478													70	164					0	0	0.014410	0	0
CFB	629	broad.mit.edu	37	6	31901545	31901545	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:31901545G>A	uc011dor.1	+	3	679	c.415G>A	c.(415-417)GAG>AAG	p.E139K	C2_uc003nyc.2_Silent_p.R32R|C2_uc011doo.1_Silent_p.R32R|C2_uc011dop.1_Missense_Mutation_p.E78K|C2_uc003nye.3_Missense_Mutation_p.E201K|C2_uc003nyf.2_Missense_Mutation_p.E201K|C2_uc010jtk.2_Missense_Mutation_p.E69K|C2_uc011doq.1_Missense_Mutation_p.E172K|C2_uc003nyg.2_Missense_Mutation_p.E69K	NM_001710	NP_001701	P00751	CFAB_HUMAN	complement factor B preproprotein	215	Sushi 3.				complement activation, alternative pathway|proteolysis	extracellular region|plasma membrane	complement binding|serine-type endopeptidase activity			skin(1)	1						GAGTGGAACGGAGCCCATCTG	0.652													76	162					0	0	0.014410	0	0
C2	717	broad.mit.edu	37	6	31902050	31902050	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:31902050G>A	uc003nyf.2	+	6	1087	c.823G>A	c.(823-825)GAG>AAG	p.E275K	C2_uc003nyc.2_Intron|C2_uc011doo.1_Intron|C2_uc011dop.1_Intron|C2_uc003nye.3_Missense_Mutation_p.E275K|C2_uc010jtk.2_Missense_Mutation_p.E143K|C2_uc011doq.1_Missense_Mutation_p.E246K|C2_uc003nyg.2_Intron|CFB_uc011dor.1_Intron|C2_uc003nyh.1_5'Flank	NM_000063	NP_000054	P06681	CO2_HUMAN	complement component 2 isoform 1 preproprotein	275	VWFA.				complement activation, classical pathway|innate immune response|proteolysis	extracellular space	serine-type endopeptidase activity			ovary(1)|skin(1)	2		Ovarian(999;0.00965)		LUAD - Lung adenocarcinoma(999;0.247)		CATCTTCAAGGAGAGCGCCTC	0.547													90	199					0	0	0.014410	0	0
CFB	629	broad.mit.edu	37	6	31915126	31915126	+	Silent	SNP	G	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:31915126G>T	uc003nyj.3	+	4	764	c.486G>T	c.(484-486)GCG>GCT	p.A162A	CFB_uc011dor.1_Silent_p.A664A|CFB_uc003nyi.2_Silent_p.A162A	NM_001710	NP_001701	P00751	CFAB_HUMAN	complement factor B preproprotein	162					complement activation, alternative pathway|proteolysis	extracellular region|plasma membrane	complement binding|serine-type endopeptidase activity			skin(1)	1						CCTCTGCAGCGGGGTACTGCT	0.607													67	190					9.65139e-37	1.0444e-36	0.014410	1	0
STK19	8859	broad.mit.edu	37	6	31940123	31940123	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:31940123G>A	uc003nyv.2	+	2	393	c.265G>A	c.(265-267)GAC>AAC	p.D89N	DOM3Z_uc003nyo.1_5'Flank|DOM3Z_uc003nyp.1_5'Flank|DOM3Z_uc003nyq.1_5'Flank|DOM3Z_uc003nyr.1_5'Flank|DOM3Z_uc003nys.1_5'Flank|DOM3Z_uc010jtl.1_5'Flank|STK19_uc003nyt.2_Missense_Mutation_p.D46N|DOM3Z_uc003nyu.1_5'Flank|STK19_uc011dow.1_Missense_Mutation_p.D89N|STK19_uc011dox.1_Missense_Mutation_p.D46N|STK19_uc003nyw.2_Missense_Mutation_p.D89N|STK19_uc010jtn.1_RNA	NM_032454	NP_115830	P49842	STK19_HUMAN	serine/threonine kinase 19 isoform 2	89			D -> N (in a metastatic melanoma sample; somatic mutation).			nucleus	ATP binding|protein binding|protein serine/threonine kinase activity	p.D89N(2)		skin(4)	4						TGCGCCGGAAGACCCTATTTT	0.582													32	81					0	0	0.003271	0	0
CYP21A2	1589	broad.mit.edu	37	6	32007948	32007948	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:32007948C>T	uc003nze.1	+	7	1023	c.905C>T	c.(904-906)TCC>TTC	p.S302F	CYP21A2_uc003nzf.1_Missense_Mutation_p.S272F	NM_000500	NP_000491	P08686	CP21A_HUMAN	cytochrome P450, family 21, subfamily A,	301			S -> Y (in AH3).		glucocorticoid biosynthetic process|mineralocorticoid biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	electron carrier activity|heme binding|steroid 21-monooxygenase activity|steroid binding				0						AACACCCTCTCCTGGGCCGTG	0.617													123	244					0	0	0.014410	0	0
TNXB	7148	broad.mit.edu	37	6	32010358	32010358	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:32010358C>T	uc003nzl.2	-	40	12280	c.12078G>A	c.(12076-12078)AGG>AGA	p.R4026R	TNXB_uc003nzg.1_Silent_p.R457R|TNXB_uc003nzh.1_Silent_p.R495R	NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	4073	Fibrinogen C-terminal.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						CCCCGCAGTCCCTGGGGAAGG	0.682													44	173					0	0	0.014410	0	0
TNXB	7148	broad.mit.edu	37	6	32017111	32017111	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:32017111C>T	uc003nzl.2	-	28	9889	c.9687G>A	c.(9685-9687)AAG>AAA	p.K3229K	TNXB_uc003nzh.1_5'Flank	NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	3276	Fibronectin type-III 24.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						ACAGATGCATCTTGTATTTGC	0.682													66	175					0	0	0.014410	0	0
TNXB	7148	broad.mit.edu	37	6	32020716	32020716	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:32020716G>A	uc003nzl.2	-	26	9042	c.8840C>T	c.(8839-8841)CCC>CTC	p.P2947L		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	2994					actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						CTCCTCAGGGGGCTCCGGGGC	0.662													116	233					0	0	0.014410	0	0
TNXB	7148	broad.mit.edu	37	6	32038093	32038093	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:32038093G>A	uc003nzl.2	-	14	5291	c.5089C>T	c.(5089-5091)CCT>TCT	p.P1697S		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	1779	Fibronectin type-III 10.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						TGGCCCTCAGGAACCGTCCAG	0.662													69	123					0	0	0.014410	0	0
NOTCH4	4855	broad.mit.edu	37	6	32165227	32165227	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:32165227C>T	uc003obb.2	-	27	5040	c.4901G>A	c.(4900-4902)GGG>GAG	p.G1634E	GPSM3_uc003oaz.2_5'Flank|NOTCH4_uc011dpt.1_Missense_Mutation_p.G43E|NOTCH4_uc003oba.2_Missense_Mutation_p.G294E|NOTCH4_uc011dpu.1_RNA|NOTCH4_uc011dpv.1_RNA|NOTCH4_uc011dpw.1_Missense_Mutation_p.G43E	NM_004557	NP_004548	Q99466	NOTC4_HUMAN	notch4 preproprotein	1634	Cytoplasmic (Potential).|ANK 1.				cell fate determination|embryo development|hemopoiesis|mammary gland development|negative regulation of endothelial cell differentiation|Notch receptor processing|Notch signaling pathway|patterning of blood vessels|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|protein heterodimerization activity|receptor activity			lung(8)|ovary(5)|breast(4)|central_nervous_system(3)|upper_aerodigestive_tract(1)|skin(1)	22						GGGGGTCTCCCCAGTGCCCAC	0.697													81	326					0	0	0.014410	0	0
C6orf10	10665	broad.mit.edu	37	6	32261670	32261670	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:32261670C>T	uc011dpy.1	-	12	953	c.780G>A	c.(778-780)ACG>ACA	p.T260T	C6orf10_uc011dpx.1_Silent_p.T42T	NM_006781	NP_006772	Q5SRN2	CF010_HUMAN	chromosome 6 open reading frame 10	260						integral to membrane				skin(1)	1						CTACAGAATTCGTAAATATGA	0.393													36	81					0	0	0.003271	0	0
BTNL2	56244	broad.mit.edu	37	6	32372984	32372984	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:32372984G>A	uc003obg.1	-	2	159	c.159C>T	c.(157-159)CTC>CTT	p.L53L	BTNL2_uc010jty.1_5'UTR|BTNL2_uc010jtz.1_RNA|BTNL2_uc010jua.1_Intron	NM_019602	NP_062548	Q9UIR0	BTNL2_HUMAN	butyrophilin-like 2	53	Ig-like V-type 1.|Extracellular (Potential).					integral to membrane				central_nervous_system(1)	1						TCCTCTTGGGGAGTAGCTGGC	0.532													34	59					0	0	0.013726	0	0
HLA-DRB1	3123	broad.mit.edu	37	6	32549490	32549490	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:32549490C>T	uc003obp.3	-	3	539	c.496G>A	c.(496-498)GAA>AAA	p.E166K	HLA-DRB1_uc011dqa.1_5'UTR|HLA-DRB5_uc003obk.3_Intron|HLA-DRB6_uc003obo.1_Intron|uc010jub.1_5'Flank|HLA-DRB1_uc011dqb.1_5'UTR|HLA-DRB1_uc011dqc.1_5'UTR	NM_002124	NP_002115	P01911	2B1F_HUMAN	major histocompatibility complex, class II, DR	166	Ig-like C1-type.|Beta-2.|Extracellular (Potential).				antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|interferon-gamma-mediated signaling pathway|T cell costimulation|T cell receptor signaling pathway	endoplasmic reticulum membrane|Golgi apparatus|integral to membrane|late endosome membrane|lysosomal membrane|MHC class II protein complex				skin(1)	1						GCCTTCTCTTCCTGGCCGTTC	0.557									Rheumatoid_Arthritis|Sj_gren_syndrome	Multiple Myeloma(14;0.17)			9	16					0	0	0.003330	0	0
TAP1	6890	broad.mit.edu	37	6	32815321	32815321	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:32815321G>A	uc003ocg.2	-	9	2207	c.2052C>T	c.(2050-2052)TTC>TTT	p.F684F	PSMB8_uc003ocf.2_5'Flank|TAP1_uc011dqi.1_Silent_p.F423F	NM_000593	NP_000584	Q03518	TAP1_HUMAN	transporter 1, ATP-binding cassette, sub-family	684	Cytoplasmic (Potential).|ABC transporter.				antigen processing and presentation of endogenous peptide antigen via MHC class I|cytosol to ER transport|intracellular transport of viral proteins in host cell|positive regulation of T cell mediated cytotoxicity	cytosol|plasma membrane|TAP complex	ADP binding|ATP binding|MHC class I protein binding|oligopeptide-transporting ATPase activity|peptide antigen binding|protein homodimerization activity|TAP1 binding|TAP2 binding|tapasin binding			skin(1)	1						GTCCAGAGATGAAACTATGGG	0.488													9	67					0	0	0.006214	0	0
HLA-DPB1	3115	broad.mit.edu	37	6	33052869	33052869	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:33052869C>T	uc003ocu.1	+	3	566	c.507C>T	c.(505-507)GTC>GTT	p.V169V	HLA-DPB1_uc011dqo.1_RNA|HLA-DPB1_uc011dqp.1_Silent_p.V168V|HLA-DPB1_uc011dqq.1_Silent_p.V65V	NM_002121	NP_002112	P04440	DPB1_HUMAN	major histocompatibility complex, class II, DP	169	Beta-2.|Ig-like C1-type.|Extracellular (Potential).				antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|interferon-gamma-mediated signaling pathway|T cell costimulation|T cell receptor signaling pathway	endoplasmic reticulum membrane|endosome membrane|Golgi apparatus|integral to membrane|lysosomal membrane|MHC class II protein complex				ovary(1)	1						CAGCTGGGGTCGTGTCCACCA	0.557													28	51					0	0	0.012213	0	0
COL11A2	1302	broad.mit.edu	37	6	33132116	33132116	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:33132116G>A	uc003ocx.1	-	65	5226	c.4998C>T	c.(4996-4998)CTC>CTT	p.L1666L	COL11A2_uc010jul.1_Silent_p.L236L|COL11A2_uc003ocy.1_Silent_p.L1580L|COL11A2_uc003ocz.1_Silent_p.L1559L	NM_080680	NP_542411	P13942	COBA2_HUMAN	collagen, type XI, alpha 2 isoform 1	1666	Fibrillar collagen NC1.				cartilage development|cell adhesion|collagen fibril organization|sensory perception of sound|soft palate development	collagen type XI	extracellular matrix structural constituent conferring tensile strength|protein binding, bridging			ovary(3)|skin(2)	5						TGGCCCCACGGAGTCTCAGGG	0.627													13	20					0	0	0.002450	0	0
GRM4	2914	broad.mit.edu	37	6	34004268	34004268	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:34004268C>T	uc003oir.3	-	8	1789	c.1619G>A	c.(1618-1620)TGG>TAG	p.W540*	GRM4_uc011dsn.1_Nonsense_Mutation_p.W493*|GRM4_uc010jvh.2_Nonsense_Mutation_p.W540*|GRM4_uc010jvi.2_Nonsense_Mutation_p.W232*|GRM4_uc003oio.2_Nonsense_Mutation_p.W232*|GRM4_uc003oip.2_RNA|GRM4_uc011dsl.1_Nonsense_Mutation_p.W400*|GRM4_uc003oiq.2_Nonsense_Mutation_p.W407*|GRM4_uc011dsm.1_Nonsense_Mutation_p.W371*	NM_000841	NP_000832	Q14833	GRM4_HUMAN	glutamate receptor, metabotropic 4 precursor	540	Extracellular (Potential).				activation of MAPK activity|inhibition of adenylate cyclase activity by metabotropic glutamate receptor signaling pathway|neuroprotection|neurotransmitter secretion|positive regulation of MAPKKK cascade	cytoplasmic vesicle|integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			lung(3)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	6					L-Glutamic Acid(DB00142)	CTCGCAGTGCCAGCAGCAAGG	0.652													12	42					0	0	0.010729	0	0
PACSIN1	29993	broad.mit.edu	37	6	34496573	34496573	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:34496573C>T	uc003ojo.2	+	4	581	c.375C>T	c.(373-375)ATC>ATT	p.I125I	PACSIN1_uc003ojp.2_Silent_p.I125I	NM_020804	NP_065855	Q9BY11	PACN1_HUMAN	protein kinase C and casein kinase substrate in	125					endocytosis		protein kinase activity				0						ACAAGCAGATCATGGGTGGCT	0.557													25	65					0	0	0.009535	0	0
PACSIN1	29993	broad.mit.edu	37	6	34499442	34499443	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:34499442_34499443CC>TT	uc003ojo.2	+	9	1309_1310	c.1103_1104CC>TT	c.(1102-1104)CCC>CTT	p.P368L	PACSIN1_uc003ojp.2_Missense_Mutation_p.P368L	NM_020804	NP_065855	Q9BY11	PACN1_HUMAN	protein kinase C and casein kinase substrate in	368					endocytosis		protein kinase activity				0						AGTGGGAACCCCTTTGGGGGCA	0.629													17	140					0	0	0.004672	0	0
DEF6	50619	broad.mit.edu	37	6	35277517	35277517	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:35277517G>A	uc003okk.2	+	2	206	c.167G>A	c.(166-168)CGA>CAA	p.R56Q	DEF6_uc010jvs.2_Missense_Mutation_p.R56Q|DEF6_uc010jvt.2_5'UTR	NM_022047	NP_071330	Q9H4E7	DEFI6_HUMAN	differentially expressed in FDCP 6 homolog	56						cytoplasm|nucleus|plasma membrane					0						GAACACTTCCGAGATGATGAT	0.572													16	38					0	0	0.004007	0	0
DEF6	50619	broad.mit.edu	37	6	35280081	35280081	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:35280081G>A	uc003okk.2	+	4	465	c.426G>A	c.(424-426)GTG>GTA	p.V142V	DEF6_uc010jvs.2_Silent_p.V142V|DEF6_uc010jvt.2_Intron	NM_022047	NP_071330	Q9H4E7	DEFI6_HUMAN	differentially expressed in FDCP 6 homolog	142						cytoplasm|nucleus|plasma membrane					0						TGCTCCAGGTGGAATACCTGC	0.607													14	26					0	0	0.001855	0	0
MAPK13	5603	broad.mit.edu	37	6	36106768	36106768	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:36106768G>A	uc003ols.2	+	11	1052	c.954G>A	c.(952-954)ACG>ACA	p.T318T	MAPK13_uc003olt.2_RNA	NM_002754	NP_002745	O15264	MK13_HUMAN	mitogen-activated protein kinase 13	318					cell cycle|intracellular protein kinase cascade|nerve growth factor receptor signaling pathway|positive regulation of interleukin-6 production|Ras protein signal transduction|response to stress		ATP binding|MAP kinase activity|protein binding			breast(2)|central_nervous_system(1)	3						AGGAAGAGACGGAGGCCCAGC	0.602													10	47					0	0	0.013537	0	0
CPNE5	57699	broad.mit.edu	37	6	36742771	36742771	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:36742771G>A	uc003omr.1	-	10	771	c.704C>T	c.(703-705)CCC>CTC	p.P235L	CPNE5_uc003oms.1_Missense_Mutation_p.P214L	NM_020939	NP_065990	Q9HCH3	CPNE5_HUMAN	copine V	235	C2 2.									skin(1)	1						GGCTCTCACGGGAATGGAGAA	0.517													7	25					0	0	0.003080	0	0
RNF8	9025	broad.mit.edu	37	6	37336500	37336500	+	Missense_Mutation	SNP	T	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:37336500T>A	uc003onq.3	+	3	674	c.481T>A	c.(481-483)TTA>ATA	p.L161I	RNF8_uc003onr.3_Missense_Mutation_p.L161I|RNF8_uc011dtx.1_Missense_Mutation_p.L93I	NM_003958	NP_003949	O76064	RNF8_HUMAN	ring finger protein 8 isoform 1	161					cell division|double-strand break repair|histone H2A ubiquitination|histone H2B ubiquitination|mitosis|positive regulation of DNA repair|response to ionizing radiation	midbody|nucleus|ubiquitin ligase complex	chromatin binding|histone binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)	1						TTTGGATGAATTAGCAGGTCC	0.383													19	30					0	0	0.007413	0	0
DNAH8	1769	broad.mit.edu	37	6	38750810	38750810	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:38750810G>A	uc003ooe.1	+	15	2239	c.1639G>A	c.(1639-1641)GGT>AGT	p.G547S		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						AAGTCCGGACGGTAAAGCTGT	0.373													15	46					0	0	0.002450	0	0
DNAH8	1769	broad.mit.edu	37	6	38875751	38875751	+	Missense_Mutation	SNP	G	A	A	rs146541069		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:38875751G>A	uc003ooe.1	+	62	9317	c.8717G>A	c.(8716-8718)CGA>CAA	p.R2906Q	uc003oof.1_Intron	NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						TTGTTTGCACGAGATGAGATG	0.413													27	39					0	0	0.007291	0	0
DNAH8	1769	broad.mit.edu	37	6	38890955	38890955	+	Missense_Mutation	SNP	T	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:38890955T>A	uc003ooe.1	+	70	10733	c.10133T>A	c.(10132-10134)ATT>AAT	p.I3378N	uc003oof.1_RNA	NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						AAAGCTCAGATTAATAGGTGG	0.438													7	21					0	0	0.004482	0	0
LRFN2	57497	broad.mit.edu	37	6	40359880	40359880	+	Silent	SNP	G	A	A	rs144850104	byFrequency	TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:40359880G>A	uc003oph.1	-	3	2637	c.2172C>T	c.(2170-2172)TTC>TTT	p.F724F		NM_020737	NP_065788	Q9ULH4	LRFN2_HUMAN	leucine rich repeat and fibronectin type III	724	Cytoplasmic (Potential).					cell junction|integral to membrane|postsynaptic membrane				ovary(2)|skin(1)	3	Ovarian(28;0.0418)|Colorectal(47;0.196)					CCCCCATGTCGAAGGAGTGGC	0.692													7	15					0	0	0.003080	0	0
LRFN2	57497	broad.mit.edu	37	6	40400164	40400164	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:40400164G>A	uc003oph.1	-	2	1154	c.689C>T	c.(688-690)CCC>CTC	p.P230L		NM_020737	NP_065788	Q9ULH4	LRFN2_HUMAN	leucine rich repeat and fibronectin type III	230	Extracellular (Potential).					cell junction|integral to membrane|postsynaptic membrane				ovary(2)|skin(1)	3	Ovarian(28;0.0418)|Colorectal(47;0.196)					TGGGGCAAAGGGTGTGGCTGT	0.592													20	37					0	0	0.008871	0	0
TREML4	285852	broad.mit.edu	37	6	41197835	41197835	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:41197835C>T	uc003oqc.2	+	4	585	c.481C>T	c.(481-483)CCC>TCC	p.P161S	TREML4_uc003oqd.2_RNA	NM_198153	NP_937796	Q6UXN2	TRML4_HUMAN	triggering receptor expressed on myeloid	161						extracellular region				breast(1)	1	Ovarian(28;0.0327)|Colorectal(47;0.196)					CTCTGGCCATCCCTCCATCAA	0.537													36	71					0	0	0.009718	0	0
NCR2	9436	broad.mit.edu	37	6	41303840	41303840	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:41303840C>T	uc003oqh.2	+	2	155	c.68C>T	c.(67-69)TCC>TTC	p.S23F	NCR2_uc003oqi.2_Missense_Mutation_p.S23F|NCR2_uc003oqj.2_Missense_Mutation_p.S23F	NM_004828	NP_004819	O95944	NCTR2_HUMAN	natural cytotoxicity triggering receptor 2	23	Extracellular (Potential).|Ig-like.				cellular defense response	integral to plasma membrane	transmembrane receptor activity			ovary(1)	1	Ovarian(28;0.0327)|Colorectal(47;0.196)					CAGGCACAATCCAAGGCTCAG	0.577													13	24					0	0	0.003163	0	0
NCR2	9436	broad.mit.edu	37	6	41318520	41318520	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:41318520C>T	uc003oqh.2	+	5	836	c.749C>T	c.(748-750)TCC>TTC	p.S250F	NCR2_uc003oqi.2_3'UTR|NCR2_uc003oqj.2_3'UTR	NM_004828	NP_004819	O95944	NCTR2_HUMAN	natural cytotoxicity triggering receptor 2	250	Cytoplasmic (Potential).				cellular defense response	integral to plasma membrane	transmembrane receptor activity			ovary(1)	1	Ovarian(28;0.0327)|Colorectal(47;0.196)					acctcagtttcctcacctgta	0.159													12	22					0	0	0.010729	0	0
MDFI	4188	broad.mit.edu	37	6	41613884	41613884	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:41613884C>T	uc003oqp.3	+	4	426	c.97C>T	c.(97-99)CCT>TCT	p.P33S	MDFI_uc003oqq.3_Missense_Mutation_p.P33S|MDFI_uc010jxn.2_Missense_Mutation_p.P33S	NM_005586	NP_005577	Q99750	MDFI_HUMAN	MyoD family inhibitor	33					cytoplasmic sequestering of transcription factor|dorsal/ventral axis specification|negative regulation of DNA binding|negative regulation of transcription from RNA polymerase II promoter|negative regulation of Wnt receptor signaling pathway	cytoplasm|nucleus					0	Ovarian(28;0.0327)|Colorectal(47;0.121)		Colorectal(64;0.0123)|COAD - Colon adenocarcinoma(64;0.0264)|KIRC - Kidney renal clear cell carcinoma(1;0.138)			ATCCCTCCTTCCTGGGCTGGA	0.637													9	59					0	0	0.008291	0	0
PRICKLE4	29964	broad.mit.edu	37	6	41752781	41752781	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:41752781C>T	uc011duf.1	+	5	597	c.349C>T	c.(349-351)CCC>TCC	p.P117S	PRICKLE4_uc003ord.2_RNA|TOMM6_uc003org.2_5'Flank|TOMM6_uc011dug.1_5'Flank	NM_013397	NP_037529	Q2TBC4	PRIC4_HUMAN	over-expressed breast tumor protein	77	PET.					nucleus	zinc ion binding				0	Ovarian(28;0.0355)|Colorectal(47;0.121)		Epithelial(12;8.38e-05)|STAD - Stomach adenocarcinoma(11;0.000204)|Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)			CCTGGTACTTCCCAAGCTTGA	0.612													11	77					0	0	0.010729	0	0
GUCA1A	2978	broad.mit.edu	37	6	42147103	42147103	+	Missense_Mutation	SNP	G	A	A	rs137984482		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:42147103G>A	uc003orx.2	+	6	1213	c.568G>A	c.(568-570)GAG>AAG	p.E190K	GUCA1A_uc011duo.1_RNA|GUCA1A_uc010jxt.2_Missense_Mutation_p.E190K	NM_000409	NP_000400	P43080	GUC1A_HUMAN	guanylate cyclase activator 1A (retina)	190					signal transduction|visual perception	membrane	calcium ion binding|calcium sensitive guanylate cyclase activator activity				0	Colorectal(47;0.196)		STAD - Stomach adenocarcinoma(11;5.54e-05)|Epithelial(12;0.000167)|Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)			CGAGCAAGACGAGGAGGGGGC	0.642													5	9					0	0	0.000602	0	0
UBR2	23304	broad.mit.edu	37	6	42643911	42643911	+	Silent	SNP	T	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:42643911T>C	uc011dur.1	+	39	4369	c.4369T>C	c.(4369-4371)TTA>CTA	p.L1457L	UBR2_uc011dus.1_Silent_p.L1102L|UBR2_uc003osh.2_Intron|UBR2_uc011dut.1_Silent_p.L45L	NM_015255	NP_056070	Q8IWV8	UBR2_HUMAN	ubiquitin protein ligase E3 component n-recognin	1457					cellular response to leucine|chromatin silencing|histone H2A ubiquitination|negative regulation of TOR signaling cascade	nucleus|plasma membrane	leucine binding|zinc ion binding			ovary(3)|pancreas(1)	4	Colorectal(47;0.196)		Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)|all cancers(41;0.004)|KIRC - Kidney renal clear cell carcinoma(15;0.02)|Kidney(15;0.0388)|OV - Ovarian serous cystadenocarcinoma(102;0.196)			CATACAGATCTTACTTACCTC	0.388													20	156					0	0	0.002780	0	0
KLHDC3	116138	broad.mit.edu	37	6	42985014	42985014	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:42985014C>T	uc003otl.2	+	2	253	c.84C>T	c.(82-84)TCC>TCT	p.S28S	KLHDC3_uc003otm.2_RNA|KLHDC3_uc010jyf.2_Silent_p.S28S|KLHDC3_uc003otn.2_5'UTR|KLHDC3_uc003oto.2_Silent_p.S28S	NM_057161	NP_476502	Q9BQ90	KLDC3_HUMAN	kelch domain containing 3	28	Kelch 1.				reciprocal meiotic recombination	cytoplasm|nuclear chromatin	chromatin binding|protein binding			upper_aerodigestive_tract(1)	1			Colorectal(64;0.00237)|all cancers(41;0.0034)|COAD - Colon adenocarcinoma(64;0.00473)|OV - Ovarian serous cystadenocarcinoma(102;0.0539)|KIRC - Kidney renal clear cell carcinoma(15;0.133)|Kidney(15;0.188)			GGGTATACTCCTTCGGGGGTT	0.587													41	82					0	0	0.008740	0	0
CUL9	23113	broad.mit.edu	37	6	43172719	43172719	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:43172719C>T	uc003ouk.2	+	23	4573	c.4498C>T	c.(4498-4500)CGT>TGT	p.R1500C	CUL9_uc003oul.2_Missense_Mutation_p.R1500C|CUL9_uc010jyk.2_Missense_Mutation_p.R652C	NM_015089	NP_055904	Q8IWT3	CUL9_HUMAN	p53-associated parkin-like cytoplasmic protein	1500					ubiquitin-dependent protein catabolic process	cullin-RING ubiquitin ligase complex|cytoplasm	ATP binding|ubiquitin protein ligase binding|zinc ion binding			ovary(5)|lung(3)|skin(2)|breast(1)|central_nervous_system(1)	12						CTTTGTGCCTCGTTACTGTAA	0.577													49	86					0	0	0.014410	0	0
CUL9	23113	broad.mit.edu	37	6	43173766	43173766	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:43173766C>T	uc003ouk.2	+	25	4890	c.4815C>T	c.(4813-4815)CTC>CTT	p.L1605L	CUL9_uc003oul.2_Silent_p.L1605L|CUL9_uc010jyk.2_Silent_p.L757L	NM_015089	NP_055904	Q8IWT3	CUL9_HUMAN	p53-associated parkin-like cytoplasmic protein	1605					ubiquitin-dependent protein catabolic process	cullin-RING ubiquitin ligase complex|cytoplasm	ATP binding|ubiquitin protein ligase binding|zinc ion binding			ovary(5)|lung(3)|skin(2)|breast(1)|central_nervous_system(1)	12						CGGACCGTCTCCTGAGCTTTG	0.627													18	43					0	0	0.003954	0	0
TTBK1	84630	broad.mit.edu	37	6	43251423	43251423	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:43251423G>A	uc003ouq.1	+	14	3224	c.2945G>A	c.(2944-2946)GGC>GAC	p.G982D		NM_032538	NP_115927	Q5TCY1	TTBK1_HUMAN	tau tubulin kinase 1	982						cell junction|cytoplasm|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			lung(4)|ovary(2)|skin(2)|upper_aerodigestive_tract(1)	9			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0125)|OV - Ovarian serous cystadenocarcinoma(102;0.0399)			CTGGAGAACGGCCTCGCCCTG	0.687													14	32					0	0	0.002450	0	0
TTBK1	84630	broad.mit.edu	37	6	43251647	43251647	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:43251647C>T	uc003ouq.1	+	14	3448	c.3169C>T	c.(3169-3171)CCT>TCT	p.P1057S		NM_032538	NP_115927	Q5TCY1	TTBK1_HUMAN	tau tubulin kinase 1	1057						cell junction|cytoplasm|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			lung(4)|ovary(2)|skin(2)|upper_aerodigestive_tract(1)	9			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0125)|OV - Ovarian serous cystadenocarcinoma(102;0.0399)			GAGCCGTATCCCTGTCCTGCT	0.687													15	23					0	0	0.004990	0	0
SLC22A7	10864	broad.mit.edu	37	6	43271893	43271893	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:43271893C>T	uc003out.2	+	10	1602	c.1503C>T	c.(1501-1503)ATC>ATT	p.I501I	SLC22A7_uc003ous.2_Silent_p.I499I	NM_153320	NP_696961	Q9Y694	S22A7_HUMAN	solute carrier family 22 member 7 isoform b	501	Helical; (Potential).					basolateral plasma membrane|integral to plasma membrane|membrane fraction	anion:anion antiporter activity|sodium-independent organic anion transmembrane transporter activity				0			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.00998)|OV - Ovarian serous cystadenocarcinoma(102;0.0305)			ATGGGGGGATCGCCCTGCTGG	0.652													33	78					0	0	0.003755	0	0
CRIP3	401262	broad.mit.edu	37	6	43273742	43273742	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:43273742C>T	uc010jyn.1	-	7	616	c.616G>A	c.(616-618)GGT>AGT	p.G206S	CRIP3_uc003ouu.1_Intron	NM_206922	NP_996805	Q6Q6R5	CRIP3_HUMAN	cysteine-rich protein 3	206						cytoplasm	zinc ion binding			skin(1)	1			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.00998)|OV - Ovarian serous cystadenocarcinoma(102;0.0305)			ACCCACAGACCATGTACATGC	0.592													21	32					0	0	0.010504	0	0
C6orf154	221424	broad.mit.edu	37	6	43475013	43475013	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:43475013C>T	uc003ovk.1	-	6	1815	c.914G>A	c.(913-915)GGA>GAA	p.G305E	C6orf154_uc003ovj.1_Missense_Mutation_p.G114E	NM_001012974	NP_001012992	Q5JTD7	CF154_HUMAN	hypothetical protein LOC221424	305											0	all_cancers(18;3.79e-05)|Lung NSC(15;0.00217)|all_lung(25;0.00536)		Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.00736)|OV - Ovarian serous cystadenocarcinoma(102;0.0711)			GTCCCCTAGTCCTGACGTCAT	0.537											OREG0017453	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	8	28					0	0	0.004482	0	0
ENPP4	22875	broad.mit.edu	37	6	46108891	46108891	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:46108891G>A	uc003oxy.2	+	3	1188	c.929G>A	c.(928-930)CGA>CAA	p.R310Q		NM_014936	NP_055751	Q9Y6X5	ENPP4_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	310	Extracellular (Potential).					integral to membrane	hydrolase activity			ovary(3)|skin(1)	4						CATAATGATCGAATTCAGCCC	0.323													15	28					0	0	0.004990	0	0
ENPP4	22875	broad.mit.edu	37	6	46111020	46111020	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:46111020C>T	uc003oxy.2	+	4	1264	c.1005C>T	c.(1003-1005)GAC>GAT	p.D335D		NM_014936	NP_055751	Q9Y6X5	ENPP4_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	335	Extracellular (Potential).					integral to membrane	hydrolase activity			ovary(3)|skin(1)	4						CAGTAGGTGACCATGGTTATG	0.358													20	62					0	0	0.004656	0	0
TDRD6	221400	broad.mit.edu	37	6	46657718	46657718	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:46657718C>T	uc003oyj.2	+	1	1853	c.1853C>T	c.(1852-1854)TCC>TTC	p.S618F	TDRD6_uc010jze.2_Missense_Mutation_p.S612F	NM_001010870	NP_001010870	O60522	TDRD6_HUMAN	tudor domain containing 6	618					cell differentiation|multicellular organismal development|spermatogenesis	chromatoid body	nucleic acid binding			breast(3)|ovary(2)|skin(1)	6			Lung(136;0.192)			GAGGCAGTTTCCTTTTTTAAA	0.403													7	28					0	0	0.001984	0	0
TDRD6	221400	broad.mit.edu	37	6	46660326	46660326	+	Silent	SNP	T	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:46660326T>A	uc003oyj.2	+	1	4461	c.4461T>A	c.(4459-4461)CTT>CTA	p.L1487L	TDRD6_uc010jze.2_Silent_p.L1481L	NM_001010870	NP_001010870	O60522	TDRD6_HUMAN	tudor domain containing 6	1487					cell differentiation|multicellular organismal development|spermatogenesis	chromatoid body	nucleic acid binding			breast(3)|ovary(2)|skin(1)	6			Lung(136;0.192)			AAGTAGAACTTTCTACCCAAG	0.343													25	44					0	0	0.003954	0	0
GPR116	221395	broad.mit.edu	37	6	46821784	46821784	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:46821784T>C	uc003oyo.3	-	21	4275	c.3986A>G	c.(3985-3987)GAA>GGA	p.E1329G	GPR116_uc011dwj.1_Missense_Mutation_p.E884G|GPR116_uc011dwk.1_3'UTR|GPR116_uc003oyp.3_Missense_Mutation_p.E1187G|GPR116_uc003oyq.3_Missense_Mutation_p.E1329G	NM_001098518	NP_001091988	Q8IZF2	GP116_HUMAN	G-protein coupled receptor 116 precursor	1329	Cytoplasmic (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(1)|skin(1)	2			Lung(136;0.192)			GCTGGTTGCTTCTGGGGTGGA	0.498													50	98					0	0	0.014410	0	0
GPR111	222611	broad.mit.edu	37	6	47646785	47646785	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:47646785G>A	uc010jzj.1	+	4	387	c.386G>A	c.(385-387)GGA>GAA	p.G129E	GPR111_uc010jzk.1_Missense_Mutation_p.G61E|GPR111_uc003oyy.2_RNA	NM_153839	NP_722581	Q8IZF7	GP111_HUMAN	G-protein coupled receptor 111	129	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			skin(1)	1						GACACTCAGGGAAATATGGGG	0.458													20	28					0	0	0.008871	0	0
CRISP1	167	broad.mit.edu	37	6	49806236	49806236	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:49806236C>T	uc003ozw.2	-	7	615	c.536G>A	c.(535-537)GGA>GAA	p.G179E	CRISP1_uc003ozx.2_Intron	NM_001131	NP_001122	P54107	CRIS1_HUMAN	acidic epididymal glycoprotein-like 1 isoform 1	179					fusion of sperm to egg plasma membrane	extracellular space					0	Lung NSC(77;0.0358)					AGGATCATTTCCCCTTGAATA	0.343													14	57					0	0	0.001855	0	0
DEFB113	245927	broad.mit.edu	37	6	49936573	49936573	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:49936573C>T	uc011dwq.1	-	2	66	c.66G>A	c.(64-66)CAG>CAA	p.Q22Q		NM_001037729	NP_001032818	Q30KQ7	DB113_HUMAN	beta-defensin 113 precursor	22					defense response to bacterium	extracellular region					0	Lung NSC(77;0.042)					TTGTTTTTTTCTGTGGAACTA	0.348													5	19					0	0	0.000602	0	0
PKHD1	5314	broad.mit.edu	37	6	51935805	51935805	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:51935805G>A	uc003pah.1	-	9	942	c.666C>T	c.(664-666)ATC>ATT	p.I222I	PKHD1_uc003pai.2_Silent_p.I222I	NM_138694	NP_619639	P08F94	PKHD1_HUMAN	fibrocystin isoform 1	222	IPT/TIG 2.|Extracellular (Potential).		I -> V (in ARPKD).		cell-cell adhesion|cilium assembly|homeostatic process|kidney development|negative regulation of cellular component movement	anchored to external side of plasma membrane|apical plasma membrane|integral to membrane|microtubule basal body	protein binding|receptor activity			lung(15)|ovary(15)|large_intestine(5)|central_nervous_system(3)|skin(3)|breast(2)|upper_aerodigestive_tract(1)	44	Lung NSC(77;0.0605)					CTAACAGACCGATGTAGTCGC	0.403													13	81					0	0	0.001855	0	0
MCM3	4172	broad.mit.edu	37	6	52141185	52141185	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:52141185G>A	uc003pan.1	-	9	1365	c.1255C>T	c.(1255-1257)CGC>TGC	p.R419C	MCM3_uc011dwu.1_Missense_Mutation_p.R373C	NM_002388	NP_002379	P25205	MCM3_HUMAN	minichromosome maintenance complex component 3	419	MCM.				cell cycle checkpoint|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle	alpha DNA polymerase:primase complex|centrosome|MCM complex|perinuclear region of cytoplasm	ATP binding|DNA binding|helicase activity|protein binding			ovary(1)|lung(1)|skin(1)	3	Lung NSC(77;0.0931)					ATGGCTGTGCGATCCATGTCA	0.567													4	23					0	0	0.009096	0	0
GSTA2	2939	broad.mit.edu	37	6	52617747	52617747	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:52617747G>A	uc003pay.2	-	5	469	c.319C>T	c.(319-321)CTT>TTT	p.L107F		NM_000846	NP_000837	P09210	GSTA2_HUMAN	glutathione S-transferase alpha 2	107	GST C-terminal.				glutathione metabolic process|xenobiotic metabolic process	cytosol	glutathione transferase activity			ovary(1)	1	Lung NSC(77;0.118)				Aminophenazone(DB01424)|Amsacrine(DB00276)|Busulfan(DB01008)|Chlorambucil(DB00291)|Chloroquine(DB00608)|Cinnarizine(DB00568)|Clofibrate(DB00636)|Ethacrynic acid(DB00903)|Glutathione(DB00143)|Mechlorethamine(DB00888)|Praziquantel(DB01058)|Vitamin E(DB00163)	GGCAGAAGAAGGATCATTTCA	0.368													49	95					0	0	0.014410	0	0
GSTA2	2939	broad.mit.edu	37	6	52619770	52619770	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:52619770G>A	uc003pay.2	-	4	393	c.243C>T	c.(241-243)CTC>CTT	p.L81L		NM_000846	NP_000837	P09210	GSTA2_HUMAN	glutathione S-transferase alpha 2	81	GST N-terminal.				glutathione metabolic process|xenobiotic metabolic process	cytosol	glutathione transferase activity			ovary(1)	1	Lung NSC(77;0.118)				Aminophenazone(DB01424)|Amsacrine(DB00276)|Busulfan(DB01008)|Chlorambucil(DB00291)|Chloroquine(DB00608)|Cinnarizine(DB00568)|Clofibrate(DB00636)|Ethacrynic acid(DB00903)|Glutathione(DB00143)|Mechlorethamine(DB00888)|Praziquantel(DB01058)|Vitamin E(DB00163)	CTTTCCCATAGAGGTTGTATT	0.443													27	171					0	0	0.004656	0	0
GSTA5	221357	broad.mit.edu	37	6	52699038	52699038	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:52699038C>T	uc003pba.1	-	5	385	c.315G>A	c.(313-315)ATG>ATA	p.M105I		NM_153699	NP_714543	Q7RTV2	GSTA5_HUMAN	glutathione S-transferase alpha 5	105	GST C-terminal.				glutathione metabolic process|xenobiotic metabolic process	cytosol	glutathione transferase activity			ovary(1)	1	Lung NSC(77;0.0912)				Glutathione(DB00143)	GAAGAAGGATCATTTCAGTCA	0.368													36	68					0	0	0.003271	0	0
C6orf142	90523	broad.mit.edu	37	6	53989330	53989330	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:53989330G>A	uc003pcg.3	+	3	392	c.279G>A	c.(277-279)GCG>GCA	p.A93A	C6orf142_uc003pcf.2_Silent_p.A93A|C6orf142_uc003pch.3_Silent_p.A31A|C6orf142_uc011dwz.1_Silent_p.A52A|C6orf142_uc011dxa.1_Silent_p.A104A	NM_138569	NP_612636	Q5VWP3	MLIP_HUMAN	hypothetical protein LOC90523	93						nuclear envelope|PML body	protein binding				0	Lung NSC(77;0.0317)					GAGACCAAGCGAAATTGACTT	0.403													22	36					0	0	0.002780	0	0
FAM83B	222584	broad.mit.edu	37	6	54805315	54805315	+	Silent	SNP	T	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:54805315T>C	uc003pck.2	+	5	1662	c.1546T>C	c.(1546-1548)TTA>CTA	p.L516L		NM_001010872	NP_001010872	Q5T0W9	FA83B_HUMAN	hypothetical protein LOC222584	516										ovary(6)	6	Lung NSC(77;0.0178)|Renal(3;0.122)					TGGATCAGCTTTAGGTGACCG	0.408													8	43					0	0	0.003080	0	0
FAM83B	222584	broad.mit.edu	37	6	54806620	54806620	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:54806620A>G	uc003pck.2	+	5	2967	c.2851A>G	c.(2851-2853)AGC>GGC	p.S951G		NM_001010872	NP_001010872	Q5T0W9	FA83B_HUMAN	hypothetical protein LOC222584	951										ovary(6)	6	Lung NSC(77;0.0178)|Renal(3;0.122)					TCAGCCAACAAGCAACATGCC	0.438													12	46					0	0	0.010729	0	0
HMGCLL1	54511	broad.mit.edu	37	6	55360232	55360232	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:55360232G>A	uc003pcn.2	-	8	1029	c.870C>T	c.(868-870)ATC>ATT	p.I290I	HMGCLL1_uc003pco.2_Silent_p.I260I|HMGCLL1_uc010jzx.2_Silent_p.I161I|HMGCLL1_uc011dxc.1_Silent_p.I228I|HMGCLL1_uc011dxd.1_Silent_p.I157I|HMGCLL1_uc011dxe.1_Intron	NM_019036	NP_061909	Q8TB92	HMGC2_HUMAN	3-hydroxymethyl-3-methylglutaryl-Coenzyme A	290							hydroxymethylglutaryl-CoA lyase activity|metal ion binding	p.I290F(1)		skin(2)|ovary(1)|pancreas(1)	4	Lung NSC(77;0.0875)		LUSC - Lung squamous cell carcinoma(124;0.23)			GGGCCGTAAGGATATTTGCTA	0.388													10	30					0	0	0.010729	0	0
HMGCLL1	54511	broad.mit.edu	37	6	55378900	55378900	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:55378900C>T	uc003pcn.2	-	6	737	c.578G>A	c.(577-579)GGA>GAA	p.G193E	HMGCLL1_uc003pco.2_Missense_Mutation_p.G163E|HMGCLL1_uc010jzx.2_Missense_Mutation_p.G64E|HMGCLL1_uc011dxc.1_Missense_Mutation_p.G131E|HMGCLL1_uc011dxd.1_Intron|HMGCLL1_uc011dxe.1_Intron|HMGCLL1_uc003pcp.2_Missense_Mutation_p.G131E	NM_019036	NP_061909	Q8TB92	HMGC2_HUMAN	3-hydroxymethyl-3-methylglutaryl-Coenzyme A	193							hydroxymethylglutaryl-CoA lyase activity|metal ion binding			skin(2)|ovary(1)|pancreas(1)	4	Lung NSC(77;0.0875)		LUSC - Lung squamous cell carcinoma(124;0.23)			CTCAAATTTTCCCATACTTTC	0.368													12	41					0	0	0.013537	0	0
HMGCLL1	54511	broad.mit.edu	37	6	55381350	55381350	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:55381350G>A	uc003pcn.2	-	5	598	c.439C>T	c.(439-441)CGC>TGC	p.R147C	HMGCLL1_uc003pco.2_Missense_Mutation_p.R117C|HMGCLL1_uc010jzx.2_Missense_Mutation_p.R18C|HMGCLL1_uc011dxc.1_Intron|HMGCLL1_uc011dxd.1_Intron|HMGCLL1_uc011dxe.1_Intron|HMGCLL1_uc003pcp.2_Intron	NM_019036	NP_061909	Q8TB92	HMGC2_HUMAN	3-hydroxymethyl-3-methylglutaryl-Coenzyme A	147							hydroxymethylglutaryl-CoA lyase activity|metal ion binding			skin(2)|ovary(1)|pancreas(1)	4	Lung NSC(77;0.0875)		LUSC - Lung squamous cell carcinoma(124;0.23)			ACAGGATAGCGAACTCCTGGA	0.343													19	57					0	0	0.012319	0	0
COL21A1	81578	broad.mit.edu	37	6	55929417	55929417	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:55929417G>A	uc003pcs.2	-	24	2363	c.2131C>T	c.(2131-2133)CAA>TAA	p.Q711*	COL21A1_uc010jzz.2_Nonsense_Mutation_p.Q96*|COL21A1_uc011dxg.1_Nonsense_Mutation_p.Q84*|COL21A1_uc011dxh.1_Nonsense_Mutation_p.Q96*|COL21A1_uc003pcr.2_Silent_p.V68V	NM_030820	NP_110447	Q96P44	COLA1_HUMAN	collagen, type XXI, alpha 1 precursor	711	Collagen-like 4.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(2)	2	Lung NSC(77;0.0483)		LUSC - Lung squamous cell carcinoma(124;0.181)			TCTCCCTTTTGACCCTTTAAA	0.323													4	8					0	0	0.000602	0	0
COL21A1	81578	broad.mit.edu	37	6	56035641	56035641	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:56035641G>A	uc003pcs.2	-	5	1064	c.832C>T	c.(832-834)CCT>TCT	p.P278S	COL21A1_uc003pct.1_RNA|COL21A1_uc011dxi.1_Missense_Mutation_p.P278S|COL21A1_uc003pcu.1_Missense_Mutation_p.P278S	NM_030820	NP_110447	Q96P44	COLA1_HUMAN	collagen, type XXI, alpha 1 precursor	278	TSP N-terminal.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(2)	2	Lung NSC(77;0.0483)		LUSC - Lung squamous cell carcinoma(124;0.181)			TATGATGGAGGAAGACCTTCT	0.358													6	24					0	0	0.001168	0	0
COL21A1	81578	broad.mit.edu	37	6	56044403	56044403	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:56044403C>T	uc003pcs.2	-	3	845	c.613G>A	c.(613-615)GAA>AAA	p.E205K	COL21A1_uc003pct.1_RNA|COL21A1_uc011dxi.1_Missense_Mutation_p.E205K|COL21A1_uc003pcu.1_Missense_Mutation_p.E205K	NM_030820	NP_110447	Q96P44	COLA1_HUMAN	collagen, type XXI, alpha 1 precursor	205	VWFA.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(2)	2	Lung NSC(77;0.0483)		LUSC - Lung squamous cell carcinoma(124;0.181)			TTCATCACTTCCCTTATTTTG	0.323													7	31					0	0	0.004482	0	0
COL21A1	81578	broad.mit.edu	37	6	56044907	56044907	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:56044907C>T	uc003pcs.2	-	3	341	c.109G>A	c.(109-111)GAT>AAT	p.D37N	COL21A1_uc003pct.1_RNA|COL21A1_uc011dxi.1_Missense_Mutation_p.D37N|COL21A1_uc003pcu.1_Missense_Mutation_p.D37N	NM_030820	NP_110447	Q96P44	COLA1_HUMAN	collagen, type XXI, alpha 1 precursor	37	VWFA.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(2)	2	Lung NSC(77;0.0483)		LUSC - Lung squamous cell carcinoma(124;0.181)			AAAACTAAATCTGTCGGAGCA	0.333													11	18					0	0	0.008291	0	0
BEND6	221336	broad.mit.edu	37	6	56879998	56879998	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:56879998G>A	uc010kab.2	+	4	952	c.366G>A	c.(364-366)GGG>GGA	p.G122G	BEND6_uc003pdi.3_Silent_p.G24G	NM_152731	NP_689944	Q5SZJ8	BEND6_HUMAN	BEN domain containing 6	122											0						TTAAGGGTGGGGGAACCATGT	0.443													15	25					0	0	0.004007	0	0
KHDRBS2	202559	broad.mit.edu	37	6	62887172	62887172	+	Missense_Mutation	SNP	T	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:62887172T>A	uc003peg.2	-	2	384	c.137A>T	c.(136-138)GAA>GTA	p.E46V		NM_152688	NP_689901	Q5VWX1	KHDR2_HUMAN	KH domain-containing, RNA-binding, signal	46					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	SH3 domain binding			skin(7)|ovary(3)|liver(1)	11				BRCA - Breast invasive adenocarcinoma(397;0.149)		ATACTTCTTTTCTTCGTCTTC	0.333													11	18					0	0	0.010729	0	0
LGSN	51557	broad.mit.edu	37	6	63990547	63990547	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:63990547G>A	uc003peh.2	-	4	943	c.909C>T	c.(907-909)TTC>TTT	p.F303F	LGSN_uc003pei.2_Intron	NM_016571	NP_057655	Q5TDP6	LGSN_HUMAN	lengsin, lens protein with glutamine synthetase	303					glutamine biosynthetic process		glutamate-ammonia ligase activity			skin(2)	2					L-Glutamic Acid(DB00142)	CAGTCTCAATGAAGAAGCTGG	0.423													10	23					0	0	0.006214	0	0
LGSN	51557	broad.mit.edu	37	6	63995607	63995607	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:63995607C>T	uc003peh.2	-	3	249	c.215G>A	c.(214-216)AGA>AAA	p.R72K	LGSN_uc003pei.2_Missense_Mutation_p.R72K|LGSN_uc003pej.1_Intron	NM_016571	NP_057655	Q5TDP6	LGSN_HUMAN	lengsin, lens protein with glutamine synthetase	72					glutamine biosynthetic process		glutamate-ammonia ligase activity			skin(2)	2					L-Glutamic Acid(DB00142)	GTGTTTCATTCTAGAAGAGAG	0.438													14	29					0	0	0.003163	0	0
PHF3	23469	broad.mit.edu	37	6	64422871	64422871	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:64422871C>T	uc003pep.1	+	15	5413	c.5387C>T	c.(5386-5388)TCA>TTA	p.S1796L	PHF3_uc003pen.2_Missense_Mutation_p.S1708L|PHF3_uc011dxs.1_Missense_Mutation_p.S1065L	NM_015153	NP_055968	Q92576	PHF3_HUMAN	PHD finger protein 3	1796					multicellular organismal development|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(3)|lung(1)|skin(1)	5	all_cancers(3;0.0241)|all_epithelial(2;0.00306)|Lung NSC(77;0.121)		LUSC - Lung squamous cell carcinoma(74;0.0644)|Lung(124;0.148)			ACAAACTTTTCACCCATGAGG	0.458													29	49					0	0	0.012213	0	0
MCART3P	442229	broad.mit.edu	37	6	66499149	66499149	+	RNA	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:66499149C>T	uc011dxw.1	+	1		c.1378C>T				NR_026540				Homo sapiens mitochondrial carrier triple repeat 3 pseudogene, mRNA (cDNA clone IMAGE:4821649).												0						TCCCTTATCTCTTAGAGCATA	0.363													4	6					0	0	0.009096	0	0
BAI3	577	broad.mit.edu	37	6	70048811	70048811	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:70048811G>A	uc003pev.3	+	25	3640	c.3192G>A	c.(3190-3192)CAG>CAA	p.Q1064Q	BAI3_uc010kak.2_Silent_p.Q1064Q|BAI3_uc011dxx.1_Silent_p.Q270Q|BAI3_uc003pex.1_Silent_p.Q194Q	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	1064	Cytoplasmic (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				TTTGCAGTCAGATGAGTGAGC	0.408													63	147					0	0	0.014410	0	0
BAI3	577	broad.mit.edu	37	6	70064192	70064192	+	Missense_Mutation	SNP	C	T	T	rs142863825		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:70064192C>T	uc003pev.3	+	27	3975	c.3527C>T	c.(3526-3528)TCG>TTG	p.S1176L	BAI3_uc010kak.2_Missense_Mutation_p.S1176L|BAI3_uc011dxx.1_Missense_Mutation_p.S382L	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	1176	Poly-Ser.|Cytoplasmic (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				TCTTCGAGTTCGTTTCCTAAT	0.393													23	82					0	0	0.004656	0	0
BAI3	577	broad.mit.edu	37	6	70065752	70065752	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:70065752G>A	uc003pev.3	+	28	4043	c.3595G>A	c.(3595-3597)GTT>ATT	p.V1199I	BAI3_uc010kak.2_Missense_Mutation_p.V1199I|BAI3_uc011dxx.1_Missense_Mutation_p.V405I	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	1199	Cytoplasmic (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				CTGTCGATCAGGTAAGAATAT	0.289													45	100					0	0	0.014410	0	0
COL19A1	1310	broad.mit.edu	37	6	70840075	70840075	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:70840075G>A	uc003pfc.1	+	18	1460	c.1343G>A	c.(1342-1344)GGA>GAA	p.G448E	COL19A1_uc010kam.1_Missense_Mutation_p.G344E	NM_001858	NP_001849	Q14993	COJA1_HUMAN	alpha 1 type XIX collagen precursor	448	Triple-helical region 3 (COL3).				cell differentiation|cell-cell adhesion|extracellular matrix organization|skeletal system development	collagen	extracellular matrix structural constituent|protein binding, bridging			ovary(2)|breast(2)	4						CACCCCTAGGGAAATGATGAA	0.254													6	11					0	0	0.001984	0	0
COL19A1	1310	broad.mit.edu	37	6	70866042	70866042	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:70866042C>T	uc003pfc.1	+	32	2220	c.2103C>T	c.(2101-2103)GCC>GCT	p.A701A	COL19A1_uc010kam.1_Silent_p.A597A	NM_001858	NP_001849	Q14993	COJA1_HUMAN	alpha 1 type XIX collagen precursor	701	Triple-helical region 4 (COL4).				cell differentiation|cell-cell adhesion|extracellular matrix organization|skeletal system development	collagen	extracellular matrix structural constituent|protein binding, bridging			ovary(2)|breast(2)	4						ACTGCCAAGCCAGTGTCCCAG	0.468													5	23					0	0	0.001168	0	0
COL9A1	1297	broad.mit.edu	37	6	70944264	70944264	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:70944264C>T	uc003pfg.3	-	35	2451	c.2292G>A	c.(2290-2292)CAG>CAA	p.Q764Q	COL9A1_uc003pfe.3_Silent_p.Q313Q|COL9A1_uc003pff.3_Silent_p.Q521Q	NM_001851	NP_001842	P20849	CO9A1_HUMAN	alpha 1 type IX collagen isoform 1 precursor	764	Nonhelical region (NC2).				axon guidance|cell adhesion|organ morphogenesis	collagen type IX	metal ion binding			ovary(4)	4						TCATGCAAACCTGCTTAATGT	0.353													6	14					0	0	0.001984	0	0
COL9A1	1297	broad.mit.edu	37	6	71004099	71004099	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:71004099G>A	uc003pfg.3	-	5	626	c.467C>T	c.(466-468)TCA>TTA	p.S156L		NM_001851	NP_001842	P20849	CO9A1_HUMAN	alpha 1 type IX collagen isoform 1 precursor	156	Nonhelical region (NC4).|TSP N-terminal.				axon guidance|cell adhesion|organ morphogenesis	collagen type IX	metal ion binding			ovary(4)	4						TCCCTTGTATGAAAATACAAC	0.433													37	52					0	0	0.005524	0	0
OGFRL1	79627	broad.mit.edu	37	6	72011334	72011334	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:72011334G>A	uc003pfx.1	+	7	1101	c.938G>A	c.(937-939)GGA>GAA	p.G313E		NM_024576	NP_078852	Q5TC84	OGRL1_HUMAN	opioid growth factor receptor-like 1	313						membrane	receptor activity				0						TTTATCTGGGGACCGCCTCGA	0.463													13	33					0	0	0.001855	0	0
RIMS1	22999	broad.mit.edu	37	6	72967929	72967929	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:72967929C>T	uc003pga.2	+	17	2949	c.2872C>T	c.(2872-2874)CGC>TGC	p.R958C	RIMS1_uc011dyb.1_Missense_Mutation_p.R583C|RIMS1_uc003pgc.2_Missense_Mutation_p.R584C|RIMS1_uc010kaq.2_Missense_Mutation_p.R431C|RIMS1_uc011dyc.1_Missense_Mutation_p.R432C|RIMS1_uc010kar.2_Missense_Mutation_p.R351C|RIMS1_uc011dyd.1_Missense_Mutation_p.R417C|RIMS1_uc003pgf.2_Missense_Mutation_p.R174C|RIMS1_uc003pgg.2_Missense_Mutation_p.R175C|RIMS1_uc003pgi.2_Missense_Mutation_p.R174C|RIMS1_uc003pgh.2_Missense_Mutation_p.R174C|RIMS1_uc003pgd.2_Missense_Mutation_p.R175C|RIMS1_uc003pge.2_Missense_Mutation_p.R175C|RIMS1_uc011dye.1_5'UTR|RIMS1_uc011dyf.1_5'Flank|RIMS1_uc003pgb.3_Missense_Mutation_p.R584C|RIMS1_uc010kas.1_Missense_Mutation_p.R417C	NM_014989	NP_055804	Q86UR5	RIMS1_HUMAN	regulating synaptic membrane exocytosis 1	958					calcium ion-dependent exocytosis|cellular membrane fusion|glutamate secretion|intracellular protein transport|protein complex assembly|regulated secretory pathway|response to stimulus|synaptic vesicle exocytosis|visual perception	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(7)|pancreas(2)|breast(1)	10		all_epithelial(107;0.179)|all_hematologic(105;0.212)				ATCTCCTCATCGCGGCAATGA	0.448													9	22					0	0	0.004482	0	0
RIMS1	22999	broad.mit.edu	37	6	73102446	73102446	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:73102446G>A	uc003pga.2	+	31	4629	c.4552G>A	c.(4552-4554)GAT>AAT	p.D1518N	RIMS1_uc011dyb.1_Missense_Mutation_p.D915N|RIMS1_uc003pgc.2_Missense_Mutation_p.D967N|RIMS1_uc010kaq.2_Missense_Mutation_p.D838N|RIMS1_uc011dyc.1_Missense_Mutation_p.D643N|RIMS1_uc010kar.2_Missense_Mutation_p.D586N|RIMS1_uc011dyd.1_Missense_Mutation_p.D652N|RIMS1_uc003pgf.2_Missense_Mutation_p.D518N|RIMS1_uc003pgg.2_Missense_Mutation_p.D414N|RIMS1_uc003pgi.2_Missense_Mutation_p.D334N|RIMS1_uc003pgh.2_Missense_Mutation_p.D385N|RIMS1_uc003pgd.2_Missense_Mutation_p.D584N|RIMS1_uc003pge.2_Missense_Mutation_p.D558N|RIMS1_uc011dye.1_Missense_Mutation_p.D324N|RIMS1_uc011dyf.1_Missense_Mutation_p.D142N|RIMS1_uc011dyg.1_Missense_Mutation_p.D45N	NM_014989	NP_055804	Q86UR5	RIMS1_HUMAN	regulating synaptic membrane exocytosis 1	1518					calcium ion-dependent exocytosis|cellular membrane fusion|glutamate secretion|intracellular protein transport|protein complex assembly|regulated secretory pathway|response to stimulus|synaptic vesicle exocytosis|visual perception	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(7)|pancreas(2)|breast(1)	10		all_epithelial(107;0.179)|all_hematologic(105;0.212)				TCAATTCAGTGATTTTCTTGA	0.408													29	44					0	0	0.006999	0	0
KCNQ5	56479	broad.mit.edu	37	6	73787056	73787056	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:73787056C>T	uc003pgk.2	+	4	975	c.628C>T	c.(628-630)CTT>TTT	p.L210F	KCNQ5_uc003pgj.3_Missense_Mutation_p.L210F|KCNQ5_uc011dyh.1_Missense_Mutation_p.L210F|KCNQ5_uc011dyi.1_Missense_Mutation_p.L210F|KCNQ5_uc010kat.2_Missense_Mutation_p.L210F|KCNQ5_uc011dyj.1_Missense_Mutation_p.L210F|KCNQ5_uc011dyk.1_5'UTR	NM_019842	NP_062816	Q9NR82	KCNQ5_HUMAN	potassium voltage-gated channel, KQT-like	210	Helical; Name=Segment S3; (Potential).				protein complex assembly|synaptic transmission	voltage-gated potassium channel complex	inward rectifier potassium channel activity			ovary(4)|large_intestine(2)|skin(1)	7		all_epithelial(107;0.116)|Lung NSC(302;0.219)		COAD - Colon adenocarcinoma(1;0.0107)|Colorectal(1;0.0583)		TACCATTGTTCTTATCGCTTC	0.403													22	45					0	0	0.004656	0	0
KHDC1	80759	broad.mit.edu	37	6	73951256	73951256	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:73951256G>A	uc003pgo.2	-	5	1211	c.710C>T	c.(709-711)CCG>CTG	p.P237L	KHDC1_uc011dyl.1_Intron|KHDC1_uc003pgn.3_Missense_Mutation_p.P164L	NM_030568	NP_085045	Q4VXA5	KHDC1_HUMAN	KH homology domain containing 1	237						integral to membrane	RNA binding			skin(1)	1						CCTTAATTACGGATACAGTGA	0.468													33	61					0	0	0.003755	0	0
DDX43	55510	broad.mit.edu	37	6	74117797	74117797	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:74117797C>T	uc003pgw.2	+	9	1496	c.1152C>T	c.(1150-1152)TTC>TTT	p.F384F	DDX43_uc011dyn.1_RNA	NM_018665	NP_061135	Q9NXZ2	DDX43_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 43	384	Helicase ATP-binding.					intracellular	ATP binding|ATP-dependent RNA helicase activity|RNA binding			ovary(2)|upper_aerodigestive_tract(1)|skin(1)	4						TGAGTAACTTCGTCAATCTGA	0.318													18	25					0	0	0.008871	0	0
C6orf150	115004	broad.mit.edu	37	6	74135297	74135297	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:74135297C>T	uc003pgx.1	-	5	1361	c.1222G>A	c.(1222-1224)GAT>AAT	p.D408N		NM_138441	NP_612450	Q8N884	M21D1_HUMAN	hypothetical protein LOC115004	408											0						TTTAAACAATCTTTCCTGTTG	0.259													7	7					0	0	0.001984	0	0
COL12A1	1303	broad.mit.edu	37	6	75828869	75828869	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:75828869A>G	uc003phs.2	-	46	7410	c.7244T>C	c.(7243-7245)TTG>TCG	p.L2415S	COL12A1_uc003pht.2_Missense_Mutation_p.L1251S	NM_004370	NP_004361	Q99715	COCA1_HUMAN	collagen, type XII, alpha 1 long isoform	2415	VWFA 4.				cell adhesion|collagen fibril organization|skeletal system development	collagen type XII|extracellular space	extracellular matrix structural constituent conferring tensile strength			ovary(6)|large_intestine(1)|breast(1)|skin(1)	9						CTCCCAAGTCAAGACTTTCTC	0.493													24	38					0	0	0.002780	0	0
COL12A1	1303	broad.mit.edu	37	6	75857400	75857400	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:75857400C>T	uc003phs.2	-	23	4574	c.4408G>A	c.(4408-4410)GAA>AAA	p.E1470K	COL12A1_uc003pht.2_Missense_Mutation_p.E306K	NM_004370	NP_004361	Q99715	COCA1_HUMAN	collagen, type XII, alpha 1 long isoform	1470	Fibronectin type-III 9.				cell adhesion|collagen fibril organization|skeletal system development	collagen type XII|extracellular space	extracellular matrix structural constituent conferring tensile strength			ovary(6)|large_intestine(1)|breast(1)|skin(1)	9						CAGGTTTTTTCTGTCCCCTTC	0.363													13	83					0	0	0.002450	0	0
COL12A1	1303	broad.mit.edu	37	6	75899049	75899049	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:75899049C>T	uc003phs.2	-	7	873	c.707G>A	c.(706-708)GGG>GAG	p.G236E	COL12A1_uc003pht.2_Intron|COL12A1_uc003phu.1_5'Flank	NM_004370	NP_004361	Q99715	COCA1_HUMAN	collagen, type XII, alpha 1 long isoform	236	VWFA 1.				cell adhesion|collagen fibril organization|skeletal system development	collagen type XII|extracellular space	extracellular matrix structural constituent conferring tensile strength			ovary(6)|large_intestine(1)|breast(1)|skin(1)	9						AACTCTTGCCCCAGCAGATTC	0.378													7	22					0	0	0.001984	0	0
FILIP1	27145	broad.mit.edu	37	6	76022532	76022532	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:76022532G>A	uc003pia.2	-	5	3389	c.3016C>T	c.(3016-3018)CCT>TCT	p.P1006S	FILIP1_uc003phy.1_Missense_Mutation_p.P1006S|FILIP1_uc003phz.2_Missense_Mutation_p.P907S|FILIP1_uc010kbe.2_Missense_Mutation_p.P1009S|FILIP1_uc003pib.1_Missense_Mutation_p.P758S	NM_015687	NP_056502	Q7Z7B0	FLIP1_HUMAN	filamin A interacting protein 1	1006										skin(3)|ovary(1)	4						ATCTGAATAGGGGATGTGGGC	0.507													27	67					0	0	0.007291	0	0
FILIP1	27145	broad.mit.edu	37	6	76024179	76024179	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:76024179C>T	uc003pia.2	-	5	1742	c.1369G>A	c.(1369-1371)GAG>AAG	p.E457K	FILIP1_uc003phy.1_Missense_Mutation_p.E457K|FILIP1_uc003phz.2_Missense_Mutation_p.E358K|FILIP1_uc010kbe.2_Missense_Mutation_p.E460K|FILIP1_uc003pib.1_Missense_Mutation_p.E209K	NM_015687	NP_056502	Q7Z7B0	FLIP1_HUMAN	filamin A interacting protein 1	457	Potential.									skin(3)|ovary(1)	4						TTTTCTTTCTCCAGATTTAAA	0.378													26	61					0	0	0.006320	0	0
MYO6	4646	broad.mit.edu	37	6	76576731	76576731	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:76576731G>A	uc003pih.1	+	18	2132	c.1853G>A	c.(1852-1854)CGG>CAG	p.R618Q	MYO6_uc003pig.1_Missense_Mutation_p.R618Q|MYO6_uc003pii.1_Missense_Mutation_p.R618Q	NM_004999	NP_004990	Q9UM54	MYO6_HUMAN	myosin VI	618	Myosin head-like.				actin filament-based movement|DNA damage response, signal transduction by p53 class mediator|endocytosis|intracellular protein transport|positive regulation of transcription from RNA polymerase II promoter|regulation of secretion|sensory perception of sound|synaptic transmission	cell cortex|clathrin coated vesicle membrane|coated pit|cytosol|DNA-directed RNA polymerase II, holoenzyme|filamentous actin|Golgi apparatus|nuclear membrane|perinuclear region of cytoplasm|ruffle membrane|unconventional myosin complex	actin filament binding|ADP binding|ATP binding|calmodulin binding|minus-end directed microfilament motor activity|protein binding			kidney(1)|pancreas(1)	2		all_hematologic(105;0.189)		BRCA - Breast invasive adenocarcinoma(397;0.223)		AAGTTTATACGGGAATTATTT	0.318													6	35					0	0	0.001168	0	0
IMPG1	3617	broad.mit.edu	37	6	76751661	76751661	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:76751661C>T	uc003pik.1	-	2	380	c.250G>A	c.(250-252)GAA>AAA	p.E84K		NM_001563	NP_001554	Q17R60	IMPG1_HUMAN	interphotoreceptor matrix proteoglycan 1	84					visual perception	proteinaceous extracellular matrix	extracellular matrix structural constituent|receptor activity			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(125;0.0418)|all_hematologic(105;0.222)				TTCATGGATTCCTGTGGACAG	0.383													15	45					0	0	0.008871	0	0
IMPG1	3617	broad.mit.edu	37	6	76751728	76751728	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:76751728G>A	uc003pik.1	-	2	313	c.183C>T	c.(181-183)TTC>TTT	p.F61F		NM_001563	NP_001554	Q17R60	IMPG1_HUMAN	interphotoreceptor matrix proteoglycan 1	61					visual perception	proteinaceous extracellular matrix	extracellular matrix structural constituent|receptor activity			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(125;0.0418)|all_hematologic(105;0.222)				TTGCCAAATCGAATATTCGTC	0.368													22	61					0	0	0.012319	0	0
IMPG1	3617	broad.mit.edu	37	6	76751789	76751789	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:76751789C>T	uc003pik.1	-	2	252	c.122G>A	c.(121-123)AGA>AAA	p.R41K		NM_001563	NP_001554	Q17R60	IMPG1_HUMAN	interphotoreceptor matrix proteoglycan 1	41					visual perception	proteinaceous extracellular matrix	extracellular matrix structural constituent|receptor activity			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(125;0.0418)|all_hematologic(105;0.222)				TGTTTCATTTCTTGGGGGATT	0.318													27	57					0	0	0.009535	0	0
LCA5	167691	broad.mit.edu	37	6	80197078	80197078	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:80197078G>A	uc003pix.2	-	8	2172	c.1737C>T	c.(1735-1737)TTC>TTT	p.F579F	LCA5_uc003piy.2_Silent_p.F579F	NM_001122769	NP_001116241	Q86VQ0	LCA5_HUMAN	Leber congenital amaurosis 5	579					protein transport	cilium axoneme|microtubule basal body	protein binding				0		all_cancers(76;3.32e-05)|Acute lymphoblastic leukemia(125;1.1e-05)|all_hematologic(105;0.00117)|all_epithelial(107;0.0176)		BRCA - Breast invasive adenocarcinoma(397;0.0657)		TGTTTCTTTGGAAATCCAAAA	0.353													15	41					0	0	0.003163	0	0
DOPEY1	23033	broad.mit.edu	37	6	83828678	83828678	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:83828678G>A	uc003pjs.1	+	8	1112	c.852G>A	c.(850-852)CTG>CTA	p.L284L	DOPEY1_uc011dyy.1_Silent_p.L284L|DOPEY1_uc010kbl.1_Silent_p.L284L	NM_015018	NP_055833	Q5JWR5	DOP1_HUMAN	dopey family member 1	284					protein transport					ovary(2)|breast(1)|central_nervous_system(1)	4		all_cancers(76;2.29e-06)|Acute lymphoblastic leukemia(125;3.41e-06)|all_hematologic(105;0.000865)|all_epithelial(107;0.00203)		BRCA - Breast invasive adenocarcinoma(397;0.053)		ATATGTCTCTGAATCGAAGAC	0.423													40	59					0	0	0.010771	0	0
DOPEY1	23033	broad.mit.edu	37	6	83869520	83869520	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:83869520C>T	uc003pjs.1	+	37	7063	c.6803C>T	c.(6802-6804)TCA>TTA	p.S2268L	DOPEY1_uc011dyy.1_Missense_Mutation_p.S2259L|DOPEY1_uc010kbl.1_Missense_Mutation_p.S2259L|DOPEY1_uc003pjt.2_RNA	NM_015018	NP_055833	Q5JWR5	DOP1_HUMAN	dopey family member 1	2268					protein transport					ovary(2)|breast(1)|central_nervous_system(1)	4		all_cancers(76;2.29e-06)|Acute lymphoblastic leukemia(125;3.41e-06)|all_hematologic(105;0.000865)|all_epithelial(107;0.00203)		BRCA - Breast invasive adenocarcinoma(397;0.053)		TACAGGACTTCAGGGCCCTCT	0.463													20	49					0	0	0.012319	0	0
ME1	4199	broad.mit.edu	37	6	83933564	83933564	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:83933564G>A	uc003pjy.2	-	12	1470	c.1364C>T	c.(1363-1365)TCC>TTC	p.S455F	ME1_uc011dzb.1_Missense_Mutation_p.S380F|ME1_uc011dzc.1_Missense_Mutation_p.S289F	NM_002395	NP_002386	P48163	MAOX_HUMAN	cytosolic malic enzyme 1	455					carbohydrate metabolic process|cellular lipid metabolic process|malate metabolic process|NADP biosynthetic process|response to carbohydrate stimulus|response to hormone stimulus	cytosol	ADP binding|electron carrier activity|malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity|manganese ion binding|NAD binding|NADP binding			upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(76;1.28e-06)|Acute lymphoblastic leukemia(125;5.03e-07)|all_hematologic(105;0.000238)|all_epithelial(107;0.00218)		BRCA - Breast invasive adenocarcinoma(397;0.0641)	NADH(DB00157)	GAACACATAGGAATTGTTGCC	0.453													7	17					0	0	0.001984	0	0
PRSS35	167681	broad.mit.edu	37	6	84233867	84233867	+	Missense_Mutation	SNP	C	T	T	rs145431726		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:84233867C>T	uc003pjz.2	+	2	870	c.707C>T	c.(706-708)TCT>TTT	p.S236F	PRSS35_uc010kbm.2_Missense_Mutation_p.S236F	NM_153362	NP_699193	Q8N3Z0	PRS35_HUMAN	protease, serine, 35 precursor	236	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			ovary(1)	1		all_cancers(76;0.000113)|Acute lymphoblastic leukemia(125;1.09e-08)|all_hematologic(105;3.12e-05)|all_epithelial(107;0.0575)		BRCA - Breast invasive adenocarcinoma(397;0.0768)		AGAAAAAAATCTGGCCGGGGT	0.572													9	28					0	0	0.006214	0	0
SNAP91	9892	broad.mit.edu	37	6	84311040	84311040	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:84311040G>A	uc011dze.1	-	15	1591	c.1274C>T	c.(1273-1275)TCC>TTC	p.S425F	SNAP91_uc011dzd.1_5'UTR|SNAP91_uc003pkb.2_Missense_Mutation_p.S388F|SNAP91_uc003pkc.2_Missense_Mutation_p.S423F|SNAP91_uc003pkd.2_Intron|SNAP91_uc003pka.2_Missense_Mutation_p.S423F	NM_014841	NP_055656	O60641	AP180_HUMAN	synaptosomal-associated protein, 91kDa homolog	425	Ala-rich.				clathrin coat assembly	clathrin coat|coated pit|plasma membrane	1-phosphatidylinositol binding|clathrin binding			ovary(1)	1		all_cancers(76;0.000243)|Acute lymphoblastic leukemia(125;2.91e-07)|all_hematologic(105;0.000337)|all_epithelial(107;0.0575)		BRCA - Breast invasive adenocarcinoma(397;0.0967)		TGTAGTAGTGGAGGCAGAAGC	0.448													12	10					0	0	0.010729	0	0
MRAP2	112609	broad.mit.edu	37	6	84765107	84765107	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:84765107G>A	uc003pkg.3	+	2	260	c.70G>A	c.(70-72)GAA>AAA	p.E24K	MRAP2_uc010kbo.2_5'UTR	NM_138409	NP_612418	Q96G30	MRAP2_HUMAN	melanocortin 2 receptor accessory protein 2	24					positive regulation of cAMP biosynthetic process|protein localization at cell surface	endoplasmic reticulum|plasma membrane	corticotropin hormone receptor binding|type 1 melanocortin receptor binding|type 3 melanocortin receptor binding|type 4 melanocortin receptor binding|type 5 melanocortin receptor binding			skin(2)	2						TTACACCTGGGAATATGAATA	0.393													21	43					0	0	0.008871	0	0
MRAP2	112609	broad.mit.edu	37	6	84799011	84799011	+	Silent	SNP	A	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:84799011A>G	uc003pkg.3	+	4	619	c.429A>G	c.(427-429)CAA>CAG	p.Q143Q	MRAP2_uc010kbo.2_Silent_p.Q57Q	NM_138409	NP_612418	Q96G30	MRAP2_HUMAN	melanocortin 2 receptor accessory protein 2	143					positive regulation of cAMP biosynthetic process|protein localization at cell surface	endoplasmic reticulum|plasma membrane	corticotropin hormone receptor binding|type 1 melanocortin receptor binding|type 3 melanocortin receptor binding|type 4 melanocortin receptor binding|type 5 melanocortin receptor binding			skin(2)	2						GTGACGTCCAACTCCAGGAAG	0.522													19	57					0	0	0.007413	0	0
MRAP2	112609	broad.mit.edu	37	6	84799172	84799172	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:84799172C>T	uc003pkg.3	+	4	780	c.590C>T	c.(589-591)TCC>TTC	p.S197F	MRAP2_uc010kbo.2_Missense_Mutation_p.S111F	NM_138409	NP_612418	Q96G30	MRAP2_HUMAN	melanocortin 2 receptor accessory protein 2	197					positive regulation of cAMP biosynthetic process|protein localization at cell surface	endoplasmic reticulum|plasma membrane	corticotropin hormone receptor binding|type 1 melanocortin receptor binding|type 3 melanocortin receptor binding|type 4 melanocortin receptor binding|type 5 melanocortin receptor binding			skin(2)	2						AAGCCACTTTCCCAGACCTCA	0.423													19	44					0	0	0.010504	0	0
TBX18	9096	broad.mit.edu	37	6	85446431	85446431	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:85446431G>A	uc003pkl.1	-	8	1796	c.1796C>T	c.(1795-1797)TCA>TTA	p.S599L	TBX18_uc010kbq.1_Intron	NM_001080508	NP_001073977	O95935	TBX18_HUMAN	T-box 18	599					multicellular organismal development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)|pancreas(2)|lung(1)	5		all_cancers(76;0.000283)|Acute lymphoblastic leukemia(125;3.66e-08)|all_hematologic(105;8.61e-05)|all_epithelial(107;0.0858)		BRCA - Breast invasive adenocarcinoma(108;0.0267)		TACTTGAGATGATGACAGAGT	0.428													21	37					0	0	0.003330	0	0
TBX18	9096	broad.mit.edu	37	6	85446756	85446756	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:85446756C>T	uc003pkl.1	-	8	1471	c.1471G>A	c.(1471-1473)GGA>AGA	p.G491R	TBX18_uc010kbq.1_Intron	NM_001080508	NP_001073977	O95935	TBX18_HUMAN	T-box 18	491					multicellular organismal development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)|pancreas(2)|lung(1)	5		all_cancers(76;0.000283)|Acute lymphoblastic leukemia(125;3.66e-08)|all_hematologic(105;8.61e-05)|all_epithelial(107;0.0858)		BRCA - Breast invasive adenocarcinoma(108;0.0267)		GGGGACATTCCCGAAATCTGC	0.532													49	114					0	0	0.014410	0	0
TBX18	9096	broad.mit.edu	37	6	85446758	85446758	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:85446758G>A	uc003pkl.1	-	8	1469	c.1469C>T	c.(1468-1470)TCG>TTG	p.S490L	TBX18_uc010kbq.1_Intron	NM_001080508	NP_001073977	O95935	TBX18_HUMAN	T-box 18	490					multicellular organismal development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)|pancreas(2)|lung(1)	5		all_cancers(76;0.000283)|Acute lymphoblastic leukemia(125;3.66e-08)|all_hematologic(105;8.61e-05)|all_epithelial(107;0.0858)		BRCA - Breast invasive adenocarcinoma(108;0.0267)		GGACATTCCCGAAATCTGCAT	0.527													46	112					0	0	0.014410	0	0
TBX18	9096	broad.mit.edu	37	6	85466564	85466564	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:85466564C>T	uc003pkl.1	-	4	623	c.623G>A	c.(622-624)TGG>TAG	p.W208*	TBX18_uc010kbq.1_Nonsense_Mutation_p.W50*	NM_001080508	NP_001073977	O95935	TBX18_HUMAN	T-box 18	208	T-box.				multicellular organismal development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)|pancreas(2)|lung(1)	5		all_cancers(76;0.000283)|Acute lymphoblastic leukemia(125;3.66e-08)|all_hematologic(105;8.61e-05)|all_epithelial(107;0.0858)		BRCA - Breast invasive adenocarcinoma(108;0.0267)		TGCCACCATCCATTTCGAACT	0.483													14	21					0	0	0.004007	0	0
ZNF292	23036	broad.mit.edu	37	6	87964474	87964474	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:87964474C>T	uc003plm.3	+	8	1168	c.1127C>T	c.(1126-1128)TCA>TTA	p.S376L		NM_015021	NP_055836	O60281	ZN292_HUMAN	zinc finger protein 292	376					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)	4		all_cancers(76;3.82e-09)|Prostate(29;1.34e-10)|Acute lymphoblastic leukemia(125;2.17e-10)|all_hematologic(105;1.08e-06)|all_epithelial(107;5.31e-05)		BRCA - Breast invasive adenocarcinoma(108;0.0199)		AAGACCATTTCATGTTTGTTG	0.403													21	53					0	0	0.002780	0	0
C6orf165	154313	broad.mit.edu	37	6	88144730	88144730	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:88144730G>A	uc003plv.2	+	11	1545	c.1453G>A	c.(1453-1455)GAA>AAA	p.E485K	SLC35A1_uc003plx.2_5'Flank|C6orf165_uc003plw.2_Missense_Mutation_p.E297K|C6orf165_uc010kbv.1_RNA|C6orf165_uc003plu.1_Missense_Mutation_p.E485K	NM_001031743	NP_001026913	Q8IYR0	CF165_HUMAN	hypothetical protein LOC154313 isoform 1	485										central_nervous_system(1)	1		all_cancers(76;3.93e-06)|Acute lymphoblastic leukemia(125;3.55e-10)|Prostate(29;3.51e-09)|all_hematologic(105;3.29e-06)|all_epithelial(107;0.00575)		BRCA - Breast invasive adenocarcinoma(108;0.0419)		TCAACTATTGGAACTTCATCA	0.269													19	36					0	0	0.007413	0	0
GJA10	84694	broad.mit.edu	37	6	90604965	90604965	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:90604965C>T	uc011eaa.1	+	1	778	c.778C>T	c.(778-780)CAT>TAT	p.H260Y		NM_032602	NP_115991	Q969M2	CXA10_HUMAN	gap junction protein, alpha 10	260	Cytoplasmic (Potential).				synaptic transmission	connexon complex|integral to membrane	gap junction channel activity				0		all_cancers(76;5.71e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00527)		BRCA - Breast invasive adenocarcinoma(108;0.0915)		CCCTCCATTCCATTTGAAGAA	0.398													15	35					0	0	0.002450	0	0
EPHA7	2045	broad.mit.edu	37	6	93965749	93965749	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:93965749C>T	uc003poe.2	-	13	2420	c.2179G>A	c.(2179-2181)GAT>AAT	p.D727N	EPHA7_uc003pof.2_Missense_Mutation_p.D722N|EPHA7_uc011eac.1_Missense_Mutation_p.D723N	NM_004440	NP_004431	Q15375	EPHA7_HUMAN	ephrin receptor EphA7 precursor	727	Cytoplasmic (Potential).|Protein kinase.					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|ovary(7)|upper_aerodigestive_tract(3)|central_nervous_system(3)|skin(3)|large_intestine(2)|stomach(1)|pancreas(1)	28		all_cancers(76;7.47e-10)|Acute lymphoblastic leukemia(125;1.88e-09)|all_hematologic(75;1.75e-07)|all_epithelial(107;3.6e-05)|Lung NSC(302;0.0368)|all_lung(197;0.0509)|Colorectal(196;0.142)		BRCA - Breast invasive adenocarcinoma(108;0.0847)		AATTGCCCATCATGTTTCTGC	0.393													14	20					0	0	0.001855	0	0
EPHA7	2045	broad.mit.edu	37	6	93967835	93967835	+	Missense_Mutation	SNP	C	T	T	rs138518092		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:93967835C>T	uc003poe.2	-	11	2333	c.2092G>A	c.(2092-2094)GAA>AAA	p.E698K	EPHA7_uc003pof.2_Missense_Mutation_p.E693K|EPHA7_uc011eac.1_Missense_Mutation_p.E694K	NM_004440	NP_004431	Q15375	EPHA7_HUMAN	ephrin receptor EphA7 precursor	698	Cytoplasmic (Potential).|Protein kinase.					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|ovary(7)|upper_aerodigestive_tract(3)|central_nervous_system(3)|skin(3)|large_intestine(2)|stomach(1)|pancreas(1)	28		all_cancers(76;7.47e-10)|Acute lymphoblastic leukemia(125;1.88e-09)|all_hematologic(75;1.75e-07)|all_epithelial(107;3.6e-05)|Lung NSC(302;0.0368)|all_lung(197;0.0509)|Colorectal(196;0.142)		BRCA - Breast invasive adenocarcinoma(108;0.0847)		ACAACCCCTTCCAAATGGACA	0.343													12	32					0	0	0.010729	0	0
EPHA7	2045	broad.mit.edu	37	6	93967867	93967867	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:93967867C>T	uc003poe.2	-	11	2301	c.2060G>A	c.(2059-2061)GGG>GAG	p.G687E	EPHA7_uc003pof.2_Missense_Mutation_p.G682E|EPHA7_uc011eac.1_Missense_Mutation_p.G683E	NM_004440	NP_004431	Q15375	EPHA7_HUMAN	ephrin receptor EphA7 precursor	687	Cytoplasmic (Potential).|Protein kinase.					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|ovary(7)|upper_aerodigestive_tract(3)|central_nervous_system(3)|skin(3)|large_intestine(2)|stomach(1)|pancreas(1)	28		all_cancers(76;7.47e-10)|Acute lymphoblastic leukemia(125;1.88e-09)|all_hematologic(75;1.75e-07)|all_epithelial(107;3.6e-05)|Lung NSC(302;0.0368)|all_lung(197;0.0509)|Colorectal(196;0.142)		BRCA - Breast invasive adenocarcinoma(108;0.0847)		GTCAAACTGCCCCATGATGCT	0.393													4	47					0	0	0.009096	0	0
EPHA7	2045	broad.mit.edu	37	6	93979305	93979305	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:93979305C>T	uc003poe.2	-	7	1764	c.1523G>A	c.(1522-1524)GGA>GAA	p.G508E	EPHA7_uc003pof.2_Missense_Mutation_p.G508E|EPHA7_uc011eac.1_Missense_Mutation_p.G508E	NM_004440	NP_004431	Q15375	EPHA7_HUMAN	ephrin receptor EphA7 precursor	508	Extracellular (Potential).|Fibronectin type-III 2.					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|ovary(7)|upper_aerodigestive_tract(3)|central_nervous_system(3)|skin(3)|large_intestine(2)|stomach(1)|pancreas(1)	28		all_cancers(76;7.47e-10)|Acute lymphoblastic leukemia(125;1.88e-09)|all_hematologic(75;1.75e-07)|all_epithelial(107;3.6e-05)|Lung NSC(302;0.0368)|all_lung(197;0.0509)|Colorectal(196;0.142)		BRCA - Breast invasive adenocarcinoma(108;0.0847)		ATACACTGTTCCTGGTTTCAG	0.393													24	44					0	0	0.003330	0	0
MANEA	79694	broad.mit.edu	37	6	96034425	96034425	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:96034425G>A	uc003poo.1	+	2	250	c.110G>A	c.(109-111)GGA>GAA	p.G37E	MANEA_uc003pon.2_Missense_Mutation_p.G37E	NM_024641	NP_078917	Q5SRI9	MANEA_HUMAN	mannosidase, endo-alpha	37	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	glycoprotein endo-alpha-1,2-mannosidase activity			ovary(2)|breast(1)	3		all_cancers(76;1.01e-06)|Acute lymphoblastic leukemia(125;3.58e-09)|all_hematologic(75;1.22e-06)|all_epithelial(107;0.00433)|Colorectal(196;0.0341)		BRCA - Breast invasive adenocarcinoma(108;0.148)		GCTACTTTTGGAGCTCCTTTT	0.358													23	35					0	0	0.003330	0	0
GPR63	81491	broad.mit.edu	37	6	97246843	97246843	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:97246843G>A	uc010kcl.2	-	3	1243	c.765C>T	c.(763-765)TTC>TTT	p.F255F	GPR63_uc003pou.2_Silent_p.F255F	NM_001143957	NP_001137429	Q9BZJ6	GPR63_HUMAN	G protein-coupled receptor 63	255	Helical; Name=5; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity|protein binding			upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(76;6.89e-05)|Acute lymphoblastic leukemia(125;7.02e-10)|all_hematologic(75;1.23e-06)|all_epithelial(107;0.0618)|Colorectal(196;0.0721)		BRCA - Breast invasive adenocarcinoma(108;0.0912)		GTATTACCAGGAAGGGTATGA	0.473													34	45					0	0	0.003755	0	0
KLHL32	114792	broad.mit.edu	37	6	97562253	97562253	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:97562253G>A	uc010kcm.1	+	7	1694	c.1222G>A	c.(1222-1224)GAA>AAA	p.E408K	KLHL32_uc003poy.2_Missense_Mutation_p.E408K|KLHL32_uc011ead.1_Missense_Mutation_p.E372K|KLHL32_uc003poz.2_Intron|KLHL32_uc011eae.1_Missense_Mutation_p.E339K|KLHL32_uc003ppa.2_Intron	NM_052904	NP_443136	Q96NJ5	KLH32_HUMAN	kelch-like 32	408	Kelch 3.									ovary(3)|skin(1)	4		all_cancers(76;1.19e-06)|Acute lymphoblastic leukemia(125;5.83e-10)|all_hematologic(75;3.67e-07)|all_epithelial(107;0.00778)|Colorectal(196;0.122)		BRCA - Breast invasive adenocarcinoma(108;0.0558)		GGGCAGAAATGAACTGCGCCA	0.498													5	46					0	0	0.001168	0	0
KLHL32	114792	broad.mit.edu	37	6	97562297	97562297	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:97562297G>A	uc010kcm.1	+	7	1738	c.1266G>A	c.(1264-1266)AAG>AAA	p.K422K	KLHL32_uc003poy.2_Silent_p.K422K|KLHL32_uc011ead.1_Silent_p.K386K|KLHL32_uc003poz.2_Intron|KLHL32_uc011eae.1_Silent_p.K353K|KLHL32_uc003ppa.2_Intron	NM_052904	NP_443136	Q96NJ5	KLH32_HUMAN	kelch-like 32	422	Kelch 3.									ovary(3)|skin(1)	4		all_cancers(76;1.19e-06)|Acute lymphoblastic leukemia(125;5.83e-10)|all_hematologic(75;3.67e-07)|all_epithelial(107;0.00778)|Colorectal(196;0.122)		BRCA - Breast invasive adenocarcinoma(108;0.0558)		ATTGCCCCAAGAAGAACAAAT	0.473													11	48					0	0	0.010729	0	0
SIM1	6492	broad.mit.edu	37	6	100897528	100897528	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:100897528G>A	uc003pqj.3	-	4	603	c.396C>T	c.(394-396)GAC>GAT	p.D132D	SIM1_uc010kcu.2_Silent_p.D132D	NM_005068	NP_005059	P81133	SIM1_HUMAN	single-minded homolog 1	132	PAS 1.				cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			ovary(4)	4		all_cancers(76;9.88e-06)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.0248)|Colorectal(196;0.13)		BRCA - Breast invasive adenocarcinoma(108;0.0774)		TCTCGTCGTGGTCTGCCGGGT	0.592													15	51					0	0	0.004007	0	0
GRIK2	2898	broad.mit.edu	37	6	102124583	102124583	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:102124583G>A	uc003pqp.3	+	4	876	c.627G>A	c.(625-627)AAG>AAA	p.K209K	GRIK2_uc003pqn.2_Silent_p.K209K|GRIK2_uc003pqo.3_Silent_p.K209K|GRIK2_uc010kcw.2_Silent_p.K209K	NM_021956	NP_068775	Q13002	GRIK2_HUMAN	glutamate receptor, ionotropic, kainate 2	209	Extracellular (Potential).				glutamate signaling pathway|induction of programmed cell death in response to chemical stimulus|neuron apoptosis|positive regulation of synaptic transmission|regulation of short-term neuronal synaptic plasticity	cell junction|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			ovary(2)|pancreas(1)|breast(1)|skin(1)	5		all_cancers(76;1.19e-07)|Acute lymphoblastic leukemia(125;6.17e-11)|all_hematologic(75;6.01e-08)|all_epithelial(87;0.0121)|Colorectal(196;0.14)		all cancers(137;0.112)|BRCA - Breast invasive adenocarcinoma(108;0.124)|GBM - Glioblastoma multiforme(226;0.206)	L-Glutamic Acid(DB00142)	CTGATACAAAGGATGCAAAAC	0.368													9	22					0	0	0.004482	0	0
GRIK2	2898	broad.mit.edu	37	6	102250215	102250215	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:102250215G>A	uc003pqp.3	+	8	1354	c.1105G>A	c.(1105-1107)GAA>AAA	p.E369K	GRIK2_uc003pqn.2_Missense_Mutation_p.E369K|GRIK2_uc003pqo.3_Missense_Mutation_p.E369K|GRIK2_uc010kcw.2_Missense_Mutation_p.E369K	NM_021956	NP_068775	Q13002	GRIK2_HUMAN	glutamate receptor, ionotropic, kainate 2	369	Extracellular (Potential).				glutamate signaling pathway|induction of programmed cell death in response to chemical stimulus|neuron apoptosis|positive regulation of synaptic transmission|regulation of short-term neuronal synaptic plasticity	cell junction|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			ovary(2)|pancreas(1)|breast(1)|skin(1)	5		all_cancers(76;1.19e-07)|Acute lymphoblastic leukemia(125;6.17e-11)|all_hematologic(75;6.01e-08)|all_epithelial(87;0.0121)|Colorectal(196;0.14)		all cancers(137;0.112)|BRCA - Breast invasive adenocarcinoma(108;0.124)|GBM - Glioblastoma multiforme(226;0.206)	L-Glutamic Acid(DB00142)	GGCACATTGGGAAGGCCTCAC	0.338													12	25					0	0	0.013537	0	0
GRIK2	2898	broad.mit.edu	37	6	102307279	102307279	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:102307279G>A	uc003pqp.3	+	10	1684	c.1435G>A	c.(1435-1437)GAA>AAA	p.E479K	GRIK2_uc003pqn.2_Missense_Mutation_p.E479K|GRIK2_uc003pqo.3_Missense_Mutation_p.E479K|GRIK2_uc010kcw.2_Missense_Mutation_p.E479K	NM_021956	NP_068775	Q13002	GRIK2_HUMAN	glutamate receptor, ionotropic, kainate 2	479	Extracellular (Potential).				glutamate signaling pathway|induction of programmed cell death in response to chemical stimulus|neuron apoptosis|positive regulation of synaptic transmission|regulation of short-term neuronal synaptic plasticity	cell junction|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			ovary(2)|pancreas(1)|breast(1)|skin(1)	5		all_cancers(76;1.19e-07)|Acute lymphoblastic leukemia(125;6.17e-11)|all_hematologic(75;6.01e-08)|all_epithelial(87;0.0121)|Colorectal(196;0.14)		all cancers(137;0.112)|BRCA - Breast invasive adenocarcinoma(108;0.124)|GBM - Glioblastoma multiforme(226;0.206)	L-Glutamic Acid(DB00142)	CTTTACATATGAAATTAGACT	0.388													12	30					0	0	0.013537	0	0
GRIK2	2898	broad.mit.edu	37	6	102483362	102483362	+	Missense_Mutation	SNP	T	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:102483362T>G	uc003pqp.3	+	14	2481	c.2232T>G	c.(2230-2232)TTT>TTG	p.F744L	GRIK2_uc003pqo.3_Missense_Mutation_p.F744L|GRIK2_uc010kcw.2_Missense_Mutation_p.F744L	NM_021956	NP_068775	Q13002	GRIK2_HUMAN	glutamate receptor, ionotropic, kainate 2	744	Extracellular (Potential).				glutamate signaling pathway|induction of programmed cell death in response to chemical stimulus|neuron apoptosis|positive regulation of synaptic transmission|regulation of short-term neuronal synaptic plasticity	cell junction|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			ovary(2)|pancreas(1)|breast(1)|skin(1)	5		all_cancers(76;1.19e-07)|Acute lymphoblastic leukemia(125;6.17e-11)|all_hematologic(75;6.01e-08)|all_epithelial(87;0.0121)|Colorectal(196;0.14)		all cancers(137;0.112)|BRCA - Breast invasive adenocarcinoma(108;0.124)|GBM - Glioblastoma multiforme(226;0.206)	L-Glutamic Acid(DB00142)	CCATCGAGTTTGTTACCCAGC	0.473													48	153					0	0	0.014410	0	0
LIN28B	389421	broad.mit.edu	37	6	105406086	105406086	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:105406086G>A	uc003pqv.1	+	2	326	c.123G>A	c.(121-123)ATG>ATA	p.M41I	LIN28B_uc010kda.1_Missense_Mutation_p.M1I	NM_001004317	NP_001004317	Q6ZN17	LN28B_HUMAN	lin-28 homolog B	41	CSD.				miRNA catabolic process|pre-miRNA processing|regulation of transcription, DNA-dependent|RNA 3'-end processing	cytoplasm|nucleus	DNA binding|protein binding|RNA binding|zinc ion binding				0		all_cancers(87;0.00346)|Acute lymphoblastic leukemia(125;2.26e-08)|all_hematologic(75;2.79e-06)|all_epithelial(87;0.204)				ATGTGCGCATGGGATTTGGAT	0.522													44	71					0	0	0.009718	0	0
LIN28B	389421	broad.mit.edu	37	6	105474336	105474336	+	Missense_Mutation	SNP	A	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:105474336A>T	uc003pqv.1	+	3	565	c.362A>T	c.(361-363)AAA>ATA	p.K121I	LIN28B_uc010kda.1_Missense_Mutation_p.K81I	NM_001004317	NP_001004317	Q6ZN17	LN28B_HUMAN	lin-28 homolog B	121					miRNA catabolic process|pre-miRNA processing|regulation of transcription, DNA-dependent|RNA 3'-end processing	cytoplasm|nucleus	DNA binding|protein binding|RNA binding|zinc ion binding				0		all_cancers(87;0.00346)|Acute lymphoblastic leukemia(125;2.26e-08)|all_hematologic(75;2.79e-06)|all_epithelial(87;0.204)				ACACTACAGAAAAGAAAACCA	0.373													27	53					0	0	0.005443	0	0
LIN28B	389421	broad.mit.edu	37	6	105526491	105526491	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:105526491G>A	uc003pqv.1	+	4	789	c.586G>A	c.(586-588)GGA>AGA	p.G196R	LIN28B_uc010kda.1_3'UTR	NM_001004317	NP_001004317	Q6ZN17	LN28B_HUMAN	lin-28 homolog B	196					miRNA catabolic process|pre-miRNA processing|regulation of transcription, DNA-dependent|RNA 3'-end processing	cytoplasm|nucleus	DNA binding|protein binding|RNA binding|zinc ion binding				0		all_cancers(87;0.00346)|Acute lymphoblastic leukemia(125;2.26e-08)|all_hematologic(75;2.79e-06)|all_epithelial(87;0.204)				TCGAGAAGTGGGAGGCGGGCA	0.552													14	23					0	0	0.002450	0	0
POPDC3	64208	broad.mit.edu	37	6	105606500	105606500	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:105606500C>T	uc003prb.2	-	4	1123	c.721G>A	c.(721-723)GAT>AAT	p.D241N	uc003pqz.2_Intron|POPDC3_uc003pra.2_RNA	NM_022361	NP_071756	Q9HBV1	POPD3_HUMAN	popeye protein 3	241						integral to membrane				skin(3)|ovary(2)	5		all_cancers(87;4.87e-05)|Acute lymphoblastic leukemia(125;1.9e-08)|all_hematologic(75;9.25e-07)|all_epithelial(87;0.0157)|Colorectal(196;0.202)|Lung NSC(302;0.238)				TAGAGTTTATCTGCAATGTCA	0.393													43	89					0	0	0.013114	0	0
POPDC3	64208	broad.mit.edu	37	6	105606598	105606598	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:105606598C>T	uc003prb.2	-	4	1025	c.623G>A	c.(622-624)CGA>CAA	p.R208Q	uc003pqz.2_Intron|POPDC3_uc003pra.2_RNA	NM_022361	NP_071756	Q9HBV1	POPD3_HUMAN	popeye protein 3	208						integral to membrane				skin(3)|ovary(2)	5		all_cancers(87;4.87e-05)|Acute lymphoblastic leukemia(125;1.9e-08)|all_hematologic(75;9.25e-07)|all_epithelial(87;0.0157)|Colorectal(196;0.202)|Lung NSC(302;0.238)				AGACACATATCGACAATCAGT	0.413													20	172					0	0	0.008871	0	0
PREP	5550	broad.mit.edu	37	6	105726130	105726130	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:105726130C>T	uc003prc.2	-	15	2225	c.2022G>A	c.(2020-2022)GTG>GTA	p.V674V		NM_002726	NP_002717	P48147	PPCE_HUMAN	prolyl endopeptidase	674					proteolysis		serine-type endopeptidase activity			ovary(3)	3		all_cancers(87;0.000128)|Acute lymphoblastic leukemia(125;1.9e-08)|all_hematologic(75;9.25e-07)|all_epithelial(87;0.0344)|Lung NSC(302;0.191)|Colorectal(196;0.202)			Oxytocin(DB00107)	CCTTGGTGTCCACGTGGATAA	0.597													17	36					0	0	0.004007	0	0
BEND3	57673	broad.mit.edu	37	6	107390735	107390735	+	Silent	SNP	G	A	A	rs146650207		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:107390735G>A	uc003prs.2	-	5	2310	c.1660C>T	c.(1660-1662)CTG>TTG	p.L554L		NM_001080450	NP_001073919	Q5T5X7	BEND3_HUMAN	BEN domain containing 3	554	BEN 3.									ovary(3)	3						TTGCTGAGCAGGCAGTCGGCA	0.637													18	32					0	0	0.006122	0	0
FOXO3	2309	broad.mit.edu	37	6	108984918	108984918	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:108984918C>T	uc003psk.2	+	3	1198	c.882C>T	c.(880-882)AGC>AGT	p.S294S	FOXO3_uc003psn.2_Intron|FOXO3_uc003psm.2_Silent_p.S294S|FOXO3_uc011ean.1_Silent_p.S74S|FOXO3_uc010kdj.1_Silent_p.S74S	NM_201559	NP_963853	O43524	FOXO3_HUMAN	forkhead box O3A	294				PGSPTSRSSDELDAWTDFRSRTNSNASTVSGRLSPIMAS -> AWQPHVNAAVMSWMRGRTSVHAPILTPAQSVAACRPSW QV (in Ref. 5; CAA04860).	antral ovarian follicle growth|apoptosis|embryo development|glucose homeostasis|induction of apoptosis|initiation of primordial ovarian follicle growth|insulin receptor signaling pathway|negative regulation of transcription from RNA polymerase II promoter|nerve growth factor receptor signaling pathway|oocyte maturation|ovulation from ovarian follicle|pattern specification process|phosphatidylinositol-mediated signaling|positive regulation of erythrocyte differentiation|positive regulation of transcription from RNA polymerase II promoter|regulation of cell proliferation|regulation of sequence-specific DNA binding transcription factor activity|tissue development	cytosol|transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|protein kinase binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription factor binding			central_nervous_system(4)|lung(2)	6		all_cancers(87;1.78e-07)|Acute lymphoblastic leukemia(125;2.66e-08)|all_hematologic(75;1.13e-06)|all_epithelial(87;3.88e-05)|Colorectal(196;0.0294)|all_lung(197;0.0487)|Lung SC(18;0.152)		Epithelial(106;0.000759)|all cancers(137;0.00121)|BRCA - Breast invasive adenocarcinoma(108;0.00163)|OV - Ovarian serous cystadenocarcinoma(136;0.00718)		GGCCTGGCAGCCCCACGTCAC	0.637													4	20					0	0	0.000602	0	0
SESN1	27244	broad.mit.edu	37	6	109319812	109319812	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:109319812G>A	uc003pst.3	-	5	791	c.699C>T	c.(697-699)TTC>TTT	p.F233F	SESN1_uc003psu.2_Silent_p.F292F	NM_014454	NP_055269	Q9Y6P5	SESN1_HUMAN	sestrin 1	233					cell cycle arrest|negative regulation of cell proliferation|response to DNA damage stimulus	nucleus				ovary(1)	1		all_cancers(87;6.45e-05)|Acute lymphoblastic leukemia(125;3.55e-10)|all_hematologic(75;1.68e-07)|all_epithelial(87;0.0106)|Colorectal(196;0.0637)		Epithelial(106;0.0014)|BRCA - Breast invasive adenocarcinoma(108;0.00146)|all cancers(137;0.0031)|OV - Ovarian serous cystadenocarcinoma(136;0.0117)		AAGGAGGTCTGAATGTGTGGC	0.428													35	78					0	0	0.004289	0	0
MICAL1	64780	broad.mit.edu	37	6	109769147	109769148	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:109769147_109769148GG>AA	uc003ptj.2	-	13	2128_2129	c.1874_1875CC>TT	c.(1873-1875)TCC>TTT	p.S625F	MICAL1_uc003ptk.2_Missense_Mutation_p.S625F|MICAL1_uc010kdr.2_Missense_Mutation_p.S539F|MICAL1_uc011eaq.1_Missense_Mutation_p.S644F	NM_022765	NP_073602	Q8TDZ2	MICA1_HUMAN	microtubule associated monoxygenase, calponin	625					cytoskeleton organization|signal transduction	cytoplasm|intermediate filament	SH3 domain binding|zinc ion binding			breast(2)|ovary(1)	3		all_cancers(87;0.000189)|Acute lymphoblastic leukemia(125;3.07e-08)|all_hematologic(75;3.33e-06)|all_epithelial(87;0.00686)|Lung SC(18;0.0743)|Colorectal(196;0.101)|all_lung(197;0.149)		Epithelial(106;0.0142)|all cancers(137;0.0197)|OV - Ovarian serous cystadenocarcinoma(136;0.0233)|BRCA - Breast invasive adenocarcinoma(108;0.0574)		AGGTCCCTGGGGAGGCCTGGCT	0.594													10	38					0	0	0.004672	0	0
AKD1	221264	broad.mit.edu	37	6	109867287	109867287	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:109867287C>T	uc003ptn.2	-	26	3085	c.3008G>A	c.(3007-3009)GGC>GAC	p.G1003D	AKD1_uc011eat.1_Missense_Mutation_p.G82D	NM_001145128	NP_001138600	Q5TCS8	AKD1_HUMAN	adenylate kinase domain containing 1 isoform 1	1003					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|nucleoside-triphosphatase activity			ovary(1)	1						CATAGTTTTGCCAGAGCCCTG	0.448													18	116					0	0	0.010504	0	0
AKD1	221264	broad.mit.edu	37	6	109996915	109996915	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:109996915A>G	uc003ptn.2	-	2	111	c.34T>C	c.(34-36)TTT>CTT	p.F12L	AKD1_uc003ptr.3_Missense_Mutation_p.F12L|AKD1_uc003pts.1_RNA	NM_001145128	NP_001138600	Q5TCS8	AKD1_HUMAN	adenylate kinase domain containing 1 isoform 1	12					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|nucleoside-triphosphatase activity			ovary(1)	1						ATATCTGCAAAAGGATACTCT	0.328													8	45					0	0	0.003080	0	0
CDC40	51362	broad.mit.edu	37	6	110533353	110533353	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:110533353T>C	uc003pua.2	+	7	769	c.745T>C	c.(745-747)TAT>CAT	p.Y249H		NM_015891	NP_056975	O60508	PRP17_HUMAN	cell division cycle 40 homolog	249					mRNA 3'-end processing|mRNA export from nucleus|termination of RNA polymerase II transcription	catalytic step 2 spliceosome|nucleoplasm					0		all_cancers(87;6.23e-06)|Acute lymphoblastic leukemia(125;2.66e-08)|all_hematologic(75;1.13e-06)|all_epithelial(87;0.00159)|Colorectal(196;0.0488)		Epithelial(106;0.0221)|all cancers(137;0.0314)|OV - Ovarian serous cystadenocarcinoma(136;0.034)		AATGTATGACTATCAAGGCAG	0.328													16	38					0	0	0.004990	0	0
DDO	8528	broad.mit.edu	37	6	110714003	110714003	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:110714003G>A	uc003puc.2	-	5	1089	c.1085C>T	c.(1084-1086)ACC>ATC	p.T362I	C6orf186_uc003pub.2_Intron|DDO_uc003pud.2_Missense_Mutation_p.T303I	NM_003649	NP_003640	Q99489	OXDD_HUMAN	D-aspartate oxidase isoform a	334					aspartate catabolic process	peroxisome	binding|D-amino-acid oxidase activity|D-aspartate oxidase activity			ovary(2)|breast(1)	3		all_cancers(87;3.47e-21)|all_epithelial(87;9.03e-20)|Acute lymphoblastic leukemia(125;2.13e-07)|all_hematologic(75;5.28e-06)|all_lung(197;2.98e-05)|Lung NSC(302;3.25e-05)|Colorectal(196;3.46e-05)|Ovarian(999;0.00327)		all cancers(137;2.54e-48)|Epithelial(106;3.11e-44)|OV - Ovarian serous cystadenocarcinoma(136;2.08e-24)|BRCA - Breast invasive adenocarcinoma(108;0.000141)|GBM - Glioblastoma multiforme(226;0.00046)		GGGAATGGGGGTCCTGAGGGC	0.532													9	25					0	0	0.008291	0	0
DDO	8528	broad.mit.edu	37	6	110736674	110736674	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:110736674C>T	uc003puc.2	-	1	80	c.76G>A	c.(76-78)GAC>AAC	p.D26N	DDO_uc003pud.2_Missense_Mutation_p.D26N	NM_003649	NP_003640	Q99489	OXDD_HUMAN	D-aspartate oxidase isoform a	Error:Variant_position_missing_in_Q99489_after_alignment					aspartate catabolic process	peroxisome	binding|D-amino-acid oxidase activity|D-aspartate oxidase activity			ovary(2)|breast(1)	3		all_cancers(87;3.47e-21)|all_epithelial(87;9.03e-20)|Acute lymphoblastic leukemia(125;2.13e-07)|all_hematologic(75;5.28e-06)|all_lung(197;2.98e-05)|Lung NSC(302;3.25e-05)|Colorectal(196;3.46e-05)|Ovarian(999;0.00327)		all cancers(137;2.54e-48)|Epithelial(106;3.11e-44)|OV - Ovarian serous cystadenocarcinoma(136;2.08e-24)|BRCA - Breast invasive adenocarcinoma(108;0.000141)|GBM - Glioblastoma multiforme(226;0.00046)		AAGTACCTGTCTCTGAAAAAG	0.517													4	43					0	0	0.009096	0	0
SLC16A10	117247	broad.mit.edu	37	6	111498712	111498712	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:111498712G>A	uc003pus.2	+	3	961	c.786G>A	c.(784-786)GAG>GAA	p.E262E	SLC16A10_uc003pur.3_Silent_p.E262E|SLC16A10_uc003put.2_5'UTR	NM_018593	NP_061063	Q8TF71	MOT10_HUMAN	solute carrier family 16, member 10	262	Extracellular (Potential).				aromatic amino acid transport|cellular nitrogen compound metabolic process|ion transport	basolateral plasma membrane|integral to membrane	amino acid transmembrane transporter activity				0		all_cancers(87;0.00172)|Acute lymphoblastic leukemia(125;2.27e-07)|all_hematologic(75;1.38e-05)|all_epithelial(87;0.0313)|Colorectal(196;0.0466)		OV - Ovarian serous cystadenocarcinoma(136;0.0703)|Epithelial(106;0.12)|all cancers(137;0.132)		AAGATAAAGAGAGTGGAGGTA	0.433													4	34					0	0	0.009096	0	0
FYN	2534	broad.mit.edu	37	6	112025283	112025283	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:112025283G>A	uc003pvj.2	-	6	806	c.466C>T	c.(466-468)CGA>TGA	p.R156*	FYN_uc003pvi.2_Nonsense_Mutation_p.R156*|FYN_uc003pvk.2_Nonsense_Mutation_p.R156*|FYN_uc003pvh.2_Nonsense_Mutation_p.R156*|FYN_uc010kdy.1_5'Flank	NM_002037	NP_002028	P06241	FYN_HUMAN	protein-tyrosine kinase fyn isoform a	156	SH2.				axon guidance|calcium ion transport|feeding behavior|interspecies interaction between organisms|intracellular protein kinase cascade|learning|leukocyte migration|platelet activation|regulation of defense response to virus by virus|T cell costimulation|T cell receptor signaling pathway|viral reproduction	cytosol|endosome|plasma membrane	ATP binding|glycoprotein binding|identical protein binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity			lung(5)|central_nervous_system(1)|skin(1)	7		all_cancers(87;1.37e-05)|Acute lymphoblastic leukemia(125;2.15e-07)|all_hematologic(75;5.28e-06)|all_epithelial(87;0.00125)|Colorectal(196;0.0211)		all cancers(137;0.0451)|OV - Ovarian serous cystadenocarcinoma(136;0.0476)|Epithelial(106;0.102)	Dasatinib(DB01254)	GCATCTTTTCGGCCAAGTTTT	0.383													18	47					0	0	0.008871	0	0
LAMA4	3910	broad.mit.edu	37	6	112496546	112496546	+	Silent	SNP	G	A	A	rs3752580		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:112496546G>A	uc003pvu.2	-	11	1635	c.1326C>T	c.(1324-1326)CTC>CTT	p.L442L	LAMA4_uc003pvv.2_Silent_p.L435L|LAMA4_uc003pvt.2_Silent_p.L435L	NM_001105206	NP_001098676	Q16363	LAMA4_HUMAN	laminin, alpha 4 isoform 1 precursor	442	Domain II and I.				cell adhesion|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	extracellular matrix structural constituent|receptor binding			ovary(4)|breast(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	9		all_cancers(87;0.000196)|all_hematologic(75;0.000114)|all_epithelial(87;0.00542)|Colorectal(196;0.0209)		all cancers(137;0.0335)|OV - Ovarian serous cystadenocarcinoma(136;0.0578)|Epithelial(106;0.0748)|BRCA - Breast invasive adenocarcinoma(108;0.242)		CCTCATCCACGAGCTCCCGTT	0.493													30	70					0	0	0.009535	0	0
FRK	2444	broad.mit.edu	37	6	116288831	116288831	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:116288831C>T	uc003pwi.1	-	4	1129	c.682G>A	c.(682-684)GAG>AAG	p.E228K		NM_002031	NP_002022	P42685	FRK_HUMAN	fyn-related kinase	228					negative regulation of cell proliferation	cytoplasm|nucleus	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding			ovary(3)|lung(3)	6		all_cancers(87;0.00559)|all_epithelial(87;0.00738)|Colorectal(196;0.0465)		all cancers(137;0.0128)|OV - Ovarian serous cystadenocarcinoma(136;0.0209)|GBM - Glioblastoma multiforme(226;0.0459)|Epithelial(106;0.0625)		CGGTCTATCTCCCATTGGTCC	0.418													5	38					0	0	0.000602	0	0
GPRC6A	222545	broad.mit.edu	37	6	117113328	117113328	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:117113328G>A	uc003pxj.1	-	6	2780	c.2758C>T	c.(2758-2760)CGA>TGA	p.R920*	GPRC6A_uc003pxk.1_Nonsense_Mutation_p.R745*|GPRC6A_uc003pxl.1_Nonsense_Mutation_p.R849*	NM_148963	NP_683766	Q5T6X5	GPC6A_HUMAN	G protein-coupled receptor, family C, group 6,	920	Cytoplasmic (Potential).				response to amino acid stimulus		G-protein coupled receptor activity			ovary(4)|skin(2)	6		all_cancers(87;0.0314)|all_epithelial(87;0.0216)|Colorectal(196;0.234)		GBM - Glioblastoma multiforme(226;0.0265)|all cancers(137;0.0554)|OV - Ovarian serous cystadenocarcinoma(136;0.07)		ATTCTTTTTCGAGGCAAAGTT	0.388													27	109					0	0	0.009535	0	0
RFX6	222546	broad.mit.edu	37	6	117198604	117198604	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:117198604G>A	uc003pxm.2	+	1	229	c.166G>A	c.(166-168)GAG>AAG	p.E56K		NM_173560	NP_775831	Q8HWS3	RFX6_HUMAN	regulatory factor X, 6	56					glucose homeostasis|pancreatic A cell differentiation|pancreatic D cell differentiation|pancreatic E cell differentiation|positive regulation of transcription, DNA-dependent|regulation of insulin secretion|transcription, DNA-dependent|type B pancreatic cell differentiation	nucleus	protein binding|transcription regulatory region DNA binding			ovary(1)|pancreas(1)|skin(1)	3						GCCCGGGGGCGAGCAGGGCGG	0.667													4	4					0	0	0.009096	0	0
RFX6	222546	broad.mit.edu	37	6	117237412	117237412	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:117237412C>T	uc003pxm.2	+	9	970	c.907C>T	c.(907-909)CTT>TTT	p.L303F		NM_173560	NP_775831	Q8HWS3	RFX6_HUMAN	regulatory factor X, 6	303					glucose homeostasis|pancreatic A cell differentiation|pancreatic D cell differentiation|pancreatic E cell differentiation|positive regulation of transcription, DNA-dependent|regulation of insulin secretion|transcription, DNA-dependent|type B pancreatic cell differentiation	nucleus	protein binding|transcription regulatory region DNA binding			ovary(1)|pancreas(1)|skin(1)	3						TGACCATCTCCTTCCCCTGCT	0.348													27	89					0	0	0.009535	0	0
ROS1	6098	broad.mit.edu	37	6	117662585	117662585	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:117662585C>T	uc003pxp.1	-	29	5079	c.4880G>A	c.(4879-4881)GGT>GAT	p.G1627D	ROS1_uc011ebi.1_Intron|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935	P08922	ROS_HUMAN	proto-oncogene c-ros-1 protein precursor	1627	Fibronectin type-III 7.|Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	membrane fraction|sodium:potassium-exchanging ATPase complex	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(8)|ovary(6)|central_nervous_system(3)|skin(3)|stomach(2)|breast(2)|large_intestine(1)	25		all_cancers(87;0.00846)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0387)|OV - Ovarian serous cystadenocarcinoma(136;0.0954)|all cancers(137;0.137)		AATATTTCCACCAGACAGTCT	0.398			T	GOPC|ROS1	glioblastoma|NSCLC								10	52					0	0	0.006214	0	0
ROS1	6098	broad.mit.edu	37	6	117708143	117708143	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:117708143G>A	uc003pxp.1	-	14	2233	c.2034C>T	c.(2032-2034)ATC>ATT	p.I678I	ROS1_uc011ebi.1_RNA|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935	P08922	ROS_HUMAN	proto-oncogene c-ros-1 protein precursor	678	Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	membrane fraction|sodium:potassium-exchanging ATPase complex	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(8)|ovary(6)|central_nervous_system(3)|skin(3)|stomach(2)|breast(2)|large_intestine(1)	25		all_cancers(87;0.00846)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0387)|OV - Ovarian serous cystadenocarcinoma(136;0.0954)|all cancers(137;0.137)		TCACAGCCATGATAAATGGTG	0.363			T	GOPC|ROS1	glioblastoma|NSCLC								6	57					0	0	0.001168	0	0
GOPC	57120	broad.mit.edu	37	6	117900091	117900091	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:117900091G>A	uc003pxu.2	-	2	652	c.422C>T	c.(421-423)GCT>GTT	p.A141V	GOPC_uc003pxv.2_Missense_Mutation_p.A141V|GOPC_uc010keg.1_5'Flank	NM_020399	NP_065132	Q9HD26	GOPC_HUMAN	golgi associated PDZ and coiled-coil motif	141	Potential.				apical protein localization|cytoplasmic sequestering of CFTR protein|ER to Golgi vesicle-mediated transport|Golgi to plasma membrane transport|protein homooligomerization|protein transport	cell junction|dendrite|Golgi membrane|postsynaptic density|postsynaptic membrane|trans-Golgi network transport vesicle	cystic fibrosis transmembrane conductance regulator binding			ovary(1)	1		all_cancers(87;0.00844)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0363)|OV - Ovarian serous cystadenocarcinoma(136;0.0821)|all cancers(137;0.0976)		ACCAGAGTCAGCACTTTGACC	0.408			O	ROS1	glioblastoma								10	34					0	0	0.013537	0	0
C6orf204	387119	broad.mit.edu	37	6	118791736	118791736	+	Silent	SNP	T	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:118791736T>C	uc003pxz.1	-	11	2574	c.1986A>G	c.(1984-1986)GAA>GAG	p.E662E		NM_001042475	NP_001035940	Q5SZL2	CF204_HUMAN	chromosome 6 open reading frame 204 isoform a	662	Potential.					centrosome				breast(1)	1		all_cancers(87;0.0814)|all_epithelial(87;0.115)		GBM - Glioblastoma multiforme(226;0.0114)|all cancers(137;0.035)|OV - Ovarian serous cystadenocarcinoma(136;0.0618)		GTACATTTCTTTCTTTCTTTT	0.303													11	72					0	0	0.002450	0	0
FAM184A	79632	broad.mit.edu	37	6	119332557	119332557	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:119332557C>T	uc003pyj.2	-	6	1918	c.1570G>A	c.(1570-1572)GAA>AAA	p.E524K	FAM184A_uc003pyk.3_Missense_Mutation_p.E404K|FAM184A_uc003pyl.3_Missense_Mutation_p.E404K	NM_024581	NP_078857	Q8NB25	F184A_HUMAN	hypothetical protein LOC79632 isoform 1	524	Potential.									ovary(2)|central_nervous_system(2)|skin(2)|pancreas(1)	7						TTATCCTCTTCCAGGTTTAGT	0.303													7	25					0	0	0.001984	0	0
GJA1	2697	broad.mit.edu	37	6	121768626	121768626	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:121768626C>T	uc003pyr.2	+	2	883	c.633C>T	c.(631-633)ATC>ATT	p.I211I	GJA1_uc011ebo.1_Silent_p.I112I|GJA1_uc011ebp.1_5'UTR	NM_000165	NP_000156	P17302	CXA1_HUMAN	connexin 43	211	Helical; (Potential).				cell-cell signaling|cellular membrane organization|gap junction assembly|heart development|muscle contraction|positive regulation of I-kappaB kinase/NF-kappaB cascade	connexon complex|Golgi-associated vesicle membrane|integral to plasma membrane|membrane raft	ion transmembrane transporter activity|signal transducer activity			ovary(2)	2				GBM - Glioblastoma multiforme(226;0.00252)	Carvedilol(DB01136)	TCTTCATCATCTTCATGCTGG	0.483													48	81					0	0	0.014410	0	0
C6orf58	352999	broad.mit.edu	37	6	127898343	127898343	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:127898343C>T	uc003qbh.2	+	1	25	c.13C>T	c.(13-15)CCT>TCT	p.P5S		NM_001010905	NP_001010905	Q6P5S2	CF058_HUMAN	hypothetical protein LOC352999 precursor	5						extracellular region					0				GBM - Glioblastoma multiforme(226;0.0405)|all cancers(137;0.156)		GGCTTTTCTTCCTTCCTGGGT	0.488													6	42					0	0	0.001168	0	0
PTPRK	5796	broad.mit.edu	37	6	128294298	128294298	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:128294298C>T	uc003qbk.2	-	29	4502	c.4135G>A	c.(4135-4137)GGT>AGT	p.G1379S	PTPRK_uc003qbj.2_Missense_Mutation_p.G1380S|PTPRK_uc010kfc.2_Missense_Mutation_p.G1386S|PTPRK_uc011ebu.1_Missense_Mutation_p.G1402S	NM_002844	NP_002835	Q15262	PTPRK_HUMAN	protein tyrosine phosphatase, receptor type, K	1379	Tyrosine-protein phosphatase 2.|Cytoplasmic (Potential).				cell migration|cellular response to reactive oxygen species|cellular response to UV|focal adhesion assembly|negative regulation of cell cycle|negative regulation of cell migration|negative regulation of keratinocyte proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transforming growth factor beta receptor signaling pathway	adherens junction|cell surface|cell-cell junction|integral to plasma membrane|leading edge membrane	beta-catenin binding|gamma-catenin binding|protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|skin(2)|pancreas(1)|kidney(1)|central_nervous_system(1)	8				all cancers(137;0.0118)|GBM - Glioblastoma multiforme(226;0.0372)|OV - Ovarian serous cystadenocarcinoma(136;0.24)		CGCCCGCCACCATTTCTGAAA	0.423													24	38					0	0	0.011902	0	0
PTPRK	5796	broad.mit.edu	37	6	128312003	128312003	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:128312003C>T	uc003qbk.2	-	21	3371	c.3004G>A	c.(3004-3006)GAT>AAT	p.D1002N	PTPRK_uc003qbj.2_Missense_Mutation_p.D1003N|PTPRK_uc010kfc.2_Missense_Mutation_p.D1009N|PTPRK_uc011ebu.1_Missense_Mutation_p.D1025N	NM_002844	NP_002835	Q15262	PTPRK_HUMAN	protein tyrosine phosphatase, receptor type, K	1002	Tyrosine-protein phosphatase 1.|Cytoplasmic (Potential).				cell migration|cellular response to reactive oxygen species|cellular response to UV|focal adhesion assembly|negative regulation of cell cycle|negative regulation of cell migration|negative regulation of keratinocyte proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transforming growth factor beta receptor signaling pathway	adherens junction|cell surface|cell-cell junction|integral to plasma membrane|leading edge membrane	beta-catenin binding|gamma-catenin binding|protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|skin(2)|pancreas(1)|kidney(1)|central_nervous_system(1)	8				all cancers(137;0.0118)|GBM - Glioblastoma multiforme(226;0.0372)|OV - Ovarian serous cystadenocarcinoma(136;0.24)		ACTTCAGTATCATCAGGCCAA	0.348													6	80					0	0	0.003080	0	0
LAMA2	3908	broad.mit.edu	37	6	129663546	129663546	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:129663546G>A	uc003qbn.2	+	30	4475	c.4370G>A	c.(4369-4371)GGA>GAA	p.G1457E	LAMA2_uc003qbo.2_Missense_Mutation_p.G1457E	NM_000426	NP_000417	P24043	LAMA2_HUMAN	laminin alpha 2 subunit isoform a precursor	1457	Laminin EGF-like 15.				cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|breast(1)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		GGATACTATGGAATTGTCAAG	0.388													30	56					0	0	0.012213	0	0
LAMA2	3908	broad.mit.edu	37	6	129722412	129722412	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:129722412A>G	uc003qbn.2	+	38	5594	c.5489A>G	c.(5488-5490)AAC>AGC	p.N1830S	LAMA2_uc003qbo.2_Missense_Mutation_p.N1830S	NM_000426	NP_000417	P24043	LAMA2_HUMAN	laminin alpha 2 subunit isoform a precursor	1830	Domain II and I.|Potential.				cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|breast(1)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		CAAATTGAGAACACTTTAAAA	0.388													14	55					0	0	0.004656	0	0
EPB41L2	2037	broad.mit.edu	37	6	131247777	131247777	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:131247777C>T	uc003qch.2	-	4	960	c.778G>A	c.(778-780)GGA>AGA	p.G260R	EPB41L2_uc003qcg.1_Missense_Mutation_p.G260R|EPB41L2_uc011eby.1_Missense_Mutation_p.G260R|EPB41L2_uc003qci.2_Missense_Mutation_p.G260R|EPB41L2_uc010kfk.2_Missense_Mutation_p.G260R|EPB41L2_uc010kfl.1_Missense_Mutation_p.G260R	NM_001431	NP_001422	O43491	E41L2_HUMAN	erythrocyte membrane protein band 4.1-like 2	260	FERM.				cortical actin cytoskeleton organization	extrinsic to membrane|plasma membrane|spectrin	actin binding|structural molecule activity			central_nervous_system(1)|skin(1)	2	Breast(56;0.0639)			OV - Ovarian serous cystadenocarcinoma(155;0.0271)|GBM - Glioblastoma multiforme(226;0.0355)		AACAAAAGTCCAAAGTAGTCT	0.308													22	76					0	0	0.003954	0	0
AKAP7	9465	broad.mit.edu	37	6	131466437	131466437	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:131466437C>T	uc003qck.2	+	2	65	c.32C>T	c.(31-33)TCC>TTC	p.S11F	AKAP7_uc011ebz.1_5'Flank	NM_016377	NP_057461	O43687	AKA7A_HUMAN	A-kinase anchor protein 7 isoform gamma	Error:Variant_position_missing_in_O43687_after_alignment					intracellular signal transduction|ion transport	apical plasma membrane|intracellular|lateral plasma membrane	protein kinase A binding			ovary(2)	2	Breast(56;0.152)			GBM - Glioblastoma multiforme(226;0.0184)|OV - Ovarian serous cystadenocarcinoma(155;0.0345)		GGAATTAATTCCAATGAGTGT	0.303													9	13					0	0	0.004482	0	0
ENPP3	5169	broad.mit.edu	37	6	131973691	131973691	+	Nonsense_Mutation	SNP	G	A	A	rs150884645	byFrequency	TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:131973691G>A	uc003qcu.3	+	5	634	c.287G>A	c.(286-288)TGG>TAG	p.W96*	ENPP3_uc010kfn.1_RNA|ENPP3_uc011ecc.1_Nonsense_Mutation_p.W62*|ENPP3_uc010kfo.1_RNA|ENPP3_uc010kfp.1_RNA|ENPP3_uc010kfq.2_RNA|ENPP3_uc003qcv.2_Nonsense_Mutation_p.W96*	NM_005021	NP_005012	O14638	ENPP3_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	96	Extracellular (Potential).|SMB 2.				immune response|nucleoside triphosphate catabolic process|phosphate metabolic process	extracellular region|integral to plasma membrane|perinuclear region of cytoplasm	metal ion binding|nucleic acid binding|nucleoside-triphosphate diphosphatase activity|nucleotide diphosphatase activity|phosphodiesterase I activity|polysaccharide binding|scavenger receptor activity			ovary(3)|skin(1)	4	Breast(56;0.0753)			GBM - Glioblastoma multiforme(226;0.0252)|OV - Ovarian serous cystadenocarcinoma(155;0.0511)		GCTCGAATATGGATGTGCAAT	0.353													22	62					0	0	0.004656	0	0
ENPP3	5169	broad.mit.edu	37	6	132045225	132045225	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:132045225G>A	uc003qcu.3	+	20	2139	c.1792G>A	c.(1792-1794)GAA>AAA	p.E598K	ENPP3_uc010kfq.2_RNA|ENPP3_uc003qcv.2_Missense_Mutation_p.E598K	NM_005021	NP_005012	O14638	ENPP3_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	598	Extracellular (Potential).				immune response|nucleoside triphosphate catabolic process|phosphate metabolic process	extracellular region|integral to plasma membrane|perinuclear region of cytoplasm	metal ion binding|nucleic acid binding|nucleoside-triphosphate diphosphatase activity|nucleotide diphosphatase activity|phosphodiesterase I activity|polysaccharide binding|scavenger receptor activity			ovary(3)|skin(1)	4	Breast(56;0.0753)			GBM - Glioblastoma multiforme(226;0.0252)|OV - Ovarian serous cystadenocarcinoma(155;0.0511)		TCTCACCCAAGAAGAAAGTAA	0.383													7	20					0	0	0.003080	0	0
CTGF	1490	broad.mit.edu	37	6	132270418	132270418	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:132270418C>T	uc003qcz.2	-	5	1242	c.1036G>A	c.(1036-1038)GGA>AGA	p.G346R		NM_001901	NP_001892	P29279	CTGF_HUMAN	connective tissue growth factor precursor	346	Heparin-binding.				cellular lipid metabolic process|DNA replication|epidermis development|regulation of cell growth|response to wounding	plasma membrane|proteinaceous extracellular matrix	heparin binding|insulin-like growth factor binding				0	Breast(56;0.0602)			GBM - Glioblastoma multiforme(226;0.015)|OV - Ovarian serous cystadenocarcinoma(155;0.0169)		GCCATGTCTCCGTACATCTTC	0.418													29	63					0	0	0.013726	0	0
TAAR6	319100	broad.mit.edu	37	6	132891909	132891909	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:132891909G>A	uc011eck.1	+	1	449	c.449G>A	c.(448-450)GGA>GAA	p.G150E		NM_175067	NP_778237	Q96RI8	TAAR6_HUMAN	trace amine associated receptor 6	150	Helical; Name=4; (Potential).					plasma membrane	G-protein coupled receptor activity			ovary(2)|skin(1)	3	Breast(56;0.112)			OV - Ovarian serous cystadenocarcinoma(155;0.006)|GBM - Glioblastoma multiforme(226;0.00792)		TCTGTGTCAGGAATTTGCATC	0.502													29	229					0	0	0.007291	0	0
VNN2	8875	broad.mit.edu	37	6	133078615	133078616	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:133078615_133078616GG>AA	uc003qdt.2	-	2	294_295	c.283_284CC>TT	c.(283-285)CCT>TTT	p.P95F	VNN2_uc003qds.2_5'UTR|VNN2_uc010kgb.2_Missense_Mutation_p.P95F|VNN2_uc003qdv.2_Missense_Mutation_p.P42F	NM_004665	NP_004656	O95498	VNN2_HUMAN	vanin 2 isoform 1 precursor	95	CN hydrolase.				cellular component movement|pantothenate metabolic process	anchored to membrane|plasma membrane	pantetheine hydrolase activity				0				OV - Ovarian serous cystadenocarcinoma(155;0.00237)|GBM - Glioblastoma multiforme(226;0.0267)		CTCCAGATAAGGGAAAACAGTT	0.401													21	28					0	0	0.004672	0	0
EYA4	2070	broad.mit.edu	37	6	133789771	133789771	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:133789771G>A	uc003qec.3	+	11	1330	c.872G>A	c.(871-873)GGA>GAA	p.G291E	EYA4_uc011ecq.1_Missense_Mutation_p.G237E|EYA4_uc011ecr.1_Missense_Mutation_p.G237E|EYA4_uc003qed.3_Missense_Mutation_p.G291E|EYA4_uc003qee.3_Missense_Mutation_p.G268E|EYA4_uc011ecs.1_Missense_Mutation_p.G291E|uc003qef.1_Intron	NM_004100	NP_004091	O95677	EYA4_HUMAN	eyes absent 4 isoform a	291					anatomical structure morphogenesis|chromatin modification|DNA repair|multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent|visual perception	cytoplasm|nucleus	metal ion binding|protein tyrosine phosphatase activity			large_intestine(2)	2	Colorectal(23;0.221)			GBM - Glioblastoma multiforme(68;0.00457)|OV - Ovarian serous cystadenocarcinoma(155;0.0152)		TCAACGTATGGAGCGTATATG	0.428													20	73					0	0	0.008871	0	0
EYA4	2070	broad.mit.edu	37	6	133802624	133802624	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:133802624C>T	uc003qec.3	+	12	1452	c.994C>T	c.(994-996)CCC>TCC	p.P332S	EYA4_uc011ecq.1_Missense_Mutation_p.P278S|EYA4_uc011ecr.1_Missense_Mutation_p.P284S|EYA4_uc003qed.3_Missense_Mutation_p.P332S|EYA4_uc003qee.3_Missense_Mutation_p.P309S|EYA4_uc011ecs.1_Missense_Mutation_p.P338S|uc003qef.1_Intron	NM_004100	NP_004091	O95677	EYA4_HUMAN	eyes absent 4 isoform a	332					anatomical structure morphogenesis|chromatin modification|DNA repair|multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent|visual perception	cytoplasm|nucleus	metal ion binding|protein tyrosine phosphatase activity			large_intestine(2)	2	Colorectal(23;0.221)			GBM - Glioblastoma multiforme(68;0.00457)|OV - Ovarian serous cystadenocarcinoma(155;0.0152)		CATGCAGAGTCCCTCCACACC	0.423													43	74					0	0	0.014410	0	0
TCF21	6943	broad.mit.edu	37	6	134210590	134210590	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:134210590G>A	uc003qei.3	+	1	331	c.55G>A	c.(55-57)GAA>AAA	p.E19K	uc003qeg.1_5'Flank|TCF21_uc003qej.2_Missense_Mutation_p.E19K	NM_003206	NP_003197	O43680	TCF21_HUMAN	transcription factor 21	19					branching involved in ureteric bud morphogenesis|mesoderm development|negative regulation of androgen receptor signaling pathway|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent	nucleus	androgen receptor binding|E-box binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity				0	Colorectal(23;0.221)|Breast(56;0.247)			GBM - Glioblastoma multiforme(68;0.00518)|OV - Ovarian serous cystadenocarcinoma(155;0.00783)		GGAGATGTTGGAATGTGACGG	0.463													30	51					0	0	0.012213	0	0
SLC2A12	154091	broad.mit.edu	37	6	134350794	134350794	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:134350794C>T	uc003qem.1	-	2	340	c.169G>A	c.(169-171)GAA>AAA	p.E57K		NM_145176	NP_660159	Q8TD20	GTR12_HUMAN	solute carrier family 2 (facilitated glucose	57	Helical; (Potential).					endomembrane system|integral to membrane|perinuclear region of cytoplasm|plasma membrane	D-glucose transmembrane transporter activity			ovary(1)	1	Breast(56;0.214)|Colorectal(23;0.221)			OV - Ovarian serous cystadenocarcinoma(155;0.0101)|GBM - Glioblastoma multiforme(68;0.0123)		ATCCCAAGTTCATAACCCACC	0.527													19	50					0	0	0.007413	0	0
PDE7B	27115	broad.mit.edu	37	6	136495007	136495007	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:136495007C>T	uc003qgp.2	+	9	1087	c.784C>T	c.(784-786)CAT>TAT	p.H262Y	uc003qgq.1_Intron|PDE7B_uc003qgr.2_Missense_Mutation_p.H314Y	NM_018945	NP_061818	Q9NP56	PDE7B_HUMAN	phosphodiesterase 7B	262	Catalytic (By similarity).				signal transduction|synaptic transmission	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding			ovary(1)	1	Colorectal(23;0.24)			OV - Ovarian serous cystadenocarcinoma(155;0.0136)|GBM - Glioblastoma multiforme(68;0.0147)	Dyphylline(DB00651)|Ketotifen(DB00920)	GCTTCTTGCTCATTTGCCAAA	0.418													14	45					0	0	0.003163	0	0
BCLAF1	9774	broad.mit.edu	37	6	136590624	136590624	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:136590624C>T	uc003qgx.1	-	9	2423	c.2170G>A	c.(2170-2172)GAA>AAA	p.E724K	BCLAF1_uc011edb.1_5'Flank|BCLAF1_uc003qgw.1_Missense_Mutation_p.E551K|BCLAF1_uc003qgy.1_Missense_Mutation_p.E722K|BCLAF1_uc011edc.1_RNA|BCLAF1_uc011edd.1_RNA|BCLAF1_uc011ede.1_Missense_Mutation_p.E722K	NM_014739	NP_055554	Q9NYF8	BCLF1_HUMAN	BCL2-associated transcription factor 1 isoform	724					induction of apoptosis|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|protein binding			ovary(1)	1	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00226)|OV - Ovarian serous cystadenocarcinoma(155;0.00331)		GGAGTTTTTTCCTGCTTTCTT	0.393													5	54					0	0	0.000602	0	0
MAP7	9053	broad.mit.edu	37	6	136742909	136742909	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:136742909C>T	uc003qgz.2	-	2	342	c.96G>A	c.(94-96)AAG>AAA	p.K32K	MAP7_uc011edf.1_Silent_p.K17K|MAP7_uc011edg.1_Silent_p.K54K|MAP7_uc010kgu.2_Silent_p.K54K|MAP7_uc011edh.1_Silent_p.K54K|MAP7_uc010kgv.2_Silent_p.K54K|MAP7_uc010kgs.2_5'UTR|MAP7_uc011edi.1_5'UTR|MAP7_uc010kgq.1_Silent_p.K32K|MAP7_uc003qha.1_Silent_p.K32K|MAP7_uc010kgr.2_Intron|MAP7_uc010kgt.2_Silent_p.K54K	NM_003980	NP_003971	Q14244	MAP7_HUMAN	microtubule-associated protein 7	32					establishment or maintenance of cell polarity|microtubule cytoskeleton organization|protein localization in plasma membrane|response to osmotic stress	basolateral plasma membrane|microtubule|microtubule associated complex|nucleus|perinuclear region of cytoplasm	receptor binding|structural molecule activity				0	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00199)|OV - Ovarian serous cystadenocarcinoma(155;0.00643)		AGGCATTTTTCTTATCTTGCA	0.378													10	86					0	0	0.010729	0	0
MAP3K5	4217	broad.mit.edu	37	6	136980443	136980443	+	Missense_Mutation	SNP	A	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:136980443A>T	uc003qhc.2	-	9	1801	c.1440T>A	c.(1438-1440)TTT>TTA	p.F480L	MAP3K5_uc011edj.1_5'Flank|MAP3K5_uc011edk.1_Missense_Mutation_p.F325L|MAP3K5_uc010kgw.1_Missense_Mutation_p.F480L	NM_005923	NP_005914	Q99683	M3K5_HUMAN	mitogen-activated protein kinase kinase kinase	480					activation of JUN kinase activity|activation of MAPKK activity|cellular response to hydrogen peroxide|induction of apoptosis by extracellular signals|interspecies interaction between organisms		ATP binding|caspase activator activity|magnesium ion binding|MAP kinase kinase kinase activity|protein homodimerization activity|protein phosphatase binding			ovary(2)|skin(2)|lung(1)	5	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00137)|OV - Ovarian serous cystadenocarcinoma(155;0.00569)		CCCCCAGAAAAAATCCAACTT	0.413													27	48					0	0	0.006320	0	0
SLC35D3	340146	broad.mit.edu	37	6	137243769	137243769	+	Missense_Mutation	SNP	C	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:137243769C>A	uc003qhe.2	+	1	368	c.203C>A	c.(202-204)CCC>CAC	p.P68H		NM_001008783	NP_001008783	Q5M8T2	S35D3_HUMAN	solute carrier family 35, member D3	68	Helical; (Potential).				carbohydrate transport	integral to membrane				ovary(1)|central_nervous_system(1)	2	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.000136)|OV - Ovarian serous cystadenocarcinoma(155;0.00365)		ATCGCCGTGCCCCCCTTCGGT	0.716													13	19					1.05317e-09	1.13347e-09	0.002450	1	0
IL20RA	53832	broad.mit.edu	37	6	137322987	137322987	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:137322987A>G	uc003qhj.2	-	7	1803	c.1370T>C	c.(1369-1371)TTA>TCA	p.L457S	IL20RA_uc011edl.1_Missense_Mutation_p.L408S|IL20RA_uc003qhk.2_Missense_Mutation_p.L346S|IL20RA_uc003qhi.2_Missense_Mutation_p.L189S	NM_014432	NP_055247	Q9UHF4	I20RA_HUMAN	interleukin 20 receptor, alpha precursor	457	Cytoplasmic (Potential).					integral to membrane	receptor activity			ovary(2)|skin(2)	4	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.000351)|OV - Ovarian serous cystadenocarcinoma(155;0.00459)		CAGGGGGTCTAAGTCTTGGAG	0.597													21	67					0	0	0.002780	0	0
KIAA1244	57221	broad.mit.edu	37	6	138584494	138584494	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:138584494C>T	uc003qhu.2	+	12	1874	c.1874C>T	c.(1873-1875)TCC>TTC	p.S625F		NM_020340	NP_065073	Q5TH69	BIG3_HUMAN	brefeldin A-inhibited guanine	625	SEC7.				regulation of ARF protein signal transduction	cytoplasm|integral to membrane	ARF guanyl-nucleotide exchange factor activity			ovary(1)|skin(1)	2	Breast(32;0.135)			OV - Ovarian serous cystadenocarcinoma(155;0.00102)|GBM - Glioblastoma multiforme(68;0.00259)		TCGGGCAGGTCCGACGTGTCA	0.547													49	104					0	0	0.014410	0	0
KIAA1244	57221	broad.mit.edu	37	6	138601144	138601144	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:138601144C>T	uc003qhu.2	+	14	2304	c.2304C>T	c.(2302-2304)TTC>TTT	p.F768F		NM_020340	NP_065073	Q5TH69	BIG3_HUMAN	brefeldin A-inhibited guanine	768	SEC7.				regulation of ARF protein signal transduction	cytoplasm|integral to membrane	ARF guanyl-nucleotide exchange factor activity			ovary(1)|skin(1)	2	Breast(32;0.135)			OV - Ovarian serous cystadenocarcinoma(155;0.00102)|GBM - Glioblastoma multiforme(68;0.00259)		AGAAGGACTTCATGAAGCAGG	0.547													16	39					0	0	0.006122	0	0
KIAA1244	57221	broad.mit.edu	37	6	138640839	138640839	+	Splice_Site	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:138640839G>A	uc003qhu.2	+	28	4475	c.4475_splice	c.e28-1	p.G1492_splice		NM_020340	NP_065073	Q5TH69	BIG3_HUMAN	brefeldin A-inhibited guanine						regulation of ARF protein signal transduction	cytoplasm|integral to membrane	ARF guanyl-nucleotide exchange factor activity			ovary(1)|skin(1)	2	Breast(32;0.135)			OV - Ovarian serous cystadenocarcinoma(155;0.00102)|GBM - Glioblastoma multiforme(68;0.00259)		TTCTTTTTCAGGACCAGGGTT	0.488													47	148					0	0	0.014410	0	0
KIAA1244	57221	broad.mit.edu	37	6	138657605	138657605	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:138657605C>T	uc003qhu.2	+	34	6516	c.6516C>T	c.(6514-6516)GTC>GTT	p.V2172V		NM_020340	NP_065073	Q5TH69	BIG3_HUMAN	brefeldin A-inhibited guanine	2172					regulation of ARF protein signal transduction	cytoplasm|integral to membrane	ARF guanyl-nucleotide exchange factor activity			ovary(1)|skin(1)	2	Breast(32;0.135)			OV - Ovarian serous cystadenocarcinoma(155;0.00102)|GBM - Glioblastoma multiforme(68;0.00259)		TGGGCCGTGTCTATGACATCA	0.557													17	39					0	0	0.006122	0	0
ECT2L	345930	broad.mit.edu	37	6	139167690	139167690	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:139167690G>A	uc003qif.1	+	6	882	c.779G>A	c.(778-780)GGA>GAA	p.G260E	ECT2L_uc011edq.1_Missense_Mutation_p.G191E	NM_001077706	NP_001071174	Q008S8	ECT2L_HUMAN	epithelial cell transforming sequence 2	260					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity				0						AATATTTCTGGAAGCCATTCC	0.358													27	50					0	0	0.004656	0	0
ECT2L	345930	broad.mit.edu	37	6	139170409	139170409	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:139170409G>A	uc003qif.1	+	7	1010	c.907G>A	c.(907-909)GTG>ATG	p.V303M	ECT2L_uc011edq.1_Missense_Mutation_p.V234M	NM_001077706	NP_001071174	Q008S8	ECT2L_HUMAN	epithelial cell transforming sequence 2	303					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity				0						TCTCCAGATGGTGATGGAGAG	0.393													49	60					0	0	0.014410	0	0
HIVEP2	3097	broad.mit.edu	37	6	143074907	143074907	+	Silent	SNP	G	A	A	rs140448659	by1000genomes	TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:143074907G>A	uc003qjd.2	-	10	7421	c.6678C>T	c.(6676-6678)ATC>ATT	p.I2226I		NM_006734	NP_006725	P31629	ZEP2_HUMAN	human immunodeficiency virus type I enhancer	2226					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(2)|central_nervous_system(1)	6				OV - Ovarian serous cystadenocarcinoma(155;1.61e-05)|GBM - Glioblastoma multiforme(68;0.0102)		GCACCATGGGGATAGGGGCTC	0.547													20	52					0	0	0.010504	0	0
PHACTR2	9749	broad.mit.edu	37	6	144093564	144093564	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:144093564G>A	uc003qjq.3	+	7	1499	c.1369G>A	c.(1369-1371)GAA>AAA	p.E457K	PHACTR2_uc010khh.2_Missense_Mutation_p.E377K|PHACTR2_uc010khi.2_Missense_Mutation_p.E468K|PHACTR2_uc003qjr.3_Missense_Mutation_p.E388K	NM_014721	NP_055536	O75167	PHAR2_HUMAN	phosphatase and actin regulator 2 isoform 3	457							actin binding|protein phosphatase inhibitor activity			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(155;1.58e-05)|GBM - Glioblastoma multiforme(68;0.0386)		TGATGAGGACGAAGACGAAGA	0.483													8	17					0	0	0.006214	0	0
UTRN	7402	broad.mit.edu	37	6	145069578	145069578	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:145069578C>T	uc003qkt.2	+	54	8228	c.8136C>T	c.(8134-8136)TCC>TCT	p.S2712S		NM_007124	NP_009055	P46939	UTRO_HUMAN	utrophin	2712	Spectrin 20.				muscle contraction|muscle organ development|positive regulation of cell-matrix adhesion	cell junction|cytoplasm|cytoskeleton|membrane fraction|nucleus|postsynaptic membrane	actin binding|calcium ion binding|zinc ion binding			ovary(4)|pancreas(1)	5		Ovarian(120;0.218)		OV - Ovarian serous cystadenocarcinoma(155;5.72e-07)|GBM - Glioblastoma multiforme(68;4.9e-05)|Colorectal(48;0.213)		AGGCAGAGTCCGTGCGGAATG	0.493													10	25					0	0	0.006214	0	0
EPM2A	7957	broad.mit.edu	37	6	145948663	145948663	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:145948663G>A	uc003qkw.2	-	4	1242	c.885C>T	c.(883-885)TTC>TTT	p.F295F	EPM2A_uc003qkv.2_Silent_p.F295F|EPM2A_uc010khr.2_Missense_Mutation_p.P215S|EPM2A_uc003qkx.2_Silent_p.F157F|EPM2A_uc003qku.2_Silent_p.F141F	NM_005670	NP_005661	O95278	EPM2A_HUMAN	laforin isoform a	295	Tyrosine-protein phosphatase.				glycogen metabolic process	cytosol|endoplasmic reticulum|nucleus|plasma membrane|polysome	carbohydrate binding|identical protein binding|protein serine/threonine phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			pancreas(1)	1		Ovarian(120;0.162)		OV - Ovarian serous cystadenocarcinoma(155;3.38e-07)|GBM - Glioblastoma multiforme(68;0.0203)		TGGCCATGAGGAAATACTGCA	0.562													4	48					0	0	0.000602	0	0
FBXO30	84085	broad.mit.edu	37	6	146127418	146127418	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:146127418G>A	uc003qla.2	-	2	323	c.124C>T	c.(124-126)CAT>TAT	p.H42Y	uc003qky.1_Intron	NM_032145	NP_115521	Q8TB52	FBX30_HUMAN	F-box only protein 30	42							ubiquitin-protein ligase activity|zinc ion binding			ovary(2)|large_intestine(1)	3		Ovarian(120;0.0776)		OV - Ovarian serous cystadenocarcinoma(155;1.95e-07)|GBM - Glioblastoma multiforme(68;0.0149)		TTACAAGAATGGAAAACTGCA	0.438													22	49					0	0	0.010504	0	0
GRM1	2911	broad.mit.edu	37	6	146351223	146351223	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:146351223C>T	uc010khw.1	+	2	1040	c.570C>T	c.(568-570)ATC>ATT	p.I190I	GRM1_uc010khu.1_Silent_p.I190I|GRM1_uc010khv.1_Silent_p.I190I|GRM1_uc003qll.2_Silent_p.I190I|GRM1_uc011edz.1_Silent_p.I190I|GRM1_uc011eea.1_Silent_p.I190I	NM_000838	NP_000829	Q13255	GRM1_HUMAN	glutamate receptor, metabotropic 1 isoform alpha	190	Extracellular (Potential).				synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			lung(8)|ovary(4)|central_nervous_system(3)|large_intestine(2)|breast(2)	19		Ovarian(120;0.0387)		OV - Ovarian serous cystadenocarcinoma(155;5.35e-08)|GBM - Glioblastoma multiforme(68;0.00762)	Acamprosate(DB00659)|L-Glutamic Acid(DB00142)	CCACAAGCATCGACCTGAGTG	0.507													26	54					0	0	0.008361	0	0
GRM1	2911	broad.mit.edu	37	6	146755520	146755520	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:146755520C>T	uc010khw.1	+	9	3643	c.3173C>T	c.(3172-3174)CCC>CTC	p.P1058L	GRM1_uc010khv.1_3'UTR|GRM1_uc003qll.2_3'UTR|GRM1_uc011edz.1_3'UTR|GRM1_uc011eea.1_3'UTR	NM_000838	NP_000829	Q13255	GRM1_HUMAN	glutamate receptor, metabotropic 1 isoform alpha	1058	Cytoplasmic (Potential).				synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			lung(8)|ovary(4)|central_nervous_system(3)|large_intestine(2)|breast(2)	19		Ovarian(120;0.0387)		OV - Ovarian serous cystadenocarcinoma(155;5.35e-08)|GBM - Glioblastoma multiforme(68;0.00762)	Acamprosate(DB00659)|L-Glutamic Acid(DB00142)	CCCGGTGGTCCCGGGAACGGG	0.667													8	24					0	0	0.003080	0	0
ZC3H12D	340152	broad.mit.edu	37	6	149773795	149773795	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:149773795C>T	uc010kid.2	-	5	896	c.744G>A	c.(742-744)AGG>AGA	p.R248R	PPIL4_uc010kic.2_Intron|ZC3H12D_uc003qmm.2_Silent_p.R248R			A2A288	ZC12D_HUMAN	SubName: Full=Tumor suppressor P58TFL;	248	C3H1-type.					cytoplasm|nucleus	endonuclease activity|nucleic acid binding|zinc ion binding				0		Ovarian(120;0.0907)		OV - Ovarian serous cystadenocarcinoma(155;1.23e-11)|GBM - Glioblastoma multiforme(68;0.0921)		GCTTCGGCTTCCTGCTCAGGA	0.582													9	12					0	0	0.004482	0	0
RAET1K	646024	broad.mit.edu	37	6	150322216	150322216	+	RNA	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:150322216C>T	uc003qnq.2	-	2		c.661G>A				NR_024045				Homo sapiens RAET1K mRNA, partial sequence.												0						TCTGCCGTGTCCGTGGGCTTC	0.512													13	26					0	0	0.001855	0	0
PLEKHG1	57480	broad.mit.edu	37	6	151140886	151140886	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:151140886C>T	uc003qny.1	+	13	1696	c.1384C>T	c.(1384-1386)CCA>TCA	p.P462S	PLEKHG1_uc011eel.1_Missense_Mutation_p.P502S|PLEKHG1_uc011eem.1_Missense_Mutation_p.P521S|PLEKHG1_uc003qnz.2_Missense_Mutation_p.P462S	NM_001029884	NP_001025055	Q9ULL1	PKHG1_HUMAN	pleckstrin homology domain containing, family G	462					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(37;0.0923)	OV - Ovarian serous cystadenocarcinoma(155;6.69e-13)		AGGTTCTGCTCCATATCGGCT	0.438													43	66					0	0	0.011902	0	0
PLEKHG1	57480	broad.mit.edu	37	6	151152940	151152940	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:151152940C>T	uc003qny.1	+	16	3005	c.2693C>T	c.(2692-2694)GCT>GTT	p.A898V	PLEKHG1_uc011eel.1_Missense_Mutation_p.A938V|PLEKHG1_uc011eem.1_Missense_Mutation_p.A957V|PLEKHG1_uc003qnz.2_Missense_Mutation_p.A898V	NM_001029884	NP_001025055	Q9ULL1	PKHG1_HUMAN	pleckstrin homology domain containing, family G	898					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(37;0.0923)	OV - Ovarian serous cystadenocarcinoma(155;6.69e-13)		GAGAGCCAGGCTCTCCTCACG	0.617													33	35					0	0	0.010818	0	0
C6orf97	80129	broad.mit.edu	37	6	151865706	151865706	+	Splice_Site	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:151865706G>A	uc003qol.2	+	4	533	c.444_splice	c.e4-1	p.Q148_splice		NM_025059	NP_079335	Q8IYT3	CF097_HUMAN	hypothetical protein LOC80129												0		Ovarian(120;0.126)	BRCA - Breast invasive adenocarcinoma(37;0.111)	OV - Ovarian serous cystadenocarcinoma(155;1.48e-10)		TTGCCTAACAGAAAGTGTTCA	0.348													3	13					0	0	0.004672	0	0
C6orf97	80129	broad.mit.edu	37	6	151914339	151914339	+	Missense_Mutation	SNP	G	A	A	rs139998977	by1000genomes	TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:151914339G>A	uc003qol.2	+	8	1480	c.1391G>A	c.(1390-1392)CGA>CAA	p.R464Q		NM_025059	NP_079335	Q8IYT3	CF097_HUMAN	hypothetical protein LOC80129	464											0		Ovarian(120;0.126)	BRCA - Breast invasive adenocarcinoma(37;0.111)	OV - Ovarian serous cystadenocarcinoma(155;1.48e-10)		GTTTTAGCTCGAACAGAGCAG	0.448													19	28					0	0	0.010504	0	0
SYNE1	23345	broad.mit.edu	37	6	152738117	152738117	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:152738117C>T	uc010kiw.2	-	41	6057	c.5455G>A	c.(5455-5457)GAA>AAA	p.E1819K	SYNE1_uc003qot.3_Missense_Mutation_p.E1826K|SYNE1_uc003qou.3_Missense_Mutation_p.E1819K|SYNE1_uc010kjb.1_Missense_Mutation_p.E1802K	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	1819	Cytoplasmic (Potential).|Potential.				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		CTCTGCAATTCGCCCTTTTTG	0.517										HNSCC(10;0.0054)			18	71					0	0	0.007413	0	0
SYNE1	23345	broad.mit.edu	37	6	152779912	152779912	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:152779912G>A	uc010kiw.2	-	22	3150	c.2548C>T	c.(2548-2550)CTT>TTT	p.L850F	SYNE1_uc003qot.3_Missense_Mutation_p.L857F|SYNE1_uc003qou.3_Missense_Mutation_p.L850F|SYNE1_uc010kjb.1_Missense_Mutation_p.L833F|SYNE1_uc003qow.2_Missense_Mutation_p.L145F|SYNE1_uc003qox.1_Missense_Mutation_p.L366F|SYNE1_uc003qoz.2_Missense_Mutation_p.L282F|SYNE1_uc003qoy.2_Missense_Mutation_p.L417F	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	850	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		TGTTTAAAAAGGGCACTCGAT	0.383										HNSCC(10;0.0054)			19	38					0	0	0.014323	0	0
SYNE1	23345	broad.mit.edu	37	6	152804247	152804247	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:152804247C>T	uc010kiw.2	-	14	1925	c.1323G>A	c.(1321-1323)ACG>ACA	p.T441T	SYNE1_uc003qot.3_Silent_p.T448T|SYNE1_uc003qou.3_Silent_p.T441T|SYNE1_uc010kjb.1_Silent_p.T424T|SYNE1_uc003qpa.1_Silent_p.T441T|SYNE1_uc003qox.1_5'UTR	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	441	Potential.|Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		TCCGTTGTATCGTGTTTGCTG	0.502										HNSCC(10;0.0054)			59	163					0	0	0.014410	0	0
SYNE1	23345	broad.mit.edu	37	6	152823854	152823854	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:152823854C>T	uc010kiw.2	-	10	1404	c.802G>A	c.(802-804)GAG>AAG	p.E268K	SYNE1_uc003qot.3_Missense_Mutation_p.E275K|SYNE1_uc003qou.3_Missense_Mutation_p.E268K|SYNE1_uc010kjb.1_Missense_Mutation_p.E268K|SYNE1_uc003qpa.1_Missense_Mutation_p.E268K	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	268	Actin-binding.|CH 2.|Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		ATAGATTTCTCATCTGGTTTA	0.348										HNSCC(10;0.0054)			16	23					0	0	0.006122	0	0
SYNE1	23345	broad.mit.edu	37	6	152831412	152831412	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:152831412G>A	uc010kiw.2	-	8	1099	c.497C>T	c.(496-498)CCA>CTA	p.P166L	SYNE1_uc003qot.3_Missense_Mutation_p.P173L|SYNE1_uc003qou.3_Missense_Mutation_p.P166L|SYNE1_uc010kjb.1_Missense_Mutation_p.P166L|SYNE1_uc003qpa.1_Missense_Mutation_p.P166L	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	166	Actin-binding.|Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		TTTACTTGGTGGGCTGGGAGT	0.488										HNSCC(10;0.0054)			23	60					0	0	0.014323	0	0
SYNE1	23345	broad.mit.edu	37	6	152847286	152847286	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:152847286C>T	uc010kiw.2	-	5	756	c.154G>A	c.(154-156)GAT>AAT	p.D52N	SYNE1_uc003qot.3_Missense_Mutation_p.D52N|SYNE1_uc003qou.3_Missense_Mutation_p.D52N|SYNE1_uc010kjb.1_Missense_Mutation_p.D52N|SYNE1_uc003qpa.1_Missense_Mutation_p.D52N	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	52	Actin-binding.|Cytoplasmic (Potential).|CH 1.				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		TCAAAAAGATCGTCCACCACC	0.343										HNSCC(10;0.0054)			25	36					0	0	0.007291	0	0
MYCT1	80177	broad.mit.edu	37	6	153043382	153043382	+	Silent	SNP	T	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:153043382T>C	uc003qpd.3	+	2	710	c.702T>C	c.(700-702)GAT>GAC	p.D234D	MYCT1_uc010kjc.1_Silent_p.D186D|MYCT1_uc003qpc.3_Silent_p.D234D	NM_025107	NP_079383	Q8N699	MYCT1_HUMAN	myc target 1	234						nucleus				ovary(1)	1		Ovarian(120;0.0654)		OV - Ovarian serous cystadenocarcinoma(155;1.33e-10)|BRCA - Breast invasive adenocarcinoma(81;0.143)		CATTCCCAGATTCCTGAGTAG	0.468													7	77					0	0	0.003080	0	0
VIP	7432	broad.mit.edu	37	6	153076443	153076443	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:153076443C>T	uc003qpe.2	+	4	442	c.270C>T	c.(268-270)TTC>TTT	p.F90F	VIP_uc003qpf.2_Silent_p.F90F|VIP_uc010kjd.2_Silent_p.F90F	NM_003381	NP_003372	P01282	VIP_HUMAN	vasoactive intestinal peptide isoform 1	90					body fluid secretion|G-protein coupled receptor protein signaling pathway|positive regulation of cell proliferation	extracellular region	neuropeptide hormone activity				0		Ovarian(120;0.0654)		OV - Ovarian serous cystadenocarcinoma(155;4.5e-11)|BRCA - Breast invasive adenocarcinoma(81;0.144)		CCAGTGACTTCAGTAAACTCT	0.308													18	32					0	0	0.012319	0	0
TIAM2	26230	broad.mit.edu	37	6	155451112	155451113	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:155451112_155451113CC>TT	uc003qqb.2	+	6	2028_2029	c.755_756CC>TT	c.(754-756)TCC>TTT	p.S252F	TIAM2_uc003qqe.2_Missense_Mutation_p.S252F	NM_012454	NP_036586	Q8IVF5	TIAM2_HUMAN	T-cell lymphoma invasion and metastasis 2	252					apoptosis|cellular lipid metabolic process|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|filopodium|growth cone|lamellipodium	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			ovary(3)|breast(1)	4		Ovarian(120;0.196)		OV - Ovarian serous cystadenocarcinoma(155;8.1e-13)|BRCA - Breast invasive adenocarcinoma(81;0.0053)		TGGTACGACTCCCCTTGGGGCA	0.658													27	71					0	0	0.004672	0	0
ARID1B	57492	broad.mit.edu	37	6	157521850	157521850	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:157521850C>T	uc003qqn.2	+	18	4220	c.4068C>T	c.(4066-4068)CGC>CGT	p.R1356R	ARID1B_uc003qqo.2_Silent_p.R1316R|ARID1B_uc003qqp.2_Silent_p.R1303R	NM_017519	NP_059989	Q8NFD5	ARI1B_HUMAN	AT rich interactive domain 1B (SWI1-like)	1361					chromatin-mediated maintenance of transcription|nervous system development|transcription, DNA-dependent	SWI/SNF complex	DNA binding|protein binding|transcription coactivator activity			ovary(1)|breast(1)	2		Breast(66;0.000162)|Ovarian(120;0.0265)		OV - Ovarian serous cystadenocarcinoma(65;3.19e-17)|BRCA - Breast invasive adenocarcinoma(81;1.01e-05)		ATTACAAACGCCATATGGACG	0.463													24	57					0	0	0.004656	0	0
SNX9	51429	broad.mit.edu	37	6	158296089	158296089	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:158296089C>T	uc003qqv.1	+	4	354	c.181C>T	c.(181-183)CCC>TCC	p.P61S		NM_016224	NP_057308	Q9Y5X1	SNX9_HUMAN	sorting nexin 9	61	SH3.				cell communication|intracellular protein transport|lipid tube assembly|positive regulation of GTPase activity|positive regulation of protein oligomerization|receptor-mediated endocytosis	clathrin-coated vesicle|cytoplasmic vesicle membrane|extrinsic to internal side of plasma membrane|ruffle|trans-Golgi network	1-phosphatidylinositol binding|protein homodimerization activity|ubiquitin protein ligase binding				0		Breast(66;0.000776)|Ovarian(120;0.0303)|Prostate(117;0.167)		OV - Ovarian serous cystadenocarcinoma(65;8.06e-18)|BRCA - Breast invasive adenocarcinoma(81;4.48e-05)		TCAGATTTTACCCAGTGATGG	0.443													7	43					0	0	0.003080	0	0
SYNJ2	8871	broad.mit.edu	37	6	158514020	158514020	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:158514020G>A	uc003qqx.1	+	26	3703	c.3628G>A	c.(3628-3630)GAG>AAG	p.E1210K	SYNJ2_uc003qqw.1_Missense_Mutation_p.E1210K|SYNJ2_uc003qqy.1_Missense_Mutation_p.E923K|SYNJ2_uc003qqz.1_Missense_Mutation_p.E827K|SYNJ2_uc003qra.1_Missense_Mutation_p.E553K|SYNJ2_uc010kjp.1_Missense_Mutation_p.E93K	NM_003898	NP_003889	O15056	SYNJ2_HUMAN	synaptojanin 2	1210	Catalytic (By similarity).|Pro-rich.						nucleotide binding|phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|RNA binding			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(65;4.42e-18)|BRCA - Breast invasive adenocarcinoma(81;4.23e-05)		CTCTGAACCAGAGCCCACACC	0.597													11	45					0	0	0.008291	0	0
EZR	7430	broad.mit.edu	37	6	159206478	159206478	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:159206478G>A	uc003qrt.3	-	4	545	c.330C>T	c.(328-330)ATC>ATT	p.I110I	EZR_uc011efs.1_Silent_p.I78I|EZR_uc003qru.3_Silent_p.I110I	NM_003379	NP_003370	P15311	EZRI_HUMAN	ezrin	110	FERM.				actin filament bundle assembly|axon guidance|cytoskeletal anchoring at plasma membrane|leukocyte cell-cell adhesion|membrane to membrane docking|regulation of cell shape	actin filament|apical plasma membrane|basolateral plasma membrane|cortical cytoskeleton|cytosol|extrinsic to membrane|filopodium|microvillus membrane|nucleolus|ruffle membrane	actin filament binding|cell adhesion molecule binding			ovary(1)	1		Breast(66;0.000776)|Ovarian(120;0.0303)		OV - Ovarian serous cystadenocarcinoma(65;2.16e-17)|BRCA - Breast invasive adenocarcinoma(81;6.58e-06)		CATCGCTAAGGATTCCTTCCT	0.522													15	39					0	0	0.003163	0	0
FNDC1	84624	broad.mit.edu	37	6	159644651	159644651	+	Missense_Mutation	SNP	A	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:159644651A>T	uc010kjv.2	+	7	1058	c.858A>T	c.(856-858)GAA>GAT	p.E286D	FNDC1_uc010kjw.1_Missense_Mutation_p.E234D	NM_032532	NP_115921	Q4ZHG4	FNDC1_HUMAN	fibronectin type III domain containing 1	286	Fibronectin type-III 3.					extracellular region				large_intestine(4)|ovary(3)|central_nervous_system(1)	8		Breast(66;0.000781)|Ovarian(120;0.0308)|Prostate(117;0.195)		OV - Ovarian serous cystadenocarcinoma(65;2.6e-16)|BRCA - Breast invasive adenocarcinoma(81;1.06e-05)		CTGTTCTGGAAAAACAGAAGA	0.408													10	25					0	0	0.006214	0	0
FNDC1	84624	broad.mit.edu	37	6	159653975	159653975	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:159653975C>T	uc010kjv.2	+	11	2631	c.2431C>T	c.(2431-2433)CGG>TGG	p.R811W	FNDC1_uc010kjw.1_Missense_Mutation_p.R696W	NM_032532	NP_115921	Q4ZHG4	FNDC1_HUMAN	fibronectin type III domain containing 1	811						extracellular region				large_intestine(4)|ovary(3)|central_nervous_system(1)	8		Breast(66;0.000781)|Ovarian(120;0.0308)|Prostate(117;0.195)		OV - Ovarian serous cystadenocarcinoma(65;2.6e-16)|BRCA - Breast invasive adenocarcinoma(81;1.06e-05)		GCTGCGGGCCCGGCCTGCCTC	0.647													5	14					0	0	0.001984	0	0
FNDC1	84624	broad.mit.edu	37	6	159677661	159677661	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:159677661G>A	uc010kjv.2	+	18	5372	c.5172G>A	c.(5170-5172)ACG>ACA	p.T1724T		NM_032532	NP_115921	Q4ZHG4	FNDC1_HUMAN	fibronectin type III domain containing 1	1724	Fibronectin type-III 5.					extracellular region				large_intestine(4)|ovary(3)|central_nervous_system(1)	8		Breast(66;0.000781)|Ovarian(120;0.0308)|Prostate(117;0.195)		OV - Ovarian serous cystadenocarcinoma(65;2.6e-16)|BRCA - Breast invasive adenocarcinoma(81;1.06e-05)		AGCCCAACACGAGGTACGATG	0.423													24	73					0	0	0.003330	0	0
MAS1	4142	broad.mit.edu	37	6	160328631	160328632	+	Missense_Mutation	DNP	GG	AA	AA	rs147542691		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:160328631_160328632GG>AA	uc003qsz.2	+	1	658_659	c.644_645GG>AA	c.(643-645)CGG>CAA	p.R215Q		NM_002377	NP_002368	P04201	MAS_HUMAN	MAS1 oncogene	215	Cytoplasmic (Potential).				anatomical structure morphogenesis|cell proliferation|protein kinase C signaling cascade	integral to plasma membrane	angiotensin type II receptor activity			ovary(2)|lung(2)	4		Breast(66;0.000776)|Ovarian(120;0.0303)		OV - Ovarian serous cystadenocarcinoma(65;2.44e-18)|BRCA - Breast invasive adenocarcinoma(81;5.6e-06)		GTGAAGATCCGGAAGAACACGT	0.495													16	36					0	0	0.004672	0	0
SLC22A2	6582	broad.mit.edu	37	6	160679405	160679405	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:160679405C>T	uc003qtf.2	-	1	555	c.385G>A	c.(385-387)GAG>AAG	p.E129K	SLC22A2_uc003qte.1_Missense_Mutation_p.E129K|SLC22A2_uc003qth.1_Missense_Mutation_p.E129K	NM_003058	NP_003049	O15244	S22A2_HUMAN	solute carrier family 22 member 2	129	Extracellular (Potential).				body fluid secretion|neurotransmitter biosynthetic process|neurotransmitter secretion	integral to plasma membrane|membrane fraction	neurotransmitter transporter activity|organic cation transmembrane transporter activity			breast(1)|skin(1)	2		Breast(66;0.000776)|Ovarian(120;0.0303)		OV - Ovarian serous cystadenocarcinoma(65;2.28e-17)|BRCA - Breast invasive adenocarcinoma(81;6.29e-06)		CCAGGCGTCTCGTACACCCAG	0.622													9	87					0	0	0.013537	0	0
SLC22A3	6581	broad.mit.edu	37	6	160829918	160829918	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:160829918C>T	uc003qti.2	+	4	849	c.822C>T	c.(820-822)ATC>ATT	p.I274I	SLC22A3_uc011efx.1_RNA	NM_021977	NP_068812	O75751	S22A3_HUMAN	solute carrier family 22 member 3	274	Helical; (Potential).					integral to plasma membrane|membrane fraction	protein binding|quaternary ammonium group transmembrane transporter activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Breast(66;0.00028)|Ovarian(120;0.0308)|Prostate(117;0.218)		OV - Ovarian serous cystadenocarcinoma(65;9.47e-17)|BRCA - Breast invasive adenocarcinoma(81;9.75e-06)		AGTTAGCCATCACGCTGCCCA	0.408													11	28					0	0	0.001855	0	0
SLC22A3	6581	broad.mit.edu	37	6	160831796	160831796	+	Missense_Mutation	SNP	G	A	A	rs151135411	byFrequency	TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:160831796G>A	uc003qti.2	+	5	920	c.893G>A	c.(892-894)CGG>CAG	p.R298Q	SLC22A3_uc011efx.1_RNA	NM_021977	NP_068812	O75751	S22A3_HUMAN	solute carrier family 22 member 3	298						integral to plasma membrane|membrane fraction	protein binding|quaternary ammonium group transmembrane transporter activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Breast(66;0.00028)|Ovarian(120;0.0308)|Prostate(117;0.218)		OV - Ovarian serous cystadenocarcinoma(65;9.47e-17)|BRCA - Breast invasive adenocarcinoma(81;9.75e-06)		CTGATTACTCGGAAGAAAGGA	0.428													18	55					0	0	0.006122	0	0
LPA	4018	broad.mit.edu	37	6	161007585	161007585	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:161007585C>T	uc003qtl.2	-	26	4145	c.4025G>A	c.(4024-4026)AGA>AAA	p.R1342K		NM_005577	NP_005568	P08519	APOA_HUMAN	lipoprotein Lp(a) precursor	3850	Kringle 34.				blood circulation|lipid metabolic process|lipid transport|lipoprotein metabolic process|proteolysis|receptor-mediated endocytosis	plasma lipoprotein particle	apolipoprotein binding|endopeptidase inhibitor activity|fibronectin binding|heparin binding|serine-type endopeptidase activity			ovary(3)|skin(2)|pancreas(1)	6		Breast(66;0.000496)|Ovarian(120;0.0303)|Prostate(117;0.0965)		OV - Ovarian serous cystadenocarcinoma(65;2.5e-17)|BRCA - Breast invasive adenocarcinoma(81;6.48e-06)	Aminocaproic Acid(DB00513)	GTACTCCCATCTGACACTGGG	0.502													20	48					0	0	0.008871	0	0
PLG	5340	broad.mit.edu	37	6	161143527	161143527	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:161143527G>A	uc003qtm.3	+	10	1247	c.1184G>A	c.(1183-1185)GGA>GAA	p.G395E		NM_000301	NP_000292	P00747	PLMN_HUMAN	plasminogen	395	Kringle 4.				extracellular matrix disassembly|fibrinolysis|negative regulation of cell proliferation|negative regulation of cell-substrate adhesion|negative regulation of fibrinolysis|platelet activation|platelet degranulation|positive regulation of fibrinolysis|proteolysis|tissue remodeling	extracellular space|extrinsic to external side of plasma membrane|platelet alpha granule lumen	apolipoprotein binding|cell surface binding|serine-type endopeptidase activity			skin(3)|ovary(1)	4				OV - Ovarian serous cystadenocarcinoma(65;5.24e-17)|BRCA - Breast invasive adenocarcinoma(81;7.08e-06)	Aminocaproic Acid(DB00513)|Streptokinase(DB00086)|Tranexamic Acid(DB00302)|Urokinase(DB00013)	ACCACCACAGGAAAGAAGTGT	0.493													17	32					0	0	0.006122	0	0
PLG	5340	broad.mit.edu	37	6	161152165	161152165	+	Missense_Mutation	SNP	G	A	A	rs36089164		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:161152165G>A	uc003qtm.3	+	11	1402	c.1339G>A	c.(1339-1341)GAG>AAG	p.E447K		NM_000301	NP_000292	P00747	PLMN_HUMAN	plasminogen	447	Kringle 4.				extracellular matrix disassembly|fibrinolysis|negative regulation of cell proliferation|negative regulation of cell-substrate adhesion|negative regulation of fibrinolysis|platelet activation|platelet degranulation|positive regulation of fibrinolysis|proteolysis|tissue remodeling	extracellular space|extrinsic to external side of plasma membrane|platelet alpha granule lumen	apolipoprotein binding|cell surface binding|serine-type endopeptidase activity			skin(3)|ovary(1)	4				OV - Ovarian serous cystadenocarcinoma(65;5.24e-17)|BRCA - Breast invasive adenocarcinoma(81;7.08e-06)	Aminocaproic Acid(DB00513)|Streptokinase(DB00086)|Tranexamic Acid(DB00302)|Urokinase(DB00013)	CGTCAGGTGGGAGTACTGCAA	0.507													26	43					0	0	0.003330	0	0
PLG	5340	broad.mit.edu	37	6	161173212	161173212	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:161173212C>T	uc003qtm.3	+	18	2254	c.2191C>T	c.(2191-2193)CGC>TGC	p.R731C		NM_000301	NP_000292	P00747	PLMN_HUMAN	plasminogen	731	Peptidase S1.				extracellular matrix disassembly|fibrinolysis|negative regulation of cell proliferation|negative regulation of cell-substrate adhesion|negative regulation of fibrinolysis|platelet activation|platelet degranulation|positive regulation of fibrinolysis|proteolysis|tissue remodeling	extracellular space|extrinsic to external side of plasma membrane|platelet alpha granule lumen	apolipoprotein binding|cell surface binding|serine-type endopeptidase activity			skin(3)|ovary(1)	4				OV - Ovarian serous cystadenocarcinoma(65;5.24e-17)|BRCA - Breast invasive adenocarcinoma(81;7.08e-06)	Aminocaproic Acid(DB00513)|Streptokinase(DB00086)|Tranexamic Acid(DB00302)|Urokinase(DB00013)	AGTGTGCAATCGCTATGAGTT	0.473													25	35					0	0	0.003954	0	0
MAP3K4	4216	broad.mit.edu	37	6	161529837	161529837	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:161529837C>T	uc003qtn.2	+	22	4324	c.4182C>T	c.(4180-4182)TTC>TTT	p.F1394F	MAP3K4_uc010kkc.1_Silent_p.F1390F|MAP3K4_uc003qto.2_Silent_p.F1344F|MAP3K4_uc011efz.1_RNA|MAP3K4_uc011ega.1_Silent_p.F847F|MAP3K4_uc003qtp.2_Silent_p.F330F|MAP3K4_uc003qtq.2_Silent_p.F83F	NM_005922	NP_005913	Q9Y6R4	M3K4_HUMAN	mitogen-activated protein kinase kinase kinase 4	1394	Protein kinase.				activation of MAPKK activity|JNK cascade|positive regulation of JUN kinase activity	perinuclear region of cytoplasm	ATP binding|MAP kinase kinase kinase activity|metal ion binding|protein binding			ovary(3)|lung(3)|skin(2)|stomach(1)	9		Breast(66;0.000776)|Ovarian(120;0.0367)|Prostate(117;0.0771)		OV - Ovarian serous cystadenocarcinoma(65;1.85e-18)|BRCA - Breast invasive adenocarcinoma(81;3.04e-05)		TGAAAATATTCGAAGGCATCA	0.363													25	73					0	0	0.007291	0	0
GPR31	2853	broad.mit.edu	37	6	167570663	167570663	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:167570663C>T	uc011egq.1	-	1	657	c.657G>A	c.(655-657)CGG>CGA	p.R219R		NM_005299	NP_005290	O00270	GPR31_HUMAN	G protein-coupled receptor 31	219	Cytoplasmic (Potential).					integral to plasma membrane	G-protein coupled receptor activity				0		Breast(66;1.53e-05)|Ovarian(120;0.0606)		OV - Ovarian serous cystadenocarcinoma(33;4.81e-20)|BRCA - Breast invasive adenocarcinoma(81;4.45e-06)|GBM - Glioblastoma multiforme(31;0.00492)		GTGCCTGGGCCCGCTGAAGCT	0.572													8	51					0	0	0.003080	0	0
UNC93A	54346	broad.mit.edu	37	6	167705012	167705012	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:167705012C>T	uc003qvq.2	+	1	210	c.35C>T	c.(34-36)TCC>TTC	p.S12F	UNC93A_uc003qvr.2_Missense_Mutation_p.S12F	NM_018974	NP_061847	Q86WB7	UN93A_HUMAN	unc-93 homolog A isoform 1	12	Helical; (Potential).					integral to membrane|plasma membrane					0		Breast(66;7.62e-05)|Ovarian(120;0.105)		OV - Ovarian serous cystadenocarcinoma(33;2.22e-20)|BRCA - Breast invasive adenocarcinoma(81;6.17e-07)|GBM - Glioblastoma multiforme(31;0.00492)		CTTGTGGTTTCCTTTGGGTTC	0.453													25	51					0	0	0.005443	0	0
TTLL2	83887	broad.mit.edu	37	6	167754924	167754924	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:167754924G>A	uc003qvs.1	+	3	1624	c.1536G>A	c.(1534-1536)CGG>CGA	p.R512R	TTLL2_uc011egr.1_RNA	NM_031949	NP_114155	Q9BWV7	TTLL2_HUMAN	tubulin tyrosine ligase-like family, member 2	512					protein modification process		ATP binding|tubulin-tyrosine ligase activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(66;7.8e-06)|Ovarian(120;0.024)		OV - Ovarian serous cystadenocarcinoma(33;2.22e-20)|BRCA - Breast invasive adenocarcinoma(81;6.17e-07)|GBM - Glioblastoma multiforme(31;0.00492)		CCAAGTTACGGAGCAGGCACA	0.577													11	49					0	0	0.002450	0	0
SMOC2	64094	broad.mit.edu	37	6	169053845	169053845	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:169053845G>A	uc003qws.1	+	11	1242	c.1222G>A	c.(1222-1224)GAA>AAA	p.E408K	SMOC2_uc003qwr.1_Missense_Mutation_p.E419K|SMOC2_uc011egu.1_Missense_Mutation_p.E85K	NM_022138	NP_071421	Q9H3U7	SMOC2_HUMAN	SPARC related modular calcium binding 2	408	2 (Potential).|EF-hand 2.				signal transduction	basement membrane	calcium ion binding			ovary(1)	1		Breast(66;0.000141)|Esophageal squamous(34;0.222)|Ovarian(120;0.231)		OV - Ovarian serous cystadenocarcinoma(33;1.31e-19)|BRCA - Breast invasive adenocarcinoma(81;3.06e-06)|GBM - Glioblastoma multiforme(31;0.00109)		CTCCGTACAAGAACTGATGGG	0.498													23	30					0	0	0.004656	0	0
THBS2	7058	broad.mit.edu	37	6	169623568	169623568	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:169623568C>T	uc003qwt.2	-	19	3024	c.2776G>A	c.(2776-2778)GAT>AAT	p.D926N		NM_003247	NP_003238	P35442	TSP2_HUMAN	thrombospondin 2 precursor	926	TSP type-3 8.				cell adhesion	extracellular region	calcium ion binding|heparin binding|protein binding|structural molecule activity			ovary(5)	5		Breast(66;1.78e-05)|Ovarian(120;0.0728)|Esophageal squamous(34;0.247)		OV - Ovarian serous cystadenocarcinoma(33;1.85e-21)|BRCA - Breast invasive adenocarcinoma(81;1.43e-06)|GBM - Glioblastoma multiforme(31;0.000379)		CCCCGTCCATCACCTATGCAC	0.373													14	45					0	0	0.001855	0	0
C6orf70	55780	broad.mit.edu	37	6	170156440	170156440	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr6:170156440C>T	uc003qxg.1	+	4	355	c.322C>T	c.(322-324)CCT>TCT	p.P108S	C6orf70_uc011ehb.1_5'UTR|C6orf70_uc003qxh.1_Missense_Mutation_p.P108S|C6orf70_uc010kky.1_5'UTR	NM_018341	NP_060811	Q5T6L9	CF070_HUMAN	hypothetical protein LOC55780	108						integral to membrane				ovary(1)	1		Breast(66;5.08e-05)|Ovarian(120;0.208)		OV - Ovarian serous cystadenocarcinoma(33;1.2e-22)|BRCA - Breast invasive adenocarcinoma(81;1.49e-07)|GBM - Glioblastoma multiforme(31;0.00191)		ATAGTTATTTCCTGAAATATT	0.333													17	32					0	0	0.007413	0	0
ZFAND2A	90637	broad.mit.edu	37	7	1197838	1197839	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:1197838_1197839GG>AA	uc003skc.2	-	2	311_312	c.10_11CC>TT	c.(10-12)CCT>TTT	p.P4F	ZFAND2A_uc003skd.3_Missense_Mutation_p.P4F|uc003skf.1_5'Flank	NM_182491	NP_872297	Q8N6M9	ZFN2A_HUMAN	zinc finger, AN1-type domain 2A	4						cytoplasm|nucleus	zinc ion binding			ovary(1)	1		Ovarian(82;0.11)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0178)|OV - Ovarian serous cystadenocarcinoma(56;1.82e-15)		CCCCAAATCAGGAAACTCCATT	0.431													33	202					0	0	0.004672	0	0
MICALL2	79778	broad.mit.edu	37	7	1482016	1482016	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:1482016A>G	uc003skj.3	-	7	1670	c.1523T>C	c.(1522-1524)CTT>CCT	p.L508P	MICALL2_uc003ski.3_5'UTR	NM_182924	NP_891554	Q8IY33	MILK2_HUMAN	MICAL-like 2 isoform 1	508						cytoplasm|cytoskeleton	zinc ion binding			central_nervous_system(1)	1		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0178)|OV - Ovarian serous cystadenocarcinoma(56;6.01e-15)		AGGGAGGCCAAGCACCCGGGG	0.632													70	130					0	0	0.014410	0	0
CARD11	84433	broad.mit.edu	37	7	2968236	2968236	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:2968236G>A	uc003smv.2	-	13	2154	c.1750C>T	c.(1750-1752)CGC>TGC	p.R584C		NM_032415	NP_115791	Q9BXL7	CAR11_HUMAN	caspase recruitment domain family, member 11	584					positive regulation of cytokine production|positive regulation of NF-kappaB transcription factor activity|regulation of apoptosis|T cell costimulation|T cell receptor signaling pathway	cytosol|membrane raft|plasma membrane	CARD domain binding|guanylate kinase activity			haematopoietic_and_lymphoid_tissue(43)|ovary(2)|kidney(2)|skin(2)|central_nervous_system(1)	50		Ovarian(82;0.0115)		OV - Ovarian serous cystadenocarcinoma(56;8.44e-14)		ACCCACCTGCGATGGGGCGCG	0.662			Mis		DLBCL								19	51					0	0	0.002780	0	0
CARD11	84433	broad.mit.edu	37	7	2976698	2976698	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:2976698G>A	uc003smv.2	-	9	1718	c.1314C>T	c.(1312-1314)CTC>CTT	p.L438L		NM_032415	NP_115791	Q9BXL7	CAR11_HUMAN	caspase recruitment domain family, member 11	438	Potential.				positive regulation of cytokine production|positive regulation of NF-kappaB transcription factor activity|regulation of apoptosis|T cell costimulation|T cell receptor signaling pathway	cytosol|membrane raft|plasma membrane	CARD domain binding|guanylate kinase activity			haematopoietic_and_lymphoid_tissue(43)|ovary(2)|kidney(2)|skin(2)|central_nervous_system(1)	50		Ovarian(82;0.0115)		OV - Ovarian serous cystadenocarcinoma(56;8.44e-14)		TGTCCTTGGAGAGGCGCCGCA	0.662			Mis		DLBCL								13	34					0	0	0.001855	0	0
SDK1	221935	broad.mit.edu	37	7	3861081	3861081	+	Splice_Site	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:3861081G>A	uc003smx.2	+	5	853	c.714_splice	c.e5-1	p.I238_splice		NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor						cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		TTCTGAAACAGAGCCATCACA	0.453													20	43					0	0	0.012319	0	0
SDK1	221935	broad.mit.edu	37	7	3990647	3990647	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:3990647G>A	uc003smx.2	+	6	1079	c.940G>A	c.(940-942)GAA>AAA	p.E314K		NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	314	Ig-like C2-type 3.				cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		GACCACCTTGGAATGTATAGC	0.547													17	26					0	0	0.007413	0	0
SDK1	221935	broad.mit.edu	37	7	4188998	4188998	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:4188998C>T	uc003smx.2	+	30	4667	c.4528C>T	c.(4528-4530)CGG>TGG	p.R1510W	SDK1_uc010kso.2_Missense_Mutation_p.R786W|SDK1_uc003smy.2_5'UTR	NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	1510	Fibronectin type-III 9.				cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		CTCCCCCATCCGGTACTTCAC	0.677													5	10					0	0	0.000602	0	0
SDK1	221935	broad.mit.edu	37	7	4304908	4304908	+	Silent	SNP	G	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:4304908G>T	uc003smx.2	+	45	6673	c.6534G>T	c.(6532-6534)GCG>GCT	p.A2178A	SDK1_uc010kso.2_Silent_p.A1434A|SDK1_uc003smy.2_Intron|SDK1_uc003smz.2_Silent_p.A238A	NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	2178	Extracellular (Potential).|Cytoplasmic (Potential).				cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		GCTCCGAGGCGGGCGCGCAGC	0.721													10	12					3.07112e-06	3.28926e-06	0.010729	1	0
RBAK	57786	broad.mit.edu	37	7	5103977	5103977	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:5103977C>T	uc010kss.1	+	6	1214	c.890C>T	c.(889-891)TCC>TTC	p.S297F	LOC389458_uc003snr.2_Intron|RBAK_uc003sns.1_Missense_Mutation_p.S297F	NM_021163	NP_066986	Q9NYW8	RBAK_HUMAN	RB-associated KRAB repressor	297	C2H2-type 2.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			ovary(3)|kidney(1)|skin(1)	5		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0916)|OV - Ovarian serous cystadenocarcinoma(56;2.44e-14)		TGTGGGAAATCCTTCAGCCAA	0.403													16	23					0	0	0.004990	0	0
SLC29A4	222962	broad.mit.edu	37	7	5338676	5338676	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:5338676G>A	uc003sod.2	+	8	1101	c.940G>A	c.(940-942)GAG>AAG	p.E314K	SLC29A4_uc011jwg.1_RNA|SLC29A4_uc003soc.2_Missense_Mutation_p.E314K|SLC29A4_uc003soe.2_Missense_Mutation_p.E300K|SLC29A4_uc010ksw.2_RNA	NM_153247	NP_694979	Q7RTT9	S29A4_HUMAN	solute carrier family 29 (nucleoside	314	Cytoplasmic (Potential).				nucleobase, nucleoside and nucleotide metabolic process	apical plasma membrane|integral to membrane	nucleoside transmembrane transporter activity			liver(1)	1		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0903)|OV - Ovarian serous cystadenocarcinoma(56;2.65e-15)		CCCAGCCCACGAGGTGACCGG	0.692													8	13					0	0	0.003080	0	0
TNRC18	84629	broad.mit.edu	37	7	5410863	5410863	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:5410863G>A	uc003soi.3	-	11	3711	c.3362C>T	c.(3361-3363)CCC>CTC	p.P1121L		NM_001080495	NP_001073964	O15417	TNC18_HUMAN	trinucleotide repeat containing 18	1121	Pro-rich.						DNA binding				0		Ovarian(82;0.142)		UCEC - Uterine corpus endometrioid carcinoma (126;0.195)|OV - Ovarian serous cystadenocarcinoma(56;5.32e-15)		CAGGCGCTCGGGCCCATCAGC	0.706													9	28					0	0	0.006214	0	0
FSCN1	6624	broad.mit.edu	37	7	5643510	5643510	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:5643510C>T	uc003sou.2	+	4	1242	c.1128C>T	c.(1126-1128)TTC>TTT	p.F376F	FSCN1_uc003sov.2_Silent_p.F98F|FSCN1_uc003sow.2_Silent_p.F98F	NM_003088	NP_003079	Q16658	FSCN1_HUMAN	fascin 1	376					actin filament bundle assembly|cell migration|cell proliferation	cell junction|cytoplasm|filopodium|invadopodium|stress fiber	actin filament binding|drug binding|protein binding, bridging			ovary(1)	1		Ovarian(82;0.0694)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0986)|OV - Ovarian serous cystadenocarcinoma(56;1.21e-13)		CAGAGCTCTTCCTCATGAAGC	0.647													10	42					0	0	0.010729	0	0
ZNF815	401303	broad.mit.edu	37	7	5879594	5879594	+	RNA	SNP	C	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:5879594C>G	uc010ktb.1	+	4		c.527C>G			ZNF815_uc003spc.2_RNA|ZNF815_uc003spd.2_RNA					Homo sapiens cDNA FLJ38969 fis, clone NT2RI2002359.												0						CACTGTCATTCGGGGACGTGG	0.567													4	4					0	0	0.009096	0	0
C7orf70	84792	broad.mit.edu	37	7	6370581	6370581	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:6370581G>A	uc003spu.2	-	2	673	c.205C>T	c.(205-207)CCG>TCG	p.P69S		NM_001037163	NP_001032240	Q7Z4H9	SIPAR_HUMAN	hypothetical protein LOC84792	69						nucleus					0						GCCCCGCTCGGATCCTTTCTC	0.542													26	33					0	0	0.004656	0	0
RAC1	5879	broad.mit.edu	37	7	6426907	6426907	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:6426907C>T	uc003spx.2	+	2	341	c.100C>T	c.(100-102)CCT>TCT	p.P34S	RAC1_uc003spw.2_Missense_Mutation_p.P34S	NM_006908	NP_008839	P63000	RAC1_HUMAN	ras-related C3 botulinum toxin substrate 1	34	Effector region (Potential).				actin filament polymerization|apoptosis|axon guidance|cell motility|cell-matrix adhesion|induction of apoptosis by extracellular signals|inflammatory response|lamellipodium assembly|localization within membrane|negative regulation of interleukin-23 production|negative regulation of receptor-mediated endocytosis|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of lamellipodium assembly|positive regulation of Rho protein signal transduction|regulation of cell migration|regulation of defense response to virus by virus|regulation of hydrogen peroxide metabolic process|regulation of respiratory burst|ruffle organization|small GTPase mediated signal transduction|T cell costimulation|viral reproduction	cytosol|melanosome|plasma membrane	GTP binding|GTP-dependent protein binding|GTPase activity|thioesterase binding			lung(2)	2		Ovarian(82;0.0776)		UCEC - Uterine corpus endometrioid carcinoma (126;0.104)	Pravastatin(DB00175)|Simvastatin(DB00641)	AGAATATATCCCTACTGTGTA	0.363													22	74					0	0	0.004656	0	0
COL28A1	340267	broad.mit.edu	37	7	7529073	7529073	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:7529073C>T	uc003src.1	-	13	1228	c.1111G>A	c.(1111-1113)GAA>AAA	p.E371K	COL28A1_uc011jxe.1_Missense_Mutation_p.E54K|COL28A1_uc003srd.2_5'UTR	NM_001037763	NP_001032852	Q2UY09	COSA1_HUMAN	collagen, type XXVIII precursor	371					cell adhesion	basement membrane|collagen	serine-type endopeptidase inhibitor activity			skin(3)	3		Ovarian(82;0.0789)		UCEC - Uterine corpus endometrioid carcinoma (126;0.228)		GGTCTTCCTTCTTGGCCTCTT	0.383													25	45					0	0	0.004656	0	0
THSD7A	221981	broad.mit.edu	37	7	11633072	11633072	+	Missense_Mutation	SNP	C	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:11633072C>G	uc003ssf.3	-	3	1332	c.1080G>C	c.(1078-1080)GAG>GAC	p.E360D		NM_015204	NP_056019	Q9UPZ6	THS7A_HUMAN	thrombospondin, type I, domain containing 7A	360	TSP type-1 3.|Extracellular (Potential).					integral to membrane				ovary(3)	3				UCEC - Uterine corpus endometrioid carcinoma (126;0.163)		AAACCTGGCACTCTTTGGTGA	0.507										HNSCC(18;0.044)			42	49					0	0	0.008740	0	0
SCIN	85477	broad.mit.edu	37	7	12666397	12666397	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:12666397G>A	uc003ssn.3	+	8	1380	c.1170G>A	c.(1168-1170)ATG>ATA	p.M390I	SCIN_uc010ktt.2_RNA|SCIN_uc003sso.3_Missense_Mutation_p.M143I	NM_001112706	NP_001106177	Q9Y6U3	ADSV_HUMAN	scinderin isoform 1	390	Ca(2+)-dependent actin binding.				actin filament capping|actin filament severing|actin nucleation|calcium ion-dependent exocytosis|negative regulation of cell proliferation|positive regulation of apoptosis|positive regulation of megakaryocyte differentiation|positive regulation of secretion|regulation of chondrocyte differentiation	cell cortex|cytoskeleton	1-phosphatidylinositol binding|actin filament binding|calcium ion binding|phosphatidylinositol-4,5-bisphosphate binding|phosphatidylserine binding			ovary(2)	2				UCEC - Uterine corpus endometrioid carcinoma (126;0.195)		AGCACAATATGGTGGATGATG	0.368													3	9					0	0	0.004672	0	0
SCIN	85477	broad.mit.edu	37	7	12668822	12668822	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:12668822C>T	uc003ssn.3	+	9	1504	c.1294C>T	c.(1294-1296)CCC>TCC	p.P432S	SCIN_uc010ktt.2_RNA|SCIN_uc003sso.3_Missense_Mutation_p.P185S	NM_001112706	NP_001106177	Q9Y6U3	ADSV_HUMAN	scinderin isoform 1	432	Ca(2+)-dependent actin binding.|Gelsolin-like 4.				actin filament capping|actin filament severing|actin nucleation|calcium ion-dependent exocytosis|negative regulation of cell proliferation|positive regulation of apoptosis|positive regulation of megakaryocyte differentiation|positive regulation of secretion|regulation of chondrocyte differentiation	cell cortex|cytoskeleton	1-phosphatidylinositol binding|actin filament binding|calcium ion binding|phosphatidylinositol-4,5-bisphosphate binding|phosphatidylserine binding			ovary(2)	2				UCEC - Uterine corpus endometrioid carcinoma (126;0.195)		CTACACCTATCCCAGAGGACA	0.413													29	70					0	0	0.010818	0	0
DGKB	1607	broad.mit.edu	37	7	14613992	14613992	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:14613992C>T	uc003ssz.2	-	19	1805	c.1618G>A	c.(1618-1620)GAA>AAA	p.E540K	DGKB_uc011jxt.1_Missense_Mutation_p.E521K|DGKB_uc003sta.2_Missense_Mutation_p.E540K|DGKB_uc011jxu.1_Missense_Mutation_p.E539K	NM_004080	NP_004071	Q9Y6T7	DGKB_HUMAN	diacylglycerol kinase, beta isoform 1	540	DAGKc.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	cytoplasm|plasma membrane	ATP binding|calcium ion binding|diacylglycerol kinase activity|protein binding			lung(5)|ovary(4)|breast(2)|skin(1)	12					Phosphatidylserine(DB00144)	TTCTCACCTTCGTAACCTAGT	0.323													25	57					0	0	0.004656	0	0
PRPS1L1	221823	broad.mit.edu	37	7	18066524	18066524	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:18066524C>T	uc003stz.2	-	1	963	c.882G>A	c.(880-882)ATG>ATA	p.M294I		NM_175886	NP_787082	P21108	PRPS3_HUMAN	phosphoribosyl pyrophosphate synthetase 1-like	294					nucleoside metabolic process|ribonucleoside monophosphate biosynthetic process		ATP binding|kinase activity|magnesium ion binding|protein homodimerization activity|ribose phosphate diphosphokinase activity			ovary(1)	1	Lung NSC(10;0.0385)|all_lung(11;0.0736)					CTGCAAGGATCATGGAGATGT	0.403													52	170					0	0	0.014410	0	0
HDAC9	9734	broad.mit.edu	37	7	18624924	18624924	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:18624924C>T	uc003suh.2	+	2	84	c.43C>T	c.(43-45)CCT>TCT	p.P15S	HDAC9_uc003sue.2_Missense_Mutation_p.P15S|HDAC9_uc011jyd.1_Missense_Mutation_p.P15S|HDAC9_uc003sui.2_Missense_Mutation_p.P15S|HDAC9_uc003suj.2_Missense_Mutation_p.P15S|HDAC9_uc011jya.1_Missense_Mutation_p.P56S|HDAC9_uc003sua.1_Missense_Mutation_p.P34S|HDAC9_uc011jyb.1_Missense_Mutation_p.P15S|HDAC9_uc003sud.1_Missense_Mutation_p.P15S|HDAC9_uc011jyc.1_Missense_Mutation_p.P15S|HDAC9_uc003suf.1_Missense_Mutation_p.P43S|HDAC9_uc010kud.1_Missense_Mutation_p.P15S|HDAC9_uc011jye.1_5'UTR|HDAC9_uc011jyf.1_5'UTR	NM_058176	NP_478056	Q9UKV0	HDAC9_HUMAN	histone deacetylase 9 isoform 1	15					B cell differentiation|cellular response to insulin stimulus|heart development|histone H3 deacetylation|histone H4 deacetylation|inflammatory response|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|peptidyl-lysine deacetylation|positive regulation of cell migration involved in sprouting angiogenesis|regulation of skeletal muscle fiber development|transcription, DNA-dependent	cytoplasm|histone deacetylase complex|histone methyltransferase complex|transcription factor complex	histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|histone deacetylase binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|protein binding|protein kinase C binding|repressing transcription factor binding|transcription corepressor activity			lung(2)|central_nervous_system(2)|kidney(1)	5	all_lung(11;0.187)				Valproic Acid(DB00313)	GTCAGAAGTTCCTGTGGGCCT	0.478													28	147					0	0	0.012213	0	0
TWISTNB	221830	broad.mit.edu	37	7	19739834	19739834	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:19739834G>A	uc003sup.1	-	3	487	c.466C>T	c.(466-468)CCT>TCT	p.P156S		NM_001002926	NP_001002926	Q3B726	RPA43_HUMAN	TWIST neighbor	156						microtubule cytoskeleton|nucleolus	DNA-directed RNA polymerase activity			ovary(1)	1						TCAGGTTTAGGAATGGAGGCA	0.423													11	64					0	0	0.010729	0	0
ITGB8	3696	broad.mit.edu	37	7	20441433	20441433	+	Silent	SNP	A	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:20441433A>G	uc003suu.2	+	10	2076	c.1371A>G	c.(1369-1371)GAA>GAG	p.E457E	ITGB8_uc011jyh.1_Silent_p.E322E	NM_002214	NP_002205	P26012	ITB8_HUMAN	integrin, beta 8 precursor	457	Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|placenta blood vessel development	integrin complex	protein binding|receptor activity			skin(3)	3						GTTTTAATGAAACCGCTAAAA	0.343													28	64					0	0	0.009535	0	0
ABCB5	340273	broad.mit.edu	37	7	20721209	20721209	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:20721209G>A	uc003suw.3	+	6	1000	c.454G>A	c.(454-456)GAT>AAT	p.D152N	ABCB5_uc010kuh.2_Missense_Mutation_p.D597N	NM_178559	NP_848654	Q2M3G0	ABCB5_HUMAN	ATP-binding cassette, sub-family B, member 5	152	ABC transporter 1.|Extracellular (Potential).				regulation of membrane potential	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus	ATP binding|ATPase activity, coupled to transmembrane movement of substances|efflux transmembrane transporter activity			skin(2)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|ovary(1)|pancreas(1)	6						GACCCTAAAGGATGGAATGCT	0.423													8	40					0	0	0.004482	0	0
GPNMB	10457	broad.mit.edu	37	7	23293046	23293046	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:23293046G>A	uc003swc.2	+	2	352	c.191G>A	c.(190-192)CGG>CAG	p.R64Q	GPNMB_uc003swa.2_Missense_Mutation_p.R64Q|GPNMB_uc003swb.2_Missense_Mutation_p.R64Q|GPNMB_uc011jyy.1_Missense_Mutation_p.R64Q|GPNMB_uc011jyz.1_Intron	NM_001005340	NP_001005340	Q14956	GPNMB_HUMAN	glycoprotein (transmembrane) nmb isoform a	64	Cell attachment site (Potential).|Extracellular (Potential).				negative regulation of cell proliferation	melanosome				ovary(3)|breast(2)	5			GBM - Glioblastoma multiforme(13;0.154)			GTGTGGAAGCGGGGAGACATG	0.418													7	36					0	0	0.001984	0	0
STK31	56164	broad.mit.edu	37	7	23825160	23825160	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:23825160G>A	uc003sws.3	+	18	2279	c.2212G>A	c.(2212-2214)GAA>AAA	p.E738K	STK31_uc003swt.3_Missense_Mutation_p.E715K|STK31_uc011jze.1_Missense_Mutation_p.E738K|STK31_uc010kuq.2_Missense_Mutation_p.E715K|STK31_uc003swv.1_5'Flank	NM_031414	NP_113602	Q9BXU1	STK31_HUMAN	serine/threonine kinase 31 isoform a	738	Protein kinase.						ATP binding|nucleic acid binding|protein serine/threonine kinase activity			skin(3)|lung(2)|ovary(2)|stomach(2)	9						GCCCATGAAGGAACTTAGCAG	0.418													20	86					0	0	0.012319	0	0
MPP6	51678	broad.mit.edu	37	7	24663366	24663366	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:24663366G>A	uc003swx.2	+	3	379	c.80G>A	c.(79-81)GGA>GAA	p.G27E	MPP6_uc003swy.2_Missense_Mutation_p.G27E	NM_016447	NP_057531	Q9NZW5	MPP6_HUMAN	membrane protein, palmitoylated 6	27	L27 1.				protein complex assembly		protein binding				0						TTCCTCAAGGGAATTATGGAG	0.348													15	50					0	0	0.006122	0	0
OSBPL3	26031	broad.mit.edu	37	7	24854706	24854706	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:24854706G>A	uc003sxf.2	-	19	2549	c.2144C>T	c.(2143-2145)TCC>TTC	p.S715F	OSBPL3_uc003sxd.2_RNA|OSBPL3_uc003sxe.2_RNA|OSBPL3_uc003sxg.2_Missense_Mutation_p.S679F|OSBPL3_uc003sxh.2_Missense_Mutation_p.S684F|OSBPL3_uc003sxi.2_Missense_Mutation_p.S648F	NM_015550	NP_056365	Q9H4L5	OSBL3_HUMAN	oxysterol-binding protein-like protein 3 isoform	715					lipid transport		lipid binding|protein binding			skin(1)	1						GCAGTAGCAGGAATCATCATG	0.502													73	142					0	0	0.014410	0	0
OSBPL3	26031	broad.mit.edu	37	7	24901383	24901383	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:24901383C>T	uc003sxf.2	-	10	1281	c.876G>A	c.(874-876)CCG>CCA	p.P292P	OSBPL3_uc003sxd.2_RNA|OSBPL3_uc003sxe.2_RNA|OSBPL3_uc003sxg.2_Silent_p.P292P|OSBPL3_uc003sxh.2_Silent_p.P261P|OSBPL3_uc003sxi.2_Silent_p.P261P|OSBPL3_uc003sxj.1_Silent_p.P57P|OSBPL3_uc003sxk.1_Silent_p.P26P	NM_015550	NP_056365	Q9H4L5	OSBL3_HUMAN	oxysterol-binding protein-like protein 3 isoform	292					lipid transport		lipid binding|protein binding			skin(1)	1						AAAAAGGTTTCGGGACCTGAA	0.358													23	31					0	0	0.005443	0	0
HOXA2	3199	broad.mit.edu	37	7	27140492	27140492	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:27140492G>A	uc003syh.2	-	2	1259	c.984C>T	c.(982-984)TTC>TTT	p.F328F		NM_006735	NP_006726	O43364	HXA2_HUMAN	homeobox A2	328						nucleus	sequence-specific DNA binding transcription factor activity			ovary(1)|skin(1)	2						AATCTGTGGAGAAAACGCTAA	0.507													26	44					0	0	0.006320	0	0
HOXA9	3205	broad.mit.edu	37	7	27204563	27204563	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:27204563C>T	uc003syt.2	-	1	587	c.514G>A	c.(514-516)GAA>AAA	p.E172K		NM_152739	NP_689952	P31269	HXA9_HUMAN	homeobox A9	172							protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			lung(1)|central_nervous_system(1)	2						AAGGCGCCTTCGCTGGGTTGT	0.552			T	NUP98|MSI2	AML*								25	44					0	0	0.005443	0	0
HIBADH	11112	broad.mit.edu	37	7	27570934	27570934	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:27570934G>A	uc003szf.2	-	7	924	c.729C>T	c.(727-729)ATC>ATT	p.I243I	HIBADH_uc003szg.2_Silent_p.I194I|HIBADH_uc003szh.2_Silent_p.I142I	NM_152740	NP_689953	P31937	3HIDH_HUMAN	3-hydroxyisobutyrate dehydrogenase precursor	243					branched chain family amino acid catabolic process|pentose-phosphate shunt|valine metabolic process	mitochondrial matrix	3-hydroxyisobutyrate dehydrogenase activity|NAD binding|phosphogluconate dehydrogenase (decarboxylating) activity			ovary(2)	2			GBM - Glioblastoma multiforme(3;0.0368)		NADH(DB00157)	TCATATTTAGGATTTTAGCCA	0.433													161	378					0	0	0.014410	0	0
WIPF3	644150	broad.mit.edu	37	7	29927732	29927732	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:29927732C>T	uc003taj.1	+	5	1148	c.1148C>T	c.(1147-1149)TCA>TTA	p.S383L		NM_001080529	NP_001073998	A6NGB9	WIPF3_HUMAN	WAS/WASL interacting protein family, member 3	383										ovary(1)	1						CCTGCGAGATCACCTACCACA	0.567													9	27					0	0	0.008291	0	0
NOD1	10392	broad.mit.edu	37	7	30492014	30492014	+	Missense_Mutation	SNP	C	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:30492014C>G	uc003tav.2	-	6	1542	c.1019G>C	c.(1018-1020)CGC>CCC	p.R340P	NOD1_uc010kvs.2_3'UTR	NM_006092	NP_006083	Q9Y239	NOD1_HUMAN	nucleotide-binding oligomerization domain	340	NACHT.				activation of MAPK activity|detection of bacterium|induction of apoptosis|inflammatory response|innate immune response|interleukin-8 biosynthetic process|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of dendritic cell antigen processing and presentation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|protein oligomerization|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	basolateral plasma membrane|cytosol	ATP binding|CARD domain binding|caspase activator activity|peptidoglycan binding|protein homodimerization activity			ovary(1)|skin(1)	2						CAGGAACTGGCGCGGGACCTC	0.682													23	59					0	0	0.004656	0	0
GARS	2617	broad.mit.edu	37	7	30642717	30642717	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:30642717C>T	uc003tbm.2	+	5	994	c.637C>T	c.(637-639)CGT>TGT	p.R213C		NM_002047	NP_002038	P41250	SYG_HUMAN	glycyl-tRNA synthetase	213		Substrate.			cell death|diadenosine tetraphosphate biosynthetic process|glycyl-tRNA aminoacylation	cytosol|mitochondrial matrix|soluble fraction	ATP binding|glycine-tRNA ligase activity|protein dimerization activity			ovary(1)	1					Glycine(DB00145)	AGAATGTTTTCGTGCTGACCA	0.353													25	42					0	0	0.004656	0	0
INMT	11185	broad.mit.edu	37	7	30793422	30793422	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:30793422C>T	uc003tbs.1	+	2	246	c.230C>T	c.(229-231)TCC>TTC	p.S77F	FAM188B_uc010kwe.2_5'UTR|INMT_uc010kwc.1_RNA|INMT_uc010kwd.1_Missense_Mutation_p.S76F	NM_006774	NP_006765	O95050	INMT_HUMAN	indolethylamine N-methyltransferase	77						cytoplasm	amine N-methyltransferase activity				0						GCCTGTGATTCCTTCCAAGAC	0.567													106	178					0	0	0.014410	0	0
CCDC129	223075	broad.mit.edu	37	7	31683179	31683179	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:31683179G>A	uc003tcj.1	+	11	3188	c.2195G>A	c.(2194-2196)GGA>GAA	p.G732E	CCDC129_uc011kad.1_Missense_Mutation_p.G742E|CCDC129_uc003tci.1_Missense_Mutation_p.G583E|CCDC129_uc011kae.1_Missense_Mutation_p.G758E|CCDC129_uc003tck.1_Missense_Mutation_p.G640E	NM_194300	NP_919276	Q6ZRS4	CC129_HUMAN	coiled-coil domain containing 129	732											0						GGTCCCAGAGGAACATCTTTA	0.507													16	80					0	0	0.006122	0	0
PDE1C	5137	broad.mit.edu	37	7	31855719	31855719	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:31855719C>T	uc003tcm.1	-	15	2101	c.1632G>A	c.(1630-1632)GAG>GAA	p.E544E	PDE1C_uc003tcn.1_Silent_p.E544E|PDE1C_uc003tco.1_Silent_p.E604E|PDE1C_uc003tcr.2_Silent_p.E544E|PDE1C_uc003tcs.2_Silent_p.E544E	NM_005020	NP_005011	Q14123	PDE1C_HUMAN	phosphodiesterase 1C	544					activation of phospholipase C activity|nerve growth factor receptor signaling pathway	cytosol	calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(3)|central_nervous_system(1)	4			GBM - Glioblastoma multiforme(11;0.216)			TTTGCTGCTCCTCTGCGGCCA	0.493													67	98					0	0	0.014410	0	0
PDE1C	5137	broad.mit.edu	37	7	31887604	31887604	+	Missense_Mutation	SNP	T	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:31887604T>G	uc003tcm.1	-	9	1427	c.958A>C	c.(958-960)AAC>CAC	p.N320H	PDE1C_uc003tcn.1_Missense_Mutation_p.N320H|PDE1C_uc003tco.1_Missense_Mutation_p.N380H|PDE1C_uc003tcr.2_Missense_Mutation_p.N320H|PDE1C_uc003tcs.2_Missense_Mutation_p.N320H	NM_005020	NP_005011	Q14123	PDE1C_HUMAN	phosphodiesterase 1C	320	Catalytic (By similarity).				activation of phospholipase C activity|nerve growth factor receptor signaling pathway	cytosol	calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(3)|central_nervous_system(1)	4			GBM - Glioblastoma multiforme(11;0.216)			TTTGAGAGGTTAATCAAAATA	0.398													6	54					0	0	0.001984	0	0
DPY19L1	23333	broad.mit.edu	37	7	34982235	34982235	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:34982235G>A	uc003tem.3	-	17	1487	c.1342C>T	c.(1342-1344)CAT>TAT	p.H448Y	DPY19L1_uc003ten.1_5'Flank|MIR548N_hsa-mir-548n|MI0006399_5'Flank	NM_015283	NP_056098	Q2PZI1	D19L1_HUMAN	dpy-19-like 1	448						integral to membrane					0						ACCTCTCCATGATCAAACTGG	0.318													10	29					0	0	0.010729	0	0
DPY19L2P1	554236	broad.mit.edu	37	7	35130016	35130016	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:35130016G>A	uc003teq.1	-	21	2276	c.1169C>T	c.(1168-1170)TCT>TTT	p.S390F	DPY19L2P1_uc003tep.1_RNA|DPY19L2P1_uc010kwz.1_RNA					RecName: Full=Protein dpy-19 homolog 2-like 2; AltName: Full=Dpy-19-like protein 2 pseudogene 2;												0						TTCTTTGGCAGATTTTCGACT	0.289													33	67					0	0	0.003271	0	0
TXNDC3	51314	broad.mit.edu	37	7	37889893	37889893	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:37889893C>T	uc003tfn.2	+	3	397	c.25C>T	c.(25-27)CAG>TAG	p.Q9*		NM_016616	NP_057700	Q8N427	TXND3_HUMAN	thioredoxin domain containing 3	9	Thioredoxin.				cell differentiation|cell redox homeostasis|CTP biosynthetic process|GTP biosynthetic process|multicellular organismal development|spermatogenesis|UTP biosynthetic process	cytoplasm|microtubule cytoskeleton	ATP binding|nucleoside diphosphate kinase activity			ovary(1)|breast(1)|central_nervous_system(1)	3						ACGAGAAGTCCAGTTACAGGT	0.333									Kartagener_syndrome				59	90					0	0	0.014410	0	0
TXNDC3	51314	broad.mit.edu	37	7	37916527	37916527	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:37916527C>T	uc003tfn.2	+	12	1284	c.912C>T	c.(910-912)TTC>TTT	p.F304F		NM_016616	NP_057700	Q8N427	TXND3_HUMAN	thioredoxin domain containing 3	304					cell differentiation|cell redox homeostasis|CTP biosynthetic process|GTP biosynthetic process|multicellular organismal development|spermatogenesis|UTP biosynthetic process	cytoplasm|microtubule cytoskeleton	ATP binding|nucleoside diphosphate kinase activity			ovary(1)|breast(1)|central_nervous_system(1)	3						ATGCTTTCTTCCCCGATTTTA	0.358									Kartagener_syndrome				10	22					0	0	0.006214	0	0
AMPH	273	broad.mit.edu	37	7	38500990	38500990	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:38500990G>A	uc003tgu.2	-	11	979	c.910C>T	c.(910-912)CCA>TCA	p.P304S	AMPH_uc003tgv.2_Missense_Mutation_p.P304S|AMPH_uc003tgt.2_Missense_Mutation_p.P57S	NM_001635	NP_001626	P49418	AMPH_HUMAN	amphiphysin isoform 1	304					endocytosis|synaptic transmission	actin cytoskeleton|cell junction|synaptic vesicle membrane				ovary(3)|liver(1)|skin(1)	5						GGTAGAGGTGGGACAGGAGGC	0.448													42	84					0	0	0.014410	0	0
VPS41	27072	broad.mit.edu	37	7	38768147	38768147	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:38768147G>A	uc003tgy.2	-	27	2425	c.2399C>T	c.(2398-2400)CCA>CTA	p.P800L	VPS41_uc003tgz.2_Missense_Mutation_p.P775L|VPS41_uc010kxn.2_Missense_Mutation_p.P711L|VPS41_uc003tgx.2_RNA	NM_014396	NP_055211	P49754	VPS41_HUMAN	vacuolar protein sorting 41 isoform 1	800	RING-type; atypical.				Golgi vesicle transport|intracellular protein transport|vesicle-mediated transport	cytosol|Golgi-associated vesicle|HOPS complex|membrane fraction	zinc ion binding			skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	4						CTTACCTGATGGAAGAATAGG	0.373													21	52					0	0	0.003954	0	0
POU6F2	11281	broad.mit.edu	37	7	39503872	39503873	+	Missense_Mutation	DNP	CT	TC	TC			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:39503872_39503873CT>TC	uc003thb.1	+	10	1705_1706	c.1663_1664CT>TC	c.(1663-1665)CTT>TCT	p.L555S		NM_007252	NP_009183	P78424	PO6F2_HUMAN	POU class 6 homeobox 2 isoform 1	555	POU-specific.				central nervous system development|ganglion mother cell fate determination|transcription from RNA polymerase II promoter|visual perception		sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1						GAACCCTGGCCTTTTGTATCCT	0.55													31	79					0	0	0.004672	0	0
C7orf36	57002	broad.mit.edu	37	7	39612009	39612009	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:39612009C>T	uc003thc.3	+	3	394	c.385C>T	c.(385-387)CAT>TAT	p.H129Y		NM_020192	NP_064577	Q9NRH1	CG036_HUMAN	hypothetical protein LOC57002	129											0						TCCACCGTCCCATGTTGTAGA	0.378													39	55					0	0	0.007835	0	0
CDK13	8621	broad.mit.edu	37	7	40037178	40037178	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:40037178C>T	uc003thh.3	+	3	2239	c.1957C>T	c.(1957-1959)CCT>TCT	p.P653S	CDK13_uc003thi.3_Missense_Mutation_p.P653S|CDK13_uc011kbf.1_Missense_Mutation_p.P39S	NM_003718	NP_003709	Q14004	CDK13_HUMAN	cell division cycle 2-like 5 isoform 1	653					alternative nuclear mRNA splicing, via spliceosome|hemopoiesis|interspecies interaction between organisms|phosphorylation of RNA polymerase II C-terminal domain|positive regulation of cell proliferation|regulation of mitosis	nuclear cyclin-dependent protein kinase holoenzyme complex|nuclear speck	ATP binding|cyclin-dependent protein kinase activity|protein binding|RNA polymerase II carboxy-terminal domain kinase activity			lung(2)|skin(2)|ovary(1)	5						ACCGCTGCCCCCTGAGCTACC	0.398													57	89					0	0	0.014410	0	0
INHBA	3624	broad.mit.edu	37	7	41729281	41729281	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:41729281C>T	uc003thq.2	-	2	1483	c.1248G>A	c.(1246-1248)CAG>CAA	p.Q416Q	INHBA_uc003thr.2_Silent_p.Q416Q	NM_002192	NP_002183	P08476	INHBA_HUMAN	inhibin beta A precursor	416					cell cycle arrest|cell surface receptor linked signaling pathway|defense response|erythrocyte differentiation|eyelid development in camera-type eye|G1/S transition of mitotic cell cycle|growth|hair follicle development|hemoglobin biosynthetic process|hemopoietic progenitor cell differentiation|induction of apoptosis|male gonad development|negative regulation of B cell differentiation|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of follicle-stimulating hormone secretion|negative regulation of interferon-gamma biosynthetic process|negative regulation of macrophage differentiation|negative regulation of phosphorylation|nervous system development|odontogenesis|ovarian follicle development|palate development|positive regulation of erythrocyte differentiation|positive regulation of follicle-stimulating hormone secretion|positive regulation of ovulation|positive regulation of transcription from RNA polymerase II promoter|progesterone secretion|regulation of activin receptor signaling pathway	activin A complex|inhibin A complex	cytokine activity|follistatin binding|growth factor activity|hormone activity|identical protein binding|signal transducer activity			lung(5)|ovary(1)	6						CGATCATGTTCTGAATGTCCT	0.483										TSP Lung(11;0.080)			32	41					0	0	0.005524	0	0
HECW1	23072	broad.mit.edu	37	7	43484268	43484268	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:43484268G>A	uc003tid.1	+	11	2102	c.1497G>A	c.(1495-1497)AGG>AGA	p.R499R	HECW1_uc011kbi.1_Silent_p.R499R	NM_015052	NP_055867	Q76N89	HECW1_HUMAN	NEDD4-like ubiquitin-protein ligase 1	499	Glu-rich.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	ubiquitin-protein ligase activity			ovary(8)|lung(6)|breast(4)|skin(4)|pancreas(1)	23						GGGCTGGAAGggaagaagagg	0.527													3	6					0	0	0.004672	0	0
C7orf65	401335	broad.mit.edu	37	7	47694908	47694908	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:47694908G>A	uc010kyp.1	+	1	67	c.32G>A	c.(31-33)GGA>GAA	p.G11E		NM_001123065	NP_001116537	Q6ZTY9	CG065_HUMAN	hypothetical protein LOC401335	11											0						TCAACAGAAGGAAGACGGCTC	0.428													11	25					0	0	0.013537	0	0
PKD1L1	168507	broad.mit.edu	37	7	47879094	47879094	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:47879094G>A	uc003tny.1	-	36	5719	c.5719C>T	c.(5719-5721)CGC>TGC	p.R1907C		NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	1907	PLAT.|Cytoplasmic (Potential).				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						CGCTCCACGCGACCATCATGC	0.657													4	27					0	0	0.001168	0	0
PKD1L1	168507	broad.mit.edu	37	7	47930266	47930266	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:47930266G>A	uc003tny.1	-	16	2549	c.2549C>T	c.(2548-2550)TCC>TTC	p.S850F		NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	850	Extracellular (Potential).|REJ.				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						TGCCTCAAAGGAAACAGTGGG	0.582													10	39					0	0	0.006214	0	0
ABCA13	154664	broad.mit.edu	37	7	48273745	48273745	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:48273745G>A	uc003toq.2	+	8	919	c.894G>A	c.(892-894)AAG>AAA	p.K298K	ABCA13_uc010kyr.2_5'UTR	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	298					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						CTGAACTGAAGGAGGTACACA	0.527													49	50					0	0	0.014410	0	0
ABCA13	154664	broad.mit.edu	37	7	48317803	48317803	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:48317803C>T	uc003toq.2	+	18	7037	c.7012C>T	c.(7012-7014)CAC>TAC	p.H2338Y		NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	2338					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						GACTATATATCACCTAATGAA	0.294													5	18					0	0	0.000602	0	0
CDC14C	168448	broad.mit.edu	37	7	48964344	48964344	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:48964344C>T	uc010kyv.1	+	1	188	c.76C>T	c.(76-78)CTT>TTT	p.L26F		NR_003595				SubName: Full=Putative uncharacterized protein MGC26484;												0						CACCGATCGCCTTCGTTTTGC	0.517													13	28					0	0	0.004007	0	0
DDC	1644	broad.mit.edu	37	7	50605602	50605603	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:50605602_50605603CC>TT	uc003tpf.3	-	4	476_477	c.390_391GG>AA	c.(388-393)AAGGCA>AAAACA	p.A131T	DDC_uc010kza.2_Intron|DDC_uc003tpg.3_Missense_Mutation_p.A131T	NM_000790	NP_000781	P20711	DDC_HUMAN	dopa decarboxylase (aromatic L-amino acid	131	2.|2 X approximate tandem repeats.				cellular amino acid metabolic process|hormone biosynthetic process|neurotransmitter secretion	cytosol	aromatic-L-amino-acid decarboxylase activity|protein binding|pyridoxal phosphate binding			ovary(2)	2	Glioma(55;0.08)|all_neural(89;0.245)				Amantadine(DB00915)|Carbidopa(DB00190)|Flupenthixol(DB00875)|L-Tryptophan(DB00150)|Levodopa(DB01235)|Pimozide(DB01100)|Pyridoxal Phosphate(DB00114)|Remoxipride(DB00409)	TTCAAAAATGCCTTTGGTAGTT	0.559													14	61					0	0	0.004672	0	0
COBL	23242	broad.mit.edu	37	7	51094344	51094344	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:51094344C>T	uc003tpr.3	-	11	3588	c.3403G>A	c.(3403-3405)GAG>AAG	p.E1135K	COBL_uc003tps.2_Missense_Mutation_p.E1192K|COBL_uc011kcl.1_Missense_Mutation_p.E1135K|COBL_uc003tpp.3_Missense_Mutation_p.E921K|COBL_uc003tpq.3_Missense_Mutation_p.E1076K|COBL_uc003tpo.3_Missense_Mutation_p.E677K	NM_015198	NP_056013	O75128	COBL_HUMAN	cordon-bleu homolog	1135										skin(3)|ovary(2)	5	Glioma(55;0.08)					GGCCTGCCCTCCCCGGTGTGT	0.547													47	77					0	0	0.014410	0	0
POM121L12	285877	broad.mit.edu	37	7	53103598	53103598	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:53103598C>T	uc003tpz.2	+	1	250	c.234C>T	c.(232-234)ATC>ATT	p.I78I		NM_182595	NP_872401	Q8N7R1	P1L12_HUMAN	POM121 membrane glycoprotein-like 12	78											0						CCCACCTCATCGAGGTGCGGC	0.716													15	30					0	0	0.006122	0	0
POM121L12	285877	broad.mit.edu	37	7	53103609	53103609	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:53103609C>T	uc003tpz.2	+	1	261	c.245C>T	c.(244-246)CCC>CTC	p.P82L		NM_182595	NP_872401	Q8N7R1	P1L12_HUMAN	POM121 membrane glycoprotein-like 12	82											0						GAGGTGCGGCCCACCCAGGAC	0.711													14	27					0	0	0.004007	0	0
POM121L12	285877	broad.mit.edu	37	7	53103787	53103787	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:53103787C>T	uc003tpz.2	+	1	439	c.423C>T	c.(421-423)ATC>ATT	p.I141I		NM_182595	NP_872401	Q8N7R1	P1L12_HUMAN	POM121 membrane glycoprotein-like 12	141											0						CCATCGGGATCGCGCCCCCTG	0.582													10	30					0	0	0.008291	0	0
EGFR	1956	broad.mit.edu	37	7	55210029	55210029	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:55210029C>T	uc003tqk.2	+	2	385	c.139C>T	c.(139-141)CAT>TAT	p.H47Y	EGFR_uc003tqh.2_Missense_Mutation_p.H47Y|EGFR_uc003tqi.2_Missense_Mutation_p.H47Y|EGFR_uc003tqj.2_Missense_Mutation_p.H47Y|EGFR_uc010kzg.1_Missense_Mutation_p.H47Y|EGFR_uc011kco.1_5'UTR	NM_005228	NP_005219	P00533	EGFR_HUMAN	epidermal growth factor receptor isoform a	47	Extracellular (Potential).				activation of phospholipase A2 activity by calcium-mediated signaling|activation of phospholipase C activity|axon guidance|cell proliferation|cell-cell adhesion|negative regulation of apoptosis|negative regulation of epidermal growth factor receptor signaling pathway|ossification|positive regulation of catenin import into nucleus|positive regulation of cell migration|positive regulation of cyclin-dependent protein kinase activity involved in G1/S|positive regulation of epithelial cell proliferation|positive regulation of MAP kinase activity|positive regulation of nitric oxide biosynthetic process|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|protein autophosphorylation|protein insertion into membrane|regulation of nitric-oxide synthase activity|regulation of peptidyl-tyrosine phosphorylation|response to stress|response to UV-A	basolateral plasma membrane|endoplasmic reticulum membrane|endosome|extracellular space|Golgi membrane|integral to membrane|nuclear membrane|Shc-EGFR complex	actin filament binding|ATP binding|double-stranded DNA binding|epidermal growth factor receptor activity|identical protein binding|MAP/ERK kinase kinase activity|protein heterodimerization activity|protein phosphatase binding|receptor signaling protein tyrosine kinase activity	p.V30_R297>G(5)|p.747_752>S(1)		lung(9213)|central_nervous_system(103)|stomach(41)|upper_aerodigestive_tract(39)|prostate(32)|ovary(31)|thyroid(24)|breast(11)|peritoneum(9)|oesophagus(9)|salivary_gland(9)|large_intestine(8)|kidney(8)|urinary_tract(6)|skin(5)|adrenal_gland(5)|soft_tissue(4)|bone(3)|NS(2)|pancreas(2)|haematopoietic_and_lymphoid_tissue(2)|thymus(2)|liver(2)|eye(1)	9571	all_cancers(1;1.57e-46)|all_epithelial(1;5.62e-37)|Lung NSC(1;9.29e-25)|all_lung(1;4.39e-23)|Esophageal squamous(2;7.55e-08)|Breast(14;0.0318)		GBM - Glioblastoma multiforme(1;0)|all cancers(1;2.19e-314)|Lung(13;4.65e-05)|LUSC - Lung squamous cell carcinoma(13;0.000168)|STAD - Stomach adenocarcinoma(5;0.00164)|Epithelial(13;0.0607)		Cetuximab(DB00002)|Erlotinib(DB00530)|Gefitinib(DB00317)|Lapatinib(DB01259)|Lidocaine(DB00281)|Panitumumab(DB01269)|Trastuzumab(DB00072)	TTTTGAAGATCATTTTCTCAG	0.398		8	A|O|Mis		glioma|NSCLC	NSCLC			Lung_Cancer_Familial_Clustering_of	TCGA GBM(3;<1E-08)|TSP Lung(4;<1E-08)			16	85					0	0	0.004007	0	0
EGFR	1956	broad.mit.edu	37	7	55259426	55259426	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:55259426G>A	uc003tqk.2	+	21	2730	c.2484G>A	c.(2482-2484)TTG>TTA	p.L828L	EGFR_uc010kzg.1_Silent_p.L783L|EGFR_uc011kco.1_Silent_p.L775L|uc003tqo.2_5'Flank	NM_005228	NP_005219	P00533	EGFR_HUMAN	epidermal growth factor receptor isoform a	828	Cytoplasmic (Potential).|Protein kinase.				activation of phospholipase A2 activity by calcium-mediated signaling|activation of phospholipase C activity|axon guidance|cell proliferation|cell-cell adhesion|negative regulation of apoptosis|negative regulation of epidermal growth factor receptor signaling pathway|ossification|positive regulation of catenin import into nucleus|positive regulation of cell migration|positive regulation of cyclin-dependent protein kinase activity involved in G1/S|positive regulation of epithelial cell proliferation|positive regulation of MAP kinase activity|positive regulation of nitric oxide biosynthetic process|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|protein autophosphorylation|protein insertion into membrane|regulation of nitric-oxide synthase activity|regulation of peptidyl-tyrosine phosphorylation|response to stress|response to UV-A	basolateral plasma membrane|endoplasmic reticulum membrane|endosome|extracellular space|Golgi membrane|integral to membrane|nuclear membrane|Shc-EGFR complex	actin filament binding|ATP binding|double-stranded DNA binding|epidermal growth factor receptor activity|identical protein binding|MAP/ERK kinase kinase activity|protein heterodimerization activity|protein phosphatase binding|receptor signaling protein tyrosine kinase activity	p.L828M(1)		lung(9213)|central_nervous_system(103)|stomach(41)|upper_aerodigestive_tract(39)|prostate(32)|ovary(31)|thyroid(24)|breast(11)|peritoneum(9)|oesophagus(9)|salivary_gland(9)|large_intestine(8)|kidney(8)|urinary_tract(6)|skin(5)|adrenal_gland(5)|soft_tissue(4)|bone(3)|NS(2)|pancreas(2)|haematopoietic_and_lymphoid_tissue(2)|thymus(2)|liver(2)|eye(1)	9571	all_cancers(1;1.57e-46)|all_epithelial(1;5.62e-37)|Lung NSC(1;9.29e-25)|all_lung(1;4.39e-23)|Esophageal squamous(2;7.55e-08)|Breast(14;0.0318)		GBM - Glioblastoma multiforme(1;0)|all cancers(1;2.19e-314)|Lung(13;4.65e-05)|LUSC - Lung squamous cell carcinoma(13;0.000168)|STAD - Stomach adenocarcinoma(5;0.00164)|Epithelial(13;0.0607)		Cetuximab(DB00002)|Erlotinib(DB00530)|Gefitinib(DB00317)|Lapatinib(DB01259)|Lidocaine(DB00281)|Panitumumab(DB01269)|Trastuzumab(DB00072)	TGAACTACTTGGAGGACCGTC	0.542		8	A|O|Mis		glioma|NSCLC	NSCLC			Lung_Cancer_Familial_Clustering_of	TCGA GBM(3;<1E-08)|TSP Lung(4;<1E-08)			14	60					0	0	0.004007	0	0
EGFR	1956	broad.mit.edu	37	7	55266472	55266472	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:55266472G>A	uc003tqk.2	+	23	3010	c.2764G>A	c.(2764-2766)GAG>AAG	p.E922K	EGFR_uc010kzg.1_Missense_Mutation_p.E877K|EGFR_uc011kco.1_Missense_Mutation_p.E869K	NM_005228	NP_005219	P00533	EGFR_HUMAN	epidermal growth factor receptor isoform a	922	Cytoplasmic (Potential).|Protein kinase.				activation of phospholipase A2 activity by calcium-mediated signaling|activation of phospholipase C activity|axon guidance|cell proliferation|cell-cell adhesion|negative regulation of apoptosis|negative regulation of epidermal growth factor receptor signaling pathway|ossification|positive regulation of catenin import into nucleus|positive regulation of cell migration|positive regulation of cyclin-dependent protein kinase activity involved in G1/S|positive regulation of epithelial cell proliferation|positive regulation of MAP kinase activity|positive regulation of nitric oxide biosynthetic process|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|protein autophosphorylation|protein insertion into membrane|regulation of nitric-oxide synthase activity|regulation of peptidyl-tyrosine phosphorylation|response to stress|response to UV-A	basolateral plasma membrane|endoplasmic reticulum membrane|endosome|extracellular space|Golgi membrane|integral to membrane|nuclear membrane|Shc-EGFR complex	actin filament binding|ATP binding|double-stranded DNA binding|epidermal growth factor receptor activity|identical protein binding|MAP/ERK kinase kinase activity|protein heterodimerization activity|protein phosphatase binding|receptor signaling protein tyrosine kinase activity			lung(9213)|central_nervous_system(103)|stomach(41)|upper_aerodigestive_tract(39)|prostate(32)|ovary(31)|thyroid(24)|breast(11)|peritoneum(9)|oesophagus(9)|salivary_gland(9)|large_intestine(8)|kidney(8)|urinary_tract(6)|skin(5)|adrenal_gland(5)|soft_tissue(4)|bone(3)|NS(2)|pancreas(2)|haematopoietic_and_lymphoid_tissue(2)|thymus(2)|liver(2)|eye(1)	9571	all_cancers(1;1.57e-46)|all_epithelial(1;5.62e-37)|Lung NSC(1;9.29e-25)|all_lung(1;4.39e-23)|Esophageal squamous(2;7.55e-08)|Breast(14;0.0318)		GBM - Glioblastoma multiforme(1;0)|all cancers(1;2.19e-314)|Lung(13;4.65e-05)|LUSC - Lung squamous cell carcinoma(13;0.000168)|STAD - Stomach adenocarcinoma(5;0.00164)|Epithelial(13;0.0607)		Cetuximab(DB00002)|Erlotinib(DB00530)|Gefitinib(DB00317)|Lapatinib(DB01259)|Lidocaine(DB00281)|Panitumumab(DB01269)|Trastuzumab(DB00072)	CCCTGCCAGCGAGATCTCCTC	0.517		8	A|O|Mis		glioma|NSCLC	NSCLC			Lung_Cancer_Familial_Clustering_of	TCGA GBM(3;<1E-08)|TSP Lung(4;<1E-08)			27	73					0	0	0.008361	0	0
LOC442308	442308	broad.mit.edu	37	7	55714164	55714165	+	RNA	DNP	CC	TT	TT			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:55714164_55714165CC>TT	uc010kzj.2	+	1		c.853_854CC>TT				NR_003598				Homo sapiens similar to tubulin, beta 5 (LOC442308), non-coding RNA.												0						CAAGCTCTCACCGTGCCCCAAC	0.545													7	13					0	0	0.004672	0	0
FKBP9L	360132	broad.mit.edu	37	7	55752937	55752938	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:55752937_55752938CC>TT	uc010kzl.2	-	5	612_613	c.512_513GG>AA	c.(511-513)TGG>TAA	p.W171*	FKBP9L_uc010kzk.2_Nonsense_Mutation_p.W60*|FKBP9L_uc003tqt.2_Nonsense_Mutation_p.W60*|FKBP9L_uc011kcs.1_Nonsense_Mutation_p.W60*	NR_003949				SubName: Full=cDNA, FLJ79189, highly similar to FK506-binding protein 9 (EC 5.2.1.8);												0						CCTCACCATTCCATATGAACAT	0.52													4	22					0	0	0.004672	0	0
SEPT14	346288	broad.mit.edu	37	7	55863612	55863612	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:55863612C>T	uc003tqz.2	-	10	1410	c.1293G>A	c.(1291-1293)AAG>AAA	p.K431K		NM_207366	NP_997249	Q6ZU15	SEP14_HUMAN	septin 14	431					cell cycle|cell division	septin complex	GTP binding|protein binding				0	Breast(14;0.214)		Lung(13;0.00024)|LUSC - Lung squamous cell carcinoma(13;0.00099)			ACTATTATTTCTTACGATGTT	0.318													23	49					0	0	0.002780	0	0
PHKG1	5260	broad.mit.edu	37	7	56149359	56149359	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:56149359C>T	uc003trz.1	-	9	1077	c.882G>A	c.(880-882)GAG>GAA	p.E294E	PSPH_uc003trj.2_Intron|PHKG1_uc003try.1_Silent_p.E188E|PHKG1_uc011kdb.1_Silent_p.E326E|PHKG1_uc011kdc.1_Silent_p.E285E|PHKG1_uc011kdd.1_Silent_p.E240E	NM_006213	NP_006204	Q16816	PHKG1_HUMAN	phosphorylase kinase gamma subunit 1	294					glucose metabolic process|glycogen biosynthetic process|glycogen catabolic process	cytosol	ATP binding|calmodulin binding|phosphorylase kinase activity			large_intestine(1)	1	Breast(14;0.214)		Lung(13;0.00024)|LUSC - Lung squamous cell carcinoma(13;0.00099)			GCCGCACTTCCTCCACCAAGT	0.602													8	44					0	0	0.003080	0	0
ZNF727	442319	broad.mit.edu	37	7	63529389	63529389	+	Missense_Mutation	SNP	T	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:63529389T>G	uc011kdm.1	+	2	303	c.124T>G	c.(124-126)TCC>GCC	p.S42A		NM_001159522	NP_001152994	A8MUV8	ZN727_HUMAN	zinc finger protein 727	42	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AAACCTGTTCTCCTTGGGTGA	0.378													2	2					0	0	0.004672	0	0
ZNF679	168417	broad.mit.edu	37	7	63726795	63726795	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:63726795C>T	uc003tsx.2	+	5	1053	c.784C>T	c.(784-786)CAT>TAT	p.H262Y		NM_153363	NP_699194	Q8IYX0	ZN679_HUMAN	zinc finger protein 679	262	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						TAGGAGAATTCATACTGGAGA	0.418													3	6					0	0	0.009096	0	0
AUTS2	26053	broad.mit.edu	37	7	70231204	70231204	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:70231204C>T	uc003tvw.3	+	9	2316	c.1573C>T	c.(1573-1575)CAT>TAT	p.H525Y	AUTS2_uc003tvx.3_Missense_Mutation_p.H525Y|AUTS2_uc011keg.1_5'Flank	NM_015570	NP_056385	Q8WXX7	AUTS2_HUMAN	autism susceptibility candidate 2 isoform 1	525	His-rich.									ovary(2)|central_nervous_system(1)	3		all_cancers(73;0.0264)|all_epithelial(88;0.0198)|Lung NSC(55;0.0599)|all_lung(88;0.093)		LUSC - Lung squamous cell carcinoma(90;0.082)|Lung(90;0.186)		GACCGAGTTCCATcagcacca	0.473													21	39					0	0	0.010504	0	0
WBSCR17	64409	broad.mit.edu	37	7	70853359	70853359	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:70853359C>T	uc003tvy.2	+	3	561	c.561C>T	c.(559-561)ATC>ATT	p.I187I	WBSCR17_uc003tvz.2_5'UTR	NM_022479	NP_071924	Q6IS24	GLTL3_HUMAN	UDP-GalNAc:polypeptide	187	Catalytic subdomain A.|Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			skin(3)|upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)|central_nervous_system(1)	7		all_cancers(73;0.2)|Lung NSC(55;0.094)|all_lung(88;0.125)				TGAAGGAAATCATTCTGGTGG	0.542													4	25					0	0	0.009096	0	0
SPDYE7P	441251	broad.mit.edu	37	7	72334870	72334870	+	RNA	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:72334870C>T	uc010lal.1	-	1		c.4786G>A				NR_003666				Homo sapiens speedy homolog E7 (Xenopus laevis), pseudogene (SPDYE7P), non-coding RNA.												0						TCGTCGTCCTCCTCCATGTCA	0.567													8	30					0	0	0.003330	0	0
GTF2IRD2P1	401375	broad.mit.edu	37	7	72658536	72658536	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:72658536C>T	uc003txs.1	-	13	1376	c.448G>A	c.(448-450)GAA>AAA	p.E150K	FKBP6_uc003twz.2_Intron	NR_002164				RecName: Full=General transcription factor II-I repeat domain-containing protein 2B; AltName: Full=GTF2I repeat domain-containing protein 2B; AltName: Full=Transcription factor GTF2IRD2-beta;												0						ctgattttttcacgtaacttc	0													8	31					0	0	0.003163	0	0
FKBP6	8468	broad.mit.edu	37	7	72743446	72743446	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:72743446G>A	uc003tya.2	+	3	391	c.259G>A	c.(259-261)GGA>AGA	p.G87R	FKBP6_uc003twz.2_Intron|FKBP6_uc011kew.1_Missense_Mutation_p.G82R|FKBP6_uc010lbe.1_RNA|TRIM50_uc003txy.1_5'Flank|TRIM50_uc003txz.1_5'Flank	NM_003602	NP_003593	O75344	FKBP6_HUMAN	FK506 binding protein 6 isoform a	87	PPIase FKBP-type.				protein folding	membrane	FK506 binding|peptidyl-prolyl cis-trans isomerase activity				0		Lung NSC(55;0.0908)|all_lung(88;0.198)				AATGAAACTTGGAGAGGGTAG	0.483													35	53					0	0	0.012213	0	0
WBSCR27	155368	broad.mit.edu	37	7	73249193	73249193	+	Silent	SNP	G	C	C	rs141574320	byFrequency	TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:73249193G>C	uc003tzj.2	-	6	658	c.618C>G	c.(616-618)ACC>ACG	p.T206T	RFC2_uc011kfa.1_Intron	NM_152559	NP_689772	Q8N6F8	WBS27_HUMAN	Williams-Beuren syndrome chromosome region 27	206										central_nervous_system(1)	1		Lung NSC(55;0.159)				AGCTCCCAGCGGTCCACAGGC	0.622													11	41					0	0	0.001855	0	0
WBSCR28	135886	broad.mit.edu	37	7	73279939	73279939	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:73279939C>T	uc003tzk.2	+	3	570	c.534C>T	c.(532-534)CTC>CTT	p.L178L	RFC2_uc011kfa.1_Intron|WBSCR28_uc003tzl.2_Silent_p.L77L	NM_182504	NP_872310	Q6UE05	WBS28_HUMAN	hypothetical protein LOC135886	178						integral to membrane				breast(1)	1		Lung NSC(55;0.159)				TAAGGAAGCTCCTGGTACAGC	0.582													67	98					0	0	0.014410	0	0
LIMK1	3984	broad.mit.edu	37	7	73513401	73513401	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:73513401C>T	uc003uaa.1	+	5	606	c.441C>T	c.(439-441)ATC>ATT	p.I147I	RFC2_uc011kfa.1_Intron|LIMK1_uc010lbl.1_RNA|LIMK1_uc003uab.2_Silent_p.I113I|LIMK1_uc003uac.1_5'UTR	NM_002314	NP_002305	P53667	LIMK1_HUMAN	LIM domain kinase 1	147					actin cytoskeleton organization|axon guidance|negative regulation of ubiquitin-protein ligase activity|positive regulation of actin filament bundle assembly|positive regulation of axon extension|Rho protein signal transduction	cytosol|growth cone|nucleus	ATP binding|heat shock protein binding|protein serine/threonine kinase activity|zinc ion binding			stomach(2)|ovary(1)	3		Lung NSC(55;0.137)				CCCCCGTCATCGAGCAGATCC	0.597													31	109					0	0	0.010818	0	0
CLIP2	7461	broad.mit.edu	37	7	73770739	73770739	+	Splice_Site	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:73770739G>A	uc003uam.2	+	5	1131	c.804_splice	c.e5-1	p.R268_splice	CLIP2_uc003uan.2_Splice_Site_p.R268_splice	NM_003388	NP_003379	Q9UDT6	CLIP2_HUMAN	CAP-GLY domain containing linker protein 2							microtubule associated complex				skin(3)	3						TGCTTCCACAGGTACTTCCAG	0.587													30	78					0	0	0.007291	0	0
GTF2IRD2	84163	broad.mit.edu	37	7	74211373	74211373	+	Silent	SNP	G	A	A	rs146532025	byFrequency	TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:74211373G>A	uc003ubd.1	-	16	2662	c.2478C>T	c.(2476-2478)ATC>ATT	p.I826I	GTF2IRD2_uc010lbt.1_Silent_p.I373I	NM_173537	NP_775808	Q86UP8	GTD2A_HUMAN	GTF2I repeat domain containing 2	826					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						tgagttccgcgattttgggaa	0													21	118					0	0	0.003330	0	0
POM121C	100101267	broad.mit.edu	37	7	75051364	75051364	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:75051364G>A	uc003udk.3	-	13	3056	c.2171C>T	c.(2170-2172)CCC>CTC	p.P724L		NM_001099415	NP_001092885	A8CG34	P121C_HUMAN	POM121 membrane glycoprotein (rat)-like	966	Pore side (Potential).				mRNA transport|protein transport|transmembrane transport	endoplasmic reticulum membrane|nuclear membrane|nuclear pore	protein binding				0						GCCAAAGCTGGGGGTAAGGGC	0.667													5	18					0	0	0.003080	0	0
HIP1	3092	broad.mit.edu	37	7	75186992	75186992	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:75186992G>A	uc003uds.1	-	16	1588	c.1547C>T	c.(1546-1548)TCG>TTG	p.S516L	HIP1_uc011kfz.1_Missense_Mutation_p.S393L	NM_005338	NP_005329	O00291	HIP1_HUMAN	huntingtin interacting protein 1	516	Potential.				activation of caspase activity|cell differentiation|clathrin coat assembly|endocytosis|induction of apoptosis|positive regulation of receptor-mediated endocytosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	clathrin coated vesicle membrane|cytoskeleton|Golgi apparatus|membrane fraction|nucleus	actin binding|clathrin binding|phosphatidylinositol binding|structural constituent of cytoskeleton			lung(3)|pancreas(2)|ovary(1)|breast(1)|central_nervous_system(1)	8						GCGCTCCAACGAATCCTCCAG	0.557			T	PDGFRB	CMML								44	60					0	0	0.008740	0	0
DTX2	113878	broad.mit.edu	37	7	76111856	76111856	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:76111856C>T	uc003uff.3	+	5	856	c.300C>T	c.(298-300)TTC>TTT	p.F100F	DTX2_uc011kgk.1_Silent_p.F9F|DTX2_uc003ufg.3_Silent_p.F100F|DTX2_uc003ufh.3_Silent_p.F100F|DTX2_uc003ufj.3_Silent_p.F100F	NM_020892	NP_065943	Q86UW9	DTX2_HUMAN	deltex 2 isoform a	100	WWE 2.				Notch signaling pathway	cytoplasm|nucleus	protein binding|zinc ion binding			ovary(1)|skin(1)	2						GACACCTGTTCCCCCAGCACT	0.552													25	54					0	0	0.004656	0	0
FGL2	10875	broad.mit.edu	37	7	76825644	76825644	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:76825644G>A	uc003ugb.2	-	2	1312	c.1272C>T	c.(1270-1272)TCC>TCT	p.S424S	CCDC146_uc003ufz.1_Intron|CCDC146_uc003uga.2_Intron	NM_006682	NP_006673	Q14314	FGL2_HUMAN	fibrinogen-like 2 precursor	424	Fibrinogen C-terminal.				signal transduction	fibrinogen complex	receptor binding			skin(2)	2						CCTCTTTGAAGGAGGACTTGT	0.438													4	35					0	0	0.009096	0	0
FGL2	10875	broad.mit.edu	37	7	76825985	76825985	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:76825985C>T	uc003ugb.2	-	2	971	c.931G>A	c.(931-933)GAA>AAA	p.E311K	CCDC146_uc003ufz.1_Intron|CCDC146_uc003uga.2_Intron	NM_006682	NP_006673	Q14314	FGL2_HUMAN	fibrinogen-like 2 precursor	311	Fibrinogen C-terminal.				signal transduction	fibrinogen complex	receptor binding			skin(2)	2						GCATATAGTTCGACACCATTA	0.383													22	55					0	0	0.002780	0	0
MAGI2	9863	broad.mit.edu	37	7	77756673	77756673	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:77756673G>A	uc003ugx.2	-	19	3518	c.3264C>T	c.(3262-3264)TTC>TTT	p.F1088F	MAGI2_uc003ugy.2_Silent_p.F1074F|MAGI2_uc010ldx.1_Silent_p.F681F	NM_012301	NP_036433	Q86UL8	MAGI2_HUMAN	membrane associated guanylate kinase, WW and PDZ	1088	Pro-rich.					cell junction|synapse|synaptosome	phosphatase binding			ovary(5)|lung(4)|breast(1)|skin(1)	11		all_cancers(73;0.0064)|all_epithelial(88;0.087)|all_neural(109;0.0936)|Medulloblastoma(109;0.166)|Melanoma(862;0.236)				TGTAGTCTGTGAATGGAGGCT	0.537													20	48					0	0	0.010504	0	0
MAGI2	9863	broad.mit.edu	37	7	77824342	77824342	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:77824342C>T	uc003ugx.2	-	12	2372	c.2118G>A	c.(2116-2118)ACG>ACA	p.T706T	MAGI2_uc003ugy.2_Silent_p.T706T|MAGI2_uc010ldx.1_Silent_p.T315T|MAGI2_uc010ldy.1_Silent_p.T315T	NM_012301	NP_036433	Q86UL8	MAGI2_HUMAN	membrane associated guanylate kinase, WW and PDZ	706						cell junction|synapse|synaptosome	phosphatase binding			ovary(5)|lung(4)|breast(1)|skin(1)	11		all_cancers(73;0.0064)|all_epithelial(88;0.087)|all_neural(109;0.0936)|Medulloblastoma(109;0.166)|Melanoma(862;0.236)				CAGATAAACTCGTTTGAGGAC	0.507													7	36					0	0	0.004482	0	0
GNAI1	2770	broad.mit.edu	37	7	79818490	79818490	+	Silent	SNP	T	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:79818490T>C	uc003uhb.1	+	3	583	c.246T>C	c.(244-246)ATT>ATC	p.I82I	GNAI1_uc011kgt.1_Silent_p.I30I	NM_002069	NP_002060	P63096	GNAI1_HUMAN	guanine nucleotide binding protein (G protein),	82					cell cycle|cell division|inhibition of adenylate cyclase activity by G-protein signaling pathway|platelet activation|synaptic transmission	centrosome|heterotrimeric G-protein complex|midbody|nucleus	G-protein beta/gamma-subunit complex binding|GTP binding|metabotropic serotonin receptor binding|signal transducer activity			upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						AGTCAATTATTGCTATCATTA	0.413													10	27					0	0	0.010729	0	0
HGF	3082	broad.mit.edu	37	7	81372745	81372745	+	Silent	SNP	G	A	A	rs147312555	by1000genomes	TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:81372745G>A	uc003uhl.2	-	7	954	c.789C>T	c.(787-789)CCC>CCT	p.P263P	HGF_uc003uhm.2_Silent_p.P258P|HGF_uc003uhn.1_Silent_p.P263P|HGF_uc003uho.1_Silent_p.P258P	NM_000601	NP_000592	P14210	HGF_HUMAN	hepatocyte growth factor isoform 1	263	Kringle 2.				epithelial to mesenchymal transition|mitosis|platelet activation|platelet degranulation|proteolysis|regulation of branching involved in salivary gland morphogenesis by mesenchymal-epithelial signaling	platelet alpha granule lumen	growth factor activity|serine-type endopeptidase activity			ovary(2)|central_nervous_system(2)	4						GCTGGCCATCGGGATTGCGGC	0.493													9	36					0	0	0.004482	0	0
PCLO	27445	broad.mit.edu	37	7	82390025	82390025	+	Missense_Mutation	SNP	C	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:82390025C>A	uc003uhx.2	-	24	15507	c.15218G>T	c.(15217-15219)AGA>ATA	p.R5073I		NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	4996	C2 2.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TCGATCATGTCTGCATACTCT	0.328													11	45					1.58986e-06	1.70406e-06	0.008291	1	0
PCLO	27445	broad.mit.edu	37	7	82451874	82451874	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:82451874C>T	uc003uhx.2	-	20	15017	c.14728G>A	c.(14728-14730)GAA>AAA	p.E4910K	PCLO_uc003uhv.2_Missense_Mutation_p.E4910K|PCLO_uc003uht.1_Missense_Mutation_p.E352K|PCLO_uc003uhu.1_Missense_Mutation_p.E331K	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	4772					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						CCTGCATCTTCCAGGTGGGTC	0.507													52	141					0	0	0.014410	0	0
PCLO	27445	broad.mit.edu	37	7	82475901	82475901	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:82475901G>A	uc003uhx.2	-	12	14102	c.13813C>T	c.(13813-13815)CAT>TAT	p.H4605Y	PCLO_uc003uhv.2_Missense_Mutation_p.H4605Y|PCLO_uc003uht.1_Missense_Mutation_p.H56Y|PCLO_uc003uhu.1_Missense_Mutation_p.H35Y	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	4493					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GGTGGCTCATGAAGTTCCAGA	0.333													9	32					0	0	0.004482	0	0
PCLO	27445	broad.mit.edu	37	7	82544526	82544526	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:82544526G>A	uc003uhx.2	-	7	13065	c.12776C>T	c.(12775-12777)TCT>TTT	p.S4259F	PCLO_uc003uhv.2_Missense_Mutation_p.S4259F|PCLO_uc010lec.2_Missense_Mutation_p.S1224F	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	4190					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TGTGCCAAGAGAAGATCCCAT	0.433													7	7					0	0	0.001984	0	0
PCLO	27445	broad.mit.edu	37	7	82544610	82544610	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:82544610G>A	uc003uhx.2	-	7	12981	c.12692C>T	c.(12691-12693)TCC>TTC	p.S4231F	PCLO_uc003uhv.2_Missense_Mutation_p.S4231F|PCLO_uc010lec.2_Missense_Mutation_p.S1196F	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	4162					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TGCCCTGGAGGAAATGCCACC	0.388													10	27					0	0	0.013537	0	0
PCLO	27445	broad.mit.edu	37	7	82578833	82578833	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:82578833C>T	uc003uhx.2	-	6	11360	c.11071G>A	c.(11071-11073)GAA>AAA	p.E3691K	PCLO_uc003uhv.2_Missense_Mutation_p.E3691K|PCLO_uc010lec.2_Missense_Mutation_p.E656K	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	3622					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						CTGGAACTTTCGTCTGCTGTT	0.463													56	150					0	0	0.014410	0	0
PCLO	27445	broad.mit.edu	37	7	82581291	82581291	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:82581291G>A	uc003uhx.2	-	5	9267	c.8978C>T	c.(8977-8979)TCC>TTC	p.S2993F	PCLO_uc003uhv.2_Missense_Mutation_p.S2993F|PCLO_uc010lec.2_5'Flank	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	2924					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GTCAGACATGGAAGGCTTCAT	0.403													56	136					0	0	0.014410	0	0
PCLO	27445	broad.mit.edu	37	7	82582368	82582368	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:82582368G>A	uc003uhx.2	-	5	8190	c.7901C>T	c.(7900-7902)TCT>TTT	p.S2634F	PCLO_uc003uhv.2_Missense_Mutation_p.S2634F|PCLO_uc010lec.2_5'Flank	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	2565					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						CTGTTCTGAAGAAATTGGAAT	0.453													33	54					0	0	0.003271	0	0
PCLO	27445	broad.mit.edu	37	7	82583731	82583731	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:82583731C>T	uc003uhx.2	-	5	6827	c.6538G>A	c.(6538-6540)GAC>AAC	p.D2180N	PCLO_uc003uhv.2_Missense_Mutation_p.D2180N|PCLO_uc010lec.2_5'Flank	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	2111					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GAAGGTGTGTCAGAGGGTGGG	0.443													16	27					0	0	0.004990	0	0
PCLO	27445	broad.mit.edu	37	7	82583938	82583938	+	Missense_Mutation	SNP	G	A	A	rs61995903		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:82583938G>A	uc003uhx.2	-	5	6620	c.6331C>T	c.(6331-6333)CTC>TTC	p.L2111F	PCLO_uc003uhv.2_Missense_Mutation_p.L2111F	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	2042					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GCTCCTGAGAGAACACTTGAT	0.463													15	14					0	0	0.003163	0	0
PCLO	27445	broad.mit.edu	37	7	82584822	82584822	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:82584822G>A	uc003uhx.2	-	5	5736	c.5447C>T	c.(5446-5448)GCT>GTT	p.A1816V	PCLO_uc003uhv.2_Missense_Mutation_p.A1816V	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	1747					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TCTTCTCTGAGCTCGAAGTTC	0.408													36	109					0	0	0.004289	0	0
PCLO	27445	broad.mit.edu	37	7	82585639	82585639	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:82585639C>T	uc003uhx.2	-	5	4919	c.4630G>A	c.(4630-4632)GAA>AAA	p.E1544K	PCLO_uc003uhv.2_Missense_Mutation_p.E1544K	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	1475					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TGGCTGTCTTCCTGTTTATAC	0.408													18	47					0	0	0.004990	0	0
PCLO	27445	broad.mit.edu	37	7	82595680	82595680	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:82595680C>T	uc003uhx.2	-	4	3713	c.3424G>A	c.(3424-3426)GAA>AAA	p.E1142K	PCLO_uc003uhv.2_Missense_Mutation_p.E1142K	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	1081					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GATGATGATTCTGTAGGAACA	0.433													33	43					0	0	0.012213	0	0
PCLO	27445	broad.mit.edu	37	7	82763878	82763878	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:82763878C>T	uc003uhx.2	-	3	3277	c.2988G>A	c.(2986-2988)GTG>GTA	p.V996V	PCLO_uc003uhv.2_Silent_p.V996V	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	942	Pro-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TTTCCTTTTTCACAGGTATAC	0.468													8	31					0	0	0.006214	0	0
PCLO	27445	broad.mit.edu	37	7	82763974	82763974	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:82763974C>T	uc003uhx.2	-	3	3181	c.2892G>A	c.(2890-2892)ATG>ATA	p.M964I	PCLO_uc003uhv.2_Missense_Mutation_p.M964I	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	910	Pro-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GGGCTTGTTTCATTGGGGCCC	0.507													12	20					0	0	0.006122	0	0
SEMA3E	9723	broad.mit.edu	37	7	82997202	82997202	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:82997202C>T	uc003uhy.1	-	17	2494	c.2028G>A	c.(2026-2028)GAG>GAA	p.E676E		NM_012431	NP_036563	O15041	SEM3E_HUMAN	semaphorin 3E precursor	676					axon guidance	extracellular space|membrane	receptor activity			ovary(3)	3		Medulloblastoma(109;0.109)				CCTCGACTTTCTCCTCTTCCA	0.483													12	38					0	0	0.001855	0	0
SEMA3E	9723	broad.mit.edu	37	7	83029528	83029529	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:83029528_83029529GG>AA	uc003uhy.1	-	11	1647_1648	c.1181_1182CC>TT	c.(1180-1182)ACC>ATT	p.T394I		NM_012431	NP_036563	O15041	SEM3E_HUMAN	semaphorin 3E precursor	394	Sema.				axon guidance	extracellular space|membrane	receptor activity			ovary(3)	3		Medulloblastoma(109;0.109)				GATAGTCCTTGGTGGTTCCGTA	0.386													19	100					0	0	0.004672	0	0
SEMA3A	10371	broad.mit.edu	37	7	83590814	83590814	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:83590814C>T	uc003uhz.2	-	17	2504	c.2189G>A	c.(2188-2190)CGA>CAA	p.R730Q		NM_006080	NP_006071	Q14563	SEM3A_HUMAN	semaphorin 3A precursor	730	Arg/Lys-rich (basic).				axon guidance	extracellular region|membrane	receptor activity			ovary(2)|breast(1)|kidney(1)	4						ACGTTGTTTTCGGTCCCTTTT	0.468													19	50					0	0	0.006122	0	0
SEMA3D	223117	broad.mit.edu	37	7	84697527	84697527	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:84697527G>A	uc003uic.2	-	5	609	c.569C>T	c.(568-570)CCT>CTT	p.P190L	SEMA3D_uc010led.2_Missense_Mutation_p.P190L|SEMA3D_uc010lee.1_Missense_Mutation_p.P190L	NM_152754	NP_689967	O95025	SEM3D_HUMAN	semaphorin 3D precursor	190	Sema.				cell differentiation|nervous system development	extracellular region|membrane	receptor activity			ovary(3)|large_intestine(2)	5						TGAAGCAAAAGGCTGCTGAGG	0.358													19	20					0	0	0.014323	0	0
GRM3	2913	broad.mit.edu	37	7	86468384	86468384	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:86468384G>A	uc003uid.2	+	4	2653	c.1554G>A	c.(1552-1554)ATG>ATA	p.M518I	GRM3_uc010lef.2_Intron|GRM3_uc010leg.2_Missense_Mutation_p.M390I|GRM3_uc010leh.2_Missense_Mutation_p.M110I	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	518	Extracellular (Potential).				synaptic transmission	integral to plasma membrane				lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	CCAATGAAATGAAGAATATGC	0.522													16	44					0	0	0.003163	0	0
GRM3	2913	broad.mit.edu	37	7	86468417	86468417	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:86468417G>A	uc003uid.2	+	4	2686	c.1587G>A	c.(1585-1587)TGG>TGA	p.W529*	GRM3_uc010lef.2_Intron|GRM3_uc010leg.2_Nonsense_Mutation_p.W401*|GRM3_uc010leh.2_Nonsense_Mutation_p.W121*	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	529	Extracellular (Potential).				synaptic transmission	integral to plasma membrane				lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	TCTGCTGCTGGATTTGCATCC	0.542													21	60					0	0	0.012319	0	0
GRM3	2913	broad.mit.edu	37	7	86468644	86468644	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:86468644C>T	uc003uid.2	+	4	2913	c.1814C>T	c.(1813-1815)CCC>CTC	p.P605L	GRM3_uc010lef.2_Intron|GRM3_uc010leg.2_Missense_Mutation_p.P477L|GRM3_uc010leh.2_Missense_Mutation_p.P197L	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	605	Cytoplasmic (Potential).				synaptic transmission	integral to plasma membrane				lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	AACAACACACCCTTGGTCAAA	0.483													20	55					0	0	0.007413	0	0
KIAA1324L	222223	broad.mit.edu	37	7	86526867	86526867	+	Missense_Mutation	SNP	C	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:86526867C>G	uc011kha.1	-	19	2825	c.2640G>C	c.(2638-2640)GAG>GAC	p.E880D	KIAA1324L_uc003uif.1_Missense_Mutation_p.E640D|KIAA1324L_uc011kgz.1_Missense_Mutation_p.E766D|KIAA1324L_uc003uie.2_Missense_Mutation_p.E713D	NM_001142749	NP_001136221	A8MWY0	K132L_HUMAN	hypothetical protein LOC222223 isoform 1	880	Extracellular (Potential).					integral to membrane				ovary(6)|skin(1)	7	Esophageal squamous(14;0.0058)					GGAAGTCATGCTCCGTACACA	0.473													6	35					0	0	0.001984	0	0
ABCB1	5243	broad.mit.edu	37	7	87148741	87148741	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:87148741G>A	uc003uiz.1	-	24	3246	c.2828C>T	c.(2827-2829)TCC>TTC	p.S943F	ABCB1_uc011khc.1_Missense_Mutation_p.S879F	NM_000927	NP_000918	P08183	MDR1_HUMAN	ATP-binding cassette, subfamily B, member 1	943	Helical; (Potential).|ABC transmembrane type-1 2.				G2/M transition of mitotic cell cycle|stem cell proliferation	apical plasma membrane|cell surface|Golgi membrane|integral to membrane|intercellular canaliculus|membrane fraction	ATP binding|protein binding|xenobiotic-transporting ATPase activity			ovary(4)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	7	Esophageal squamous(14;0.00164)				Adenosine triphosphate(DB00171)|Alfentanil(DB00802)|Arsenic trioxide(DB01169)|Atazanavir(DB01072)|Carvedilol(DB01136)|Colchicine(DB01394)|Cyclosporine(DB00091)|Daunorubicin(DB00694)|Dipyridamole(DB00975)|Estramustine(DB01196)|Flupenthixol(DB00875)|Imatinib(DB00619)|Itraconazole(DB01167)|Nicardipine(DB00622)|Propafenone(DB01182)|Quinacrine(DB01103)|Quinidine(DB00908)|Ranolazine(DB00243)|Rifampin(DB01045)|Roxithromycin(DB00778)|Saquinavir(DB01232)|Tamoxifen(DB00675)|Vinblastine(DB00570)	CTGGGTGAAGGAAAATGTAAT	0.383													21	32					0	0	0.008871	0	0
ABCB1	5243	broad.mit.edu	37	7	87179839	87179839	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:87179839C>T	uc003uiz.1	-	12	1587	c.1169G>A	c.(1168-1170)GGA>GAA	p.G390E	ABCB1_uc011khc.1_Missense_Mutation_p.G326E	NM_000927	NP_000918	P08183	MDR1_HUMAN	ATP-binding cassette, subfamily B, member 1	390	Cytoplasmic (Potential).				G2/M transition of mitotic cell cycle|stem cell proliferation	apical plasma membrane|cell surface|Golgi membrane|integral to membrane|intercellular canaliculus|membrane fraction	ATP binding|protein binding|xenobiotic-transporting ATPase activity			ovary(4)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	7	Esophageal squamous(14;0.00164)				Adenosine triphosphate(DB00171)|Alfentanil(DB00802)|Arsenic trioxide(DB01169)|Atazanavir(DB01072)|Carvedilol(DB01136)|Colchicine(DB01394)|Cyclosporine(DB00091)|Daunorubicin(DB00694)|Dipyridamole(DB00975)|Estramustine(DB01196)|Flupenthixol(DB00875)|Imatinib(DB00619)|Itraconazole(DB01167)|Nicardipine(DB00622)|Propafenone(DB01182)|Quinacrine(DB01103)|Quinidine(DB00908)|Ranolazine(DB00243)|Rifampin(DB01045)|Roxithromycin(DB00778)|Saquinavir(DB01232)|Tamoxifen(DB00675)|Vinblastine(DB00570)	TTCCAAATTTCCCTTAATATT	0.313													24	47					0	0	0.003954	0	0
ABCB1	5243	broad.mit.edu	37	7	87214993	87214993	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:87214993G>A	uc003uiz.1	-	5	539	c.121C>T	c.(121-123)CGC>TGC	p.R41C	ABCB1_uc011khc.1_Missense_Mutation_p.R41C	NM_000927	NP_000918	P08183	MDR1_HUMAN	ATP-binding cassette, subfamily B, member 1	41	Cytoplasmic (Potential).				G2/M transition of mitotic cell cycle|stem cell proliferation	apical plasma membrane|cell surface|Golgi membrane|integral to membrane|intercellular canaliculus|membrane fraction	ATP binding|protein binding|xenobiotic-transporting ATPase activity			ovary(4)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	7	Esophageal squamous(14;0.00164)				Adenosine triphosphate(DB00171)|Alfentanil(DB00802)|Arsenic trioxide(DB01169)|Atazanavir(DB01072)|Carvedilol(DB01136)|Colchicine(DB01394)|Cyclosporine(DB00091)|Daunorubicin(DB00694)|Dipyridamole(DB00975)|Estramustine(DB01196)|Flupenthixol(DB00875)|Imatinib(DB00619)|Itraconazole(DB01167)|Nicardipine(DB00622)|Propafenone(DB01182)|Quinacrine(DB01103)|Quinidine(DB00908)|Ranolazine(DB00243)|Rifampin(DB01045)|Roxithromycin(DB00778)|Saquinavir(DB01232)|Tamoxifen(DB00675)|Vinblastine(DB00570)	TTTGAATAGCGAAACTAAAAA	0.328													15	12					0	0	0.002450	0	0
ADAM22	53616	broad.mit.edu	37	7	87774472	87774472	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:87774472C>T	uc003ujn.2	+	16	1432	c.1353C>T	c.(1351-1353)TTC>TTT	p.F451F	ADAM22_uc003ujk.1_Silent_p.F451F|ADAM22_uc003ujl.1_Silent_p.F451F|ADAM22_uc003ujm.2_Silent_p.F451F|ADAM22_uc003ujo.2_Silent_p.F451F|ADAM22_uc003ujp.1_Silent_p.F503F	NM_021723	NP_068369	Q9P0K1	ADA22_HUMAN	ADAM metallopeptidase domain 22 isoform 1	451	Disintegrin.|Extracellular (Potential).				cell adhesion|central nervous system development|negative regulation of cell adhesion|proteolysis	integral to membrane	integrin binding|metalloendopeptidase activity|protein binding|receptor activity|zinc ion binding			ovary(4)|skin(2)|lung(1)|kidney(1)	8	Esophageal squamous(14;0.00202)		STAD - Stomach adenocarcinoma(171;0.215)			GCAATGGCTTCATTGAAACTG	0.413													19	27					0	0	0.003330	0	0
ADAM22	53616	broad.mit.edu	37	7	87792331	87792331	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:87792331G>A	uc003ujn.2	+	23	1991	c.1912G>A	c.(1912-1914)GGG>AGG	p.G638R	ADAM22_uc003ujk.1_Missense_Mutation_p.G638R|ADAM22_uc003ujl.1_Missense_Mutation_p.G638R|ADAM22_uc003ujm.2_Missense_Mutation_p.G638R|ADAM22_uc003ujo.2_Missense_Mutation_p.G638R|ADAM22_uc003ujp.1_Missense_Mutation_p.G690R	NM_021723	NP_068369	Q9P0K1	ADA22_HUMAN	ADAM metallopeptidase domain 22 isoform 1	638	Cys-rich.|Extracellular (Potential).				cell adhesion|central nervous system development|negative regulation of cell adhesion|proteolysis	integral to membrane	integrin binding|metalloendopeptidase activity|protein binding|receptor activity|zinc ion binding			ovary(4)|skin(2)|lung(1)|kidney(1)	8	Esophageal squamous(14;0.00202)		STAD - Stomach adenocarcinoma(171;0.215)			TTTTAGTGGTGGGCATGTTAA	0.378													16	71					0	0	0.004990	0	0
ADAM22	53616	broad.mit.edu	37	7	87792381	87792381	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:87792381G>A	uc003ujn.2	+	23	2041	c.1962G>A	c.(1960-1962)GGG>GGA	p.G654G	ADAM22_uc003ujk.1_Silent_p.G654G|ADAM22_uc003ujl.1_Silent_p.G654G|ADAM22_uc003ujm.2_Silent_p.G654G|ADAM22_uc003ujo.2_Silent_p.G654G|ADAM22_uc003ujp.1_Silent_p.G706G	NM_021723	NP_068369	Q9P0K1	ADA22_HUMAN	ADAM metallopeptidase domain 22 isoform 1	654	Cys-rich.|Extracellular (Potential).				cell adhesion|central nervous system development|negative regulation of cell adhesion|proteolysis	integral to membrane	integrin binding|metalloendopeptidase activity|protein binding|receptor activity|zinc ion binding			ovary(4)|skin(2)|lung(1)|kidney(1)	8	Esophageal squamous(14;0.00202)		STAD - Stomach adenocarcinoma(171;0.215)			TGGAAGATGGGACACCTTGTG	0.398													44	38					0	0	0.014410	0	0
STEAP4	79689	broad.mit.edu	37	7	87912071	87912071	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:87912071C>T	uc003ujs.2	-	3	974	c.869G>A	c.(868-870)CGA>CAA	p.R290Q	STEAP4_uc010lek.2_Intron|STEAP4_uc003ujt.2_Missense_Mutation_p.R290Q	NM_024636	NP_078912	Q687X5	STEA4_HUMAN	tumor necrosis factor, alpha-induced protein 9	290	Ferric oxidoreductase.				fat cell differentiation|ion transport|iron ion homeostasis	Golgi membrane|integral to membrane|plasma membrane	electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|oxidoreductase activity				0	Esophageal squamous(14;0.00802)					AAGCTGCTTTCGGCAAAGCAT	0.473													11	30					0	0	0.010729	0	0
STEAP4	79689	broad.mit.edu	37	7	87912132	87912132	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:87912132G>A	uc003ujs.2	-	3	913	c.808C>T	c.(808-810)CTG>TTG	p.L270L	STEAP4_uc010lek.2_Intron|STEAP4_uc003ujt.2_Silent_p.L270L	NM_024636	NP_078912	Q687X5	STEA4_HUMAN	tumor necrosis factor, alpha-induced protein 9	270	Ferric oxidoreductase.				fat cell differentiation|ion transport|iron ion homeostasis	Golgi membrane|integral to membrane|plasma membrane	electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|oxidoreductase activity				0	Esophageal squamous(14;0.00802)					CCTCGGTACAGTTGTAGAATG	0.473													7	40					0	0	0.003080	0	0
STEAP4	79689	broad.mit.edu	37	7	87912231	87912231	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:87912231G>A	uc003ujs.2	-	3	814	c.709C>T	c.(709-711)CGT>TGT	p.R237C	STEAP4_uc010lek.2_Intron|STEAP4_uc003ujt.2_Missense_Mutation_p.R237C	NM_024636	NP_078912	Q687X5	STEA4_HUMAN	tumor necrosis factor, alpha-induced protein 9	237					fat cell differentiation|ion transport|iron ion homeostasis	Golgi membrane|integral to membrane|plasma membrane	electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|oxidoreductase activity				0	Esophageal squamous(14;0.00802)					ATAGCCATACGAAATGTATTA	0.363													10	39					0	0	0.010729	0	0
ZNF804B	219578	broad.mit.edu	37	7	88963763	88963763	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:88963763G>A	uc011khi.1	+	4	2005	c.1467G>A	c.(1465-1467)AAG>AAA	p.K489K		NM_181646	NP_857597	A4D1E1	Z804B_HUMAN	zinc finger protein 804B	489						intracellular	zinc ion binding			ovary(5)|skin(3)|pancreas(2)|upper_aerodigestive_tract(1)	11	all_hematologic(106;0.125)|Lung NSC(181;0.15)|all_lung(186;0.151)		STAD - Stomach adenocarcinoma(171;0.0513)			GGAACACAAAGGAAGACCACA	0.408										HNSCC(36;0.09)			10	19					0	0	0.010729	0	0
ZNF804B	219578	broad.mit.edu	37	7	88964781	88964781	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:88964781G>A	uc011khi.1	+	4	3023	c.2485G>A	c.(2485-2487)GAT>AAT	p.D829N		NM_181646	NP_857597	A4D1E1	Z804B_HUMAN	zinc finger protein 804B	829						intracellular	zinc ion binding			ovary(5)|skin(3)|pancreas(2)|upper_aerodigestive_tract(1)	11	all_hematologic(106;0.125)|Lung NSC(181;0.15)|all_lung(186;0.151)		STAD - Stomach adenocarcinoma(171;0.0513)			CATCTATTGTGATTCTAACTC	0.373										HNSCC(36;0.09)			11	30					0	0	0.010729	0	0
C7orf63	79846	broad.mit.edu	37	7	89938629	89938629	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:89938629G>A	uc010lep.2	+	22	2854	c.2603G>A	c.(2602-2604)CGA>CAA	p.R868Q	C7orf63_uc011khj.1_Missense_Mutation_p.R850Q|C7orf63_uc011khk.1_Missense_Mutation_p.R384Q	NM_001039706	NP_001034795	A5D8W1	CG063_HUMAN	hypothetical protein LOC79846 isoform 1	868							binding			ovary(1)	1						TACCATAAACGACCACAAAAT	0.294													35	70					0	0	0.006999	0	0
AKAP9	10142	broad.mit.edu	37	7	91718797	91718797	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:91718797G>A	uc003ulg.2	+	38	9537	c.9312G>A	c.(9310-9312)AGG>AGA	p.R3104R	AKAP9_uc003ulf.2_Silent_p.R3096R|AKAP9_uc003uli.2_Silent_p.R2727R|AKAP9_uc003ulj.2_Silent_p.R874R|AKAP9_uc003ulk.2_Silent_p.R379R|AKAP9_uc003ull.2_5'Flank	NM_005751	NP_005742	Q99996	AKAP9_HUMAN	A-kinase anchor protein 9 isoform 2	3108					G2/M transition of mitotic cell cycle|signal transduction|synaptic transmission|transport	centrosome|cytosol|Golgi apparatus	receptor binding			breast(7)|ovary(6)|lung(5)|skin(3)|large_intestine(2)|prostate(2)|central_nervous_system(1)	26	all_cancers(62;2.46e-09)|all_epithelial(64;4.42e-08)|Breast(17;0.00206)|all_lung(186;0.185)|all_hematologic(106;0.215)|Lung NSC(181;0.249)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			TGAATGGTAGGAAAATTACTC	0.393			T	BRAF	papillary thyroid								7	42					0	0	0.001984	0	0
SAMD9	54809	broad.mit.edu	37	7	92731309	92731309	+	Missense_Mutation	SNP	C	T	T	rs138600971	byFrequency	TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:92731309C>T	uc003umf.2	-	3	4358	c.4102G>A	c.(4102-4104)GAA>AAA	p.E1368K	SAMD9_uc003umg.2_Missense_Mutation_p.E1368K	NM_017654	NP_060124	Q5K651	SAMD9_HUMAN	sterile alpha motif domain containing 9	1368						cytoplasm		p.E1368K(1)		ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7	all_cancers(62;5.71e-11)|all_epithelial(64;3.25e-10)|Breast(17;0.000675)|Lung NSC(181;0.0969)|all_lung(186;0.125)		STAD - Stomach adenocarcinoma(171;0.000302)			AAAGTATATTCGTTCACTATA	0.348													28	63					0	0	0.006320	0	0
SAMD9	54809	broad.mit.edu	37	7	92732986	92732986	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:92732986G>A	uc003umf.2	-	3	2681	c.2425C>T	c.(2425-2427)CTT>TTT	p.L809F	SAMD9_uc003umg.2_Missense_Mutation_p.L809F	NM_017654	NP_060124	Q5K651	SAMD9_HUMAN	sterile alpha motif domain containing 9	809						cytoplasm				ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7	all_cancers(62;5.71e-11)|all_epithelial(64;3.25e-10)|Breast(17;0.000675)|Lung NSC(181;0.0969)|all_lung(186;0.125)		STAD - Stomach adenocarcinoma(171;0.000302)			TACTGCAGAAGATAGACATTA	0.363													18	53					0	0	0.007413	0	0
CALCR	799	broad.mit.edu	37	7	93098044	93098044	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:93098044C>T	uc003umv.1	-	7	819	c.558G>A	c.(556-558)GGG>GGA	p.G186G	CALCR_uc003ums.1_RNA|CALCR_uc003umt.1_RNA|CALCR_uc003umu.1_Silent_p.G168G|CALCR_uc003umw.2_Silent_p.G168G	NM_001742	NP_001733	P30988	CALCR_HUMAN	calcitonin receptor isoform 2 precursor	168	Helical; Name=1; (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|elevation of cytosolic calcium ion concentration|positive regulation of adenylate cyclase activity|response to glucocorticoid stimulus	integral to plasma membrane	calcitonin binding|calcitonin binding|calcitonin receptor activity|calcitonin receptor activity|protein binding			ovary(3)|lung(3)|skin(2)|pancreas(1)	9	all_cancers(62;3.18e-12)|all_epithelial(64;1.34e-11)|Breast(17;0.000675)|Lung NSC(181;0.207)		STAD - Stomach adenocarcinoma(171;0.000244)		Salmon Calcitonin(DB00017)	ACACGAAAATCCCCAGGGAAA	0.388													17	46					0	0	0.006122	0	0
CALCR	799	broad.mit.edu	37	7	93108777	93108777	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:93108777G>A	uc003umv.1	-	4	409	c.148C>T	c.(148-150)CCA>TCA	p.P50S	CALCR_uc003ums.1_RNA|CALCR_uc003umt.1_RNA|CALCR_uc003umu.1_Missense_Mutation_p.P32S|CALCR_uc003umw.2_Missense_Mutation_p.P32S	NM_001742	NP_001733	P30988	CALCR_HUMAN	calcitonin receptor isoform 2 precursor	32	Extracellular (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|elevation of cytosolic calcium ion concentration|positive regulation of adenylate cyclase activity|response to glucocorticoid stimulus	integral to plasma membrane	calcitonin binding|calcitonin binding|calcitonin receptor activity|calcitonin receptor activity|protein binding			ovary(3)|lung(3)|skin(2)|pancreas(1)	9	all_cancers(62;3.18e-12)|all_epithelial(64;1.34e-11)|Breast(17;0.000675)|Lung NSC(181;0.207)		STAD - Stomach adenocarcinoma(171;0.000244)		Salmon Calcitonin(DB00017)	TCTATTGTTGGATAGGTTTGA	0.413													33	68					0	0	0.010818	0	0
TFPI2	7980	broad.mit.edu	37	7	93518426	93518426	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:93518426G>A	uc003umy.1	-	3	456	c.381C>T	c.(379-381)TCC>TCT	p.S127S	GNGT1_uc003umx.1_Intron|TFPI2_uc003umz.1_Silent_p.S127S|TFPI2_uc003una.1_Silent_p.S116S|TFPI2_uc003unb.1_Silent_p.S127S|TFPI2_uc010lfg.1_Intron	NM_006528	NP_006519	P48307	TFPI2_HUMAN	tissue factor pathway inhibitor 2 precursor	127	BPTI/Kunitz inhibitor 2.				blood coagulation	proteinaceous extracellular matrix	extracellular matrix structural constituent|serine-type endopeptidase inhibitor activity			pancreas(1)	1	all_cancers(62;4.45e-10)|all_epithelial(64;2.92e-09)|Lung NSC(181;0.218)		STAD - Stomach adenocarcinoma(171;0.000967)			GACACCCACCGGAAAAGAATT	0.438													54	68					0	0	0.014410	0	0
COL1A2	1278	broad.mit.edu	37	7	94049955	94049955	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:94049955C>T	uc003ung.1	+	37	2761	c.2290C>T	c.(2290-2292)CCA>TCA	p.P764S	COL1A2_uc011kib.1_Intron|COL1A2_uc010lfi.1_Intron	NM_000089	NP_000080	P08123	CO1A2_HUMAN	alpha 2 type I collagen precursor	764			Missing (in OI2A).		axon guidance|blood vessel development|collagen fibril organization|leukocyte migration|odontogenesis|platelet activation|regulation of blood pressure|Rho protein signal transduction|skeletal system development|skin morphogenesis|transforming growth factor beta receptor signaling pathway	collagen type I|extracellular space|plasma membrane	extracellular matrix structural constituent|identical protein binding|platelet-derived growth factor binding|protein binding, bridging		COL1A2/PLAG1(3)	soft_tissue(3)|central_nervous_system(3)|ovary(2)|skin(1)	9	all_cancers(62;2.46e-09)|all_epithelial(64;2.7e-08)		STAD - Stomach adenocarcinoma(171;0.0031)		Collagenase(DB00048)	AGCTGCTGGCCCAGCTGTAAG	0.507										HNSCC(75;0.22)			10	4					0	0	0.008291	0	0
COL1A2	1278	broad.mit.edu	37	7	94051242	94051242	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:94051242G>A	uc003ung.1	+	39	2852	c.2381G>A	c.(2380-2382)CGG>CAG	p.R794Q	COL1A2_uc011kib.1_Intron|COL1A2_uc010lfi.1_Intron	NM_000089	NP_000080	P08123	CO1A2_HUMAN	alpha 2 type I collagen precursor	794			Missing (in OI2A).		axon guidance|blood vessel development|collagen fibril organization|leukocyte migration|odontogenesis|platelet activation|regulation of blood pressure|Rho protein signal transduction|skeletal system development|skin morphogenesis|transforming growth factor beta receptor signaling pathway	collagen type I|extracellular space|plasma membrane	extracellular matrix structural constituent|identical protein binding|platelet-derived growth factor binding|protein binding, bridging		COL1A2/PLAG1(3)	soft_tissue(3)|central_nervous_system(3)|ovary(2)|skin(1)	9	all_cancers(62;2.46e-09)|all_epithelial(64;2.7e-08)		STAD - Stomach adenocarcinoma(171;0.0031)		Collagenase(DB00048)	GCTGCTGGACGGACTGGTCCC	0.458										HNSCC(75;0.22)			11	49					0	0	0.001855	0	0
COL1A2	1278	broad.mit.edu	37	7	94052311	94052311	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:94052311G>A	uc003ung.1	+	40	2917	c.2446G>A	c.(2446-2448)GAA>AAA	p.E816K	COL1A2_uc011kib.1_Intron|COL1A2_uc010lfi.1_Intron	NM_000089	NP_000080	P08123	CO1A2_HUMAN	alpha 2 type I collagen precursor	816			Missing (in OI2A).		axon guidance|blood vessel development|collagen fibril organization|leukocyte migration|odontogenesis|platelet activation|regulation of blood pressure|Rho protein signal transduction|skeletal system development|skin morphogenesis|transforming growth factor beta receptor signaling pathway	collagen type I|extracellular space|plasma membrane	extracellular matrix structural constituent|identical protein binding|platelet-derived growth factor binding|protein binding, bridging		COL1A2/PLAG1(3)	soft_tissue(3)|central_nervous_system(3)|ovary(2)|skin(1)	9	all_cancers(62;2.46e-09)|all_epithelial(64;2.7e-08)		STAD - Stomach adenocarcinoma(171;0.0031)		Collagenase(DB00048)	TGCTGGGAAAGAAGGGCTTCG	0.562										HNSCC(75;0.22)			31	95					0	0	0.009535	0	0
COL1A2	1278	broad.mit.edu	37	7	94053670	94053670	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:94053670C>T	uc003ung.1	+	41	3059	c.2588C>T	c.(2587-2589)CCT>CTT	p.P863L	COL1A2_uc011kib.1_Intron|COL1A2_uc010lfi.1_RNA	NM_000089	NP_000080	P08123	CO1A2_HUMAN	alpha 2 type I collagen precursor	863					axon guidance|blood vessel development|collagen fibril organization|leukocyte migration|odontogenesis|platelet activation|regulation of blood pressure|Rho protein signal transduction|skeletal system development|skin morphogenesis|transforming growth factor beta receptor signaling pathway	collagen type I|extracellular space|plasma membrane	extracellular matrix structural constituent|identical protein binding|platelet-derived growth factor binding|protein binding, bridging		COL1A2/PLAG1(3)	soft_tissue(3)|central_nervous_system(3)|ovary(2)|skin(1)	9	all_cancers(62;2.46e-09)|all_epithelial(64;2.7e-08)		STAD - Stomach adenocarcinoma(171;0.0031)		Collagenase(DB00048)	ACTCCAGGTCCTCAGGGTCTT	0.502										HNSCC(75;0.22)			44	82					0	0	0.014410	0	0
PPP1R9A	55607	broad.mit.edu	37	7	94897975	94897975	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:94897975G>A	uc003unp.2	+	12	2995	c.2713G>A	c.(2713-2715)GAT>AAT	p.D905N	PPP1R9A_uc010lfj.2_Missense_Mutation_p.D927N|PPP1R9A_uc011kif.1_Missense_Mutation_p.D905N|PPP1R9A_uc003unq.2_Missense_Mutation_p.D905N|PPP1R9A_uc011kig.1_Missense_Mutation_p.D905N|PPP1R9A_uc003unr.2_5'UTR	NM_017650	NP_060120	Q9ULJ8	NEB1_HUMAN	protein phosphatase 1, regulatory (inhibitor)	905	Interacts with TGN38 (By similarity).					cell junction|synapse|synaptosome	actin binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4	all_cancers(62;9.12e-11)|all_epithelial(64;4.34e-09)		STAD - Stomach adenocarcinoma(171;0.0031)			AAGACTGTATGATAGTGTTAG	0.483										HNSCC(28;0.073)			10	34					0	0	0.010729	0	0
PON1	5444	broad.mit.edu	37	7	95025659	95025659	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:95025659C>T	uc011kih.1	-	1	29	c.4G>A	c.(4-6)GGG>AGG	p.G2R	PON3_uc003unt.2_Missense_Mutation_p.G2R|PON3_uc011kii.1_Missense_Mutation_p.G2R			P27169	PON1_HUMAN	SubName: Full=cDNA FLJ57644, highly similar to Serum paraoxonase/arylesterase 1 (EC 3.1.1.2);	2					aromatic compound catabolic process|carboxylic acid catabolic process|organophosphate catabolic process|phosphatidylcholine metabolic process|positive regulation of binding|positive regulation of cholesterol efflux|positive regulation of transporter activity|response to external stimulus	spherical high-density lipoprotein particle	aryldialkylphosphatase activity|arylesterase activity|calcium ion binding|phospholipid binding|protein homodimerization activity			pancreas(1)	1	all_cancers(62;1.04e-10)|all_epithelial(64;3.67e-09)|Lung NSC(181;0.239)		STAD - Stomach adenocarcinoma(171;0.0031)		Atorvastatin(DB01076)|Cefazolin(DB01327)	ACGAGCTTCCCCATGGTCTCG	0.701													21	36					0	0	0.003330	0	0
PDK4	5166	broad.mit.edu	37	7	95222119	95222119	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:95222119C>T	uc003uoa.2	-	4	802	c.482G>A	c.(481-483)CGA>CAA	p.R161Q	PDK4_uc003unz.2_5'Flank	NM_002612	NP_002603	Q16654	PDK4_HUMAN	pyruvate dehydrogenase kinase 4 precursor	161	Histidine kinase.			R->A: Loss of activity.	glucose metabolic process|peptidyl-histidine phosphorylation|pyruvate metabolic process|regulation of acetyl-CoA biosynthetic process from pyruvate	mitochondrial matrix	ATP binding|pyruvate dehydrogenase (acetyl-transferring) kinase activity|two-component sensor activity				0	all_cancers(62;1.06e-10)|all_epithelial(64;1.04e-09)|Lung NSC(181;0.128)|all_lung(186;0.151)		STAD - Stomach adenocarcinoma(171;0.0151)			CATGTAAAATCGATCCAAGAA	0.383													34	30					0	0	0.013726	0	0
PDK4	5166	broad.mit.edu	37	7	95222231	95222231	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:95222231G>A	uc003uoa.2	-	4	690	c.370C>T	c.(370-372)CGA>TGA	p.R124*	PDK4_uc003unz.2_5'Flank	NM_002612	NP_002603	Q16654	PDK4_HUMAN	pyruvate dehydrogenase kinase 4 precursor	124					glucose metabolic process|peptidyl-histidine phosphorylation|pyruvate metabolic process|regulation of acetyl-CoA biosynthetic process from pyruvate	mitochondrial matrix	ATP binding|pyruvate dehydrogenase (acetyl-transferring) kinase activity|two-component sensor activity				0	all_cancers(62;1.06e-10)|all_epithelial(64;1.04e-09)|Lung NSC(181;0.128)|all_lung(186;0.151)		STAD - Stomach adenocarcinoma(171;0.0151)			TGTCTATTTCGAACTTTGATG	0.353													33	40					0	0	0.013726	0	0
SHFM1	7979	broad.mit.edu	37	7	96339008	96339008	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:96339008G>A	uc003uoi.2	-	1	196	c.68C>T	c.(67-69)CCT>CTT	p.P23L	SHFM1_uc010lfn.1_Missense_Mutation_p.P23L	NM_006304	NP_006295	P60896	DSS1_HUMAN	split hand/foot malformation type 1	23					proteolysis	proteasome complex	peptidase activity|protein binding				0	all_cancers(62;4.24e-09)|all_epithelial(64;5.59e-09)|Esophageal squamous(72;0.0125)|all_lung(186;0.0353)|Lung NSC(181;0.0987)					ACCTTCGGCAGGGAACTCTTC	0.597								Direct_reversal_of_damage|Homologous_recombination					56	93					0	0	0.014410	0	0
ASNS	440	broad.mit.edu	37	7	97483989	97483989	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:97483989G>A	uc003uot.3	-	10	1647	c.1141C>T	c.(1141-1143)CCT>TCT	p.P381S	ASNS_uc011kin.1_Missense_Mutation_p.P298S|ASNS_uc003uou.3_Missense_Mutation_p.P381S|ASNS_uc003uov.3_Missense_Mutation_p.P381S|ASNS_uc011kio.1_Missense_Mutation_p.P360S|ASNS_uc003uow.3_Missense_Mutation_p.P360S|ASNS_uc003uox.3_Missense_Mutation_p.P298S	NM_133436	NP_597680	P08243	ASNS_HUMAN	asparagine synthetase	381	Asparagine synthetase.				cellular response to glucose starvation|glutamine metabolic process|negative regulation of apoptosis|positive regulation of mitotic cell cycle	cytosol|soluble fraction	asparagine synthase (glutamine-hydrolyzing) activity|ATP binding			ovary(1)	1	all_cancers(62;6.64e-09)|all_epithelial(64;1.58e-09)|Esophageal squamous(72;0.00448)|Lung NSC(181;0.0342)|all_lung(186;0.0369)				Adenosine triphosphate(DB00171)|L-Asparagine(DB00174)|L-Aspartic Acid(DB00128)|L-Glutamic Acid(DB00142)|L-Glutamine(DB00130)	TCAGGAGAAGGAGCCTATTTC	0.448													14	28					0	0	0.003163	0	0
ASNS	440	broad.mit.edu	37	7	97488238	97488238	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:97488238G>A	uc003uot.3	-	6	1209	c.703C>T	c.(703-705)CTC>TTC	p.L235F	ASNS_uc011kin.1_Missense_Mutation_p.L152F|ASNS_uc003uou.3_Missense_Mutation_p.L235F|ASNS_uc003uov.3_Missense_Mutation_p.L235F|ASNS_uc011kio.1_Missense_Mutation_p.L214F|ASNS_uc003uow.3_Missense_Mutation_p.L214F|ASNS_uc003uox.3_Missense_Mutation_p.L152F	NM_133436	NP_597680	P08243	ASNS_HUMAN	asparagine synthetase	235	Asparagine synthetase.				cellular response to glucose starvation|glutamine metabolic process|negative regulation of apoptosis|positive regulation of mitotic cell cycle	cytosol|soluble fraction	asparagine synthase (glutamine-hydrolyzing) activity|ATP binding			ovary(1)	1	all_cancers(62;6.64e-09)|all_epithelial(64;1.58e-09)|Esophageal squamous(72;0.00448)|Lung NSC(181;0.0342)|all_lung(186;0.0369)				Adenosine triphosphate(DB00171)|L-Asparagine(DB00174)|L-Aspartic Acid(DB00128)|L-Glutamic Acid(DB00142)|L-Glutamine(DB00130)	AGGATCCTGAGGTTGTTCTTC	0.338													33	70					0	0	0.004289	0	0
TMEM130	222865	broad.mit.edu	37	7	98452871	98452871	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:98452871G>A	uc003upo.2	-	5	984	c.795C>T	c.(793-795)TTC>TTT	p.F265F	TMEM130_uc011kiq.1_Silent_p.F246F|TMEM130_uc011kir.1_Silent_p.F265F|TMEM130_uc003upn.2_Silent_p.F163F	NM_001134450	NP_001127922	Q8N3G9	TM130_HUMAN	transmembrane protein 130 isoform a	265	Extracellular (Potential).					Golgi membrane|integral to membrane				ovary(1)|central_nervous_system(1)	2	all_cancers(62;4.05e-09)|all_epithelial(64;2.62e-09)|Lung NSC(181;0.01)|all_lung(186;0.0115)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			ACCTCCCCAGGAAGTTCAAGG	0.572													30	46					0	0	0.013726	0	0
TRRAP	8295	broad.mit.edu	37	7	98509658	98509658	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:98509658C>T	uc003upp.2	+	18	2230	c.2021C>T	c.(2020-2022)TCC>TTC	p.S674F	TRRAP_uc011kis.1_Missense_Mutation_p.S674F|TRRAP_uc003upr.2_Missense_Mutation_p.S366F	NM_003496	NP_003487	Q9Y4A5	TRRAP_HUMAN	transformation/transcription domain-associated	674					histone deubiquitination|histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|PCAF complex|STAGA complex|transcription factor TFTC complex	phosphotransferase activity, alcohol group as acceptor|protein binding|transcription cofactor activity			ovary(9)|large_intestine(8)|central_nervous_system(6)|skin(6)|stomach(5)|upper_aerodigestive_tract(1)|lung(1)|liver(1)	37	all_cancers(62;6.96e-09)|all_epithelial(64;4.86e-09)|Lung NSC(181;0.01)|all_lung(186;0.016)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			GTTGCCAATTCCTTCTTGGCA	0.413													31	80					0	0	0.003271	0	0
TRRAP	8295	broad.mit.edu	37	7	98565207	98565207	+	Silent	SNP	C	T	T	rs139721649		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:98565207C>T	uc003upp.2	+	50	7586	c.7377C>T	c.(7375-7377)TTC>TTT	p.F2459F	TRRAP_uc011kis.1_Silent_p.F2441F|TRRAP_uc003upr.2_Silent_p.F2158F	NM_003496	NP_003487	Q9Y4A5	TRRAP_HUMAN	transformation/transcription domain-associated	2459					histone deubiquitination|histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|PCAF complex|STAGA complex|transcription factor TFTC complex	phosphotransferase activity, alcohol group as acceptor|protein binding|transcription cofactor activity	p.F2441F(2)|p.F2459F(1)		ovary(9)|large_intestine(8)|central_nervous_system(6)|skin(6)|stomach(5)|upper_aerodigestive_tract(1)|lung(1)|liver(1)	37	all_cancers(62;6.96e-09)|all_epithelial(64;4.86e-09)|Lung NSC(181;0.01)|all_lung(186;0.016)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			CAAAGTTTTTCGAGGTTTTTG	0.552													15	61					0	0	0.002450	0	0
PTCD1	26024	broad.mit.edu	37	7	99022765	99022765	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:99022765G>A	uc003uqh.2	-	6	1521	c.1390C>T	c.(1390-1392)CGG>TGG	p.R464W	PTCD1_uc011kiw.1_Missense_Mutation_p.R513W	NM_015545	NP_056360	O75127	PTCD1_HUMAN	pentatricopeptide repeat domain 1	464										ovary(1)	1	all_cancers(62;2.54e-08)|all_epithelial(64;2.55e-09)|Lung NSC(181;0.0053)|all_lung(186;0.00895)|Esophageal squamous(72;0.0166)		STAD - Stomach adenocarcinoma(171;0.215)			AAGGCCAGCCGGTCAGCTGGG	0.652													11	31					0	0	0.010729	0	0
CYP3A7	1551	broad.mit.edu	37	7	99308381	99308381	+	Missense_Mutation	SNP	C	T	T	rs147031398		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:99308381C>T	uc003uru.2	-	10	1105	c.1000G>A	c.(1000-1002)GAA>AAA	p.E334K	ZNF498_uc003urn.2_Intron|CYP3A5_uc003urs.2_Intron|CYP3A5_uc010lgg.2_Intron	NM_000765	NP_000756	P24462	CP3A7_HUMAN	cytochrome P450, family 3, subfamily A,	334					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)	1	Lung NSC(181;0.0144)|Esophageal squamous(72;0.0166)|all_lung(186;0.0228)					GTATCAATTTCCTTCTGCACT	0.453													17	32					0	0	0.006122	0	0
CYP3A43	64816	broad.mit.edu	37	7	99447176	99447176	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:99447176G>A	uc003urx.1	+	7	632	c.529G>A	c.(529-531)GGG>AGG	p.G177R	CYP3A43_uc003ury.1_Missense_Mutation_p.G177R|CYP3A43_uc003urz.1_Missense_Mutation_p.G177R|CYP3A43_uc003usa.1_RNA|CYP3A43_uc010lgi.1_Intron|CYP3A43_uc003usb.1_Nonsense_Mutation_p.W39*	NM_057095	NP_476436	Q9HB55	CP343_HUMAN	cytochrome P450, family 3, subfamily A,	177			Missing (in allele CYP3A43*2).		xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)|skin(1)	2	Esophageal squamous(72;0.0166)|Lung NSC(181;0.0211)|all_lung(186;0.0323)				Cetirizine(DB00341)|Doxycycline(DB00254)	CAGTTTCTTTGGGGCCTACAC	0.408													13	50					0	0	0.002450	0	0
AZGP1	563	broad.mit.edu	37	7	99564826	99564826	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:99564826C>T	uc003ush.2	-	4	741	c.697G>A	c.(697-699)GGG>AGG	p.G233R		NM_001185	NP_001176	P25311	ZA2G_HUMAN	alpha-2-glycoprotein 1, zinc	233	Ig-like C1-type.				antigen processing and presentation|cell adhesion|immune response|lipid catabolic process|negative regulation of cell proliferation	extracellular region|MHC class I protein complex	fatty acid binding|protein transmembrane transporter activity|ribonuclease activity			ovary(1)|central_nervous_system(1)	2	Esophageal squamous(72;0.0166)|Lung NSC(181;0.0211)|all_lung(186;0.0323)					TCAATTTTCCCTGGGTAGAAG	0.557													4	25					0	0	0.000602	0	0
ZCWPW1	55063	broad.mit.edu	37	7	99999545	99999545	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:99999545C>T	uc003uut.2	-	17	1839	c.1591G>A	c.(1591-1593)GAA>AAA	p.E531K	ZCWPW1_uc011kjq.1_Missense_Mutation_p.E411K|ZCWPW1_uc003uur.2_Intron|ZCWPW1_uc003uus.2_Intron|ZCWPW1_uc011kjr.1_Intron|ZCWPW1_uc011kjp.1_RNA	NM_017984	NP_060454	Q9H0M4	ZCPW1_HUMAN	zinc finger, CW type with PWWP domain 1	531							zinc ion binding				0	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					CCTTGGCCTTCTTTCCTTCCC	0.532													19	83					0	0	0.006122	0	0
LRCH4	4034	broad.mit.edu	37	7	100172796	100172796	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:100172796G>A	uc003uvj.2	-	18	2039	c.1986C>T	c.(1984-1986)TTC>TTT	p.F662F	uc003uvh.2_5'Flank|LRCH4_uc010lgz.2_RNA|LRCH4_uc003uvi.2_RNA|LRCH4_uc011kjw.1_3'UTR	NM_002319	NP_002310	O75427	LRCH4_HUMAN	leucine-rich repeats and calponin homology (CH)	662					nervous system development	PML body	protein binding			large_intestine(1)|ovary(1)	2	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					AGAAGACGACGAAGCCGCCCA	0.682													5	23					0	0	0.001168	0	0
TFR2	7036	broad.mit.edu	37	7	100238703	100238703	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:100238703G>A	uc003uvv.1	-	2	223	c.182C>T	c.(181-183)CCC>CTC	p.P61L	TFR2_uc003uvw.1_Missense_Mutation_p.P61L	NM_003227	NP_003218	Q9UP52	TFR2_HUMAN	transferrin receptor 2	61	Cytoplasmic (Potential).				cellular iron ion homeostasis|iron ion transport|proteolysis	cytoplasm|integral to plasma membrane	peptidase activity|transferrin receptor activity			ovary(1)|pancreas(1)	2	Lung NSC(181;0.0261)|all_lung(186;0.0392)|Esophageal squamous(72;0.0439)					AGAGCCCAGGGGCTCAGGGCC	0.547													9	11					0	0	0.004482	0	0
ACTL6B	51412	broad.mit.edu	37	7	100240948	100240948	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:100240948C>T	uc003uvy.2	-	14	1309	c.1202G>A	c.(1201-1203)GGC>GAC	p.G401D	TFR2_uc003uvv.1_5'Flank|TFR2_uc003uvw.1_5'Flank|ACTL6B_uc003uvx.1_Missense_Mutation_p.G192D|ACTL6B_uc003uvz.2_RNA	NM_016188	NP_057272	O94805	ACL6B_HUMAN	actin-like 6B	401					chromatin modification|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nBAF complex|SWI/SNF complex	ATP binding|protein binding|structural constituent of cytoskeleton			ovary(1)	1	Lung NSC(181;0.035)|all_lung(186;0.0509)|Esophageal squamous(72;0.0817)					CTGGAAAGTGCCCTGGGTGGA	0.622													18	31					0	0	0.008871	0	0
GIGYF1	64599	broad.mit.edu	37	7	100285673	100285673	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:100285673G>A	uc003uwg.1	-	2	1105	c.96C>T	c.(94-96)CCC>CCT	p.P32P		NM_022574	NP_072096	O75420	PERQ1_HUMAN	PERQ amino acid rich, with GYF domain 1	32										large_intestine(1)|central_nervous_system(1)	2	Lung NSC(181;0.035)|all_lung(186;0.0509)|Esophageal squamous(72;0.0817)					GCTTGTATTTGGGCATGGCAG	0.637													8	54					0	0	0.004482	0	0
EPO	2056	broad.mit.edu	37	7	100320615	100320615	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:100320615C>T	uc003uwi.2	+	5	622	c.441C>T	c.(439-441)TCC>TCT	p.S147S	EPO_uc011kkc.1_Silent_p.S146S	NM_000799	NP_000790	P01588	EPO_HUMAN	erythropoietin precursor	147					blood circulation|cellular hyperosmotic response|erythrocyte maturation|negative regulation of apoptosis|negative regulation of ion transmembrane transporter activity|negative regulation of sodium ion transport|positive regulation of cell proliferation|positive regulation of DNA replication|positive regulation of Ras protein signal transduction|positive regulation of transcription, DNA-dependent|positive regulation of tyrosine phosphorylation of Stat5 protein|signal transduction	extracellular space	erythropoietin receptor binding|eukaryotic cell surface binding|hormone activity			central_nervous_system(2)	2	Lung NSC(181;0.041)|all_lung(186;0.0581)				Darbepoetin alfa(DB00012)|Epoetin alfa(DB00016)	AAGCCATCTCCCCTCCAGATG	0.537													26	98					0	0	0.012213	0	0
ZAN	7455	broad.mit.edu	37	7	100348838	100348838	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:100348838G>A	uc003uwj.2	+	13	1720	c.1555G>A	c.(1555-1557)GCC>ACC	p.A519T	ZAN_uc003uwk.2_Missense_Mutation_p.A519T|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	519	MAM 3.|Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			AAGCAACACGGCCTCTGTGGT	0.522													10	14					0	0	0.013537	0	0
ZAN	7455	broad.mit.edu	37	7	100349948	100349948	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:100349948C>T	uc003uwj.2	+	14	2385	c.2220C>T	c.(2218-2220)ACC>ACT	p.T740T	ZAN_uc003uwk.2_Silent_p.T740T|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	740	66 X heptapeptide repeats (approximate) (mucin-like domain).|Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			AACCCACCACCCCCACAGAAA	0.517													8	30					0	0	0.003080	0	0
ZAN	7455	broad.mit.edu	37	7	100371412	100371412	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:100371412C>T	uc003uwj.2	+	31	5868	c.5703C>T	c.(5701-5703)ATC>ATT	p.I1901I	ZAN_uc003uwk.2_Silent_p.I1901I|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA|ZAN_uc011kke.1_5'UTR	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	1901	VWFC 3.|Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			ACAACAACATCACCTGCTTCC	0.622													8	10					0	0	0.006214	0	0
ZAN	7455	broad.mit.edu	37	7	100382394	100382394	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:100382394G>A	uc003uwj.2	+	37	6937	c.6772G>A	c.(6772-6774)GAA>AAA	p.E2258K	ZAN_uc003uwk.2_Missense_Mutation_p.E2258K|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA|ZAN_uc011kke.1_Missense_Mutation_p.E308K	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	2258	Extracellular (Potential).|TIL 4.				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			TGTGCTGAGTGAAGACAAGTG	0.612													6	16					0	0	0.001168	0	0
ZAN	7455	broad.mit.edu	37	7	100391855	100391855	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:100391855G>A	uc003uwj.2	+	45	8265	c.8100G>A	c.(8098-8100)GGG>GGA	p.G2700G	ZAN_uc003uwk.2_Intron|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA|ZAN_uc011kke.1_Silent_p.G648G	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	2700	VWFC 5.|Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			GCACCCTGGGGAACCACACCC	0.642													19	72					0	0	0.002780	0	0
SRRT	51593	broad.mit.edu	37	7	100479839	100479839	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:100479839C>T	uc003uwy.2	+	6	832	c.564C>T	c.(562-564)TTC>TTT	p.F188F	SRRT_uc010lhl.1_Silent_p.F188F|SRRT_uc003uxa.2_Silent_p.F188F|SRRT_uc003uwz.2_Silent_p.F188F	NM_015908	NP_056992	Q9BXP5	SRRT_HUMAN	arsenate resistance protein 2 isoform a	188					cell proliferation|primary miRNA processing|response to arsenic-containing substance	cytoplasm|nucleoplasm	protein binding			ovary(2)	2						AGGATTTCTTCCTGGCGCACA	0.592													11	30					0	0	0.010729	0	0
MUC17	140453	broad.mit.edu	37	7	100678106	100678106	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:100678106G>A	uc003uxp.1	+	3	3462	c.3409G>A	c.(3409-3411)GAA>AAA	p.E1137K	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	1137	Extracellular (Potential).|59 X approximate tandem repeats.|17.|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					CACTTCTACTGAAGCCAGTTC	0.532													84	220					0	0	0.014410	0	0
MUC17	140453	broad.mit.edu	37	7	100682112	100682112	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:100682112A>G	uc003uxp.1	+	3	7468	c.7415A>G	c.(7414-7416)GAG>GGG	p.E2472G	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	2472	Extracellular (Potential).|Ser-rich.|59 X approximate tandem repeats.|39.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					GTCAGTTCTGAGGCTGGCACC	0.522													68	186					0	0	0.014410	0	0
MUC17	140453	broad.mit.edu	37	7	100683171	100683171	+	Missense_Mutation	SNP	C	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:100683171C>A	uc003uxp.1	+	3	8527	c.8474C>A	c.(8473-8475)TCT>TAT	p.S2825Y	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	2825	Extracellular (Potential).|Ser-rich.|59 X approximate tandem repeats.|45.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					GTGGCCAGTTCTGAGGCTGGC	0.493													82	152					3.77845e-26	4.08567e-26	0.014410	1	0
MUC17	140453	broad.mit.edu	37	7	100683951	100683951	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:100683951C>T	uc003uxp.1	+	3	9307	c.9254C>T	c.(9253-9255)TCA>TTA	p.S3085L	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	3085	Extracellular (Potential).|Ser-rich.|50.|59 X approximate tandem repeats.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					GAAGTCAGTTCATCTCCTACA	0.522													66	185					0	0	0.014410	0	0
MUC17	140453	broad.mit.edu	37	7	100684188	100684188	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:100684188C>T	uc003uxp.1	+	3	9544	c.9491C>T	c.(9490-9492)ACT>ATT	p.T3164I	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	3164	Extracellular (Potential).|Ser-rich.|59 X approximate tandem repeats.|51.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					GAAGGAAGTACTCCATTAACA	0.493													61	167					0	0	0.014410	0	0
MUC17	140453	broad.mit.edu	37	7	100685723	100685723	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:100685723C>T	uc003uxp.1	+	3	11079	c.11026C>T	c.(11026-11028)CCT>TCT	p.P3676S	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	3676	Extracellular (Potential).|59.|59 X approximate tandem repeats.|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					CAGTTCATCTCCTGTGACTCC	0.522													45	95					0	0	0.014410	0	0
MUC17	140453	broad.mit.edu	37	7	100686280	100686280	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:100686280C>T	uc003uxp.1	+	3	11636	c.11583C>T	c.(11581-11583)GTC>GTT	p.V3861V	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	3861	Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					CTGCTGAAGTCACTACCATAC	0.488													12	63					0	0	0.013537	0	0
MUC17	140453	broad.mit.edu	37	7	100686975	100686975	+	Missense_Mutation	SNP	C	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:100686975C>A	uc003uxp.1	+	3	12331	c.12278C>A	c.(12277-12279)ACC>AAC	p.T4093N	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	4093	Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					ACCACCATGACCACCAGGACA	0.562													21	38					1.85244e-09	1.99294e-09	0.003330	1	0
MUC17	140453	broad.mit.edu	37	7	100686978	100686979	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:100686978_100686979CC>TT	uc003uxp.1	+	3	12334_12335	c.12281_12282CC>TT	c.(12280-12282)ACC>ATT	p.T4094I	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	4094	Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					ACCATGACCACCAGGACAAAAC	0.559													19	37					0	0	0.004672	0	0
MUC17	140453	broad.mit.edu	37	7	100699524	100699524	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:100699524C>T	uc003uxp.1	+	12	13466	c.13413C>T	c.(13411-13413)TCC>TCT	p.S4471S	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	4471	Cytoplasmic (Potential).					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					TCCAGCCCTCCTTGAGACACA	0.493													23	28					0	0	0.003330	0	0
TRIM56	81844	broad.mit.edu	37	7	100730624	100730624	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:100730624C>T	uc003uxq.2	+	3	262	c.31C>T	c.(31-33)CTG>TTG	p.L11L	TRIM56_uc003uxr.2_Silent_p.L11L	NM_030961	NP_112223	Q9BRZ2	TRI56_HUMAN	tripartite motif-containing 56	11					defense response to virus|interferon-beta production|protein K63-linked ubiquitination|response to type I interferon	cytoplasm	ubiquitin-protein ligase activity|zinc ion binding			kidney(1)|central_nervous_system(1)|skin(1)	3	Lung NSC(181;0.136)|all_lung(186;0.182)					GCCCTCCCTCCTGGAGGCCCT	0.612													50	84					0	0	0.014410	0	0
CLDN15	24146	broad.mit.edu	37	7	100880830	100880830	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:100880830G>A	uc003uyg.1	-	1	287	c.33C>T	c.(31-33)TTC>TTT	p.F11F	CLDN15_uc003uyh.1_Silent_p.F11F|CLDN15_uc003uyi.2_Silent_p.F11F	NM_014343	NP_055158	P56746	CLD15_HUMAN	claudin 15	11	Helical; (Potential).				calcium-independent cell-cell adhesion|tight junction assembly	integral to membrane|tight junction	identical protein binding|structural molecule activity			ovary(1)	1	Lung NSC(181;0.168)|all_lung(186;0.215)					CAGTTGCCATGAAGAAGCCAA	0.607													5	20					0	0	0.000602	0	0
ORAI2	80228	broad.mit.edu	37	7	102087224	102087224	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:102087224G>A	uc010lhz.1	+	4	725	c.490G>A	c.(490-492)GAG>AAG	p.E164K	ORAI2_uc003uzj.2_Missense_Mutation_p.E164K|ORAI2_uc003uzk.2_Missense_Mutation_p.E164K|ORAI2_uc011kks.1_Missense_Mutation_p.E87K	NM_001126340	NP_001119812	Q96SN7	ORAI2_HUMAN	ORAI calcium release-activated calcium modulator	164	Helical; (Potential).					integral to membrane	protein binding			ovary(1)|kidney(1)	2						CTTCCTGGCCGAGGTGGTGCT	0.677													24	106					0	0	0.003330	0	0
SLC26A5	375611	broad.mit.edu	37	7	103018973	103018973	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:103018973C>T	uc003vbz.2	-	17	1941	c.1705G>A	c.(1705-1707)GGA>AGA	p.G569R	SLC26A5_uc003vbt.1_Missense_Mutation_p.G569R|SLC26A5_uc003vbu.1_Intron|SLC26A5_uc003vbv.1_Intron|SLC26A5_uc003vbw.2_RNA|SLC26A5_uc003vbx.2_Missense_Mutation_p.G537R|SLC26A5_uc003vby.2_RNA|SLC26A5_uc010liy.2_Intron	NM_198999	NP_945350	P58743	S26A5_HUMAN	prestin isoform a	569	Cytoplasmic (Potential).|STAS.				regulation of cell shape|sensory perception of sound	integral to membrane	secondary active sulfate transmembrane transporter activity			ovary(1)	1						CTCCTTGCTCCCATGATGACT	0.493													30	71					0	0	0.003271	0	0
SLC26A5	375611	broad.mit.edu	37	7	103050852	103050852	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:103050852C>T	uc003vbz.2	-	7	951	c.715G>A	c.(715-717)GGA>AGA	p.G239R	SLC26A5_uc003vbt.1_Missense_Mutation_p.G239R|SLC26A5_uc003vbu.1_Missense_Mutation_p.G239R|SLC26A5_uc003vbv.1_Missense_Mutation_p.G239R|SLC26A5_uc003vbw.2_RNA|SLC26A5_uc003vbx.2_Missense_Mutation_p.G239R|SLC26A5_uc003vby.2_RNA|SLC26A5_uc010liy.2_RNA	NM_198999	NP_945350	P58743	S26A5_HUMAN	prestin isoform a	239	Extracellular (Potential).				regulation of cell shape|sensory perception of sound	integral to membrane	secondary active sulfate transmembrane transporter activity			ovary(1)	1						GAAAAGATTCCACTGTACCGC	0.433													14	37					0	0	0.003163	0	0
SLC26A5	375611	broad.mit.edu	37	7	103061245	103061245	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:103061245C>T	uc003vbz.2	-	4	468	c.232G>A	c.(232-234)GAA>AAA	p.E78K	SLC26A5_uc003vbt.1_Missense_Mutation_p.E78K|SLC26A5_uc003vbu.1_Missense_Mutation_p.E78K|SLC26A5_uc003vbv.1_Missense_Mutation_p.E78K|SLC26A5_uc003vbw.2_RNA|SLC26A5_uc003vbx.2_Missense_Mutation_p.E78K|SLC26A5_uc003vby.2_RNA|SLC26A5_uc010liy.2_RNA	NM_198999	NP_945350	P58743	S26A5_HUMAN	prestin isoform a	78	Cytoplasmic (Potential).				regulation of cell shape|sensory perception of sound	integral to membrane	secondary active sulfate transmembrane transporter activity			ovary(1)	1						AACACATATTCCTTGAATTTG	0.413													22	61					0	0	0.003954	0	0
RELN	5649	broad.mit.edu	37	7	103290744	103290744	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:103290744C>T	uc003vca.2	-	16	2139	c.1979G>A	c.(1978-1980)GGA>GAA	p.G660E	RELN_uc010liz.2_Missense_Mutation_p.G660E	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	660					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		CCACATGTTTCCAAGGATTGG	0.443													27	57					0	0	0.008361	0	0
CDHR3	222256	broad.mit.edu	37	7	105636705	105636705	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:105636705C>T	uc003vdl.3	+	6	726	c.618C>T	c.(616-618)CTC>CTT	p.L206L	CDHR3_uc003vdk.2_Intron|CDHR3_uc011kls.1_Intron|CDHR3_uc003vdm.3_Silent_p.L193L|CDHR3_uc011klt.1_Silent_p.L118L	NM_152750	NP_689963	Q6ZTQ4	CDHR3_HUMAN	hypothetical protein LOC222256 precursor	206	Cadherin 2.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1						GTTTCCATCTCATCGTGGAGG	0.527													3	8					0	0	0.004672	0	0
SLC26A4	5172	broad.mit.edu	37	7	107303820	107303820	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:107303820G>A	uc003vep.2	+	3	468	c.244G>A	c.(244-246)GAA>AAA	p.E82K	LOC286002_uc003veo.3_5'Flank	NM_000441	NP_000432	O43511	S26A4_HUMAN	pendrin	82	Cytoplasmic (Potential).				regulation of pH|regulation of protein localization|sensory perception of sound	apical plasma membrane|integral to membrane	chloride transmembrane transporter activity|inorganic anion exchanger activity|iodide transmembrane transporter activity|secondary active sulfate transmembrane transporter activity			ovary(3)|central_nervous_system(2)|skin(2)	7						CCGAGTCAAGGAATGGCTGCT	0.488									Pendred_syndrome				17	69					0	0	0.006122	0	0
SLC26A3	1811	broad.mit.edu	37	7	107430122	107430122	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:107430122C>T	uc003ver.2	-	6	793	c.582G>A	c.(580-582)GGG>GGA	p.G194G	SLC26A3_uc003ves.2_Silent_p.G159G	NM_000111	NP_000102	P40879	S26A3_HUMAN	solute carrier family 26, member 3	194	Helical; (Potential).				excretion	integral to membrane|membrane fraction	inorganic anion exchanger activity|secondary active sulfate transmembrane transporter activity|sequence-specific DNA binding transcription factor activity|transcription cofactor activity			ovary(3)|skin(1)	4						TCCGCAGAATCCCAAAAGCCA	0.418													4	13					0	0	0.000602	0	0
SLC26A3	1811	broad.mit.edu	37	7	107431616	107431616	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:107431616G>A	uc003ver.2	-	5	658	c.447C>T	c.(445-447)GTC>GTT	p.V149V	SLC26A3_uc003ves.2_Silent_p.V114V	NM_000111	NP_000102	P40879	S26A3_HUMAN	solute carrier family 26, member 3	149					excretion	integral to membrane|membrane fraction	inorganic anion exchanger activity|secondary active sulfate transmembrane transporter activity|sequence-specific DNA binding transcription factor activity|transcription cofactor activity			ovary(3)|skin(1)	4						TGCGATCTGGGACTGCTTTTG	0.488													34	49					0	0	0.003271	0	0
LAMB1	3912	broad.mit.edu	37	7	107600245	107600245	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:107600245G>A	uc003vew.2	-	19	2684	c.2349C>T	c.(2347-2349)TCC>TCT	p.S783S	LAMB1_uc003vev.2_Silent_p.S807S|LAMB1_uc003vex.2_Silent_p.S783S	NM_002291	NP_002282	P07942	LAMB1_HUMAN	laminin, beta 1 precursor	783	Laminin EGF-like 6.				axon guidance|odontogenesis|positive regulation of cell migration|positive regulation of epithelial cell proliferation|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-2 complex|laminin-8 complex|perinuclear region of cytoplasm	extracellular matrix structural constituent			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	8					Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GATCACACACGGAACTTAACG	0.572													4	18					0	0	0.009096	0	0
LAMB1	3912	broad.mit.edu	37	7	107616285	107616285	+	Silent	SNP	A	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:107616285A>G	uc003vew.2	-	10	1373	c.1038T>C	c.(1036-1038)TTT>TTC	p.F346F	LAMB1_uc003vev.2_Silent_p.F370F|LAMB1_uc003vex.2_Silent_p.F346F|LAMB1_uc010ljn.1_Silent_p.F432F	NM_002291	NP_002282	P07942	LAMB1_HUMAN	laminin, beta 1 precursor	346	Laminin EGF-like 2.				axon guidance|odontogenesis|positive regulation of cell migration|positive regulation of epithelial cell proliferation|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-2 complex|laminin-8 complex|perinuclear region of cytoplasm	extracellular matrix structural constituent			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	8					Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	CAGCCATGTCAAAGTGACAAG	0.507													9	30					0	0	0.004482	0	0
DOCK4	9732	broad.mit.edu	37	7	111379197	111379197	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:111379197G>A	uc003vfx.2	-	48	5467	c.5198C>T	c.(5197-5199)CCT>CTT	p.P1733L	DOCK4_uc011kml.1_Missense_Mutation_p.P614L|DOCK4_uc011kmm.1_Missense_Mutation_p.P640L|DOCK4_uc003vfw.2_Missense_Mutation_p.P1183L|DOCK4_uc003vfy.2_Missense_Mutation_p.P1778L|DOCK4_uc003vfv.2_Missense_Mutation_p.P46L	NM_014705	NP_055520	Q8N1I0	DOCK4_HUMAN	dedicator of cytokinesis 4	1733	Ser-rich.		P -> A.		cell chemotaxis	cytosol|endomembrane system|membrane|stereocilium	GTP binding|guanyl-nucleotide exchange factor activity|PDZ domain binding|Rac GTPase activator activity|Rac GTPase binding|receptor tyrosine kinase binding|SH3 domain binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)	4		Acute lymphoblastic leukemia(1;0.0441)				TACCTGCGAAGGCTCCACAGG	0.468													27	46					0	0	0.008361	0	0
PPP1R3A	5506	broad.mit.edu	37	7	113518020	113518020	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:113518020C>T	uc010ljy.1	-	4	3158	c.3127G>A	c.(3127-3129)GAA>AAA	p.E1043K		NM_002711	NP_002702	Q16821	PPR3A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	1043					glycogen metabolic process	integral to membrane				lung(9)|ovary(9)|pancreas(7)|skin(6)|breast(2)|prostate(1)	34						GATTCCTTTTCACCTGAAGTG	0.378													40	89					0	0	0.014410	0	0
PPP1R3A	5506	broad.mit.edu	37	7	113518037	113518037	+	Missense_Mutation	SNP	G	A	A	rs145569602		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:113518037G>A	uc010ljy.1	-	4	3141	c.3110C>T	c.(3109-3111)TCA>TTA	p.S1037L		NM_002711	NP_002702	Q16821	PPR3A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	1037					glycogen metabolic process	integral to membrane				lung(9)|ovary(9)|pancreas(7)|skin(6)|breast(2)|prostate(1)	34						AGTGTATAGTGATTGCCCAGA	0.393													20	94					0	0	0.012319	0	0
PPP1R3A	5506	broad.mit.edu	37	7	113518865	113518865	+	Missense_Mutation	SNP	C	T	T	rs62001880	byFrequency	TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:113518865C>T	uc010ljy.1	-	4	2313	c.2282G>A	c.(2281-2283)CGA>CAA	p.R761Q		NM_002711	NP_002702	Q16821	PPR3A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	761					glycogen metabolic process	integral to membrane				lung(9)|ovary(9)|pancreas(7)|skin(6)|breast(2)|prostate(1)	34						CCTGTCACTTCGTGCTGTCTC	0.413													29	57					0	0	0.012213	0	0
PPP1R3A	5506	broad.mit.edu	37	7	113519169	113519169	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:113519169C>T	uc010ljy.1	-	4	2009	c.1978G>A	c.(1978-1980)GAA>AAA	p.E660K		NM_002711	NP_002702	Q16821	PPR3A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	660					glycogen metabolic process	integral to membrane				lung(9)|ovary(9)|pancreas(7)|skin(6)|breast(2)|prostate(1)	34						CCCTGACTTTCCAGAACATTC	0.368													23	89					0	0	0.014323	0	0
PPP1R3A	5506	broad.mit.edu	37	7	113519312	113519312	+	Missense_Mutation	SNP	C	T	T	rs76910192	byFrequency	TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:113519312C>T	uc010ljy.1	-	4	1866	c.1835G>A	c.(1834-1836)GGG>GAG	p.G612E		NM_002711	NP_002702	Q16821	PPR3A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	612					glycogen metabolic process	integral to membrane		p.G612R(1)		lung(9)|ovary(9)|pancreas(7)|skin(6)|breast(2)|prostate(1)	34						ACCAGTTATCCCTCCTAAAGC	0.393													5	92					0	0	0.000602	0	0
PPP1R3A	5506	broad.mit.edu	37	7	113519874	113519874	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:113519874C>T	uc010ljy.1	-	4	1304	c.1273G>A	c.(1273-1275)GAT>AAT	p.D425N		NM_002711	NP_002702	Q16821	PPR3A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	425					glycogen metabolic process	integral to membrane				lung(9)|ovary(9)|pancreas(7)|skin(6)|breast(2)|prostate(1)	34						ACTAGTTCATCACTACTAGTA	0.423													38	53					0	0	0.005524	0	0
PPP1R3A	5506	broad.mit.edu	37	7	113558648	113558648	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:113558648G>A	uc010ljy.1	-	1	435	c.404C>T	c.(403-405)TCT>TTT	p.S135F		NM_002711	NP_002702	Q16821	PPR3A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	135	CBM21.				glycogen metabolic process	integral to membrane				lung(9)|ovary(9)|pancreas(7)|skin(6)|breast(2)|prostate(1)	34						CCCAAGAAGAGACTCAGTTGA	0.363													15	48					0	0	0.004990	0	0
TES	26136	broad.mit.edu	37	7	115889084	115889084	+	Missense_Mutation	SNP	C	T	T	rs142430563		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:115889084C>T	uc003vho.2	+	3	305	c.124C>T	c.(124-126)CGT>TGT	p.R42C	TES_uc011kmx.1_Missense_Mutation_p.R42C|TES_uc011kmy.1_Intron|TES_uc010lka.1_Missense_Mutation_p.R33C|TES_uc003vhp.2_Missense_Mutation_p.R33C	NM_015641	NP_056456	Q9UGI8	TES_HUMAN	testin isoform 1	42	Cys-rich.				negative regulation of cell proliferation	cytoplasm|focal adhesion|nucleus|protein complex	zinc ion binding				0	Lung NSC(10;0.0137)|all_lung(10;0.0148)	Breast(660;0.0602)	STAD - Stomach adenocarcinoma(10;0.00878)			AAAAATATGTCGTAACTGCAA	0.313													5	9					0	0	0.001168	0	0
MET	4233	broad.mit.edu	37	7	116380952	116380952	+	Missense_Mutation	SNP	C	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:116380952C>A	uc003vij.2	+	5	1761	c.1574C>A	c.(1573-1575)TCC>TAC	p.S525Y	MET_uc010lkh.2_Missense_Mutation_p.S525Y|MET_uc011knc.1_Missense_Mutation_p.S525Y|MET_uc011knd.1_Missense_Mutation_p.S525Y|MET_uc011kne.1_Intron|MET_uc011knf.1_Missense_Mutation_p.S525Y|MET_uc011kng.1_Missense_Mutation_p.S525Y|MET_uc011knh.1_Missense_Mutation_p.S525Y|MET_uc011kni.1_Missense_Mutation_p.S525Y|MET_uc011knj.1_Missense_Mutation_p.S95Y|MET_uc011knb.1_Missense_Mutation_p.S525Y	NM_000245	NP_000236	P08581	MET_HUMAN	met proto-oncogene isoform b precursor	525	Extracellular (Potential).				axon guidance|cell proliferation	basal plasma membrane|integral to plasma membrane	ATP binding|hepatocyte growth factor receptor activity|protein binding			upper_aerodigestive_tract(63)|lung(41)|kidney(18)|NS(10)|ovary(5)|thyroid(4)|central_nervous_system(4)|stomach(3)|liver(3)|pleura(2)|large_intestine(2)|breast(2)|testis(1)|skin(1)	159	all_cancers(3;1.25e-07)|all_epithelial(6;4.07e-08)|Lung NSC(10;0.00108)|all_lung(10;0.00125)	Ovarian(593;0.133)	GBM - Glioblastoma multiforme(2;2.31e-07)|all cancers(2;0.000419)|STAD - Stomach adenocarcinoma(10;0.000512)			CATTTCCAGTCCTGCAGTCAA	0.517			Mis		papillary renal|head-neck squamous cell 	papillary renal			Hereditary_Papillary_Renal_Carcinoma_(type_1)				31	100					7.01153e-11	7.55746e-11	0.007291	1	0
MET	4233	broad.mit.edu	37	7	116411553	116411553	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:116411553G>A	uc003vij.2	+	13	2919	c.2732G>A	c.(2731-2733)TGG>TAG	p.W911*	MET_uc010lkh.2_Nonsense_Mutation_p.W929*|MET_uc011knj.1_Nonsense_Mutation_p.W481*	NM_000245	NP_000236	P08581	MET_HUMAN	met proto-oncogene isoform b precursor	911	Extracellular (Potential).				axon guidance|cell proliferation	basal plasma membrane|integral to plasma membrane	ATP binding|hepatocyte growth factor receptor activity|protein binding			upper_aerodigestive_tract(63)|lung(41)|kidney(18)|NS(10)|ovary(5)|thyroid(4)|central_nervous_system(4)|stomach(3)|liver(3)|pleura(2)|large_intestine(2)|breast(2)|testis(1)|skin(1)	159	all_cancers(3;1.25e-07)|all_epithelial(6;4.07e-08)|Lung NSC(10;0.00108)|all_lung(10;0.00125)	Ovarian(593;0.133)	GBM - Glioblastoma multiforme(2;2.31e-07)|all cancers(2;0.000419)|STAD - Stomach adenocarcinoma(10;0.000512)			CATTTTTAGTGGAAGCAAGCA	0.368			Mis		papillary renal|head-neck squamous cell 	papillary renal			Hereditary_Papillary_Renal_Carcinoma_(type_1)				10	62					0	0	0.006214	0	0
MET	4233	broad.mit.edu	37	7	116418907	116418907	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:116418907C>T	uc003vij.2	+	17	3605	c.3418C>T	c.(3418-3420)CTC>TTC	p.L1140F	MET_uc010lkh.2_Missense_Mutation_p.L1158F|MET_uc011knj.1_Missense_Mutation_p.L710F	NM_000245	NP_000236	P08581	MET_HUMAN	met proto-oncogene isoform b precursor	1140	Protein kinase.|Cytoplasmic (Potential).				axon guidance|cell proliferation	basal plasma membrane|integral to plasma membrane	ATP binding|hepatocyte growth factor receptor activity|protein binding			upper_aerodigestive_tract(63)|lung(41)|kidney(18)|NS(10)|ovary(5)|thyroid(4)|central_nervous_system(4)|stomach(3)|liver(3)|pleura(2)|large_intestine(2)|breast(2)|testis(1)|skin(1)	159	all_cancers(3;1.25e-07)|all_epithelial(6;4.07e-08)|Lung NSC(10;0.00108)|all_lung(10;0.00125)	Ovarian(593;0.133)	GBM - Glioblastoma multiforme(2;2.31e-07)|all cancers(2;0.000419)|STAD - Stomach adenocarcinoma(10;0.000512)			TCCCAATGTCCTCTCGCTCCT	0.463			Mis		papillary renal|head-neck squamous cell 	papillary renal			Hereditary_Papillary_Renal_Carcinoma_(type_1)				17	64					0	0	0.004990	0	0
WNT2	7472	broad.mit.edu	37	7	116937698	116937698	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:116937698G>A	uc003viz.2	-	4	1121	c.821C>T	c.(820-822)TCT>TTT	p.S274F	WNT2_uc003vja.2_Missense_Mutation_p.S178F	NM_003391	NP_003382	P09544	WNT2_HUMAN	wingless-type MMTV integration site family	274					atrial cardiac muscle tissue morphogenesis|canonical Wnt receptor signaling pathway|cardiac epithelial to mesenchymal transition|cellular response to retinoic acid|cellular response to transforming growth factor beta stimulus|dorsal/ventral axis specification|iris morphogenesis|labyrinthine layer blood vessel development|lens development in camera-type eye|lung induction|mammary gland epithelium development|neuron differentiation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cardiac muscle cell proliferation|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of fibroblast proliferation|positive regulation of mesenchymal cell proliferation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|Wnt receptor signaling pathway, calcium modulating pathway	cytoplasm|extracellular space|proteinaceous extracellular matrix	cytokine activity|frizzled binding|frizzled-2 binding|signal transducer activity			breast(2)|central_nervous_system(2)|ovary(1)|lung(1)|skin(1)	7	all_epithelial(6;2.24e-06)|Lung NSC(10;0.000936)|all_lung(10;0.00109)		STAD - Stomach adenocarcinoma(10;0.000512)	LUSC - Lung squamous cell carcinoma(290;0.133)		GTAGTCTGGAGAATTCTCAAA	0.413													22	36					0	0	0.003954	0	0
CTTNBP2	83992	broad.mit.edu	37	7	117400742	117400742	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:117400742C>T	uc003vjf.2	-	10	3011	c.2919G>A	c.(2917-2919)AGG>AGA	p.R973R		NM_033427	NP_219499	Q8WZ74	CTTB2_HUMAN	cortactin binding protein 2	973										ovary(4)|central_nervous_system(1)	5	Lung NSC(10;0.0018)|all_lung(10;0.002)			LUSC - Lung squamous cell carcinoma(290;0.133)		CCACTGAAATCCTTAAGGGTA	0.328													12	52					0	0	0.013537	0	0
ANKRD7	56311	broad.mit.edu	37	7	117876137	117876137	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:117876137C>T	uc003vji.2	+	4	684	c.511C>T	c.(511-513)CCA>TCA	p.P171S		NM_019644	NP_062618	Q92527	ANKR7_HUMAN	ankyrin repeat domain 7	171	ANK 4.				male gonad development						0						TAACAATAATCCAAAAATGGT	0.274													8	79					0	0	0.006214	0	0
KCND2	3751	broad.mit.edu	37	7	119915245	119915245	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:119915245T>C	uc003vjj.1	+	1	1524	c.559T>C	c.(559-561)TTC>CTC	p.F187L		NM_012281	NP_036413	Q9NZV8	KCND2_HUMAN	potassium voltage-gated channel, Shal-related	187	Helical; Name=Segment S1; (Potential).				regulation of action potential|synaptic transmission	cell surface|dendritic spine	metal ion binding			ovary(2)|central_nervous_system(2)|skin(1)	5	all_neural(327;0.117)					GGCCCTGGTGTTCTACTATGT	0.582													10	29					0	0	0.006214	0	0
C7orf58	79974	broad.mit.edu	37	7	120740016	120740016	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:120740016C>T	uc003vjq.3	+	7	1233	c.786C>T	c.(784-786)ATC>ATT	p.I262I	C7orf58_uc003vjr.1_Silent_p.I262I|C7orf58_uc003vjs.3_Silent_p.I262I|C7orf58_uc003vjt.3_Silent_p.I42I|C7orf58_uc010lkk.1_Silent_p.I42I	NM_024913	NP_079189	A4D0V7	CG058_HUMAN	hypothetical protein LOC79974 isoform 1	262				I -> T (in Ref. 3; CAD89961).		endoplasmic reticulum				ovary(4)|large_intestine(2)|skin(2)|pancreas(1)	9	all_neural(327;0.117)					ATGAAACAATCTTTCGAGCCG	0.393													10	18					0	0	0.013537	0	0
FEZF1	389549	broad.mit.edu	37	7	121944266	121944266	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:121944266G>A	uc003vkd.2	-	1	300	c.226C>T	c.(226-228)CCC>TCC	p.P76S	FEZF1_uc003vkc.2_Missense_Mutation_p.P76S|uc010lko.1_RNA|uc003vkf.1_5'Flank	NM_001024613	NP_001019784	A0PJY2	FEZF1_HUMAN	FEZ family zinc finger 1 isoform 1	76					cell differentiation|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|breast(1)	3						GGCACGAAGGGGATCATGCAG	0.572													15	36					0	0	0.002450	0	0
CADPS2	93664	broad.mit.edu	37	7	122033545	122033545	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:122033545G>A	uc010lkp.2	-	20	3001	c.2838C>T	c.(2836-2838)ATC>ATT	p.I946I	CADPS2_uc011knx.1_Silent_p.I321I|CADPS2_uc003vkg.3_Silent_p.I640I|CADPS2_uc010lkq.2_Silent_p.I940I	NM_017954	NP_060424	Q86UW7	CAPS2_HUMAN	Ca2+-dependent activator protein for secretion 2	946	Interaction with DRD2.|MHD1.				exocytosis|protein transport	cell junction|cytoplasmic vesicle membrane|synapse	lipid binding|metal ion binding			ovary(1)|central_nervous_system(1)	2						TTGACTGGGCGATGGAAGACT	0.458													31	61					0	0	0.009535	0	0
CADPS2	93664	broad.mit.edu	37	7	122221237	122221237	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:122221237C>T	uc010lkp.2	-	7	1494	c.1331G>A	c.(1330-1332)GGA>GAA	p.G444E	CADPS2_uc003vkg.3_Missense_Mutation_p.G144E|CADPS2_uc010lkq.2_Missense_Mutation_p.G444E	NM_017954	NP_060424	Q86UW7	CAPS2_HUMAN	Ca2+-dependent activator protein for secretion 2	444	C2.				exocytosis|protein transport	cell junction|cytoplasmic vesicle membrane|synapse	lipid binding|metal ion binding			ovary(1)|central_nervous_system(1)	2						ACTCACCCTTCCCAGTTCTTT	0.453													38	55					0	0	0.009718	0	0
RNF133	168433	broad.mit.edu	37	7	122338482	122338482	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:122338482A>G	uc003vkj.1	-	1	727	c.491T>C	c.(490-492)TTC>TCC	p.F164S	CADPS2_uc010lkp.2_Intron|CADPS2_uc010lkq.2_Intron	NM_139175	NP_631914	Q8WVZ7	RN133_HUMAN	ring finger protein 133	164	PA.					endoplasmic reticulum membrane|integral to membrane	ligase activity|zinc ion binding			skin(1)	1						AATTAAATGGAAAATTTCCGT	0.423													14	39					0	0	0.004007	0	0
RNF148	378925	broad.mit.edu	37	7	122342631	122342631	+	Missense_Mutation	SNP	C	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:122342631C>G	uc003vkk.1	-	1	391	c.174G>C	c.(172-174)GAG>GAC	p.E58D	CADPS2_uc010lkp.2_Intron|CADPS2_uc010lkq.2_Intron|RNF148_uc010lkr.1_Intron	NM_198085	NP_932351	Q8N7C7	RN148_HUMAN	ring finger protein 148 precursor	58						integral to membrane	zinc ion binding				0						ACACTCCACTCTCTCCTAATT	0.448													8	26					0	0	0.004482	0	0
TAS2R16	50833	broad.mit.edu	37	7	122634824	122634824	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:122634824C>T	uc003vkl.1	-	1	931	c.865G>A	c.(865-867)GGA>AGA	p.G289R		NM_016945	NP_058641	Q9NYV7	T2R16_HUMAN	taste receptor T2R16	289	Cytoplasmic (Potential).				detection of chemical stimulus involved in sensory perception of bitter taste	endoplasmic reticulum|external side of plasma membrane|trans-Golgi network	bitter taste receptor activity|protein binding			ovary(1)|skin(1)	2						TAGCACTTTCCCTTTAGAATC	0.418													37	67					0	0	0.004289	0	0
IQUB	154865	broad.mit.edu	37	7	123152009	123152009	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:123152009G>A	uc003vkn.2	-	2	963	c.386C>T	c.(385-387)TCT>TTT	p.S129F	IQUB_uc003vko.2_Missense_Mutation_p.S129F|IQUB_uc010lkt.2_RNA|IQUB_uc003vkp.1_Missense_Mutation_p.S129F|IQUB_uc003vkq.2_Missense_Mutation_p.S129F	NM_178827	NP_849149	Q8NA54	IQUB_HUMAN	IQ motif and ubiquitin domain containing	129										ovary(3)|large_intestine(1)	4						TGTTGCTAGAGAATCTTCCAC	0.343													7	29					0	0	0.001984	0	0
ASB15	142685	broad.mit.edu	37	7	123267301	123267301	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:123267301C>T	uc003vku.1	+	9	1127	c.835C>T	c.(835-837)CCT>TCT	p.P279S	ASB15_uc003vkv.1_Missense_Mutation_p.P279S|ASB15_uc003vkw.1_Missense_Mutation_p.P279S	NM_080928	NP_563616	Q8WXK1	ASB15_HUMAN	ankyrin repeat and SOCS box-containing 15	279					intracellular signal transduction					skin(2)|lung(1)	3						AGGACATCTTCCTATACACCG	0.433													5	32					0	0	0.000602	0	0
ASB15	142685	broad.mit.edu	37	7	123269336	123269336	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:123269336G>A	uc003vku.1	+	10	1580	c.1288G>A	c.(1288-1290)GTA>ATA	p.V430I	ASB15_uc003vkw.1_Missense_Mutation_p.V430I	NM_080928	NP_563616	Q8WXK1	ASB15_HUMAN	ankyrin repeat and SOCS box-containing 15	430	ANK 9.				intracellular signal transduction					skin(2)|lung(1)	3						AAACGACGAGGTAATGCTGAG	0.423													46	67					0	0	0.014410	0	0
WASL	8976	broad.mit.edu	37	7	123334784	123334784	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:123334784C>T	uc003vkz.2	-	8	1139	c.811G>A	c.(811-813)GAA>AAA	p.E271K		NM_003941	NP_003932	O00401	WASL_HUMAN	Wiskott-Aldrich syndrome gene-like protein	271					actin polymerization or depolymerization|axon guidance|cellular component movement|nitric oxide metabolic process|protein complex assembly|regulation of nitric-oxide synthase activity|regulation of transcription, DNA-dependent|transcription, DNA-dependent	actin cytoskeleton|cytosol|nucleolus|plasma membrane	actin binding|small GTPase regulator activity				0						CTCCGCAGTTCATTTTTAACA	0.343													14	65					0	0	0.001855	0	0
HYAL4	23553	broad.mit.edu	37	7	123516852	123516852	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:123516852G>A	uc003vlc.2	+	5	1727	c.1089G>A	c.(1087-1089)GGG>GGA	p.G363G	HYAL4_uc011knz.1_3'UTR	NM_012269	NP_036401	Q2M3T9	HYAL4_HUMAN	hyaluronoglucosaminidase 4	363	Extracellular (Potential).				fusion of sperm to egg plasma membrane|glycosaminoglycan catabolic process	integral to membrane	hyalurononglucosaminidase activity			skin(1)	1						CTGATTTAGGGAGCTACATAG	0.458													9	50					0	0	0.008291	0	0
SPAM1	6677	broad.mit.edu	37	7	123594008	123594008	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:123594008G>A	uc003vld.2	+	4	786	c.384G>A	c.(382-384)AAG>AAA	p.K128K	SPAM1_uc003vle.2_Silent_p.K128K|SPAM1_uc011koa.1_5'Flank|SPAM1_uc003vlf.3_Silent_p.K128K|SPAM1_uc010lku.2_Silent_p.K128K	NM_153189	NP_694859	P38567	HYALP_HUMAN	sperm adhesion molecule 1 isoform 2	128					binding of sperm to zona pellucida|carbohydrate metabolic process|cell adhesion|fusion of sperm to egg plasma membrane	anchored to membrane|plasma membrane	hyalurononglucosaminidase activity			ovary(3)|kidney(1)	4					Hyaluronidase(DB00070)	ACAAAGCTAAGAAAGACATTA	0.413													6	47					0	0	0.001168	0	0
SPAM1	6677	broad.mit.edu	37	7	123594434	123594435	+	Missense_Mutation	DNP	TC	AT	AT	rs141109529		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:123594434_123594435TC>AT	uc003vld.2	+	4	1212_1213	c.810_811TC>AT	c.(808-813)TCTCCT>TCATCT	p.P271S	SPAM1_uc003vle.2_Missense_Mutation_p.P271S|SPAM1_uc011koa.1_5'Flank|SPAM1_uc003vlf.3_Missense_Mutation_p.P271S|SPAM1_uc010lku.2_Missense_Mutation_p.P271S	NM_153189	NP_694859	P38567	HYALP_HUMAN	sperm adhesion molecule 1 isoform 2	271					binding of sperm to zona pellucida|carbohydrate metabolic process|cell adhesion|fusion of sperm to egg plasma membrane	anchored to membrane|plasma membrane	hyalurononglucosaminidase activity			ovary(3)|kidney(1)	4					Hyaluronidase(DB00070)	CTCAGCAGTCTCCTGTAGCTGC	0.416													24	47					0	0	0.004672	0	0
GRM8	2918	broad.mit.edu	37	7	126173045	126173045	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:126173045G>A	uc003vlr.2	-	8	2702	c.2391C>T	c.(2389-2391)TTC>TTT	p.F797F	GRM8_uc003vls.2_RNA|GRM8_uc011kof.1_RNA|GRM8_uc003vlt.2_Silent_p.F797F|GRM8_uc010lkz.1_RNA	NM_000845	NP_000836	O00222	GRM8_HUMAN	glutamate receptor, metabotropic 8 isoform a	797	Helical; Name=6; (Potential).				negative regulation of cAMP biosynthetic process|sensory perception of smell|visual perception	integral to plasma membrane				lung(15)|ovary(5)|pancreas(1)|breast(1)|skin(1)	23		Prostate(267;0.186)			L-Glutamic Acid(DB00142)	AGATGGGGATGAAAGCTAACC	0.393										HNSCC(24;0.065)			9	26					0	0	0.013537	0	0
LRRC4	64101	broad.mit.edu	37	7	127670245	127670245	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:127670245C>T	uc003vmk.2	-	2	586	c.449G>A	c.(448-450)CGG>CAG	p.R150Q	SND1_uc003vmi.2_Intron|SND1_uc010lle.2_Intron	NM_022143	NP_071426	Q9HBW1	LRRC4_HUMAN	leucine rich repeat containing 4 precursor	150	LRR 4.|Extracellular (Potential).					cell junction|integral to membrane|postsynaptic membrane				large_intestine(1)|breast(1)|central_nervous_system(1)|pancreas(1)	4				Lung(243;0.124)		CCAGAGCTCCCGCAGCTTGGA	0.612													21	49					0	0	0.012319	0	0
SND1	27044	broad.mit.edu	37	7	127714631	127714631	+	Silent	SNP	C	T	T	rs138799870	byFrequency	TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:127714631C>T	uc003vmi.2	+	17	2083	c.1857C>T	c.(1855-1857)TCC>TCT	p.S619S	SND1_uc010lle.2_Silent_p.S272S	NM_014390	NP_055205	Q7KZF4	SND1_HUMAN	staphylococcal nuclease domain containing 1	619	TNase-like 4.				gene silencing by RNA|interspecies interaction between organisms|regulation of transcription, DNA-dependent|transcription, DNA-dependent	melanosome|nucleus|RNA-induced silencing complex	nuclease activity|nucleic acid binding|protein binding|transcription cofactor activity			ovary(2)|central_nervous_system(1)	3						CCAACCTGTCCGTCCTGCTGG	0.617													11	20					0	0	0.010729	0	0
CALU	813	broad.mit.edu	37	7	128409143	128409143	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:128409143C>T	uc003vns.2	+	7	1022	c.870C>T	c.(868-870)ATC>ATT	p.I290I	CALU_uc003vnq.2_Silent_p.I290I|CALU_uc003vnr.2_Silent_p.I290I	NM_001130674	NP_001124146	O43852	CALU_HUMAN	calumenin isoform b precursor	290	EF-hand 6.				platelet activation|platelet degranulation	extracellular region|Golgi apparatus|melanosome|sarcoplasmic reticulum lumen	calcium ion binding|protein binding				0						AGGAGGAGATCGTTGACAAGT	0.423													16	28					0	0	0.004007	0	0
FLNC	2318	broad.mit.edu	37	7	128494960	128494960	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:128494960G>A	uc003vnz.3	+	42	7338	c.7129G>A	c.(7129-7131)GAA>AAA	p.E2377K	FLNC_uc003voa.3_Missense_Mutation_p.E2344K	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	2377	Filamin 21.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						TGTCGTCCAGGAACCAGGTGG	0.627													20	48					0	0	0.014323	0	0
IRF5	3663	broad.mit.edu	37	7	128588051	128588051	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:128588051C>T	uc003vog.2	+	8	1147	c.1026C>T	c.(1024-1026)GCC>GCT	p.A342A	IRF5_uc003voh.2_Silent_p.A326A|IRF5_uc010llt.2_Silent_p.A250A|IRF5_uc003voi.2_Silent_p.A326A|IRF5_uc003voj.3_Silent_p.A326A|IRF5_uc010llw.1_3'UTR	NM_002200	NP_002191	Q13568	IRF5_HUMAN	interferon regulatory factor 5 isoform a	336					interferon-gamma-mediated signaling pathway|type I interferon-mediated signaling pathway	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity				0						ACCTTTATGCCATCCGCCTGT	0.602													6	71					0	0	0.001984	0	0
TSPAN33	340348	broad.mit.edu	37	7	128807381	128807381	+	Missense_Mutation	SNP	C	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:128807381C>G	uc003vop.1	+	7	959	c.730C>G	c.(730-732)CTA>GTA	p.L244V	TSPAN33_uc003voq.1_Missense_Mutation_p.L76V	NM_178562	NP_848657	Q86UF1	TSN33_HUMAN	tetraspanin 33	244	Helical; (Potential).					integral to membrane				ovary(1)	1						TGGTGTGGCTCTAGGCCTGGC	0.493													4	137					0	0	0.009096	0	0
SMO	6608	broad.mit.edu	37	7	128852256	128852256	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:128852256G>A	uc003vor.2	+	12	2608	c.2328G>A	c.(2326-2328)ATG>ATA	p.M776I	SMO_uc003vos.2_3'UTR	NM_005631	NP_005622	Q99835	SMO_HUMAN	smoothened precursor	776	Cytoplasmic (Potential).				adenohypophysis development|axon extension involved in axon guidance|canonical Wnt receptor signaling pathway|cardioblast differentiation|central nervous system neuron differentiation|cerebellar cortex morphogenesis|ciliary receptor clustering involved in smoothened signaling pathway|determination of left/right symmetry|dorsal/ventral neural tube patterning|embryonic camera-type eye development|embryonic digestive tract morphogenesis|embryonic neurocranium morphogenesis|embryonic viscerocranium morphogenesis|exocrine pancreas development|facial nerve development|floor plate formation|gonad development|heart morphogenesis|muscle cell fate commitment|negative regulation of apoptosis|neural crest cell migration|neuron fate commitment|neuron projection regeneration|odontogenesis of dentine-containing tooth|osteoblast differentiation|otolith morphogenesis|positive regulation of epithelial cell proliferation|positive regulation of mesenchymal cell proliferation|positive regulation of neuroblast proliferation|positive regulation of smoothened signaling pathway|semicircular canal morphogenesis|smoothened signaling pathway involved in regulation of cerebellar granule cell precursor cell proliferation|smoothened signaling pathway involved in ventral spinal cord patterning|spermatogenesis|vasculogenesis	cilium|cytoplasm|integral to membrane|neuronal cell body|plasma membrane	G-protein coupled receptor activity|PDZ domain binding|Wnt receptor activity|Wnt-protein binding			skin(19)|large_intestine(10)|central_nervous_system(3)|upper_aerodigestive_tract(2)|biliary_tract(1)|lung(1)|liver(1)	37						CCAACCTGATGGACACAGAAC	0.602			Mis		skin basal cell 								5	77					0	0	0.001168	0	0
AHCYL2	23382	broad.mit.edu	37	7	129046260	129046260	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:129046260C>T	uc011kov.1	+	10	1302	c.1248C>T	c.(1246-1248)TCC>TCT	p.S416S	AHCYL2_uc003vot.2_Silent_p.S415S|AHCYL2_uc003vov.2_Silent_p.S313S|AHCYL2_uc011kow.1_Silent_p.S314S|AHCYL2_uc011kox.1_Silent_p.S313S	NM_015328	NP_056143	Q96HN2	SAHH3_HUMAN	S-adenosylhomocysteine hydrolase-like 2 isoform	416					one-carbon metabolic process		adenosylhomocysteinase activity			ovary(2)	2						CCATGGGCTCCATTGTGTATG	0.493													33	66					0	0	0.004289	0	0
C7orf45	136263	broad.mit.edu	37	7	129856265	129856265	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:129856265G>A	uc003vpp.2	+	3	737	c.690G>A	c.(688-690)GAG>GAA	p.E230E		NM_145268	NP_660311	Q8WWF3	CG045_HUMAN	hypothetical protein LOC136263	230						integral to membrane					0	Melanoma(18;0.0435)					ACAGTCAAGAGGAAAGTTCCA	0.398													31	127					0	0	0.003755	0	0
MKLN1	4289	broad.mit.edu	37	7	131128415	131128415	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:131128415C>T	uc011kpm.1	+	11	1413	c.1349C>T	c.(1348-1350)CCT>CTT	p.P450L	MKLN1_uc011kpl.1_Missense_Mutation_p.P427L|MKLN1_uc010lmh.2_Missense_Mutation_p.P450L|MKLN1_uc003vqs.2_Missense_Mutation_p.P243L	NM_013255	NP_037387	Q9UL63	MKLN1_HUMAN	muskelin 1, intracellular mediator containing	450	Kelch 3.				signal transduction	cytoplasm	protein binding			breast(1)	1	Melanoma(18;0.162)					AATGCTGGGCCTGAGGACATC	0.428													9	54					0	0	0.004482	0	0
PODXL	5420	broad.mit.edu	37	7	131195814	131195814	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:131195814C>T	uc003vqw.3	-	2	737	c.479G>A	c.(478-480)GGG>GAG	p.G160E	PODXL_uc003vqx.3_Missense_Mutation_p.G160E	NM_001018111	NP_001018121	O00592	PODXL_HUMAN	podocalyxin-like isoform 1 precursor	160	Thr-rich.|Extracellular (Potential).				cell adhesion|epithelial tube formation|negative regulation of cell-cell adhesion|positive regulation of cell migration|positive regulation of cell-cell adhesion mediated by integrin|regulation of microvillus assembly	actin cytoskeleton|apical plasma membrane|centrosome|filopodium|integral to plasma membrane|lamellipodium|membrane raft|microvillus membrane|nucleolus|ruffle				breast(2)|pancreas(1)	3	Melanoma(18;0.162)					GCTGCTTTTCCCCCCAGAGTT	0.522													20	153					0	0	0.003330	0	0
PLXNA4	91584	broad.mit.edu	37	7	131925887	131925887	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:131925887C>T	uc003vra.3	-	5	1771	c.1542G>A	c.(1540-1542)CAG>CAA	p.Q514Q		NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	514	PSI 1.|Extracellular (Potential).					integral to membrane|intracellular|plasma membrane				ovary(1)	1						CGCCGCAGCTCTGATACTGAC	0.592													22	31					0	0	0.003330	0	0
EXOC4	60412	broad.mit.edu	37	7	132959761	132959761	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:132959761C>T	uc003vrk.2	+	2	146	c.111C>T	c.(109-111)GTC>GTT	p.V37V	EXOC4_uc011kpo.1_5'UTR|EXOC4_uc003vri.2_Silent_p.V37V|EXOC4_uc003vrj.2_Silent_p.V37V	NM_021807	NP_068579	Q96A65	EXOC4_HUMAN	SEC8 protein isoform a	37	Potential.				vesicle docking involved in exocytosis	exocyst	protein N-terminus binding			ovary(4)|large_intestine(3)|upper_aerodigestive_tract(1)|skin(1)	9		Esophageal squamous(399;0.129)				GTGACGATGTCGAAGACAGGG	0.418													20	30					0	0	0.002780	0	0
AKR1B1	231	broad.mit.edu	37	7	134134532	134134532	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:134134532G>A	uc003vrp.1	-	4	443	c.369C>T	c.(367-369)TTC>TTT	p.F123F	AKR1B1_uc003vrq.1_RNA	NM_001628	NP_001619	P15121	ALDR_HUMAN	aldo-keto reductase family 1, member B1	123					C21-steroid hormone biosynthetic process|carbohydrate metabolic process|response to stress	cytosol|extracellular space|nucleus	alditol:NADP+ 1-oxidoreductase activity|electron carrier activity|protein binding			ovary(3)	3					NADH(DB00157)|Sulindac(DB00605)	CATCCAATGGGAAAAATTCCT	0.468													53	79					0	0	0.014410	0	0
AKR1B10	57016	broad.mit.edu	37	7	134217800	134217800	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:134217800C>T	uc003vrr.2	+	4	716	c.396C>T	c.(394-396)ATC>ATT	p.I132I		NM_020299	NP_064695	O60218	AK1BA_HUMAN	aldo-keto reductase family 1, member B10	132					cellular aldehyde metabolic process|digestion|steroid metabolic process	cytoplasm	aldo-keto reductase (NADP) activity|protein binding			skin(5)	5						GTAATGCCATCGGTGGAAAAG	0.463													48	74					0	0	0.014410	0	0
AKR1B15	441282	broad.mit.edu	37	7	134261723	134261723	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:134261723C>T	uc011kpr.1	+	10	1133	c.834C>T	c.(832-834)ATC>ATT	p.I278I	AKR1B15_uc011kps.1_Silent_p.I250I	NM_001080538	NP_001074007	C9JRZ8	AK1BF_HUMAN	aldo-keto reductase family 1, member B15	278							oxidoreductase activity			ovary(1)	1						AGGTTCTGATCCGTTTCCATA	0.478													21	101					0	0	0.002780	0	0
STRA8	346673	broad.mit.edu	37	7	134943183	134943183	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:134943183C>T	uc011kpx.1	+	9	932	c.932C>T	c.(931-933)CCC>CTC	p.P311L		NM_182489	NP_872295	Q7Z7C7	STRA8_HUMAN	STRA8	311					DNA replication|regulation of transcription, DNA-dependent	cytoplasm|nucleus					0						GCATCCTTTCCCGTTGATGAA	0.517													3	4					0	0	0.004672	0	0
NUP205	23165	broad.mit.edu	37	7	135279449	135279449	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:135279449C>T	uc003vsw.2	+	13	2016	c.1985C>T	c.(1984-1986)TCC>TTC	p.S662F		NM_015135	NP_055950	Q92621	NU205_HUMAN	nucleoporin 205kDa	662					carbohydrate metabolic process|glucose transport|mRNA transport|protein import into nucleus, docking|regulation of glucose transport|transmembrane transport|viral reproduction	nuclear pore	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6						ATTGCTGCTTCCCTCTGGCAG	0.448													13	32					0	0	0.004007	0	0
NUP205	23165	broad.mit.edu	37	7	135301894	135301894	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:135301894G>A	uc003vsw.2	+	26	3620	c.3589G>A	c.(3589-3591)GAG>AAG	p.E1197K	NUP205_uc003vsx.2_5'Flank	NM_015135	NP_055950	Q92621	NU205_HUMAN	nucleoporin 205kDa	1197					carbohydrate metabolic process|glucose transport|mRNA transport|protein import into nucleus, docking|regulation of glucose transport|transmembrane transport|viral reproduction	nuclear pore	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6						GGAGATCCCTGAGCCTTTGCA	0.368													7	32					0	0	0.001984	0	0
SLC13A4	26266	broad.mit.edu	37	7	135378926	135378926	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:135378926C>T	uc003vta.2	-	10	1766	c.1077G>A	c.(1075-1077)GAG>GAA	p.E359E	SLC13A4_uc003vtb.2_Silent_p.E360E	NM_012450	NP_036582	Q9UKG4	S13A4_HUMAN	solute carrier family 13 (sodium/sulfate	359						integral to plasma membrane	sodium:sulfate symporter activity				0						GGATCCTCTTCTCTGACAACT	0.413													20	47					0	0	0.012319	0	0
CHRM2	1129	broad.mit.edu	37	7	136700504	136700504	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:136700504G>A	uc003vtf.1	+	4	1515	c.892G>A	c.(892-894)GAT>AAT	p.D298N	CHRM2_uc003vtg.1_Missense_Mutation_p.D298N|CHRM2_uc003vtj.1_Missense_Mutation_p.D298N|CHRM2_uc003vtk.1_Missense_Mutation_p.D298N|CHRM2_uc003vtl.1_Missense_Mutation_p.D298N|CHRM2_uc003vtm.1_Missense_Mutation_p.D298N|CHRM2_uc003vti.1_Missense_Mutation_p.D298N|CHRM2_uc003vto.1_Missense_Mutation_p.D298N|CHRM2_uc003vtn.1_Missense_Mutation_p.D298N|uc003vtp.1_Intron	NM_001006630	NP_001006631	P08172	ACM2_HUMAN	cholinergic receptor, muscarinic 2	298	Cytoplasmic (By similarity).				activation of phospholipase C activity by muscarinic acetylcholine receptor signaling pathway|G-protein signaling, coupled to cAMP nucleotide second messenger|nervous system development|regulation of heart contraction|response to virus	cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity|protein binding			ovary(4)|central_nervous_system(1)	5					Anisotropine Methylbromide(DB00517)|Atropine(DB00572)|Benzquinamide(DB00767)|Carbachol(DB00411)|Cryptenamine(DB00785)|Cyclizine(DB01176)|Desipramine(DB01151)|Diphenidol(DB01231)|Doxacurium(DB01334)|Doxacurium chloride(DB01135)|Flavoxate(DB01148)|Gallamine Triethiodide(DB00483)|Homatropine Methylbromide(DB00725)|Hyoscyamine(DB00424)|Ipratropium(DB00332)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Metocurine(DB01336)|Mivacurium(DB01226)|Olanzapine(DB00334)|Oxybutynin(DB01062)|Oxyphencyclimine(DB00383)|Pilocarpine(DB01085)|Procyclidine(DB00387)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Rocuronium(DB00728)|Thiethylperazine(DB00372)|Tolterodine(DB01036)|Tridihexethyl(DB00505)|Triflupromazine(DB00508)	TAATATGAGAGATGATGAAAT	0.478													27	36					0	0	0.005443	0	0
PTN	5764	broad.mit.edu	37	7	136936040	136936040	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:136936040C>T	uc003vtq.2	-	4	751	c.388G>A	c.(388-390)GAA>AAA	p.E130K	PTN_uc010lmx.2_Missense_Mutation_p.E130K|PTN_uc003vtr.1_Missense_Mutation_p.E130K	NM_002825	NP_002816	P21246	PTN_HUMAN	pleiotrophin	130					nervous system development|positive regulation of cell division|positive regulation of cell proliferation|transmembrane receptor protein tyrosine phosphatase signaling pathway	endoplasmic reticulum|extracellular space	growth factor activity|heparin binding|protein phosphatase inhibitor activity			upper_aerodigestive_tract(1)|pancreas(1)	2						TTCTGGCATTCGGCATTGTGC	0.507													66	134					0	0	0.014410	0	0
AKR1D1	6718	broad.mit.edu	37	7	137776547	137776547	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:137776547C>T	uc003vtz.2	+	3	364	c.295C>T	c.(295-297)CGC>TGC	p.R99C	AKR1D1_uc011kqb.1_Missense_Mutation_p.R99C|AKR1D1_uc011kqc.1_RNA|AKR1D1_uc011kqd.1_Intron|AKR1D1_uc011kqe.1_Missense_Mutation_p.R99C|AKR1D1_uc011kqf.1_Missense_Mutation_p.R99C|AKR1D1_uc010lmy.1_RNA	NM_005989	NP_005980	P51857	AK1D1_HUMAN	aldo-keto reductase family 1, member D1	99					androgen metabolic process|bile acid biosynthetic process|bile acid catabolic process|C21-steroid hormone metabolic process|cholesterol catabolic process|digestion	cytosol	aldo-keto reductase (NADP) activity|delta4-3-oxosteroid 5beta-reductase activity|steroid binding			skin(1)	1						AGAGATGGTCCGCCCAACCCT	0.463													11	35					0	0	0.013537	0	0
AKR1D1	6718	broad.mit.edu	37	7	137790062	137790062	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:137790062G>A	uc003vtz.2	+	5	535	c.466G>A	c.(466-468)GCT>ACT	p.A156T	AKR1D1_uc011kqb.1_Missense_Mutation_p.A156T|AKR1D1_uc011kqc.1_RNA|AKR1D1_uc011kqd.1_RNA|AKR1D1_uc011kqe.1_Missense_Mutation_p.A156T|AKR1D1_uc011kqf.1_Intron|AKR1D1_uc010lmy.1_RNA	NM_005989	NP_005980	P51857	AK1D1_HUMAN	aldo-keto reductase family 1, member D1	156					androgen metabolic process|bile acid biosynthetic process|bile acid catabolic process|C21-steroid hormone metabolic process|cholesterol catabolic process|digestion	cytosol	aldo-keto reductase (NADP) activity|delta4-3-oxosteroid 5beta-reductase activity|steroid binding			skin(1)	1						GGCGATGGAAGCTTGCAAAGA	0.463													55	77					0	0	0.014410	0	0
SVOPL	136306	broad.mit.edu	37	7	138329483	138329483	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:138329483C>T	uc011kqh.1	-	8	768	c.768G>A	c.(766-768)GGG>GGA	p.G256G	SVOPL_uc003vue.2_Silent_p.G104G	NM_001139456	NP_001132928	Q8N434	SVOPL_HUMAN	SVOP-like isoform 1	256						integral to membrane	transmembrane transporter activity				0						CCACCAGCTTCCCCTCCGGCA	0.627													17	25					0	0	0.008871	0	0
ZC3HAV1	56829	broad.mit.edu	37	7	138763369	138763369	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:138763369G>A	uc003vun.2	-	5	1890	c.1502C>T	c.(1501-1503)TCT>TTT	p.S501F	ZC3HAV1_uc003vuo.2_5'UTR|ZC3HAV1_uc003vup.2_Missense_Mutation_p.S501F	NM_020119	NP_064504	Q7Z2W4	ZCCHV_HUMAN	zinc finger antiviral protein isoform 1	501					response to virus	cytoplasm|nucleus	NAD+ ADP-ribosyltransferase activity|RNA binding|zinc ion binding			ovary(1)	1						CACCCTAGAAGATGTGGTACT	0.373													22	33					0	0	0.004656	0	0
TBXAS1	6916	broad.mit.edu	37	7	139715636	139715636	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:139715636G>A	uc011kqv.1	+	12	1645	c.1481G>A	c.(1480-1482)AGC>AAC	p.S494N	TBXAS1_uc003vvh.2_Missense_Mutation_p.S448N|TBXAS1_uc010lne.2_Missense_Mutation_p.S380N|TBXAS1_uc011kqu.1_Missense_Mutation_p.S399N|TBXAS1_uc003vvi.2_Missense_Mutation_p.S448N|TBXAS1_uc003vvj.2_Missense_Mutation_p.S448N|TBXAS1_uc011kqw.1_Missense_Mutation_p.S428N	NM_001130966	NP_001124438	P24557	THAS_HUMAN	thromboxane A synthase 1, platelet isoform	447	Cytoplasmic (Potential).				hormone biosynthetic process|prostaglandin biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum lumen|endoplasmic reticulum membrane|integral to membrane	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen|thromboxane-A synthase activity			ovary(2)|breast(1)	3	Melanoma(164;0.0142)					CACTGGCCAAGCCCGGAGACC	0.592													17	38					0	0	0.010504	0	0
JHDM1D	80853	broad.mit.edu	37	7	139791650	139791650	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:139791650C>T	uc003vvm.2	-	19	2689	c.2685G>A	c.(2683-2685)AAG>AAA	p.K895K	JHDM1D_uc010lng.2_RNA	NM_030647	NP_085150	Q6ZMT4	KDM7_HUMAN	jumonji C domain containing histone demethylase	895					midbrain development|transcription, DNA-dependent	nucleolus	histone demethylase activity (H3-K27 specific)|histone demethylase activity (H3-K36 specific)|histone demethylase activity (H3-K9 specific)|histone demethylase activity (H4-K20 specific)|iron ion binding|methylated histone residue binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|zinc ion binding			ovary(1)	1	Melanoma(164;0.0142)					ATGCCGGTCTCTTGGTGGGGT	0.483													12	121					0	0	0.004990	0	0
DENND2A	27147	broad.mit.edu	37	7	140301735	140301735	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:140301735C>T	uc010lnj.2	-	1	608	c.463G>A	c.(463-465)GAT>AAT	p.D155N	DENND2A_uc011kre.1_RNA|DENND2A_uc010lnk.2_Missense_Mutation_p.D155N|DENND2A_uc003vvw.2_Missense_Mutation_p.D155N|DENND2A_uc003vvx.2_Missense_Mutation_p.D155N	NM_015689	NP_056504	Q9ULE3	DEN2A_HUMAN	DENN/MADD domain containing 2A	155										ovary(3)|breast(1)	4	Melanoma(164;0.00956)					GAGAGGGGATCGTTCTGAAAG	0.602													28	53					0	0	0.004656	0	0
TAS2R5	54429	broad.mit.edu	37	7	141490991	141490991	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:141490991C>T	uc003vwr.1	+	1	975	c.830C>T	c.(829-831)CCT>CTT	p.P277L		NM_018980	NP_061853	Q9NYW4	TA2R5_HUMAN	taste receptor T2R5	277	Cytoplasmic (Potential).				chemosensory behavior|sensory perception of taste		taste receptor activity				0	Melanoma(164;0.0171)					ATGGGGATTCCTAGGGTGAAG	0.498													49	101					0	0	0.014410	0	0
MGAM	8972	broad.mit.edu	37	7	141726950	141726950	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:141726950C>T	uc003vwy.2	+	9	1072	c.1018C>T	c.(1018-1020)CGC>TGC	p.R340C		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	340	Lumenal (Potential).|Maltase.				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	CATCACTTACCGCACCATTGG	0.388													38	97					0	0	0.009718	0	0
MGAM	8972	broad.mit.edu	37	7	141740542	141740542	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:141740542G>A	uc003vwy.2	+	21	2448	c.2394G>A	c.(2392-2394)AGG>AGA	p.R798R		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	798	Lumenal (Potential).|Maltase.				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	TGAGATGGAGGAAGCAAAAAG	0.468													5	22					0	0	0.000602	0	0
MGAM	8972	broad.mit.edu	37	7	141755472	141755472	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:141755472G>A	uc003vwy.2	+	28	3483	c.3429G>A	c.(3427-3429)AGG>AGA	p.R1143R		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1143	Glucoamylase.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	GGTCCTATAGGAGAGACTTGG	0.547													15	62					0	0	0.002450	0	0
MGAM	8972	broad.mit.edu	37	7	141760126	141760126	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:141760126C>T	uc003vwy.2	+	34	4129	c.4075C>T	c.(4075-4077)CCT>TCT	p.P1359S		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1359	Glucoamylase.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	GCCTGATTTTCCTGATGTTGT	0.438													13	31					0	0	0.004007	0	0
MGAM	8972	broad.mit.edu	37	7	141765264	141765264	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:141765264C>T	uc003vwy.2	+	38	4668	c.4614C>T	c.(4612-4614)ATC>ATT	p.I1538I		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1538	Glucoamylase.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	AGAAGTCTATCATTGGTGCGT	0.597													6	10					0	0	0.001168	0	0
MGAM	8972	broad.mit.edu	37	7	141796206	141796206	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:141796206C>T	uc003vwy.2	+	42	5049	c.4995C>T	c.(4993-4995)GTC>GTT	p.V1665V		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1665	Glucoamylase.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	TCAGCCCTGTCCTGGAGCGTG	0.498													13	27					0	0	0.003163	0	0
Unknown	0	broad.mit.edu	37	7	142499057	142499057	+	RNA	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:142499057G>A	uc011ksh.1	+	3		c.436G>A			uc011ksi.1_RNA|uc003vzw.1_RNA|uc010loj.1_RNA|uc003wad.2_RNA|uc003wag.1_3'UTR|uc003wbe.3_RNA|uc003wbf.3_RNA|uc003wbg.3_RNA|uc003wbh.3_Missense_Mutation_p.D158N|uc003wbi.3_RNA|uc003wbj.3_RNA|uc003wbm.3_RNA|uc003wbn.3_RNA|uc010los.2_RNA					Homo sapiens mRNA for T-cell receptor beta chain, partial cds, clone:TCRVB.3.																		GTGGACCCAGGATAGGGCCAA	0.627													15	102					0	0	0.004990	0	0
EPHB6	2051	broad.mit.edu	37	7	142566055	142566055	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:142566055C>T	uc011kst.1	+	14	2762	c.1975C>T	c.(1975-1977)CGA>TGA	p.R659*	EPHB6_uc011ksu.1_Nonsense_Mutation_p.R659*|EPHB6_uc003wbs.2_Nonsense_Mutation_p.R367*|EPHB6_uc003wbt.2_Nonsense_Mutation_p.R133*|EPHB6_uc003wbu.2_Nonsense_Mutation_p.R367*|EPHB6_uc003wbv.2_Nonsense_Mutation_p.R43*	NM_004445	NP_004436	O15197	EPHB6_HUMAN	ephrin receptor EphB6 precursor	659	Cytoplasmic (Potential).					extracellular region|integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|large_intestine(4)|central_nervous_system(3)|stomach(1)|skin(1)|ovary(1)|pancreas(1)	19	Melanoma(164;0.059)					TCAGGCCATCCGAGAACTTGC	0.562													31	42					0	0	0.008361	0	0
EPHB6	2051	broad.mit.edu	37	7	142566827	142566827	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:142566827C>T	uc011kst.1	+	16	3171	c.2384C>T	c.(2383-2385)TCG>TTG	p.S795L	EPHB6_uc011ksu.1_Missense_Mutation_p.S795L|EPHB6_uc003wbs.2_Missense_Mutation_p.S503L|EPHB6_uc003wbt.2_Missense_Mutation_p.S269L|EPHB6_uc003wbu.2_Missense_Mutation_p.S503L|EPHB6_uc003wbv.2_Missense_Mutation_p.S179L	NM_004445	NP_004436	O15197	EPHB6_HUMAN	ephrin receptor EphB6 precursor	795	Cytoplasmic (Potential).|Protein kinase.					extracellular region|integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|large_intestine(4)|central_nervous_system(3)|stomach(1)|skin(1)|ovary(1)|pancreas(1)	19	Melanoma(164;0.059)					GTCCATCGCTCGCTGTCTGCC	0.637													11	38					0	0	0.010729	0	0
TRPV6	55503	broad.mit.edu	37	7	142572682	142572682	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:142572682G>A	uc003wbx.1	-	10	1477	c.1261C>T	c.(1261-1263)CTT>TTT	p.L421F	TRPV6_uc003wbw.1_Missense_Mutation_p.L207F|TRPV6_uc010lou.1_Missense_Mutation_p.L292F	NM_018646	NP_061116	Q9H1D0	TRPV6_HUMAN	transient receptor potential cation channel,	421	Helical; (Potential).				regulation of calcium ion-dependent exocytosis	integral to plasma membrane	calcium channel activity|calmodulin binding			ovary(2)	2	Melanoma(164;0.059)					GGGCCCCCAAGGATGGTCTGT	0.542													22	63					0	0	0.003330	0	0
TRPV6	55503	broad.mit.edu	37	7	142575515	142575515	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:142575515C>T	uc003wbx.1	-	3	454	c.238G>A	c.(238-240)GAA>AAA	p.E80K	TRPV6_uc003wbw.1_5'Flank|TRPV6_uc010lou.1_5'UTR	NM_018646	NP_061116	Q9H1D0	TRPV6_HUMAN	transient receptor potential cation channel,	80	Cytoplasmic (Potential).|ANK 2.				regulation of calcium ion-dependent exocytosis	integral to plasma membrane	calcium channel activity|calmodulin binding			ovary(2)	2	Melanoma(164;0.059)					AGCGCTGTTTCCCCCATGGCT	0.567													39	81					0	0	0.008740	0	0
KEL	3792	broad.mit.edu	37	7	142638490	142638490	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:142638490C>T	uc003wcb.2	-	19	2258	c.2048G>A	c.(2047-2049)AGG>AAG	p.R683K		NM_000420	NP_000411	P23276	KELL_HUMAN	Kell blood group, metallo-endopeptidase	683	Extracellular (Potential).				proteolysis|vasoconstriction	integral to membrane|plasma membrane	metal ion binding|metalloendopeptidase activity|protein binding			ovary(3)|central_nervous_system(1)	4	Melanoma(164;0.059)					GCTGGGCTTCCTACACATCAC	0.607													22	68					0	0	0.003330	0	0
KEL	3792	broad.mit.edu	37	7	142650976	142650977	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:142650976_142650977GG>AA	uc003wcb.2	-	9	1201_1202	c.991_992CC>TT	c.(991-993)CCT>TTT	p.P331F		NM_000420	NP_000411	P23276	KELL_HUMAN	Kell blood group, metallo-endopeptidase	331	Extracellular (Potential).				proteolysis|vasoconstriction	integral to membrane|plasma membrane	metal ion binding|metalloendopeptidase activity|protein binding			ovary(3)|central_nervous_system(1)	4	Melanoma(164;0.059)					GGACTGAGAAGGGCTCAGGGAC	0.54													45	91					0	0	0.004672	0	0
OR6V1	346517	broad.mit.edu	37	7	142749749	142749749	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:142749749C>T	uc011ksv.1	+	1	312	c.312C>T	c.(310-312)TCC>TCT	p.S104S		NM_001001667	NP_001001667	Q8N148	OR6V1_HUMAN	olfactory receptor, family 6, subfamily V,	104	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	Melanoma(164;0.059)					TCCACTTTTCCCTGGGGTCCA	0.557													7	124					0	0	0.003080	0	0
TAS2R40	259286	broad.mit.edu	37	7	142919780	142919780	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:142919780C>T	uc011ksx.1	+	1	609	c.609C>T	c.(607-609)TTC>TTT	p.F203F		NM_176882	NP_795363	P59535	T2R40_HUMAN	taste receptor, type 2, member 40	203	Helical; Name=5; (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity			ovary(1)	1	Melanoma(164;0.059)					TGGGGATCTTCGTTCCTCTGA	0.502													28	45					0	0	0.007291	0	0
CLCN1	1180	broad.mit.edu	37	7	143016884	143016884	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:143016884G>A	uc003wcr.1	+	2	304	c.217G>A	c.(217-219)GAG>AAG	p.E73K	CLCN1_uc011ktc.1_5'UTR|CLCN1_uc003wcs.1_5'Flank|CLCN1_uc010lox.1_5'Flank|CLCN1_uc010loy.1_5'Flank	NM_000083	NP_000074	P35523	CLCN1_HUMAN	chloride channel 1, skeletal muscle	73	Cytoplasmic (By similarity).				muscle contraction	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Melanoma(164;0.205)					CTCAGACAGGGAGCAGGACAT	0.463													12	60					0	0	0.010729	0	0
CLCN1	1180	broad.mit.edu	37	7	143028356	143028356	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:143028356C>T	uc003wcr.1	+	9	1098	c.1011C>T	c.(1009-1011)TTC>TTT	p.F337F	CLCN1_uc011ktc.1_5'UTR	NM_000083	NP_000074	P35523	CLCN1_HUMAN	chloride channel 1, skeletal muscle	337					muscle contraction	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Melanoma(164;0.205)					GAACCAATTTCCGAATGGATT	0.522													20	72					0	0	0.003954	0	0
CLCN1	1180	broad.mit.edu	37	7	143049049	143049049	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:143049049G>A	uc003wcr.1	+	23	3045	c.2958G>A	c.(2956-2958)CTG>CTA	p.L986L	CLCN1_uc011ktc.1_Silent_p.L598L	NM_000083	NP_000074	P35523	CLCN1_HUMAN	chloride channel 1, skeletal muscle	986	Cytoplasmic (By similarity).				muscle contraction	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Melanoma(164;0.205)					AGGATGAACTGATCCTTTGAC	0.617													29	69					0	0	0.009535	0	0
FAM131B	9715	broad.mit.edu	37	7	143053835	143053835	+	Silent	SNP	T	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:143053835T>A	uc003wct.2	-	6	2513	c.807A>T	c.(805-807)GCA>GCT	p.A269A	FAM131B_uc010loz.2_Silent_p.A237A|FAM131B_uc003wcu.3_Silent_p.A269A|FAM131B_uc010lpa.2_Silent_p.A297A	NM_014690	NP_055505	Q86XD5	F131B_HUMAN	hypothetical protein LOC9715 isoform b	269											0	Melanoma(164;0.205)					CAGGGCCCCTTGCCAGGTCCA	0.632													20	106					0	0	0.010504	0	0
CTAGE6	340307	broad.mit.edu	37	7	143453537	143453537	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:143453537C>T	uc003wdk.3	-	1	1307	c.1215G>A	c.(1213-1215)GAG>GAA	p.E405E	uc011ktn.1_Intron|uc011kto.1_Intron|uc011ktp.1_Intron|LOC154761_uc011ktq.1_Intron|LOC154761_uc011ktr.1_Intron|LOC154761_uc011kts.1_Intron|LOC154761_uc003wdj.1_Intron	NM_178561	NP_848656	Q86UF2	CTGE6_HUMAN	CTAGE family, member 6	405	Potential.					integral to membrane					0	Melanoma(164;0.0903)					GGTAATTTTCCTCCACTGTTA	0.368													17	62					0	0	0.004007	0	0
OR6B1	135946	broad.mit.edu	37	7	143701353	143701353	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:143701353G>A	uc003wdt.1	+	1	264	c.264G>A	c.(262-264)GTG>GTA	p.V88V		NM_001005281	NP_001005281	O95007	OR6B1_HUMAN	olfactory receptor, family 6, subfamily B,	88	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	Melanoma(164;0.0783)					TTTGGTCTGTGAACAACAGCA	0.468													19	88					0	0	0.010504	0	0
OR2A5	393046	broad.mit.edu	37	7	143747527	143747527	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:143747527C>T	uc011ktw.1	+	1	33	c.33C>T	c.(31-33)TTC>TTT	p.F11F		NM_012365	NP_036497	Q96R48	OR2A5_HUMAN	olfactory receptor, family 2, subfamily A,	11	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3	Melanoma(164;0.0783)					TCACAGAATTCATTCTCCTGG	0.502													27	75					0	0	0.007291	0	0
OR2A25	392138	broad.mit.edu	37	7	143771368	143771368	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:143771368G>A	uc011ktx.1	+	1	56	c.56G>A	c.(55-57)GGC>GAC	p.G19D		NM_001004488	NP_001004488	A4D2G3	O2A25_HUMAN	olfactory receptor, family 2, subfamily A,	19	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Melanoma(164;0.0783)					TTTCCCATTGGCCCAAGGATT	0.498													28	61					0	0	0.007291	0	0
OR2A25	392138	broad.mit.edu	37	7	143772188	143772188	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:143772188G>A	uc011ktx.1	+	1	876	c.876G>A	c.(874-876)AGG>AGA	p.R292R		NM_001004488	NP_001004488	A4D2G3	O2A25_HUMAN	olfactory receptor, family 2, subfamily A,	292	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Melanoma(164;0.0783)					ATAGTCTTAGGAACAAGGAAG	0.423													77	146					0	0	0.014410	0	0
CNTNAP2	26047	broad.mit.edu	37	7	146997283	146997283	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:146997283G>A	uc003weu.1	+	9	1915	c.1399G>A	c.(1399-1401)GAA>AAA	p.E467K		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	467	Extracellular (Potential).|Laminin G-like 2.				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			CCTAGCCAAGGAAAATTTTGC	0.413										HNSCC(39;0.1)			15	46					0	0	0.004007	0	0
CNTNAP2	26047	broad.mit.edu	37	7	147964131	147964131	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:147964131C>T	uc003weu.1	+	21	3904	c.3388C>T	c.(3388-3390)CAT>TAT	p.H1130Y		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	1130	Laminin G-like 4.|Extracellular (Potential).				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			GCAGCTCGATCATTATCCTTC	0.458										HNSCC(39;0.1)			13	94					0	0	0.002450	0	0
CNTNAP2	26047	broad.mit.edu	37	7	148080978	148080978	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:148080978C>T	uc003weu.1	+	22	4229	c.3713C>T	c.(3712-3714)TCA>TTA	p.S1238L	CNTNAP2_uc003wev.1_Missense_Mutation_p.S15L	NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	1238	Extracellular (Potential).				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			CACCTGGATTCAGGTAAAGTC	0.368										HNSCC(39;0.1)			7	14					0	0	0.003080	0	0
PDIA4	9601	broad.mit.edu	37	7	148709376	148709376	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:148709376G>A	uc003wff.2	-	5	973	c.691C>T	c.(691-693)CCC>TCC	p.P231S		NM_004911	NP_004902	P13667	PDIA4_HUMAN	protein disulfide isomerase A4 precursor	231	Thioredoxin 2.				cell redox homeostasis|glycerol ether metabolic process|protein secretion	endoplasmic reticulum lumen|melanosome	electron carrier activity|protein binding|protein disulfide isomerase activity|protein disulfide oxidoreductase activity			lung(5)|ovary(1)	6	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00385)			TTTGCCAGGGGAATTGGAGGA	0.542													17	38					0	0	0.004990	0	0
ZNF425	155054	broad.mit.edu	37	7	148801242	148801242	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:148801242C>T	uc003wfj.2	-	4	1794	c.1721G>A	c.(1720-1722)CGG>CAG	p.R574Q		NM_001001661	NP_001001661	Q6IV72	ZN425_HUMAN	zinc finger protein 425	574	C2H2-type 13.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			breast(2)|ovary(1)	3	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00463)			CCTGTGCATCCGCTGGTGGAA	0.602													8	29					0	0	0.006214	0	0
SSPO	23145	broad.mit.edu	37	7	149483309	149483309	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:149483309G>A	uc010lpk.2	+	23	3377	c.3377G>A	c.(3376-3378)GGA>GAA	p.G1126E	SSPO_uc010lpl.1_Missense_Mutation_p.G376E	NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	1126	VWFD 3.				cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			CTCTGGGATGGAGATCAGGCC	0.637													4	7					0	0	0.001168	0	0
GIMAP7	168537	broad.mit.edu	37	7	150217443	150217443	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:150217443G>A	uc003whk.2	+	2	511	c.381G>A	c.(379-381)ATG>ATA	p.M127I		NM_153236	NP_694968	Q8NHV1	GIMA7_HUMAN	GTPase, IMAP family member 7	127							GTP binding			pancreas(1)|skin(1)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0218)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		TGAAGCACATGGTCATCTTGT	0.512													8	40					0	0	0.004482	0	0
GIMAP6	474344	broad.mit.edu	37	7	150325191	150325191	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:150325191C>T	uc003whn.2	-	3	919	c.495G>A	c.(493-495)AAG>AAA	p.K165K	GIMAP6_uc003whm.2_Silent_p.K85K	NM_024711	NP_078987	Q6P9H5	GIMA6_HUMAN	GTPase, IMAP family member 6	165	GTP (Potential).						GTP binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CCAGGTCTTCCTTCCGGGTGA	0.627													41	70					0	0	0.010771	0	0
GIMAP5	55340	broad.mit.edu	37	7	150439746	150439746	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:150439746G>A	uc003whr.1	+	3	871	c.519G>A	c.(517-519)CTG>CTA	p.L173L	GIMAP5_uc010lpu.2_Silent_p.L31L	NM_018384	NP_060854	Q96F15	GIMA5_HUMAN	GTPase, IMAP family member 5	173	Cytoplasmic (Potential).					integral to membrane|mitochondrial outer membrane	GTP binding			ovary(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		ACTGCAGCCTGAAAGACCTGG	0.577													49	74					0	0	0.014410	0	0
KCNH2	3757	broad.mit.edu	37	7	150648587	150648587	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:150648587G>A	uc003wic.2	-	7	1907	c.1894C>T	c.(1894-1896)CCC>TCC	p.P632S	KCNH2_uc003wib.2_Missense_Mutation_p.P292S|KCNH2_uc011kux.1_Missense_Mutation_p.P536S|KCNH2_uc003wid.2_Missense_Mutation_p.P292S|KCNH2_uc003wie.2_Missense_Mutation_p.P632S	NM_000238	NP_000229	Q12809	KCNH2_HUMAN	voltage-gated potassium channel, subfamily H,	632			P -> S (in LQT2).		blood circulation|muscle contraction|regulation of heart contraction|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|two-component sensor activity			skin(3)|ovary(1)	4	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	Amiodarone(DB01118)|Amsacrine(DB00276)|Astemizole(DB00637)|Carvedilol(DB01136)|Cisapride(DB00604)|Dofetilide(DB00204)|Halofantrine(DB01218)|Ibutilide(DB00308)|Pimozide(DB01100)|Propafenone(DB01182)|Quinidine(DB00908)|Sertindole(DB06144)|Sotalol(DB00489)|Terfenadine(DB00342)|Verapamil(DB00661)	TTGGTGTTGGGAGAGACGTTG	0.622													41	54					0	0	0.006999	0	0
NOS3	4846	broad.mit.edu	37	7	150703536	150703536	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:150703536G>A	uc003wif.2	+	15	2070	c.1774G>A	c.(1774-1776)GAG>AAG	p.E592K	NOS3_uc011kuy.1_Missense_Mutation_p.E386K	NM_000603	NP_000594	P29474	NOS3_HUMAN	nitric oxide synthase 3 isoform 1	592	Flavodoxin-like.				anti-apoptosis|arginine catabolic process|blood vessel remodeling|endothelial cell migration|mitochondrion organization|negative regulation of muscle hyperplasia|negative regulation of platelet activation|nitric oxide biosynthetic process|platelet activation|positive regulation of angiogenesis|positive regulation of guanylate cyclase activity|positive regulation of vasodilation|regulation of blood vessel size|regulation of nitric-oxide synthase activity|regulation of systemic arterial blood pressure by endothelin|response to fluid shear stress|response to heat|smooth muscle hyperplasia	caveola|cytoskeleton|cytosol|Golgi membrane	actin monomer binding|arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			central_nervous_system(5)|large_intestine(2)|skin(1)	8	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	L-Arginine(DB00125)|L-Citrulline(DB00155)|Rosuvastatin(DB01098)|Tetrahydrobiopterin(DB00360)	TGCCCTGATGGAGATGTCCGG	0.522													60	101					0	0	0.014410	0	0
ACCN3	9311	broad.mit.edu	37	7	150746440	150746440	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:150746440C>T	uc003win.2	+	1	836	c.468C>T	c.(466-468)TCC>TCT	p.S156S	ACCN3_uc003wio.2_Silent_p.S156S|ACCN3_uc003wip.2_Silent_p.S156S|ACCN3_uc003wiq.2_RNA	NM_004769	NP_004760	Q9UHC3	ACCN3_HUMAN	amiloride-sensitive cation channel 3 isoform a	156	Extracellular (Potential).				sensory perception|signal transduction	cytoplasm|integral to plasma membrane	ligand-gated sodium channel activity			ovary(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CTGGGCACTCCCTGGATGACA	0.657													16	52					0	0	0.004990	0	0
CRYGN	155051	broad.mit.edu	37	7	151135258	151135258	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:151135258C>T	uc003wke.2	-	2	190	c.94G>A	c.(94-96)GAC>AAC	p.D32N	CRYGN_uc003wkf.2_Missense_Mutation_p.D32N|CRYGN_uc003wkg.2_RNA|CRYGN_uc010lqd.1_5'Flank	NM_144727	NP_653328	Q8WXF5	CRGN_HUMAN	gammaN-crystallin	32	Beta/gamma crystallin 'Greek key' 1.										0			OV - Ovarian serous cystadenocarcinoma(82;0.00358)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		AAGCCCCGGTCCTGGAAGTTG	0.562													12	43					0	0	0.001855	0	0
MLL3	58508	broad.mit.edu	37	7	151849883	151849883	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:151849883G>A	uc003wla.2	-	49	12652	c.12433C>T	c.(12433-12435)CGT>TGT	p.R4145C	MLL3_uc003wkz.2_Missense_Mutation_p.R3263C|MLL3_uc003wkx.2_Missense_Mutation_p.R303C|MLL3_uc003wky.2_Missense_Mutation_p.R1709C	NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	4145					intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		GGAGGCCCACGGAGAAGTAAA	0.522			N		medulloblastoma								23	59					0	0	0.002780	0	0
MLL3	58508	broad.mit.edu	37	7	151874081	151874081	+	Silent	SNP	G	A	A	rs141305805		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:151874081G>A	uc003wla.2	-	38	8676	c.8457C>T	c.(8455-8457)ACC>ACT	p.T2819T	MLL3_uc003wkz.2_Silent_p.T1880T|MLL3_uc003wky.2_Silent_p.T328T	NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	2819					intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		TTACCTCATTGGTAACAGTGG	0.333			N		medulloblastoma								23	54					0	0	0.003954	0	0
MLL3	58508	broad.mit.edu	37	7	151884809	151884809	+	Missense_Mutation	SNP	G	A	A	rs149660967		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:151884809G>A	uc003wla.2	-	32	5003	c.4784C>T	c.(4783-4785)CCT>CTT	p.P1595L	MLL3_uc003wkz.2_Missense_Mutation_p.P656L	NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	1595					intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		CCTGGCATCAGGATAAGAGGA	0.373			N		medulloblastoma								13	30					0	0	0.001855	0	0
MLL3	58508	broad.mit.edu	37	7	151927079	151927079	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:151927079C>T	uc003wla.2	-	18	3124	c.2905G>A	c.(2905-2907)GGA>AGA	p.G969R	MLL3_uc003wkz.2_Missense_Mutation_p.G30R	NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	969	PHD-type 4.				intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		CCTTCTGCTCCTTGGCCAAAA	0.348			N		medulloblastoma								9	270					0	0	0.014323	0	0
HTR5A	3361	broad.mit.edu	37	7	154876048	154876048	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:154876048C>T	uc003wlu.1	+	2	989	c.925C>T	c.(925-927)CCC>TCC	p.P309S		NM_024012	NP_076917	P47898	5HT5A_HUMAN	5-hydroxytryptamine receptor 5A	309	Extracellular (By similarity).					integral to plasma membrane	serotonin receptor activity			ovary(2)|large_intestine(1)	3	all_neural(206;0.119)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.0238)	UCEC - Uterine corpus endometrioid carcinoma (81;0.171)		GCTCATCAGTCCCCTCTGCTC	0.572													48	64					0	0	0.014410	0	0
WDR60	55112	broad.mit.edu	37	7	158718935	158718935	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:158718935C>T	uc003woe.3	+	18	2473	c.2315C>T	c.(2314-2316)TCA>TTA	p.S772L	WDR60_uc010lqv.2_RNA|WDR60_uc010lqw.2_Missense_Mutation_p.S404L	NM_018051	NP_060521	Q8WVS4	WDR60_HUMAN	WD repeat domain 60	772										ovary(2)|breast(1)|central_nervous_system(1)	4	Ovarian(565;0.152)	all_cancers(7;1.25e-09)|all_epithelial(9;0.000894)|all_hematologic(28;0.00603)	OV - Ovarian serous cystadenocarcinoma(82;0.00174)	UCEC - Uterine corpus endometrioid carcinoma (81;0.19)|STAD - Stomach adenocarcinoma(7;0.18)		GAACCTATCTCAACGTCCGTC	0.433													8	10					0	0	0.008291	0	0
VIPR2	7434	broad.mit.edu	37	7	158827297	158827297	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr7:158827297C>T	uc003woh.2	-	9	1040	c.854G>A	c.(853-855)CGA>CAA	p.R285Q	VIPR2_uc010lqx.2_RNA|VIPR2_uc010lqy.2_RNA	NM_003382	NP_003373	P41587	VIPR2_HUMAN	vasoactive intestinal peptide receptor 2	285	Helical; Name=5; (Potential).				cell-cell signaling	integral to plasma membrane				lung(1)|central_nervous_system(1)	2	Ovarian(565;0.152)	all_cancers(7;1.13e-11)|all_epithelial(9;0.000545)|all_hematologic(28;0.00603)	OV - Ovarian serous cystadenocarcinoma(82;0.00231)	UCEC - Uterine corpus endometrioid carcinoma (81;0.2)|STAD - Stomach adenocarcinoma(7;0.18)		AATCGGTATTCGTATGACCCA	0.473													14	50					0	0	0.006122	0	0
DLGAP2	9228	broad.mit.edu	37	8	1497566	1497566	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:1497566A>G	uc003wpl.2	+	2	804	c.707A>G	c.(706-708)AAC>AGC	p.N236S	DLGAP2_uc003wpm.2_Missense_Mutation_p.N236S	NM_004745	NP_004736	Q9P1A6	DLGP2_HUMAN	discs large-associated protein 2	315					neuron-neuron synaptic transmission	cell junction|neurofilament|postsynaptic density|postsynaptic membrane	protein binding				0		Ovarian(12;0.0271)|Hepatocellular(245;0.0838)|Colorectal(14;0.0846)		BRCA - Breast invasive adenocarcinoma(11;0.000169)|READ - Rectum adenocarcinoma(644;0.171)		AGCGTGCTCAACCGGCACCAC	0.687													32	65					0	0	0.004289	0	0
ARHGEF10	9639	broad.mit.edu	37	8	1905131	1905131	+	Missense_Mutation	SNP	C	T	T	rs111978809		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:1905131C>T	uc003wpr.2	+	29	3915	c.3737C>T	c.(3736-3738)TCG>TTG	p.S1246L	ARHGEF10_uc003wps.2_Missense_Mutation_p.S1208L|ARHGEF10_uc010lre.2_Missense_Mutation_p.S897L	NM_014629	NP_055444	O15013	ARHGA_HUMAN	Rho guanine nucleotide exchange factor 10	1271	Ser-rich.				centrosome duplication|myelination in peripheral nervous system|positive regulation of GTP catabolic process|positive regulation of stress fiber assembly|regulation of Rho protein signal transduction|spindle assembly involved in mitosis	centrosome|cytosol|soluble fraction	kinesin binding|Rho guanyl-nucleotide exchange factor activity			large_intestine(1)	1		Colorectal(14;3.46e-05)|Renal(68;0.000518)|Ovarian(12;0.00409)|Myeloproliferative disorder(644;0.0255)|Hepatocellular(245;0.0834)		COAD - Colon adenocarcinoma(149;1.62e-05)|BRCA - Breast invasive adenocarcinoma(11;1.68e-05)|KIRC - Kidney renal clear cell carcinoma(542;0.00361)|READ - Rectum adenocarcinoma(644;0.0718)		TTGGGAGATTCGCTGGGATCG	0.582													33	57					0	0	0.007835	0	0
MYOM2	9172	broad.mit.edu	37	8	2007281	2007281	+	Missense_Mutation	SNP	G	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:2007281G>C	uc003wpx.3	+	6	706	c.568G>C	c.(568-570)GAT>CAT	p.D190H	MYOM2_uc011kwi.1_Intron	NM_003970	NP_003961	P54296	MYOM2_HUMAN	myomesin 2	190	Ig-like C2-type 1.				muscle contraction	myosin filament	structural constituent of muscle			ovary(4)|central_nervous_system(1)|skin(1)	6		Ovarian(12;0.0572)|Colorectal(14;0.0844)|Hepatocellular(245;0.217)		BRCA - Breast invasive adenocarcinoma(11;1.85e-05)|Colorectal(4;0.0101)|READ - Rectum adenocarcinoma(4;0.148)|COAD - Colon adenocarcinoma(4;0.179)		TAGGTACAAAGATGGCAGTCT	0.507													10	34					0	0	0.006214	0	0
CSMD1	64478	broad.mit.edu	37	8	2820869	2820869	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:2820869C>T	uc011kwk.1	-	60	9722	c.9332G>A	c.(9331-9333)GGA>GAA	p.G3111E	CSMD1_uc011kwj.1_Missense_Mutation_p.G2440E|CSMD1_uc010lrg.2_Missense_Mutation_p.G1002E	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	3111	Sushi 25.|Extracellular (Potential).					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		GAAATCACTTCCCTCCACTGT	0.582													51	130					0	0	0.014410	0	0
CSMD1	64478	broad.mit.edu	37	8	3038724	3038724	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:3038724G>A	uc011kwk.1	-	37	6026	c.5636C>T	c.(5635-5637)CCG>CTG	p.P1879L	CSMD1_uc011kwj.1_Missense_Mutation_p.P1271L|CSMD1_uc003wqe.2_Missense_Mutation_p.P1035L|CSMD1_uc010lrg.2_5'UTR	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	1879	Extracellular (Potential).|CUB 11.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		CAGCAGTGCCGGTACTGTGGT	0.393													6	21					0	0	0.003080	0	0
CSMD1	64478	broad.mit.edu	37	8	3076835	3076835	+	Silent	SNP	A	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:3076835A>G	uc011kwk.1	-	29	5007	c.4617T>C	c.(4615-4617)TTT>TTC	p.F1539F	CSMD1_uc011kwj.1_Silent_p.F931F|CSMD1_uc003wqe.2_Silent_p.F695F	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	1539	Extracellular (Potential).|CUB 9.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		GAAATGCCAGAAACAGGCTGT	0.478													2	7					0	0	0.004672	0	0
CSMD1	64478	broad.mit.edu	37	8	3081268	3081268	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:3081268G>A	uc011kwk.1	-	28	4860	c.4470C>T	c.(4468-4470)ATC>ATT	p.I1490I	CSMD1_uc011kwj.1_Silent_p.I882I|CSMD1_uc003wqe.2_Silent_p.I646I	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	1490	Extracellular (Potential).|CUB 9.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		ATATCAAGGCGATGACAAAGT	0.428													14	55					0	0	0.004007	0	0
CSMD1	64478	broad.mit.edu	37	8	3141814	3141814	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:3141814C>T	uc011kwk.1	-	26	4398	c.4008G>A	c.(4006-4008)TGG>TGA	p.W1336*	CSMD1_uc011kwj.1_Nonsense_Mutation_p.W728*|CSMD1_uc003wqe.2_Nonsense_Mutation_p.W492*	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	1336	Extracellular (Potential).|CUB 8.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		CCGGCCCGTCCCAGACCTTGA	0.572											OREG0018505	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	10	18					0	0	0.003163	0	0
CSMD1	64478	broad.mit.edu	37	8	3165891	3165891	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:3165891G>A	uc011kwk.1	-	24	4159	c.3769C>T	c.(3769-3771)CTG>TTG	p.L1257L	CSMD1_uc011kwj.1_Silent_p.L649L|CSMD1_uc003wqe.2_Silent_p.L413L	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	1257	Extracellular (Potential).|Sushi 7.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		AAACAGGTCAGGGTGTTGCTG	0.527													9	15					0	0	0.004482	0	0
CSMD1	64478	broad.mit.edu	37	8	3566012	3566012	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:3566012C>T	uc011kwk.1	-	7	1323	c.933G>A	c.(931-933)GTG>GTA	p.V311V		NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	311	Extracellular (Potential).|CUB 2.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		TCGCCTTTTTCACTGGAAGAA	0.428													4	27					0	0	0.009096	0	0
DEFA6	1671	broad.mit.edu	37	8	6782399	6782399	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:6782399C>T	uc003wqt.2	-	2	285	c.244G>A	c.(244-246)GAA>AAA	p.E82K		NM_001926	NP_001917	Q01524	DEF6_HUMAN	defensin, alpha 6 preproprotein	82					defense response to bacterium|defense response to fungus|killing of cells of other organism	extracellular space					0			STAD - Stomach adenocarcinoma(24;0.0322)	COAD - Colon adenocarcinoma(149;0.0572)|READ - Rectum adenocarcinoma(644;0.121)		TAGGAATATTCTGTTGAATAA	0.448													23	45					0	0	0.003954	0	0
DEFA6	1671	broad.mit.edu	37	8	6782404	6782404	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:6782404G>A	uc003wqt.2	-	2	280	c.239C>T	c.(238-240)TCA>TTA	p.S80L		NM_001926	NP_001917	Q01524	DEF6_HUMAN	defensin, alpha 6 preproprotein	80					defense response to bacterium|defense response to fungus|killing of cells of other organism	extracellular space					0			STAD - Stomach adenocarcinoma(24;0.0322)	COAD - Colon adenocarcinoma(149;0.0572)|READ - Rectum adenocarcinoma(644;0.121)		ATATTCTGTTGAATAACAGGA	0.468													21	44					0	0	0.003330	0	0
PPP1R3B	79660	broad.mit.edu	37	8	8999144	8999144	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:8999144G>A	uc003wsn.3	-	2	183	c.18C>T	c.(16-18)ATC>ATT	p.I6I	PPP1R3B_uc003wso.3_Silent_p.I5I	NM_024607	NP_078883	Q86XI6	PPR3B_HUMAN	protein phosphatase 1, regulatory (inhibitor)	6					glycogen metabolic process					ovary(1)|skin(1)	2				COAD - Colon adenocarcinoma(149;0.0717)|READ - Rectum adenocarcinoma(644;0.241)		ATCTGTACTCGATGTCCACAG	0.483													12	14					0	0	0.001855	0	0
RP1L1	94137	broad.mit.edu	37	8	10468882	10468882	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:10468882C>T	uc003wtc.2	-	4	2955	c.2726G>A	c.(2725-2727)AGG>AAG	p.R909K		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	909					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		ACTGCTTCTCCTTGATGCCCC	0.711													3	14					0	0	0.004672	0	0
RP1L1	94137	broad.mit.edu	37	8	10470431	10470431	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:10470431C>T	uc003wtc.2	-	4	1406	c.1177G>A	c.(1177-1179)GAA>AAA	p.E393K		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	393					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		CCAAAGACTTCCCTGCATCCC	0.657													34	52					0	0	0.004878	0	0
RP1L1	94137	broad.mit.edu	37	8	10473967	10473967	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:10473967C>T	uc003wtc.2	-	3	969	c.740G>A	c.(739-741)AGA>AAA	p.R247K		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	247					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		GTTTTTGTTTCTTGAAGTCAG	0.512													21	38					0	0	0.014323	0	0
SOX7	83595	broad.mit.edu	37	8	10583780	10583781	+	Missense_Mutation	DNP	AC	TT	TT			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:10583780_10583781AC>TT	uc003wtf.2	-	2	713_714	c.634_635GT>AA	c.(634-636)GTG>AAG	p.V212K	SOX7_uc011kwz.1_Missense_Mutation_p.V264K	NM_031439	NP_113627	Q9BT81	SOX7_HUMAN	SRY-box 7	212					endoderm formation|negative regulation of cell proliferation|negative regulation of transcription, DNA-dependent|positive regulation of caspase activity|regulation of canonical Wnt receptor signaling pathway	cytoplasm|nucleus	transcription regulatory region DNA binding			breast(1)	1				COAD - Colon adenocarcinoma(149;0.0732)		CGGCTCCAGCACGTCCAGGGGA	0.703													11	31					0	0	0.004672	0	0
AMAC1L2	83650	broad.mit.edu	37	8	11188688	11188688	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:11188688C>T	uc003wtp.1	+	1	194	c.73C>T	c.(73-75)CTC>TTC	p.L25F		NM_054028	NP_473369	Q96KT7	AMCL2_HUMAN	acyl-malonyl condensing enzyme	25						integral to membrane					0			STAD - Stomach adenocarcinoma(15;0.00676)	COAD - Colon adenocarcinoma(149;0.0563)		TCCACCCAGCCTCCGCTGGCA	0.667													13	53					0	0	0.001855	0	0
AMAC1L2	83650	broad.mit.edu	37	8	11189494	11189494	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:11189494C>T	uc003wtp.1	+	1	1000	c.879C>T	c.(877-879)GCC>GCT	p.A293A		NM_054028	NP_473369	Q96KT7	AMCL2_HUMAN	acyl-malonyl condensing enzyme	293	DUF6 2.|Helical; (Potential).					integral to membrane					0			STAD - Stomach adenocarcinoma(15;0.00676)	COAD - Colon adenocarcinoma(149;0.0563)		TGGTTGTGGCCCTTATACTGC	0.572													52	81					0	0	0.014410	0	0
GATA4	2626	broad.mit.edu	37	8	11606581	11606581	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:11606581C>T	uc003wuc.2	+	3	1324	c.770C>T	c.(769-771)CCT>CTT	p.P257L	GATA4_uc003wub.1_Missense_Mutation_p.P51L|GATA4_uc011kxc.1_Missense_Mutation_p.P258L	NM_002052	NP_002043	P43694	GATA4_HUMAN	GATA binding protein 4	257					atrial septum primum morphogenesis|atrial septum secundum morphogenesis|blood coagulation|cardiac right ventricle morphogenesis|cell-cell signaling|embryonic foregut morphogenesis|embryonic heart tube anterior/posterior pattern formation|endocardial cushion development|endoderm development|heart looping|intestinal epithelial cell differentiation|male gonad development|positive regulation of angiogenesis|positive regulation of cardioblast differentiation|positive regulation of transcription from RNA polymerase II promoter|positive regulation vascular endothelial growth factor production|response to drug|transcription from RNA polymerase II promoter|ventricular septum development	nucleoplasm	activating transcription factor binding|sequence-specific DNA binding|transcription regulatory region DNA binding|zinc ion binding			central_nervous_system(1)	1	all_epithelial(15;0.0839)		STAD - Stomach adenocarcinoma(15;0.00225)	COAD - Colon adenocarcinoma(149;0.199)		CTCATCAAGCCTCAGCGCCGG	0.617													15	20					0	0	0.002450	0	0
USP17L2	377630	broad.mit.edu	37	8	11995285	11995285	+	Missense_Mutation	SNP	T	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:11995285T>A	uc003wvc.1	-	1	985	c.985A>T	c.(985-987)AGT>TGT	p.S329C	FAM66D_uc011kxp.1_Intron|FAM66D_uc011kxo.1_Intron	NM_201402	NP_958804	Q6R6M4	U17L2_HUMAN	deubiquitinating enzyme 3	329					apoptosis|cell cycle|G2/M transition checkpoint|mitotic cell cycle G1/S transition checkpoint|protein deubiquitination|ubiquitin-dependent protein catabolic process	nucleus	ubiquitin thiolesterase activity|ubiquitin-specific protease activity			skin(2)|upper_aerodigestive_tract(1)	3						TCGTGACAACTCCACCCAGCG	0.488													6	31					0	0	0.001984	0	0
USP17L2	377630	broad.mit.edu	37	8	11995287	11995287	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:11995287C>T	uc003wvc.1	-	1	983	c.983G>A	c.(982-984)TGG>TAG	p.W328*	FAM66D_uc011kxp.1_Intron|FAM66D_uc011kxo.1_Intron	NM_201402	NP_958804	Q6R6M4	U17L2_HUMAN	deubiquitinating enzyme 3	328					apoptosis|cell cycle|G2/M transition checkpoint|mitotic cell cycle G1/S transition checkpoint|protein deubiquitination|ubiquitin-dependent protein catabolic process	nucleus	ubiquitin thiolesterase activity|ubiquitin-specific protease activity			skin(2)|upper_aerodigestive_tract(1)	3						GTGACAACTCCACCCAGCGTG	0.488													6	29					0	0	0.001984	0	0
SGCZ	137868	broad.mit.edu	37	8	13965684	13965684	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:13965684G>A	uc003wwq.2	-	6	1268	c.608C>T	c.(607-609)TCC>TTC	p.S203F	SGCZ_uc010lss.2_Missense_Mutation_p.S156F	NM_139167	NP_631906	Q96LD1	SGCZ_HUMAN	sarcoglycan zeta	190	Extracellular (Potential).				cytoskeleton organization	cytoplasm|cytoskeleton|integral to membrane|sarcolemma				ovary(2)|central_nervous_system(1)	3				all cancers(2;0.000643)|Colorectal(111;0.00674)|COAD - Colon adenocarcinoma(73;0.0193)|GBM - Glioblastoma multiforme(2;0.026)		GAGATCTTGGGATGGCTCTGC	0.443													14	31					0	0	0.007413	0	0
MSR1	4481	broad.mit.edu	37	8	15978105	15978105	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:15978105C>T	uc003wwz.2	-	9	1242	c.1044G>A	c.(1042-1044)ACG>ACA	p.T348T	MSR1_uc010lsu.2_Silent_p.T366T|MSR1_uc003wxa.2_Intron	NM_138715	NP_619729	P21757	MSRE_HUMAN	macrophage scavenger receptor 1 isoform type 1	348	Extracellular (Potential).				cholesterol transport|plasma lipoprotein particle clearance|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis	collagen|integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|protein binding|scavenger receptor activity			ovary(1)	1				Colorectal(111;0.00475)|COAD - Colon adenocarcinoma(73;0.0164)		GTCGAACTTTCGTAAATGGAG	0.433													17	27					0	0	0.004990	0	0
MSR1	4481	broad.mit.edu	37	8	16007775	16007775	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:16007775C>T	uc003wwz.2	-	7	1142	c.944G>A	c.(943-945)GGA>GAA	p.G315E	MSR1_uc010lsu.2_Missense_Mutation_p.G333E|MSR1_uc003wxa.2_Missense_Mutation_p.G315E|MSR1_uc003wxb.2_Missense_Mutation_p.G315E|MSR1_uc011kxz.1_Missense_Mutation_p.G89E	NM_138715	NP_619729	P21757	MSRE_HUMAN	macrophage scavenger receptor 1 isoform type 1	315	Collagen-like.|Extracellular (Potential).				cholesterol transport|plasma lipoprotein particle clearance|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis	collagen|integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|protein binding|scavenger receptor activity			ovary(1)	1				Colorectal(111;0.00475)|COAD - Colon adenocarcinoma(73;0.0164)		TCCTCGACTTCCAGGAAAGCC	0.368													20	26					0	0	0.003954	0	0
MSR1	4481	broad.mit.edu	37	8	16007784	16007784	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:16007784C>T	uc003wwz.2	-	7	1133	c.935G>A	c.(934-936)GGC>GAC	p.G312D	MSR1_uc010lsu.2_Missense_Mutation_p.G330D|MSR1_uc003wxa.2_Missense_Mutation_p.G312D|MSR1_uc003wxb.2_Missense_Mutation_p.G312D|MSR1_uc011kxz.1_Missense_Mutation_p.G86D	NM_138715	NP_619729	P21757	MSRE_HUMAN	macrophage scavenger receptor 1 isoform type 1	312	Collagen-like.|Extracellular (Potential).				cholesterol transport|plasma lipoprotein particle clearance|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis	collagen|integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|protein binding|scavenger receptor activity			ovary(1)	1				Colorectal(111;0.00475)|COAD - Colon adenocarcinoma(73;0.0164)		TCCAGGAAAGCCAATTGCTCC	0.378													11	35					0	0	0.003163	0	0
MSR1	4481	broad.mit.edu	37	8	16021701	16021701	+	Missense_Mutation	SNP	T	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:16021701T>A	uc003wwz.2	-	5	888	c.690A>T	c.(688-690)AAA>AAT	p.K230N	MSR1_uc010lsu.2_Missense_Mutation_p.K248N|MSR1_uc003wxa.2_Missense_Mutation_p.K230N|MSR1_uc003wxb.2_Missense_Mutation_p.K230N|MSR1_uc011kxz.1_Missense_Mutation_p.K4N	NM_138715	NP_619729	P21757	MSRE_HUMAN	macrophage scavenger receptor 1 isoform type 1	230	Potential.|Extracellular (Potential).				cholesterol transport|plasma lipoprotein particle clearance|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis	collagen|integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|protein binding|scavenger receptor activity			ovary(1)	1				Colorectal(111;0.00475)|COAD - Colon adenocarcinoma(73;0.0164)		CTTGTTCTTCTTTCATAGCCA	0.353													11	28					0	0	0.010729	0	0
MSR1	4481	broad.mit.edu	37	8	16026228	16026228	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:16026228C>T	uc003wwz.2	-	4	567	c.369G>A	c.(367-369)AAG>AAA	p.K123K	MSR1_uc010lsu.2_Silent_p.K141K|MSR1_uc003wxa.2_Silent_p.K123K|MSR1_uc003wxb.2_Silent_p.K123K|MSR1_uc011kxz.1_Intron	NM_138715	NP_619729	P21757	MSRE_HUMAN	macrophage scavenger receptor 1 isoform type 1	123	Extracellular (Potential).				cholesterol transport|plasma lipoprotein particle clearance|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis	collagen|integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|protein binding|scavenger receptor activity			ovary(1)	1				Colorectal(111;0.00475)|COAD - Colon adenocarcinoma(73;0.0164)		GCTGGATTCTCTTCTCCATGT	0.378													34	87					0	0	0.005524	0	0
VPS37A	137492	broad.mit.edu	37	8	17132409	17132409	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:17132409C>T	uc003wxj.2	+	5	937	c.584C>T	c.(583-585)TCA>TTA	p.S195L	VPS37A_uc003wxk.2_Missense_Mutation_p.S170L|VPS37A_uc003wxl.2_5'UTR	NM_152415	NP_689628	Q8NEZ2	VP37A_HUMAN	hepatocellular carcinoma related protein 1	195					cellular membrane organization|endosome transport|protein transport	centrosome|late endosome membrane|nucleus					0				Colorectal(111;0.0553)|COAD - Colon adenocarcinoma(73;0.212)		GCCGCTCCTTCATTTGGTGTC	0.438													24	72					0	0	0.013726	0	0
NAT1	9	broad.mit.edu	37	8	18080218	18080218	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:18080218C>T	uc010ltd.2	+	5	1029	c.662C>T	c.(661-663)TCA>TTA	p.S221L	NAT1_uc003wyt.2_Missense_Mutation_p.S283L|NAT1_uc003wyu.2_Missense_Mutation_p.S221L|NAT1_uc003wyv.2_Missense_Mutation_p.S221L|NAT1_uc010ltc.2_Missense_Mutation_p.S221L|NAT1_uc003wys.2_Missense_Mutation_p.S283L|NAT1_uc003wyr.2_Missense_Mutation_p.S221L|NAT1_uc003wyq.2_Missense_Mutation_p.S221L|NAT1_uc011kyl.1_Missense_Mutation_p.S221L	NM_001160179	NP_001153651	P18440	ARY1_HUMAN	N-acetyltransferase 1 isoform a	221					xenobiotic metabolic process	cytosol	arylamine N-acetyltransferase activity				0				Colorectal(111;0.0519)|COAD - Colon adenocarcinoma(73;0.208)		ACTAGTAAATCATTTTGTTCC	0.393													9	38					0	0	0.004482	0	0
NAT2	10	broad.mit.edu	37	8	18258007	18258007	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:18258007G>A	uc003wyw.1	+	2	601	c.494G>A	c.(493-495)AGG>AAG	p.R165K		NM_000015	NP_000006	P11245	ARY2_HUMAN	N-acetyltransferase 2	165					xenobiotic metabolic process	cytosol	arylamine N-acetyltransferase activity			ovary(1)|skin(1)	2				Colorectal(111;0.0531)|COAD - Colon adenocarcinoma(73;0.21)		GACCAAATCAGGAGAGAGCAG	0.403									Naso-/Oropharyngeal/Laryngeal_Cancer_Familial_Clustering_of				8	38					0	0	0.006214	0	0
PSD3	23362	broad.mit.edu	37	8	18725306	18725306	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:18725306G>A	uc003wza.2	-	4	1615	c.1512C>T	c.(1510-1512)ATC>ATT	p.I504I		NM_015310	NP_056125	Q9NYI0	PSD3_HUMAN	ADP-ribosylation factor guanine nucleotide	504					regulation of ARF protein signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	ARF guanyl-nucleotide exchange factor activity			ovary(3)	3				Colorectal(111;0.0281)|READ - Rectum adenocarcinoma(644;0.183)		ACACACTCAGGATATCCTGAT	0.502													48	109					0	0	0.014410	0	0
INTS10	55174	broad.mit.edu	37	8	19684029	19684029	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:19684029C>T	uc003wzj.2	+	9	1230	c.1099C>T	c.(1099-1101)CAT>TAT	p.H367Y		NM_018142	NP_060612	Q9NVR2	INT10_HUMAN	integrator complex subunit 10	367					snRNA processing	integrator complex	protein binding			ovary(1)	1				Colorectal(111;0.057)|COAD - Colon adenocarcinoma(73;0.215)		TAAACACATCCATAAAAAGAG	0.388													15	35					0	0	0.002450	0	0
GFRA2	2675	broad.mit.edu	37	8	21560429	21560429	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:21560429G>A	uc003wzu.1	-	7	1781	c.1106C>T	c.(1105-1107)TCG>TTG	p.S369L	GFRA2_uc003wzv.1_Missense_Mutation_p.S264L|GFRA2_uc003wzw.1_Missense_Mutation_p.S236L	NM_001495	NP_001486	O00451	GFRA2_HUMAN	GDNF family receptor alpha 2 isoform a	369						anchored to membrane|extrinsic to membrane|plasma membrane	glial cell-derived neurotrophic factor receptor activity				0				Colorectal(74;0.0189)|COAD - Colon adenocarcinoma(73;0.0727)		GGCCTGGAACGAGGGGCCTTT	0.617													5	10					0	0	0.001168	0	0
GFRA2	2675	broad.mit.edu	37	8	21562498	21562498	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:21562498G>A	uc003wzu.1	-	6	1719	c.1044C>T	c.(1042-1044)CTC>CTT	p.L348L	GFRA2_uc003wzv.1_Silent_p.L243L|GFRA2_uc003wzw.1_Silent_p.L215L	NM_001495	NP_001486	O00451	GFRA2_HUMAN	GDNF family receptor alpha 2 isoform a	348						anchored to membrane|extrinsic to membrane|plasma membrane	glial cell-derived neurotrophic factor receptor activity				0				Colorectal(74;0.0189)|COAD - Colon adenocarcinoma(73;0.0727)		AGAACTTACGGAGGCATGGGT	0.612													6	16					0	0	0.003080	0	0
DOK2	9046	broad.mit.edu	37	8	21766993	21766993	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:21766993G>A	uc003wzy.1	-	5	1161	c.1068C>T	c.(1066-1068)CTC>CTT	p.L356L	DOK2_uc003wzx.1_Silent_p.L356L|DOK2_uc003wzz.1_Silent_p.L202L|DOK2_uc010lth.1_Silent_p.L202L	NM_003974	NP_003965	O60496	DOK2_HUMAN	docking protein 2	356	Pro-rich.				blood coagulation|leukocyte migration	cytosol	identical protein binding|insulin receptor binding				0				Colorectal(74;0.0145)|COAD - Colon adenocarcinoma(73;0.0608)		GGCTGTCATAGAGGGACAGGG	0.667													8	37					0	0	0.003080	0	0
HR	55806	broad.mit.edu	37	8	21979167	21979167	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:21979167G>A	uc003xas.2	-	9	2827	c.2162C>T	c.(2161-2163)TCC>TTC	p.S721F	HR_uc003xat.2_Missense_Mutation_p.S721F	NM_005144	NP_005135	O43593	HAIR_HUMAN	hairless protein isoform a	721							DNA binding|metal ion binding|sequence-specific DNA binding transcription factor activity			large_intestine(1)|ovary(1)	2		Breast(100;0.000162)|Acute lymphoblastic leukemia(644;0.0775)|Prostate(55;0.116)		KIRC - Kidney renal clear cell carcinoma(542;1.19e-05)|BRCA - Breast invasive adenocarcinoma(99;3.56e-05)|Colorectal(74;0.00191)|COAD - Colon adenocarcinoma(73;0.0615)|READ - Rectum adenocarcinoma(644;0.1)		GCCATTGCAGGAAGGTTGTGG	0.547													39	59					0	0	0.010771	0	0
RHOBTB2	23221	broad.mit.edu	37	8	22864607	22864607	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:22864607C>T	uc003xcq.2	+	5	1386	c.849C>T	c.(847-849)ATC>ATT	p.I283I	RHOBTB2_uc003xcp.2_Silent_p.I305I|RHOBTB2_uc011kzp.1_Silent_p.I290I|uc003xcr.2_RNA	NM_015178	NP_055993	Q9BYZ6	RHBT2_HUMAN	Rho-related BTB domain containing 2 isoform 3	283	BTB 1.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|plasma membrane	GTP binding			ovary(1)|lung(1)	2		Prostate(55;0.0513)|Breast(100;0.214)		Colorectal(74;0.0157)|COAD - Colon adenocarcinoma(73;0.064)		CCCACAAGATCTACCTCTCCA	0.662													30	72					0	0	0.008361	0	0
TNFRSF10D	8793	broad.mit.edu	37	8	22995467	22995467	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:22995467C>T	uc003xcz.1	-	9	1169	c.1077G>A	c.(1075-1077)AAG>AAA	p.K359K		NM_003840	NP_003831	Q9UBN6	TR10D_HUMAN	tumor necrosis factor receptor superfamily,	359	Death; truncated.|Cytoplasmic (Potential).				anti-apoptosis|apoptosis	integral to membrane	TRAIL binding|transmembrane receptor activity				0		Prostate(55;0.0421)|Breast(100;0.067)		Colorectal(74;0.0147)|COAD - Colon adenocarcinoma(73;0.0612)		GAATTGTTTCCTTTGCATGTC	0.493													7	26					0	0	0.003080	0	0
TNFRSF10D	8793	broad.mit.edu	37	8	23002145	23002145	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:23002145G>A	uc003xcz.1	-	7	864	c.772C>T	c.(772-774)CTT>TTT	p.L258F		NM_003840	NP_003831	Q9UBN6	TR10D_HUMAN	tumor necrosis factor receptor superfamily,	258	Cytoplasmic (Potential).				anti-apoptosis|apoptosis	integral to membrane	TRAIL binding|transmembrane receptor activity				0		Prostate(55;0.0421)|Breast(100;0.067)		Colorectal(74;0.0147)|COAD - Colon adenocarcinoma(73;0.0612)		CGCCGGAAAAGGACCTTGGGA	0.597													9	33					0	0	0.006214	0	0
TNFRSF10D	8793	broad.mit.edu	37	8	23003353	23003353	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:23003353G>A	uc003xcz.1	-	5	656	c.564C>T	c.(562-564)TCC>TCT	p.S188S		NM_003840	NP_003831	Q9UBN6	TR10D_HUMAN	tumor necrosis factor receptor superfamily,	188	Extracellular (Potential).				anti-apoptosis|apoptosis	integral to membrane	TRAIL binding|transmembrane receptor activity				0		Prostate(55;0.0421)|Breast(100;0.067)		Colorectal(74;0.0147)|COAD - Colon adenocarcinoma(73;0.0612)		TTTTCCCAGTGGAACTGGCAG	0.517													10	60					0	0	0.008291	0	0
NKX3-1	4824	broad.mit.edu	37	8	23538787	23538787	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:23538787G>A	uc011kzx.1	-	2	700	c.652C>T	c.(652-654)CCT>TCT	p.P218S	NKX3-1_uc003xdv.1_Intron	NM_006167	NP_006158	Q99801	NKX31_HUMAN	NK3 homeobox 1	218					negative regulation of estrogen receptor binding|negative regulation of transcription, DNA-dependent|positive regulation of cell division|positive regulation of mitotic cell cycle|positive regulation of transcription from RNA polymerase II promoter	nucleus	estrogen receptor activity|estrogen receptor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region sequence-specific DNA binding				0		Prostate(55;0.114)		Colorectal(74;0.0146)|COAD - Colon adenocarcinoma(73;0.061)|BRCA - Breast invasive adenocarcinoma(99;0.0708)		GGGTAGTAAGGATAGCTGTTA	0.557													23	50					0	0	0.014323	0	0
STC1	6781	broad.mit.edu	37	8	23702352	23702352	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:23702352G>A	uc003xdw.1	-	4	959	c.675C>T	c.(673-675)CTC>CTT	p.L225L		NM_003155	NP_003146	P52823	STC1_HUMAN	stanniocalcin 1 precursor	225					cell surface receptor linked signaling pathway|cell-cell signaling|cellular calcium ion homeostasis		hormone activity			skin(3)|upper_aerodigestive_tract(1)	4		Prostate(55;0.055)|Breast(100;0.116)		Colorectal(74;0.0155)|COAD - Colon adenocarcinoma(73;0.0632)		GGTTCCTGAGGAGGACTTTCA	0.547													17	39					0	0	0.007413	0	0
ADAM28	10863	broad.mit.edu	37	8	24167449	24167449	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:24167449G>A	uc003xdy.2	+	3	276	c.193G>A	c.(193-195)GGA>AGA	p.G65R	ADAM28_uc003xdx.2_Missense_Mutation_p.G65R|ADAM28_uc011kzz.1_5'UTR|ADAM28_uc011laa.1_RNA	NM_014265	NP_055080	Q9UKQ2	ADA28_HUMAN	ADAM metallopeptidase domain 28 isoform 1	65					proteolysis|spermatogenesis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|lung(1)|central_nervous_system(1)	5		Prostate(55;0.0959)		Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0434)|BRCA - Breast invasive adenocarcinoma(99;0.175)		GACAATTAATGGAAAAATTGC	0.294													10	60					0	0	0.013537	0	0
ADAM28	10863	broad.mit.edu	37	8	24168913	24168913	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:24168913G>A	uc003xdy.2	+	5	429	c.346G>A	c.(346-348)GTT>ATT	p.V116I	ADAM28_uc003xdx.2_Missense_Mutation_p.V116I|ADAM28_uc011kzz.1_5'UTR|ADAM28_uc011laa.1_RNA	NM_014265	NP_055080	Q9UKQ2	ADA28_HUMAN	ADAM metallopeptidase domain 28 isoform 1	116					proteolysis|spermatogenesis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|lung(1)|central_nervous_system(1)	5		Prostate(55;0.0959)		Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0434)|BRCA - Breast invasive adenocarcinoma(99;0.175)		TAATGAAAAGGTTTCTGACGC	0.373													17	35					0	0	0.010504	0	0
ADAM28	10863	broad.mit.edu	37	8	24181412	24181412	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:24181412G>A	uc003xdy.2	+	9	869	c.786G>A	c.(784-786)AAG>AAA	p.K262K	ADAM28_uc003xdx.2_Silent_p.K262K|ADAM28_uc011kzz.1_Silent_p.K29K|ADAM28_uc011laa.1_RNA|ADAM28_uc010lua.2_5'Flank	NM_014265	NP_055080	Q9UKQ2	ADA28_HUMAN	ADAM metallopeptidase domain 28 isoform 1	262	Peptidase M12B.|Extracellular (Potential).				proteolysis|spermatogenesis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|lung(1)|central_nervous_system(1)	5		Prostate(55;0.0959)		Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0434)|BRCA - Breast invasive adenocarcinoma(99;0.175)		ACAAGGATAAGATAAAGATAA	0.368													12	29					0	0	0.013537	0	0
ADAM28	10863	broad.mit.edu	37	8	24187614	24187614	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:24187614G>A	uc003xdy.2	+	11	1172	c.1089G>A	c.(1087-1089)ATG>ATA	p.M363I	ADAM28_uc003xdx.2_Missense_Mutation_p.M363I|ADAM28_uc011kzz.1_Missense_Mutation_p.M130I|ADAM28_uc011laa.1_RNA|ADAM28_uc010lua.2_Missense_Mutation_p.M50I	NM_014265	NP_055080	Q9UKQ2	ADA28_HUMAN	ADAM metallopeptidase domain 28 isoform 1	363	Peptidase M12B.|Extracellular (Potential).				proteolysis|spermatogenesis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|lung(1)|central_nervous_system(1)	5		Prostate(55;0.0959)		Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0434)|BRCA - Breast invasive adenocarcinoma(99;0.175)		TATGTGTGATGGACAAAGCAC	0.468													27	47					0	0	0.007291	0	0
ADAM28	10863	broad.mit.edu	37	8	24193068	24193068	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:24193068G>A	uc003xdy.2	+	14	1564	c.1481G>A	c.(1480-1482)GGC>GAC	p.G494D	ADAM28_uc003xdx.2_Missense_Mutation_p.G494D|ADAM28_uc011kzz.1_Missense_Mutation_p.G261D|ADAM28_uc011laa.1_RNA|ADAM28_uc010lua.2_Missense_Mutation_p.G181D	NM_014265	NP_055080	Q9UKQ2	ADA28_HUMAN	ADAM metallopeptidase domain 28 isoform 1	494	Extracellular (Potential).|Cys-rich.				proteolysis|spermatogenesis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|lung(1)|central_nervous_system(1)	5		Prostate(55;0.0959)		Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0434)|BRCA - Breast invasive adenocarcinoma(99;0.175)		CAAGTCAATGGCTTCCCTTGC	0.527													8	16					0	0	0.003080	0	0
ADAMDEC1	27299	broad.mit.edu	37	8	24251645	24251645	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:24251645G>A	uc003xdz.2	+	4	568	c.348G>A	c.(346-348)ACG>ACA	p.T116T	ADAMDEC1_uc010lub.2_Silent_p.T37T|ADAMDEC1_uc011lab.1_Silent_p.T37T	NM_014479	NP_055294	O15204	ADEC1_HUMAN	ADAM-like, decysin 1 isoform 1	116					integrin-mediated signaling pathway|negative regulation of cell adhesion|proteolysis	extracellular region|integral to membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			skin(2)	2		Prostate(55;0.0181)		Colorectal(74;0.016)|COAD - Colon adenocarcinoma(73;0.0646)|BRCA - Breast invasive adenocarcinoma(99;0.168)		AAATTACCACGAAACCTGAGA	0.458													17	16					0	0	0.007413	0	0
ADAMDEC1	27299	broad.mit.edu	37	8	24253266	24253266	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:24253266G>A	uc003xdz.2	+	5	617	c.397G>A	c.(397-399)GAA>AAA	p.E133K	ADAMDEC1_uc010lub.2_Missense_Mutation_p.E54K|ADAMDEC1_uc011lab.1_Missense_Mutation_p.E54K	NM_014479	NP_055294	O15204	ADEC1_HUMAN	ADAM-like, decysin 1 isoform 1	133					integrin-mediated signaling pathway|negative regulation of cell adhesion|proteolysis	extracellular region|integral to membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			skin(2)	2		Prostate(55;0.0181)		Colorectal(74;0.016)|COAD - Colon adenocarcinoma(73;0.0646)|BRCA - Breast invasive adenocarcinoma(99;0.168)		CATCCTAAATGAAAAGAATTC	0.289													8	30					0	0	0.006214	0	0
ADAMDEC1	27299	broad.mit.edu	37	8	24261589	24261589	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:24261589C>T	uc003xdz.2	+	13	1614	c.1394C>T	c.(1393-1395)CCA>CTA	p.P465L	ADAMDEC1_uc010lub.2_Missense_Mutation_p.P386L|ADAMDEC1_uc011lab.1_Missense_Mutation_p.P386L	NM_014479	NP_055294	O15204	ADEC1_HUMAN	ADAM-like, decysin 1 isoform 1	465	Disintegrin.				integrin-mediated signaling pathway|negative regulation of cell adhesion|proteolysis	extracellular region|integral to membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			skin(2)	2		Prostate(55;0.0181)		Colorectal(74;0.016)|COAD - Colon adenocarcinoma(73;0.0646)|BRCA - Breast invasive adenocarcinoma(99;0.168)		GGAGATGCTCCAAACCATACC	0.408													5	33					0	0	0.000602	0	0
ADAM7	8756	broad.mit.edu	37	8	24346778	24346778	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:24346778C>T	uc003xeb.2	+	12	1311	c.1198C>T	c.(1198-1200)CAT>TAT	p.H400Y	ADAM7_uc003xec.2_Missense_Mutation_p.H172Y	NM_003817	NP_003808	Q9H2U9	ADAM7_HUMAN	a disintegrin and metalloproteinase domain 7	400	Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(1)|kidney(1)	5		Prostate(55;0.0181)		Colorectal(74;0.0199)|COAD - Colon adenocarcinoma(73;0.0754)|BRCA - Breast invasive adenocarcinoma(99;0.182)		TTACAATTTTCATGATTTCCA	0.388													9	31					0	0	0.006214	0	0
NEFM	4741	broad.mit.edu	37	8	24772225	24772225	+	Nonsense_Mutation	SNP	A	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:24772225A>T	uc003xed.3	+	1	952	c.919A>T	c.(919-921)AAG>TAG	p.K307*	NEFM_uc011lac.1_Nonsense_Mutation_p.K307*|NEFM_uc010lue.2_5'Flank|uc010luc.1_5'UTR	NM_005382	NP_005373	P07197	NFM_HUMAN	neurofilament, medium polypeptide 150kDa isoform	307	Rod.|Coil 2B.					neurofilament	protein binding|structural constituent of cytoskeleton			breast(1)	1		Prostate(55;0.157)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0197)|Epithelial(17;2.44e-10)|Colorectal(74;0.0108)|COAD - Colon adenocarcinoma(73;0.0375)		CGAGCAGAACAAGGAGGCCAT	0.627													13	12					0	0	0.002450	0	0
EBF2	64641	broad.mit.edu	37	8	25747281	25747281	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:25747281G>A	uc003xes.1	-	8	755	c.738C>T	c.(736-738)CTC>CTT	p.L246L	PPP2R2A_uc003xek.2_Intron|EBF2_uc010lug.1_5'Flank	NM_022659	NP_073150	Q9HAK2	COE2_HUMAN	early B-cell factor 2	246					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|metal ion binding			ovary(3)|skin(1)	4		all_cancers(63;0.0989)|Ovarian(32;2.74e-05)|all_epithelial(46;0.0608)|Prostate(55;0.0845)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0277)|Epithelial(17;3.29e-10)|Colorectal(74;0.00383)|COAD - Colon adenocarcinoma(73;0.00738)		CCGATGGATCGAGTCTTCTTG	0.463													17	33					0	0	0.012319	0	0
PTK2B	2185	broad.mit.edu	37	8	27315813	27315813	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:27315813C>T	uc003xfn.1	+	36	3625	c.2817C>T	c.(2815-2817)ATC>ATT	p.I939I	PTK2B_uc003xfo.1_Silent_p.I939I|PTK2B_uc003xfp.1_Silent_p.I939I|PTK2B_uc003xfq.1_Silent_p.I897I	NM_173174	NP_775266	Q14289	FAK2_HUMAN	PTK2B protein tyrosine kinase 2 beta isoform a	939	Focal adhesion targeting (FAT).|Interaction with TGFB1I1 (By similarity).				apoptosis|bone resorption|positive regulation of cell proliferation|signal complex assembly	cytosol	ATP binding|non-membrane spanning protein tyrosine kinase activity|signal transducer activity			lung(3)|ovary(1)|skin(1)	5		Ovarian(32;2.72e-05)		UCEC - Uterine corpus endometrioid carcinoma (27;0.023)|Epithelial(17;6.61e-10)|BRCA - Breast invasive adenocarcinoma(99;0.226)|Colorectal(74;0.229)		TCCTACAGATCGAGGGCACCC	0.557													7	18					0	0	0.004482	0	0
CLU	1191	broad.mit.edu	37	8	27456060	27456060	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:27456060G>A	uc003xfw.1	-	7	1315	c.1257C>T	c.(1255-1257)GTC>GTT	p.V419V	CLU_uc010lux.1_Silent_p.V284V|CLU_uc003xfx.1_Silent_p.V419V|CLU_uc003xfy.1_Silent_p.V430V|CLU_uc003xfz.1_Silent_p.V471V	NM_203339	NP_976084	P10909	CLUS_HUMAN	clusterin isoform 2	419					chaperone-mediated protein folding|complement activation, classical pathway|innate immune response|lipid metabolic process|negative regulation of apoptosis|negative regulation of protein homooligomerization|platelet activation|platelet degranulation|positive regulation of NF-kappaB transcription factor activity|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|protein stabilization|response to misfolded protein|response to virus|reverse cholesterol transport	chromaffin granule|cytosol|endoplasmic reticulum|microsome|mitochondrial membrane|nucleus|perinuclear region of cytoplasm|platelet alpha granule lumen|spherical high-density lipoprotein particle	misfolded protein binding|ubiquitin protein ligase binding			ovary(2)	2		Ovarian(32;2.61e-05)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0204)|Colorectal(74;0.132)		CTTCTACAGGGACCGTCACAG	0.542													9	70					0	0	0.006214	0	0
SCARA3	51435	broad.mit.edu	37	8	27516524	27516524	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:27516524C>T	uc003xga.1	+	5	978	c.837C>T	c.(835-837)ATC>ATT	p.I279I	SCARA3_uc003xgb.1_Silent_p.I279I	NM_016240	NP_057324	Q6AZY7	SCAR3_HUMAN	scavenger receptor class A, member 3 isoform 1	279	Extracellular (Potential).				response to oxidative stress|UV protection	collagen|endoplasmic reticulum membrane|Golgi membrane|integral to membrane	scavenger receptor activity			skin(2)|ovary(1)|breast(1)	4		Ovarian(32;2.61e-05)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0219)|Colorectal(74;0.148)		TCAAGAACATCCAGGCCACCC	0.602													12	23					0	0	0.010729	0	0
C8orf80	389643	broad.mit.edu	37	8	27880884	27880884	+	Missense_Mutation	SNP	G	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:27880884G>T	uc003xgm.3	-	19	2484	c.2341C>A	c.(2341-2343)CTC>ATC	p.L781I		NM_001010906	NP_001010906	Q68CJ6	SLIP_HUMAN	speckled-like pattern in the germinal center	781						nucleus	GTP binding|GTPase activity			ovary(1)|central_nervous_system(1)	2		Ovarian(32;0.0218)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0228)|KIRC - Kidney renal clear cell carcinoma(542;0.126)|Kidney(114;0.15)|Colorectal(74;0.181)		GCCCTTAGGAGGAATTCTTGC	0.562													5	28					0.000602214	0.000642832	0.000602	1	0
EXTL3	2137	broad.mit.edu	37	8	28574866	28574866	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:28574866C>T	uc003xgz.1	+	3	1883	c.1290C>T	c.(1288-1290)TTC>TTT	p.F430F		NM_001440	NP_001431	O43909	EXTL3_HUMAN	exostoses-like 3	430	Lumenal (Potential).					integral to membrane|intrinsic to endoplasmic reticulum membrane	glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity|metal ion binding|protein binding			skin(2)	2		Ovarian(32;0.069)		KIRC - Kidney renal clear cell carcinoma(542;0.107)|Kidney(114;0.129)|Colorectal(74;0.228)		TCTCCACCTTCGCCCTCATCA	0.602													9	22					0	0	0.004482	0	0
KIF13B	23303	broad.mit.edu	37	8	29043831	29043831	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:29043831G>A	uc003xhh.3	-	6	534	c.475C>T	c.(475-477)CGA>TGA	p.R159*	KIF13B_uc003xhj.2_Nonsense_Mutation_p.R56*|KIF13B_uc010lvf.1_Nonsense_Mutation_p.R95*	NM_015254	NP_056069	Q9NQT8	KI13B_HUMAN	kinesin family member 13B	159	Kinesin-motor.				microtubule-based movement|protein targeting|signal transduction|T cell activation	cytoplasm|microtubule	ATP binding|microtubule motor activity|protein kinase binding				0		Ovarian(32;0.000536)		KIRC - Kidney renal clear cell carcinoma(542;0.152)|Kidney(114;0.181)		AGAAGGTCTCGAACTTTTTCA	0.353													49	92					0	0	0.014410	0	0
TEX15	56154	broad.mit.edu	37	8	30694351	30694351	+	Missense_Mutation	SNP	C	T	T	rs112222282	byFrequency	TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:30694351C>T	uc003xil.2	-	3	8300	c.8300G>A	c.(8299-8301)CGA>CAA	p.R2767Q		NM_031271	NP_112561	Q9BXT5	TEX15_HUMAN	testis expressed 15	2767										ovary(3)|upper_aerodigestive_tract(2)|skin(2)	7				KIRC - Kidney renal clear cell carcinoma(542;0.0918)|Kidney(114;0.111)		AGGCACAAATCGATTAGGAAG	0.378													17	19					0	0	0.008871	0	0
TEX15	56154	broad.mit.edu	37	8	30695200	30695200	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:30695200G>A	uc003xil.2	-	3	7451	c.7451C>T	c.(7450-7452)TCC>TTC	p.S2484F		NM_031271	NP_112561	Q9BXT5	TEX15_HUMAN	testis expressed 15	2484										ovary(3)|upper_aerodigestive_tract(2)|skin(2)	7				KIRC - Kidney renal clear cell carcinoma(542;0.0918)|Kidney(114;0.111)		GGGATCTGGGGAATTTTTAAG	0.413													23	48					0	0	0.003330	0	0
TEX15	56154	broad.mit.edu	37	8	30699863	30699863	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:30699863C>T	uc003xil.2	-	1	6671	c.6671G>A	c.(6670-6672)GGA>GAA	p.G2224E		NM_031271	NP_112561	Q9BXT5	TEX15_HUMAN	testis expressed 15	2224										ovary(3)|upper_aerodigestive_tract(2)|skin(2)	7				KIRC - Kidney renal clear cell carcinoma(542;0.0918)|Kidney(114;0.111)		GGCCATTTTTCCTAAATCTTT	0.348													28	51					0	0	0.012213	0	0
TEX15	56154	broad.mit.edu	37	8	30699874	30699874	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:30699874C>T	uc003xil.2	-	1	6660	c.6660G>A	c.(6658-6660)AGG>AGA	p.R2220R		NM_031271	NP_112561	Q9BXT5	TEX15_HUMAN	testis expressed 15	2220										ovary(3)|upper_aerodigestive_tract(2)|skin(2)	7				KIRC - Kidney renal clear cell carcinoma(542;0.0918)|Kidney(114;0.111)		CTAAATCTTTCCTAGGGGCAG	0.338													19	59					0	0	0.006122	0	0
TEX15	56154	broad.mit.edu	37	8	30701332	30701332	+	Silent	SNP	T	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:30701332T>G	uc003xil.2	-	1	5202	c.5202A>C	c.(5200-5202)CCA>CCC	p.P1734P		NM_031271	NP_112561	Q9BXT5	TEX15_HUMAN	testis expressed 15	1734										ovary(3)|upper_aerodigestive_tract(2)|skin(2)	7				KIRC - Kidney renal clear cell carcinoma(542;0.0918)|Kidney(114;0.111)		GAAATCCACGTGGTTTTCCAA	0.363													9	39					0	0	0.006214	0	0
TEX15	56154	broad.mit.edu	37	8	30706008	30706008	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:30706008C>T	uc003xil.2	-	1	526	c.526G>A	c.(526-528)GAG>AAG	p.E176K		NM_031271	NP_112561	Q9BXT5	TEX15_HUMAN	testis expressed 15	176										ovary(3)|upper_aerodigestive_tract(2)|skin(2)	7				KIRC - Kidney renal clear cell carcinoma(542;0.0918)|Kidney(114;0.111)		TGAGCCTTCTCCTCACTGTGG	0.423													7	41					0	0	0.003080	0	0
TEX15	56154	broad.mit.edu	37	8	30706067	30706067	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:30706067G>A	uc003xil.2	-	1	467	c.467C>T	c.(466-468)TCC>TTC	p.S156F		NM_031271	NP_112561	Q9BXT5	TEX15_HUMAN	testis expressed 15	156										ovary(3)|upper_aerodigestive_tract(2)|skin(2)	7				KIRC - Kidney renal clear cell carcinoma(542;0.0918)|Kidney(114;0.111)		AATTGGGAAGGAAAAATTACC	0.458													18	37					0	0	0.004990	0	0
WRN	7486	broad.mit.edu	37	8	31015025	31015025	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:31015025C>T	uc003xio.3	+	33	4749	c.3961C>T	c.(3961-3963)CGA>TGA	p.R1321*	WRN_uc010lvk.2_Nonsense_Mutation_p.R788*	NM_000553	NP_000544	Q14191	WRN_HUMAN	Werner syndrome protein	1321					base-excision repair|cellular response to starvation|DNA recombination|DNA synthesis involved in DNA repair|multicellular organismal aging|nucleolus to nucleoplasm transport|positive regulation of hydrolase activity|regulation of apoptosis|replication fork processing|response to oxidative stress|response to UV-C|telomere maintenance	centrosome|nucleolus|nucleoplasm	3'-5' exonuclease activity|ATP binding|ATP-dependent 3'-5' DNA helicase activity|bubble DNA binding|four-way junction helicase activity|G-quadruplex DNA binding|magnesium ion binding|manganese ion binding|protein complex binding|protein homodimerization activity|Y-form DNA binding			ovary(2)|kidney(2)|large_intestine(1)|lung(1)|skin(1)	7		Breast(100;0.195)		KIRC - Kidney renal clear cell carcinoma(542;0.147)|Kidney(114;0.176)|Colorectal(111;0.192)		TGATGTTATCCGAAACCCTCC	0.483			Mis|N|F|S			osteosarcoma|meningioma|others		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Werner_syndrome				7	21					0	0	0.003080	0	0
NRG1	3084	broad.mit.edu	37	8	32472036	32472036	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:32472036C>T	uc003xiv.2	+	4	922	c.405C>T	c.(403-405)ATC>ATT	p.I135I	NRG1_uc003xip.2_Intron|NRG1_uc003xir.2_Silent_p.I135I|NRG1_uc010lvl.2_Silent_p.I135I|NRG1_uc010lvm.2_Intron|NRG1_uc010lvn.2_Intron|NRG1_uc003xis.2_Silent_p.I135I|NRG1_uc011lbf.1_Silent_p.I135I|NRG1_uc010lvo.2_Silent_p.I135I|NRG1_uc003xiu.2_Silent_p.I135I|NRG1_uc003xiw.2_Silent_p.I135I|NRG1_uc003xit.2_Silent_p.I135I|NRG1_uc010lvr.2_5'UTR|NRG1_uc010lvs.2_Intron|NRG1_uc010lvp.2_Silent_p.I101I|NRG1_uc010lvq.2_Intron|NRG1_uc003xix.2_Silent_p.I25I	NM_013964	NP_039258	Q02297	NRG1_HUMAN	neuregulin 1 isoform HRG-alpha	135	Extracellular (Potential).				activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|cardiac muscle cell differentiation|cell communication|cell proliferation|cellular protein complex disassembly|embryo development|mammary gland development|negative regulation of cardiac muscle cell apoptosis|negative regulation of secretion|negative regulation of transcription, DNA-dependent|nervous system development|neural crest cell development|Notch signaling pathway|positive regulation of cardiac muscle cell proliferation|positive regulation of cell adhesion|positive regulation of cell growth|positive regulation of striated muscle cell differentiation|regulation of protein heterodimerization activity|regulation of protein homodimerization activity|transmembrane receptor protein tyrosine kinase signaling pathway|ventricular cardiac muscle cell differentiation|wound healing|wound healing	apical plasma membrane|extracellular region|extracellular space|integral to membrane|nucleus|plasma membrane	cytokine activity|ErbB-3 class receptor binding|growth factor activity|growth factor activity|protein binding|protein tyrosine kinase activator activity|receptor tyrosine kinase binding|transcription cofactor activity|transmembrane receptor protein tyrosine kinase activator activity				0		Breast(100;0.203)		KIRC - Kidney renal clear cell carcinoma(67;0.0768)|Kidney(114;0.0943)		TTTCAGAGATCATCACTGGTA	0.418													7	62					0	0	0.004482	0	0
UNC5D	137970	broad.mit.edu	37	8	35453116	35453116	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:35453116C>T	uc003xjr.1	+	4	839	c.511C>T	c.(511-513)CCC>TCC	p.P171S	UNC5D_uc003xjs.1_Missense_Mutation_p.P166S	NM_080872	NP_543148	Q6UXZ4	UNC5D_HUMAN	unc-5 homolog D precursor	171	Extracellular (Potential).|Ig-like C2-type.				apoptosis|axon guidance	integral to membrane	receptor activity			upper_aerodigestive_tract(2)|ovary(2)|pancreas(1)|skin(1)	6				READ - Rectum adenocarcinoma(1;1.31e-05)|Colorectal(1;0.000723)		AAGGGAAGTTCCCATTGAAGG	0.493													31	89					0	0	0.013726	0	0
UNC5D	137970	broad.mit.edu	37	8	35606087	35606087	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:35606087C>T	uc003xjr.1	+	12	2137	c.1809C>T	c.(1807-1809)GTC>GTT	p.V603V	UNC5D_uc003xjs.1_Silent_p.V598V|UNC5D_uc003xju.1_Silent_p.V179V	NM_080872	NP_543148	Q6UXZ4	UNC5D_HUMAN	unc-5 homolog D precursor	603	ZU5.|Cytoplasmic (Potential).				apoptosis|axon guidance	integral to membrane	receptor activity			upper_aerodigestive_tract(2)|ovary(2)|pancreas(1)|skin(1)	6				READ - Rectum adenocarcinoma(1;1.31e-05)|Colorectal(1;0.000723)		GTCCTGAAGTCACCTGTGGTC	0.478													21	58					0	0	0.003330	0	0
KCNU1	157855	broad.mit.edu	37	8	36641933	36641933	+	Missense_Mutation	SNP	T	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:36641933T>A	uc010lvw.2	+	1	92	c.5T>A	c.(4-6)TTT>TAT	p.F2Y	KCNU1_uc003xjw.2_RNA	NM_001031836	NP_001027006	A8MYU2	KCNU1_HUMAN	potassium channel, subfamily U, member 1	2	Extracellular (Potential).					voltage-gated potassium channel complex	binding|large conductance calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(67;0.0504)|Kidney(114;0.0634)		TCGAACATGTTTCAGACTAAG	0.458													6	14					0	0	0.001984	0	0
KCNU1	157855	broad.mit.edu	37	8	36663823	36663823	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:36663823G>A	uc010lvw.2	+	5	592	c.505G>A	c.(505-507)GAG>AAG	p.E169K	KCNU1_uc003xjw.2_RNA	NM_001031836	NP_001027006	A8MYU2	KCNU1_HUMAN	potassium channel, subfamily U, member 1	169	Helical; Name=Segment S3; (Potential).					voltage-gated potassium channel complex	binding|large conductance calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(67;0.0504)|Kidney(114;0.0634)		GTTCTGGCTGGAGATGAATTC	0.378													6	9					0	0	0.001168	0	0
PROSC	11212	broad.mit.edu	37	8	37633525	37633525	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:37633525C>T	uc003xkh.2	+	7	764	c.687C>T	c.(685-687)TTC>TTT	p.F229F		NM_007198	NP_009129	O94903	PROSC_HUMAN	proline synthetase co-transcribed homolog	229							pyridoxal phosphate binding			central_nervous_system(1)	1		Lung NSC(58;0.174)	BRCA - Breast invasive adenocarcinoma(5;6.14e-24)|LUSC - Lung squamous cell carcinoma(8;3.5e-10)		L-Proline(DB00172)|Pyridoxal Phosphate(DB00114)	CCGCGGATTTCCAGCATGCGG	0.572													27	66					0	0	0.003954	0	0
WHSC1L1	54904	broad.mit.edu	37	8	38146187	38146187	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:38146187G>A	uc003xli.2	-	19	3837	c.3319C>T	c.(3319-3321)CCT>TCT	p.P1107S	WHSC1L1_uc011lbm.1_Missense_Mutation_p.P1107S|WHSC1L1_uc010lwe.2_Missense_Mutation_p.P1058S	NM_023034	NP_075447	Q9BZ95	NSD3_HUMAN	WHSC1L1 protein isoform long	1107	AWS.				cell differentiation|cell growth|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome	histone-lysine N-methyltransferase activity|zinc ion binding			breast(1)	1	Colorectal(12;0.000442)|Esophageal squamous(3;0.0725)	all_lung(54;0.00787)|Lung NSC(58;0.0295)|Hepatocellular(245;0.065)	Epithelial(3;3.12e-43)|all cancers(3;1.72e-38)|BRCA - Breast invasive adenocarcinoma(5;2.84e-27)|LUSC - Lung squamous cell carcinoma(2;2.79e-25)|Lung(2;5.03e-23)|COAD - Colon adenocarcinoma(9;0.0511)			AAGCCACAAGGGTTTTCATCA	0.493			T	NUP98	AML								22	58					0	0	0.014323	0	0
ADAM18	8749	broad.mit.edu	37	8	39495178	39495178	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:39495178G>A	uc003xni.2	+	9	783	c.783G>A	c.(781-783)CGG>CGA	p.R261R	ADAM18_uc010lww.2_RNA|ADAM18_uc010lwx.2_Silent_p.R237R	NM_014237	NP_055052	Q9Y3Q7	ADA18_HUMAN	a disintegrin and metalloprotease domain 18	261	Peptidase M12B.|Extracellular (Potential).				cell differentiation|multicellular organismal development|proteolysis|spermatogenesis	integral to membrane|membrane fraction	metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)|kidney(1)|skin(1)	6		all_cancers(7;1.32e-05)|all_epithelial(6;3.08e-10)|all_lung(54;0.00187)|Hepatocellular(245;0.00745)|Lung NSC(58;0.00769)|Breast(189;0.0112)	LUSC - Lung squamous cell carcinoma(45;0.000199)			CATGGAAACGGGACTATCTCA	0.363													5	31					0	0	0.001168	0	0
ADAM18	8749	broad.mit.edu	37	8	39502979	39502979	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:39502979G>A	uc003xni.2	+	11	1032	c.1032G>A	c.(1030-1032)ATG>ATA	p.M344I	ADAM18_uc010lww.2_RNA|ADAM18_uc010lwx.2_Missense_Mutation_p.M320I	NM_014237	NP_055052	Q9Y3Q7	ADA18_HUMAN	a disintegrin and metalloprotease domain 18	344	Peptidase M12B.|Extracellular (Potential).				cell differentiation|multicellular organismal development|proteolysis|spermatogenesis	integral to membrane|membrane fraction	metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)|kidney(1)|skin(1)	6		all_cancers(7;1.32e-05)|all_epithelial(6;3.08e-10)|all_lung(54;0.00187)|Hepatocellular(245;0.00745)|Lung NSC(58;0.00769)|Breast(189;0.0112)	LUSC - Lung squamous cell carcinoma(45;0.000199)			CATGCATCATGAATCATGAAG	0.303													5	35					0	0	0.000602	0	0
ADAM18	8749	broad.mit.edu	37	8	39506003	39506003	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:39506003G>A	uc003xni.2	+	12	1187	c.1187G>A	c.(1186-1188)GGG>GAG	p.G396E	ADAM18_uc010lww.2_Intron|ADAM18_uc010lwx.2_Missense_Mutation_p.G372E	NM_014237	NP_055052	Q9Y3Q7	ADA18_HUMAN	a disintegrin and metalloprotease domain 18	396	Disintegrin.|Extracellular (Potential).				cell differentiation|multicellular organismal development|proteolysis|spermatogenesis	integral to membrane|membrane fraction	metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)|kidney(1)|skin(1)	6		all_cancers(7;1.32e-05)|all_epithelial(6;3.08e-10)|all_lung(54;0.00187)|Hepatocellular(245;0.00745)|Lung NSC(58;0.00769)|Breast(189;0.0112)	LUSC - Lung squamous cell carcinoma(45;0.000199)			TGTGGTAATGGGATTTTGGAA	0.318													7	21					0	0	0.003080	0	0
ADAM2	2515	broad.mit.edu	37	8	39627020	39627020	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:39627020G>A	uc003xnj.2	-	12	1178	c.1103C>T	c.(1102-1104)TCC>TTC	p.S368F	ADAM2_uc003xnk.2_Missense_Mutation_p.S349F|ADAM2_uc011lck.1_Missense_Mutation_p.S368F|ADAM2_uc003xnl.2_Missense_Mutation_p.S242F	NM_001464	NP_001455	Q99965	ADAM2_HUMAN	ADAM metallopeptidase domain 2 proprotein	368	Extracellular (Potential).|Peptidase M12B.				cell adhesion|fusion of sperm to egg plasma membrane|proteolysis	integral to plasma membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|lung(1)	2		all_cancers(7;2.38e-28)|all_epithelial(6;8.85e-21)|all_lung(54;1.24e-07)|Lung NSC(58;1.94e-07)|Hepatocellular(245;0.00745)|Breast(189;0.00908)|Renal(179;0.0183)|Colorectal(162;0.246)	LUSC - Lung squamous cell carcinoma(45;0.000149)	READ - Rectum adenocarcinoma(644;0.0689)|Kidney(114;0.162)		AAGACACTGGGACTTCTGCTT	0.423													6	23					0	0	0.001168	0	0
ADAM2	2515	broad.mit.edu	37	8	39627032	39627032	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:39627032G>A	uc003xnj.2	-	12	1166	c.1091C>T	c.(1090-1092)TCA>TTA	p.S364L	ADAM2_uc003xnk.2_Missense_Mutation_p.S345L|ADAM2_uc011lck.1_Missense_Mutation_p.S364L|ADAM2_uc003xnl.2_Missense_Mutation_p.S238L	NM_001464	NP_001455	Q99965	ADAM2_HUMAN	ADAM metallopeptidase domain 2 proprotein	364	Extracellular (Potential).|Peptidase M12B.				cell adhesion|fusion of sperm to egg plasma membrane|proteolysis	integral to plasma membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|lung(1)	2		all_cancers(7;2.38e-28)|all_epithelial(6;8.85e-21)|all_lung(54;1.24e-07)|Lung NSC(58;1.94e-07)|Hepatocellular(245;0.00745)|Breast(189;0.00908)|Renal(179;0.0183)|Colorectal(162;0.246)	LUSC - Lung squamous cell carcinoma(45;0.000149)	READ - Rectum adenocarcinoma(644;0.0689)|Kidney(114;0.162)		CTTCTGCTTTGAAATAAAATG	0.408													10	20					0	0	0.006214	0	0
IDO1	3620	broad.mit.edu	37	8	39775453	39775453	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:39775453C>T	uc003xnm.2	+	2	261	c.147C>T	c.(145-147)CTC>CTT	p.L49L	IDO1_uc003xnn.2_RNA	NM_002164	NP_002155	P14902	I23O1_HUMAN	indoleamine 2,3-dioxygenase 1	49					female pregnancy|tryptophan catabolic process	cytosol	electron carrier activity|heme binding|indoleamine 2,3-dioxygenase activity|tryptophan 2,3-dioxygenase activity			central_nervous_system(2)	2					L-Tryptophan(DB00150)	TGCCTGATCTCATAGAGTCTG	0.323													8	27					0	0	0.003080	0	0
ANK1	286	broad.mit.edu	37	8	41552776	41552776	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:41552776C>T	uc003xok.2	-	27	3118	c.3034G>A	c.(3034-3036)GAA>AAA	p.E1012K	NKX6-3_uc010lxa.1_Intron|ANK1_uc003xoh.2_Missense_Mutation_p.E328K|ANK1_uc003xoi.2_Missense_Mutation_p.E1012K|ANK1_uc003xoj.2_Missense_Mutation_p.E1012K|ANK1_uc003xol.2_Missense_Mutation_p.E1012K|ANK1_uc003xom.2_Missense_Mutation_p.E1053K	NM_020476	NP_065209	P16157	ANK1_HUMAN	ankyrin 1 isoform 1	1012	ZU5.				axon guidance|cytoskeleton organization|exocytosis|maintenance of epithelial cell apical/basal polarity|signal transduction	basolateral plasma membrane|cytosol|sarcomere|sarcoplasmic reticulum|spectrin-associated cytoskeleton	cytoskeletal adaptor activity|enzyme binding|protein binding|spectrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(3)|lung(2)|breast(1)	9	Ovarian(28;0.00541)|Colorectal(14;0.0398)|Lung SC(25;0.211)	all_lung(54;0.000626)|Lung NSC(58;0.00245)|Esophageal squamous(32;0.0559)|Hepatocellular(245;0.0663)|Renal(179;0.188)	OV - Ovarian serous cystadenocarcinoma(14;0.000984)|Lung(22;0.00108)|Colorectal(10;0.00245)|LUSC - Lung squamous cell carcinoma(45;0.00392)|COAD - Colon adenocarcinoma(11;0.0264)			GAGCCGTTTTCGCTCCTCAGA	0.617													42	70					0	0	0.010771	0	0
ANK1	286	broad.mit.edu	37	8	41566470	41566470	+	Silent	SNP	G	A	A	rs144904116	by1000genomes	TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:41566470G>A	uc003xok.2	-	17	1908	c.1824C>T	c.(1822-1824)ATC>ATT	p.I608I	NKX6-3_uc010lxa.1_Intron|ANK1_uc003xoh.2_5'Flank|ANK1_uc003xoi.2_Silent_p.I608I|ANK1_uc003xoj.2_Silent_p.I608I|ANK1_uc003xol.2_Silent_p.I608I|ANK1_uc003xom.2_Silent_p.I641I	NM_020476	NP_065209	P16157	ANK1_HUMAN	ankyrin 1 isoform 1	608	ANK 18.|89 kDa domain.				axon guidance|cytoskeleton organization|exocytosis|maintenance of epithelial cell apical/basal polarity|signal transduction	basolateral plasma membrane|cytosol|sarcomere|sarcoplasmic reticulum|spectrin-associated cytoskeleton	cytoskeletal adaptor activity|enzyme binding|protein binding|spectrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(3)|lung(2)|breast(1)	9	Ovarian(28;0.00541)|Colorectal(14;0.0398)|Lung SC(25;0.211)	all_lung(54;0.000626)|Lung NSC(58;0.00245)|Esophageal squamous(32;0.0559)|Hepatocellular(245;0.0663)|Renal(179;0.188)	OV - Ovarian serous cystadenocarcinoma(14;0.000984)|Lung(22;0.00108)|Colorectal(10;0.00245)|LUSC - Lung squamous cell carcinoma(45;0.00392)|COAD - Colon adenocarcinoma(11;0.0264)			GCTTGGCAGCGATGTGCAAAG	0.577													13	28					0	0	0.001855	0	0
ANK1	286	broad.mit.edu	37	8	41581147	41581147	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:41581147C>T	uc003xok.2	-	8	800	c.716G>A	c.(715-717)GGC>GAC	p.G239D	NKX6-3_uc010lxa.1_Intron|ANK1_uc003xoi.2_Missense_Mutation_p.G239D|ANK1_uc003xoj.2_Missense_Mutation_p.G239D|ANK1_uc003xol.2_Missense_Mutation_p.G239D|ANK1_uc003xom.2_Missense_Mutation_p.G272D	NM_020476	NP_065209	P16157	ANK1_HUMAN	ankyrin 1 isoform 1	239	ANK 7.|89 kDa domain.				axon guidance|cytoskeleton organization|exocytosis|maintenance of epithelial cell apical/basal polarity|signal transduction	basolateral plasma membrane|cytosol|sarcomere|sarcoplasmic reticulum|spectrin-associated cytoskeleton	cytoskeletal adaptor activity|enzyme binding|protein binding|spectrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(3)|lung(2)|breast(1)	9	Ovarian(28;0.00541)|Colorectal(14;0.0398)|Lung SC(25;0.211)	all_lung(54;0.000626)|Lung NSC(58;0.00245)|Esophageal squamous(32;0.0559)|Hepatocellular(245;0.0663)|Renal(179;0.188)	OV - Ovarian serous cystadenocarcinoma(14;0.000984)|Lung(22;0.00108)|Colorectal(10;0.00245)|LUSC - Lung squamous cell carcinoma(45;0.00392)|COAD - Colon adenocarcinoma(11;0.0264)			TGGCGTGATGCCGTTCTGAAG	0.642													7	40					0	0	0.001984	0	0
MYST3	7994	broad.mit.edu	37	8	41801318	41801318	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:41801318C>T	uc010lxb.2	-	14	2720	c.2176G>A	c.(2176-2178)GAC>AAC	p.D726N	MYST3_uc010lxc.2_Missense_Mutation_p.D726N|MYST3_uc003xon.3_Missense_Mutation_p.D726N|MYST3_uc010lxd.2_Missense_Mutation_p.D726N	NM_001099412	NP_001092882	Q92794	MYST3_HUMAN	MYST histone acetyltransferase (monocytic	726	Mediates interaction with BRPF1, required for histone H3 acetyltransferase activity.|Catalytic.				histone H3 acetylation|myeloid cell differentiation|negative regulation of transcription, DNA-dependent|nucleosome assembly|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MOZ/MORF histone acetyltransferase complex|nucleosome	DNA binding|histone acetyltransferase activity|transcription coactivator activity|transcription factor binding|zinc ion binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7	all_epithelial(6;1.12e-27)|all_lung(13;3.94e-12)|Lung NSC(13;6.54e-11)|Ovarian(28;0.00744)|Prostate(17;0.0119)|Colorectal(14;0.0221)|Lung SC(25;0.211)	all_lung(54;0.000294)|Lung NSC(58;0.00105)|Hepatocellular(245;0.0524)|Esophageal squamous(32;0.0954)|Renal(179;0.0983)	Epithelial(1;2.82e-19)|all cancers(1;1.15e-16)|BRCA - Breast invasive adenocarcinoma(8;9.17e-11)|OV - Ovarian serous cystadenocarcinoma(14;9.4e-05)|Colorectal(10;0.000728)|Lung(22;0.00153)|LUSC - Lung squamous cell carcinoma(45;0.00741)|COAD - Colon adenocarcinoma(11;0.0171)			GAAGTGATGTCTTGAGGGCAG	0.403													24	60					0	0	0.006320	0	0
IKBKB	3551	broad.mit.edu	37	8	42162742	42162742	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:42162742C>T	uc003xow.1	+	6	603	c.426C>T	c.(424-426)ATC>ATT	p.I142I	IKBKB_uc003xov.2_Silent_p.I142I|IKBKB_uc010lxh.1_Silent_p.I37I|IKBKB_uc011lco.1_RNA|IKBKB_uc010lxj.1_Intron|IKBKB_uc003xox.1_5'UTR|IKBKB_uc011lcp.1_RNA|IKBKB_uc011lcq.1_Silent_p.I140I|IKBKB_uc010lxi.1_RNA|IKBKB_uc011lcr.1_Silent_p.I83I	NM_001556	NP_001547	O14920	IKKB_HUMAN	inhibitor of nuclear factor kappa B kinase beta	142	Protein kinase.				anti-apoptosis|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of transcription, DNA-dependent|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	CD40 receptor complex|cytosol|internal side of plasma membrane|membrane raft	ATP binding|identical protein binding|IkappaB kinase activity			breast(3)|ovary(2)|lung(1)|skin(1)	7	all_cancers(6;1.42e-24)|all_epithelial(6;1.02e-25)|all_lung(13;6.21e-12)|Lung NSC(13;1.04e-10)|Ovarian(28;0.00769)|Prostate(17;0.0119)|Colorectal(14;0.0468)|Lung SC(25;0.211)	all_lung(54;0.000434)|Lung NSC(58;0.00161)|Hepatocellular(245;0.0524)|Renal(179;0.0822)|Esophageal squamous(32;0.0954)	BRCA - Breast invasive adenocarcinoma(8;1.37e-10)|Colorectal(10;0.00102)|OV - Ovarian serous cystadenocarcinoma(14;0.00168)|Lung(22;0.00467)|LUSC - Lung squamous cell carcinoma(45;0.024)|COAD - Colon adenocarcinoma(11;0.0264)		Arsenic trioxide(DB01169)|Auranofin(DB00995)	ACAGAATCATCCATCGGGATC	0.498													11	27					0	0	0.013537	0	0
CHRNB3	1142	broad.mit.edu	37	8	42587688	42587688	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:42587688G>A	uc003xpi.1	+	5	1366	c.1238G>A	c.(1237-1239)AGC>AAC	p.S413N		NM_000749	NP_000740	Q05901	ACHB3_HUMAN	cholinergic receptor, nicotinic, beta	413	Cytoplasmic (Potential).				synaptic transmission, cholinergic	cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	nicotinic acetylcholine-activated cation-selective channel activity|receptor activity			ovary(1)	1	all_lung(13;5.7e-12)|Lung NSC(13;1.6e-10)|Ovarian(28;0.00579)|Prostate(17;0.0119)|Lung SC(25;0.184)	all_lung(54;0.00026)|Lung NSC(58;0.000992)|Hepatocellular(245;0.0524)|Renal(179;0.0822)|Esophageal squamous(32;0.0954)	Lung(22;0.0199)|LUSC - Lung squamous cell carcinoma(45;0.0869)			CATTTTATCAGCCAGGTGAGT	0.348													5	29					0	0	0.001984	0	0
SGK196	84197	broad.mit.edu	37	8	42977352	42977352	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:42977352C>T	uc003xpw.2	+	5	644	c.385C>T	c.(385-387)CTC>TTC	p.L129F		NM_032237	NP_115613	Q9H5K3	SG196_HUMAN	protein kinase-like protein SgK196	129	Protein kinase.					integral to membrane	ATP binding|protein kinase activity				0						GCTGAAATCTCTCCAAGGCAC	0.473													22	61					0	0	0.003954	0	0
PRKDC	5591	broad.mit.edu	37	8	48790352	48790352	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:48790352G>A	uc003xqi.2	-	41	5353	c.5296C>T	c.(5296-5298)CTT>TTT	p.L1766F	PRKDC_uc003xqj.2_Missense_Mutation_p.L1766F|PRKDC_uc011ldh.1_Intron	NM_006904	NP_008835	P78527	PRKDC_HUMAN	protein kinase, DNA-activated, catalytic	1766					cellular response to insulin stimulus|double-strand break repair via nonhomologous end joining|peptidyl-serine phosphorylation|positive regulation of transcription from RNA polymerase II promoter	DNA-dependent protein kinase-DNA ligase 4 complex|transcription factor complex	ATP binding|DNA binding|DNA-dependent protein kinase activity|transcription factor binding			lung(12)|central_nervous_system(9)|ovary(6)|skin(4)|large_intestine(3)	34		all_cancers(86;0.0336)|all_epithelial(80;0.00111)|Lung NSC(129;0.00363)|all_lung(136;0.00391)				TCCCGACAAAGAACTTCTGTC	0.388								NHEJ					24	72					0	0	0.003330	0	0
SNTG1	54212	broad.mit.edu	37	8	51569490	51569490	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:51569490G>A	uc010lxy.1	+	15	1242	c.871G>A	c.(871-873)GAA>AAA	p.E291K	SNTG1_uc003xqs.1_Missense_Mutation_p.E291K|SNTG1_uc010lxz.1_Missense_Mutation_p.E291K|SNTG1_uc011ldl.1_RNA	NM_018967	NP_061840	Q9NSN8	SNTG1_HUMAN	syntrophin, gamma 1	291	PH.				cell communication	cytoplasm|cytoskeleton|nucleus|ruffle membrane|syntrophin complex	actin binding|protein C-terminus binding			ovary(5)	5		all_cancers(86;0.00754)|all_epithelial(80;9.76e-05)|Lung NSC(129;0.000865)|all_lung(136;0.00249)|Colorectal(162;0.22)				GGGCTGGTGTGAAGCCCGGGA	0.453													13	71					0	0	0.004990	0	0
PXDNL	137902	broad.mit.edu	37	8	52321410	52321410	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:52321410G>A	uc003xqu.3	-	17	2875	c.2774C>T	c.(2773-2775)CCT>CTT	p.P925L	PXDNL_uc003xqt.3_RNA	NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	925					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				GGGAGGCCAAGGAAAGCCTGT	0.632													3	22					0	0	0.004672	0	0
PXDNL	137902	broad.mit.edu	37	8	52321692	52321692	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:52321692G>A	uc003xqu.3	-	17	2593	c.2492C>T	c.(2491-2493)CCG>CTG	p.P831L	PXDNL_uc003xqt.3_RNA	NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	831					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				GGAGCTGCACGGCCGCCCATC	0.667													3	17					0	0	0.004672	0	0
ST18	9705	broad.mit.edu	37	8	53073993	53073993	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:53073993G>A	uc003xqz.2	-	9	1692	c.1536C>T	c.(1534-1536)TTC>TTT	p.F512F	ST18_uc011ldq.1_Silent_p.F159F|ST18_uc011ldr.1_Silent_p.F477F|ST18_uc011lds.1_Silent_p.F417F|ST18_uc003xra.2_Silent_p.F512F|ST18_uc003xrb.2_Silent_p.F512F	NM_014682	NP_055497	O60284	ST18_HUMAN	suppression of tumorigenicity 18	512						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|skin(1)	5		Lung NSC(129;0.131)|all_epithelial(80;0.217)|all_lung(136;0.229)				GGCGTTTACCGAAAACTTGGG	0.438													11	60					0	0	0.010729	0	0
ST18	9705	broad.mit.edu	37	8	53084550	53084550	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:53084550C>T	uc003xqz.2	-	5	1027	c.871G>A	c.(871-873)GAA>AAA	p.E291K	ST18_uc011ldq.1_5'UTR|ST18_uc011ldr.1_Missense_Mutation_p.E256K|ST18_uc011lds.1_Missense_Mutation_p.E196K|ST18_uc003xra.2_Missense_Mutation_p.E291K|ST18_uc003xrb.2_Missense_Mutation_p.E291K	NM_014682	NP_055497	O60284	ST18_HUMAN	suppression of tumorigenicity 18	291						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|skin(1)	5		Lung NSC(129;0.131)|all_epithelial(80;0.217)|all_lung(136;0.229)				CTACCCTCTTCCGTCATTACT	0.537													11	46					0	0	0.008291	0	0
ST18	9705	broad.mit.edu	37	8	53092862	53092862	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:53092862C>T	uc003xqz.2	-	4	253	c.97G>A	c.(97-99)GAT>AAT	p.D33N	ST18_uc011ldq.1_5'UTR|ST18_uc011ldr.1_5'UTR|ST18_uc011lds.1_5'UTR|ST18_uc003xra.2_Missense_Mutation_p.D33N|ST18_uc003xrb.2_Missense_Mutation_p.D33N|ST18_uc010lyb.2_RNA	NM_014682	NP_055497	O60284	ST18_HUMAN	suppression of tumorigenicity 18	33						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|skin(1)	5		Lung NSC(129;0.131)|all_epithelial(80;0.217)|all_lung(136;0.229)				ATGGAGCAATCATAGGCAACA	0.418													22	87					0	0	0.003954	0	0
RB1CC1	9821	broad.mit.edu	37	8	53586631	53586631	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:53586631G>A	uc003xre.3	-	7	1334	c.776C>T	c.(775-777)CCC>CTC	p.P259L	RB1CC1_uc003xrf.3_Missense_Mutation_p.P259L	NM_014781	NP_055596	Q8TDY2	RBCC1_HUMAN	Rb1-inducible coiled coil protein 1 isoform 1	259					autophagy|cell cycle|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nucleus|pre-autophagosomal structure|ULK1-ATG13-FIP200 complex	protein binding			ovary(8)|upper_aerodigestive_tract(1)|large_intestine(1)|skin(1)	11		all_cancers(86;0.137)|all_epithelial(80;0.00494)|Lung NSC(129;0.011)|all_lung(136;0.023)				CACTGACTTGGGAAATGAGGT	0.418													31	130					0	0	0.010818	0	0
ATP6V1H	51606	broad.mit.edu	37	8	54714393	54714393	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:54714393G>A	uc003xrl.2	-	8	795	c.643C>T	c.(643-645)CGC>TGC	p.R215C	ATP6V1H_uc003xrk.2_Missense_Mutation_p.R175C|ATP6V1H_uc003xrm.2_Missense_Mutation_p.R215C|ATP6V1H_uc003xrn.2_Missense_Mutation_p.R197C|ATP6V1H_uc011ldv.1_Missense_Mutation_p.R135C|ATP6V1H_uc010lyd.2_Missense_Mutation_p.R151C	NM_213620	NP_998785	Q9UI12	VATH_HUMAN	ATPase, H+ transporting, lysosomal 50/57kDa, V1	215					ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|endocytosis|insulin receptor signaling pathway|interspecies interaction between organisms|regulation of defense response to virus by virus|transferrin transport|vacuolar acidification|viral reproduction	cytosol|plasma membrane|vacuolar proton-transporting V-type ATPase, V1 domain	enzyme regulator activity|protein binding|proton-transporting ATPase activity, rotational mechanism				0		all_epithelial(80;0.0487)|Lung NSC(129;0.109)|all_lung(136;0.181)	OV - Ovarian serous cystadenocarcinoma(7;2.79e-06)|Epithelial(17;0.000629)|all cancers(17;0.00359)			CAAGCAAAGCGGTACTCATTG	0.448													19	19					0	0	0.012319	0	0
SOX17	64321	broad.mit.edu	37	8	55370819	55370819	+	Missense_Mutation	SNP	G	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:55370819G>C	uc003xsb.3	+	1	325	c.121G>C	c.(121-123)GAC>CAC	p.D41H		NM_022454	NP_071899	Q9H6I2	SOX17_HUMAN	SRY-box 17	41					angiogenesis|cardiac cell fate determination|endocardial cell differentiation|endocardium formation|endoderm formation|heart formation|heart looping|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cell growth|outflow tract morphogenesis|positive regulation of transcription, DNA-dependent|protein destabilization|protein stabilization|regulation of embryonic development|renal system development|vasculogenesis|Wnt receptor signaling pathway	transcription factor complex	beta-catenin binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription factor binding|transcription regulatory region DNA binding			lung(1)	1		Lung NSC(129;0.109)|all_epithelial(80;0.176)|all_lung(136;0.181)	OV - Ovarian serous cystadenocarcinoma(7;1.9e-07)|Epithelial(17;1.7e-05)|all cancers(17;0.000159)			CCCCATCGGGGACATGAAGGT	0.741													2	8					0	0	0.004672	0	0
RP1	6101	broad.mit.edu	37	8	55539665	55539665	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:55539665G>A	uc003xsd.1	+	4	3371	c.3223G>A	c.(3223-3225)GAA>AAA	p.E1075K	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	1075					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			AGATCCTATAGAAGAGGAAAC	0.403													16	32					0	0	0.003163	0	0
RP1	6101	broad.mit.edu	37	8	55540720	55540720	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:55540720G>A	uc003xsd.1	+	4	4426	c.4278G>A	c.(4276-4278)AGG>AGA	p.R1426R	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	1426					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			GTTCACTAAGGAAGTTTCAGG	0.368													9	18					0	0	0.008291	0	0
RP1	6101	broad.mit.edu	37	8	55541954	55541954	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:55541954C>T	uc003xsd.1	+	4	5660	c.5512C>T	c.(5512-5514)CGC>TGC	p.R1838C	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	1838					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			GCTGGATGTTCGCAATGAAAC	0.423													7	14					0	0	0.001984	0	0
XKR4	114786	broad.mit.edu	37	8	56435906	56435906	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:56435906G>A	uc003xsf.2	+	3	1105	c.1073G>A	c.(1072-1074)CGG>CAG	p.R358Q		NM_052898	NP_443130	Q5GH76	XKR4_HUMAN	XK, Kell blood group complex subunit-related	358						integral to membrane				pancreas(2)	2			Epithelial(17;0.000117)|all cancers(17;0.000836)			AAGGCCCTCCGGGACTCTCGA	0.577													6	28					0	0	0.001168	0	0
TMEM68	137695	broad.mit.edu	37	8	56668905	56668905	+	Nonsense_Mutation	SNP	C	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:56668905C>A	uc003xsg.1	-	2	460	c.391G>T	c.(391-393)GGA>TGA	p.G131*	TMEM68_uc003xsh.1_Nonsense_Mutation_p.G131*	NM_152417	NP_689630	Q96MH6	TMM68_HUMAN	transmembrane protein 68	131	Helical; (Potential).					integral to membrane	acyltransferase activity			skin(1)	1			Epithelial(17;0.000361)|all cancers(17;0.00326)			GGAATAGCTCCATGATAAAAA	0.308													6	49					5.9392e-07	6.36937e-07	0.001168	1	0
LYN	4067	broad.mit.edu	37	8	56863069	56863069	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:56863069C>T	uc003xsk.3	+	5	618	c.336C>T	c.(334-336)TTC>TTT	p.F112F	LYN_uc003xsl.3_Silent_p.F91F	NM_002350	NP_002341	P07948	LYN_HUMAN	Yamaguchi sarcoma viral (v-yes-1) oncogene	112	SH3.				erythrocyte differentiation|interspecies interaction between organisms|leukocyte migration|platelet activation|positive regulation of cellular component movement|positive regulation of stress-activated protein kinase signaling cascade|positive regulation of tyrosine phosphorylation of STAT protein|response to DNA damage stimulus|T cell costimulation	cytosol|Golgi apparatus|membrane raft|nucleus|perinuclear region of cytoplasm	ATP binding|ion channel binding|non-membrane spanning protein tyrosine kinase activity|receptor signaling protein tyrosine kinase activity			ovary(1)|breast(1)|central_nervous_system(1)	3		all_lung(136;0.0555)|Lung NSC(129;0.0726)|all_epithelial(80;0.0772)	Epithelial(17;0.000834)|all cancers(17;0.00598)			AAGAAGGCTTCATCCCCAGCA	0.373													60	95					0	0	0.014410	0	0
LYN	4067	broad.mit.edu	37	8	56912099	56912099	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:56912099C>T	uc003xsk.3	+	12	1609	c.1327C>T	c.(1327-1329)CCC>TCC	p.P443S	LYN_uc003xsl.3_Missense_Mutation_p.P422S	NM_002350	NP_002341	P07948	LYN_HUMAN	Yamaguchi sarcoma viral (v-yes-1) oncogene	443	Protein kinase.				erythrocyte differentiation|interspecies interaction between organisms|leukocyte migration|platelet activation|positive regulation of cellular component movement|positive regulation of stress-activated protein kinase signaling cascade|positive regulation of tyrosine phosphorylation of STAT protein|response to DNA damage stimulus|T cell costimulation	cytosol|Golgi apparatus|membrane raft|nucleus|perinuclear region of cytoplasm	ATP binding|ion channel binding|non-membrane spanning protein tyrosine kinase activity|receptor signaling protein tyrosine kinase activity			ovary(1)|breast(1)|central_nervous_system(1)	3		all_lung(136;0.0555)|Lung NSC(129;0.0726)|all_epithelial(80;0.0772)	Epithelial(17;0.000834)|all cancers(17;0.00598)			TGGGAAAATTCCCTACCCAGG	0.373													9	49					0	0	0.013537	0	0
PLAG1	5324	broad.mit.edu	37	8	57079555	57079555	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:57079555G>A	uc003xsq.3	-	3	1201	c.750C>T	c.(748-750)TTC>TTT	p.F250F	PLAG1_uc003xsr.3_Silent_p.F250F|PLAG1_uc010lyi.2_Silent_p.F250F|PLAG1_uc010lyj.2_Silent_p.F168F	NM_001114635	NP_001108107	Q6DJT9	PLAG1_HUMAN	pleiomorphic adenoma gene 1 isoform b	250	Activates transcription; Inhibition of nuclear import due to lack of NLS and KPNA2 interaction.|Repression domain; contains 3 sumoylation motifs and massively decrease transcription activity.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding		CTNNB1/PLAG1(60)|FGFR1_ENST00000447712/PLAG1(28)|CHCHD7/PLAG1(12)|LIFR_ENST00000263409/PLAG1(10)|HAS2/PLAG1(10)|COL1A2/PLAG1(3)|TCEA1_ENST00000521604/PLAG1(3)	salivary_gland(113)|soft_tissue(13)|lung(1)|central_nervous_system(1)|breast(1)	129		all_lung(136;0.0548)|Lung NSC(129;0.0718)|all_epithelial(80;0.125)	Epithelial(17;0.00179)|all cancers(17;0.0125)			ATGGGTCAAGGAAATCCACTG	0.443			T	TCEA1|LIFR|CTNNB1|CHCHD7	salivary adenoma								45	105					0	0	0.014410	0	0
SDR16C5	195814	broad.mit.edu	37	8	57228816	57228816	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:57228816G>A	uc003xsy.1	-	2	729	c.91C>T	c.(91-93)CTC>TTC	p.L31F	SDR16C5_uc010lyk.1_Missense_Mutation_p.L31F|SDR16C5_uc010lyl.1_Missense_Mutation_p.L31F	NM_138969	NP_620419	Q8N3Y7	RDHE2_HUMAN	epidermal retinal dehydrogenase 2	31	Helical; (Potential).				detection of light stimulus involved in visual perception|keratinocyte proliferation|retinal metabolic process|retinol metabolic process	endoplasmic reticulum membrane|integral to membrane|integral to membrane of membrane fraction	binding|retinol dehydrogenase activity			ovary(1)|central_nervous_system(1)|skin(1)	3						GGCTTTGGGAGTAAGGCAAAA	0.468													12	31					0	0	0.013537	0	0
PENK	5179	broad.mit.edu	37	8	57353905	57353905	+	Missense_Mutation	SNP	C	T	T	rs149967411		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:57353905C>T	uc003xsz.2	-	2	811	c.730G>A	c.(730-732)GAC>AAC	p.D244N	PENK_uc003xta.3_Missense_Mutation_p.D244N	NM_006211	NP_006202	P01210	PENK_HUMAN	proenkephalin	244					neuropeptide signaling pathway	extracellular region	neuropeptide hormone activity|opioid peptide activity			ovary(2)|central_nervous_system(1)|skin(1)	4		all_lung(136;0.229)	Epithelial(17;0.000873)|all cancers(17;0.0069)			CCTTCTTCGTCGGAGGGCAGA	0.493													12	82					0	0	0.010729	0	0
CYP7A1	1581	broad.mit.edu	37	8	59404243	59404243	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:59404243G>A	uc003xtm.3	-	6	1369	c.1306C>T	c.(1306-1308)CCC>TCC	p.P436S		NM_000780	NP_000771	P22680	CP7A1_HUMAN	cytochrome P450, family 7, subfamily A,	436					bile acid biosynthetic process|cellular lipid metabolic process|cellular response to cholesterol|cellular response to glucose stimulus|cholesterol catabolic process|cholesterol homeostasis|regulation of bile acid biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	cholesterol 7-alpha-monooxygenase activity|electron carrier activity|heme binding			ovary(1)	1		all_lung(136;0.0271)|Lung NSC(129;0.0351)|all_epithelial(80;0.0554)				GATCCAAAGGGCATGTAGTAA	0.353									Neonatal_Giant_Cell_Hepatitis				11	102					0	0	0.010729	0	0
CHD7	55636	broad.mit.edu	37	8	61769330	61769331	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:61769330_61769331CC>AT	uc003xue.2	+	34	7968_7969	c.7491_7492CC>AT	c.(7489-7494)CTCCTT>CTATTT	p.L2498F		NM_017780	NP_060250	Q9P2D1	CHD7_HUMAN	chromodomain helicase DNA binding protein 7	2498					central nervous system development|chromatin modification|cognition|cranial nerve development|face development|heart morphogenesis|in utero embryonic development|inner ear morphogenesis|nose development|palate development|regulation of growth hormone secretion|regulation of transcription, DNA-dependent|retina development in camera-type eye|skeletal system development|T cell differentiation|transcription, DNA-dependent	nucleus	ATP binding|chromatin binding|DNA binding|helicase activity			ovary(4)|large_intestine(1)|central_nervous_system(1)|lung(1)|breast(1)|pancreas(1)	9		all_cancers(86;0.2)|all_lung(136;0.0402)|Lung NSC(129;0.0459)|all_epithelial(80;0.0477)	BRCA - Breast invasive adenocarcinoma(89;0.143)			CAAGGCATCTCCTTAATGGCTC	0.505													36	78					0	0	0.004672	0	0
GGH	8836	broad.mit.edu	37	8	63927919	63927919	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:63927919G>A	uc003xuw.2	-	9	1212	c.929C>T	c.(928-930)TCA>TTA	p.S310L		NM_003878	NP_003869	Q92820	GGH_HUMAN	gamma-glutamyl hydrolase precursor	310	Gamma-glutamyl hydrolase.				glutamine metabolic process	extracellular space|lysosome|melanosome	gamma-glutamyl-peptidase activity				0	Breast(64;0.0716)	all_cancers(86;0.189)|Lung NSC(129;0.0324)|all_lung(136;0.0593)|all_epithelial(80;0.131)			Folic Acid(DB00158)|L-Glutamic Acid(DB00142)	TTGCTGAAATGAAGAAATATT	0.303													4	23					0	0	0.000602	0	0
CYP7B1	9420	broad.mit.edu	37	8	65517309	65517309	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:65517309C>T	uc003xvj.2	-	5	1367	c.1163G>A	c.(1162-1164)CGA>CAA	p.R388Q		NM_004820	NP_004811	O75881	CP7B1_HUMAN	cytochrome P450, family 7, subfamily B,	388					bile acid biosynthetic process|cell death|cholesterol metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	25-hydroxycholesterol 7alpha-hydroxylase activity|electron carrier activity|heme binding|oxysterol 7-alpha-hydroxylase activity			ovary(3)	3		all_cancers(86;0.217)|Lung NSC(129;0.0521)|all_lung(136;0.0906)|all_epithelial(80;0.215)				GTCTCCCTTTCGCACACAGTA	0.453													25	51					0	0	0.007291	0	0
TRIM55	84675	broad.mit.edu	37	8	67066357	67066357	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:67066357G>A	uc003xvv.2	+	9	1538	c.1312G>A	c.(1312-1314)GAT>AAT	p.D438N	TRIM55_uc003xvu.2_Missense_Mutation_p.D438N|TRIM55_uc003xvw.2_Intron|TRIM55_uc003xvx.2_Intron	NM_184085	NP_908973	Q9BYV6	TRI55_HUMAN	tripartite motif-containing 55 isoform 1	438						cytoplasm|microtubule|nucleus	signal transducer activity|zinc ion binding			skin(3)|ovary(1)|central_nervous_system(1)	5		Lung NSC(129;0.138)|all_lung(136;0.221)	Epithelial(68;0.0136)|all cancers(69;0.0582)|BRCA - Breast invasive adenocarcinoma(89;0.0628)|OV - Ovarian serous cystadenocarcinoma(28;0.0904)			AGAAACTGCGGATCCCTTGTT	0.537													6	48					0	0	0.001984	0	0
VCPIP1	80124	broad.mit.edu	37	8	67547298	67547298	+	Missense_Mutation	SNP	G	A	A	rs142699780	by1000genomes	TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:67547298G>A	uc003xwn.2	-	3	3366	c.3107C>T	c.(3106-3108)TCT>TTT	p.S1036F		NM_025054	NP_079330	Q96JH7	VCIP1_HUMAN	valosin containing protein (p97)/p47 complex	1036					protein ubiquitination	endoplasmic reticulum|Golgi stack	ubiquitin-specific protease activity			lung(2)|ovary(2)|central_nervous_system(1)|breast(1)|skin(1)|kidney(1)	8		Lung NSC(129;0.142)|all_lung(136;0.227)	Epithelial(68;0.000771)|OV - Ovarian serous cystadenocarcinoma(28;0.00248)|all cancers(69;0.00296)|BRCA - Breast invasive adenocarcinoma(89;0.149)			TGGGTTACCAGATGCAGTTCC	0.403													39	50					0	0	0.004878	0	0
CPA6	57094	broad.mit.edu	37	8	68658352	68658352	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:68658352C>T	uc003xxq.3	-	1	269	c.13G>A	c.(13-15)GGG>AGG	p.G5R	CPA6_uc003xxr.3_5'UTR|CPA6_uc003xxs.2_Missense_Mutation_p.G5R	NM_020361	NP_065094	Q8N4T0	CBPA6_HUMAN	carboxypeptidase A6 isoform 1 precursor	5					proteolysis	proteinaceous extracellular matrix	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2			Epithelial(68;0.04)|OV - Ovarian serous cystadenocarcinoma(28;0.0593)|all cancers(69;0.136)			CTGCGCTTCCCGAGACACTTC	0.542													7	31					0	0	0.003080	0	0
C8orf34	116328	broad.mit.edu	37	8	69351845	69351846	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:69351845_69351846GG>AA	uc010lyz.2	+	2	230_231	c.181_182GG>AA	c.(181-183)GGA>AAA	p.G61K	C8orf34_uc010lyx.1_Missense_Mutation_p.G61K|C8orf34_uc010lyy.1_Missense_Mutation_p.G61K|C8orf34_uc003xyb.2_Missense_Mutation_p.G36K	NM_052958	NP_443190	Q49A92	CH034_HUMAN	hypothetical protein LOC116328	61					signal transduction		cAMP-dependent protein kinase regulator activity			large_intestine(1)	1			Epithelial(68;0.0117)|OV - Ovarian serous cystadenocarcinoma(28;0.0227)|all cancers(69;0.0502)			AACTTTGTCTGGATCTGCAGCT	0.376													19	20					0	0	0.004672	0	0
C8orf34	116328	broad.mit.edu	37	8	69381034	69381034	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:69381034G>A	uc010lyz.2	+	4	506	c.457G>A	c.(457-459)GCC>ACC	p.A153T	C8orf34_uc010lyy.1_Missense_Mutation_p.A153T|C8orf34_uc003xyb.2_Missense_Mutation_p.A128T	NM_052958	NP_443190	Q49A92	CH034_HUMAN	hypothetical protein LOC116328	153					signal transduction		cAMP-dependent protein kinase regulator activity			large_intestine(1)	1			Epithelial(68;0.0117)|OV - Ovarian serous cystadenocarcinoma(28;0.0227)|all cancers(69;0.0502)			GCTGGGGAAAGCCCTTGAGAA	0.403													10	19					0	0	0.008291	0	0
SULF1	23213	broad.mit.edu	37	8	70501326	70501327	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:70501326_70501327GG>AT	uc010lza.1	+	8	1401_1402	c.684_685GG>AT	c.(682-687)GAGGAC>GAATAC	p.D229Y	SULF1_uc003xyd.2_Missense_Mutation_p.D229Y|SULF1_uc003xye.2_Missense_Mutation_p.D229Y|SULF1_uc003xyf.2_Missense_Mutation_p.D229Y|SULF1_uc003xyg.2_Missense_Mutation_p.D229Y	NM_015170	NP_055985	Q8IWU6	SULF1_HUMAN	sulfatase 1 precursor	229					apoptosis|bone development|heparan sulfate proteoglycan metabolic process|kidney development|negative regulation of fibroblast growth factor receptor signaling pathway	cell surface|endoplasmic reticulum|extracellular space|Golgi stack	arylsulfatase activity|calcium ion binding			central_nervous_system(3)|ovary(2)|pancreas(1)|skin(1)	7	Breast(64;0.0654)		Epithelial(68;0.0124)|OV - Ovarian serous cystadenocarcinoma(28;0.0265)|all cancers(69;0.0534)			ACGGCCCCGAGGACTCAGCCCC	0.49													8	22					0	0	0.004672	0	0
SULF1	23213	broad.mit.edu	37	8	70517057	70517057	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:70517057G>A	uc010lza.1	+	13	1984	c.1267G>A	c.(1267-1269)GAA>AAA	p.E423K	SULF1_uc003xyd.2_Missense_Mutation_p.E423K|SULF1_uc003xye.2_Missense_Mutation_p.E423K|SULF1_uc003xyf.2_Missense_Mutation_p.E423K|SULF1_uc003xyg.2_Missense_Mutation_p.E423K|SULF1_uc003xyh.1_RNA	NM_015170	NP_055985	Q8IWU6	SULF1_HUMAN	sulfatase 1 precursor	423					apoptosis|bone development|heparan sulfate proteoglycan metabolic process|kidney development|negative regulation of fibroblast growth factor receptor signaling pathway	cell surface|endoplasmic reticulum|extracellular space|Golgi stack	arylsulfatase activity|calcium ion binding			central_nervous_system(3)|ovary(2)|pancreas(1)|skin(1)	7	Breast(64;0.0654)		Epithelial(68;0.0124)|OV - Ovarian serous cystadenocarcinoma(28;0.0265)|all cancers(69;0.0534)			ACGTAAGAAGGAAGAATCCAG	0.433													18	38					0	0	0.007413	0	0
NCOA2	10499	broad.mit.edu	37	8	71069324	71069324	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:71069324G>A	uc003xyn.1	-	11	1438	c.1276C>T	c.(1276-1278)CCC>TCC	p.P426S		NM_006540	NP_006531	Q15596	NCOA2_HUMAN	nuclear receptor coactivator 2	426					cellular lipid metabolic process|transcription, DNA-dependent	nucleoplasm	histone acetyltransferase activity|ligand-dependent nuclear receptor binding|nuclear hormone receptor binding|signal transducer activity		PAX3/NCOA2(4)	lung(6)|soft_tissue(4)|breast(2)|skin(2)|ovary(1)|pancreas(1)	16	Breast(64;0.201)		Epithelial(68;0.0147)|OV - Ovarian serous cystadenocarcinoma(28;0.0455)|all cancers(69;0.0606)			CCATTTATGGGAAAATTTATA	0.517			T	RUNXBP2	AML								7	27					0	0	0.003080	0	0
Unknown	0	broad.mit.edu	37	8	73150368	73150368	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:73150368G>A	uc010lzg.2	-	7	876	c.340C>T	c.(340-342)CAT>TAT	p.H114Y						Homo sapiens cDNA, FLJ99767.																		ACAGCCAGATGGAGAGGGCTG	0.418													4	18					0	0	0.000602	0	0
KCNB2	9312	broad.mit.edu	37	8	73849256	73849256	+	Missense_Mutation	SNP	C	T	T	rs144823279		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:73849256C>T	uc003xzb.2	+	3	2254	c.1666C>T	c.(1666-1668)CCA>TCA	p.P556S		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	556	Cytoplasmic (Potential).				regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			skin(3)|large_intestine(1)|pancreas(1)|ovary(1)|central_nervous_system(1)	7	Breast(64;0.137)		Epithelial(68;0.105)			TCATTCTCACCCAAACCCAGA	0.512													15	44					0	0	0.004990	0	0
LY96	23643	broad.mit.edu	37	8	74922261	74922261	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:74922261C>T	uc003yad.2	+	3	319	c.228C>T	c.(226-228)TTC>TTT	p.F76F		NM_015364	NP_056179	Q9Y6Y9	LY96_HUMAN	MD-2 protein precursor	76					cellular defense response|detection of lipopolysaccharide|I-kappaB kinase/NF-kappaB cascade|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	extracellular space|lipopolysaccharide receptor complex|plasma membrane	coreceptor activity|lipopolysaccharide receptor activity|protein binding				0	Breast(64;0.0311)		Epithelial(68;0.0208)|BRCA - Breast invasive adenocarcinoma(89;0.0499)|all cancers(69;0.0619)			AATTATATTTCAATCTCTATA	0.308													13	40					0	0	0.013537	0	0
HNF4G	3174	broad.mit.edu	37	8	76471140	76471140	+	Silent	SNP	A	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:76471140A>C	uc003yaq.2	+	9	1120	c.850A>C	c.(850-852)AGG>CGG	p.R284R	HNF4G_uc003yar.2_Silent_p.R321R	NM_004133	NP_004124	Q14541	HNF4G_HUMAN	hepatocyte nuclear factor 4, gamma	284					endocrine pancreas development|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)	1	Breast(64;0.0448)		BRCA - Breast invasive adenocarcinoma(89;0.161)			CTCCCGGGGGAGGTTTGGAGA	0.448													12	73					0	0	0.001855	0	0
ZFHX4	79776	broad.mit.edu	37	8	77764749	77764749	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:77764749G>A	uc003yav.2	+	10	5844	c.5457G>A	c.(5455-5457)AAG>AAA	p.K1819K	ZFHX4_uc003yau.1_Silent_p.K1864K|ZFHX4_uc003yaw.1_Silent_p.K1819K	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	1819						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			TTTCTGAAAAGCCAGAAAAAC	0.398										HNSCC(33;0.089)			3	7					0	0	0.004672	0	0
ZFHX4	79776	broad.mit.edu	37	8	77767262	77767262	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:77767262G>A	uc003yav.2	+	10	8357	c.7970G>A	c.(7969-7971)GGA>GAA	p.G2657E	ZFHX4_uc003yau.1_Missense_Mutation_p.G2702E|ZFHX4_uc003yaw.1_Missense_Mutation_p.G2657E	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	2657						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			TGGAATGAAGGAAAGCAGGCA	0.488										HNSCC(33;0.089)			10	25					0	0	0.006214	0	0
ZFHX4	79776	broad.mit.edu	37	8	77768521	77768521	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:77768521C>T	uc003yav.2	+	10	9616	c.9229C>T	c.(9229-9231)CCA>TCA	p.P3077S	ZFHX4_uc003yau.1_Missense_Mutation_p.P3122S|ZFHX4_uc003yaw.1_Missense_Mutation_p.P3077S	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	3077	Pro-rich.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			GCCGGGATTTCCACAAAATTC	0.512										HNSCC(33;0.089)			6	21					0	0	0.003080	0	0
PEX2	5828	broad.mit.edu	37	8	77895647	77895647	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:77895647G>A	uc003yax.2	-	4	1226	c.768C>T	c.(766-768)ACC>ACT	p.T256T	PEX2_uc003yay.2_Silent_p.T256T|PEX2_uc003yaz.2_Silent_p.T256T	NM_000318	NP_000309	P28328	PEX2_HUMAN	peroxin 2	256	RING-type.				peroxisome organization	integral to peroxisomal membrane	protein binding|zinc ion binding			ovary(1)	1						CACATCCTATGGTGTGAGGCA	0.438													13	63					0	0	0.003163	0	0
PAG1	55824	broad.mit.edu	37	8	81897132	81897132	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:81897132G>A	uc003ybz.2	-	7	1466	c.755C>T	c.(754-756)CCA>CTA	p.P252L		NM_018440	NP_060910	Q9NWQ8	PAG1_HUMAN	phosphoprotein associated with glycosphingolipid	252	Cytoplasmic (Potential).				epidermal growth factor receptor signaling pathway|intracellular signal transduction|T cell receptor signaling pathway	integral to membrane|intracellular|membrane raft|plasma membrane	SH2 domain binding|SH3/SH2 adaptor activity				0	Lung NSC(7;5.76e-06)|all_lung(9;2e-05)		BRCA - Breast invasive adenocarcinoma(6;0.0567)|Epithelial(68;0.0634)|all cancers(69;0.197)			CTCCTCTTCTGGATCACATGA	0.483													39	77					0	0	0.008740	0	0
CA1	759	broad.mit.edu	37	8	86249251	86249251	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:86249251G>A	uc003ydh.2	-	5	477	c.277C>T	c.(277-279)CAG>TAG	p.Q93*	CA13_uc003ydf.1_Intron|CA1_uc010mae.1_Nonsense_Mutation_p.Q93*|CA1_uc003ydi.2_Nonsense_Mutation_p.Q93*	NM_001738	NP_001729	P00915	CAH1_HUMAN	carbonic anhydrase I	93					one-carbon metabolic process	Golgi apparatus	carbonate dehydratase activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2		all_lung(136;4.89e-06)			Acetazolamide(DB00819)|Amlodipine(DB00381)|Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Brinzolamide(DB01194)|Chlorothiazide(DB00880)|Cyclothiazide(DB00606)|Diazoxide(DB01119)|Dichlorphenamide(DB01144)|Ethinamate(DB01031)|Ethoxzolamide(DB00311)|Hydrochlorothiazide(DB00999)|Hydroflumethiazide(DB00774)|Levetiracetam(DB01202)|Methazolamide(DB00703)|Methyclothiazide(DB00232)|Quinethazone(DB01325)|Trichlormethiazide(DB01021)|Verapamil(DB00661)|Zonisamide(DB00909)	AAATGGAACTGAAAGAGCCTG	0.433													25	44					0	0	0.003954	0	0
Unknown	0	broad.mit.edu	37	8	86567344	86567344	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:86567344C>T	uc003ydl.1	-	1	562	c.475G>A	c.(475-477)GAG>AAG	p.E159K		NM_172239	NP_758439			exonuclease GOR																		CGGGTCAGCTCCAGGCCATGC	0.562													12	75					0	0	0.013537	0	0
PSKH2	85481	broad.mit.edu	37	8	87076500	87076500	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:87076500C>T	uc011lfy.1	-	2	546	c.546G>A	c.(544-546)AGG>AGA	p.R182R		NM_033126	NP_149117	Q96QS6	KPSH2_HUMAN	protein serine kinase H2	182	Protein kinase.						ATP binding|protein serine/threonine kinase activity			stomach(2)|lung(2)|ovary(1)	5			STAD - Stomach adenocarcinoma(118;0.129)			GCTTTAGATTCCTATGAGTTA	0.433													14	42					0	0	0.002450	0	0
ATP6V0D2	245972	broad.mit.edu	37	8	87151710	87151710	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:87151710G>A	uc003ydp.1	+	3	396	c.327G>A	c.(325-327)GTG>GTA	p.V109V		NM_152565	NP_689778	Q8N8Y2	VA0D2_HUMAN	ATPase, H+ transporting, lysosomal 38kDa, V0	109					ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	apical plasma membrane|endosome membrane|proton-transporting V-type ATPase, V0 domain|vacuolar proton-transporting V-type ATPase complex	hydrogen ion transmembrane transporter activity|protein binding				0						TAGACAATGTGATTCTGCTGA	0.423													14	49					0	0	0.003163	0	0
SLC7A13	157724	broad.mit.edu	37	8	87241866	87241866	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:87241866C>T	uc003ydq.1	-	1	739	c.641G>A	c.(640-642)GGA>GAA	p.G214E	SLC7A13_uc003ydr.1_Missense_Mutation_p.G214E	NM_138817	NP_620172	Q8TCU3	S7A13_HUMAN	solute carrier family 7, (cationic amino acid	214	Helical; Name=6; (Potential).					integral to membrane	amino acid transmembrane transporter activity			central_nervous_system(1)	1						TGCAAAATATCCTTGGAAGAT	0.363													6	49					0	0	0.003080	0	0
CNBD1	168975	broad.mit.edu	37	8	87917373	87917373	+	Silent	SNP	C	T	T	rs146302968	by1000genomes	TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:87917373C>T	uc003ydy.2	+	3	271	c.223C>T	c.(223-225)CTG>TTG	p.L75L		NM_173538	NP_775809	Q8NA66	CNBD1_HUMAN	cyclic nucleotide binding domain containing 1	75										ovary(3)	3						TAAAGTATTCCTGCACCAAAA	0.368													6	12					0	0	0.003080	0	0
DCAF4L2	138009	broad.mit.edu	37	8	88885275	88885275	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:88885275C>T	uc003ydz.2	-	1	1022	c.925G>A	c.(925-927)GAA>AAA	p.E309K		NM_152418	NP_689631	Q8NA75	DC4L2_HUMAN	WD repeat domain 21C	309										ovary(1)	1						ACATGACCTTCGTACTGTGTT	0.517													12	34					0	0	0.013537	0	0
MMP16	4325	broad.mit.edu	37	8	89058988	89058988	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:89058988C>T	uc003yeb.3	-	9	1680	c.1398G>A	c.(1396-1398)ATG>ATA	p.M466I		NM_005941	NP_005932	P51512	MMP16_HUMAN	matrix metalloproteinase 16 isoform 1	466	Extracellular (Potential).|Hemopexin-like 3.				collagen catabolic process|proteolysis	cell surface|integral to plasma membrane|proteinaceous extracellular matrix	calcium ion binding|enzyme activator activity|metalloendopeptidase activity|zinc ion binding			upper_aerodigestive_tract(2)|ovary(2)|central_nervous_system(1)|urinary_tract(1)|skin(1)|kidney(1)	8						CCATTGTTTTCATTTCTTCAC	0.368													11	69					0	0	0.010729	0	0
SLC26A7	115111	broad.mit.edu	37	8	92364064	92364064	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:92364064C>T	uc003yex.2	+	11	1445	c.1167C>T	c.(1165-1167)TTC>TTT	p.F389F	SLC26A7_uc003yey.2_RNA|SLC26A7_uc003yez.2_Silent_p.F389F|SLC26A7_uc003yfa.2_Silent_p.F389F	NM_052832	NP_439897	Q8TE54	S26A7_HUMAN	solute carrier family 26, member 7 isoform a	389	Helical; (Potential).					basolateral plasma membrane|integral to membrane|recycling endosome membrane	anion:anion antiporter activity|bicarbonate transmembrane transporter activity|chloride channel activity|oxalate transmembrane transporter activity|sulfate transmembrane transporter activity			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(11;0.00802)			CTTGCATTTTCGTCCTTATAG	0.353													29	74					0	0	0.003271	0	0
RBM12B	389677	broad.mit.edu	37	8	94746800	94746800	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:94746800G>A	uc003yfz.2	-	3	2032	c.1839C>T	c.(1837-1839)CAC>CAT	p.H613H		NM_203390	NP_976324	Q8IXT5	RB12B_HUMAN	RNA binding motif protein 12B	613							nucleotide binding|RNA binding				0	Breast(36;4.14e-07)		BRCA - Breast invasive adenocarcinoma(8;0.0168)			CCTCCCTAGGGTGCCTGAAGT	0.642													15	45					0	0	0.004007	0	0
PDP1	54704	broad.mit.edu	37	8	94935465	94935465	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:94935465C>T	uc003yge.2	+	2	1447	c.1178C>T	c.(1177-1179)CCT>CTT	p.P393L	PDP1_uc003ygf.2_Missense_Mutation_p.P418L|PDP1_uc010max.2_Missense_Mutation_p.P418L|PDP1_uc011lgm.1_Missense_Mutation_p.P393L|PDP1_uc011lgn.1_Missense_Mutation_p.P452L	NM_018444	NP_060914	Q9P0J1	PDP1_HUMAN	pyruvate dehyrogenase phosphatase catalytic	393					pyruvate metabolic process|regulation of acetyl-CoA biosynthetic process from pyruvate	mitochondrial matrix|protein serine/threonine phosphatase complex	[pyruvate dehydrogenase (lipoamide)] phosphatase activity			ovary(1)|skin(1)|central_nervous_system(1)|pancreas(1)	4						CACACACCTCCTTATCTCACT	0.443													19	84					0	0	0.008871	0	0
MTDH	92140	broad.mit.edu	37	8	98657030	98657030	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:98657030C>T	uc003yhz.2	+	1	624	c.296C>T	c.(295-297)GCC>GTC	p.A99V		NM_178812	NP_848927	Q86UE4	LYRIC_HUMAN	metadherin	99	Interaction with BCCIP.|Cytoplasmic (Potential).				lipopolysaccharide-mediated signaling pathway|negative regulation of apoptosis|negative regulation of transcription from RNA polymerase II promoter|positive regulation of angiogenesis|positive regulation of autophagy|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of protein kinase B signaling cascade	apical plasma membrane|endoplasmic reticulum membrane|integral to membrane|intercellular canaliculus|nuclear body|nuclear membrane|nucleolus|perinuclear region of cytoplasm|tight junction	NF-kappaB binding|RNA polymerase II transcription factor binding|transcription coactivator activity			liver(1)|central_nervous_system(1)	2	Breast(36;2.56e-06)		OV - Ovarian serous cystadenocarcinoma(57;0.178)			ccggccgcggcccccgACGAC	0.537													3	7					0	0	0.009096	0	0
POP1	10940	broad.mit.edu	37	8	99146817	99146817	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:99146817C>T	uc003yij.3	+	7	1041	c.941C>T	c.(940-942)TCC>TTC	p.S314F	POP1_uc011lgv.1_Missense_Mutation_p.S314F|POP1_uc003yik.2_Missense_Mutation_p.S314F	NM_001145860	NP_001139332	Q99575	POP1_HUMAN	processing of precursor 1	314					tRNA 5'-leader removal|tRNA catabolic process	nucleolar ribonuclease P complex|ribonuclease MRP complex	identical protein binding|ribonuclease MRP activity|ribonuclease P activity			ovary(1)|breast(1)	2	Breast(36;1.78e-06)		OV - Ovarian serous cystadenocarcinoma(57;0.145)			ATCTGGAAGTCCCAGAGGACC	0.507													23	68					0	0	0.003330	0	0
VPS13B	157680	broad.mit.edu	37	8	100520086	100520086	+	Nonsense_Mutation	SNP	C	T	T	rs145741622		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:100520086C>T	uc003yiv.2	+	28	4357	c.4246C>T	c.(4246-4248)CGA>TGA	p.R1416*	VPS13B_uc003yiw.2_Intron|VPS13B_uc003yiu.1_3'UTR|VPS13B_uc003yix.1_Nonsense_Mutation_p.R886*	NM_017890	NP_060360	Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13B isoform 5	1416					protein transport					ovary(7)|skin(4)|lung(3)|central_nervous_system(2)|pancreas(2)|breast(1)|kidney(1)	20	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			CTTGTTGGTTCGACCCATCAG	0.453													22	55					0	0	0.005443	0	0
VPS13B	157680	broad.mit.edu	37	8	100844860	100844860	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:100844860G>A	uc003yiv.2	+	52	9780	c.9669G>A	c.(9667-9669)CGG>CGA	p.R3223R	VPS13B_uc003yiw.2_Silent_p.R3198R	NM_017890	NP_060360	Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13B isoform 5	3223					protein transport					ovary(7)|skin(4)|lung(3)|central_nervous_system(2)|pancreas(2)|breast(1)|kidney(1)	20	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			GGAATTTCCGGGAAAATGGAT	0.463													9	48					0	0	0.006214	0	0
RGS22	26166	broad.mit.edu	37	8	101014554	101014554	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:101014554C>T	uc003yjb.1	-	18	2861	c.2666G>A	c.(2665-2667)CGG>CAG	p.R889Q	RGS22_uc003yja.1_Missense_Mutation_p.R708Q|RGS22_uc003yjc.1_Missense_Mutation_p.R877Q|RGS22_uc011lgz.1_RNA	NM_015668	NP_056483	Q8NE09	RGS22_HUMAN	regulator of G-protein signaling 22	889	RGS 1.				negative regulation of signal transduction	cytoplasm|plasma membrane	GTPase activator activity|signal transducer activity			ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7			Epithelial(11;6.71e-08)|all cancers(13;4.19e-06)|OV - Ovarian serous cystadenocarcinoma(57;0.000469)|STAD - Stomach adenocarcinoma(118;0.169)			AGTTATTCTCCGGAACTGCTC	0.318													7	28					0	0	0.001984	0	0
RGS22	26166	broad.mit.edu	37	8	101016271	101016271	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:101016271C>T	uc003yjb.1	-	17	2705	c.2510G>A	c.(2509-2511)CGA>CAA	p.R837Q	RGS22_uc003yja.1_Missense_Mutation_p.R656Q|RGS22_uc003yjc.1_Missense_Mutation_p.R825Q|RGS22_uc011lgz.1_RNA	NM_015668	NP_056483	Q8NE09	RGS22_HUMAN	regulator of G-protein signaling 22	837					negative regulation of signal transduction	cytoplasm|plasma membrane	GTPase activator activity|signal transducer activity			ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7			Epithelial(11;6.71e-08)|all cancers(13;4.19e-06)|OV - Ovarian serous cystadenocarcinoma(57;0.000469)|STAD - Stomach adenocarcinoma(118;0.169)			ATATTCTGTTCGTTTAGAGAC	0.353													18	33					0	0	0.010504	0	0
RGS22	26166	broad.mit.edu	37	8	101083607	101083607	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:101083607G>A	uc003yjb.1	-	6	779	c.584C>T	c.(583-585)TCA>TTA	p.S195L	RGS22_uc003yja.1_Intron|RGS22_uc003yjc.1_Intron|RGS22_uc011lgz.1_RNA|RGS22_uc010mbo.1_RNA	NM_015668	NP_056483	Q8NE09	RGS22_HUMAN	regulator of G-protein signaling 22	195					negative regulation of signal transduction	cytoplasm|plasma membrane	GTPase activator activity|signal transducer activity			ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7			Epithelial(11;6.71e-08)|all cancers(13;4.19e-06)|OV - Ovarian serous cystadenocarcinoma(57;0.000469)|STAD - Stomach adenocarcinoma(118;0.169)			CTCACCAAGTGATACATAGAA	0.313													12	39					0	0	0.013537	0	0
GRHL2	79977	broad.mit.edu	37	8	102582566	102582566	+	Splice_Site	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:102582566G>A	uc010mbu.2	+	5	1009	c.679_splice	c.e5-1	p.K227_splice	GRHL2_uc011lhi.1_Splice_Site_p.K227_splice	NM_024915	NP_079191	Q6ISB3	GRHL2_HUMAN	transcription factor CP2-like 3							cytoplasm|nucleus	DNA binding			ovary(2)|skin(1)	3	all_cancers(14;4.39e-08)|all_epithelial(15;4.09e-10)|Lung NSC(17;7.11e-06)|all_lung(17;1.44e-05)		Epithelial(11;5.81e-09)|all cancers(13;3.81e-07)|OV - Ovarian serous cystadenocarcinoma(57;0.000213)			ATATTTTGCAGAAATTTCGGA	0.333													22	88					0	0	0.004656	0	0
RIMS2	9699	broad.mit.edu	37	8	104898041	104898041	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:104898041A>G	uc003yls.2	+	2	789	c.548A>G	c.(547-549)GAA>GGA	p.E183G	RIMS2_uc003ylp.2_Missense_Mutation_p.E405G|RIMS2_uc003ylw.2_Missense_Mutation_p.E213G|RIMS2_uc003ylq.2_Missense_Mutation_p.E213G|RIMS2_uc003ylr.2_Missense_Mutation_p.E213G	NM_014677	NP_055492	Q9UQ26	RIMS2_HUMAN	regulating synaptic membrane exocytosis 2	436					intracellular protein transport	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(6)|lung(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	15			OV - Ovarian serous cystadenocarcinoma(57;7.7e-07)|STAD - Stomach adenocarcinoma(118;0.229)			GCTGCCATGGAAAATCAGCGA	0.458										HNSCC(12;0.0054)			14	26					0	0	0.003163	0	0
RIMS2	9699	broad.mit.edu	37	8	105257166	105257166	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:105257166G>A	uc003yls.2	+	24	3652	c.3411G>A	c.(3409-3411)AGG>AGA	p.R1137R	RIMS2_uc003ylp.2_Silent_p.R1119R|RIMS2_uc003ylw.2_Silent_p.R1126R|RIMS2_uc003ylq.2_Silent_p.R933R|RIMS2_uc003ylr.2_Silent_p.R958R	NM_014677	NP_055492	Q9UQ26	RIMS2_HUMAN	regulating synaptic membrane exocytosis 2	1181					intracellular protein transport	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(6)|lung(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	15			OV - Ovarian serous cystadenocarcinoma(57;7.7e-07)|STAD - Stomach adenocarcinoma(118;0.229)			AAAAACTAAGGAGCACTGTCC	0.448										HNSCC(12;0.0054)			40	70					0	0	0.006999	0	0
RIMS2	9699	broad.mit.edu	37	8	105263968	105263968	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:105263968C>T	uc003yls.2	+	28	4265	c.4024C>T	c.(4024-4026)CCA>TCA	p.P1342S	RIMS2_uc003ylp.2_Missense_Mutation_p.P1324S|RIMS2_uc003ylq.2_Missense_Mutation_p.P1138S|RIMS2_uc003ylr.2_Missense_Mutation_p.P1163S	NM_014677	NP_055492	Q9UQ26	RIMS2_HUMAN	regulating synaptic membrane exocytosis 2	1386					intracellular protein transport	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(6)|lung(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	15			OV - Ovarian serous cystadenocarcinoma(57;7.7e-07)|STAD - Stomach adenocarcinoma(118;0.229)			CCTAGTAGATCCAACCTTGGC	0.433										HNSCC(12;0.0054)			39	97					0	0	0.006999	0	0
DPYS	1807	broad.mit.edu	37	8	105405184	105405184	+	Missense_Mutation	SNP	T	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:105405184T>A	uc003yly.3	-	8	1400	c.1271A>T	c.(1270-1272)AAC>ATC	p.N424I	DPYS_uc010mcf.1_5'UTR	NM_001385	NP_001376	Q14117	DPYS_HUMAN	dihydropyrimidinase	424					protein homotetramerization|pyrimidine nucleoside catabolic process|thymine catabolic process|uracil catabolic process	cytosol	dihydropyrimidinase activity|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2			OV - Ovarian serous cystadenocarcinoma(57;1.61e-06)|STAD - Stomach adenocarcinoma(118;0.229)			AATGTTGAAGTTAACAGCCTG	0.413													17	47					0	0	0.004990	0	0
ANGPT1	284	broad.mit.edu	37	8	108306175	108306176	+	Nonsense_Mutation	DNP	CC	AT	AT			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:108306175_108306176CC>AT	uc003ymn.2	-	6	1494_1495	c.1026_1027GG>AT	c.(1024-1029)AAGGAA>AAATAA	p.E343*	ANGPT1_uc011lhv.1_Nonsense_Mutation_p.E143*|ANGPT1_uc003ymo.2_Nonsense_Mutation_p.E342*|ANGPT1_uc003ymp.3_Nonsense_Mutation_p.E142*	NM_001146	NP_001137	Q15389	ANGP1_HUMAN	angiopoietin 1 precursor	343	Fibrinogen C-terminal.				activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|blood coagulation|cell differentiation|heparin biosynthetic process|leukocyte migration|negative regulation of cell adhesion|negative regulation of endothelial cell apoptosis|negative regulation of vascular permeability|positive chemotaxis|positive regulation of blood vessel endothelial cell migration|positive regulation of ERK1 and ERK2 cascade|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of protein ubiquitination|positive regulation of receptor internalization|protein localization at cell surface|regulation of satellite cell proliferation|sprouting angiogenesis|Tie receptor signaling pathway	extracellular space|membrane raft|microvillus|plasma membrane	receptor tyrosine kinase binding			ovary(3)|skin(3)|upper_aerodigestive_tract(1)	7	Breast(1;5.06e-08)		OV - Ovarian serous cystadenocarcinoma(57;5.53e-09)			ATTTTATATTCCTTCCAGCCTC	0.361													22	47					0	0	0.004672	0	0
TRHR	7201	broad.mit.edu	37	8	110131616	110131616	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:110131616C>T	uc003ymz.3	+	2	1145	c.1129C>T	c.(1129-1131)CTG>TTG	p.L377L		NM_003301	NP_003292	P34981	TRFR_HUMAN	thyrotropin-releasing hormone receptor	377	Cytoplasmic (Potential).					integral to plasma membrane	thyrotropin-releasing hormone receptor activity			skin(2)|lung(1)	3			OV - Ovarian serous cystadenocarcinoma(57;2.3e-11)			TGACACTTACCTGTCTGCCAC	0.423													25	68					0	0	0.004656	0	0
NUDCD1	84955	broad.mit.edu	37	8	110255462	110255463	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:110255462_110255463GG>AA	uc003ynb.3	-	10	1638_1639	c.1527_1528CC>TT	c.(1525-1530)GCCCTT>GCTTTT	p.L510F	NUDCD1_uc003yna.2_Missense_Mutation_p.L481F|NUDCD1_uc010mcl.2_Missense_Mutation_p.L423F	NM_032869	NP_116258	Q96RS6	NUDC1_HUMAN	NudC domain containing 1 isoform 1	510								p.A509A(1)		ovary(1)|breast(1)	2	all_neural(195;0.219)		OV - Ovarian serous cystadenocarcinoma(57;1.56e-12)			CACTCACAAAGGGCTGCATACG	0.441													43	127					0	0	0.004672	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110439294	110439294	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:110439294G>A	uc003yne.2	+	25	3013	c.2909G>A	c.(2908-2910)GGA>GAA	p.G970E		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	970	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			GAGGGAATGGGAAGAATCTCA	0.552										HNSCC(38;0.096)			13	40					0	0	0.001855	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110451198	110451198	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:110451198G>A	uc003yne.2	+	32	3937	c.3833G>A	c.(3832-3834)GGA>GAA	p.G1278E		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	1278	Extracellular (Potential).|IPT/TIG 6.				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			GTGTATGTTGGAGGAAAAACC	0.343										HNSCC(38;0.096)			13	45					0	0	0.013537	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110453508	110453508	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:110453508C>T	uc003yne.2	+	34	4208	c.4104C>T	c.(4102-4104)TCC>TCT	p.S1368S		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	1368	Extracellular (Potential).|IPT/TIG 7.				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			TTCTAGGGTCCATCCCTTGCA	0.303										HNSCC(38;0.096)			3	11					0	0	0.004672	0	0
CSMD3	114788	broad.mit.edu	37	8	113392632	113392632	+	Missense_Mutation	SNP	A	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:113392632A>T	uc003ynu.2	-	38	6244	c.6085T>A	c.(6085-6087)TTT>ATT	p.F2029I	CSMD3_uc003yns.2_Missense_Mutation_p.F1231I|CSMD3_uc003ynt.2_Missense_Mutation_p.F1989I|CSMD3_uc011lhx.1_Missense_Mutation_p.F1925I	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	2029	Extracellular (Potential).|CUB 11.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						TCTGATTGAAAATTTAGATAC	0.318										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			30	64					0	0	0.013726	0	0
CSMD3	114788	broad.mit.edu	37	8	113516034	113516034	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:113516034G>A	uc003ynu.2	-	30	5227	c.5068C>T	c.(5068-5070)CAT>TAT	p.H1690Y	CSMD3_uc003yns.2_Missense_Mutation_p.H962Y|CSMD3_uc003ynt.2_Missense_Mutation_p.H1650Y|CSMD3_uc011lhx.1_Missense_Mutation_p.H1586Y	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	1690	Extracellular (Potential).|CUB 9.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						TATTCTAGATGAAATCCAGTG	0.323										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			11	48					0	0	0.010729	0	0
CSMD3	114788	broad.mit.edu	37	8	113518964	113518964	+	Silent	SNP	A	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:113518964A>T	uc003ynu.2	-	29	5010	c.4851T>A	c.(4849-4851)ACT>ACA	p.T1617T	CSMD3_uc003yns.2_Silent_p.T889T|CSMD3_uc003ynt.2_Silent_p.T1577T|CSMD3_uc011lhx.1_Silent_p.T1513T	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	1617	Extracellular (Potential).|CUB 9.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						TGACGGTGATAGTCCAGTCAC	0.393										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			8	36					0	0	0.004482	0	0
CSMD3	114788	broad.mit.edu	37	8	113585731	113585731	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:113585731G>A	uc003ynu.2	-	24	4200	c.4041C>T	c.(4039-4041)ACC>ACT	p.T1347T	CSMD3_uc003yns.2_Silent_p.T619T|CSMD3_uc003ynt.2_Silent_p.T1307T|CSMD3_uc011lhx.1_Silent_p.T1243T	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	1347	Extracellular (Potential).|CUB 7.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						AATACTTACTGGTATACACAA	0.353										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			7	54					0	0	0.003080	0	0
CSMD3	114788	broad.mit.edu	37	8	113668412	113668412	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:113668412G>A	uc003ynu.2	-	18	3134	c.2975C>T	c.(2974-2976)TCC>TTC	p.S992F	CSMD3_uc003yns.2_Missense_Mutation_p.S264F|CSMD3_uc003ynt.2_Missense_Mutation_p.S952F|CSMD3_uc011lhx.1_Missense_Mutation_p.S888F	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	992	Extracellular (Potential).|CUB 5.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						ACCATTATTGGAACGACTGTT	0.323										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			7	54					0	0	0.008291	0	0
CSMD3	114788	broad.mit.edu	37	8	113841934	113841934	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:113841934G>A	uc003ynu.2	-	12	1999	c.1840C>T	c.(1840-1842)CCT>TCT	p.P614S	CSMD3_uc003ynt.2_Missense_Mutation_p.P574S|CSMD3_uc011lhx.1_Missense_Mutation_p.P510S	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	614	Extracellular (Potential).|CUB 3.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						ACTGTCCTAGGATCTCCAACT	0.368										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			8	25					0	0	0.006214	0	0
CSMD3	114788	broad.mit.edu	37	8	113871494	113871494	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:113871494C>T	uc003ynu.2	-	11	1794	c.1635G>A	c.(1633-1635)GTG>GTA	p.V545V	CSMD3_uc003ynt.2_Silent_p.V505V|CSMD3_uc011lhx.1_Silent_p.V441V	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	545	Extracellular (Potential).|Sushi 2.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						CACACGTTTTCACTAAAAGAG	0.348										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			14	27					0	0	0.003163	0	0
SLC30A8	169026	broad.mit.edu	37	8	118184871	118184871	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:118184871C>T	uc003yoh.2	+	8	1291	c.1061C>T	c.(1060-1062)CCA>CTA	p.P354L	SLC30A8_uc010mcz.2_Missense_Mutation_p.P305L|SLC30A8_uc011lia.1_Missense_Mutation_p.P305L|SLC30A8_uc003yog.2_Missense_Mutation_p.P305L	NM_173851	NP_776250	Q8IWU4	ZNT8_HUMAN	solute carrier family 30 member 8	354	Cytoplasmic (Potential).				insulin secretion|positive regulation of insulin secretion|regulation of sequestering of zinc ion|regulation of vesicle-mediated transport|response to glucose stimulus|sequestering of zinc ion	integral to membrane|plasma membrane|secretory granule membrane|transport vesicle membrane	protein homodimerization activity|zinc ion transmembrane transporter activity			ovary(2)|skin(2)	4	all_cancers(13;2.11e-22)|Lung NSC(37;6.08e-05)|Ovarian(258;0.0173)		STAD - Stomach adenocarcinoma(47;0.203)			ATGGAATCTCCAGTTGACCAG	0.512													148	205					0	0	0.014410	0	0
EXT1	2131	broad.mit.edu	37	8	119122824	119122824	+	Missense_Mutation	SNP	A	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:119122824A>T	uc003yok.1	-	1	1235	c.462T>A	c.(460-462)TTT>TTA	p.F154L		NM_000127	NP_000118	Q16394	EXT1_HUMAN	exostosin 1	154	Lumenal (Potential).				glycosaminoglycan biosynthetic process|heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process|ossification|signal transduction|skeletal system development	Golgi membrane|integral to endoplasmic reticulum membrane	glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity|heparan sulfate N-acetylglucosaminyltransferase activity|N-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity			ovary(2)|lung(2)	4	all_cancers(13;2.36e-26)|Lung NSC(37;5.02e-07)|Ovarian(258;0.0173)		STAD - Stomach adenocarcinoma(47;0.012)			GACTCAGGACAAAGAGGCACG	0.498			Mis|N|F|S			exostoses|osteosarcoma			Hereditary_Multiple_Exostoses|Langer-Giedion_syndrome				46	68					0	0	0.011902	0	0
TNFRSF11B	4982	broad.mit.edu	37	8	119938929	119938929	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:119938929G>A	uc003yon.3	-	4	944	c.621C>T	c.(619-621)TTC>TTT	p.F207F	TNFRSF11B_uc010mdc.1_RNA	NM_002546	NP_002537	O00300	TR11B_HUMAN	osteoprotegerin precursor	207	Death 1.				apoptosis|skeletal system development		cytokine activity|receptor activity			central_nervous_system(2)	2	all_cancers(13;3.71e-26)|Lung NSC(37;1.69e-07)|Ovarian(258;0.018)|all_neural(195;0.0592)|Hepatocellular(40;0.234)		STAD - Stomach adenocarcinoma(47;0.00193)			CAGCAAACCTGAAGAATGCCT	0.403													9	17					0	0	0.004482	0	0
COLEC10	10584	broad.mit.edu	37	8	120079596	120079596	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:120079596C>T	uc003yoo.2	+	1	173	c.76C>T	c.(76-78)CTG>TTG	p.L26L		NM_006438	NP_006429	Q9Y6Z7	COL10_HUMAN	collectin sub-family member 10 precursor	26						collagen|cytoplasm	mannose binding			ovary(2)|skin(1)	3	all_cancers(13;4.13e-26)|Lung NSC(37;1.36e-07)|Ovarian(258;0.018)|Hepatocellular(40;0.234)		STAD - Stomach adenocarcinoma(47;0.00113)			AATTCAGAGTCTGGGTCTGGA	0.443													6	26					0	0	0.001984	0	0
DEPDC6	64798	broad.mit.edu	37	8	121015293	121015293	+	Missense_Mutation	SNP	T	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:121015293T>A	uc003yow.3	+	6	1055	c.868T>A	c.(868-870)TTC>ATC	p.F290I	DEPDC6_uc011lid.1_Missense_Mutation_p.F189I	NM_022783	NP_073620	Q8TB45	DPTOR_HUMAN	DEP domain containing 6	290	Ser-rich.				intracellular signal transduction|negative regulation of cell size|negative regulation of protein kinase activity|negative regulation of TOR signaling cascade|regulation of apoptosis	intracellular	protein binding				0	Lung NSC(37;9.35e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		STAD - Stomach adenocarcinoma(47;0.00185)			cagcggctacttcagcagcag	0.393													8	16					0	0	0.004482	0	0
COL14A1	7373	broad.mit.edu	37	8	121209076	121209076	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:121209076C>T	uc003yox.2	+	6	748	c.483C>T	c.(481-483)ATC>ATT	p.I161I	COL14A1_uc003yoy.2_5'UTR|COL14A1_uc010mde.1_5'UTR	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	161	VWFA 1.				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			ACATTGTAATCCTGGTCGATG	0.428													29	67					0	0	0.009535	0	0
COL14A1	7373	broad.mit.edu	37	8	121381671	121381671	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:121381671C>T	uc003yox.2	+	47	5523	c.5258C>T	c.(5257-5259)TCT>TTT	p.S1753F	COL14A1_uc003yoz.2_Missense_Mutation_p.S718F	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	1753	Triple-helical region 2 (COL1).				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			CAAGGTCCTTCTGGCCAGCCT	0.582													19	43					0	0	0.008871	0	0
MRPL13	28998	broad.mit.edu	37	8	121426320	121426320	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:121426320A>G	uc003ypa.2	-	6	738	c.425T>C	c.(424-426)GTA>GCA	p.V142A	MRPL13_uc010mdf.2_RNA	NM_014078	NP_054797	Q9BYD1	RM13_HUMAN	mitochondrial ribosomal protein L13	142					translation	mitochondrial large ribosomal subunit	protein binding|structural constituent of ribosome			central_nervous_system(1)	1	Lung NSC(37;1.69e-07)|Ovarian(258;0.00769)|all_neural(195;0.0804)|Hepatocellular(40;0.161)		STAD - Stomach adenocarcinoma(47;0.00503)			AAGCTCCTCTACTAAATTCTT	0.303													16	14					0	0	0.004007	0	0
HAS2	3037	broad.mit.edu	37	8	122626715	122626715	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:122626715G>A	uc003yph.2	-	4	1831	c.1293C>T	c.(1291-1293)ATC>ATT	p.I431I		NM_005328	NP_005319	Q92819	HAS2_HUMAN	hyaluronan synthase 2	431	Helical; Name=5; (Potential).					integral to plasma membrane	hyaluronan synthase activity		HAS2/PLAG1(10)	soft_tissue(10)|ovary(5)	15	Lung NSC(37;3.12e-08)|Ovarian(258;0.0254)|Hepatocellular(40;0.0997)|all_neural(195;0.142)		STAD - Stomach adenocarcinoma(47;0.00503)			AGACCATGACGATATTTCCTC	0.423													30	82					0	0	0.009535	0	0
ATAD2	29028	broad.mit.edu	37	8	124371873	124371873	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:124371873G>A	uc003yqh.3	-	10	1318	c.1210C>T	c.(1210-1212)CGA>TGA	p.R404*	ATAD2_uc011lii.1_Nonsense_Mutation_p.R195*|ATAD2_uc003yqi.3_RNA|ATAD2_uc003yqj.2_Nonsense_Mutation_p.R404*	NM_014109	NP_054828	Q6PL18	ATAD2_HUMAN	ATPase family, AAA domain containing 2	404					regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrion|nucleus	ATP binding|ATPase activity			ovary(2)	2	Lung NSC(37;1.25e-09)|Ovarian(258;0.00838)		STAD - Stomach adenocarcinoma(47;0.00288)			ATTTTCATTCGATCTTTATAA	0.353													9	33					0	0	0.010729	0	0
KLHL38	340359	broad.mit.edu	37	8	124658100	124658100	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:124658100G>A	uc003yqs.1	-	3	1649	c.1625C>T	c.(1624-1626)TCC>TTC	p.S542F		NM_001081675	NP_001075144	Q2WGJ6	KLH38_HUMAN	kelch-like 38	542	Kelch 6.										0						GCAATCGAAGGAGGCGGAGTC	0.617													20	62					0	0	0.008871	0	0
KLHL38	340359	broad.mit.edu	37	8	124664648	124664648	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:124664648C>T	uc003yqs.1	-	1	543	c.519G>A	c.(517-519)AAG>AAA	p.K173K		NM_001081675	NP_001075144	Q2WGJ6	KLH38_HUMAN	kelch-like 38	173	BACK.										0						CACAGAGCTCCTTCAGGTCGG	0.557													30	48					0	0	0.004289	0	0
FER1L6	654463	broad.mit.edu	37	8	125015487	125015487	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:125015487C>T	uc003yqw.2	+	13	1806	c.1600C>T	c.(1600-1602)CCA>TCA	p.P534S	uc003yqx.1_Intron	NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	534	Cytoplasmic (Potential).					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			AGACCTCCTTCCACTGCTTCA	0.527													28	36					0	0	0.005443	0	0
FER1L6	654463	broad.mit.edu	37	8	125061997	125061997	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:125061997G>A	uc003yqw.2	+	22	3080	c.2874G>A	c.(2872-2874)CAG>CAA	p.Q958Q	uc003yqy.1_Intron	NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	958	Cytoplasmic (Potential).					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			AACTGCTGCAGGTGAGTGAAC	0.522													16	83					0	0	0.007413	0	0
FER1L6	654463	broad.mit.edu	37	8	125082726	125082726	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:125082726G>A	uc003yqw.2	+	30	4059	c.3853G>A	c.(3853-3855)GAG>AAG	p.E1285K	uc003yqy.1_Intron	NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	1285	Cytoplasmic (Potential).					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			CGGTGATCTCGAGAGTGAATT	0.418													16	99					0	0	0.007413	0	0
TRMT12	55039	broad.mit.edu	37	8	125463294	125463294	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:125463294C>T	uc003yra.3	+	1	247	c.126C>T	c.(124-126)CTC>CTT	p.L42L		NM_017956	NP_060426	Q53H54	TYW2_HUMAN	homolog of yeast tRNA methyltransferase 12	42					tRNA processing		methyltransferase activity			upper_aerodigestive_tract(1)	1	Ovarian(258;0.00438)|all_neural(195;0.0779)|Hepatocellular(40;0.108)		STAD - Stomach adenocarcinoma(47;0.00288)			GGCAGAAACTCTTTGATACAC	0.557													8	40					0	0	0.004482	0	0
POU5F1B	5462	broad.mit.edu	37	8	128428154	128428154	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:128428154C>T	uc003ysf.2	+	1	298	c.43C>T	c.(43-45)CCA>TCA	p.P15S	uc003ysc.1_Intron|uc003ysd.1_Intron|LOC727677_uc003yse.1_Intron	NM_001159542	NP_001153014	Q06416	P5F1B_HUMAN	POU class 5 homeobox 1B	15						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						CTCGCCCCCTCCAGGCGGTGG	0.642													6	10					0	0	0.001168	0	0
ADCY8	114	broad.mit.edu	37	8	131792772	131792772	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:131792772C>T	uc003ytd.3	-	18	3876	c.3620G>A	c.(3619-3621)AGG>AAG	p.R1207K	ADCY8_uc010mds.2_Missense_Mutation_p.R1076K	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	1207	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			CTGCTTCTGCCTTTGCCTATT	0.557										HNSCC(32;0.087)			20	54					0	0	0.007413	0	0
ADCY8	114	broad.mit.edu	37	8	131792904	131792904	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:131792904C>T	uc003ytd.3	-	18	3744	c.3488G>A	c.(3487-3489)GGA>GAA	p.G1163E	ADCY8_uc010mds.2_Missense_Mutation_p.G1032E	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	1163	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			TTTGATTTTTCCTTCCTGTTC	0.512										HNSCC(32;0.087)			24	50					0	0	0.003330	0	0
ADCY8	114	broad.mit.edu	37	8	131792927	131792927	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:131792927C>T	uc003ytd.3	-	18	3721	c.3465G>A	c.(3463-3465)GTG>GTA	p.V1155V	ADCY8_uc010mds.2_Silent_p.V1024V	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	1155	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			TGATACCCTTCACATAGATCT	0.517										HNSCC(32;0.087)			31	59					0	0	0.009535	0	0
OC90	729330	broad.mit.edu	37	8	133044178	133044178	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:133044178G>A	uc003ytg.2	-	11	981	c.981C>T	c.(979-981)GGC>GGT	p.G327G	OC90_uc011lix.1_Silent_p.G327G	NM_001080399	NP_001073868	Q02509	OC90_HUMAN	otoconin 90	343	Phospholipase A2-like 2.				lipid catabolic process|phospholipid metabolic process		calcium ion binding|phospholipase A2 activity			ovary(2)|skin(1)	3	Esophageal squamous(12;0.00693)|Ovarian(258;0.00769)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000805)			CACAGTAACAGCCATAAGACT	0.542													19	32					0	0	0.007413	0	0
OC90	729330	broad.mit.edu	37	8	133048626	133048626	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:133048626G>A	uc003ytg.2	-	8	671	c.671C>T	c.(670-672)TCC>TTC	p.S224F	OC90_uc011lix.1_Intron	NM_001080399	NP_001073868	Q02509	OC90_HUMAN	otoconin 90	240					lipid catabolic process|phospholipid metabolic process		calcium ion binding|phospholipase A2 activity			ovary(2)|skin(1)	3	Esophageal squamous(12;0.00693)|Ovarian(258;0.00769)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000805)			ACTTTTCTTGGAGAGAGTGAT	0.448													19	45					0	0	0.012319	0	0
KCNQ3	3786	broad.mit.edu	37	8	133141540	133141540	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:133141540G>A	uc003ytj.2	-	15	2813	c.2588C>T	c.(2587-2589)TCA>TTA	p.S863L	KCNQ3_uc010mdt.2_Missense_Mutation_p.S851L|uc003yti.2_5'Flank	NM_004519	NP_004510	O43525	KCNQ3_HUMAN	potassium voltage-gated channel KQT-like protein	863					axon guidance|synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Esophageal squamous(12;0.00507)|Ovarian(258;0.00579)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000311)			GGTCCATACTGAATCAGAAAT	0.532													11	43					0	0	0.013537	0	0
KCNQ3	3786	broad.mit.edu	37	8	133144457	133144457	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:133144457C>T	uc003ytj.2	-	14	2079	c.1854G>A	c.(1852-1854)ATG>ATA	p.M618I	KCNQ3_uc010mdt.2_Missense_Mutation_p.M606I	NM_004519	NP_004510	O43525	KCNQ3_HUMAN	potassium voltage-gated channel KQT-like protein	618					axon guidance|synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Esophageal squamous(12;0.00507)|Ovarian(258;0.00579)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000311)			ACTTCCCCATCATGCTTTGGT	0.348													4	24					0	0	0.009096	0	0
KCNQ3	3786	broad.mit.edu	37	8	133192419	133192419	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:133192419G>A	uc003ytj.2	-	4	987	c.762C>T	c.(760-762)ATC>ATT	p.I254I	KCNQ3_uc010mdt.2_Silent_p.I254I	NM_004519	NP_004510	O43525	KCNQ3_HUMAN	potassium voltage-gated channel KQT-like protein	254					axon guidance|synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Esophageal squamous(12;0.00507)|Ovarian(258;0.00579)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000311)			TGTGGGCACAGATGGCTGAGC	0.597													24	42					0	0	0.004656	0	0
PHF20L1	51105	broad.mit.edu	37	8	133844532	133844532	+	Silent	SNP	T	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:133844532T>A	uc003ytt.2	+	15	2122	c.1797T>A	c.(1795-1797)TCT>TCA	p.S599S	PHF20L1_uc011lja.1_Silent_p.S573S	NM_016018	NP_057102	A8MW92	P20L1_HUMAN	PHD finger protein 20-like 1 isoform 1	599							nucleic acid binding|zinc ion binding			ovary(2)	2	all_neural(3;2.72e-06)|Medulloblastoma(3;7.08e-05)|Ovarian(258;0.00438)|Esophageal squamous(12;0.00507)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;4.46e-05)			GGTGCTCTTCTCCACTAACTC	0.393													27	70					0	0	0.012213	0	0
TG	7038	broad.mit.edu	37	8	133894774	133894774	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:133894774C>T	uc003ytw.2	+	7	847	c.806C>T	c.(805-807)TCC>TTC	p.S269F		NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	269	Thyroglobulin type-1 3.				hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		GACCTTCCTTCCACCTTCACT	0.463													41	125					0	0	0.008740	0	0
TG	7038	broad.mit.edu	37	8	133899330	133899330	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:133899330C>T	uc003ytw.2	+	9	1754	c.1713C>T	c.(1711-1713)CTC>CTT	p.L571L		NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	571					hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		TTGCTTCTCTCCTGGAGCTTC	0.438													23	35					0	0	0.002780	0	0
TG	7038	broad.mit.edu	37	8	133923647	133923647	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:133923647C>T	uc003ytw.2	+	19	4069	c.4028C>T	c.(4027-4029)TCC>TTC	p.S1343F	TG_uc010mdw.2_Missense_Mutation_p.S102F	NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	1343					hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		ACCCTGGTTTCCATTCCTGTC	0.488													45	65					0	0	0.014410	0	0
TG	7038	broad.mit.edu	37	8	133925407	133925407	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:133925407C>T	uc003ytw.2	+	20	4316	c.4275C>T	c.(4273-4275)CTC>CTT	p.L1425L	TG_uc010mdw.2_Silent_p.L184L	NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	1425					hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		TCCGCTTCCTCCAAGGGGACC	0.557													7	41					0	0	0.001984	0	0
TG	7038	broad.mit.edu	37	8	133935696	133935696	+	Missense_Mutation	SNP	G	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:133935696G>T	uc003ytw.2	+	22	4683	c.4642G>T	c.(4642-4644)GGG>TGG	p.G1548W	TG_uc010mdw.2_Missense_Mutation_p.G307W|TG_uc011ljb.1_5'UTR|TG_uc003ytx.1_Intron	NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	1548	Thyroglobulin type-1 11.				hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		GGACGGCGAGGGGCGGAGGCT	0.597													15	42					7.05477e-17	7.61978e-17	0.004990	1	0
FAM135B	51059	broad.mit.edu	37	8	139151271	139151271	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:139151271C>T	uc003yuy.2	-	18	4030	c.3859G>A	c.(3859-3861)GAT>AAT	p.D1287N	FAM135B_uc003yux.2_Missense_Mutation_p.D1188N|FAM135B_uc003yuz.2_RNA	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	1287										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			TTGCGCAAATCAGCATTATCC	0.408										HNSCC(54;0.14)			23	51					0	0	0.002780	0	0
FAM135B	51059	broad.mit.edu	37	8	139153476	139153476	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:139153476C>T	uc003yuy.2	-	17	3926	c.3755G>A	c.(3754-3756)GGA>GAA	p.G1252E	FAM135B_uc003yux.2_Missense_Mutation_p.G1153E|FAM135B_uc003yuz.2_RNA	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	1252										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			GTACAGGGTTCCCAGGTGAGG	0.537										HNSCC(54;0.14)			26	43					0	0	0.004656	0	0
PTK2	5747	broad.mit.edu	37	8	141675044	141675044	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:141675044G>A	uc003yvu.2	-	31	3148	c.2918C>T	c.(2917-2919)CCC>CTC	p.P973L	PTK2_uc011ljp.1_Missense_Mutation_p.P281L|PTK2_uc003yvo.2_Missense_Mutation_p.P601L|PTK2_uc011ljq.1_Missense_Mutation_p.P671L|PTK2_uc003yvp.2_Missense_Mutation_p.P641L|PTK2_uc003yvq.2_Missense_Mutation_p.P478L|PTK2_uc003yvr.2_Missense_Mutation_p.P916L|PTK2_uc003yvs.2_Missense_Mutation_p.P927L|PTK2_uc003yvt.2_Missense_Mutation_p.P995L|PTK2_uc003yvv.2_Missense_Mutation_p.P876L|PTK2_uc011ljr.1_Missense_Mutation_p.P986L	NM_153831	NP_722560	Q05397	FAK1_HUMAN	PTK2 protein tyrosine kinase 2 isoform a	973	Interaction with TGFB1I1.|Interaction with RGNEF (By similarity).				axon guidance|blood coagulation|cellular component disassembly involved in apoptosis|ephrin receptor signaling pathway|growth hormone receptor signaling pathway|integrin-mediated signaling pathway|peptidyl-tyrosine phosphorylation|protein autophosphorylation|regulation of cell adhesion mediated by integrin|signal complex assembly	cytoskeleton|cytosol|focal adhesion	ATP binding|JUN kinase binding|non-membrane spanning protein tyrosine kinase activity|SH2 domain binding|signal transducer activity			ovary(2)|lung(2)|central_nervous_system(1)|skin(1)	6	all_cancers(97;1.05e-15)|all_epithelial(106;2.09e-14)|Lung NSC(106;1.61e-06)|all_lung(105;2.5e-06)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)	Ovarian(118;2.72e-05)|Breast(495;0.159)	BRCA - Breast invasive adenocarcinoma(115;0.137)			TGGTAGGAGGGGAATGGTCTC	0.532													6	33					0	0	0.004482	0	0
DENND3	22898	broad.mit.edu	37	8	142186792	142186792	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:142186792G>A	uc003yvy.2	+	15	2676	c.2398G>A	c.(2398-2400)GAG>AAG	p.E800K	DENND3_uc010mep.2_Missense_Mutation_p.E761K	NM_014957	NP_055772	A2RUS2	DEND3_HUMAN	DENN/MADD domain containing 3	800										ovary(1)	1	all_cancers(97;7.36e-15)|all_epithelial(106;2.33e-13)|Lung NSC(106;1.23e-05)|all_lung(105;1.75e-05)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.105)			CCTGAAAACCGAGTGTGACCT	0.522													27	53					0	0	0.006320	0	0
LYNX1	66004	broad.mit.edu	37	8	143846075	143846075	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:143846075C>T	uc003yxb.2	-	5	971	c.344G>A	c.(343-345)GGC>GAC	p.G115D	LYNX1_uc003yxa.2_Missense_Mutation_p.G81D	NM_023946	NP_076435	Q9BZG9	LYNX1_HUMAN	Ly-6 neurotoxin-like protein 1 isoform a	Error:Variant_position_missing_in_Q9BZG9_after_alignment						anchored to membrane|plasma membrane					0	all_cancers(97;3.96e-12)|all_epithelial(106;1.19e-08)|Lung NSC(106;0.000413)|all_lung(105;0.00106)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)					TACGTAGGGGCCCAGGCCCAG	0.652													28	49					0	0	0.006320	0	0
GLI4	2738	broad.mit.edu	37	8	144358575	144358575	+	Nonsense_Mutation	SNP	C	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:144358575C>A	uc003yxx.2	+	4	817	c.732C>A	c.(730-732)TGC>TGA	p.C244*	ZFP41_uc003yxv.2_RNA	NM_138465	NP_612474	P10075	GLI4_HUMAN	GLI-Kruppel family member GLI4	244	C2H2-type 3.					nucleus	DNA binding|zinc ion binding				0	all_cancers(97;1.01e-10)|all_epithelial(106;4.86e-09)|Lung NSC(106;0.000167)|all_lung(105;0.000459)|Ovarian(258;0.0212)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.156)|Colorectal(110;0.173)			GCGGCCAGTGCGGCCGCGCCT	0.687													18	22					1.00905e-13	1.08863e-13	0.008871	1	0
EPPK1	83481	broad.mit.edu	37	8	144940440	144940440	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:144940440C>T	uc003zaa.1	-	2	15005	c.14992G>A	c.(14992-14994)GAC>AAC	p.D4998N		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	4998	Plectin 63.					cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			ACGATGAGGTCCTTCTGCATG	0.692													14	248					0	0	0.012319	0	0
PLEC	5339	broad.mit.edu	37	8	144996879	144996879	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:144996879G>A	uc003zaf.1	-	31	7799	c.7629C>T	c.(7627-7629)TTC>TTT	p.F2543F	PLEC_uc003zab.1_Silent_p.F2406F|PLEC_uc003zac.1_Silent_p.F2410F|PLEC_uc003zad.2_Silent_p.F2406F|PLEC_uc003zae.1_Silent_p.F2374F|PLEC_uc003zag.1_Silent_p.F2384F|PLEC_uc003zah.2_Silent_p.F2392F|PLEC_uc003zaj.2_Silent_p.F2433F	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin isoform 1	2543	Central fibrous rod domain.|Potential.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|hemidesmosome|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	9						CCTGCTTCCGGAAGCGCTGGG	0.677													8	12					0	0	0.003080	0	0
PARP10	84875	broad.mit.edu	37	8	145058554	145058554	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:145058554G>A	uc003zal.3	-	6	1612	c.1504C>T	c.(1504-1506)CGG>TGG	p.R502W	PARP10_uc003zak.3_Missense_Mutation_p.R208W|PARP10_uc011lku.1_Missense_Mutation_p.R514W|PARP10_uc011lkv.1_RNA|PARP10_uc003zam.2_Missense_Mutation_p.R502W	NM_032789	NP_116178	Q53GL7	PAR10_HUMAN	poly (ADP-ribose) polymerase family, member 10	502						Golgi apparatus|nucleolus	NAD+ ADP-ribosyltransferase activity|nucleotide binding			ovary(2)|upper_aerodigestive_tract(1)|lung(1)|breast(1)|pancreas(1)	6	all_cancers(97;8.2e-11)|all_epithelial(106;1.1e-09)|Lung NSC(106;5.89e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.31e-40)|Epithelial(56;1.16e-39)|all cancers(56;6.43e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			AGCAGGCTCCGCAGAAACTCC	0.617													9	15					0	0	0.006214	0	0
SPATC1	375686	broad.mit.edu	37	8	145095983	145095983	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:145095983C>T	uc011lkw.1	+	3	1383	c.1281C>T	c.(1279-1281)ACC>ACT	p.T427T	SPATC1_uc011lkx.1_Silent_p.T427T	NM_198572	NP_940974	Q76KD6	SPERI_HUMAN	spermatogenesis and centriole associated 1	427										ovary(1)|central_nervous_system(1)	2	all_cancers(97;8.2e-11)|all_epithelial(106;1.1e-09)|Lung NSC(106;5.89e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;6.79e-41)|Epithelial(56;1.02e-39)|all cancers(56;3.67e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			ACCGCAAGACCAGCAAGTTCC	0.672													9	25					0	0	0.008291	0	0
OPLAH	26873	broad.mit.edu	37	8	145111556	145111556	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:145111556G>A	uc003zar.3	-	13	1891	c.1809C>T	c.(1807-1809)CCC>CCT	p.P603P	OPLAH_uc003zas.1_5'Flank	NM_017570	NP_060040	O14841	OPLA_HUMAN	5-oxoprolinase (ATP-hydrolysing)	603							5-oxoprolinase (ATP-hydrolyzing) activity|ATP binding				0	all_cancers(97;1.06e-10)|all_epithelial(106;1.5e-09)|Lung NSC(106;5.89e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;6.79e-41)|Epithelial(56;1.02e-39)|all cancers(56;2.24e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)		L-Glutamic Acid(DB00142)	CCCCCGCACGGGGCGAGCGGG	0.672													6	20					0	0	0.001168	0	0
SLC39A4	55630	broad.mit.edu	37	8	145641426	145641426	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:145641426C>T	uc003zcq.2	-	2	342	c.242G>A	c.(241-243)GGG>GAG	p.G81E	SLC39A4_uc003zcm.1_5'Flank|SLC39A4_uc003zcn.2_5'Flank|SLC39A4_uc003zco.2_5'Flank|SLC39A4_uc003zcp.2_Missense_Mutation_p.G56E	NM_130849	NP_570901	Q6P5W5	S39A4_HUMAN	solute carrier family 39 (zinc transporter),	81	Extracellular (Potential).					cytoplasmic membrane-bounded vesicle|integral to membrane|recycling endosome membrane	zinc ion transmembrane transporter activity				0	all_cancers(97;6.64e-12)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.08e-41)|Epithelial(56;1.12e-40)|all cancers(56;8.17e-36)|BRCA - Breast invasive adenocarcinoma(115;0.0407)|Colorectal(110;0.055)			CGGGGGCAGCCCTGACCCCTC	0.726													6	9					0	0	0.003080	0	0
ARHGAP39	80728	broad.mit.edu	37	8	145773399	145773399	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:145773399G>A	uc003zdt.1	-	6	1626	c.1071C>T	c.(1069-1071)CTC>CTT	p.L357L	ARHGAP39_uc011llk.1_Silent_p.L357L|ARHGAP39_uc003zds.1_Silent_p.L357L	NM_025251	NP_079527	Q9C0H5	RHG39_HUMAN	KIAA1688 protein	357	Pro-rich.				axon guidance|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytoskeleton|cytosol|nucleus	GTPase activator activity				0						TGTTGGGCTGGAGGAACGGCC	0.697													8	18					0	0	0.003080	0	0
ZNF251	90987	broad.mit.edu	37	8	145947750	145947750	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr8:145947750G>A	uc003zdv.3	-	5	1551	c.1295C>T	c.(1294-1296)CCC>CTC	p.P432L		NM_138367	NP_612376	Q9BRH9	ZN251_HUMAN	zinc finger protein 251	432					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(97;3.54e-11)|all_epithelial(106;2.65e-10)|Lung NSC(106;4.08e-05)|all_lung(105;0.000125)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.75e-39)|Epithelial(56;7.54e-38)|all cancers(56;6.19e-33)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.11)	GBM - Glioblastoma multiforme(99;0.198)		ACAAACATAGGGTTTTTCTCC	0.458													29	56					0	0	0.008361	0	0
DMRT3	58524	broad.mit.edu	37	9	990474	990474	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:990474G>A	uc003zgw.1	+	2	926	c.888G>A	c.(886-888)GAG>GAA	p.E296E		NM_021240	NP_067063	Q9NQL9	DMRT3_HUMAN	doublesex and mab-3 related transcription factor	296					cell differentiation|multicellular organismal development|sex differentiation	nucleus	DNA binding|metal ion binding|sequence-specific DNA binding transcription factor activity			ovary(2)|central_nervous_system(1)	3		all_lung(10;1.39e-08)|Lung NSC(10;1.42e-08)		Lung(218;0.0196)		CGGGAGCAGAGCGAACTTCCG	0.582													22	35					0	0	0.010504	0	0
DMRT3	58524	broad.mit.edu	37	9	990650	990650	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:990650C>T	uc003zgw.1	+	2	1102	c.1064C>T	c.(1063-1065)GCT>GTT	p.A355V		NM_021240	NP_067063	Q9NQL9	DMRT3_HUMAN	doublesex and mab-3 related transcription factor	355					cell differentiation|multicellular organismal development|sex differentiation	nucleus	DNA binding|metal ion binding|sequence-specific DNA binding transcription factor activity			ovary(2)|central_nervous_system(1)	3		all_lung(10;1.39e-08)|Lung NSC(10;1.42e-08)		Lung(218;0.0196)		AGTCCCTTGGCTGGGCCTCTG	0.582													27	34					0	0	0.013726	0	0
VLDLR	7436	broad.mit.edu	37	9	2647568	2647568	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:2647568C>T	uc003zhk.1	+	12	2195	c.1798C>T	c.(1798-1800)CAG>TAG	p.Q600*	VLDLR_uc003zhl.1_Nonsense_Mutation_p.Q600*|VLDLR_uc003zhm.1_RNA|VLDLR_uc003zhn.1_Nonsense_Mutation_p.Q559*	NM_003383	NP_003374	P98155	VLDLR_HUMAN	very low density lipoprotein receptor isoform a	600	Extracellular (Potential).|LDL-receptor class B 4.				cholesterol metabolic process|endocytosis|lipid transport|memory|very-low-density lipoprotein particle clearance	coated pit|integral to membrane|membrane fraction|plasma membrane|very-low-density lipoprotein particle	apolipoprotein binding|calcium ion binding|low-density lipoprotein receptor activity|very-low-density lipoprotein particle receptor activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3				GBM - Glioblastoma multiforme(50;0.0668)|Lung(218;0.123)		AGCGGATATCCAGTGGCCTAA	0.433													4	29					0	0	0.000602	0	0
VLDLR	7436	broad.mit.edu	37	9	2648285	2648285	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:2648285C>T	uc003zhk.1	+	13	2297	c.1900C>T	c.(1900-1902)CGT>TGT	p.R634C	VLDLR_uc003zhl.1_Missense_Mutation_p.R634C|VLDLR_uc003zhm.1_RNA|VLDLR_uc003zhn.1_Missense_Mutation_p.R593C	NM_003383	NP_003374	P98155	VLDLR_HUMAN	very low density lipoprotein receptor isoform a	634	LDL-receptor class B 5.|Extracellular (Potential).				cholesterol metabolic process|endocytosis|lipid transport|memory|very-low-density lipoprotein particle clearance	coated pit|integral to membrane|membrane fraction|plasma membrane|very-low-density lipoprotein particle	apolipoprotein binding|calcium ion binding|low-density lipoprotein receptor activity|very-low-density lipoprotein particle receptor activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3				GBM - Glioblastoma multiforme(50;0.0668)|Lung(218;0.123)		TGGCCAAGATCGTAGGATAGT	0.408													40	39					0	0	0.007835	0	0
KCNV2	169522	broad.mit.edu	37	9	2718181	2718181	+	Missense_Mutation	SNP	G	A	A	rs140256288		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:2718181G>A	uc003zho.1	+	1	656	c.442G>A	c.(442-444)GAA>AAA	p.E148K		NM_133497	NP_598004	Q8TDN2	KCNV2_HUMAN	potassium channel, subfamily V, member 2	148	Cytoplasmic (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)|central_nervous_system(1)	2				GBM - Glioblastoma multiforme(50;0.0257)		GCAGACAGACGAATACTTCTT	0.657													5	20					0	0	0.001168	0	0
RFX3	5991	broad.mit.edu	37	9	3225181	3225181	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:3225181G>A	uc003zhr.2	-	18	2423	c.2111C>T	c.(2110-2112)CCA>CTA	p.P704L	RFX3_uc010mhd.2_Missense_Mutation_p.P704L	NM_134428	NP_602304	P48380	RFX3_HUMAN	regulatory factor X3 isoform b	704					cell maturation|ciliary cell motility|cilium assembly|cilium movement involved in determination of left/right asymmetry|endocrine pancreas development|negative regulation of transcription, DNA-dependent|positive regulation of transcription from RNA polymerase II promoter|positive regulation of type B pancreatic cell development|regulation of insulin secretion	nuclear chromatin	protein binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding			ovary(2)|central_nervous_system(1)|pancreas(1)	4				GBM - Glioblastoma multiforme(50;0.00124)|Lung(2;0.0337)		GCAGCCCACTGGAAATGCCTG	0.488													11	15					0	0	0.010729	0	0
GLIS3	169792	broad.mit.edu	37	9	4118013	4118013	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:4118013C>T	uc003zhw.1	-	3	1194	c.1000G>A	c.(1000-1002)GAC>AAC	p.D334N	GLIS3_uc003zhx.1_Missense_Mutation_p.D489N|GLIS3_uc003zic.1_Missense_Mutation_p.D489N|GLIS3_uc003zie.1_Missense_Mutation_p.D489N|GLIS3_uc010mhh.1_Missense_Mutation_p.D364N|GLIS3_uc003zid.1_Missense_Mutation_p.D267N|GLIS3_uc010mhi.1_Missense_Mutation_p.D296N|GLIS3_uc003zif.1_Missense_Mutation_p.D267N|GLIS3_uc003zig.1_Missense_Mutation_p.D333N|GLIS3_uc003zih.1_Missense_Mutation_p.D267N|GLIS3_uc003zhy.1_Missense_Mutation_p.D267N|GLIS3_uc003zhz.1_Missense_Mutation_p.D267N|GLIS3_uc003zib.1_Missense_Mutation_p.D333N|GLIS3_uc010mhg.1_Missense_Mutation_p.D267N	NM_152629	NP_689842	Q8NEA6	GLIS3_HUMAN	GLIS family zinc finger 3 isoform b	334					negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter		DNA binding|zinc ion binding			ovary(1)	1		Acute lymphoblastic leukemia(2;0.00464)|Breast(48;0.148)		Lung(2;0.00163)|GBM - Glioblastoma multiforme(50;0.00301)|LUSC - Lung squamous cell carcinoma(2;0.0148)		TCCCCGTCGTCGTCCAGGGTG	0.622													27	30					0	0	0.006320	0	0
GLIS3	169792	broad.mit.edu	37	9	4118600	4118600	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:4118600G>A	uc003zhw.1	-	3	607	c.413C>T	c.(412-414)TCC>TTC	p.S138F	GLIS3_uc003zhx.1_Missense_Mutation_p.S293F|GLIS3_uc003zic.1_Missense_Mutation_p.S293F|GLIS3_uc003zie.1_Missense_Mutation_p.S293F|GLIS3_uc010mhh.1_Missense_Mutation_p.S168F|GLIS3_uc003zid.1_Missense_Mutation_p.S71F|GLIS3_uc010mhi.1_Missense_Mutation_p.S100F|GLIS3_uc003zif.1_Missense_Mutation_p.S71F|GLIS3_uc003zig.1_Missense_Mutation_p.S137F|GLIS3_uc003zih.1_Missense_Mutation_p.S71F|GLIS3_uc003zhy.1_Missense_Mutation_p.S71F|GLIS3_uc003zhz.1_Missense_Mutation_p.S71F|GLIS3_uc003zib.1_Missense_Mutation_p.S137F|GLIS3_uc010mhg.1_Missense_Mutation_p.S71F	NM_152629	NP_689842	Q8NEA6	GLIS3_HUMAN	GLIS family zinc finger 3 isoform b	138	Ser-rich.				negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter		DNA binding|zinc ion binding			ovary(1)	1		Acute lymphoblastic leukemia(2;0.00464)|Breast(48;0.148)		Lung(2;0.00163)|GBM - Glioblastoma multiforme(50;0.00301)|LUSC - Lung squamous cell carcinoma(2;0.0148)		GGCCGAGTGGGACCTGGTGGA	0.552													11	91					0	0	0.010729	0	0
GLIS3	169792	broad.mit.edu	37	9	4286016	4286016	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:4286016G>A	uc003zii.1	-	2	1123	c.410C>T	c.(409-411)CCT>CTT	p.P137L	GLIS3_uc003zhx.1_Intron|GLIS3_uc003zic.1_Intron|GLIS3_uc003zie.1_Intron|GLIS3_uc010mhh.1_Intron|GLIS3_uc003zid.1_Intron|GLIS3_uc010mhi.1_Intron|GLIS3_uc003zif.1_Intron|GLIS3_uc003zig.1_Intron|GLIS3_uc003zih.1_Intron			Q8NEA6	GLIS3_HUMAN	SubName: Full=GLIS family zinc finger 3 transcript variant TS2; SubName: Full=GLIS family zinc finger 3 transcript variant TS3; SubName: Full=GLIS family zinc finger 3 transcript variant TS4; SubName: Full=GLIS family zinc finger 3 transcript variant TS5; Flags: Fragment;	152	Ser-rich.				negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter		DNA binding|zinc ion binding			ovary(1)	1		Acute lymphoblastic leukemia(2;0.00464)|Breast(48;0.148)		Lung(2;0.00163)|GBM - Glioblastoma multiforme(50;0.00301)|LUSC - Lung squamous cell carcinoma(2;0.0148)		ATTTTTAAAAGGTTCCAGAAA	0.428													25	36					0	0	0.006320	0	0
SLC1A1	6505	broad.mit.edu	37	9	4566058	4566058	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:4566058C>T	uc003zij.1	+	5	688	c.452C>T	c.(451-453)CCT>CTT	p.P151L	C9orf68_uc003zik.2_Intron	NM_004170	NP_004161	P43005	EAA3_HUMAN	solute carrier family 1, member 1	151	Extracellular (Potential).				D-aspartate import|L-glutamate import|synaptic transmission	integral to plasma membrane|membrane fraction	high-affinity glutamate transmembrane transporter activity|sodium:dicarboxylate symporter activity				0		Acute lymphoblastic leukemia(2;0.0359)|Breast(48;0.0457)		GBM - Glioblastoma multiforme(50;0.0124)|Lung(218;0.183)	L-Aspartic Acid(DB00128)|L-Glutamic Acid(DB00142)	AATATGTTCCCTGAGAATCTT	0.328													11	69					0	0	0.001855	0	0
C9orf46	55848	broad.mit.edu	37	9	5361791	5361791	+	Missense_Mutation	SNP	A	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:5361791A>T	uc003zjc.2	-	4	383	c.179T>A	c.(178-180)TTT>TAT	p.F60Y	C9orf46_uc003zjd.2_Missense_Mutation_p.F60Y	NM_018465	NP_060935	Q9HBL7	CI046_HUMAN	hypothetical protein LOC55848	60	Helical; (Potential).					integral to membrane				ovary(1)	1	all_hematologic(13;0.158)	Acute lymphoblastic leukemia(23;0.154)		GBM - Glioblastoma multiforme(50;0.00106)|Lung(218;0.125)		AAGGCCAAAAAAAGTTCCAAA	0.388													12	27					0	0	0.013537	0	0
IL33	90865	broad.mit.edu	37	9	6252872	6252872	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:6252872C>T	uc003zjt.2	+	5	407	c.350C>T	c.(349-351)TCA>TTA	p.S117L	IL33_uc011lmg.1_Intron|IL33_uc011lmh.1_Intron|IL33_uc003zju.1_Missense_Mutation_p.S117L	NM_033439	NP_254274	O95760	IL33_HUMAN	interleukin 33 precursor	117					positive regulation of chemokine secretion|positive regulation of inflammatory response|positive regulation of macrophage activation|positive regulation of transcription from RNA polymerase II promoter	extracellular space	cytokine activity				0		Acute lymphoblastic leukemia(23;0.158)|Prostate(43;0.167)		GBM - Glioblastoma multiforme(50;0.0161)|Lung(218;0.105)		ACAGGAATTTCACCTATTACA	0.318													14	47					0	0	0.007413	0	0
PTPRD	5789	broad.mit.edu	37	9	8331682	8331682	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:8331682C>T	uc003zkk.2	-	43	6145	c.5434G>A	c.(5434-5436)GGA>AGA	p.G1812R	PTPRD_uc003zkp.2_Missense_Mutation_p.G1406R|PTPRD_uc003zkq.2_Missense_Mutation_p.G1405R|PTPRD_uc003zkr.2_Missense_Mutation_p.G1396R|PTPRD_uc003zks.2_Missense_Mutation_p.G1405R|PTPRD_uc003zkl.2_Missense_Mutation_p.G1803R|PTPRD_uc003zkm.2_Missense_Mutation_p.G1799R|PTPRD_uc003zkn.2_Missense_Mutation_p.G1401R|PTPRD_uc003zko.2_Missense_Mutation_p.G1402R	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	1812	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 2.				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		TTTGGCACTCCTTGCTCTGGC	0.512										TSP Lung(15;0.13)			14	69					0	0	0.004007	0	0
PTPRD	5789	broad.mit.edu	37	9	8341167	8341167	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:8341167G>A	uc003zkk.2	-	40	5760	c.5049C>T	c.(5047-5049)TCC>TCT	p.S1683S	PTPRD_uc003zkp.2_Silent_p.S1277S|PTPRD_uc003zkq.2_Silent_p.S1276S|PTPRD_uc003zkr.2_Silent_p.S1267S|PTPRD_uc003zks.2_Silent_p.S1276S|PTPRD_uc003zkl.2_Silent_p.S1674S|PTPRD_uc003zkm.2_Silent_p.S1670S|PTPRD_uc003zkn.2_Silent_p.S1272S|PTPRD_uc003zko.2_Silent_p.S1273S	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	1683	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 2.				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		ATACCCTTGTGGATTCATATG	0.413										TSP Lung(15;0.13)			31	120					0	0	0.013726	0	0
PTPRD	5789	broad.mit.edu	37	9	8492952	8492952	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:8492952C>T	uc003zkk.2	-	26	3088	c.2377G>A	c.(2377-2379)GAA>AAA	p.E793K	PTPRD_uc003zkp.2_Intron|PTPRD_uc003zkq.2_Intron|PTPRD_uc003zkr.2_Intron|PTPRD_uc003zks.2_Intron|PTPRD_uc003zkl.2_Missense_Mutation_p.E784K|PTPRD_uc003zkm.2_Missense_Mutation_p.E780K|PTPRD_uc003zkn.2_Intron|PTPRD_uc003zko.2_Intron	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	793	Fibronectin type-III 5.|Extracellular (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		TAGGAAGTTTCAGGCTGGAGC	0.488										TSP Lung(15;0.13)			18	78					0	0	0.010504	0	0
PTPRD	5789	broad.mit.edu	37	9	8500885	8500885	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:8500885G>A	uc003zkk.2	-	23	2708	c.1997C>T	c.(1996-1998)CCT>CTT	p.P666L	PTPRD_uc003zkp.2_Intron|PTPRD_uc003zkq.2_Intron|PTPRD_uc003zkr.2_Intron|PTPRD_uc003zks.2_Intron|PTPRD_uc003zkl.2_Missense_Mutation_p.P666L|PTPRD_uc003zkm.2_Missense_Mutation_p.P653L|PTPRD_uc003zkn.2_Intron|PTPRD_uc003zko.2_Intron	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	666	Fibronectin type-III 4.|Extracellular (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		AGTGTCCGAAGGAATTCCCAA	0.483										TSP Lung(15;0.13)			23	109					0	0	0.003330	0	0
PTPRD	5789	broad.mit.edu	37	9	8517893	8517893	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:8517893C>T	uc003zkk.2	-	20	2209	c.1498G>A	c.(1498-1500)GAT>AAT	p.D500N	PTPRD_uc003zkp.2_Missense_Mutation_p.D500N|PTPRD_uc003zkq.2_Missense_Mutation_p.D500N|PTPRD_uc003zkr.2_Missense_Mutation_p.D494N|PTPRD_uc003zks.2_Missense_Mutation_p.D490N|PTPRD_uc003zkl.2_Missense_Mutation_p.D500N|PTPRD_uc003zkm.2_Missense_Mutation_p.D487N|PTPRD_uc003zkn.2_Missense_Mutation_p.D500N|PTPRD_uc003zko.2_Missense_Mutation_p.D497N	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	500	Fibronectin type-III 2.|Extracellular (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		AGGGGACCATCTCCAATTGAG	0.463										TSP Lung(15;0.13)			13	26					0	0	0.013537	0	0
TYRP1	7306	broad.mit.edu	37	9	12695730	12695730	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:12695730C>T	uc003zkv.3	+	3	779	c.601C>T	c.(601-603)CTT>TTT	p.L201F		NM_000550	NP_000541	P17643	TYRP1_HUMAN	tyrosinase-related protein 1 precursor	201	Lumenal, melanosome (Potential).				melanin biosynthetic process	clathrin-coated endocytic vesicle membrane|endosome membrane|integral to membrane|melanosome membrane	copper ion binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, another compound as one donor, and incorporation of one atom of oxygen|protein heterodimerization activity|protein homodimerization activity			lung(1)	1		all_cancers(3;3.1e-05)|all_lung(3;1.7e-06)|Lung NSC(3;2.09e-06)|all_epithelial(3;0.000695)|all_hematologic(3;0.0033)|Acute lymphoblastic leukemia(23;0.0744)		GBM - Glioblastoma multiforme(50;9.85e-06)		AAAGACTTTCCTTGGGGTAGG	0.448									Oculocutaneous_Albinism				8	54					0	0	0.003080	0	0
C9orf150	286343	broad.mit.edu	37	9	12821462	12821462	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:12821462G>A	uc003zkw.2	+	2	1093	c.390G>A	c.(388-390)TGG>TGA	p.W130*		NM_203403	NP_981948	Q8IV03	CI150_HUMAN	hypothetical protein LOC286343	133											0				GBM - Glioblastoma multiforme(1;1.64e-13)		CCATCAAGTGGATGATCGAAG	0.512													24	40					0	0	0.002780	0	0
ZDHHC21	340481	broad.mit.edu	37	9	14618989	14618989	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:14618989G>A	uc003zli.2	-	10	1243	c.773C>T	c.(772-774)CCC>CTC	p.P258L	ZDHHC21_uc003zlg.1_Intron	NM_178566	NP_848661	Q8IVQ6	ZDH21_HUMAN	zinc finger, DHHC-type containing 21	258					nitric oxide metabolic process|regulation of nitric-oxide synthase activity	Golgi membrane|integral to membrane	palmitoyltransferase activity|zinc ion binding				0				GBM - Glioblastoma multiforme(50;4.31e-06)		AAAGTGGTAGGGAACTCGCAG	0.488													21	23					0	0	0.003330	0	0
FREM1	158326	broad.mit.edu	37	9	14746467	14746467	+	Splice_Site	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:14746467C>T	uc003zlm.2	-	35	6729	c.6139_splice	c.e35-1	p.D2047_splice	FREM1_uc010mic.2_Splice_Site|FREM1_uc003zlk.2_RNA|FREM1_uc003zll.2_Splice_Site_p.D583_splice	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor						cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		CTTCCACATCCTGAAAAACAG	0.483													11	76					0	0	0.013537	0	0
FREM1	158326	broad.mit.edu	37	9	14759820	14759820	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:14759820C>T	uc003zlm.2	-	28	5874	c.5284G>A	c.(5284-5286)GAA>AAA	p.E1762K	FREM1_uc010mic.2_Intron|FREM1_uc003zlk.2_RNA|FREM1_uc003zll.2_Missense_Mutation_p.E298K	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	1762	Calx-beta.				cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		CTGATAATTTCCAAGGGCAAC	0.388													27	51					0	0	0.006320	0	0
FREM1	158326	broad.mit.edu	37	9	14789061	14789061	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:14789061C>T	uc003zlm.2	-	23	4623	c.4033G>A	c.(4033-4035)GAA>AAA	p.E1345K	FREM1_uc010mic.2_Intron	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	1345	CSPG 9.				cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		AGATCCACTTCCTCCTGAGTG	0.507													6	4					0	0	0.001168	0	0
FREM1	158326	broad.mit.edu	37	9	14801703	14801703	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:14801703G>A	uc003zlm.2	-	20	4231	c.3641C>T	c.(3640-3642)CCT>CTT	p.P1214L	FREM1_uc010mic.2_RNA	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	1214	CSPG 8.				cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		TTTCTGGTGAGGGTTGGCTGG	0.468													18	17					0	0	0.006122	0	0
FREM1	158326	broad.mit.edu	37	9	14819263	14819263	+	Missense_Mutation	SNP	A	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:14819263A>T	uc003zlm.2	-	14	3105	c.2515T>A	c.(2515-2517)TCT>ACT	p.S839T	FREM1_uc010mic.2_RNA	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	839	CSPG 5.				cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		TCGCCCCAAGAAAATGTGCCC	0.428													10	23					0	0	0.010729	0	0
FREM1	158326	broad.mit.edu	37	9	14841568	14841568	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:14841568G>A	uc003zlm.2	-	10	2348	c.1758C>T	c.(1756-1758)TTC>TTT	p.F586F	FREM1_uc010mic.2_RNA	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	586	CSPG 3.				cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		CCCTCTGAAGGAAGCCATGGA	0.378													25	86					0	0	0.012213	0	0
FREM1	158326	broad.mit.edu	37	9	14842657	14842657	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:14842657C>T	uc003zlm.2	-	9	1985	c.1395G>A	c.(1393-1395)GGG>GGA	p.G465G	FREM1_uc010mic.2_RNA	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	465	CSPG 2.				cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		ACCCTTTCCCCCCTGAGGGAG	0.537													24	28					0	0	0.002780	0	0
FREM1	158326	broad.mit.edu	37	9	14863874	14863874	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:14863874C>T	uc003zlm.2	-	3	852	c.262G>A	c.(262-264)GAA>AAA	p.E88K	FREM1_uc010mic.2_RNA	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	88					cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		TACTTGACTTCGTTGGGAAGG	0.413													11	14					0	0	0.001855	0	0
ADAMTSL1	92949	broad.mit.edu	37	9	18504852	18504852	+	Missense_Mutation	SNP	A	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:18504852A>C	uc003zne.3	+	2	216	c.89A>C	c.(88-90)GAG>GCG	p.E30A	ADAMTSL1_uc003znb.2_Missense_Mutation_p.E30A|ADAMTSL1_uc003znc.3_Missense_Mutation_p.E30A	NM_001040272	NP_001035362	Q8N6G6	ATL1_HUMAN	ADAMTS-like 1 isoform 4 precursor	30						proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)|lung(1)	5				GBM - Glioblastoma multiforme(50;1.29e-17)		CGCTCCGAGGAGGACCGGGAC	0.587													22	35					0	0	0.003330	0	0
HAUS6	54801	broad.mit.edu	37	9	19058421	19058421	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:19058421C>T	uc003znk.2	-	16	2597	c.2344G>A	c.(2344-2346)GAA>AAA	p.E782K	HAUS6_uc011lmz.1_Missense_Mutation_p.E502K|HAUS6_uc003znl.1_Missense_Mutation_p.E646K	NM_017645	NP_060115	Q7Z4H7	HAUS6_HUMAN	HAUS augmin-like complex, subunit 6	782					cell division|centrosome organization|mitosis|spindle assembly	centrosome|HAUS complex|microtubule|nucleus|spindle				ovary(2)	2						CCAACTTCTTCCGGGAGAGTT	0.348													4	33					0	0	0.000602	0	0
ACER2	340485	broad.mit.edu	37	9	19423880	19423880	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:19423880C>T	uc003zny.1	+	2	287	c.129C>T	c.(127-129)TTC>TTT	p.F43F	ACER2_uc003znx.1_RNA|ACER2_uc003znz.1_5'UTR	NM_001010887	NP_001010887	Q5QJU3	ACER2_HUMAN	alkaline ceramidase 2	43	Helical; (Potential).				ceramide metabolic process|negative regulation of cell adhesion mediated by integrin|negative regulation of cell-matrix adhesion|negative regulation of protein glycosylation in Golgi|positive regulation of cell proliferation|response to retinoic acid|sphingosine biosynthetic process	integral to Golgi membrane	ceramidase activity			haematopoietic_and_lymphoid_tissue(1)|skin(1)	2						TCTTATTTTTCATTTTACCGC	0.373													28	36					0	0	0.006320	0	0
SLC24A2	25769	broad.mit.edu	37	9	19786487	19786487	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:19786487G>A	uc003zoa.1	-	1	440	c.378C>T	c.(376-378)TCC>TCT	p.S126S	SLC24A2_uc003zob.1_Silent_p.S126S	NM_020344	NP_065077	Q9UI40	NCKX2_HUMAN	solute carrier family 24	126	Extracellular (Potential).				visual perception	integral to membrane|plasma membrane	calcium, potassium:sodium antiporter activity|symporter activity			ovary(3)	3				GBM - Glioblastoma multiforme(1;1.67e-55)|Lung(42;0.0443)		TCTCCTCAAGGGAAAAGATGT	0.438													43	51					0	0	0.009718	0	0
PTPLAD2	401494	broad.mit.edu	37	9	21029392	21029392	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:21029392C>T	uc010miq.1	-	2	90	c.44G>A	c.(43-45)AGG>AAG	p.R15K	PTPLAD2_uc003zoj.1_5'UTR|PTPLAD2_uc010mir.1_Missense_Mutation_p.R15K	NM_001010915	NP_001010915	Q5VWC8	HACD4_HUMAN	protein tyrosine phosphatase-like A domain	15	Cytoplasmic (Potential).				fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	lyase activity			skin(1)	1				Lung(24;6.02e-14)|LUSC - Lung squamous cell carcinoma(38;1.29e-10)		CGCATTCTTCCTATACCTATA	0.338													17	87					0	0	0.007413	0	0
IFNA21	3452	broad.mit.edu	37	9	21166283	21166283	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:21166283G>A	uc003zom.2	-	1	377	c.329C>T	c.(328-330)ACT>ATT	p.T110I		NM_002175	NP_002166	P01568	IFN21_HUMAN	interferon, alpha 21 precursor	110					blood coagulation|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|cytokine receptor binding			central_nervous_system(1)|skin(1)	2				GBM - Glioblastoma multiforme(5;1.93e-187)|Lung(24;2.12e-22)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)		GTTAAGTTCAGTGGAAAATTT	0.498													15	94					0	0	0.002450	0	0
IFNA14	3448	broad.mit.edu	37	9	21239548	21239548	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:21239548C>T	uc010mis.2	-	1	431	c.387G>A	c.(385-387)GTG>GTA	p.V129V	IFNA14_uc003zoo.1_RNA	NM_002172	NP_002163	P01570	IFN14_HUMAN	interferon, alpha 14 precursor	129					blood coagulation|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|cytokine receptor binding				0				Lung(24;2.12e-22)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)		GAGTCTCTTCCACCCCAACCT	0.453													43	144					0	0	0.014410	0	0
IFNA14	3448	broad.mit.edu	37	9	21239574	21239574	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:21239574C>T	uc010mis.2	-	1	405	c.361G>A	c.(361-363)GCC>ACC	p.A121T	IFNA14_uc003zoo.1_RNA	NM_002172	NP_002163	P01570	IFN14_HUMAN	interferon, alpha 14 precursor	121					blood coagulation|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|cytokine receptor binding				0				Lung(24;2.12e-22)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)		ATCACACAGGCTTCCAGGTCA	0.443													68	97					0	0	0.014410	0	0
IFNA2	3440	broad.mit.edu	37	9	21384864	21384864	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:21384864C>T	uc003zpb.2	-	1	533	c.465G>A	c.(463-465)GAG>GAA	p.E155E		NM_000605	NP_000596	P01563	IFNA2_HUMAN	interferon, alpha 2 precursor	155					blood coagulation|cell-cell signaling|induction of apoptosis|inflammatory response|negative regulation of interleukin-13 secretion|negative regulation of interleukin-5 secretion|negative regulation of T cell differentiation|negative regulation of T-helper 2 cell cytokine production|negative regulation of transcription, DNA-dependent|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|interferon-alpha/beta receptor binding			breast(1)	1				Lung(24;7.66e-27)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)|OV - Ovarian serous cystadenocarcinoma(39;0.0173)	Interferon Alfa-2a, Recombinant(DB00034)|Interferon Alfa-2b, Recombinant(DB00105)|Interferon alfa-n1(DB00011)|Peginterferon alfa-2a(DB00008)|Peginterferon alfa-2b(DB00022)	TGTATTTCTTCTCTTTCAGAT	0.438													32	161					0	0	0.013726	0	0
IFNE	338376	broad.mit.edu	37	9	21481607	21481607	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:21481607G>A	uc003zpg.2	-	1	706	c.87C>T	c.(85-87)TTC>TTT	p.F29F	LOC554202_uc003zpe.2_Intron|LOC554202_uc003zpf.2_Intron	NM_176891	NP_795372	Q86WN2	IFNE_HUMAN	interferon, epsilon precursor	29					defense response|response to virus	extracellular space	cytokine activity|cytokine receptor binding				0						GTCTTTGCTGGAAGATAATCA	0.388													7	36					0	0	0.003080	0	0
ELAVL2	1993	broad.mit.edu	37	9	23704986	23704986	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:23704986C>T	uc003zpu.2	-	4	692	c.417G>A	c.(415-417)AAG>AAA	p.K139K	ELAVL2_uc003zps.2_Silent_p.K139K|ELAVL2_uc003zpt.2_Silent_p.K139K|ELAVL2_uc003zpv.2_Silent_p.K139K|ELAVL2_uc003zpw.2_Silent_p.K139K	NM_004432	NP_004423	Q12926	ELAV2_HUMAN	ELAV (embryonic lethal, abnormal vision,	139	RRM 2.				regulation of transcription, DNA-dependent		mRNA 3'-UTR binding|nucleotide binding|protein binding			ovary(2)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(1;2.18e-156)|Lung(42;2.15e-28)|LUSC - Lung squamous cell carcinoma(38;1.02e-19)		GTTCCAACTCCTTCTGGGTCA	0.423													31	55					0	0	0.008361	0	0
PLAA	9373	broad.mit.edu	37	9	26926415	26926415	+	Missense_Mutation	SNP	T	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:26926415T>A	uc003zqd.2	-	5	1134	c.709A>T	c.(709-711)ATA>TTA	p.I237L	PLAA_uc003zqe.2_Missense_Mutation_p.I237L	NM_001031689	NP_001026859	Q9Y263	PLAP_HUMAN	phospholipase A2-activating protein	237	WD 6.				phospholipid metabolic process|signal transduction		phospholipase A2 activator activity				0		all_neural(3;3.53e-10)|Glioma(3;2.71e-09)		Lung(218;1.32e-05)|LUSC - Lung squamous cell carcinoma(38;0.00011)		AAAACGGATATGCTATAAATA	0.328													19	59					0	0	0.010504	0	0
LINGO2	158038	broad.mit.edu	37	9	27949575	27949575	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:27949575C>T	uc003zqu.1	-	2	1289	c.1095G>A	c.(1093-1095)TGG>TGA	p.W365*	LINGO2_uc010mjf.1_Nonsense_Mutation_p.W365*|LINGO2_uc003zqv.1_Nonsense_Mutation_p.W365*	NM_152570	NP_689783	Q7L985	LIGO2_HUMAN	leucine rich repeat and Ig domain containing 2	365	LRRCT.|Extracellular (Potential).					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3	Melanoma(11;0.242)	all_neural(11;2.78e-09)		UCEC - Uterine corpus endometrioid carcinoma (5;0.0818)|GBM - Glioblastoma multiforme(2;1.31e-34)|all cancers(2;2.37e-25)|Lung(2;7.48e-08)|LUSC - Lung squamous cell carcinoma(38;5.09e-07)|KIRC - Kidney renal clear cell carcinoma(2;0.0465)|Kidney(2;0.0604)		GCTGCAAGATCCAGAGAAGGC	0.542													6	17					0	0	0.001168	0	0
MIR873	100126316	broad.mit.edu	37	9	28888890	28888890	+	RNA	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:28888890C>T	hsa-mir-873|MI0005564	-			c.64C>T																				0						TGGGTGTTCCCGGGAACTCAT	0.428													5	24					0	0	0.000602	0	0
DDX58	23586	broad.mit.edu	37	9	32477025	32477025	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:32477025C>T	uc003zra.2	-	13	2037	c.1879G>A	c.(1879-1881)GAG>AAG	p.E627K	DDX58_uc010mjj.2_RNA|DDX58_uc010mjk.1_Missense_Mutation_p.E582K|DDX58_uc011lnr.1_Missense_Mutation_p.E424K|DDX58_uc010mji.2_Missense_Mutation_p.E556K	NM_014314	NP_055129	O95786	DDX58_HUMAN	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide	627	Helicase C-terminal.				detection of virus|innate immune response|negative regulation of type I interferon production|positive regulation of defense response to virus by host|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|positive regulation of transcription factor import into nucleus|positive regulation of transcription from RNA polymerase II promoter	cytosol	ATP binding|ATP-dependent helicase activity|double-stranded RNA binding|protein binding|zinc ion binding			ovary(2)|liver(1)|pancreas(1)	4			LUSC - Lung squamous cell carcinoma(29;0.00813)	GBM - Glioblastoma multiforme(74;0.00056)		GTTATTGTCTCTGGGTTTAAG	0.313													12	45					0	0	0.010729	0	0
TOPORS	10210	broad.mit.edu	37	9	32541428	32541428	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:32541428G>A	uc003zrb.2	-	3	3262	c.3095C>T	c.(3094-3096)TCA>TTA	p.S1032L	TOPORS_uc003zrc.2_Missense_Mutation_p.S965L	NM_005802	NP_005793	Q9NS56	TOPRS_HUMAN	topoisomerase I binding, arginine/serine-rich	1032					DNA damage response, signal transduction resulting in induction of apoptosis|maintenance of protein location in nucleus|proteasomal ubiquitin-dependent protein catabolic process|protein sumoylation|transcription, DNA-dependent	nuclear speck|PML body	antigen binding|DNA binding|DNA topoisomerase I binding|SUMO ligase activity|ubiquitin-protein ligase activity|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)|skin(1)	5			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.0018)		TGACATTAATGATGTCCGTGG	0.388													4	39					0	0	0.000602	0	0
TOPORS	10210	broad.mit.edu	37	9	32543665	32543665	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:32543665G>A	uc003zrb.2	-	3	1025	c.858C>T	c.(856-858)TTC>TTT	p.F286F	TOPORS_uc003zrc.2_Silent_p.F219F	NM_005802	NP_005793	Q9NS56	TOPRS_HUMAN	topoisomerase I binding, arginine/serine-rich	286	Required for DNA-binding.				DNA damage response, signal transduction resulting in induction of apoptosis|maintenance of protein location in nucleus|proteasomal ubiquitin-dependent protein catabolic process|protein sumoylation|transcription, DNA-dependent	nuclear speck|PML body	antigen binding|DNA binding|DNA topoisomerase I binding|SUMO ligase activity|ubiquitin-protein ligase activity|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)|skin(1)	5			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.0018)		GATTTCTACGGAAAAATTCAG	0.393													10	33					0	0	0.006214	0	0
TAF1L	138474	broad.mit.edu	37	9	32630258	32630258	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:32630258C>T	uc003zrg.1	-	1	5410	c.5320G>A	c.(5320-5322)GAA>AAA	p.E1774K		NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	1774					male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		CCAGCATCTTCCTCATCATCT	0.453													22	67					0	0	0.002780	0	0
TAF1L	138474	broad.mit.edu	37	9	32630383	32630383	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:32630383G>A	uc003zrg.1	-	1	5285	c.5195C>T	c.(5194-5196)CCT>CTT	p.P1732L		NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	1732					male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		TGGAGGCTTAGGTTTCCCATC	0.507													59	75					0	0	0.014410	0	0
TAF1L	138474	broad.mit.edu	37	9	32631765	32631765	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:32631765C>T	uc003zrg.1	-	1	3903	c.3813G>A	c.(3811-3813)AAG>AAA	p.K1271K	uc003zrh.1_5'Flank	NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	1271					male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		CTTTCATTTTCTTGGGCTTCT	0.478													16	59					0	0	0.004007	0	0
TAF1L	138474	broad.mit.edu	37	9	32631806	32631806	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:32631806C>T	uc003zrg.1	-	1	3862	c.3772G>A	c.(3772-3774)GAA>AAA	p.E1258K	uc003zrh.1_5'Flank	NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	1258					male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		TTCTCCTTTTCCTGGTTCCGC	0.473													10	45					0	0	0.006214	0	0
TAF1L	138474	broad.mit.edu	37	9	32635017	32635017	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:32635017G>A	uc003zrg.1	-	1	651	c.561C>T	c.(559-561)CCC>CCT	p.P187P	uc003zrh.1_RNA	NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	187					male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		CAATGATGGAGGGCAAGATGA	0.493													9	39					0	0	0.004482	0	0
TMEM215	401498	broad.mit.edu	37	9	32784491	32784491	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:32784491G>A	uc003zri.3	+	2	675	c.310G>A	c.(310-312)GGC>AGC	p.G104S		NM_212558	NP_997723	Q68D42	TM215_HUMAN	transmembrane protein 215	104						integral to membrane					0						CCTAGAATCCGGCAAGGGGAG	0.602													17	34					0	0	0.006122	0	0
SMU1	55234	broad.mit.edu	37	9	33062142	33062142	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:33062142G>A	uc003zsf.1	-	5	643	c.535C>T	c.(535-537)CCT>TCT	p.P179S	SMU1_uc010mjo.1_Missense_Mutation_p.P179S|SMU1_uc010mjp.1_Missense_Mutation_p.P179S|SMU1_uc011lnu.1_Missense_Mutation_p.P18S	NM_018225	NP_060695	Q2TAY7	SMU1_HUMAN	smu-1 suppressor of mec-8 and unc-52 homolog	179						cytoplasm|nucleus				ovary(1)	1			LUSC - Lung squamous cell carcinoma(29;0.0227)	GBM - Glioblastoma multiforme(74;0.11)		ATACCAGGAGGAAGCAATCCC	0.428													20	37					0	0	0.008871	0	0
B4GALT1	2683	broad.mit.edu	37	9	33120558	33120558	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:33120558A>G	uc003zsg.2	-	3	884	c.695T>C	c.(694-696)TTT>TCT	p.F232S		NM_001497	NP_001488	P15291	B4GT1_HUMAN	UDP-Gal:betaGlcNAc beta 1,4-	232	Lumenal (Potential).				oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	basolateral plasma membrane|brush border membrane|desmosome|external side of plasma membrane|extracellular region|glycocalyx|Golgi cisterna membrane|Golgi trans cisterna|integral to membrane	alpha-tubulin binding|beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity|beta-tubulin binding|lactose synthase activity|metal ion binding|N-acetyllactosamine synthase activity|protein binding|protein homodimerization activity				0			LUSC - Lung squamous cell carcinoma(29;0.0084)	GBM - Glioblastoma multiforme(74;0.121)	N-Acetyl-D-glucosamine(DB00141)	GGCTTCTTGAAAGCCAACATT	0.433													19	26					0	0	0.010504	0	0
SPINK4	27290	broad.mit.edu	37	9	33240224	33240224	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:33240224G>A	uc003zsh.2	+	1	29	c.18G>A	c.(16-18)TGG>TGA	p.W6*	SUGT1P1_uc010mjq.1_Intron	NM_014471	NP_055286	O60575	ISK4_HUMAN	serine peptidase inhibitor, Kazal type 4	6						extracellular region	serine-type endopeptidase inhibitor activity				0			LUSC - Lung squamous cell carcinoma(29;0.00506)			TCCGCCAGTGGGTAATCGCCC	0.607													3	7					0	0	0.009096	0	0
NFX1	4799	broad.mit.edu	37	9	33352709	33352709	+	Silent	SNP	T	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:33352709T>C	uc003zsq.2	+	17	2782	c.2721T>C	c.(2719-2721)ACT>ACC	p.T907T	SUGT1P1_uc010mjq.1_Intron|NFX1_uc003zsp.1_Silent_p.T907T|NFX1_uc010mjr.1_Silent_p.T908T|NFX1_uc003zsr.2_Silent_p.T908T	NM_002504	NP_002495	Q12986	NFX1_HUMAN	nuclear transcription factor, X-box binding 1	907					inflammatory response|interspecies interaction between organisms|negative regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	DNA binding|ligase activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1			LUSC - Lung squamous cell carcinoma(29;0.00506)	GBM - Glioblastoma multiforme(74;0.224)		CATCTAGTACTTATCAAAGGT	0.333													9	33					0	0	0.008291	0	0
PTENP1	11191	broad.mit.edu	37	9	33676283	33676283	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:33676283G>A	uc003zth.3	-	1	1136	c.265C>T	c.(265-267)CAC>TAC	p.H89Y		NR_023917				SubName: Full=Phosphatase and tensin homolog 2; Flags: Fragment;												0						GCTTTACAGTGAATTGCTGCA	0.388													12	46					0	0	0.006122	0	0
C9orf24	84688	broad.mit.edu	37	9	34397524	34397524	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:34397524G>A	uc003zuh.1	-	1	326	c.108C>T	c.(106-108)GCC>GCT	p.A36A		NM_032596	NP_115985	Q8NCR6	CI024_HUMAN	testes development-related NYD-SP22 isoform 1	36										ovary(1)	1			LUSC - Lung squamous cell carcinoma(29;0.0107)	GBM - Glioblastoma multiforme(74;0.123)		TGGCTTCCCAGGCACACAGGG	0.557													10	77					0	0	0.008291	0	0
C9orf23	138716	broad.mit.edu	37	9	34611258	34611258	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:34611258G>A	uc003zuu.2	-	2	317	c.36C>T	c.(34-36)CTC>CTT	p.L12L	C9orf23_uc003zuv.2_Silent_p.L12L	NM_148179	NP_680545	Q8N5L8	CI023_HUMAN	hypothetical protein LOC138716	12							nucleic acid binding				0	all_epithelial(49;0.0863)		STAD - Stomach adenocarcinoma(86;0.178)	GBM - Glioblastoma multiforme(74;0.0385)		AAGGCGCTGGGAGCTCTACAG	0.582													7	22					0	0	0.004482	0	0
DCTN3	11258	broad.mit.edu	37	9	34618712	34618712	+	Missense_Mutation	SNP	A	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:34618712A>C	uc003zux.1	-	2	177	c.142T>G	c.(142-144)TCC>GCC	p.S48A	DCTN3_uc003zuw.1_Missense_Mutation_p.S48A	NM_007234	NP_009165	O75935	DCTN3_HUMAN	dynactin 3 isoform 1	48					cytokinesis|G2/M transition of mitotic cell cycle|mitosis	centrosome|cleavage furrow|condensed chromosome kinetochore|cytosol|dynactin complex|midbody|perinuclear region of cytoplasm|spindle	protein binding|structural molecule activity				0	all_epithelial(49;0.0863)		STAD - Stomach adenocarcinoma(86;0.178)	GBM - Glioblastoma multiforme(74;0.0388)		CTCTTGCTGGAAATGTTCCCC	0.527													14	30					0	0	0.004990	0	0
CCL21	6366	broad.mit.edu	37	9	34709522	34709522	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:34709522C>T	uc003zvo.2	-	3	430	c.346G>A	c.(346-348)GGA>AGA	p.G116R		NM_002989	NP_002980	O00585	CCL21_HUMAN	small inducible cytokine A21 precursor	116	C-terminal basic extension.				activation of Rho GTPase activity|cell maturation|cell-cell signaling|dendritic cell chemotaxis|dendritic cell dendrite assembly|establishment of T cell polarity|immune response|immunological synapse formation|inflammatory response|mesangial cell-matrix adhesion|negative regulation of leukocyte apoptosis|positive regulation of actin filament polymerization|positive regulation of cell adhesion mediated by integrin|positive regulation of cell-matrix adhesion|positive regulation of dendritic cell antigen processing and presentation|positive regulation of ERK1 and ERK2 cascade|positive regulation of filopodium assembly|positive regulation of glycoprotein biosynthetic process|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of JNK cascade|positive regulation of myeloid dendritic cell chemotaxis|positive regulation of neutrophil chemotaxis|positive regulation of phosphatidylinositol 3-kinase activity|positive regulation of protein kinase activity|positive regulation of protein kinase B signaling cascade|positive regulation of pseudopodium assembly|positive regulation of receptor-mediated endocytosis|release of sequestered calcium ion into cytosol|response to prostaglandin E stimulus|ruffle organization|T cell costimulation	extracellular space	CCR7 chemokine receptor binding|chemokine activity				0	all_epithelial(49;0.0899)		STAD - Stomach adenocarcinoma(86;0.178)	GBM - Glioblastoma multiforme(74;0.173)		GAGCCCTTTCCTTTCTTGCCA	0.597													29	42					0	0	0.003755	0	0
CA9	768	broad.mit.edu	37	9	35680762	35680762	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:35680762C>T	uc003zxo.3	+	10	1292	c.1250C>T	c.(1249-1251)GCC>GTC	p.A417V	CA9_uc003zxp.3_Missense_Mutation_p.A408V	NM_001216	NP_001207	Q16790	CAH9_HUMAN	carbonic anhydrase IX precursor	417	Helical; (Potential).				one-carbon metabolic process	integral to membrane|microvillus membrane|nucleolus	carbonate dehydratase activity|zinc ion binding			ovary(4)|skin(1)	5	all_epithelial(49;0.217)		Lung(28;0.00276)|LUSC - Lung squamous cell carcinoma(32;0.00418)|STAD - Stomach adenocarcinoma(86;0.194)			GACATCCTAGCCCTGGTTTTT	0.557													9	40					0	0	0.004482	0	0
TLN1	7094	broad.mit.edu	37	9	35710878	35710878	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:35710878G>A	uc003zxt.2	-	32	4473	c.4119C>T	c.(4117-4119)GTC>GTT	p.V1373V		NM_006289	NP_006280	Q9Y490	TLN1_HUMAN	talin 1	1373	Interaction with SYNM.				axon guidance|cell adhesion|cell-cell junction assembly|cellular component movement|cytoskeletal anchoring at plasma membrane|muscle contraction|platelet activation|platelet degranulation	actin cytoskeleton|centrosome|cytosol|extracellular region|focal adhesion|intracellular membrane-bounded organelle|ruffle membrane	actin binding|insulin receptor binding|LIM domain binding|structural constituent of cytoskeleton|vinculin binding			lung(7)|breast(3)|ovary(2)|central_nervous_system(1)	13	all_epithelial(49;0.167)		Lung(28;0.00276)|LUSC - Lung squamous cell carcinoma(32;0.00418)|STAD - Stomach adenocarcinoma(86;0.194)			GGAGTTCCCGGACCGTCTGTG	0.547													24	55					0	0	0.003954	0	0
NPR2	4882	broad.mit.edu	37	9	35792814	35792814	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:35792814C>T	uc003zyd.2	+	1	409	c.409C>T	c.(409-411)CGT>TGT	p.R137C	NPR2_uc010mlb.2_Missense_Mutation_p.R137C	NM_003995	NP_003986	P20594	ANPRB_HUMAN	natriuretic peptide receptor B precursor	137	Extracellular (Potential).				intracellular signal transduction|ossification|receptor guanylyl cyclase signaling pathway|regulation of blood pressure	integral to membrane|plasma membrane	GTP binding|guanylate cyclase activity|natriuretic peptide receptor activity|protein kinase activity|transmembrane receptor activity			ovary(2)|stomach(1)	3	all_epithelial(49;0.161)		LUSC - Lung squamous cell carcinoma(32;0.00521)|Lung(28;0.00697)|STAD - Stomach adenocarcinoma(86;0.194)		Erythrityl Tetranitrate(DB01613)|Nesiritide(DB04899)	TGACCATTATCGTACCCTGGT	0.602													6	58					0	0	0.003080	0	0
RECK	8434	broad.mit.edu	37	9	36108051	36108051	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:36108051T>C	uc003zyv.2	+	14	1741	c.1655T>C	c.(1654-1656)GTT>GCT	p.V552A	RECK_uc003zyw.2_Missense_Mutation_p.V424A|RECK_uc003zyx.2_RNA	NM_021111	NP_066934	O95980	RECK_HUMAN	RECK protein precursor	552						anchored to membrane|peripheral to membrane of membrane fraction|plasma membrane	metalloendopeptidase inhibitor activity|serine-type endopeptidase inhibitor activity			skin(2)|ovary(1)	3			LUSC - Lung squamous cell carcinoma(32;0.112)|STAD - Stomach adenocarcinoma(86;0.228)			GCAGGGGAAGTTGGTTGTTAT	0.423													10	48					0	0	0.010729	0	0
ZCCHC7	84186	broad.mit.edu	37	9	37126523	37126523	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:37126523C>T	uc003zzq.2	+	2	367	c.194C>T	c.(193-195)TCG>TTG	p.S65L	ZCCHC7_uc011lqh.1_Intron|ZCCHC7_uc011lqi.1_Missense_Mutation_p.S64L|ZCCHC7_uc010mlt.2_Missense_Mutation_p.S64L|ZCCHC7_uc003zzs.1_Missense_Mutation_p.S64L	NM_032226	NP_115602	Q8N3Z6	ZCHC7_HUMAN	zinc finger, CCHC domain containing 7	65				S -> P (in Ref. 4; AAH22434).			nucleic acid binding|zinc ion binding	p.S65S(1)		ovary(1)|central_nervous_system(1)|skin(1)	3				GBM - Glioblastoma multiforme(29;0.0137)		TCGGAATCTTCGAGTAGTAAA	0.418													20	69					0	0	0.010504	0	0
FBXO10	26267	broad.mit.edu	37	9	37515999	37515999	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:37515999G>A	uc004aab.2	-	10	2647	c.2598C>T	c.(2596-2598)ATC>ATT	p.I866I	FBXO10_uc004aac.2_Silent_p.I882I|FBXO10_uc004aad.2_Silent_p.I416I	NM_012166	NP_036298	Q9UK96	FBX10_HUMAN	F-box protein 10	866						ubiquitin ligase complex	ubiquitin-protein ligase activity			lung(5)	5				GBM - Glioblastoma multiforme(29;0.0107)		CCTGGAAGATGATGTTTTCCT	0.522													41	46					0	0	0.006230	0	0
FRMPD1	22844	broad.mit.edu	37	9	37692689	37692689	+	Silent	SNP	A	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:37692689A>C	uc004aag.1	+	2	95	c.51A>C	c.(49-51)ATA>ATC	p.I17I	FRMPD1_uc004aah.1_Silent_p.I17I	NM_014907	NP_055722	Q5SYB0	FRPD1_HUMAN	FERM and PDZ domain containing 1	17						cytoskeleton|cytosol|plasma membrane				ovary(4)|central_nervous_system(2)|skin(2)|breast(1)	9				GBM - Glioblastoma multiforme(29;0.00655)		CACATAGAATAGAACAAATGG	0.473													26	59					0	0	0.004656	0	0
FRMPD1	22844	broad.mit.edu	37	9	37745262	37745262	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:37745262C>T	uc004aag.1	+	16	3277	c.3233C>T	c.(3232-3234)CCT>CTT	p.P1078L	FRMPD1_uc004aah.1_Missense_Mutation_p.P1078L	NM_014907	NP_055722	Q5SYB0	FRPD1_HUMAN	FERM and PDZ domain containing 1	1078						cytoskeleton|cytosol|plasma membrane				ovary(4)|central_nervous_system(2)|skin(2)|breast(1)	9				GBM - Glioblastoma multiforme(29;0.00655)		TTGTTGTCTCCTAGAGATGAG	0.428													15	60					0	0	0.004007	0	0
ALDH1B1	219	broad.mit.edu	37	9	38395964	38395964	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:38395964G>A	uc004aay.2	+	2	331	c.219G>A	c.(217-219)CGG>CGA	p.R73R		NM_000692	NP_000683	P30837	AL1B1_HUMAN	aldehyde dehydrogenase 1B1 precursor	73					carbohydrate metabolic process	mitochondrial matrix|nucleus	aldehyde dehydrogenase (NAD) activity			skin(1)	1				GBM - Glioblastoma multiforme(29;0.043)|Lung(182;0.115)	NADH(DB00157)	AAGGTGACCGGGCTGATGTGG	0.632													25	50					0	0	0.003330	0	0
IGFBPL1	347252	broad.mit.edu	37	9	38414197	38414197	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:38414197G>A	uc004aba.2	-	2	487	c.464C>T	c.(463-465)CCT>CTT	p.P155L		NM_001007563	NP_001007564	Q8WX77	IBPL1_HUMAN	insulin-like growth factor binding protein-like	155	Ig-like C2-type.				regulation of cell growth	extracellular region	insulin-like growth factor binding				0				GBM - Glioblastoma multiforme(29;0.0437)|Lung(182;0.116)		GACGACCACAGGAGCTAGGAG	0.617													9	40					0	0	0.006214	0	0
CNTNAP3	79937	broad.mit.edu	37	9	39103800	39103800	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:39103800G>A	uc004abi.2	-	16	2716	c.2477C>T	c.(2476-2478)TCC>TTC	p.S826F	CNTNAP3_uc004abj.2_Missense_Mutation_p.S825F|CNTNAP3_uc011lqr.1_RNA|CNTNAP3_uc004abk.1_Missense_Mutation_p.S826F	NM_033655	NP_387504	Q9BZ76	CNTP3_HUMAN	cell recognition molecule CASPR3 precursor	826	Extracellular (Potential).|Laminin G-like 3.				cell adhesion|cell recognition|signal transduction	extracellular region|integral to membrane|plasma membrane	receptor binding			ovary(1)	1				GBM - Glioblastoma multiforme(29;0.02)|Lung(182;0.0681)		CACCCCGGAGGAAACTGTGGT	0.478													8	26					0	0	0.010729	0	0
CNTNAP3	79937	broad.mit.edu	37	9	39109260	39109260	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:39109260G>A	uc004abi.2	-	15	2501	c.2262C>T	c.(2260-2262)TCC>TCT	p.S754S	CNTNAP3_uc004abj.2_Silent_p.S753S|CNTNAP3_uc011lqr.1_RNA|CNTNAP3_uc004abk.1_Silent_p.S754S	NM_033655	NP_387504	Q9BZ76	CNTP3_HUMAN	cell recognition molecule CASPR3 precursor	754	Fibrinogen C-terminal.|Extracellular (Potential).				cell adhesion|cell recognition|signal transduction	extracellular region|integral to membrane|plasma membrane	receptor binding			ovary(1)	1				GBM - Glioblastoma multiforme(29;0.02)|Lung(182;0.0681)		GCTCCTTTTGGGAAAGGACTA	0.463													4	16					0	0	0.009096	0	0
FAM75A3	727830	broad.mit.edu	37	9	40704191	40704191	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:40704191G>A	uc010mmj.2	+	4	1877	c.1848G>A	c.(1846-1848)AGG>AGA	p.R616R		NM_001083124	NP_001076593	Q5VYP0	F75A3_HUMAN	hypothetical protein LOC727830	616						integral to membrane				ovary(2)|skin(1)	3				GBM - Glioblastoma multiforme(29;0.02)|Lung(182;0.0681)		ACCTGGGAAGGATCCAAGAGT	0.532													23	86					0	0	0.003330	0	0
FAM74A3	728495	broad.mit.edu	37	9	40716146	40716146	+	RNA	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:40716146C>T	uc010mmk.2	+	1		c.623C>T				NR_026801				Homo sapiens family with sequence similarity 74, member A3 (FAM74A3), non-coding RNA.											skin(1)	1				GBM - Glioblastoma multiforme(29;0.02)|Lung(182;0.0681)		AGAGGCTGTCCCGGAGAAGAC	0.512													7	51					0	0	0.001984	0	0
FAM75A6	389730	broad.mit.edu	37	9	43625417	43625417	+	Silent	SNP	T	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:43625417T>C	uc011lrb.1	-	4	3299	c.3270A>G	c.(3268-3270)CAA>CAG	p.Q1090Q		NM_001145196	NP_001138668	Q5VVP1	F75A6_HUMAN	hypothetical protein LOC389730	1090						integral to membrane					0						TGCATGAGCCTTGACAGTTTG	0.502													78	157					0	0	0.014410	0	0
FAM75A6	389730	broad.mit.edu	37	9	43626641	43626641	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:43626641C>T	uc011lrb.1	-	4	2075	c.2046G>A	c.(2044-2046)ATG>ATA	p.M682I		NM_001145196	NP_001138668	Q5VVP1	F75A6_HUMAN	hypothetical protein LOC389730	682						integral to membrane					0						GGAAGCTTTTCATGTCCCTGG	0.517													35	62					0	0	0.014410	0	0
PGM5P2	595135	broad.mit.edu	37	9	69127060	69127060	+	RNA	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:69127060C>T	uc004aff.3	-	2		c.507G>A				NR_002836				Homo sapiens phosphoglucomutase 5 pseudogene 2, mRNA (cDNA clone IMAGE:4121651), with apparent retained intron.												0						CTGCCTTGATCTTCCTGATAA	0.438													8	20					0	0	0.006214	0	0
Unknown	0	broad.mit.edu	37	9	69440125	69440125	+	Missense_Mutation	SNP	A	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:69440125A>T	uc010mnx.1	+	3	378	c.209A>T	c.(208-210)AAA>ATA	p.K70I		NM_001098806	NP_001092276			coiled-coil domain containing 29																		TTATCTATGAAAAAAGTACAA	0.313													6	62					0	0	0.001168	0	0
PGM5	5239	broad.mit.edu	37	9	71002416	71002416	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:71002416C>T	uc004agr.2	+	4	838	c.609C>T	c.(607-609)CTC>CTT	p.L203L		NM_021965	NP_068800	Q15124	PGM5_HUMAN	phosphoglucomutase 5	203					cell adhesion|cellular calcium ion homeostasis|glucose metabolic process	costamere|dystrophin-associated glycoprotein complex|focal adhesion|intercalated disc|internal side of plasma membrane|sarcolemma|spot adherens junction|stress fiber|Z disc	intramolecular transferase activity, phosphotransferases|magnesium ion binding|structural molecule activity			ovary(1)|pancreas(1)	2						ATCTTAACCTCCTTCGGACCA	0.438													40	55					0	0	0.009718	0	0
C9orf71	169693	broad.mit.edu	37	9	71152396	71152396	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:71152396G>A	uc004agt.2	-	2	345	c.292C>T	c.(292-294)CCT>TCT	p.P98S	uc004ags.1_RNA	NM_153237	NP_694969	Q8N6L7	CI071_HUMAN	hypothetical protein LOC169693	98						integral to membrane					0						TAAGCTGGAGGGTAAAAGTCT	0.507													18	20					0	0	0.007413	0	0
PRKACG	5568	broad.mit.edu	37	9	71628844	71628844	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:71628844G>A	uc004agy.2	-	1	196	c.165C>T	c.(163-165)TTC>TTT	p.F55F		NM_002732	NP_002723	P22612	KAPCG_HUMAN	protein kinase, cAMP-dependent, catalytic,	55	Protein kinase.|ATP (By similarity).				activation of phospholipase C activity|activation of protein kinase A activity|blood coagulation|cellular response to glucagon stimulus|energy reserve metabolic process|gluconeogenesis|intracellular protein kinase cascade|male gonad development|nerve growth factor receptor signaling pathway|regulation of insulin secretion|spermatogenesis|transmembrane transport|triglyceride catabolic process|water transport	cytosol|nucleoplasm	ATP binding|cAMP-dependent protein kinase activity			ovary(1)|pancreas(1)|skin(1)	3						TCACCCGCCCGAAGGAGCCCA	0.592													10	52					0	0	0.008291	0	0
TJP2	9414	broad.mit.edu	37	9	71842716	71842716	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:71842716C>T	uc004ahe.2	+	8	1446	c.1246C>T	c.(1246-1248)CCA>TCA	p.P416S	TJP2_uc011lrs.1_Missense_Mutation_p.P393S|TJP2_uc011lrt.1_Missense_Mutation_p.P393S|TJP2_uc004ahd.2_Missense_Mutation_p.P416S|TJP2_uc004ahf.2_Missense_Mutation_p.P416S|TJP2_uc011lru.1_Missense_Mutation_p.P420S|TJP2_uc011lrv.1_Missense_Mutation_p.P438S	NM_004817	NP_004808	Q9UDY2	ZO2_HUMAN	tight junction protein 2 (zona occludens 2)	416					cellular component disassembly involved in apoptosis	adherens junction|cytoplasm|nucleus|tight junction	guanylate kinase activity|protein binding				0						ATCATTTTCTCCAGAGGAGAG	0.318													5	16					0	0	0.004482	0	0
TJP2	9414	broad.mit.edu	37	9	71845108	71845108	+	Missense_Mutation	SNP	C	G	G	rs142684074		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:71845108C>G	uc004ahe.2	+	11	1831	c.1631C>G	c.(1630-1632)GCG>GGG	p.A544G	TJP2_uc011lrs.1_Missense_Mutation_p.A521G|TJP2_uc011lrt.1_Missense_Mutation_p.A521G|TJP2_uc004ahd.2_Missense_Mutation_p.A544G|TJP2_uc004ahf.2_Missense_Mutation_p.A544G|TJP2_uc011lru.1_Missense_Mutation_p.A548G|TJP2_uc011lrv.1_Missense_Mutation_p.A566G	NM_004817	NP_004808	Q9UDY2	ZO2_HUMAN	tight junction protein 2 (zona occludens 2)	544	PDZ 3.				cellular component disassembly involved in apoptosis	adherens junction|cytoplasm|nucleus|tight junction	guanylate kinase activity|protein binding				0						GGGACCTCGGCGGAGCAGGAG	0.512													22	42					0	0	0.004656	0	0
MAMDC2	256691	broad.mit.edu	37	9	72833384	72833384	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:72833384G>A	uc004ahm.2	+	12	2400	c.1783G>A	c.(1783-1785)GGC>AGC	p.G595S	MAMDC2_uc004ahn.2_RNA|uc004ahq.1_RNA	NM_153267	NP_694999	Q7Z304	MAMC2_HUMAN	MAM domain containing 2 precursor	595	MAM 4.					endoplasmic reticulum|membrane				central_nervous_system(1)|pancreas(1)	2						AGGGGGCACTGGCCTGCTGAG	0.498													20	56					0	0	0.003330	0	0
SMC5	23137	broad.mit.edu	37	9	72930412	72930412	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:72930412C>T	uc004ahr.2	+	13	1841	c.1724C>T	c.(1723-1725)CCT>CTT	p.P575L		NM_015110	NP_055925	Q8IY18	SMC5_HUMAN	SMC5 protein	575	Flexible hinge.				DNA recombination|DNA repair	chromosome|nucleus	ATP binding			ovary(2)|central_nervous_system(1)	3						GCACCTGATCCTGTAATGAGT	0.323													6	21					0	0	0.001168	0	0
TRPM3	80036	broad.mit.edu	37	9	73151591	73151591	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:73151591C>T	uc004aid.2	-	25	4646	c.4402G>A	c.(4402-4404)GAC>AAC	p.D1468N	TRPM3_uc004ahu.2_Missense_Mutation_p.D1310N|TRPM3_uc004ahv.2_Missense_Mutation_p.D1270N|TRPM3_uc004ahw.2_Missense_Mutation_p.D1340N|TRPM3_uc004ahx.2_Missense_Mutation_p.D1327N|TRPM3_uc004ahy.2_Missense_Mutation_p.D1330N|TRPM3_uc004ahz.2_Missense_Mutation_p.D1317N|TRPM3_uc004aia.2_Missense_Mutation_p.D1315N|TRPM3_uc004aib.2_Missense_Mutation_p.D1305N|TRPM3_uc004aic.2_Intron	NM_001007471	NP_001007472	Q9HCF6	TRPM3_HUMAN	transient receptor potential cation channel,	1493	Cytoplasmic (Potential).					integral to membrane	calcium channel activity			ovary(3)|pancreas(2)|central_nervous_system(2)|skin(2)	9						GATCTAGTGTCCATGGAGGTG	0.512													15	52					0	0	0.004990	0	0
TMEM2	23670	broad.mit.edu	37	9	74345064	74345064	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:74345064G>A	uc011lsa.1	-	9	2419	c.1879C>T	c.(1879-1881)CCG>TCG	p.P627S	TMEM2_uc010mos.2_Missense_Mutation_p.P564S|TMEM2_uc011lsb.1_RNA	NM_013390	NP_037522	Q9UHN6	TMEM2_HUMAN	transmembrane protein 2 isoform a	627						integral to membrane				ovary(2)	2		all_epithelial(88;4.56e-14)|Myeloproliferative disorder(762;0.0255)		GBM - Glioblastoma multiforme(74;7.45e-21)|OV - Ovarian serous cystadenocarcinoma(323;1.02e-16)		AGAGTACCCGGCTTGGTGAGG	0.453													25	29					0	0	0.004656	0	0
RORB	6096	broad.mit.edu	37	9	77257730	77257730	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:77257730C>T	uc004aji.2	+	4	718	c.669C>T	c.(667-669)ATC>ATT	p.I223I	RORB_uc004ajh.2_Silent_p.I212I	NM_006914	NP_008845	Q92753	RORB_HUMAN	RAR-related orphan receptor B	223	Ligand-binding (Potential).				eye photoreceptor cell development|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|visual perception	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(2)|lung(1)|skin(1)	4						TGACTGAAATCGGTAAGTGGA	0.388													19	29					0	0	0.010504	0	0
TRPM6	140803	broad.mit.edu	37	9	77390969	77390969	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:77390969G>A	uc004ajl.1	-	24	3471	c.3233C>T	c.(3232-3234)TCC>TTC	p.S1078F	TRPM6_uc004ajk.1_Missense_Mutation_p.S1073F|TRPM6_uc010mpb.1_RNA|TRPM6_uc010mpc.1_Intron|TRPM6_uc010mpd.1_Intron|TRPM6_uc010mpe.1_Intron|TRPM6_uc004ajj.1_Missense_Mutation_p.S34F	NM_017662	NP_060132	Q9BX84	TRPM6_HUMAN	transient receptor potential cation channel,	1078	Cytoplasmic (Potential).				response to toxin	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|stomach(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	8						ATTTGAAATGGATTCCATATC	0.428													10	52					0	0	0.008291	0	0
TRPM6	140803	broad.mit.edu	37	9	77417047	77417047	+	Missense_Mutation	SNP	T	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:77417047T>A	uc004ajl.1	-	16	2014	c.1776A>T	c.(1774-1776)GAA>GAT	p.E592D	TRPM6_uc004ajk.1_Missense_Mutation_p.E587D|TRPM6_uc010mpb.1_RNA|TRPM6_uc010mpc.1_Intron|TRPM6_uc010mpd.1_Intron|TRPM6_uc010mpe.1_Intron|TRPM6_uc004ajm.1_5'UTR	NM_017662	NP_060132	Q9BX84	TRPM6_HUMAN	transient receptor potential cation channel,	592	Cytoplasmic (Potential).				response to toxin	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|stomach(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	8						ATACATTTTGTTCTTTTGACT	0.368													7	15					0	0	0.003080	0	0
TRPM6	140803	broad.mit.edu	37	9	77425749	77425749	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:77425749G>A	uc004ajl.1	-	13	1717	c.1479C>T	c.(1477-1479)CTC>CTT	p.L493L	TRPM6_uc004ajk.1_Silent_p.L488L|TRPM6_uc010mpb.1_RNA|TRPM6_uc010mpc.1_Silent_p.L493L|TRPM6_uc010mpd.1_Silent_p.L493L|TRPM6_uc010mpe.1_Intron	NM_017662	NP_060132	Q9BX84	TRPM6_HUMAN	transient receptor potential cation channel,	493	Cytoplasmic (Potential).				response to toxin	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|stomach(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	8						CATCTTGGACGAGATGATGCA	0.378													18	30					0	0	0.008871	0	0
Unknown	0	broad.mit.edu	37	9	78936388	78936388	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:78936388G>A	uc004akc.1	+	3	330	c.110G>A	c.(109-111)AGA>AAA	p.R37K						Homo sapiens cDNA FLJ16215 fis, clone CTONG2025610, moderately similar to PC6B.																		TCTCCTTGCAGAACATGTGAA	0.557													22	44					0	0	0.002780	0	0
PRUNE2	158471	broad.mit.edu	37	9	79267532	79267532	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:79267532G>A	uc010mpk.2	-	11	8548	c.8424C>T	c.(8422-8424)ATC>ATT	p.I2808I	PRUNE2_uc011lsk.1_Silent_p.I57I|PRUNE2_uc011lsl.1_Silent_p.I72I|PRUNE2_uc011lsm.1_Silent_p.I72I|PRUNE2_uc004akj.3_Silent_p.I261I|PRUNE2_uc010mpl.1_Silent_p.I261I	NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	2808					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						GAGAAAGATTGATATTTGGGG	0.408													25	124					0	0	0.003954	0	0
PRUNE2	158471	broad.mit.edu	37	9	79318599	79318599	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:79318599G>A	uc010mpk.2	-	9	8054	c.7930C>T	c.(7930-7932)CCA>TCA	p.P2644S	PRUNE2_uc004akj.3_Missense_Mutation_p.P97S|PRUNE2_uc010mpl.1_Missense_Mutation_p.P97S	NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	2644					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						TCCAGTGATGGATCACCAACC	0.527													7	17					0	0	0.001984	0	0
PRUNE2	158471	broad.mit.edu	37	9	79320738	79320738	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:79320738C>T	uc010mpk.2	-	8	6576	c.6452G>A	c.(6451-6453)CGG>CAG	p.R2151Q	PRUNE2_uc004akj.3_5'Flank|PRUNE2_uc010mpl.1_5'Flank	NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	2151					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity	p.R2151Q(1)			0						GACAAACTCCCGTCCAGGCTC	0.512													37	68					0	0	0.004289	0	0
PRUNE2	158471	broad.mit.edu	37	9	79325752	79325752	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:79325752C>T	uc010mpk.2	-	8	1562	c.1438G>A	c.(1438-1440)GAA>AAA	p.E480K		NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	480					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						CATGCATGTTCCTCCGCCACC	0.597													8	15					0	0	0.008291	0	0
PRUNE2	158471	broad.mit.edu	37	9	79325895	79325895	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:79325895G>A	uc010mpk.2	-	8	1419	c.1295C>T	c.(1294-1296)ACC>ATC	p.T432I		NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	432					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						GCTCCTAATGGTAGCCAGTCC	0.547													4	24					0	0	0.000602	0	0
VPS13A	23230	broad.mit.edu	37	9	79853224	79853224	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:79853224C>T	uc004akr.2	+	19	2082	c.1822C>T	c.(1822-1824)CCA>TCA	p.P608S	VPS13A_uc004akp.3_Missense_Mutation_p.P608S|VPS13A_uc004akq.3_Missense_Mutation_p.P608S|VPS13A_uc004aks.2_Missense_Mutation_p.P608S	NM_033305	NP_150648	Q96RL7	VP13A_HUMAN	vacuolar protein sorting 13A isoform A	608					Golgi to endosome transport|protein transport	intracellular	protein binding			pancreas(3)|skin(3)|ovary(2)|large_intestine(1)|central_nervous_system(1)	10						CTTCAGACCTCCAAAAGAGGT	0.338													13	33					0	0	0.004990	0	0
FLJ46321	389763	broad.mit.edu	37	9	84608517	84608517	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:84608517C>T	uc004amn.2	+	4	3179	c.3132C>T	c.(3130-3132)CCC>CCT	p.P1044P		NM_001001670	NP_001001670	Q6ZQQ2	F75D1_HUMAN	hypothetical protein LOC389763	1044						integral to membrane					0						GCTCATTCCCCATCCTCGGTC	0.428													55	128					0	0	0.014410	0	0
RASEF	158158	broad.mit.edu	37	9	85613319	85613319	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:85613319C>T	uc004amo.1	-	13	2027	c.1766G>A	c.(1765-1767)CGA>CAA	p.R589Q		NM_152573	NP_689786	Q8IZ41	RASEF_HUMAN	RAS and EF-hand domain containing	589					protein transport|small GTPase mediated signal transduction	perinuclear region of cytoplasm	calcium ion binding|GTP binding			upper_aerodigestive_tract(1)|lung(1)|breast(1)	3						CAGAACTGTTCGTTCTCCATC	0.468													29	105					0	0	0.010818	0	0
UBQLN1	29979	broad.mit.edu	37	9	86284156	86284156	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:86284156G>A	uc004amv.2	-	7	1766	c.1192C>T	c.(1192-1194)CCC>TCC	p.P398S	UBQLN1_uc004amw.2_Missense_Mutation_p.P398S	NM_013438	NP_038466	Q9UMX0	UBQL1_HUMAN	ubiquilin 1 isoform 1	398					apoptosis|regulation of protein ubiquitination|response to hypoxia	endoplasmic reticulum|nucleus|perinuclear region of cytoplasm|proteasome complex	kinase binding				0						CTCATGTAGGGGGCAGACAAC	0.413													9	20					0	0	0.004482	0	0
GKAP1	80318	broad.mit.edu	37	9	86356932	86356932	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:86356932G>A	uc004amy.2	-	12	1484	c.988C>T	c.(988-990)CAT>TAT	p.H330Y	GKAP1_uc004amz.2_Missense_Mutation_p.H279Y	NM_025211	NP_079487	Q5VSY0	GKAP1_HUMAN	G kinase anchoring protein 1 isoform a	330	Potential.				signal transduction	Golgi apparatus					0						AATGCAGCATGAAGTGAAGTC	0.294													6	21					0	0	0.003080	0	0
GKAP1	80318	broad.mit.edu	37	9	86403586	86403586	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:86403586G>A	uc004amy.2	-	5	864	c.368C>T	c.(367-369)TCT>TTT	p.S123F	GKAP1_uc004amz.2_Missense_Mutation_p.S123F|GKAP1_uc011lsu.1_RNA	NM_025211	NP_079487	Q5VSY0	GKAP1_HUMAN	G kinase anchoring protein 1 isoform a	123					signal transduction	Golgi apparatus					0						AAACATTTCAGATGTCAGCTA	0.289													33	60					0	0	0.006999	0	0
KIF27	55582	broad.mit.edu	37	9	86504116	86504116	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:86504116C>T	uc004ana.2	-	7	2006	c.1862G>A	c.(1861-1863)CGA>CAA	p.R621Q	KIF27_uc010mpw.2_Missense_Mutation_p.R621Q|KIF27_uc010mpx.2_Missense_Mutation_p.R621Q	NM_017576	NP_060046	Q86VH2	KIF27_HUMAN	kinesin family member 27	621					cilium assembly|microtubule-based movement	cilium|cytoplasm|microtubule	ATP binding|microtubule motor activity			lung(4)|skin(1)	5						ACTTCGTGTTCGAAATCCAGC	0.418													48	84					0	0	0.014410	0	0
NTRK2	4915	broad.mit.edu	37	9	87339142	87339142	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:87339142G>A	uc004aoa.1	+	10	1662	c.724G>A	c.(724-726)GAA>AAA	p.E242K	NTRK2_uc004anv.1_Missense_Mutation_p.E242K|NTRK2_uc004any.1_Missense_Mutation_p.E242K|NTRK2_uc004anz.1_Missense_Mutation_p.E242K|NTRK2_uc011lsz.1_Missense_Mutation_p.E242K|NTRK2_uc011lta.1_Missense_Mutation_p.E242K|NTRK2_uc004aob.1_Missense_Mutation_p.E242K|NTRK2_uc011ltb.1_Missense_Mutation_p.E86K	NM_001018064	NP_001018074	Q16620	NTRK2_HUMAN	neurotrophic tyrosine kinase, receptor, type 2	242	Extracellular (Potential).|Ig-like C2-type 1.				activation of adenylate cyclase activity|cell differentiation|nerve growth factor receptor signaling pathway|nervous system development	integral to plasma membrane	ATP binding|neurotrophin receptor activity|transmembrane receptor protein tyrosine kinase activity			lung(11)|central_nervous_system(1)|breast(1)|skin(1)|ovary(1)|liver(1)	16						TTTGTAGAATGAAACAAGCCA	0.388										TSP Lung(25;0.17)			19	22					0	0	0.010504	0	0
CTSL3	392360	broad.mit.edu	37	9	90388119	90388119	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:90388119G>A	uc004apm.1	+	2	190	c.184G>A	c.(184-186)GAT>AAT	p.D62N		NR_027917				RecName: Full=Putative cathepsin L-like protein 3;          Short=Cathepsin L-like protein; AltName: Full=HCTSL-s;											ovary(1)	1						CAAATCTGTGGATTGGAGAGA	0.502													8	24					0	0	0.004482	0	0
C9orf79	286234	broad.mit.edu	37	9	90499516	90499516	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:90499516C>T	uc004app.3	+	3	410	c.375C>T	c.(373-375)ATC>ATT	p.I125I	C9orf79_uc004apo.1_Intron	NM_178828	NP_849150	Q6ZUB1	CI079_HUMAN	chromosome 9 open reading frame 79	125						integral to membrane				ovary(3)	3						CTTGCAGAATCCTCCTGAGGG	0.572													6	37					0	0	0.001984	0	0
C9orf79	286234	broad.mit.edu	37	9	90502188	90502188	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:90502188G>A	uc004app.3	+	4	2821	c.2786G>A	c.(2785-2787)GGA>GAA	p.G929E		NM_178828	NP_849150	Q6ZUB1	CI079_HUMAN	chromosome 9 open reading frame 79	929						integral to membrane				ovary(3)	3						GAGCAGGAGGGAGTCCAGAGG	0.622													15	28					0	0	0.003163	0	0
CDK20	23552	broad.mit.edu	37	9	90584230	90584230	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:90584230G>A	uc004apr.2	-	7	1028	c.722C>T	c.(721-723)TCC>TTC	p.S241F	CDK20_uc004aps.2_Missense_Mutation_p.S220F|CDK20_uc004apt.2_Missense_Mutation_p.S233F|CDK20_uc004apu.2_Missense_Mutation_p.P179S	NM_001039803	NP_001034892	Q8IZL9	CDK20_HUMAN	cell cycle related kinase isoform 3	241	Protein kinase.				cell division|multicellular organismal development	cilium|mitochondrion|nucleus	ATP binding|cyclin-dependent protein kinase activity			skin(1)	1						CTCCTTAAAGGAGATCTTGTT	0.577													19	74					0	0	0.012319	0	0
LOC286238	286238	broad.mit.edu	37	9	91262491	91262491	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:91262491C>T	uc010mql.1	-	2	285	c.152G>A	c.(151-153)GGA>GAA	p.G51E		NM_001100111	NP_001093581			hypothetical protein LOC286238												0						GAACACATTTCCAGGTCTCAG	0.398													7	75					0	0	0.008291	0	0
DIRAS2	54769	broad.mit.edu	37	9	93375783	93375783	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:93375783C>T	uc004aqx.1	-	2	438	c.327G>A	c.(325-327)GGG>GGA	p.G109G		NM_017594	NP_060064	Q96HU8	DIRA2_HUMAN	Di-Ras2	109					small GTPase mediated signal transduction	intracellular|plasma membrane	GTP binding|GTPase activity				0						TCTCCACGTCCCCTTTGATCT	0.592													9	60					0	0	0.006214	0	0
NFIL3	4783	broad.mit.edu	37	9	94172655	94172655	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:94172655G>A	uc004arh.2	-	2	757	c.362C>T	c.(361-363)TCA>TTA	p.S121L		NM_005384	NP_005375	Q16649	NFIL3_HUMAN	nuclear factor, interleukin 3 regulated	121	Leucine-zipper.				circadian rhythm|immune response|transcription from RNA polymerase II promoter	nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity				0						TAATTTTAGTGAAAGCAGCTC	0.383													20	54					0	0	0.007413	0	0
ROR2	4920	broad.mit.edu	37	9	94486388	94486388	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:94486388G>A	uc004arj.1	-	9	2587	c.2388C>T	c.(2386-2388)TTC>TTT	p.F796F	ROR2_uc004ari.1_Intron	NM_004560	NP_004551	Q01974	ROR2_HUMAN	receptor tyrosine kinase-like orphan receptor 2	796	Cytoplasmic (Potential).|Pro-rich.				negative regulation of cell proliferation|positive regulation of cell migration|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity|Wnt-protein binding			lung(8)|central_nervous_system(5)|ovary(3)|large_intestine(2)|stomach(1)|breast(1)	20						GGGGCTGTGGGAAGGGCGGGG	0.677													21	52					0	0	0.003330	0	0
ROR2	4920	broad.mit.edu	37	9	94486579	94486579	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:94486579G>A	uc004arj.1	-	9	2396	c.2197C>T	c.(2197-2199)CCC>TCC	p.P733S	ROR2_uc004ari.1_Missense_Mutation_p.P593S	NM_004560	NP_004551	Q01974	ROR2_HUMAN	receptor tyrosine kinase-like orphan receptor 2	733	Cytoplasmic (Potential).|Protein kinase.				negative regulation of cell proliferation|positive regulation of cell migration|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity|Wnt-protein binding			lung(8)|central_nervous_system(5)|ovary(3)|large_intestine(2)|stomach(1)|breast(1)	20						CGCCGGCTGGGGAACTCGTTC	0.647													28	32					0	0	0.008361	0	0
IARS	3376	broad.mit.edu	37	9	95050137	95050137	+	Missense_Mutation	SNP	A	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:95050137A>C	uc004art.1	-	4	589	c.332T>G	c.(331-333)ATG>AGG	p.M111R	IARS_uc004ars.1_5'UTR|IARS_uc004aru.3_Missense_Mutation_p.M111R|IARS_uc010mqr.2_Missense_Mutation_p.M1R|IARS_uc010mqt.2_Intron	NM_013417	NP_038203	P41252	SYIC_HUMAN	isoleucine tRNA synthetase	111					isoleucyl-tRNA aminoacylation	cytosol|nucleus|soluble fraction	ATP binding|isoleucine-tRNA ligase activity|protein binding			ovary(1)|skin(1)	2					L-Isoleucine(DB00167)	TGTAATCCCCATTTTGGCCAC	0.403													14	22					0	0	0.004007	0	0
ZNF484	83744	broad.mit.edu	37	9	95609097	95609097	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:95609097G>A	uc004asu.1	-	5	2121	c.1972C>T	c.(1972-1974)CAC>TAC	p.H658Y	ANKRD19_uc004asr.3_Intron|ZNF484_uc011lub.1_Missense_Mutation_p.H660Y|ZNF484_uc010mrb.1_Missense_Mutation_p.H622Y|ZNF484_uc004asv.1_Missense_Mutation_p.H622Y	NM_031486	NP_113674	Q5JVG2	ZN484_HUMAN	zinc finger protein 484 isoform a	658	C2H2-type 14.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TCTCCAGTGTGAATTTTCTGG	0.428													13	52					0	0	0.001855	0	0
CDC14B	8555	broad.mit.edu	37	9	99286000	99286000	+	Silent	SNP	A	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:99286000A>T	uc004awj.2	-	10	1406	c.954T>A	c.(952-954)CTT>CTA	p.L318L	CDC14B_uc004awk.2_Silent_p.L318L|CDC14B_uc004awl.2_RNA|CDC14B_uc004awi.2_Silent_p.L281L	NM_033331	NP_201588	O60729	CC14B_HUMAN	CDC14 homolog B isoform 2	318	B.				activation of anaphase-promoting complex activity|DNA repair|G2/M transition DNA damage checkpoint	nucleolus|nucleoplasm	protein binding|protein serine/threonine phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(1)	1		Acute lymphoblastic leukemia(62;0.0559)				CCGTGCGACCAAGGCCAGCTA	0.493													4	19					0	0	0.000602	0	0
LOC441455	441455	broad.mit.edu	37	9	99488345	99488345	+	RNA	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:99488345G>A	uc011luo.1	+	1		c.243G>A				NR_026792				Homo sapiens makorin ring finger protein 1 pseudogene, mRNA (cDNA clone IMAGE:5556543), with apparent retained intron.												0						ATTGAAACAGGAAGAAGCAGC	0.448													4	19					0	0	0.009096	0	0
ZNF782	158431	broad.mit.edu	37	9	99580357	99580357	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:99580357G>A	uc004awp.1	-	6	2229	c.1948C>T	c.(1948-1950)CAG>TAG	p.Q650*	ZNF782_uc011lup.1_Nonsense_Mutation_p.Q518*	NM_001001662	NP_001001662	Q6ZMW2	ZN782_HUMAN	zinc finger protein 782	650	C2H2-type 14.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Acute lymphoblastic leukemia(62;0.0527)				TCCCCACACTGATTACAATTA	0.413													23	46					0	0	0.009535	0	0
CTSL2	1515	broad.mit.edu	37	9	99799623	99799623	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:99799623C>T	uc004awt.2	-	4	504	c.307G>A	c.(307-309)GGG>AGG	p.G103R	CTSL2_uc010msi.2_Missense_Mutation_p.G103R|CTSL2_uc004awu.2_Missense_Mutation_p.G48R|CTSL2_uc010msj.1_Missense_Mutation_p.G48R|CTSL2_uc010msk.2_Missense_Mutation_p.G48R	NM_001333	NP_001324	O60911	CATL2_HUMAN	cathepsin L2 preproprotein	103						lysosome	cysteine-type endopeptidase activity				0		Acute lymphoblastic leukemia(62;0.0559)				AACACTTTCCCCTTCCTGAAT	0.423													15	26					0	0	0.004007	0	0
NANS	54187	broad.mit.edu	37	9	100843246	100843246	+	Missense_Mutation	SNP	C	T	T	rs117325934	byFrequency	TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:100843246C>T	uc004ayb.2	+	6	1394	c.752C>T	c.(751-753)TCG>TTG	p.S251L	NANS_uc004ayc.2_Missense_Mutation_p.S251L|TRIM14_uc004ayd.2_Intron|NANS_uc004aye.1_Missense_Mutation_p.S99L|TRIM14_uc004ayf.1_3'UTR	NM_018946	NP_061819	Q9NR45	SIAS_HUMAN	N-acetylneuraminic acid phosphate synthase	251					lipopolysaccharide biosynthetic process	cytoplasm	N-acetylneuraminate synthase activity|N-acylneuraminate cytidylyltransferase activity|N-acylneuraminate-9-phosphate synthase activity			skin(1)	1		Acute lymphoblastic leukemia(62;0.0559)				AGTGACCACTCGGCCTCGCTG	0.617													16	21					0	0	0.004007	0	0
CORO2A	7464	broad.mit.edu	37	9	100888952	100888952	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:100888952G>A	uc004ayl.2	-	11	1591	c.1325C>T	c.(1324-1326)TCC>TTC	p.S442F	CORO2A_uc004aym.2_Missense_Mutation_p.S442F|CORO2A_uc004ayk.2_Missense_Mutation_p.S89F	NM_003389	NP_003380	Q92828	COR2A_HUMAN	coronin, actin binding protein, 2A	442					actin cytoskeleton organization|intracellular signal transduction	actin cytoskeleton|transcriptional repressor complex	actin filament binding			skin(2)|ovary(1)|pancreas(1)	4		Acute lymphoblastic leukemia(62;0.0559)				CAACAGGGAGGAAGACCTCCA	0.547													52	72					0	0	0.014410	0	0
CORO2A	7464	broad.mit.edu	37	9	100899903	100899903	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:100899903C>T	uc004ayl.2	-	3	535	c.269G>A	c.(268-270)TGG>TAG	p.W90*	CORO2A_uc004aym.2_Nonsense_Mutation_p.W90*	NM_003389	NP_003380	Q92828	COR2A_HUMAN	coronin, actin binding protein, 2A	90	WD 1.				actin cytoskeleton organization|intracellular signal transduction	actin cytoskeleton|transcriptional repressor complex	actin filament binding			skin(2)|ovary(1)|pancreas(1)	4		Acute lymphoblastic leukemia(62;0.0559)				AAAAGGGTTCCACTTGACATC	0.557													17	68					0	0	0.008871	0	0
GABBR2	9568	broad.mit.edu	37	9	101056138	101056138	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:101056138C>T	uc004ays.2	-	18	2745	c.2589G>A	c.(2587-2589)CAG>CAA	p.Q863Q		NM_005458	NP_005449	O75899	GABR2_HUMAN	G protein-coupled receptor 51 precursor	863	Cytoplasmic (Potential).				negative regulation of adenylate cyclase activity|synaptic transmission	cell junction|integral to plasma membrane|postsynaptic membrane	G-protein coupled receptor activity|GABA-B receptor activity			ovary(2)|skin(2)	4		Acute lymphoblastic leukemia(62;0.0527)			Baclofen(DB00181)	TCCACTGTAGCTGGGGATTTT	0.373													35	53					0	0	0.004289	0	0
TEX10	54881	broad.mit.edu	37	9	103111464	103111464	+	Splice_Site	SNP	A	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:103111464A>T	uc004bas.2	-	2	395	c.180_splice	c.e2+1	p.K60_splice	TEX10_uc011lvf.1_5'Flank|TEX10_uc011lvg.1_Splice_Site_p.K63_splice|TEX10_uc011lvh.1_Intron|TEX10_uc004bat.2_Splice_Site_p.K60_splice	NM_017746	NP_060216	Q9NXF1	TEX10_HUMAN	testis expressed 10 isoform 1							integral to membrane|MLL1 complex|nuclear membrane|nucleolus	binding			ovary(1)|skin(1)	2		Acute lymphoblastic leukemia(62;0.0527)		OV - Ovarian serous cystadenocarcinoma(323;0.157)		TTTATGATTTACCTTTATGTT	0.294													4	26					0	0	0.009096	0	0
LPPR1	54886	broad.mit.edu	37	9	104032288	104032288	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:104032288G>A	uc004bbb.2	+	3	589	c.190G>A	c.(190-192)GAA>AAA	p.E64K	LPPR1_uc011lvi.1_Missense_Mutation_p.E40K|LPPR1_uc004bbc.2_Missense_Mutation_p.E64K|LPPR1_uc010mtc.2_Missense_Mutation_p.E48K	NM_207299	NP_997182	Q8TBJ4	LPPR1_HUMAN	plasticity related gene 3	64						integral to membrane	catalytic activity				0						AGGGACAGAGGAAGAAAGCTT	0.463													13	29					0	0	0.001855	0	0
C9orf125	84302	broad.mit.edu	37	9	104238324	104238325	+	Silent	DNP	GG	AA	AA			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:104238324_104238325GG>AA	uc004bbm.2	-	2	1372_1373	c.1050_1051CC>TT	c.(1048-1053)TACCTG>TATTTG	p.350_351YL>YL	uc004bbl.1_5'Flank	NM_032342	NP_115718	Q9BRR3	CI125_HUMAN	hypothetical protein LOC84302	350_351						integral to membrane					0		Acute lymphoblastic leukemia(62;0.0527)				ACTTGGGACAGGTAGGTGAGGG	0.619													6	25					0	0	0.004672	0	0
PPP3R2	5535	broad.mit.edu	37	9	104356750	104356750	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:104356750C>T	uc004bbr.2	-	1	534	c.463G>A	c.(463-465)GAA>AAA	p.E155K	GRIN3A_uc004bbp.1_Intron|GRIN3A_uc004bbq.1_Intron|PPP3R2_uc010mtf.1_RNA	NM_147180	NP_671709	Q96LZ3	CANB2_HUMAN	protein phosphatase 3 regulatory subunit B, beta	152	EF-hand 4.|4.						calcium ion binding			ovary(1)|skin(1)	2		Acute lymphoblastic leukemia(62;0.0527)			Cyclosporine(DB00091)	GCACTGAATTCCTCAAAGGAT	0.507													14	49					0	0	0.001855	0	0
GRIN3A	116443	broad.mit.edu	37	9	104390670	104390670	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:104390670G>A	uc004bbp.1	-	4	2967	c.2366C>T	c.(2365-2367)TCC>TTC	p.S789F	GRIN3A_uc004bbq.1_Missense_Mutation_p.S789F	NM_133445	NP_597702	Q8TCU5	NMD3A_HUMAN	glutamate receptor, ionotropic,	789	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|neuron projection|neuronal cell body|outer membrane-bounded periplasmic space|postsynaptic density|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|glycine binding|identical protein binding|N-methyl-D-aspartate selective glutamate receptor activity|protein phosphatase 2A binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7		Acute lymphoblastic leukemia(62;0.0568)			Acamprosate(DB00659)|Chloroprocaine(DB01161)|Dextromethorphan(DB00514)|Ethanol(DB00898)|Ethopropazine(DB00392)|Felbamate(DB00949)|Ketamine(DB01221)|L-Glutamic Acid(DB00142)|Memantine(DB01043)|Meperidine(DB00454)|Methadone(DB00333)|Orphenadrine(DB01173)|Procaine(DB00721)|Riluzole(DB00740)	GAATCCTTGGGAAGGATGATG	0.328													16	16					0	0	0.004990	0	0
OR13F1	138805	broad.mit.edu	37	9	107266684	107266684	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:107266684C>T	uc011lvm.1	+	1	141	c.141C>T	c.(139-141)TCC>TCT	p.S47S		NM_001004485	NP_001004485	Q8NGS4	O13F1_HUMAN	olfactory receptor, family 13, subfamily F,	47	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)|skin(1)	3						TTCTGATCTCCATCACCATTC	0.478													37	62					0	0	0.007835	0	0
OR13F1	138805	broad.mit.edu	37	9	107267146	107267146	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:107267146G>A	uc011lvm.1	+	1	603	c.603G>A	c.(601-603)GTG>GTA	p.V201V		NM_001004485	NP_001004485	Q8NGS4	O13F1_HUMAN	olfactory receptor, family 13, subfamily F,	201	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)|skin(1)	3						TCATGCTGGTGATCAGTGTAC	0.433													37	113					0	0	0.007835	0	0
OR13F1	138805	broad.mit.edu	37	9	107267348	107267348	+	Missense_Mutation	SNP	G	A	A	rs140352060		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:107267348G>A	uc011lvm.1	+	1	805	c.805G>A	c.(805-807)GAA>AAA	p.E269K		NM_001004485	NP_001004485	Q8NGS4	O13F1_HUMAN	olfactory receptor, family 13, subfamily F,	269	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)|skin(1)	3						AGATTCACAGGAAATAGACAA	0.468													16	34					0	0	0.003163	0	0
OR13C4	138804	broad.mit.edu	37	9	107288831	107288831	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:107288831G>A	uc011lvn.1	-	1	660	c.660C>T	c.(658-660)TTC>TTT	p.F220F		NM_001001919	NP_001001919	Q8NGS5	O13C4_HUMAN	olfactory receptor, family 13, subfamily C,	220	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TGTAGAGGATGAACATATAGG	0.408													27	47					0	0	0.005443	0	0
OR13C3	138803	broad.mit.edu	37	9	107298474	107298474	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:107298474G>A	uc004bcb.1	-	1	621	c.621C>T	c.(619-621)TTC>TTT	p.F207F		NM_001001961	NP_001001961	Q8NGS6	O13C3_HUMAN	olfactory receptor, family 13, subfamily C,	207	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1						TTTCACATGCGAAATGATTGA	0.428													25	45					0	0	0.005443	0	0
OR13C8	138802	broad.mit.edu	37	9	107331602	107331603	+	Missense_Mutation	DNP	GA	AT	AT			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:107331602_107331603GA>AT	uc011lvo.1	+	1	154_155	c.154_155GA>AT	c.(154-156)GAT>ATT	p.D52I		NM_001004483	NP_001004483	Q8NGS7	O13C8_HUMAN	olfactory receptor, family 13, subfamily C,	52	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						TATCATCTTTGATTCTCACCTG	0.441													75	103					0	0	0.004672	0	0
OR13C2	392376	broad.mit.edu	37	9	107367602	107367602	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:107367602G>A	uc011lvq.1	-	1	307	c.307C>T	c.(307-309)CTC>TTC	p.L103F		NM_001004481	NP_001004481	Q8NGS9	O13C2_HUMAN	olfactory receptor, family 13, subfamily C,	103	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						GCCAAGCCGAGGAACATCTGC	0.517													23	71					0	0	0.004656	0	0
TAL2	6887	broad.mit.edu	37	9	108424936	108424936	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:108424936C>T	uc004bct.2	+	1	199	c.159C>T	c.(157-159)TTC>TTT	p.F53F		NM_005421	NP_005412	Q16559	TAL2_HUMAN	T-cell acute lymphocytic leukemia 2	53	Helix-loop-helix motif.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding				0						ATATCAACTTCTTGGTCAAGG	0.557			T	TRB@	T-ALL								13	31					0	0	0.004007	0	0
ZNF462	58499	broad.mit.edu	37	9	109687619	109687619	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:109687619C>T	uc004bcz.2	+	3	1715	c.1426C>T	c.(1426-1428)CCG>TCG	p.P476S	ZNF462_uc010mto.2_Missense_Mutation_p.P324S|ZNF462_uc004bda.2_Missense_Mutation_p.P324S	NM_021224	NP_067047	Q96JM2	ZN462_HUMAN	zinc finger protein 462	476	C2H2-type 5.				transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(5)	5						TGACGAATGTCCGTTTACTTG	0.458													14	48					0	0	0.001855	0	0
PTPN3	5774	broad.mit.edu	37	9	112168865	112168865	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:112168865C>T	uc004bed.2	-	18	1781	c.1669G>A	c.(1669-1671)GAT>AAT	p.D557N	PTPN3_uc004beb.2_Missense_Mutation_p.D426N|PTPN3_uc004bec.2_Missense_Mutation_p.D381N|PTPN3_uc010mtu.2_RNA|PTPN3_uc011lwg.1_Missense_Mutation_p.D512N|PTPN3_uc011lwh.1_Missense_Mutation_p.D403N|PTPN3_uc011lwd.1_Missense_Mutation_p.D25N|PTPN3_uc011lwe.1_Missense_Mutation_p.D270N|PTPN3_uc011lwf.1_Missense_Mutation_p.D225N	NM_002829	NP_002820	P26045	PTN3_HUMAN	protein tyrosine phosphatase, non-receptor type	557	PDZ.				negative regulation of membrane protein ectodomain proteolysis|negative regulation of mitotic cell cycle	cytoplasm|cytoskeleton|internal side of plasma membrane	ATPase binding|cytoskeletal protein binding|phosphotyrosine binding|protein tyrosine phosphatase activity			ovary(3)	3						ACGATTTGATCCCCTTCGTTC	0.537													29	81					0	0	0.013726	0	0
C9orf152	401546	broad.mit.edu	37	9	112963499	112963499	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:112963499C>T	uc011lwk.1	-	2	1003	c.449G>A	c.(448-450)AGG>AAG	p.R150K		NM_001012993	NP_001013011	Q5JTZ5	CI152_HUMAN	hypothetical protein LOC401546	150											0						AGGAGGGAGCCTTTGATCAGA	0.542													23	116					0	0	0.004656	0	0
SVEP1	79987	broad.mit.edu	37	9	113189870	113189870	+	Splice_Site	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:113189870C>T	uc010mtz.2	-	36	6312	c.5975_splice	c.e36+1	p.G1992_splice	SVEP1_uc010mty.2_Splice_Site	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom						cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						GCCCTACTCACCCTTCTTTGC	0.438											OREG0019389	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	14	71					0	0	0.004007	0	0
SVEP1	79987	broad.mit.edu	37	9	113192662	113192662	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:113192662C>T	uc010mtz.2	-	33	5759	c.5422G>A	c.(5422-5424)GGT>AGT	p.G1808S	SVEP1_uc010mty.2_5'Flank	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	1808	Sushi 7.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						ACTTCGGCACCTACTGTATAA	0.408													7	17					0	0	0.001984	0	0
SVEP1	79987	broad.mit.edu	37	9	113241922	113241922	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:113241922C>T	uc010mtz.2	-	13	2817	c.2480G>A	c.(2479-2481)GGA>GAA	p.G827E	SVEP1_uc010mua.1_Missense_Mutation_p.G827E|SVEP1_uc004beu.2_Missense_Mutation_p.G827E	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	827					cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						TACCATTTTTCCCAGGGTCGT	0.388													34	161					0	0	0.006230	0	0
LPAR1	1902	broad.mit.edu	37	9	113734378	113734378	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:113734378G>A	uc004bfa.2	-	3	275	c.20C>T	c.(19-21)TCC>TTC	p.S7F	LPAR1_uc011lwm.1_Intron|LPAR1_uc004bfb.2_Missense_Mutation_p.S7F|LPAR1_uc004bfc.2_Missense_Mutation_p.S7F|LPAR1_uc011lwn.1_Intron|LPAR1_uc011lwo.1_Intron|LPAR1_uc010mub.2_Missense_Mutation_p.S7F	NM_057159	NP_476500	Q92633	LPAR1_HUMAN	lysophosphatidic acid receptor 1	7	Extracellular (Potential).				positive regulation of I-kappaB kinase/NF-kappaB cascade	cell surface|integral to plasma membrane				ovary(2)	2						TACAGGGATGGAAGTAGAGAT	0.458													25	101					0	0	0.007291	0	0
OR2K2	26248	broad.mit.edu	37	9	114090020	114090020	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:114090020C>T	uc011lwp.1	-	1	694	c.694G>A	c.(694-696)GGA>AGA	p.G232R		NM_205859	NP_995581	Q8NGT1	OR2K2_HUMAN	olfactory receptor, family 2, subfamily K,	261	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						TTGTTTCTTCCCTCTGCTGAG	0.443													5	18					0	0	0.001168	0	0
C9orf84	158401	broad.mit.edu	37	9	114538131	114538131	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:114538131C>T	uc004bfr.2	-	3	325	c.190G>A	c.(190-192)GAA>AAA	p.E64K	C9orf84_uc011lwt.1_RNA|C9orf84_uc004bfs.1_Missense_Mutation_p.E128K	NM_173521	NP_775792	Q5VXU9	CI084_HUMAN	hypothetical protein LOC158401 isoform 1	64										ovary(2)	2						GTAAAGACTTCATTGTAGTCC	0.353													13	45					0	0	0.004007	0	0
KIAA1958	158405	broad.mit.edu	37	9	115337393	115337393	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:115337393C>T	uc004bgf.1	+	2	1208	c.1033C>T	c.(1033-1035)CAT>TAT	p.H345Y	KIAA1958_uc011lwx.1_Missense_Mutation_p.H345Y	NM_133465	NP_597722	Q8N8K9	K1958_HUMAN	hypothetical protein LOC158405	345										skin(1)	1						GTTCCTGTCCCATCTGCCCAG	0.567													25	105					0	0	0.002780	0	0
KIAA1958	158405	broad.mit.edu	37	9	115421617	115421617	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:115421617C>T	uc004bgf.1	+	4	1594	c.1419C>T	c.(1417-1419)TTC>TTT	p.F473F	KIAA1958_uc011lwx.1_Silent_p.F501F	NM_133465	NP_597722	Q8N8K9	K1958_HUMAN	hypothetical protein LOC158405	473										skin(1)	1						GCTCGGACTTCCTGGCCACCT	0.547													18	26					0	0	0.004990	0	0
SNX30	401548	broad.mit.edu	37	9	115580005	115580005	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:115580005C>T	uc004bgj.3	+	3	517	c.369C>T	c.(367-369)GAC>GAT	p.D123D		NM_001012994	NP_001013012	Q5VWJ9	SNX30_HUMAN	sorting nexin family member 30	123	PX.				cell communication|protein transport	cytoplasm	phosphatidylinositol binding				0						TGGAGTTTGACCTGCCAGAAT	0.433													9	39					0	0	0.004482	0	0
WDR31	114987	broad.mit.edu	37	9	116094253	116094253	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:116094253G>A	uc004bhe.2	-	3	302	c.50C>T	c.(49-51)TCG>TTG	p.S17L	WDR31_uc004bhc.2_Missense_Mutation_p.S17L|WDR31_uc004bhd.2_5'UTR|WDR31_uc004bhf.2_Intron	NM_001012361	NP_001012361	Q8NA23	WDR31_HUMAN	WD repeat domain 31 isoform 1	17											0						AAACCTAAACGAAACCTTCTG	0.458													17	23					0	0	0.012319	0	0
TNFSF15	9966	broad.mit.edu	37	9	117554687	117554687	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:117554687C>T	uc004bjh.2	-	3	417	c.301G>A	c.(301-303)GTT>ATT	p.V101I	TNFSF15_uc004bjg.2_Missense_Mutation_p.V42I	NM_005118	NP_005109	O95150	TNF15_HUMAN	tumor necrosis factor (ligand) superfamily,	101	Extracellular (Potential).				activation of caspase activity|activation of NF-kappaB-inducing kinase activity|cytokine metabolic process|immune response	extracellular space|integral to plasma membrane	cytokine activity|tumor necrosis factor receptor binding				0						GGAGGCTTACCTGTCAGGTGT	0.438													6	21					0	0	0.004482	0	0
TNC	3371	broad.mit.edu	37	9	117786291	117786291	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:117786291G>A	uc004bjj.3	-	27	6818	c.6456C>T	c.(6454-6456)GTC>GTT	p.V2152V	TNC_uc010mvf.2_Silent_p.V1879V	NM_002160	NP_002151	P24821	TENA_HUMAN	tenascin C precursor	2152	Fibrinogen C-terminal.				cell adhesion|response to wounding|signal transduction	extracellular space	receptor binding|syndecan binding			central_nervous_system(4)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	7						CCATCAGGTTGACACGGTGAC	0.547													34	50					0	0	0.012213	0	0
TNC	3371	broad.mit.edu	37	9	117810577	117810577	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:117810577C>T	uc004bjj.3	-	16	5176	c.4814G>A	c.(4813-4815)GGG>GAG	p.G1605E	TNC_uc010mvf.2_Intron	NM_002160	NP_002151	P24821	TENA_HUMAN	tenascin C precursor	1605	Fibronectin type-III 11.			SGFTQGHQT -> LWLHPRASN (in Ref. 1; no nucleotide entry, 3; AAA88083 and 7; AAA52703).	cell adhesion|response to wounding|signal transduction	extracellular space	receptor binding|syndecan binding			central_nervous_system(4)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	7						GGTTTGATGCCCTTGGGTGAA	0.488													34	88					0	0	0.004878	0	0
TNC	3371	broad.mit.edu	37	9	117819660	117819660	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:117819660G>A	uc004bjj.3	-	15	4713	c.4351C>T	c.(4351-4353)CCC>TCC	p.P1451S	TNC_uc010mvf.2_Intron	NM_002160	NP_002151	P24821	TENA_HUMAN	tenascin C precursor	1451	Fibronectin type-III 10.				cell adhesion|response to wounding|signal transduction	extracellular space	receptor binding|syndecan binding			central_nervous_system(4)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	7						AAGCTCTCGGGAGTTATGTCA	0.388													38	147					0	0	0.011902	0	0
TNC	3371	broad.mit.edu	37	9	117848531	117848531	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:117848531C>T	uc004bjj.3	-	3	1841	c.1479G>A	c.(1477-1479)GGG>GGA	p.G493G	TNC_uc010mvf.2_Silent_p.G493G	NM_002160	NP_002151	P24821	TENA_HUMAN	tenascin C precursor	493	EGF-like 11.				cell adhesion|response to wounding|signal transduction	extracellular space	receptor binding|syndecan binding			central_nervous_system(4)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	7						GGCAGTCTTCCCCTGTGTAGC	0.597													19	85					0	0	0.012319	0	0
TNC	3371	broad.mit.edu	37	9	117849292	117849292	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:117849292C>T	uc004bjj.3	-	3	1080	c.718G>A	c.(718-720)GAA>AAA	p.E240K	TNC_uc010mvf.2_Missense_Mutation_p.E240K	NM_002160	NP_002151	P24821	TENA_HUMAN	tenascin C precursor	240	EGF-like 3.				cell adhesion|response to wounding|signal transduction	extracellular space	receptor binding|syndecan binding			central_nervous_system(4)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	7						GCGTAGCCTTCGAAACAGATG	0.607													15	34					0	0	0.004007	0	0
PAPPA	5069	broad.mit.edu	37	9	118969825	118969825	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:118969825G>A	uc004bjn.2	+	3	1950	c.1569G>A	c.(1567-1569)GAG>GAA	p.E523E	PAPPA_uc011lxp.1_Silent_p.E316E|PAPPA_uc011lxq.1_Intron	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	523	Metalloprotease.				cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						CCTCAGAGGAGGAGTTGGCAG	0.443													10	30					0	0	0.006214	0	0
ASTN2	23245	broad.mit.edu	37	9	119739047	119739047	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:119739047C>T	uc004bjs.1	-	8	1710	c.1609G>A	c.(1609-1611)GAA>AAA	p.E537K	ASTN2_uc004bjr.1_Missense_Mutation_p.E537K|ASTN2_uc004bjt.1_Missense_Mutation_p.E486K	NM_198187	NP_937830	O75129	ASTN2_HUMAN	astrotactin 2 isoform c	537	Extracellular (Potential).|EGF-like 1.					integral to membrane				skin(4)|ovary(3)|breast(1)|kidney(1)	9						GCATAGCCTTCATGACAGCTG	0.483													23	13					0	0	0.004656	0	0
ASTN2	23245	broad.mit.edu	37	9	119903672	119903672	+	Silent	SNP	G	A	A	rs140458736	by1000genomes	TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:119903672G>A	uc004bjs.1	-	4	1202	c.1101C>T	c.(1099-1101)ATC>ATT	p.I367I	ASTN2_uc004bjr.1_Silent_p.I367I|ASTN2_uc004bjt.1_Intron	NM_198187	NP_937830	O75129	ASTN2_HUMAN	astrotactin 2 isoform c	367	Cytoplasmic (Potential).					integral to membrane				skin(4)|ovary(3)|breast(1)|kidney(1)	9						GCAGCTGACCGATCTCGATGG	0.587													15	19					0	0	0.003163	0	0
ASTN2	23245	broad.mit.edu	37	9	119976741	119976741	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:119976741C>T	uc004bjs.1	-	3	1012	c.911G>A	c.(910-912)CGG>CAG	p.R304Q	ASTN2_uc004bjr.1_Missense_Mutation_p.R304Q|ASTN2_uc004bjt.1_Missense_Mutation_p.R304Q	NM_198187	NP_937830	O75129	ASTN2_HUMAN	astrotactin 2 isoform c	304	Cytoplasmic (Potential).					integral to membrane				skin(4)|ovary(3)|breast(1)|kidney(1)	9						ATGGTTGGCCCGCCTAGGTGG	0.592													11	50					0	0	0.008291	0	0
TLR4	7099	broad.mit.edu	37	9	120474857	120474858	+	Missense_Mutation	DNP	AC	TA	TA			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:120474857_120474858AC>TA	uc004bjz.2	+	3	742_743	c.451_452AC>TA	c.(451-453)ACT>TAT	p.T151Y	TLR4_uc004bka.2_Missense_Mutation_p.T111Y|TLR4_uc004bkb.2_5'UTR	NM_138554	NP_612564	O00206	TLR4_HUMAN	toll-like receptor 4 precursor	151	Extracellular (Potential).|LRR 5.				activation of MAPK activity|cellular response to mechanical stimulus|detection of fungus|detection of lipopolysaccharide|I-kappaB phosphorylation|innate immune response|intestinal epithelial structure maintenance|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of ERK1 and ERK2 cascade|negative regulation of interferon-gamma production|negative regulation of interleukin-17 production|negative regulation of interleukin-23 production|negative regulation of interleukin-6 production|negative regulation of osteoclast differentiation|negative regulation of tumor necrosis factor production|positive regulation of chemokine production|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|positive regulation of interferon-gamma production|positive regulation of interleukin-1 production|positive regulation of interleukin-10 production|positive regulation of interleukin-12 biosynthetic process|positive regulation of interleukin-12 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 biosynthetic process|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of platelet activation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor biosynthetic process|positive regulation of tumor necrosis factor production|T-helper 1 type immune response|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	external side of plasma membrane|integral to plasma membrane|lipopolysaccharide receptor complex|perinuclear region of cytoplasm	lipopolysaccharide receptor activity|transmembrane receptor activity			lung(10)|ovary(4)|breast(1)|skin(1)	16						ACATCTCAAAACTTTGAAAGAA	0.416													9	38					0	0	0.004672	0	0
TLR4	7099	broad.mit.edu	37	9	120475051	120475051	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:120475051G>A	uc004bjz.2	+	3	936	c.645G>A	c.(643-645)ATG>ATA	p.M215I	TLR4_uc004bka.2_Missense_Mutation_p.M175I|TLR4_uc004bkb.2_Missense_Mutation_p.M15I	NM_138554	NP_612564	O00206	TLR4_HUMAN	toll-like receptor 4 precursor	215	LRR 7.|Extracellular (Potential).				activation of MAPK activity|cellular response to mechanical stimulus|detection of fungus|detection of lipopolysaccharide|I-kappaB phosphorylation|innate immune response|intestinal epithelial structure maintenance|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of ERK1 and ERK2 cascade|negative regulation of interferon-gamma production|negative regulation of interleukin-17 production|negative regulation of interleukin-23 production|negative regulation of interleukin-6 production|negative regulation of osteoclast differentiation|negative regulation of tumor necrosis factor production|positive regulation of chemokine production|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|positive regulation of interferon-gamma production|positive regulation of interleukin-1 production|positive regulation of interleukin-10 production|positive regulation of interleukin-12 biosynthetic process|positive regulation of interleukin-12 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 biosynthetic process|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of platelet activation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor biosynthetic process|positive regulation of tumor necrosis factor production|T-helper 1 type immune response|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	external side of plasma membrane|integral to plasma membrane|lipopolysaccharide receptor complex|perinuclear region of cytoplasm	lipopolysaccharide receptor activity|transmembrane receptor activity			lung(10)|ovary(4)|breast(1)|skin(1)	16						TGAACCCTATGAACTTTATCC	0.348													14	39					0	0	0.001855	0	0
TLR4	7099	broad.mit.edu	37	9	120475867	120475867	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:120475867C>T	uc004bjz.2	+	3	1752	c.1461C>T	c.(1459-1461)TTC>TTT	p.F487F	TLR4_uc004bka.2_Silent_p.F447F|TLR4_uc004bkb.2_Silent_p.F287F	NM_138554	NP_612564	O00206	TLR4_HUMAN	toll-like receptor 4 precursor	487	LRR 15.|Extracellular (Potential).				activation of MAPK activity|cellular response to mechanical stimulus|detection of fungus|detection of lipopolysaccharide|I-kappaB phosphorylation|innate immune response|intestinal epithelial structure maintenance|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of ERK1 and ERK2 cascade|negative regulation of interferon-gamma production|negative regulation of interleukin-17 production|negative regulation of interleukin-23 production|negative regulation of interleukin-6 production|negative regulation of osteoclast differentiation|negative regulation of tumor necrosis factor production|positive regulation of chemokine production|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|positive regulation of interferon-gamma production|positive regulation of interleukin-1 production|positive regulation of interleukin-10 production|positive regulation of interleukin-12 biosynthetic process|positive regulation of interleukin-12 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 biosynthetic process|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of platelet activation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor biosynthetic process|positive regulation of tumor necrosis factor production|T-helper 1 type immune response|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	external side of plasma membrane|integral to plasma membrane|lipopolysaccharide receptor complex|perinuclear region of cytoplasm	lipopolysaccharide receptor activity|transmembrane receptor activity			lung(10)|ovary(4)|breast(1)|skin(1)	16						AGGAAAACTTCCTTCCAGATA	0.448													19	28					0	0	0.006122	0	0
DBC1	1620	broad.mit.edu	37	9	121971125	121971125	+	Silent	SNP	C	T	T	rs12378280		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:121971125C>T	uc004bkc.2	-	7	1473	c.1017G>A	c.(1015-1017)CAG>CAA	p.Q339Q		NM_014618	NP_055433	O60477	DBC1_HUMAN	deleted in bladder cancer 1 precursor	339					cell cycle arrest|cell death	cytoplasm	protein binding			skin(3)|ovary(2)|central_nervous_system(2)|large_intestine(1)	8						TGTAGCGGTTCTGCAGGTCCC	0.547													19	43					0	0	0.008871	0	0
DBC1	1620	broad.mit.edu	37	9	121971207	121971207	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:121971207G>A	uc004bkc.2	-	7	1391	c.935C>T	c.(934-936)TCA>TTA	p.S312L		NM_014618	NP_055433	O60477	DBC1_HUMAN	deleted in bladder cancer 1 precursor	312					cell cycle arrest|cell death	cytoplasm	protein binding			skin(3)|ovary(2)|central_nervous_system(2)|large_intestine(1)	8						CTTCATAAATGATTTAAACTC	0.493													8	31					0	0	0.004482	0	0
TRAF1	7185	broad.mit.edu	37	9	123673735	123673735	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:123673735C>T	uc004bku.1	-	6	1334	c.762G>A	c.(760-762)GAG>GAA	p.E254E	TRAF1_uc011lyg.1_Silent_p.E132E|TRAF1_uc010mvl.1_Silent_p.E254E	NM_005658	NP_005649	Q13077	TRAF1_HUMAN	TNF receptor-associated factor 1	254					apoptosis|positive regulation of NF-kappaB transcription factor activity|protein complex assembly|regulation of apoptosis|signal transduction	cytoplasm	protein binding|zinc ion binding			skin(2)|ovary(1)	3						GCAAGCTCTGCTCCAGCTTGC	0.607													11	34					0	0	0.010729	0	0
C5	727	broad.mit.edu	37	9	123768255	123768255	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:123768255C>T	uc004bkv.2	-	20	2534	c.2504G>A	c.(2503-2505)CGA>CAA	p.R835Q	C5_uc010mvm.1_Missense_Mutation_p.R835Q	NM_001735	NP_001726	P01031	CO5_HUMAN	complement component 5 preproprotein	835					activation of MAPK activity|chemotaxis|complement activation, alternative pathway|complement activation, classical pathway|cytolysis|G-protein coupled receptor protein signaling pathway|inflammatory response|negative regulation of macrophage chemotaxis|positive regulation of chemokine secretion|positive regulation vascular endothelial growth factor production	extracellular space|membrane attack complex	chemokine activity|endopeptidase inhibitor activity			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(323;4.98e-53)|GBM - Glioblastoma multiforme(294;0.0242)	Eculizumab(DB01257)	CTGTTCTCCTCGTACAACAGA	0.388													21	25					0	0	0.010504	0	0
CEP110	11064	broad.mit.edu	37	9	123935993	123935993	+	Missense_Mutation	SNP	G	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:123935993G>T	uc004bkx.1	+	40	6756	c.6725G>T	c.(6724-6726)CGT>CTT	p.R2242L	CEP110_uc004blb.1_Missense_Mutation_p.R911L|CEP110_uc010mvp.1_Missense_Mutation_p.R192L	NM_007018	NP_008949	Q7Z7A1	CNTRL_HUMAN	centrosomal protein 110kDa	2242	Sufficient for interaction with HOOK2.|Potential.				cell division|G2/M transition of mitotic cell cycle	centrosome|cytosol	protein binding				0						GAGAAACTGCGTCACCGGGAA	0.468													13	108					0.000151284	0.000161668	0.001855	1	0
CEP110	11064	broad.mit.edu	37	9	123935995	123935995	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:123935995C>T	uc004bkx.1	+	40	6758	c.6727C>T	c.(6727-6729)CAC>TAC	p.H2243Y	CEP110_uc004blb.1_Missense_Mutation_p.H912Y|CEP110_uc010mvp.1_Missense_Mutation_p.H193Y	NM_007018	NP_008949	Q7Z7A1	CNTRL_HUMAN	centrosomal protein 110kDa	2243	Sufficient for interaction with HOOK2.|Potential.				cell division|G2/M transition of mitotic cell cycle	centrosome|cytosol	protein binding				0						GAAACTGCGTCACCGGGAAGA	0.468													13	106					0	0	0.013537	0	0
DAB2IP	153090	broad.mit.edu	37	9	124535061	124535061	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:124535061C>T	uc004bln.2	+	12	2239	c.2170C>T	c.(2170-2172)CAG>TAG	p.Q724*	DAB2IP_uc004blo.2_Nonsense_Mutation_p.Q628*|DAB2IP_uc004blp.2_Nonsense_Mutation_p.Q157*	NM_032552	NP_115941	Q5VWQ8	DAB2P_HUMAN	disabled homolog 2 interacting protein isoform	752					activation of JUN kinase activity|apoptosis in response to endoplasmic reticulum stress|cellular response to epidermal growth factor stimulus|cellular response to tumor necrosis factor|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of catenin import into nucleus|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of epithelial cell migration|negative regulation of epithelial cell proliferation|negative regulation of epithelial to mesenchymal transition|negative regulation of fibroblast proliferation|negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of MAP kinase activity|negative regulation of NF-kappaB transcription factor activity|negative regulation of Ras GTPase activity|negative regulation of transcription from RNA polymerase II promoter|positive regulation of apoptosis|positive regulation of transcription from RNA polymerase II promoter	cytoplasm|intrinsic to internal side of plasma membrane	14-3-3 protein binding|death receptor binding|mitogen-activated protein kinase kinase kinase binding|protein homodimerization activity|protein phosphatase 2A binding|Ras GTPase activator activity|signaling adaptor activity			ovary(1)|central_nervous_system(1)	2						GGTGGACCTCCAGGACGCCCG	0.692													8	14					0	0	0.003080	0	0
LHX6	26468	broad.mit.edu	37	9	124979471	124979471	+	Silent	SNP	G	A	A	rs116345380	by1000genomes	TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:124979471G>A	uc010mvw.2	-	4	580	c.471C>T	c.(469-471)TTC>TTT	p.F157F	LHX6_uc004blx.3_Silent_p.F186F|LHX6_uc004bly.3_Silent_p.F186F	NM_014368	NP_055183	Q9UPM6	LHX6_HUMAN	LIM homeobox protein 6 isoform 1	157	LIM zinc-binding 2.|Required for interaction with LBD1 (By similarity).				cell maturation|cerebral cortex GABAergic interneuron migration|cerebral cortex radially oriented cell migration|cerebral cortex tangential migration	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						AGAAGCAGGCGAAGCAGGCCA	0.642													9	55					0	0	0.008291	0	0
PTGS1	5742	broad.mit.edu	37	9	125140749	125140749	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:125140749C>T	uc004bmg.1	+	4	384	c.249C>T	c.(247-249)CCC>CCT	p.P83P	PTGS1_uc011lys.1_Silent_p.P58P|PTGS1_uc010mwb.1_5'UTR|PTGS1_uc004bmf.1_Silent_p.P83P|PTGS1_uc004bmh.1_5'UTR|PTGS1_uc011lyt.1_5'UTR	NM_000962	NP_000953	P23219	PGH1_HUMAN	prostaglandin-endoperoxide synthase 1 isoform 1	83					cyclooxygenase pathway|hormone biosynthetic process|regulation of blood pressure|response to oxidative stress|xenobiotic metabolic process	endoplasmic reticulum membrane|Golgi apparatus|microsome|plasma membrane	heme binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peroxidase activity|prostaglandin-endoperoxide synthase activity			ovary(1)|skin(1)	2					Acetaminophen(DB00316)|Aspirin(DB00945)|Balsalazide(DB01014)|Bromfenac(DB00963)|Ciclopirox(DB01188)|Diclofenac(DB00586)|Diflunisal(DB00861)|Dipyrone(DB04817)|Etodolac(DB00749)|Fenoprofen(DB00573)|Flurbiprofen(DB00712)|gamma-Homolinolenic acid(DB00154)|Ibuprofen(DB01050)|Icosapent(DB00159)|Indomethacin(DB00328)|Ketoprofen(DB01009)|Ketorolac(DB00465)|Lumiracoxib(DB01283)|Meclofenamic acid(DB00939)|Mefenamic acid(DB00784)|Mesalazine(DB00244)|Minoxidil(DB00350)|Nabumetone(DB00461)|Naproxen(DB00788)|Phenacetin(DB03783)|Piroxicam(DB00554)|Rofecoxib(DB00533)|Salicyclic acid(DB00936)|Salsalate(DB01399)|Sulindac(DB00605)|Suprofen(DB00870)|Tenoxicam(DB00469)|Tolmetin(DB00500)	CACTGCGGCCCAGCCCCTCTT	0.597													32	81					0	0	0.013726	0	0
OR1J2	26740	broad.mit.edu	37	9	125273488	125273488	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:125273488G>A	uc004bmj.1	+	4	1263	c.408G>A	c.(406-408)ATG>ATA	p.M136I	OR1J2_uc011lyv.1_Missense_Mutation_p.M136I	NM_054107	NP_473448	Q8NGS2	OR1J2_HUMAN	olfactory receptor, family 1, subfamily J,	136	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|pancreas(1)|breast(1)	5						CTGTCATCATGAGGGAAGAGC	0.458													11	30					0	0	0.010729	0	0
OR1L3	26735	broad.mit.edu	37	9	125437963	125437963	+	Silent	SNP	G	A	A	rs141603415		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:125437963G>A	uc011lzb.1	+	1	555	c.555G>A	c.(553-555)CTG>CTA	p.L185L		NM_001005234	NP_001005234	Q8NH93	OR1L3_HUMAN	olfactory receptor, family 1, subfamily L,	185	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.L185L(1)		skin(1)	1						ACCCTGTGCTGAAACTGTCCT	0.448													28	95					0	0	0.006320	0	0
DENND1A	57706	broad.mit.edu	37	9	126144874	126144874	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:126144874G>A	uc004bnz.1	-	22	2100	c.1867C>T	c.(1867-1869)CGC>TGC	p.R623C	DENND1A_uc011lzl.1_Missense_Mutation_p.R441C|DENND1A_uc004bny.1_Missense_Mutation_p.R405C|DENND1A_uc011lzm.1_Missense_Mutation_p.R634C|DENND1A_uc010mwh.1_Missense_Mutation_p.R44C	NM_020946	NP_065997	Q8TEH3	DEN1A_HUMAN	DENN/MADD domain containing 1A isoform 1	623						cell junction|clathrin coated vesicle membrane|presynaptic membrane	guanyl-nucleotide exchange factor activity			ovary(2)	2						GTCACCCCGCGGCTCCTCTCA	0.642													11	35					0	0	0.013537	0	0
NR6A1	2649	broad.mit.edu	37	9	127316765	127316765	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:127316765G>A	uc004bor.1	-	3	405	c.227C>T	c.(226-228)TCC>TTC	p.S76F	NR6A1_uc004boq.1_Missense_Mutation_p.S72F|NR6A1_uc010mwq.1_Missense_Mutation_p.S72F	NM_033334	NP_201591	Q15406	NR6A1_HUMAN	nuclear receptor subfamily 6, group A, member 1	76	Nuclear receptor.|NR C4-type.				cell proliferation|negative regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|spermatogenesis	transcription factor complex	protein homodimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(3)	3						GCCCTCACAGGAGATGATCCC	0.493													26	52					0	0	0.008361	0	0
RPL35	11224	broad.mit.edu	37	9	127620225	127620225	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:127620225G>A	uc004boy.1	-	4	393	c.344C>T	c.(343-345)CCG>CTG	p.P115L		NM_007209	NP_009140	P42766	RL35_HUMAN	ribosomal protein L35	115					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosolic large ribosomal subunit|nucleolus	mRNA binding|protein binding|structural constituent of ribosome			ovary(1)	1				GBM - Glioblastoma multiforme(294;0.182)		CTTCCGCAGCGGGTACAGCCG	0.592													10	25					0	0	0.008291	0	0
GOLGA1	2800	broad.mit.edu	37	9	127651553	127651553	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:127651553G>A	uc004bpc.2	-	18	1972	c.1630C>T	c.(1630-1632)CAG>TAG	p.Q544*	GOLGA1_uc010mws.2_RNA	NM_002077	NP_002068	Q92805	GOGA1_HUMAN	golgin 97	544	Potential.|Gln-rich.					Golgi cisterna membrane				ovary(1)	1						GCCTGCAGCTGGTGTATCTGC	0.667													8	24					0	0	0.006214	0	0
SCAI	286205	broad.mit.edu	37	9	127762192	127762192	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:127762192G>A	uc004bpe.2	-	13	1303	c.1222C>T	c.(1222-1224)CAG>TAG	p.Q408*	SCAI_uc004bpd.2_Nonsense_Mutation_p.Q431*|SCAI_uc010mwu.2_RNA	NM_001144877	NP_001138349	Q8N9R8	SCAI_HUMAN	suppressor of cancer cell invasion isoform 2	408					negative regulation of cell migration|negative regulation of Rho protein signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|integral to membrane|nucleus	protein binding|transcription corepressor activity			ovary(2)|breast(2)|central_nervous_system(1)	5						TTGTGGGACTGATTTCGTTTG	0.328													46	85					0	0	0.014410	0	0
PPP6C	5537	broad.mit.edu	37	9	127915938	127915938	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:127915938C>T	uc004bpg.3	-	6	764	c.543G>A	c.(541-543)CGG>CGA	p.R181R	PPP6C_uc010mwv.2_Silent_p.R218R|PPP6C_uc010mww.2_Silent_p.R159R|PPP6C_uc011lzr.1_Silent_p.R34R	NM_002721	NP_002712	O00743	PPP6_HUMAN	protein phosphatase 6, catalytic subunit isoform	181					G1/S transition of mitotic cell cycle|protein dephosphorylation	cytosol	metal ion binding|protein binding|protein serine/threonine phosphatase activity			ovary(1)|skin(1)	2						TTTCCTGATTCCGTTCGATGG	0.428													9	20					0	0	0.004482	0	0
GAPVD1	26130	broad.mit.edu	37	9	128086088	128086088	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:128086088C>T	uc010mwx.2	+	11	2070	c.1744C>T	c.(1744-1746)CGC>TGC	p.R582C	GAPVD1_uc011lzs.1_Missense_Mutation_p.R582C|GAPVD1_uc004bpp.2_Missense_Mutation_p.R582C|GAPVD1_uc004bpq.2_Missense_Mutation_p.R582C|GAPVD1_uc004bpr.2_Missense_Mutation_p.R561C|GAPVD1_uc004bps.2_Missense_Mutation_p.R582C|GAPVD1_uc010mwy.1_Missense_Mutation_p.R441C	NM_015635	NP_056450	Q14C86	GAPD1_HUMAN	GTPase activating protein and VPS9 domains 1	582					endocytosis|regulation of protein transport|regulation of small GTPase mediated signal transduction|signal transduction	cytosol|endosome|membrane	GTPase activating protein binding|GTPase activator activity|guanyl-nucleotide exchange factor activity			ovary(2)|central_nervous_system(1)|skin(1)	4						TCCTTCAAATCGCTCCAATTC	0.423													7	12					0	0	0.006214	0	0
GARNL3	84253	broad.mit.edu	37	9	130117638	130117638	+	Missense_Mutation	SNP	C	T	T	rs145626536	byFrequency	TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:130117638C>T	uc011mae.1	+	20	2223	c.1822C>T	c.(1822-1824)CGG>TGG	p.R608W	GARNL3_uc011mad.1_Missense_Mutation_p.R586W|GARNL3_uc010mxi.2_5'UTR	NM_032293	NP_115669	Q5VVW2	GARL3_HUMAN	GTPase activating Rap/RanGAP domain-like 3	608	CNH.				regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity|small GTPase regulator activity			ovary(1)|central_nervous_system(1)|skin(1)	3						GGTTGCAATTCGGAATAAACT	0.468													47	171					0	0	0.014410	0	0
SH2D3C	10044	broad.mit.edu	37	9	130502567	130502567	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:130502567G>A	uc004bsc.2	-	10	2312	c.2170C>T	c.(2170-2172)CCT>TCT	p.P724S	SH2D3C_uc010mxo.2_Missense_Mutation_p.P564S|SH2D3C_uc004bry.2_Missense_Mutation_p.P566S|SH2D3C_uc004brz.3_Missense_Mutation_p.P370S|SH2D3C_uc011mak.1_Missense_Mutation_p.P370S|SH2D3C_uc004bsa.2_Missense_Mutation_p.P567S|SH2D3C_uc004bsb.2_Missense_Mutation_p.P656S	NM_170600	NP_733745	Q8N5H7	SH2D3_HUMAN	SH2 domain containing 3C isoform a	724	Ras-GEF.				JNK cascade|small GTPase mediated signal transduction	cytoplasm|membrane	guanyl-nucleotide exchange factor activity|SH3/SH2 adaptor activity			ovary(1)	1						TTGAGAAAAGGCTTGAGCTTC	0.577													7	47					0	0	0.003080	0	0
SPTAN1	6709	broad.mit.edu	37	9	131390214	131390214	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:131390214C>T	uc004bvl.3	+	50	6798	c.6685C>T	c.(6685-6687)CTC>TTC	p.L2229F	SPTAN1_uc004bvm.3_Missense_Mutation_p.L2234F|SPTAN1_uc004bvn.3_Missense_Mutation_p.L2209F|SPTAN1_uc010mye.1_3'UTR|SPTAN1_uc010myf.1_Missense_Mutation_p.L58F|SPTAN1_uc004bvo.3_5'Flank	NM_003127	NP_003118	Q13813	SPTA2_HUMAN	spectrin, alpha, non-erythrocytic 1	2229	Spectrin 23.				actin filament capping|axon guidance|cellular component disassembly involved in apoptosis	cytosol|intracellular membrane-bounded organelle|membrane fraction|microtubule cytoskeleton|spectrin	actin binding|calcium ion binding|calmodulin binding|structural constituent of cytoskeleton			breast(5)|ovary(4)|pancreas(1)	10						GACATACCTCCTCGATGGGTT	0.567													67	275					0	0	0.014410	0	0
NUP188	23511	broad.mit.edu	37	9	131745227	131745227	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:131745227C>T	uc004bws.1	+	17	1738	c.1716C>T	c.(1714-1716)GTC>GTT	p.V572V	NUP188_uc004bwu.2_5'Flank	NM_015354	NP_056169	Q5SRE5	NU188_HUMAN	nucleoporin 188kDa	572					carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	nuclear pore	protein binding			ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)|kidney(1)|breast(1)	7						TTGATCTCGTCCATAAGGTCA	0.507													40	62					0	0	0.007835	0	0
FAM73B	84895	broad.mit.edu	37	9	131802941	131802941	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:131802941C>T	uc004bxa.2	+	2	254	c.68C>T	c.(67-69)CCC>CTC	p.P23L	FAM73B_uc004bwy.2_RNA|FAM73B_uc004bwz.2_RNA|FAM73B_uc011mbn.1_Missense_Mutation_p.P23L	NM_032809	NP_116198	Q7L4E1	FA73B_HUMAN	hypothetical protein LOC84895	23	Helical; (Potential).					integral to membrane				skin(1)	1						GCCGAGATCCCCGTGTTCCTG	0.612													8	55					0	0	0.013537	0	0
GPR107	57720	broad.mit.edu	37	9	132862932	132862932	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:132862932C>T	uc004bze.2	+	11	1191	c.964C>T	c.(964-966)CAG>TAG	p.Q322*	GPR107_uc004bzb.2_Nonsense_Mutation_p.Q133*|GPR107_uc004bzc.3_RNA|GPR107_uc011mbx.1_Nonsense_Mutation_p.Q322*|GPR107_uc004bzd.2_Nonsense_Mutation_p.Q322*	NM_001136557	NP_001130029	Q5VW38	GP107_HUMAN	G protein-coupled receptor 107 isoform 1	322						integral to membrane				upper_aerodigestive_tract(1)	1		Ovarian(14;0.000531)				CATCTCCTCCCAGGGCTTCCC	0.418													19	55					0	0	0.002780	0	0
BAT2L1	84726	broad.mit.edu	37	9	134342990	134342990	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:134342990C>T	uc004can.3	+	12	1816	c.1761C>T	c.(1759-1761)TTC>TTT	p.F587F	BAT2L1_uc010mzj.1_Silent_p.F170F	NM_013318	NP_037450	Q5JSZ5	PRC2B_HUMAN	HLA-B associated transcript 2-like	587							protein binding				0						CCACCACATTCCCAGAAGAGG	0.562													7	4					0	0	0.003080	0	0
POMT1	10585	broad.mit.edu	37	9	134385753	134385753	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:134385753C>T	uc004cav.2	+	9	1074	c.872C>T	c.(871-873)TCT>TTT	p.S291F	POMT1_uc011mci.1_3'UTR|POMT1_uc004cax.2_Missense_Mutation_p.S269F|POMT1_uc011mcj.1_Missense_Mutation_p.S47F|POMT1_uc004cau.2_Missense_Mutation_p.S269F|POMT1_uc004caw.2_Missense_Mutation_p.S215F|POMT1_uc011mck.1_Missense_Mutation_p.S152F|POMT1_uc011mcl.1_Missense_Mutation_p.S117F|POMT1_uc011mcm.1_Missense_Mutation_p.S239F|POMT1_uc011mcn.1_5'UTR	NM_007171	NP_009102	Q9Y6A1	POMT1_HUMAN	protein-O-mannosyltransferase 1 isoform a	291					multicellular organismal development|protein O-linked glycosylation	endoplasmic reticulum membrane|integral to membrane	dolichyl-phosphate-mannose-protein mannosyltransferase activity|metal ion binding			upper_aerodigestive_tract(1)	1		Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;2.65e-05)|Epithelial(140;0.000259)		GTCTTCCGCTCTGGGCCCCAC	0.542													18	31					0	0	0.014323	0	0
C9orf98	158067	broad.mit.edu	37	9	135704092	135704092	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:135704092G>A	uc004cbu.1	-	6	980	c.424C>T	c.(424-426)CCT>TCT	p.P142S	C9orf98_uc010mzx.1_RNA|C9orf98_uc004cbv.1_5'UTR	NM_152572	NP_689785	Q96MA6	KAD8_HUMAN	putative adenylate kinase-like protein C9orf98	142						cytosol	adenylate kinase activity|ATP binding|cytidylate kinase activity				0				OV - Ovarian serous cystadenocarcinoma(145;4.89e-06)|Epithelial(140;0.00016)		CGCGTCTCAGGGATGCCATCC	0.493													3	17					0	0	0.004672	0	0
CEL	1056	broad.mit.edu	37	9	135946024	135946024	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:135946024G>A	uc010naa.1	+	10	1488	c.1472G>A	c.(1471-1473)TGG>TAG	p.W491*		NM_001807	NP_001798	P19835	CEL_HUMAN	carboxyl ester lipase precursor	488					cholesterol catabolic process|fatty acid catabolic process|intestinal cholesterol absorption|intestinal lipid catabolic process|pancreatic juice secretion|protein esterification	cytosol|extracellular space	acylglycerol lipase activity|carboxylesterase activity|heparin binding|sterol esterase activity|triglyceride lipase activity			pancreas(1)	1				OV - Ovarian serous cystadenocarcinoma(145;1.03e-40)|Epithelial(140;3.58e-37)|GBM - Glioblastoma multiforme(294;0.00164)|READ - Rectum adenocarcinoma(205;0.196)		ATCGCCTACTGGACCAACTTT	0.532													144	220					0	0	0.014410	0	0
ADAMTS13	11093	broad.mit.edu	37	9	136307852	136307852	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:136307852C>T	uc004cdv.3	+	18	2666	c.2222C>T	c.(2221-2223)CCC>CTC	p.P741L	ADAMTS13_uc004cdp.3_Intron|ADAMTS13_uc004cdt.1_Missense_Mutation_p.P741L|ADAMTS13_uc004cdu.1_Missense_Mutation_p.P710L|ADAMTS13_uc004cdw.3_Missense_Mutation_p.P741L|ADAMTS13_uc004cdx.3_Missense_Mutation_p.P710L|ADAMTS13_uc004cdy.1_Intron|ADAMTS13_uc004cdz.3_Missense_Mutation_p.P411L|ADAMTS13_uc004cds.1_Missense_Mutation_p.P266L|ADAMTS13_uc004cdr.1_Intron	NM_139025	NP_620594	Q76LX8	ATS13_HUMAN	ADAM metallopeptidase with thrombospondin type 1	741					cell-matrix adhesion|glycoprotein metabolic process|integrin-mediated signaling pathway|peptide catabolic process|platelet activation|protein processing|proteolysis	cell surface|proteinaceous extracellular matrix	calcium ion binding|integrin binding|metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|skin(2)|ovary(1)|kidney(1)	6				OV - Ovarian serous cystadenocarcinoma(145;1.06e-07)|Epithelial(140;1.28e-06)|all cancers(34;1.46e-05)		GTGCTCGAACCCTGCCCTCCC	0.652													6	27					0	0	0.001984	0	0
ADAMTS13	11093	broad.mit.edu	37	9	136315040	136315040	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:136315040C>T	uc004cdv.3	+	23	3442	c.2998C>T	c.(2998-3000)CGC>TGC	p.R1000C	ADAMTS13_uc004cdp.3_Missense_Mutation_p.R227C|ADAMTS13_uc004cdt.1_Missense_Mutation_p.R1000C|ADAMTS13_uc004cdu.1_Missense_Mutation_p.R969C|ADAMTS13_uc004cdw.3_Missense_Mutation_p.R1000C|ADAMTS13_uc004cdx.3_Missense_Mutation_p.R969C|ADAMTS13_uc004cdy.1_RNA|ADAMTS13_uc004cdz.3_Missense_Mutation_p.R670C	NM_139025	NP_620594	Q76LX8	ATS13_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1000	TSP type-1 6.				cell-matrix adhesion|glycoprotein metabolic process|integrin-mediated signaling pathway|peptide catabolic process|platelet activation|protein processing|proteolysis	cell surface|proteinaceous extracellular matrix	calcium ion binding|integrin binding|metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|skin(2)|ovary(1)|kidney(1)	6				OV - Ovarian serous cystadenocarcinoma(145;1.06e-07)|Epithelial(140;1.28e-06)|all cancers(34;1.46e-05)		GGGGCTGCCTCGCCCGGAACC	0.662													8	19					0	0	0.003080	0	0
ADAMTSL2	9719	broad.mit.edu	37	9	136412220	136412220	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:136412220A>G	uc011mdl.1	+	9	1381	c.824A>G	c.(823-825)AAG>AGG	p.K275R	ADAMTSL2_uc004cei.2_Missense_Mutation_p.K275R	NM_001145320	NP_001138792	Q86TH1	ATL2_HUMAN	ADAMTS-like 2 precursor	275					negative regulation of transforming growth factor beta receptor signaling pathway	proteinaceous extracellular matrix	metalloendopeptidase activity|protein binding|zinc ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(145;9.31e-08)|Epithelial(140;6.62e-07)|all cancers(34;7.74e-06)		GACAGCCCCAAGAACTTCAAC	0.567													25	146					0	0	0.003755	0	0
SARDH	1757	broad.mit.edu	37	9	136599120	136599120	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:136599120G>A	uc004cep.3	-	2	310	c.176C>T	c.(175-177)CCA>CTA	p.P59L	SARDH_uc004ceo.2_Missense_Mutation_p.P59L|SARDH_uc011mdn.1_Missense_Mutation_p.P59L|SARDH_uc011mdo.1_Intron	NM_001134707	NP_001128179	Q9UL12	SARDH_HUMAN	sarcosine dehydrogenase precursor	59					glycine catabolic process	mitochondrial matrix	aminomethyltransferase activity|sarcosine dehydrogenase activity				0				OV - Ovarian serous cystadenocarcinoma(145;3.21e-07)|Epithelial(140;2.37e-06)|all cancers(34;2.75e-05)		GGGCCGGCTTGGGCCTTGGGC	0.667													9	30					0	0	0.013537	0	0
COL5A1	1289	broad.mit.edu	37	9	137619121	137619121	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:137619121C>T	uc004cfe.2	+	5	1046	c.664C>T	c.(664-666)CAG>TAG	p.Q222*		NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	222	TSP N-terminal.|Laminin G-like.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		GGGTGACATCCAGCAGCTGCT	0.567													19	85					0	0	0.014323	0	0
COL5A1	1289	broad.mit.edu	37	9	137645726	137645726	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:137645726G>A	uc004cfe.2	+	15	2132	c.1750G>A	c.(1750-1752)GAG>AAG	p.E584K		NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	584	Triple-helical region.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		TTTGAAGGGCGAGCCGGGAGA	0.652													9	56					0	0	0.008291	0	0
COL5A1	1289	broad.mit.edu	37	9	137687129	137687129	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:137687129C>T	uc004cfe.2	+	34	3149	c.2767C>T	c.(2767-2769)CCC>TCC	p.P923S		NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	923	Triple-helical region.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		TGAAAGAGGCCCCCGGGGCAT	0.637													11	75					0	0	0.013537	0	0
COL5A1	1289	broad.mit.edu	37	9	137697046	137697046	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:137697046C>T	uc004cfe.2	+	41	3626	c.3244C>T	c.(3244-3246)CCA>TCA	p.P1082S		NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	1082	Triple-helical region.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		GCCCCCTGGCCCACCAGGCCC	0.597													11	55					0	0	0.001855	0	0
COL5A1	1289	broad.mit.edu	37	9	137702112	137702112	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:137702112G>A	uc004cfe.2	+	44	3868	c.3486G>A	c.(3484-3486)GGG>GGA	p.G1162G		NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	1162	Triple-helical region.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		GAGAGATCGGGGAGCCGGGGC	0.582													19	49					0	0	0.002780	0	0
FCN2	2220	broad.mit.edu	37	9	137772724	137772724	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:137772724C>T	uc004cfg.1	+	1	67	c.57C>T	c.(55-57)TTC>TTT	p.F19F	FCN2_uc004cfh.1_Silent_p.F19F	NM_004108	NP_004099	Q15485	FCN2_HUMAN	ficolin 2 isoform a precursor	19					complement activation, lectin pathway|opsonization|signal transduction	collagen|extracellular space	antigen binding|calcium ion binding|calcium-dependent protein binding|receptor binding|sugar binding			large_intestine(1)	1		Myeloproliferative disorder(178;0.0333)		OV - Ovarian serous cystadenocarcinoma(145;3.58e-08)|Epithelial(140;6.41e-08)|all cancers(34;3.96e-07)		TGCTCTCTTTCCTGGGCATGG	0.612													11	43					0	0	0.010729	0	0
FCN2	2220	broad.mit.edu	37	9	137779114	137779114	+	Missense_Mutation	SNP	G	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:137779114G>C	uc004cfg.1	+	8	805	c.795G>C	c.(793-795)TGG>TGC	p.W265C	FCN2_uc004cfh.1_Missense_Mutation_p.W227C	NM_004108	NP_004099	Q15485	FCN2_HUMAN	ficolin 2 isoform a precursor	265	Fibrinogen C-terminal.				complement activation, lectin pathway|opsonization|signal transduction	collagen|extracellular space	antigen binding|calcium ion binding|calcium-dependent protein binding|receptor binding|sugar binding			large_intestine(1)	1		Myeloproliferative disorder(178;0.0333)		OV - Ovarian serous cystadenocarcinoma(145;3.58e-08)|Epithelial(140;6.41e-08)|all cancers(34;3.96e-07)		AGGGAGCTTGGTGGTACAAAA	0.493													3	75					0	0	0.004672	0	0
OBP2A	29991	broad.mit.edu	37	9	138441153	138441153	+	Splice_Site	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:138441153G>A	uc004cgb.2	+	6	533	c.491_splice	c.e6-1	p.G164_splice	OBP2A_uc004cgc.2_Splice_Site_p.E186_splice|OBP2A_uc010nau.2_Splice_Site|OBP2A_uc010nav.2_Splice_Site_p.G141_splice	NM_014582	NP_055397	Q9NY56	OBP2A_HUMAN	odorant binding protein 2A precursor						response to stimulus|sensory perception of smell	extracellular region	odorant binding|transporter activity				0				OV - Ovarian serous cystadenocarcinoma(145;3.39e-07)|Epithelial(140;1.11e-06)|all cancers(34;2.04e-05)		GGTCTCTGCAGGAAGCTGCGT	0.537													23	101					0	0	0.005443	0	0
LCN9	392399	broad.mit.edu	37	9	138555245	138555245	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:138555245G>A	uc004cgk.1	+	1	78	c.78G>A	c.(76-78)AGG>AGA	p.R26R		NM_001001676	NP_001001676	Q8WX39	LCN9_HUMAN	lipocalin 9	26						extracellular region	pheromone binding|transporter activity			large_intestine(2)	2		Myeloproliferative disorder(178;0.0821)		OV - Ovarian serous cystadenocarcinoma(145;3.43e-07)|Epithelial(140;1.97e-06)|all cancers(34;6.1e-05)		TTATGCAGAGGAACTACAACG	0.632													14	23					0	0	0.004990	0	0
LCN9	392399	broad.mit.edu	37	9	138556077	138556077	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:138556077C>T	uc004cgk.1	+	2	166	c.166C>T	c.(166-168)CTG>TTG	p.L56L		NM_001001676	NP_001001676	Q8WX39	LCN9_HUMAN	lipocalin 9	56						extracellular region	pheromone binding|transporter activity			large_intestine(2)	2		Myeloproliferative disorder(178;0.0821)		OV - Ovarian serous cystadenocarcinoma(145;3.43e-07)|Epithelial(140;1.97e-06)|all cancers(34;6.1e-05)		AAATGGAGACCTGAGGGTCTT	0.473													22	43					0	0	0.002780	0	0
KCNT1	57582	broad.mit.edu	37	9	138683979	138683979	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:138683979C>T	uc011mdq.1	+	31	3754	c.3680C>T	c.(3679-3681)CCC>CTC	p.P1227L	KCNT1_uc011mdr.1_Missense_Mutation_p.P1075L|KCNT1_uc010nbf.2_Missense_Mutation_p.P1203L	NM_020822	NP_065873	Q5JUK3	KCNT1_HUMAN	potassium channel, subfamily T, member 1	1227						membrane	binding|calcium-activated potassium channel activity			large_intestine(2)|ovary(1)|pancreas(1)	4		Myeloproliferative disorder(178;0.0821)		OV - Ovarian serous cystadenocarcinoma(145;2.11e-07)|Epithelial(140;1.57e-06)|all cancers(34;9.22e-05)		TCCTGCAACCCCGAGACTCGC	0.667													5	11					0	0	0.000602	0	0
GPSM1	26086	broad.mit.edu	37	9	139232392	139232392	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:139232392C>T	uc004chd.2	+	6	1012	c.792C>T	c.(790-792)CGC>CGT	p.R264R	GPSM1_uc004chc.2_Silent_p.R264R	NM_001145638	NP_001139110	Q86YR5	GPSM1_HUMAN	G-protein signaling modulator 1 (AGS3-like, C.	264	Mediates association with membranes (By similarity).|TPR 7.				cell differentiation|nervous system development|signal transduction	cytosol|endoplasmic reticulum membrane|Golgi membrane|plasma membrane	binding|GTPase activator activity				0		Myeloproliferative disorder(178;0.0821)		OV - Ovarian serous cystadenocarcinoma(145;2.39e-06)|Epithelial(140;3.24e-06)		TCCTGGGGCGCTTTGACGTGG	0.647													11	29					0	0	0.010729	0	0
SEC16A	9919	broad.mit.edu	37	9	139345853	139345853	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:139345853G>A	uc004chx.2	-	23	6476	c.6167C>T	c.(6166-6168)TCG>TTG	p.S2056L	SEC16A_uc004chr.2_5'Flank|SEC16A_uc004chs.2_5'UTR|SEC16A_uc004cht.2_Missense_Mutation_p.S87L|SEC16A_uc004chu.2_Missense_Mutation_p.S241L|SEC16A_uc004chv.3_Missense_Mutation_p.S1446L|SEC16A_uc004chw.2_Missense_Mutation_p.S2056L|SEC16A_uc010nbn.2_Missense_Mutation_p.S2056L	NM_014866	NP_055681	O15027	SC16A_HUMAN	SEC16 homolog A	1878	Pro-rich.				protein transport|vesicle-mediated transport	endoplasmic reticulum membrane|Golgi membrane					0		Myeloproliferative disorder(178;0.0511)		Epithelial(140;2.9e-06)|OV - Ovarian serous cystadenocarcinoma(145;5.88e-06)		CACCGTCCTCGAGGGGGTCTG	0.627													6	38					0	0	0.001168	0	0
LCN12	286256	broad.mit.edu	37	9	139846814	139846814	+	Missense_Mutation	SNP	C	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:139846814C>G	uc004ckb.2	+	1	47	c.35C>G	c.(34-36)TCC>TGC	p.S12C	LCN12_uc004ckc.2_Missense_Mutation_p.S12C	NM_178536	NP_848631	Q6JVE5	LCN12_HUMAN	lipocalcin 12 precursor	12					lipid metabolic process	extracellular region	binding|transporter activity				0	all_cancers(76;0.11)	Myeloproliferative disorder(178;0.0511)	STAD - Stomach adenocarcinoma(284;0.19)	OV - Ovarian serous cystadenocarcinoma(145;7.8e-06)|Epithelial(140;0.000106)		CTGTGGCTCTCCTTGCTGAAA	0.632													6	16					0	0	0.001168	0	0
ENTPD2	954	broad.mit.edu	37	9	139945719	139945719	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:139945719C>T	uc004ckw.1	-	4	546	c.490G>A	c.(490-492)GAA>AAA	p.E164K	ENTPD2_uc004ckv.1_5'Flank|ENTPD2_uc004ckx.1_Missense_Mutation_p.E164K	NM_203468	NP_982293	Q9Y5L3	ENTP2_HUMAN	ectonucleoside triphosphate diphosphohydrolase 2	164	Extracellular (Potential).					integral to membrane	ATP binding				0	all_cancers(76;0.0926)	Myeloproliferative disorder(178;0.0511)	STAD - Stomach adenocarcinoma(284;0.123)	OV - Ovarian serous cystadenocarcinoma(145;2.94e-05)|Epithelial(140;0.00048)		ACCCCCTCTTCCTGGCCCGAG	0.627													18	64					0	0	0.014323	0	0
ANAPC2	29882	broad.mit.edu	37	9	140074659	140074659	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:140074659A>G	uc004clr.1	-	10	1937	c.1864T>C	c.(1864-1866)TAC>CAC	p.Y622H	ANAPC2_uc004clq.1_Missense_Mutation_p.Y478H	NM_013366	NP_037498	Q9UJX6	ANC2_HUMAN	anaphase-promoting complex subunit 2	622					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|cyclin catabolic process|mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of synapse maturation|positive regulation of synaptic plasticity|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination|regulation of cyclin-dependent protein kinase activity	anaphase-promoting complex|cytosol|nucleoplasm	ubiquitin protein ligase binding|ubiquitin-protein ligase activity			ovary(1)	1	all_cancers(76;0.0926)		STAD - Stomach adenocarcinoma(284;0.0698)	OV - Ovarian serous cystadenocarcinoma(145;6.37e-05)|Epithelial(140;0.000858)		TTCTTGCAGTAAGCCTCCAGG	0.622													5	39					0	0	0.003080	0	0
PNPLA7	375775	broad.mit.edu	37	9	140437926	140437926	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:140437926G>A	uc004cnf.2	-	5	726	c.389C>T	c.(388-390)TCT>TTT	p.S130F	PNPLA7_uc010ncj.1_Missense_Mutation_p.S155F	NM_152286	NP_689499	Q6ZV29	PLPL7_HUMAN	patatin-like phospholipase domain containing 7	130					lipid metabolic process	endoplasmic reticulum|integral to membrane|lysosomal membrane|microsome|mitochondrial membrane|nuclear membrane	hydrolase activity			skin(1)	1	all_cancers(76;0.126)			OV - Ovarian serous cystadenocarcinoma(145;0.000268)|Epithelial(140;0.000839)		TGGCAGGTGAGAATTCTTCAC	0.612													31	69					0	0	0.003271	0	0
EHMT1	79813	broad.mit.edu	37	9	140708909	140708909	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:140708909C>T	uc011mfc.1	+	22	3244	c.3207C>T	c.(3205-3207)TCC>TCT	p.S1069S	EHMT1_uc004coe.2_5'Flank	NM_024757	NP_079033	Q9H9B1	EHMT1_HUMAN	euchromatic histone-lysine N-methyltransferase 1	1069	Pre-SET.				DNA methylation|embryo development|peptidyl-lysine dimethylation|peptidyl-lysine monomethylation	chromosome|nucleus	histone methyltransferase activity (H3-K27 specific)|histone methyltransferase activity (H3-K9 specific)|p53 binding|zinc ion binding			breast(2)|pancreas(1)	3	all_cancers(76;0.164)			OV - Ovarian serous cystadenocarcinoma(145;0.000183)|Epithelial(140;0.000728)		ACGACTGCTCCTCCAGCAACT	0.632													29	80					0	0	0.003755	0	0
CACNA1B	774	broad.mit.edu	37	9	140777318	140777318	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:140777318C>T	uc004cog.2	+	3	658	c.513C>T	c.(511-513)TTC>TTT	p.F171F	uc004cof.1_RNA	NM_000718	NP_000709	Q00975	CAC1B_HUMAN	calcium channel, voltage-dependent, N type,	171	Helical; Name=S3 of repeat I; (Potential).|I.				membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	ATP binding|protein C-terminus binding|voltage-gated calcium channel activity			breast(3)|large_intestine(2)|ovary(1)	6	all_cancers(76;0.166)			OV - Ovarian serous cystadenocarcinoma(145;1.16e-05)|Epithelial(140;0.000476)	Amlodipine(DB00381)|Gabapentin(DB00996)	TCATGGACTTCGTGGTCGTCC	0.607													35	228					0	0	0.010771	0	0
CACNA1B	774	broad.mit.edu	37	9	140953602	140953602	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:140953602C>T	uc004cog.2	+	30	4690	c.4545C>T	c.(4543-4545)TCC>TCT	p.S1515S	CACNA1B_uc011mfd.1_Silent_p.S1045S|CACNA1B_uc004coi.2_Silent_p.S729S	NM_000718	NP_000709	Q00975	CAC1B_HUMAN	calcium channel, voltage-dependent, N type,	1515	Helical; Name=S2 of repeat IV; (Potential).|IV.				membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	ATP binding|protein C-terminus binding|voltage-gated calcium channel activity			breast(3)|large_intestine(2)|ovary(1)	6	all_cancers(76;0.166)			OV - Ovarian serous cystadenocarcinoma(145;1.16e-05)|Epithelial(140;0.000476)	Amlodipine(DB00381)|Gabapentin(DB00996)	CCATGTTCTCCATGGAATGCG	0.502													19	11					0	0	0.003954	0	0
CACNA1B	774	broad.mit.edu	37	9	141010045	141010045	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:141010045G>A	uc004cog.2	+	41	5836	c.5691G>A	c.(5689-5691)CTG>CTA	p.L1897L	CACNA1B_uc004coi.2_Silent_p.L1109L	NM_000718	NP_000709	Q00975	CAC1B_HUMAN	calcium channel, voltage-dependent, N type,	1897	Cytoplasmic (Potential).				membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	ATP binding|protein C-terminus binding|voltage-gated calcium channel activity			breast(3)|large_intestine(2)|ovary(1)	6	all_cancers(76;0.166)			OV - Ovarian serous cystadenocarcinoma(145;1.16e-05)|Epithelial(140;0.000476)	Amlodipine(DB00381)|Gabapentin(DB00996)	AGGCCACCCTGGAGCAGACAC	0.592													10	115					0	0	0.013537	0	0
CACNA1B	774	broad.mit.edu	37	9	141010047	141010047	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:141010047A>G	uc004cog.2	+	41	5838	c.5693A>G	c.(5692-5694)GAG>GGG	p.E1898G	CACNA1B_uc004coi.2_Missense_Mutation_p.E1110G	NM_000718	NP_000709	Q00975	CAC1B_HUMAN	calcium channel, voltage-dependent, N type,	1898	Cytoplasmic (Potential).				membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	ATP binding|protein C-terminus binding|voltage-gated calcium channel activity			breast(3)|large_intestine(2)|ovary(1)	6	all_cancers(76;0.166)			OV - Ovarian serous cystadenocarcinoma(145;1.16e-05)|Epithelial(140;0.000476)	Amlodipine(DB00381)|Gabapentin(DB00996)	GCCACCCTGGAGCAGACACAG	0.597													12	110					0	0	0.002450	0	0
CSF2RA	1438	broad.mit.edu	37	X	1428348	1428348	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:1428348C>T	uc010nct.2	+	14	1501	c.1179C>T	c.(1177-1179)GTC>GTT	p.V393V	CSF2RA_uc004cpq.2_3'UTR|CSF2RA_uc004cpn.2_Silent_p.V393V|CSF2RA_uc004cpo.2_Silent_p.V393V|CSF2RA_uc010ncu.2_RNA|CSF2RA_uc011mhc.1_Silent_p.V260V|CSF2RA_uc004cpp.2_Missense_Mutation_p.L334F|CSF2RA_uc010ncv.2_Silent_p.V427V|CSF2RA_uc004cpr.2_3'UTR	NM_001161529	NP_001155001	P15509	CSF2R_HUMAN	colony stimulating factor 2 receptor alpha chain	393	Cytoplasmic (Potential).					extracellular region|integral to plasma membrane	cytokine receptor activity			ovary(2)	2		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)			Sargramostim(DB00020)	GCGAAGAGGTCTTGACCGTGA	0.537													65	59					0	0	0.014410	0	0
ARSD	414	broad.mit.edu	37	X	2827940	2827940	+	Missense_Mutation	SNP	G	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:2827940G>C	uc004cqy.2	-	8	1292	c.1216C>G	c.(1216-1218)CGA>GGA	p.R406G	ARSD_uc004cqz.1_Intron	NM_001669	NP_001660	P51689	ARSD_HUMAN	arylsulfatase D isoform a precursor	406						lysosome	arylsulfatase activity|metal ion binding				0		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				CCAATCACTCGGCCGGCCGGG	0.637													9	17					0	0	0.006214	0	0
MXRA5	25878	broad.mit.edu	37	X	3235908	3235908	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:3235908C>T	uc004crg.3	-	6	5971	c.5814G>A	c.(5812-5814)AGG>AGA	p.R1938R		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	1938	Ig-like C2-type 3.					extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				AGACCACCATCCTGTCCAGGC	0.532													38	13					0	0	0.009718	0	0
MXRA5	25878	broad.mit.edu	37	X	3238430	3238430	+	Missense_Mutation	SNP	G	A	A	rs34070401		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:3238430G>A	uc004crg.3	-	5	5453	c.5296C>T	c.(5296-5298)CCA>TCA	p.P1766S		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	1766						extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				TAGGAACCTGGAATAACTTTT	0.522													18	11					0	0	0.012319	0	0
MXRA5	25878	broad.mit.edu	37	X	3240208	3240208	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:3240208G>A	uc004crg.3	-	5	3675	c.3518C>T	c.(3517-3519)ACT>ATT	p.T1173I		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	1173						extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				TGGGGCAAAAGTTGTGGGTGG	0.507													51	29					0	0	0.014410	0	0
MXRA5	25878	broad.mit.edu	37	X	3240982	3240982	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:3240982G>A	uc004crg.3	-	5	2901	c.2744C>T	c.(2743-2745)TCT>TTT	p.S915F		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	915						extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				ATAAGGCTCAGATATAAGTGT	0.493													25	11					0	0	0.005443	0	0
VCX	26609	broad.mit.edu	37	X	7811740	7811740	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:7811740G>A	uc004crz.2	+	3	523	c.304G>A	c.(304-306)GAC>AAC	p.D102N		NM_013452	NP_038480	Q9H320	VCX1_HUMAN	variable charge, X chromosome	102	Glu-rich.				chromatin organization|ribosome assembly|spermatogenesis	nucleolus	chromatin binding				0		Colorectal(8;0.0136)|Medulloblastoma(8;0.184)				GACCCAGCACGACCCCCTGAG	0.687													51	43					0	0	0.014410	0	0
FRMPD4	9758	broad.mit.edu	37	X	12632949	12632949	+	Missense_Mutation	SNP	A	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:12632949A>T	uc004cuz.1	+	4	877	c.371A>T	c.(370-372)AAT>ATT	p.N124I	FRMPD4_uc011mij.1_Missense_Mutation_p.N116I	NM_014728	NP_055543	Q14CM0	FRPD4_HUMAN	FERM and PDZ domain containing 4	124	PDZ.				positive regulation of synapse structural plasticity	cytoskeleton|dendritic spine	phosphatidylinositol-4,5-bisphosphate binding|protein binding			central_nervous_system(5)|ovary(3)|skin(2)|large_intestine(1)|lung(1)|pancreas(1)	13						GTAATGATTAATGATGAACCG	0.512													27	10					0	0	0.008361	0	0
TLR7	51284	broad.mit.edu	37	X	12905587	12905587	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:12905587G>A	uc004cvc.2	+	3	2099	c.1960G>A	c.(1960-1962)GAA>AAA	p.E654K		NM_016562	NP_057646	Q9NYK1	TLR7_HUMAN	toll-like receptor 7 precursor	654	Extracellular (Potential).|LRR 22.				cellular response to mechanical stimulus|defense response to virus|I-kappaB phosphorylation|inflammatory response|innate immune response|positive regulation of chemokine production|positive regulation of interferon-alpha biosynthetic process|positive regulation of interferon-beta biosynthetic process|positive regulation of interferon-gamma biosynthetic process|positive regulation of interleukin-8 biosynthetic process|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus	early phagosome|endoplasmic reticulum membrane|endosome membrane|integral to membrane|lysosome|plasma membrane	double-stranded RNA binding|single-stranded RNA binding|siRNA binding|transmembrane receptor activity			ovary(2)|lung(2)|breast(1)	5					Imiquimod(DB00724)	AAAATTAGAGGAATTAGACAT	0.348													45	24					0	0	0.010771	0	0
ASB11	140456	broad.mit.edu	37	X	15311353	15311353	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:15311353G>A	uc004cwp.1	-	4	459	c.459C>T	c.(457-459)TTC>TTT	p.F153F	ASB11_uc004cwo.1_Silent_p.F132F|ASB11_uc010nes.1_RNA|ASB11_uc010net.1_Silent_p.F136F	NM_080873	NP_543149	Q8WXH4	ASB11_HUMAN	ankyrin repeat and SOCS box-containing protein	153	ANK 3.				intracellular signal transduction					breast(2)|skin(1)	3	Hepatocellular(33;0.183)					CCTTGGCTCCGAACTCCAGCA	0.552													49	68					0	0	0.014410	0	0
REPS2	9185	broad.mit.edu	37	X	17153397	17153397	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:17153397C>T	uc004cxv.1	+	16	1847	c.1676C>T	c.(1675-1677)TCT>TTT	p.S559F	REPS2_uc004cxw.1_Missense_Mutation_p.S558F|REPS2_uc011miw.1_Missense_Mutation_p.S357F	NM_004726	NP_004717	Q8NFH8	REPS2_HUMAN	RALBP1 associated Eps domain containing 2	559	Interaction with RALBP1.				epidermal growth factor receptor signaling pathway|protein complex assembly	cytoplasm	calcium ion binding|protein binding			skin(2)|central_nervous_system(1)	3	Hepatocellular(33;0.183)					GTACTGTATTCTCAGCCACCA	0.423													28	55					0	0	0.008361	0	0
BEND2	139105	broad.mit.edu	37	X	18192217	18192218	+	Missense_Mutation	DNP	AC	TT	TT			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:18192217_18192218AC>TT	uc004cyj.3	-	12	2067_2068	c.1913_1914GT>AA	c.(1912-1914)AGT>AAA	p.S638K	BEND2_uc010nfb.2_Missense_Mutation_p.S547K	NM_153346	NP_699177	Q8NDZ0	BEND2_HUMAN	BEN domain containing 2	638										ovary(3)|kidney(1)|central_nervous_system(1)	5						GGATAGCATTACTGTTTGGCTG	0.406													11	21					0	0	0.004672	0	0
BEND2	139105	broad.mit.edu	37	X	18221903	18221903	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:18221903G>A	uc004cyj.3	-	5	779	c.625C>T	c.(625-627)CCC>TCC	p.P209S	BEND2_uc010nfb.2_Missense_Mutation_p.P209S	NM_153346	NP_699177	Q8NDZ0	BEND2_HUMAN	BEN domain containing 2	209								p.E204fs*66(1)		ovary(3)|kidney(1)|central_nervous_system(1)	5						ACAATTCTGGGATATGATAAA	0.488													51	33					0	0	0.014410	0	0
ZNF645	158506	broad.mit.edu	37	X	22292062	22292062	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:22292062G>A	uc004dai.1	+	1	1003	c.954G>A	c.(952-954)ACG>ACA	p.T318T		NM_152577	NP_689790	Q8N7E2	ZN645_HUMAN	zinc finger protein 645	318	Pro-rich.					intracellular	zinc ion binding			lung(1)|pancreas(1)	2						CTCTAACCACGACCTACGATC	0.458													37	10					0	0	0.006230	0	0
PRDX4	10549	broad.mit.edu	37	X	23697366	23697366	+	Missense_Mutation	SNP	C	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:23697366C>A	uc004dam.2	+	4	604	c.561C>A	c.(559-561)GAC>GAA	p.D187E		NM_006406	NP_006397	Q13162	PRDX4_HUMAN	peroxiredoxin 4	187	Thioredoxin.				cell redox homeostasis|I-kappaB phosphorylation		thioredoxin peroxidase activity			upper_aerodigestive_tract(1)	1						TCTCAAAGGACTATGGTGTAT	0.408													34	27					8.16904e-11	8.80344e-11	0.007835	1	0
FAM48B1	100130302	broad.mit.edu	37	X	24382737	24382737	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:24382737C>T	uc011mjx.1	+	1	1860	c.1860C>T	c.(1858-1860)GCC>GCT	p.A620A		NM_001136234	NP_001129706			hypothetical protein LOC100130302											kidney(1)	1						TCCAGGGAGCCCAGGCTTTGG	0.602													14	5					0	0	0.001855	0	0
MAGEB18	286514	broad.mit.edu	37	X	26157210	26157210	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:26157210G>A	uc004dbq.1	+	2	295	c.108G>A	c.(106-108)GAG>GAA	p.E36E		NM_173699	NP_775970	Q96M61	MAGBI_HUMAN	melanoma antigen family B, 18	36							protein binding			central_nervous_system(1)	1						CAGAAGGAGAGTCACCCTCCC	0.577													8	15					0	0	0.004482	0	0
MAGEB18	286514	broad.mit.edu	37	X	26157816	26157816	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:26157816G>A	uc004dbq.1	+	2	901	c.714G>A	c.(712-714)GGG>GGA	p.G238G		NM_173699	NP_775970	Q96M61	MAGBI_HUMAN	melanoma antigen family B, 18	238	MAGE.						protein binding			central_nervous_system(1)	1						TCCTCTATGGGGATCCCAGGA	0.493													5	3					0	0	0.001168	0	0
MAGEB6	158809	broad.mit.edu	37	X	26212379	26212379	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:26212379C>T	uc004dbr.2	+	2	565	c.416C>T	c.(415-417)TCC>TTC	p.S139F	MAGEB6_uc010ngc.1_5'UTR	NM_173523	NP_775794	Q8N7X4	MAGB6_HUMAN	melanoma antigen family B, 6	139	Ser-rich.							p.S139S(1)		ovary(3)	3						CCAAGCACTTCCCATGATGTC	0.537													6	20					0	0	0.001168	0	0
MAGEB6	158809	broad.mit.edu	37	X	26213001	26213001	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:26213001G>A	uc004dbr.2	+	2	1187	c.1038G>A	c.(1036-1038)CAG>CAA	p.Q346Q	MAGEB6_uc010ngc.1_Silent_p.Q126Q	NM_173523	NP_775794	Q8N7X4	MAGB6_HUMAN	melanoma antigen family B, 6	346	MAGE.									ovary(3)	3						TTTACCGGCAGGTGTGCAACA	0.493													42	17					0	0	0.014410	0	0
DCAF8L1	139425	broad.mit.edu	37	X	27998043	27998043	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:27998043G>A	uc004dbx.1	-	1	1524	c.1409C>T	c.(1408-1410)TCC>TTC	p.S470F		NM_001017930	NP_001017930	A6NGE4	DC8L1_HUMAN	DDB1 and CUL4 associated factor 8-like 1	470	WD 6.									ovary(3)|skin(1)	4						GATGATCTGGGAGGATGATTT	0.493													5	4					0	0	0.000602	0	0
DCAF8L1	139425	broad.mit.edu	37	X	27999286	27999286	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:27999286C>T	uc004dbx.1	-	1	281	c.166G>A	c.(166-168)GAT>AAT	p.D56N		NM_001017930	NP_001017930	A6NGE4	DC8L1_HUMAN	DDB1 and CUL4 associated factor 8-like 1	56										ovary(3)|skin(1)	4						AAACCACCATCCCTGGTATCA	0.517													6	21					0	0	0.001168	0	0
MAGEB2	4113	broad.mit.edu	37	X	30236800	30236800	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:30236800G>A	uc004dbz.2	+	2	206	c.103G>A	c.(103-105)GAA>AAA	p.E35K		NM_002364	NP_002355	O15479	MAGB2_HUMAN	melanoma antigen family B, 2	35							protein binding			ovary(1)	1						TGAAGCAGAGGAAGAAGAGGC	0.602													7	3					0	0	0.001984	0	0
FAM47A	158724	broad.mit.edu	37	X	34149069	34149069	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:34149069C>T	uc004ddg.2	-	1	1360	c.1327G>A	c.(1327-1329)GAT>AAT	p.D443N		NM_203408	NP_981953	Q5JRC9	FA47A_HUMAN	hypothetical protein LOC158724	443										ovary(4)|central_nervous_system(1)	5						TCACAACGATCCCATACGTCC	0.557													19	8					0	0	0.008871	0	0
FAM47A	158724	broad.mit.edu	37	X	34149783	34149783	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:34149783C>T	uc004ddg.2	-	1	646	c.613G>A	c.(613-615)GAG>AAG	p.E205K		NM_203408	NP_981953	Q5JRC9	FA47A_HUMAN	hypothetical protein LOC158724	205	Pro-rich.									ovary(4)|central_nervous_system(1)	5						ACTCCAGTCTCGGGAGGCTCT	0.627													22	12					0	0	0.003330	0	0
FAM47B	170062	broad.mit.edu	37	X	34962818	34962818	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:34962818C>T	uc004ddi.1	+	1	1888	c.1870C>T	c.(1870-1872)CCT>TCT	p.P624S		NM_152631	NP_689844	Q8NA70	FA47B_HUMAN	hypothetical protein LOC170062	624										ovary(3)|breast(1)	4						TGTTAAGACTCCTATTCAACG	0.398													24	46					0	0	0.005443	0	0
MAGEB16	139604	broad.mit.edu	37	X	35820805	35820805	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:35820805G>A	uc010ngt.1	+	2	771	c.492G>A	c.(490-492)ATG>ATA	p.M164I		NM_001099921	NP_001093391	A2A368	MAGBG_HUMAN	melanoma antigen family B, 16	164	MAGE.									lung(3)|ovary(2)|breast(1)|skin(1)	7						ACCTAGAGATGATATTTGGCC	0.468													23	40					0	0	0.003330	0	0
CXorf22	170063	broad.mit.edu	37	X	35944275	35944275	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:35944275C>T	uc004ddj.2	+	2	450	c.391C>T	c.(391-393)CCT>TCT	p.P131S	CXorf22_uc010ngv.2_RNA	NM_152632	NP_689845	Q6ZTR5	CX022_HUMAN	hypothetical protein LOC170063	131										large_intestine(1)|lung(1)|ovary(1)	3						AACAGAAATTCCTCTAATTGG	0.318													6	3					0	0	0.001984	0	0
CXorf59	286464	broad.mit.edu	37	X	36090074	36090074	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:36090074G>A	uc004ddk.1	+	3	362	c.176G>A	c.(175-177)GGA>GAA	p.G59E		NM_173695	NP_775966	Q8N9S7	CX059_HUMAN	hypothetical protein LOC286464	59						integral to membrane				central_nervous_system(1)	1						CCTGCAAAGGGAAACTTATTT	0.358													11	10					0	0	0.008291	0	0
FAM47C	442444	broad.mit.edu	37	X	37027036	37027036	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:37027036G>A	uc004ddl.1	+	1	567	c.553G>A	c.(553-555)GAA>AAA	p.E185K		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	185										ovary(3)	3						CCCCTGTGGGGAATTCTCCCC	0.647													6	2					0	0	0.001984	0	0
FAM47C	442444	broad.mit.edu	37	X	37027273	37027273	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:37027273G>A	uc004ddl.1	+	1	804	c.790G>A	c.(790-792)GAG>AAG	p.E264K		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	264										ovary(3)	3						GGAGCCTCCCGAGACTGGAGT	0.612													20	9					0	0	0.010504	0	0
SSX6	280657	broad.mit.edu	37	X	47970732	47970732	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:47970732G>A	uc004dix.1	+	4	395	c.273G>A	c.(271-273)GGG>GGA	p.G91G	SSX6_uc011mlv.1_Silent_p.G91G	NM_173357	NP_775493			SubName: Full=Putative uncharacterized protein SSX1;												0						GTAACCGTGGGAATGAGGGTG	0.483													3	3					0	0	0.004672	0	0
SLC38A5	92745	broad.mit.edu	37	X	48320627	48320628	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:48320627_48320628GG>AA	uc010nid.2	-	10	802_803	c.624_625CC>TT	c.(622-627)TTCCTT>TTTTTT	p.L209F	SLC38A5_uc004djk.3_Missense_Mutation_p.L158F	NM_033518	NP_277053	Q8WUX1	S38A5_HUMAN	solute carrier family 38, member 5	209	Helical; (Potential).				cellular nitrogen compound metabolic process|ion transport	integral to membrane|plasma membrane				ovary(3)	3						ACCGAAACAAGGAAAAACAGCA	0.49													3	11					0	0	0.004672	0	0
CACNA1F	778	broad.mit.edu	37	X	49081361	49081361	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:49081361G>A	uc004dnb.2	-	14	1834	c.1772C>T	c.(1771-1773)TCC>TTC	p.S591F	CACNA1F_uc010nip.2_Missense_Mutation_p.S580F	NM_005183	NP_005174	O60840	CAC1F_HUMAN	calcium channel, voltage-dependent, L type,	591	Cytoplasmic (Potential).|II.				axon guidance|detection of light stimulus involved in visual perception	voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity			breast(3)|ovary(1)|kidney(1)|skin(1)	6					Verapamil(DB00661)	GTTGAAGAAGGAAGACACATA	0.552													3	4					0	0	0.000602	0	0
PPP1R3F	89801	broad.mit.edu	37	X	49143278	49143278	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:49143278C>T	uc004dnh.1	+	4	2142	c.2126C>T	c.(2125-2127)CCC>CTC	p.P709L	PPP1R3F_uc011mnd.1_Missense_Mutation_p.P380L|PPP1R3F_uc004dni.2_Missense_Mutation_p.P363L|PPP1R3F_uc004dnj.1_Missense_Mutation_p.P363L	NM_033215	NP_149992	Q6ZSY5	PPR3F_HUMAN	protein phosphatase 1, regulatory (inhibitor)	709	Extracellular (Potential).					integral to membrane				ovary(2)|skin(1)	3	Ovarian(276;0.236)					CTCCTCAGTCCCTTGGGGGCC	0.587													5	4					0	0	0.000602	0	0
PAGE4	9506	broad.mit.edu	37	X	49598451	49598451	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:49598451G>A	uc004don.1	+	5	374	c.295G>A	c.(295-297)GAT>AAT	p.D99N		NM_007003	NP_008934	O60829	GAGC1_HUMAN	G antigen, family C, 1	99											0	Ovarian(276;0.236)					TATTTTAGGAGATGGGCAGCC	0.318													6	3					0	0	0.003080	0	0
CCNB3	85417	broad.mit.edu	37	X	50052150	50052150	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:50052150C>T	uc004dox.3	+	6	1279	c.981C>T	c.(979-981)TTC>TTT	p.F327F	CCNB3_uc004doy.2_Silent_p.F327F|CCNB3_uc004doz.2_Intron|CCNB3_uc010njq.2_Intron	NM_033031	NP_149020	Q8WWL7	CCNB3_HUMAN	cyclin B3 isoform 3	327					cell division|meiosis|regulation of cyclin-dependent protein kinase activity|regulation of G2/M transition of mitotic cell cycle	nucleus	protein kinase binding			ovary(4)|lung(3)|large_intestine(1)|pancreas(1)	9	Ovarian(276;0.236)					AGACACTTTTCCAAGAGCTAT	0.438													51	22					0	0	0.014410	0	0
DGKK	139189	broad.mit.edu	37	X	50119069	50119069	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:50119069T>C	uc010njr.1	-	25	3428	c.3368A>G	c.(3367-3369)CAA>CGA	p.Q1123R		NM_001013742	NP_001013764	Q5KSL6	DGKK_HUMAN	diacylglycerol kinase kappa	1123					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|diacylglycerol metabolic process|intracellular signal transduction|platelet activation|response to oxidative stress	cytoplasm|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(1)|kidney(1)	2	Ovarian(276;0.236)					GCCACTGTCTTGGCCGTAAAA	0.443													11	11					0	0	0.010729	0	0
DGKK	139189	broad.mit.edu	37	X	50129459	50129459	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:50129459G>A	uc010njr.1	-	15	2304	c.2244C>T	c.(2242-2244)TTC>TTT	p.F748F		NM_001013742	NP_001013764	Q5KSL6	DGKK_HUMAN	diacylglycerol kinase kappa	748					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|diacylglycerol metabolic process|intracellular signal transduction|platelet activation|response to oxidative stress	cytoplasm|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(1)|kidney(1)	2	Ovarian(276;0.236)					TTTGAGGAATGAAGGGCTTCC	0.473													31	12					0	0	0.012213	0	0
SHROOM4	57477	broad.mit.edu	37	X	50376915	50376915	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:50376915C>T	uc004dpe.2	-	4	2184	c.2158G>A	c.(2158-2160)GGA>AGA	p.G720R	SHROOM4_uc004dpd.3_RNA|SHROOM4_uc004dpf.1_Missense_Mutation_p.G604R	NM_020717	NP_065768	Q9ULL8	SHRM4_HUMAN	shroom family member 4	720					actin filament organization|brain development|cell morphogenesis|cognition	apical plasma membrane|basal plasma membrane|internal side of plasma membrane|nucleus	actin filament binding			upper_aerodigestive_tract(1)	1	Ovarian(276;0.236)					CCACGGACTCCACAGTGAGCA	0.577													8	11					0	0	0.004482	0	0
LOC347376	347376	broad.mit.edu	37	X	50648707	50648707	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:50648707C>T	uc010njs.2	+	1	276	c.270C>T	c.(268-270)ATC>ATT	p.I90I		NR_003933				RecName: Full=Histone H3; Flags: Fragment;												0						GGGCAGCTATCGGTACTTTGC	0.488													6	2					0	0	0.001984	0	0
XAGE5	170627	broad.mit.edu	37	X	52842166	52842166	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:52842166G>A	uc004drd.1	+	3	140	c.75G>A	c.(73-75)GAG>GAA	p.E25E		NM_130775	NP_570131	Q8WWM1	GAGD5_HUMAN	X antigen family, member 5	25										ovary(1)	1						TGTCCCAGGAGCCCAGTGTGC	0.448													18	3					0	0	0.006122	0	0
FOXR2	139628	broad.mit.edu	37	X	55650865	55650865	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:55650865C>T	uc004duo.2	+	1	1033	c.721C>T	c.(721-723)CAT>TAT	p.H241Y		NM_198451	NP_940853	Q6PJQ5	FOXR2_HUMAN	forkhead box R2	241	Fork-head.				embryo development|organ development|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			lung(2)|central_nervous_system(1)	3						GAGCACCATTCATTACAACCT	0.507													30	9					0	0	0.013726	0	0
FAAH2	158584	broad.mit.edu	37	X	57337090	57337090	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:57337090G>A	uc004dvc.2	+	3	489	c.340G>A	c.(340-342)GAA>AAA	p.E114K		NM_174912	NP_777572	Q6GMR7	FAAH2_HUMAN	fatty acid amide hydrolase 2	114						integral to membrane	carbon-nitrogen ligase activity, with glutamine as amido-N-donor|hydrolase activity			ovary(3)	3						GCAGGAAGATGAAGCCACCCT	0.408										HNSCC(52;0.14)			10	7					0	0	0.006214	0	0
MTMR8	55613	broad.mit.edu	37	X	63444921	63444921	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:63444921C>T	uc011mou.1	-	10	1803	c.1735G>A	c.(1735-1737)GGG>AGG	p.G579R	ASB12_uc004dvp.1_Missense_Mutation_p.G195R|ASB12_uc004dvq.1_Missense_Mutation_p.G204R|ASB12_uc004dvr.1_Missense_Mutation_p.G204R	NM_017677	NP_060147	Q96EF0	MTMR8_HUMAN	myotubularin related protein 8	605						nuclear envelope	protein tyrosine phosphatase activity			ovary(2)|breast(2)	4						GGGTCTGCCCCGTGGAGCAAA	0.562													9	4					0	0	0.008291	0	0
MTMR8	55613	broad.mit.edu	37	X	63555965	63555965	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:63555965G>A	uc004dvs.2	-	10	1213	c.1145C>T	c.(1144-1146)TCC>TTC	p.S382F	MTMR8_uc011mou.1_Intron|MTMR8_uc004dvt.1_Missense_Mutation_p.S382F	NM_017677	NP_060147	Q96EF0	MTMR8_HUMAN	myotubularin related protein 8	382	Myotubularin phosphatase.					nuclear envelope	protein tyrosine phosphatase activity			ovary(2)|breast(2)	4						TTACCTTTGGGAAAACTTGTG	0.343													32	18					0	0	0.004289	0	0
ZC3H12B	340554	broad.mit.edu	37	X	64718908	64718908	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:64718908G>A	uc010nko.2	+	3	754	c.745G>A	c.(745-747)GAA>AAA	p.E249K		NM_001010888	NP_001010888	Q5HYM0	ZC12B_HUMAN	zinc finger CCCH-type containing 12B	249							endonuclease activity|nucleic acid binding|zinc ion binding			lung(1)|kidney(1)|pancreas(1)	3						ACTGGAGAAGGAAAAGATTCT	0.393													61	37					0	0	0.014410	0	0
HEPH	9843	broad.mit.edu	37	X	65390523	65390523	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:65390523G>A	uc011moz.1	+	2	180	c.120G>A	c.(118-120)TGG>TGA	p.W40*	HEPH_uc004dwn.2_Nonsense_Mutation_p.W40*|HEPH_uc004dwo.2_Intron|HEPH_uc010nkr.2_Nonsense_Mutation_p.W40*|HEPH_uc011mpa.1_Nonsense_Mutation_p.W40*	NM_138737	NP_620074	Q9BQS7	HEPH_HUMAN	hephaestin isoform a	37	Extracellular (Potential).|Plastocyanin-like 1.				cellular iron ion homeostasis|copper ion transport|transmembrane transport	integral to membrane|plasma membrane	copper ion binding|oxidoreductase activity			lung(5)|ovary(4)	9						ATGTGCAGTGGAACTATGCTC	0.522													11	6					0	0	0.008291	0	0
FAM155B	27112	broad.mit.edu	37	X	68749608	68749608	+	Missense_Mutation	SNP	C	T	T	rs138872063		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:68749608C>T	uc004dxk.2	+	3	1276	c.1228C>T	c.(1228-1230)CGT>TGT	p.R410C		NM_015686	NP_056501	O75949	F155B_HUMAN	transmembrane protein 28	411						integral to membrane				ovary(1)|breast(1)	2						TCCCCCAGGCCGTGTCAGCAA	0.418													15	7					0	0	0.002450	0	0
TEX11	56159	broad.mit.edu	37	X	69871302	69871302	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:69871302C>T	uc004dyl.2	-	18	1688	c.1526G>A	c.(1525-1527)AGA>AAA	p.R509K	TEX11_uc004dyk.2_Missense_Mutation_p.R184K|TEX11_uc004dym.2_Missense_Mutation_p.R494K	NM_001003811	NP_001003811	Q8IYF3	TEX11_HUMAN	testis expressed sequence 11 isoform 1	509							protein binding			ovary(3)|breast(1)|skin(1)	5	Renal(35;0.156)					ATTTATACCTCTTTCAGAGTT	0.343													7	7					0	0	0.003080	0	0
ERCC6L	54821	broad.mit.edu	37	X	71426010	71426010	+	Silent	SNP	A	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:71426010A>T	uc004eaq.1	-	2	2704	c.2607T>A	c.(2605-2607)CTT>CTA	p.L869L	PIN4_uc004eao.1_Intron|ERCC6L_uc004eap.1_Silent_p.L746L	NM_017669	NP_060139	Q2NKX8	ERC6L_HUMAN	excision repair protein ERCC6-like	869					cell division|mitotic prometaphase	condensed chromosome kinetochore|cytosol	ATP binding|DNA binding|helicase activity|protein binding			ovary(3)	3	Renal(35;0.156)					TTGATTTGCTAAGTACATAAT	0.373													6	15					0	0	0.001168	0	0
PHKA1	5255	broad.mit.edu	37	X	71843002	71843002	+	Silent	SNP	C	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:71843002C>A	uc004eax.3	-	18	2218	c.1917G>T	c.(1915-1917)CTG>CTT	p.L639L	PHKA1_uc004eay.3_Silent_p.L639L|PHKA1_uc011mqi.1_Silent_p.L639L	NM_002637	NP_002628	P46020	KPB1_HUMAN	phosphorylase kinase, alpha 1 (muscle) isoform	639					glucose metabolic process|glycogen catabolic process	cytosol|plasma membrane	calmodulin binding|glucan 1,4-alpha-glucosidase activity|phosphorylase kinase activity			ovary(3)|skin(1)	4	Renal(35;0.156)					TGCCAGATTCCAGGTAATCAT	0.413													18	11					1.2644e-06	1.35573e-06	0.010504	1	0
TSIX	9383	broad.mit.edu	37	X	73040921	73040921	+	RNA	SNP	C	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:73040921C>A	uc004ebn.2	+	1		c.28882C>A			XIST_uc004ebm.1_RNA	NR_003255				Homo sapiens XIST antisense RNA (non-protein coding) (TSIX), non-coding RNA.												0						TAATCCATTCCCCATCCCCAG	0.363													8	5					0.000157383	0.000168092	0.003080	1	0
TSIX	9383	broad.mit.edu	37	X	73045926	73045926	+	RNA	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:73045926C>T	uc004ebn.2	+	1		c.33887C>T			XIST_uc004ebm.1_RNA	NR_003255				Homo sapiens XIST antisense RNA (non-protein coding) (TSIX), non-coding RNA.												0						CACTAGAAATCCCAAACCCCA	0.488													38	17					0	0	0.004289	0	0
XIST	7503	broad.mit.edu	37	X	73062296	73062296	+	RNA	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:73062296G>A	uc004ebm.1	-	1		c.10293C>T				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						CTTGTCCCCAGAATCTGACAA	0.413													4	3					0	0	0.009096	0	0
XIST	7503	broad.mit.edu	37	X	73072049	73072049	+	RNA	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:73072049G>A	uc004ebm.1	-	1		c.540C>T				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						GGTTCAGAGGGGAAGGGAATC	0.463													5	1					0	0	0.000602	0	0
KIAA2022	340533	broad.mit.edu	37	X	73960521	73960521	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:73960521G>A	uc004eby.2	-	3	4488	c.3871C>T	c.(3871-3873)CCA>TCA	p.P1291S		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	1291					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						CTCCAGCCTGGGCTGCTCTCC	0.507													35	12					0	0	0.003755	0	0
KIAA2022	340533	broad.mit.edu	37	X	73961966	73961966	+	Missense_Mutation	SNP	A	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:73961966A>C	uc004eby.2	-	3	3043	c.2426T>G	c.(2425-2427)GTT>GGT	p.V809G		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	809					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						TCCCGGGATAACAGGTATATT	0.408													51	22					0	0	0.014410	0	0
KIAA2022	340533	broad.mit.edu	37	X	73962340	73962340	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:73962340G>A	uc004eby.2	-	3	2669	c.2052C>T	c.(2050-2052)AGC>AGT	p.S684S		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	684					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						CATTTGCACAGCTAGGAGCAC	0.448													17	5					0	0	0.004007	0	0
KIAA2022	340533	broad.mit.edu	37	X	73962509	73962509	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:73962509C>T	uc004eby.2	-	3	2500	c.1883G>A	c.(1882-1884)CGA>CAA	p.R628Q		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	628					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						TTTAGATTTTCGTTTGCGAGC	0.418													8	6					0	0	0.003080	0	0
KIAA2022	340533	broad.mit.edu	37	X	73963780	73963780	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:73963780G>A	uc004eby.2	-	3	1229	c.612C>T	c.(610-612)CTC>CTT	p.L204L		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	204					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						GGAAGCCTAGGAGCTGGTCTG	0.458													24	14					0	0	0.014323	0	0
ATRX	546	broad.mit.edu	37	X	76952146	76952146	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:76952146G>A	uc004ecp.3	-	5	521	c.289C>T	c.(289-291)CCT>TCT	p.P97S	ATRX_uc004ecq.3_Missense_Mutation_p.P97S|ATRX_uc004eco.3_5'UTR|ATRX_uc004ecr.2_Missense_Mutation_p.P97S|ATRX_uc010nlx.1_Missense_Mutation_p.P97S|ATRX_uc010nly.1_Missense_Mutation_p.P42S	NM_000489	NP_000480	P46100	ATRX_HUMAN	transcriptional regulator ATRX isoform 1	97					DNA methylation|DNA recombination|DNA repair|regulation of transcription, DNA-dependent	nuclear heterochromatin	ATP binding|chromo shadow domain binding|DNA binding|DNA helicase activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(14)|pancreas(12)|lung(1)|breast(1)|skin(1)|kidney(1)	30					Phosphatidylserine(DB00144)	TCATCCAAAGGTTTTTCATCA	0.299			Mis|F|N		Pancreatic neuroendocrine tumors		ATR-X (alpha thalassemia/mental retardation) syndrome						37	19					0	0	0.004289	0	0
CYSLTR1	10800	broad.mit.edu	37	X	77528719	77528719	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:77528719C>T	uc004edb.2	-	3	925	c.525G>A	c.(523-525)GAG>GAA	p.E175E	CYSLTR1_uc010nma.2_Silent_p.E175E|CYSLTR1_uc010nmb.2_Silent_p.E175E	NM_006639	NP_006630	Q9Y271	CLTR1_HUMAN	cysteinyl leukotriene receptor 1	175	Extracellular (Potential).				elevation of cytosolic calcium ion concentration|respiratory gaseous exchange	integral to plasma membrane|membrane fraction	leukotriene receptor activity			ovary(1)	1					Amlexanox(DB01025)|Cinalukast(DB00587)|Montelukast(DB00471)|Nedocromil(DB00716)|Pranlukast(DB01411)|Zafirlukast(DB00549)	CTTGTGGGGGCTCAAAGCACT	0.338													14	12					0	0	0.002450	0	0
LPAR4	2846	broad.mit.edu	37	X	78011171	78011171	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:78011171C>T	uc010nme.2	+	2	1210	c.805C>T	c.(805-807)CTC>TTC	p.L269F		NM_005296	NP_005287	Q99677	LPAR4_HUMAN	lysophosphatidic acid receptor 4	269	Helical; Name=6; (Potential).					integral to plasma membrane	lipid binding|purinergic nucleotide receptor activity, G-protein coupled			ovary(3)	3						CAACTCTGTCCTCTTCTTGTA	0.408													13	10					0	0	0.013537	0	0
FAM46D	169966	broad.mit.edu	37	X	79698902	79698902	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:79698902C>T	uc004edl.1	+	5	1198	c.864C>T	c.(862-864)TTC>TTT	p.F288F	FAM46D_uc004edm.1_Silent_p.F288F	NM_152630	NP_689843	Q8NEK8	FA46D_HUMAN	hypothetical protein LOC169966	288										lung(2)	2						ACAACCATTTCATAGGTGAAG	0.358													26	10					0	0	0.003954	0	0
CYLC1	1538	broad.mit.edu	37	X	83129566	83129566	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:83129566C>T	uc004eei.1	+	4	1871	c.1850C>T	c.(1849-1851)CCA>CTA	p.P617L	CYLC1_uc004eeh.1_Missense_Mutation_p.P616L	NM_021118	NP_066941	P35663	CYLC1_HUMAN	cylicin, basic protein of sperm head	617	Pro-rich.				cell differentiation|multicellular organismal development|spermatogenesis	acrosomal matrix|cytoskeletal calyx	structural molecule activity			ovary(4)|skin(1)	5						CCTTCTCTACCATCACCAAAG	0.418													10	8					0	0	0.001855	0	0
RPS6KA6	27330	broad.mit.edu	37	X	83319290	83319290	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:83319290G>A	uc004eej.1	-	22	2310	c.2233C>T	c.(2233-2235)CTG>TTG	p.L745L	RPS6KA6_uc011mqt.1_Silent_p.L745L|RPS6KA6_uc011mqu.1_Silent_p.L642L	NM_014496	NP_055311	Q9UK32	KS6A6_HUMAN	ribosomal protein S6 kinase polypeptide 6	745					axon guidance|central nervous system development|intracellular protein kinase cascade|synaptic transmission	cytosol|nucleoplasm	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			lung(5)|stomach(1)|central_nervous_system(1)|skin(1)	8						AAATCTTACAGGCCAGTTGAT	0.448													8	3					0	0	0.003080	0	0
RPS6KA6	27330	broad.mit.edu	37	X	83320119	83320119	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:83320119C>T	uc004eej.1	-	21	2049	c.1972G>A	c.(1972-1974)GAT>AAT	p.D658N	RPS6KA6_uc011mqt.1_Missense_Mutation_p.D658N|RPS6KA6_uc011mqu.1_Missense_Mutation_p.D555N	NM_014496	NP_055311	Q9UK32	KS6A6_HUMAN	ribosomal protein S6 kinase polypeptide 6	658	Protein kinase 2.				axon guidance|central nervous system development|intracellular protein kinase cascade|synaptic transmission	cytosol|nucleoplasm	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			lung(5)|stomach(1)|central_nervous_system(1)|skin(1)	8						GAAAGCAAATCCTAAATTAAA	0.299													11	6					0	0	0.008291	0	0
RPS6KA6	27330	broad.mit.edu	37	X	83400549	83400549	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:83400549C>T	uc004eej.1	-	6	515	c.438G>A	c.(436-438)GGG>GGA	p.G146G	RPS6KA6_uc011mqt.1_Silent_p.G146G|RPS6KA6_uc011mqu.1_Silent_p.G43G|RPS6KA6_uc010nmo.1_RNA	NM_014496	NP_055311	Q9UK32	KS6A6_HUMAN	ribosomal protein S6 kinase polypeptide 6	146	Protein kinase 1.				axon guidance|central nervous system development|intracellular protein kinase cascade|synaptic transmission	cytosol|nucleoplasm	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			lung(5)|stomach(1)|central_nervous_system(1)|skin(1)	8						AGTACAGTTTCCCTTCAGTCT	0.289													7	5					0	0	0.001984	0	0
DACH2	117154	broad.mit.edu	37	X	85403980	85403980	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:85403980C>T	uc004eew.2	+	1	526	c.356C>T	c.(355-357)TCC>TTC	p.S119F	DACH2_uc004eex.2_Missense_Mutation_p.S119F|DACH2_uc010nmq.2_5'UTR	NM_053281	NP_444511	Q96NX9	DACH2_HUMAN	dachshund 2 isoform a	119	DACHbox-N.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|nucleotide binding			ovary(4)|pancreas(1)	5						CTGGATATATCCCCCGTGGTG	0.562													15	12					0	0	0.004007	0	0
KLHL4	56062	broad.mit.edu	37	X	86887277	86887278	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:86887277_86887278CC>TT	uc004efb.2	+	7	1574_1575	c.1392_1393CC>TT	c.(1390-1395)GGCCGT>GGTTGT	p.R465C	KLHL4_uc004efa.2_Missense_Mutation_p.R465C	NM_019117	NP_061990	Q9C0H6	KLHL4_HUMAN	kelch-like 4 isoform 1	465	Kelch 1.					cytoplasm|microtubule cytoskeleton|nucleolus	actin binding			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5						CCATGAATGGCCGTAGGCTTCA	0.391													17	8					0	0	0.004672	0	0
PCDH11X	27328	broad.mit.edu	37	X	91090671	91090671	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:91090671C>T	uc004efk.1	+	1	1013	c.168C>T	c.(166-168)TCC>TCT	p.S56S	PCDH11X_uc004efl.1_Silent_p.S56S|PCDH11X_uc004efo.1_Silent_p.S56S|PCDH11X_uc010nmv.1_Silent_p.S56S|PCDH11X_uc004efm.1_Silent_p.S56S|PCDH11X_uc004efn.1_Silent_p.S56S|PCDH11X_uc004efh.1_Silent_p.S56S|PCDH11X_uc004efj.1_Silent_p.S56S	NM_032968	NP_116750	Q9BZA7	PC11X_HUMAN	protocadherin 11 X-linked isoform c	56	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion	integral to plasma membrane	calcium ion binding			large_intestine(2)	2						CAAACAAGTCCTTGACAACTG	0.463													12	27					0	0	0.010729	0	0
NAP1L3	4675	broad.mit.edu	37	X	92926783	92926783	+	Silent	SNP	T	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:92926783T>C	uc004efq.2	-	1	1826	c.1521A>G	c.(1519-1521)TAA>TAG	p.*507*	FAM133A_uc004efr.1_5'Flank	NM_004538	NP_004529	Q99457	NP1L3_HUMAN	nucleosome assembly protein 1-like 3	507					nucleosome assembly	chromatin assembly complex				ovary(1)|skin(1)	2						TCAGATTGACTTATTTTCTGT	0.323													10	4					0	0	0.006214	0	0
NAP1L3	4675	broad.mit.edu	37	X	92927223	92927223	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:92927223G>A	uc004efq.2	-	1	1386	c.1081C>T	c.(1081-1083)CAT>TAT	p.H361Y	FAM133A_uc004efr.1_5'Flank	NM_004538	NP_004529	Q99457	NP1L3_HUMAN	nucleosome assembly protein 1-like 3	361					nucleosome assembly	chromatin assembly complex				ovary(1)|skin(1)	2						GGTAGAAAATGAAATTCAAAG	0.403													20	6					0	0	0.010504	0	0
LOC442459	442459	broad.mit.edu	37	X	98975483	98975483	+	RNA	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:98975483C>T	uc011mrd.1	-	8		c.860G>A				NR_024608				Homo sapiens DNA repair protein mRNA, complete cds.												0						GAACTGGATTCCTCAAAGGAT	0.478													5	2					0	0	0.000602	0	0
PCDH19	57526	broad.mit.edu	37	X	99661934	99661934	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:99661934G>A	uc010nmz.2	-	1	3338	c.1662C>T	c.(1660-1662)CTC>CTT	p.L554L	PCDH19_uc004efw.3_Silent_p.L554L|PCDH19_uc004efx.3_Silent_p.L554L	NM_020766	NP_001098713	Q8TAB3	PCD19_HUMAN	protocadherin 19 isoform b	554	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|breast(2)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	7						CGTTGACGTCGAGGATGATGA	0.582													48	27					0	0	0.014410	0	0
SRPX2	27286	broad.mit.edu	37	X	99917354	99917354	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:99917354C>T	uc004egb.2	+	4	825	c.345C>T	c.(343-345)GCC>GCT	p.A115A		NM_014467	NP_055282	O60687	SRPX2_HUMAN	sushi-repeat-containing protein, X-linked 2	115	Sushi 1.				angiogenesis|cell motility|cell-cell adhesion|positive regulation of cell migration involved in sprouting angiogenesis|regulation of phosphorylation	cytoplasm|extracellular region	receptor binding			ovary(2)	2						CTGGAACTGCCTACTGCAGGC	0.562													54	26					0	0	0.014410	0	0
SRPX2	27286	broad.mit.edu	37	X	99924355	99924355	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:99924355C>T	uc004egb.2	+	10	1686	c.1206C>T	c.(1204-1206)ATC>ATT	p.I402I		NM_014467	NP_055282	O60687	SRPX2_HUMAN	sushi-repeat-containing protein, X-linked 2	402					angiogenesis|cell motility|cell-cell adhesion|positive regulation of cell migration involved in sprouting angiogenesis|regulation of phosphorylation	cytoplasm|extracellular region	receptor binding			ovary(2)	2						CCAACATCATCGAGGAGCTCA	0.627													4	7					0	0	0.000602	0	0
Unknown	0	broad.mit.edu	37	X	100143090	100143090	+	RNA	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:100143090C>T	uc010nnf.2	-	1		c.528G>A			uc004egm.2_RNA					full-length cDNA clone CS0DA010YB10 of Neuroblastoma of Homo sapiens (human).																		TATGGTATTTCGGAATGACAA	0.448													5	11					0	0	0.001168	0	0
RAB40AL	282808	broad.mit.edu	37	X	102192851	102192851	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:102192851C>T	uc004ejs.2	+	1	652	c.605C>T	c.(604-606)TCC>TTC	p.S202F		NM_001031834	NP_001027004	P0C0E4	RB40L_HUMAN	RAB40A, member RAS oncogene family-like	202	SOCS box.				protein transport|small GTPase mediated signal transduction	mitochondrion|plasma membrane	GTP binding			ovary(2)	2						ACCATCGTGTCCTGCACACCT	0.597													32	12					0	0	0.012213	0	0
MCART6	401612	broad.mit.edu	37	X	103349360	103349360	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:103349360G>A	uc004elu.2	-	2	762	c.581C>T	c.(580-582)TCT>TTT	p.S194F		NM_001012755	NP_001012773	Q5H9E4	MCAR6_HUMAN	mitochondrial carrier triple repeat 6	194	Helical; Name=4; (Potential).|Solcar 2.				transport	integral to membrane|mitochondrial inner membrane					0						GTCCTTGAAAGAAAAATATAG	0.552													39	12					0	0	0.005524	0	0
ZCCHC18	644353	broad.mit.edu	37	X	103359773	103359773	+	Missense_Mutation	SNP	G	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:103359773G>C	uc011msh.1	+	3	2287	c.971G>C	c.(970-972)AGT>ACT	p.S324T	MCART6_uc004elu.2_Intron|ZCCHC18_uc011msg.1_Intron	NM_001143978	NP_001137450	P0CG32	ZCC18_HUMAN	zinc finger, CCHC domain containing 18	324							nucleic acid binding|zinc ion binding				0						CTTTCTACCAGTGGTGGTTCT	0.517													2	0					0	0	0.004672	0	0
IL1RAPL2	26280	broad.mit.edu	37	X	105011151	105011151	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:105011151G>A	uc004elz.1	+	11	2314	c.1558G>A	c.(1558-1560)GAA>AAA	p.E520K		NM_017416	NP_059112	Q9NP60	IRPL2_HUMAN	interleukin 1 receptor accessory protein-like 2	520	Cytoplasmic (Potential).|TIR.				central nervous system development|innate immune response	integral to membrane	interleukin-1, Type II, blocking receptor activity			breast(2)|ovary(1)	3						GAATTGCCAGGAAGTGGAATC	0.388													44	16					0	0	0.014410	0	0
IL1RAPL2	26280	broad.mit.edu	37	X	105011256	105011256	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:105011256G>A	uc004elz.1	+	11	2419	c.1663G>A	c.(1663-1665)GAA>AAA	p.E555K		NM_017416	NP_059112	Q9NP60	IRPL2_HUMAN	interleukin 1 receptor accessory protein-like 2	555	Cytoplasmic (Potential).|TIR.				central nervous system development|innate immune response	integral to membrane	interleukin-1, Type II, blocking receptor activity			breast(2)|ovary(1)	3						CTTAGTATATGAAATGCCCAT	0.423													47	28					0	0	0.014410	0	0
SERPINA7	6906	broad.mit.edu	37	X	105280677	105280677	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:105280677C>T	uc004eme.1	-	1	389	c.373G>A	c.(373-375)GAA>AAA	p.E125K	SERPINA7_uc010npd.2_Missense_Mutation_p.E125K|SERPINA7_uc010npe.1_Missense_Mutation_p.E125K	NM_000354	NP_000345	P05543	THBG_HUMAN	serine (or cysteine) proteinase inhibitor, clade	125					regulation of proteolysis	extracellular space	serine-type endopeptidase inhibitor activity				0					Levothyroxine(DB00451)|Liothyronine(DB00279)	AATTCCAGTTCCTTCTTTGGA	0.453													63	23					0	0	0.014410	0	0
RNF128	79589	broad.mit.edu	37	X	106016214	106016214	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:106016214G>A	uc004eml.2	+	2	806	c.556G>A	c.(556-558)GGC>AGC	p.G186S	RNF128_uc004emk.2_Missense_Mutation_p.G160S	NM_194463	NP_919445	Q8TEB7	RN128_HUMAN	ring finger protein 128 isoform 1	186						endomembrane system|integral to membrane|perinuclear region of cytoplasm	zinc ion binding			ovary(1)|central_nervous_system(1)	2						TATTCAAAGAGGCATACAAGT	0.343													32	10					0	0	0.009535	0	0
CLDN2	9075	broad.mit.edu	37	X	106171926	106171926	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:106171926G>A	uc004emq.1	+	2	987	c.468G>A	c.(466-468)ATG>ATA	p.M156I	MORC4_uc004emp.3_Intron|CLDN2_uc004emt.1_Missense_Mutation_p.M156I	NM_020384	NP_065117	P57739	CLD2_HUMAN	claudin 2	156	Extracellular (Potential).				calcium-independent cell-cell adhesion	integral to membrane|tight junction	identical protein binding|structural molecule activity			ovary(1)	1						CTGACAGCATGAAATTTGAGA	0.478													51	25					0	0	0.014410	0	0
COL4A6	1288	broad.mit.edu	37	X	107431790	107431790	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:107431790C>T	uc004enw.3	-	21	1650	c.1547G>A	c.(1546-1548)GGA>GAA	p.G516E	COL4A6_uc004env.3_Missense_Mutation_p.G515E|COL4A6_uc011msn.1_Missense_Mutation_p.G515E|COL4A6_uc010npk.2_Missense_Mutation_p.G515E	NM_001847	NP_001838	Q14031	CO4A6_HUMAN	type IV alpha 6 collagen isoform A precursor	516	Triple-helical region.|Cell attachment site (Potential).				cell adhesion|extracellular matrix organization	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(6)|urinary_tract(1)|large_intestine(1)	8						GCCTCGATCTCCTCTGGCTCC	0.592									Alport_syndrome_with_Diffuse_Leiomyomatosis				23	11					0	0	0.003330	0	0
COL4A6	1288	broad.mit.edu	37	X	107438346	107438346	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:107438346C>T	uc004enw.3	-	15	1020	c.917G>A	c.(916-918)GGT>GAT	p.G306D	COL4A6_uc004env.3_Missense_Mutation_p.G305D|COL4A6_uc011msn.1_Missense_Mutation_p.G305D|COL4A6_uc010npk.2_Missense_Mutation_p.G305D	NM_001847	NP_001838	Q14031	CO4A6_HUMAN	type IV alpha 6 collagen isoform A precursor	306	Triple-helical region.				cell adhesion|extracellular matrix organization	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(6)|urinary_tract(1)|large_intestine(1)	8						TCCTTCTGAACCCATGGGACC	0.403									Alport_syndrome_with_Diffuse_Leiomyomatosis				39	20					0	0	0.014410	0	0
COL4A6	1288	broad.mit.edu	37	X	107438355	107438355	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:107438355C>T	uc004enw.3	-	15	1011	c.908G>A	c.(907-909)GGT>GAT	p.G303D	COL4A6_uc004env.3_Missense_Mutation_p.G302D|COL4A6_uc011msn.1_Missense_Mutation_p.G302D|COL4A6_uc010npk.2_Missense_Mutation_p.G302D	NM_001847	NP_001838	Q14031	CO4A6_HUMAN	type IV alpha 6 collagen isoform A precursor	303	Triple-helical region.				cell adhesion|extracellular matrix organization	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(6)|urinary_tract(1)|large_intestine(1)	8						ACCCATGGGACCCTGTAAAGA	0.403									Alport_syndrome_with_Diffuse_Leiomyomatosis				38	18					0	0	0.009718	0	0
COL4A5	1287	broad.mit.edu	37	X	107840644	107840644	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:107840644G>A	uc004enz.1	+	24	1827	c.1625G>A	c.(1624-1626)GGA>GAA	p.G542E	COL4A5_uc011mso.1_Missense_Mutation_p.G542E|COL4A5_uc004eob.1_Missense_Mutation_p.G150E	NM_033380	NP_203699	P29400	CO4A5_HUMAN	type IV collagen alpha 5 isoform 2 precursor	542	Triple-helical region.				axon guidance	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(3)|central_nervous_system(1)	4						GGCTTTCCTGGATCTAAAGGT	0.393									Alport_syndrome_with_Diffuse_Leiomyomatosis				43	24					0	0	0.014410	0	0
GUCY2F	2986	broad.mit.edu	37	X	108697044	108697044	+	Silent	SNP	G	A	A	rs137951058		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:108697044G>A	uc004eod.3	-	4	1353	c.1077C>T	c.(1075-1077)ATC>ATT	p.I359I	GUCY2F_uc011msq.1_RNA	NM_001522	NP_001513	P51841	GUC2F_HUMAN	guanylate cyclase 2F precursor	359	Extracellular (Potential).				intracellular signal transduction|receptor guanylyl cyclase signaling pathway|visual perception	integral to plasma membrane|nuclear outer membrane	ATP binding|GTP binding|guanylate cyclase activity|protein kinase activity|receptor activity			lung(4)|breast(3)|central_nervous_system(1)	8						TGGCTTGTGCGATAAAGTAAA	0.418													5	7					0	0	0.000602	0	0
CHRDL1	91851	broad.mit.edu	37	X	109922606	109922606	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:109922606C>T	uc004eou.3	-	11	1553	c.1204G>A	c.(1204-1206)GAG>AAG	p.E402K	CHRDL1_uc004eov.2_Missense_Mutation_p.E391K|CHRDL1_uc004eow.2_Missense_Mutation_p.E400K|CHRDL1_uc010nps.2_Missense_Mutation_p.E401K|CHRDL1_uc004eot.2_Missense_Mutation_p.E321K|CHRDL1_uc011mss.1_Missense_Mutation_p.E316K	NM_001143981	NP_001137453	Q9BU40	CRDL1_HUMAN	chordin-like 1 isoform 1 precursor	394					BMP signaling pathway|cell differentiation|nervous system development|ossification	extracellular region					0						GGAAGCTCCTCAAACATCCTC	0.448													12	34					0	0	0.001855	0	0
TRPC5	7224	broad.mit.edu	37	X	111090643	111090644	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:111090643_111090644CC>TT	uc004epl.1	-	6	2317_2318	c.1398_1399GG>AA	c.(1396-1401)AGGGAG>AGAAAG	p.E467K	TRPC5_uc004epm.1_Missense_Mutation_p.E467K	NM_012471	NP_036603	Q9UL62	TRPC5_HUMAN	transient receptor potential cation channel,	467	Extracellular (Potential).				axon guidance	calcium channel complex|integral to plasma membrane	protein binding|store-operated calcium channel activity			urinary_tract(1)	1						TCCCATTCCTCCCTTGGACGAG	0.431													11	21					0	0	0.004672	0	0
ZCCHC16	340595	broad.mit.edu	37	X	111697971	111697971	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:111697971G>A	uc004epo.1	+	3	456	c.15G>A	c.(13-15)ACG>ACA	p.T5T		NM_001004308	NP_001004308	Q6ZR62	ZCH16_HUMAN	zinc finger, CCHC domain containing 16	5							nucleic acid binding|zinc ion binding			ovary(1)	1						AGAAGTGCACGAAATCATCAT	0.458													36	22					0	0	0.005524	0	0
ZCCHC16	340595	broad.mit.edu	37	X	111698178	111698178	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:111698178C>T	uc004epo.1	+	3	663	c.222C>T	c.(220-222)TTC>TTT	p.F74F		NM_001004308	NP_001004308	Q6ZR62	ZCH16_HUMAN	zinc finger, CCHC domain containing 16	74							nucleic acid binding|zinc ion binding			ovary(1)	1						GCTCAGAGTTCCTCACTCAGG	0.483													23	9					0	0	0.014323	0	0
MIR1298	100302153	broad.mit.edu	37	X	113949746	113949746	+	RNA	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:113949746C>T	hsa-mir-1298|MI0003938	+			c.97C>T			HTR2C_uc004epu.1_Intron|HTR2C_uc010nqc.1_Intron|HTR2C_uc004epv.1_Intron																	0						CTGAACTTTTCACTTTTCATG	0.408													10	6					0	0	0.008291	0	0
SLC6A14	11254	broad.mit.edu	37	X	115589994	115589994	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:115589994G>A	uc004eqi.2	+	14	1906	c.1802G>A	c.(1801-1803)AGA>AAA	p.R601K		NM_007231	NP_009162	Q9UN76	S6A14_HUMAN	solute carrier family 6 (amino acid	601	Cytoplasmic (Potential).				cellular amino acid metabolic process|response to toxin	integral to membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			ovary(2)|pancreas(1)	3					L-Proline(DB00172)	AGTTGCTGCAGACCAGCTTCT	0.378													36	16					0	0	0.005524	0	0
KLHL13	90293	broad.mit.edu	37	X	117043960	117043960	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:117043960G>A	uc004eql.2	-	5	732	c.670C>T	c.(670-672)CCT>TCT	p.P224S	KLHL13_uc004eqk.2_Missense_Mutation_p.P173S|KLHL13_uc011mtn.1_Missense_Mutation_p.P64S|KLHL13_uc011mto.1_Missense_Mutation_p.P218S|KLHL13_uc011mtp.1_Missense_Mutation_p.P226S|KLHL13_uc004eqm.2_Missense_Mutation_p.P173S|KLHL13_uc011mtq.1_Missense_Mutation_p.P208S	NM_033495	NP_277030	Q9P2N7	KLH13_HUMAN	kelch-like 13	224	BACK.				cytokinesis|mitosis|protein ubiquitination	Cul3-RING ubiquitin ligase complex				kidney(1)|skin(1)	2						AGCAATGCAGGAAAATTCTTC	0.438													39	16					0	0	0.006230	0	0
DOCK11	139818	broad.mit.edu	37	X	117718740	117718740	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:117718740G>A	uc004eqp.2	+	15	1701	c.1638G>A	c.(1636-1638)GGG>GGA	p.G546G	DOCK11_uc004eqq.2_Silent_p.G312G	NM_144658	NP_653259	Q5JSL3	DOC11_HUMAN	dedicator of cytokinesis 11	546					blood coagulation	cytosol	GTP binding			ovary(3)	3						ATCTGGATGGGAGATTTTCTC	0.338													33	15					0	0	0.013726	0	0
ZCCHC12	170261	broad.mit.edu	37	X	117960038	117960038	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:117960038G>A	uc004equ.2	+	4	1304	c.831G>A	c.(829-831)GTG>GTA	p.V277V		NM_173798	NP_776159	Q6PEW1	ZCH12_HUMAN	zinc finger, CCHC domain containing 12	277					regulation of transcription, DNA-dependent|transcription, DNA-dependent		nucleic acid binding|zinc ion binding			ovary(1)	1						ATGAGGATGTGATCCTGGTGG	0.572													22	18					0	0	0.014323	0	0
KIAA1210	57481	broad.mit.edu	37	X	118221678	118221678	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:118221678G>A	uc004era.3	-	11	3515	c.3515C>T	c.(3514-3516)TCA>TTA	p.S1172L		NM_020721	NP_065772	Q9ULL0	K1210_HUMAN	hypothetical protein LOC57481	1172										ovary(4)|skin(1)	5						CTCTAGTCGTGAGGTCATTTC	0.468													15	11					0	0	0.003163	0	0
NKRF	55922	broad.mit.edu	37	X	118725046	118725046	+	Silent	SNP	A	G	G	rs148494768		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:118725046A>G	uc004erq.2	-	2	995	c.342T>C	c.(340-342)TAT>TAC	p.Y114Y	NKRF_uc004err.2_Silent_p.Y114Y	NM_017544	NP_060014	O15226	NKRF_HUMAN	transcription factor NRF	114	Active repression domain.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|double-stranded RNA binding			ovary(1)|central_nervous_system(1)	2						ATGAATCACAATACTGAGAAT	0.423													37	19					0	0	0.006230	0	0
NKAP	79576	broad.mit.edu	37	X	119068457	119068457	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:119068457G>A	uc004esh.2	-	5	904	c.737C>T	c.(736-738)TCG>TTG	p.S246L	NKAP_uc004esg.2_Missense_Mutation_p.S133L	NM_024528	NP_078804	Q8N5F7	NKAP_HUMAN	NFKB activating protein	246	Necessary for interaction with CIR1.|Lys-rich.				negative regulation of transcription, DNA-dependent|Notch signaling pathway|positive regulation of alpha-beta T cell differentiation|transcription, DNA-dependent	cytoplasm|nucleus	chromatin binding|protein binding			ovary(2)	2						AAAAACTGACGATCTGTGTTT	0.184													15	4					0	0	0.002450	0	0
CUL4B	8450	broad.mit.edu	37	X	119674287	119674287	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:119674287G>A	uc004esw.2	-	13	2065	c.1628C>T	c.(1627-1629)GCC>GTC	p.A543V	CUL4B_uc010nqq.2_Missense_Mutation_p.A242V|CUL4B_uc004esv.2_Missense_Mutation_p.A525V	NM_003588	NP_003579	Q13620	CUL4B_HUMAN	cullin 4B isoform 1	543					cell cycle|DNA repair|ubiquitin-dependent protein catabolic process	Cul4B-RING ubiquitin ligase complex|nucleus	protein binding|ubiquitin protein ligase binding			lung(1)|central_nervous_system(1)|pancreas(1)	3						TTCTTTCATGGCATTGATAAA	0.313													6	17					0	0	0.003080	0	0
GRIA3	2892	broad.mit.edu	37	X	122459987	122459987	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:122459987G>A	uc004etq.3	+	5	912	c.619G>A	c.(619-621)GAA>AAA	p.E207K	GRIA3_uc004etr.3_Missense_Mutation_p.E207K|GRIA3_uc004ets.3_RNA|GRIA3_uc011muf.1_Missense_Mutation_p.E191K	NM_007325	NP_015564	P42263	GRIA3_HUMAN	glutamate receptor, ionotrophic, AMPA 3 isoform	207	Extracellular (Potential).				glutamate signaling pathway|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5					L-Glutamic Acid(DB00142)	GCGCATCATTGAAGAAATGGA	0.438													35	12					0	0	0.003271	0	0
GRIA3	2892	broad.mit.edu	37	X	122551295	122551295	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:122551295C>T	uc004etq.3	+	12	1836	c.1543C>T	c.(1543-1545)CGT>TGT	p.R515C	GRIA3_uc004etr.3_Missense_Mutation_p.R515C|GRIA3_uc004ets.3_RNA|GRIA3_uc011muf.1_Missense_Mutation_p.R499C	NM_007325	NP_015564	P42263	GRIA3_HUMAN	glutamate receptor, ionotrophic, AMPA 3 isoform	515	Extracellular (Potential).	Glutamate (By similarity).			glutamate signaling pathway|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5					L-Glutamic Acid(DB00142)	AACATTGGTCCGTGAAGAAGT	0.363													51	38					0	0	0.014410	0	0
GRIA3	2892	broad.mit.edu	37	X	122561843	122561843	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:122561843C>T	uc004etq.3	+	13	2222	c.1929C>T	c.(1927-1929)ATC>ATT	p.I643I	GRIA3_uc004etr.3_Silent_p.I643I|GRIA3_uc004ets.3_RNA	NM_007325	NP_015564	P42263	GRIA3_HUMAN	glutamate receptor, ionotrophic, AMPA 3 isoform	643	Helical; (Potential).				glutamate signaling pathway|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5					L-Glutamic Acid(DB00142)	TCACCCTGATCATAATTTCTT	0.453													49	27					0	0	0.014410	0	0
ODZ1	10178	broad.mit.edu	37	X	123654524	123654524	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:123654524C>T	uc004euj.2	-	18	3208	c.3144G>A	c.(3142-3144)ACG>ACA	p.T1048T	ODZ1_uc011muj.1_Silent_p.T1047T|ODZ1_uc010nqy.2_Silent_p.T1048T	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	1048	Extracellular (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						CTACAGGAATCGTTGAATGTG	0.493													45	16					0	0	0.014410	0	0
BCORL1	63035	broad.mit.edu	37	X	129189886	129189886	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:129189886G>A	uc004evb.1	+	13	5025	c.4911G>A	c.(4909-4911)AGG>AGA	p.R1637R	BCORL1_uc004evc.1_Silent_p.R473R	NM_021946	NP_068765	Q5H9F3	BCORL_HUMAN	BCL6 co-repressor-like 1	1637					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus				ovary(4)|breast(2)|lung(1)	7						TTTCCTCGAGGATCTTTCAGG	0.562													69	37					0	0	0.014410	0	0
RBMX2	51634	broad.mit.edu	37	X	129543258	129543258	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:129543258C>T	uc004evt.2	+	4	265	c.201C>T	c.(199-201)CTC>CTT	p.L67L		NM_016024	NP_057108	Q9Y388	RBMX2_HUMAN	RNA binding motif protein, X-linked 2	67	RRM.						nucleotide binding|RNA binding			breast(3)|ovary(1)	4						ACATTAATCTCGTGCGGGACA	0.318													9	25					0	0	0.008291	0	0
IGSF1	3547	broad.mit.edu	37	X	130415215	130415215	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:130415215C>T	uc004ewd.2	-	9	1861	c.1623G>A	c.(1621-1623)TGG>TGA	p.W541*	IGSF1_uc004ewe.3_Nonsense_Mutation_p.W530*|IGSF1_uc004ewf.2_Nonsense_Mutation_p.W521*	NM_001555	NP_001546	Q8N6C5	IGSF1_HUMAN	immunoglobulin superfamily, member 1 isoform 1	541	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	extracellular region|integral to membrane	inhibin beta-A binding|inhibin beta-B binding			ovary(3)|lung(1)|central_nervous_system(1)	5						TCCGACACTTCCACCTTATCC	0.483													68	32					0	0	0.014410	0	0
IGSF1	3547	broad.mit.edu	37	X	130415673	130415673	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:130415673G>A	uc004ewd.2	-	8	1730	c.1492C>T	c.(1492-1494)CGC>TGC	p.R498C	IGSF1_uc004ewe.3_Missense_Mutation_p.R487C|IGSF1_uc004ewf.2_Missense_Mutation_p.R478C	NM_001555	NP_001546	Q8N6C5	IGSF1_HUMAN	immunoglobulin superfamily, member 1 isoform 1	498	Extracellular (Potential).|Ig-like C2-type 5.				regulation of transcription, DNA-dependent	extracellular region|integral to membrane	inhibin beta-A binding|inhibin beta-B binding			ovary(3)|lung(1)|central_nervous_system(1)	5						GGCTCACTGCGATGTGACCAG	0.527													19	13					0	0	0.007413	0	0
OR13H1	347468	broad.mit.edu	37	X	130678425	130678425	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:130678425C>T	uc011muw.1	+	1	378	c.378C>T	c.(376-378)ATC>ATT	p.I126I	IGSF1_uc004ewf.2_Intron	NM_001004486	NP_001004486	Q8NG92	O13H1_HUMAN	olfactory receptor, family 13, subfamily H,	126	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Acute lymphoblastic leukemia(192;0.000636)					TGGTTGCTATCAGCAATCCCC	0.532													54	19					0	0	0.014410	0	0
MST4	51765	broad.mit.edu	37	X	131197485	131197485	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:131197485G>A	uc004ewk.1	+	4	599	c.298G>A	c.(298-300)GAA>AAA	p.E100K	MST4_uc004ewl.1_Missense_Mutation_p.E23K|MST4_uc011mux.1_Missense_Mutation_p.E122K|MST4_uc010nrj.1_Missense_Mutation_p.E100K|MST4_uc004ewm.1_Missense_Mutation_p.E100K	NM_016542	NP_057626	Q9P289	MST4_HUMAN	serine/threonine protein kinase MST4 isoform 1	100	Protein kinase.				cellular component disassembly involved in apoptosis|regulation of apoptosis	cytosol|Golgi membrane	ATP binding|identical protein binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(3)|lung(3)|stomach(2)|upper_aerodigestive_tract(1)	9	Acute lymphoblastic leukemia(192;0.000127)					GATAATAATGGAATACCTGGG	0.323													25	20					0	0	0.007291	0	0
HS6ST2	90161	broad.mit.edu	37	X	131762506	131762506	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:131762506C>T	uc011mve.1	-	4	1979	c.1563G>A	c.(1561-1563)CTG>CTA	p.L521L	HS6ST2_uc011mvb.1_Silent_p.L415L|HS6ST2_uc011mvc.1_Silent_p.L375L|HS6ST2_uc011mvd.1_Silent_p.L561L|HS6ST2_uc011mva.1_Silent_p.L247L	NM_147175	NP_671704	Q96MM7	H6ST2_HUMAN	heparan sulfate 6-O-sulfotransferase 2 isoform	521	Lumenal (Potential).					integral to membrane	sulfotransferase activity				0	Acute lymphoblastic leukemia(192;0.000127)					GCCTTCCCTTCAGAAATTTGC	0.363													35	17					0	0	0.013726	0	0
USP26	83844	broad.mit.edu	37	X	132159894	132159894	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:132159894C>T	uc010nrm.1	-	6	2825	c.2355G>A	c.(2353-2355)AGG>AGA	p.R785R	USP26_uc011mvf.1_Silent_p.R785R	NM_031907	NP_114113	Q9BXU7	UBP26_HUMAN	ubiquitin-specific protease 26	785					protein deubiquitination|ubiquitin-dependent protein catabolic process	nucleus	cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(3)|central_nervous_system(3)|kidney(1)|liver(1)	8	Acute lymphoblastic leukemia(192;0.000127)					GTAGGGAATTCCTGTTAGACT	0.398													41	35					0	0	0.011902	0	0
GPC3	2719	broad.mit.edu	37	X	132730510	132730510	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:132730510C>T	uc004exe.1	-	7	1721	c.1531G>A	c.(1531-1533)GAT>AAT	p.D511N	GPC3_uc004exd.1_Missense_Mutation_p.D383N|GPC3_uc010nrn.1_Missense_Mutation_p.D534N|GPC3_uc011mvh.1_Missense_Mutation_p.D495N|GPC3_uc010nro.1_Missense_Mutation_p.D457N	NM_004484	NP_004475	P51654	GPC3_HUMAN	glypican 3 isoform 2 precursor	511						extracellular space|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding|peptidyl-dipeptidase inhibitor activity			lung(2)|prostate(1)|breast(1)|skin(1)	5	Acute lymphoblastic leukemia(192;0.000127)					ATCATTCCATCACCAGAGCCT	0.428			T|D|Mis|N|F|S			Wilms tumour			Simpson-Golabi-Behmel_syndrome				38	23					0	0	0.009718	0	0
SAGE1	55511	broad.mit.edu	37	X	134990652	134990652	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:134990652C>T	uc004ezh.2	+	12	1484	c.1317C>T	c.(1315-1317)CAC>CAT	p.H439H	SAGE1_uc010nry.1_Silent_p.H408H|SAGE1_uc011mvv.1_Intron	NM_018666	NP_061136	Q9NXZ1	SAGE1_HUMAN	sarcoma antigen 1	439										ovary(2)|skin(1)	3	Acute lymphoblastic leukemia(192;0.000127)					CCGTCAATCACCATGTCCATG	0.418													36	16					0	0	0.004289	0	0
SAGE1	55511	broad.mit.edu	37	X	134993485	134993485	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:134993485G>A	uc004ezh.2	+	17	2307	c.2140G>A	c.(2140-2142)GAT>AAT	p.D714N	SAGE1_uc010nry.1_Missense_Mutation_p.D683N|SAGE1_uc011mvv.1_Missense_Mutation_p.D338N	NM_018666	NP_061136	Q9NXZ1	SAGE1_HUMAN	sarcoma antigen 1	714										ovary(2)|skin(1)	3	Acute lymphoblastic leukemia(192;0.000127)					AAGTACCAGGGATCTGTGTAT	0.433													50	16					0	0	0.014410	0	0
GPR112	139378	broad.mit.edu	37	X	135428876	135428876	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:135428876C>T	uc004ezu.1	+	6	3302	c.3011C>T	c.(3010-3012)TCC>TTC	p.S1004F	GPR112_uc010nsb.1_Missense_Mutation_p.S799F|GPR112_uc010nsc.1_Missense_Mutation_p.S771F	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	1004	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					GCTGCTCATTCCTCAGCAACC	0.493													58	26					0	0	0.014410	0	0
VGLL1	51442	broad.mit.edu	37	X	135618372	135618372	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:135618372G>A	uc004ezy.2	+	2	363	c.193G>A	c.(193-195)GAA>AAA	p.E65K		NM_016267	NP_057351	Q99990	VGLL1_HUMAN	vestigial like 1	65					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	transcription coactivator activity				0	Acute lymphoblastic leukemia(192;0.000127)					GAGTCAGAGTGAAGGTGTGAT	0.527													33	13					0	0	0.006999	0	0
GPR101	83550	broad.mit.edu	37	X	136112662	136112662	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:136112662C>T	uc011mwh.1	-	1	1172	c.1172G>A	c.(1171-1173)AGG>AAG	p.R391K		NM_054021	NP_473362	Q96P66	GP101_HUMAN	G protein-coupled receptor 101	391	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)|lung(1)|skin(1)	5	Acute lymphoblastic leukemia(192;0.000127)					CTGGTAGCACCTGGGCAGAGG	0.537													25	21					0	0	0.004656	0	0
GPR101	83550	broad.mit.edu	37	X	136112786	136112786	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:136112786C>T	uc011mwh.1	-	1	1048	c.1048G>A	c.(1048-1050)GAA>AAA	p.E350K		NM_054021	NP_473362	Q96P66	GP101_HUMAN	G protein-coupled receptor 101	350	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)|lung(1)|skin(1)	5	Acute lymphoblastic leukemia(192;0.000127)					ATGTCATCTTCACCCAAGTCA	0.532													75	39					0	0	0.014410	0	0
MCF2	4168	broad.mit.edu	37	X	138684654	138684655	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:138684654_138684655CC>TT	uc004fau.2	-	16	2040_2041	c.1746_1747GG>AA	c.(1744-1749)AAGGAT>AAAAAT	p.D583N	MCF2_uc004fav.2_Missense_Mutation_p.D599N|MCF2_uc011mwl.1_Missense_Mutation_p.D560N|MCF2_uc010nsh.1_Missense_Mutation_p.D583N|MCF2_uc011mwm.1_Missense_Mutation_p.D544N|MCF2_uc011mwn.1_Missense_Mutation_p.D728N|MCF2_uc004faw.2_Missense_Mutation_p.D643N|MCF2_uc011mwo.1_Missense_Mutation_p.D659N	NM_005369	NP_005360	P10911	MCF2_HUMAN	MCF.2 cell line derived transforming sequence	583	DH.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytoskeleton|cytosol|membrane|membrane fraction	protein binding|Rho guanyl-nucleotide exchange factor activity			lung(1)|pleura(1)	2	Acute lymphoblastic leukemia(192;0.000127)					TGAAAATCATCCTTCTGTGATA	0.332													34	14					0	0	0.004672	0	0
MCF2	4168	broad.mit.edu	37	X	138729051	138729051	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:138729051T>C	uc011mwn.1	-	3	298	c.292A>G	c.(292-294)AAG>GAG	p.K98E	MCF2_uc004faw.2_Missense_Mutation_p.K13E|MCF2_uc011mwo.1_Missense_Mutation_p.K13E			P10911	MCF2_HUMAN	SubName: Full=MCF.2 cell line derived transforming sequence;	Error:Variant_position_missing_in_P10911_after_alignment					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytoskeleton|cytosol|membrane|membrane fraction	protein binding|Rho guanyl-nucleotide exchange factor activity			lung(1)|pleura(1)	2	Acute lymphoblastic leukemia(192;0.000127)					GCATTGTCCTTTCCCCGGCCA	0.333													6	5					0	0	0.004482	0	0
CXorf66	347487	broad.mit.edu	37	X	139038210	139038210	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:139038210G>A	uc004fbb.2	-	3	953	c.931C>T	c.(931-933)CGT>TGT	p.R311C		NM_001013403	NP_001013421	Q5JRM2	CX066_HUMAN	hypothetical protein LOC347487 precursor	311	Cytoplasmic (Potential).					integral to membrane					0						TCTAACTTACGAAAGGACCTG	0.368													26	30					0	0	0.006320	0	0
CXorf66	347487	broad.mit.edu	37	X	139040376	139040376	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:139040376C>T	uc004fbb.2	-	2	111	c.89G>A	c.(88-90)GGA>GAA	p.G30E		NM_001013403	NP_001013421	Q5JRM2	CX066_HUMAN	hypothetical protein LOC347487 precursor	30	Extracellular (Potential).					integral to membrane					0						AGGTTTATCTCCTGCAAAGAG	0.308													37	22					0	0	0.004878	0	0
CDR1	1038	broad.mit.edu	37	X	139866204	139866204	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:139866204C>T	uc004fbg.1	-	1	520	c.328G>A	c.(328-330)GAT>AAT	p.D110N	uc004fbf.1_RNA	NM_004065	NP_004056	P51861	CDR1_HUMAN	cerebellar degeneration-related protein 1,	110	18.|23 X 6 AA approximate repeats.										0	Acute lymphoblastic leukemia(192;7.65e-05)	Lung SC(4;0.051)				TCCAAAAAATCCGGGTCTTCC	0.453													39	10					0	0	0.005524	0	0
MAGEC1	9947	broad.mit.edu	37	X	140995039	140995039	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:140995039C>T	uc004fbt.2	+	4	2135	c.1849C>T	c.(1849-1851)CAG>TAG	p.Q617*	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	617							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					GAGTCCTCTTCAGGGGGAGGA	0.572										HNSCC(15;0.026)			42	116					0	0	0.007835	0	0
MAGEC2	51438	broad.mit.edu	37	X	141290979	141290979	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:141290979G>A	uc004fbu.1	-	3	1143	c.795C>T	c.(793-795)TTC>TTT	p.F265F		NM_016249	NP_057333	Q9UBF1	MAGC2_HUMAN	melanoma antigen family C, 2	265	MAGE.					cytoplasm|nucleus				breast(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)					CCCCATAGACGAAGTGCTCCC	0.507										HNSCC(46;0.14)			47	13					0	0	0.014410	0	0
MAGEC2	51438	broad.mit.edu	37	X	141290982	141290982	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:141290982G>A	uc004fbu.1	-	3	1140	c.792C>T	c.(790-792)CAC>CAT	p.H264H		NM_016249	NP_057333	Q9UBF1	MAGC2_HUMAN	melanoma antigen family C, 2	264	MAGE.					cytoplasm|nucleus				breast(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)					CATAGACGAAGTGCTCCCTCC	0.507										HNSCC(46;0.14)			49	13					0	0	0.014410	0	0
MAGEC2	51438	broad.mit.edu	37	X	141291223	141291223	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:141291223C>T	uc004fbu.1	-	3	899	c.551G>A	c.(550-552)AGA>AAA	p.R184K		NM_016249	NP_057333	Q9UBF1	MAGC2_HUMAN	melanoma antigen family C, 2	184	MAGE.					cytoplasm|nucleus				breast(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)					CTCACGGGCTCTCTTGAGTAT	0.483										HNSCC(46;0.14)			71	40					0	0	0.014410	0	0
SLITRK4	139065	broad.mit.edu	37	X	142716674	142716674	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:142716674G>A	uc004fbx.2	-	2	2627	c.2251C>T	c.(2251-2253)CCT>TCT	p.P751S	SLITRK4_uc004fby.2_Missense_Mutation_p.P751S	NM_173078	NP_775101	Q8IW52	SLIK4_HUMAN	slit and trk like 4 protein precursor	751	Cytoplasmic (Potential).					integral to membrane				upper_aerodigestive_tract(1)|large_intestine(1)	2	Acute lymphoblastic leukemia(192;6.56e-05)					TCCCTGCTAGGGAATAATTCA	0.383													15	44					0	0	0.003163	0	0
SLITRK4	139065	broad.mit.edu	37	X	142716900	142716900	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:142716900G>A	uc004fbx.2	-	2	2401	c.2025C>T	c.(2023-2025)ACC>ACT	p.T675T	SLITRK4_uc004fby.2_Silent_p.T675T	NM_173078	NP_775101	Q8IW52	SLIK4_HUMAN	slit and trk like 4 protein precursor	675	Cytoplasmic (Potential).					integral to membrane				upper_aerodigestive_tract(1)|large_intestine(1)	2	Acute lymphoblastic leukemia(192;6.56e-05)					CTTTTTTATTGGTTTTGTGGT	0.483													52	23					0	0	0.014410	0	0
SLITRK4	139065	broad.mit.edu	37	X	142717743	142717743	+	Silent	SNP	T	G	G			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:142717743T>G	uc004fbx.2	-	2	1558	c.1182A>C	c.(1180-1182)GTA>GTC	p.V394V	SLITRK4_uc004fby.2_Silent_p.V394V	NM_173078	NP_775101	Q8IW52	SLIK4_HUMAN	slit and trk like 4 protein precursor	394	Extracellular (Potential).|LRR 7.					integral to membrane				upper_aerodigestive_tract(1)|large_intestine(1)	2	Acute lymphoblastic leukemia(192;6.56e-05)					TGAAGTCTGATACGTCCACAT	0.393													43	21					0	0	0.013114	0	0
SPANXN2	494119	broad.mit.edu	37	X	142795419	142795419	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:142795419C>T	uc004fbz.2	-	2	1013	c.259G>A	c.(259-261)GAA>AAA	p.E87K		NM_001009615	NP_001009615	Q5MJ10	SPXN2_HUMAN	SPANX-N2 protein	87										ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					TCTAGGCCTTCGTCCTCCTCC	0.488													122	78					0	0	0.014410	0	0
SPANXN2	494119	broad.mit.edu	37	X	142795459	142795459	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:142795459G>A	uc004fbz.2	-	2	973	c.219C>T	c.(217-219)TCC>TCT	p.S73S		NM_001009615	NP_001009615	Q5MJ10	SPXN2_HUMAN	SPANX-N2 protein	73										ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					AGTTCTCTCGGGACTGGTCCT	0.433													85	49					0	0	0.014410	0	0
AFF2	2334	broad.mit.edu	37	X	147743594	147743594	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:147743594C>T	uc004fcp.2	+	3	825	c.346C>T	c.(346-348)CCA>TCA	p.P116S	AFF2_uc004fco.2_Missense_Mutation_p.P112S|AFF2_uc004fcq.2_Missense_Mutation_p.P112S|AFF2_uc004fcr.2_Missense_Mutation_p.P112S|AFF2_uc011mxb.1_Missense_Mutation_p.P116S|AFF2_uc004fcs.2_Missense_Mutation_p.P112S	NM_002025	NP_002016	P51816	AFF2_HUMAN	fragile X mental retardation 2	116					brain development|mRNA processing|regulation of RNA splicing|RNA splicing	nuclear speck	G-quadruplex RNA binding|protein binding			ovary(3)|pancreas(2)	5	Acute lymphoblastic leukemia(192;6.56e-05)					AAGCTTTTTTCCAGAACAAAA	0.393													94	51					0	0	0.014410	0	0
AFF2	2334	broad.mit.edu	37	X	148037391	148037391	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:148037391G>A	uc004fcp.2	+	11	2295	c.1816G>A	c.(1816-1818)GAA>AAA	p.E606K	AFF2_uc004fcq.2_Missense_Mutation_p.E596K|AFF2_uc004fcr.2_Missense_Mutation_p.E567K|AFF2_uc011mxb.1_Missense_Mutation_p.E571K|AFF2_uc004fcs.2_Missense_Mutation_p.E573K|AFF2_uc011mxc.1_Missense_Mutation_p.E247K	NM_002025	NP_002016	P51816	AFF2_HUMAN	fragile X mental retardation 2	606					brain development|mRNA processing|regulation of RNA splicing|RNA splicing	nuclear speck	G-quadruplex RNA binding|protein binding			ovary(3)|pancreas(2)	5	Acute lymphoblastic leukemia(192;6.56e-05)					GAAAATTCCAGAAACAAAGGC	0.468													47	20					0	0	0.014410	0	0
AFF2	2334	broad.mit.edu	37	X	148072755	148072755	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:148072755C>T	uc004fcp.2	+	21	4308	c.3829C>T	c.(3829-3831)CTG>TTG	p.L1277L	AFF2_uc004fcq.2_Silent_p.L1267L|AFF2_uc004fcr.2_Silent_p.L1238L|AFF2_uc011mxb.1_Silent_p.L1242L|AFF2_uc004fcs.2_Silent_p.L1242L|AFF2_uc011mxc.1_Silent_p.L918L	NM_002025	NP_002016	P51816	AFF2_HUMAN	fragile X mental retardation 2	1277					brain development|mRNA processing|regulation of RNA splicing|RNA splicing	nuclear speck	G-quadruplex RNA binding|protein binding			ovary(3)|pancreas(2)	5	Acute lymphoblastic leukemia(192;6.56e-05)					CTTTGGTGATCTGGACACGCT	0.488													32	15					0	0	0.010818	0	0
MAGEA11	4110	broad.mit.edu	37	X	148798242	148798242	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:148798242G>A	uc004fdq.2	+	5	1198	c.1096G>A	c.(1096-1098)GAA>AAA	p.E366K	HSFX2_uc004fdl.2_Intron|HSFX1_uc004fdm.2_Intron|MAGEA11_uc004fdr.2_Missense_Mutation_p.E337K	NM_005366	NP_005357	P43364	MAGAB_HUMAN	melanoma antigen family A, 11 isoform a	366	MAGE.					cytoplasm|nucleus	protein binding			ovary(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)|Colorectal(9;0.0662)					TTGGGTGCAGGAAAAGTACCT	0.557													70	42					0	0	0.014410	0	0
GPR50	9248	broad.mit.edu	37	X	150348464	150348464	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:150348464G>A	uc010ntg.1	+	2	544	c.409G>A	c.(409-411)GAA>AAA	p.E137K	uc004fes.1_5'Flank|GPR50_uc011myc.1_Missense_Mutation_p.E137K	NM_004224	NP_004215	Q13585	MTR1L_HUMAN	G protein-coupled receptor 50	137	Cytoplasmic (Potential).				cell-cell signaling	integral to plasma membrane	melatonin receptor activity			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					CCTCCAGTACGAACGGATCTT	0.542													30	14					0	0	0.008361	0	0
GPR50	9248	broad.mit.edu	37	X	150349680	150349680	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:150349680C>T	uc010ntg.1	+	2	1760	c.1625C>T	c.(1624-1626)TCC>TTC	p.S542F		NM_004224	NP_004215	Q13585	MTR1L_HUMAN	G protein-coupled receptor 50	542	Cytoplasmic (Potential).|Pro-rich.				cell-cell signaling	integral to plasma membrane	melatonin receptor activity			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					CTCTCTGCCTCCCATTGCCCC	0.637													37	13					0	0	0.004289	0	0
MAGEA4	4103	broad.mit.edu	37	X	151092726	151092726	+	Missense_Mutation	SNP	T	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:151092726T>A	uc004fez.2	+	3	746	c.590T>A	c.(589-591)TTT>TAT	p.F197Y	MAGEA4_uc004ffa.2_Missense_Mutation_p.F197Y|MAGEA4_uc004ffb.2_Missense_Mutation_p.F197Y|MAGEA4_uc004ffc.2_Missense_Mutation_p.F197Y|MAGEA4_uc004ffd.2_Missense_Mutation_p.F197Y	NM_002362	NP_002353	P43358	MAGA4_HUMAN	melanoma antigen family A, 4	197	MAGE.						protein binding			ovary(1)|breast(1)|central_nervous_system(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					AATCAGATCTTTCCCAAGACA	0.562													12	50					0	0	0.010729	0	0
GABRQ	55879	broad.mit.edu	37	X	151818227	151818227	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:151818227C>T	uc004ffp.1	+	6	653	c.633C>T	c.(631-633)ATC>ATT	p.I211I		NM_018558	NP_061028	Q9UN88	GBRT_HUMAN	gamma-aminobutyric acid (GABA) receptor, theta	211	Extracellular (Potential).					cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity|neurotransmitter transporter activity			ovary(2)|pancreas(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					TTGAAGACATCATATTATTCT	0.448													27	20					0	0	0.007291	0	0
MAGEA6	4105	broad.mit.edu	37	X	151870060	151870060	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:151870060C>T	uc004ffq.1	+	3	944	c.750C>T	c.(748-750)TTC>TTT	p.F250F	MAGEA6_uc004ffr.1_Silent_p.F250F|MAGEA2_uc010nto.2_Intron	NM_005363	NP_005354	P43360	MAGA6_HUMAN	melanoma antigen family A, 6	250	MAGE.						protein binding				0	Acute lymphoblastic leukemia(192;6.56e-05)					CCCAATATTTCGTGCAGGAAA	0.537													80	24					0	0	0.014410	0	0
MAGEA3	4102	broad.mit.edu	37	X	151935935	151935935	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:151935935G>A	uc004fgp.2	-	3	441	c.232C>T	c.(232-234)CCT>TCT	p.P78S		NM_005362	NP_005353	P43357	MAGA3_HUMAN	melanoma antigen family A, 3	78											0	Acute lymphoblastic leukemia(192;6.56e-05)					CTCCAGAGAGGGTAGTTCATG	0.592													14	7					0	0	0.006122	0	0
MAGEA1	4100	broad.mit.edu	37	X	152482329	152482329	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:152482329C>T	uc004fhf.2	-	3	902	c.682G>A	c.(682-684)GAG>AAG	p.E228K		NM_004988	NP_004979	P43355	MAGA1_HUMAN	melanoma antigen family A, 1	228	MAGE.					cytoplasm|plasma membrane				central_nervous_system(7)|ovary(1)|lung(1)|breast(1)	10	all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					GCACTGTGCTCCCTCCCATCA	0.572													33	16					0	0	0.004289	0	0
MAGEA1	4100	broad.mit.edu	37	X	152482399	152482399	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:152482399C>T	uc004fhf.2	-	3	832	c.612G>A	c.(610-612)ATG>ATA	p.M204I		NM_004988	NP_004979	P43355	MAGA1_HUMAN	melanoma antigen family A, 1	204	MAGE.					cytoplasm|plasma membrane				central_nervous_system(7)|ovary(1)|lung(1)|breast(1)	10	all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					GGCCGCCCTCCATTGCAATCA	0.547													34	17					0	0	0.004878	0	0
ATP2B3	492	broad.mit.edu	37	X	152825335	152825335	+	Missense_Mutation	SNP	T	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:152825335T>A	uc004fht.1	+	16	2900	c.2774T>A	c.(2773-2775)ATG>AAG	p.M925K	ATP2B3_uc004fhs.1_Missense_Mutation_p.M925K|ATP2B3_uc010nuf.1_5'Flank|ATP2B3_uc004fhu.1_5'Flank	NM_001001344	NP_001001344	Q16720	AT2B3_HUMAN	plasma membrane calcium ATPase 3 isoform 3b	925	Helical; (Potential).				ATP biosynthetic process|platelet activation	integral to membrane|plasma membrane	ATP binding|calcium-transporting ATPase activity|calmodulin binding|metal ion binding			pancreas(1)	1	all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					TCCCGCACCATGATGAAGAAC	0.637													13	7					0	0	0.001855	0	0
IDH3G	3421	broad.mit.edu	37	X	153052286	153052286	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:153052286G>A	uc004fip.2	-	10	1080	c.894C>T	c.(892-894)AAC>AAT	p.N298N	IDH3G_uc004fio.2_Silent_p.N240N|IDH3G_uc004fiq.2_Silent_p.N298N|IDH3G_uc010num.2_Silent_p.N240N|IDH3G_uc004fir.2_Silent_p.N240N|IDH3G_uc004fit.1_Silent_p.N298N|IDH3G_uc004fis.2_Silent_p.N240N|IDH3G_uc004fiu.2_Silent_p.N74N	NM_004135	NP_004126	P51553	IDH3G_HUMAN	isocitrate dehydrogenase 3 (NAD+) gamma isoform	298					carbohydrate metabolic process|isocitrate metabolic process|tricarboxylic acid cycle	mitochondrial matrix|nucleolus	ATP binding|isocitrate dehydrogenase (NAD+) activity|magnesium ion binding|NAD binding				0	all_hematologic(71;4.25e-06)|all_lung(58;3.83e-05)|Lung NSC(58;5.54e-05)|Acute lymphoblastic leukemia(192;6.56e-05)				NADH(DB00157)	CATGGCCATAGTTGGCCCCAG	0.517													36	20					0	0	0.004878	0	0
HCFC1	3054	broad.mit.edu	37	X	153222475	153222475	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:153222475G>A	uc004fjp.2	-	14	2918	c.2390C>T	c.(2389-2391)ACC>ATC	p.T797I		NM_005334	NP_005325	P51610	HCFC1_HUMAN	host cell factor 1	797	Interaction with ZBTB17.				cell cycle|interspecies interaction between organisms|positive regulation of cell cycle|positive regulation of gene expression|protein stabilization|reactivation of latent virus|regulation of protein complex assembly|transcription from RNA polymerase II promoter	mitochondrion|MLL1 complex|MLL5-L complex|Set1C/COMPASS complex	chromatin binding|identical protein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			ovary(2)	2	all_cancers(53;6.23e-16)|all_epithelial(53;5.61e-10)|all_lung(58;3.99e-07)|Lung NSC(58;5.02e-07)|all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					GGTGATGATGGTGATGGGGGA	0.602													58	30					0	0	0.014410	0	0
OPN1MW	2652	broad.mit.edu	37	X	153490621	153490621	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:153490621C>T	uc004fkd.2	+	2	439	c.357C>T	c.(355-357)TTC>TTT	p.F119F		NM_000513	NP_000504	P04001	OPSG_HUMAN	opsin 1 (cone pigments), medium-wave-sensitive	119	Extracellular.				phototransduction|protein-chromophore linkage|visual perception	integral to plasma membrane	G-protein coupled receptor activity|photoreceptor activity				0	all_cancers(53;1.83e-16)|all_epithelial(53;2.73e-10)|all_lung(58;6.39e-07)|Lung NSC(58;8.37e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					ATGGCTACTTCGTGCTGGGCC	0.607													36	53					0	0	0.014410	0	0
TKTL1	8277	broad.mit.edu	37	X	153556195	153556195	+	Silent	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:153556195C>T	uc004fkg.2	+	12	1695	c.1509C>T	c.(1507-1509)ATC>ATT	p.I503I	TKTL1_uc011mzl.1_Silent_p.I497I|TKTL1_uc011mzm.1_Silent_p.I299I|TKTL1_uc004fkh.2_Silent_p.I447I	NM_012253	NP_036385	P51854	TKTL1_HUMAN	transketolase-like 1 isoform a	503					glucose catabolic process|thiamine metabolic process	cytoplasm|nucleus	metal ion binding|transketolase activity			ovary(3)|skin(1)	4	all_cancers(53;5.05e-16)|all_epithelial(53;1.82e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					ATATTTTTATCCGTGTCATCG	0.453													68	40					0	0	0.014410	0	0
FLNA	2316	broad.mit.edu	37	X	153581488	153581488	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:153581488G>A	uc004fkk.2	-	38	6356	c.6107C>T	c.(6106-6108)CCG>CTG	p.P2036L	FLNA_uc004fki.2_Missense_Mutation_p.P79L|FLNA_uc011mzn.1_Missense_Mutation_p.P169L|FLNA_uc010nuu.1_Missense_Mutation_p.P2028L	NM_001110556	NP_001104026	P21333	FLNA_HUMAN	filamin A, alpha isoform 2	2036	Filamin 18.				actin crosslink formation|actin cytoskeleton reorganization|cell junction assembly|cytoplasmic sequestering of protein|establishment of protein localization|inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|negative regulation of protein catabolic process|negative regulation of sequence-specific DNA binding transcription factor activity|platelet activation|platelet degranulation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of transcription factor import into nucleus|protein localization at cell surface|protein stabilization|receptor clustering	cell cortex|cytosol|extracellular region|nucleus|plasma membrane	actin filament binding|Fc-gamma receptor I complex binding|glycoprotein binding|GTP-Ral binding|protein homodimerization activity|Rac GTPase binding|signal transducer activity|transcription factor binding			breast(6)	6	all_cancers(53;3.7e-16)|all_epithelial(53;2.97e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					GATCACCACCGGGATGGGGCT	0.587													24	8					0	0	0.003330	0	0
FLNA	2316	broad.mit.edu	37	X	153582370	153582370	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:153582370G>A	uc004fkk.2	-	35	5848	c.5599C>T	c.(5599-5601)CAT>TAT	p.H1867Y	FLNA_uc004fki.2_5'UTR|FLNA_uc011mzn.1_Missense_Mutation_p.H58Y|FLNA_uc010nuu.1_Missense_Mutation_p.H1859Y	NM_001110556	NP_001104026	P21333	FLNA_HUMAN	filamin A, alpha isoform 2	1867	Filamin 17.				actin crosslink formation|actin cytoskeleton reorganization|cell junction assembly|cytoplasmic sequestering of protein|establishment of protein localization|inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|negative regulation of protein catabolic process|negative regulation of sequence-specific DNA binding transcription factor activity|platelet activation|platelet degranulation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of transcription factor import into nucleus|protein localization at cell surface|protein stabilization|receptor clustering	cell cortex|cytosol|extracellular region|nucleus|plasma membrane	actin filament binding|Fc-gamma receptor I complex binding|glycoprotein binding|GTP-Ral binding|protein homodimerization activity|Rac GTPase binding|signal transducer activity|transcription factor binding			breast(6)	6	all_cancers(53;3.7e-16)|all_epithelial(53;2.97e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					GCAGTGACATGGCCACAGTTG	0.572											OREG0003596	type=REGULATORY REGION|Gene=BC028089|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	24	12					0	0	0.002780	0	0
FLNA	2316	broad.mit.edu	37	X	153594969	153594969	+	Silent	SNP	G	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:153594969G>A	uc004fkk.2	-	7	1275	c.1026C>T	c.(1024-1026)TTC>TTT	p.F342F	FLNA_uc010nuu.1_Silent_p.F342F	NM_001110556	NP_001104026	P21333	FLNA_HUMAN	filamin A, alpha isoform 2	342	Filamin 1.				actin crosslink formation|actin cytoskeleton reorganization|cell junction assembly|cytoplasmic sequestering of protein|establishment of protein localization|inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|negative regulation of protein catabolic process|negative regulation of sequence-specific DNA binding transcription factor activity|platelet activation|platelet degranulation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of transcription factor import into nucleus|protein localization at cell surface|protein stabilization|receptor clustering	cell cortex|cytosol|extracellular region|nucleus|plasma membrane	actin filament binding|Fc-gamma receptor I complex binding|glycoprotein binding|GTP-Ral binding|protein homodimerization activity|Rac GTPase binding|signal transducer activity|transcription factor binding			breast(6)	6	all_cancers(53;3.7e-16)|all_epithelial(53;2.97e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					ACCAGACGGAGAAGGTGCGGT	0.627													22	18					0	0	0.003330	0	0
F8	2157	broad.mit.edu	37	X	154159406	154159406	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:154159406C>T	uc004fmt.2	-	14	2830	c.2659G>A	c.(2659-2661)GCA>ACA	p.A887T		NM_000132	NP_000123	P00451	FA8_HUMAN	coagulation factor VIII isoform a precursor	887	B.				acute-phase response|blood coagulation, intrinsic pathway|cell adhesion|platelet activation|platelet degranulation	extracellular space|plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity|protein binding			ovary(5)|large_intestine(2)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	11	all_cancers(53;7.19e-17)|all_epithelial(53;9.83e-11)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)				Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Drotrecogin alfa(DB00055)	AACTCTGTTGCTGCAGTTGTC	0.413													13	11					0	0	0.002450	0	0
PTPRF	5792	broad.mit.edu	37	1	44069540	44069542	+	In_Frame_Del	DEL	AGG	-	-			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:44069540_44069542delAGG	uc001cjr.2	+	16	3057_3059	c.2717_2719delAGG	c.(2716-2721)AAGGAG>AAG	p.E907del	PTPRF_uc001cjs.2_In_Frame_Del_p.E898del|PTPRF_uc001cju.2_Intron|PTPRF_uc009vwt.2_In_Frame_Del_p.E467del|PTPRF_uc001cjv.2_In_Frame_Del_p.E367del|PTPRF_uc001cjw.2_In_Frame_Del_p.E133del	NM_002840	NP_002831	P10586	PTPRF_HUMAN	protein tyrosine phosphatase, receptor type, F	907	Extracellular (Potential).|Fibronectin type-III 6.				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|skin(3)|lung(1)|kidney(1)|central_nervous_system(1)	10	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				GAGTTCGAGAAGGAGATCAGGAC	0.616													16	58	---	---	---	---					
KCNN3	3782	broad.mit.edu	37	1	154842331	154842333	+	In_Frame_Del	DEL	TGC	-	-			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:154842331_154842333delTGC	uc001ffp.2	-	1	422_424	c.108_110delGCA	c.(106-111)CAGCAA>CAA	p.36_37QQ>Q	KCNN3_uc009wox.1_In_Frame_Del_p.36_37QQ>Q	NM_002249	NP_002240	Q9UGI6	KCNN3_HUMAN	small conductance calcium-activated potassium	36_37	Poly-Gln.					integral to membrane	calmodulin binding			lung(1)	1	all_lung(78;2.29e-27)|all_hematologic(923;0.088)|Hepatocellular(266;0.108)|all_neural(408;0.245)		BRCA - Breast invasive adenocarcinoma(34;0.00819)			ctgctgctgttgctgctgctgct	0.236													2	4	---	---	---	---					
RALGPS2	55103	broad.mit.edu	37	1	178846645	178846646	+	In_Frame_Ins	INS	-	AGATAT	AGATAT			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:178846645_178846646insAGATAT	uc001glz.2	+	9	958_959	c.620_621insAGATAT	c.(619-621)TCA>TCAGATATA	p.207_208insDI	RALGPS2_uc001gly.1_In_Frame_Ins_p.207_208insDI|RALGPS2_uc010pnb.1_In_Frame_Ins_p.207_208insDI	NM_152663	NP_689876	Q86X27	RGPS2_HUMAN	Ral GEF with PH domain and SH3 binding motif 2	207_208	Ras-GEF.				small GTPase mediated signal transduction	cytoplasm|plasma membrane	guanyl-nucleotide exchange factor activity|protein binding				0						ATCTATTTGTCAGATTTAACAT	0.337													9	30	---	---	---	---					
CFH	3075	broad.mit.edu	37	1	196706058	196706059	+	Frame_Shift_Ins	INS	-	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr1:196706058_196706059insA	uc001gtj.3	+	16	2758_2759	c.2518_2519insA	c.(2518-2520)CAAfs	p.Q840fs		NM_000186	NP_000177	P08603	CFAH_HUMAN	complement factor H isoform a precursor	840	Sushi 14.				complement activation, alternative pathway	extracellular space				skin(4)|ovary(1)|breast(1)	6						TGTTCTTTGCCAAGAAAATTAT	0.371													11	29	---	---	---	---					
HOXC9	3225	broad.mit.edu	37	12	54394446	54394447	+	Frame_Shift_Ins	INS	-	T	T			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:54394446_54394447insT	uc001sep.2	+	2	572_573	c.474_475insT	c.(472-477)CCCTCGfs	p.P158fs	HOXC9_uc001seq.2_Frame_Shift_Ins_p.P158fs	NM_006897	NP_008828	P31274	HXC9_HUMAN	homeobox C9	158_159					multicellular organismal development	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			large_intestine(1)|pancreas(1)|skin(1)	3						AGACACTGCCCTCGCCCGAGGC	0.708													8	4	---	---	---	---					
TMEM132D	121256	broad.mit.edu	37	12	129559393	129559394	+	Frame_Shift_Ins	INS	-	A	A			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr12:129559393_129559394insA	uc009zyl.1	-	9	2654_2655	c.2326_2327insT	c.(2326-2328)TCCfs	p.S776fs	TMEM132D_uc001uia.2_Frame_Shift_Ins_p.S314fs	NM_133448	NP_597705	Q14C87	T132D_HUMAN	transmembrane protein 132D precursor	776	Extracellular (Potential).					integral to membrane				ovary(10)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	14	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0934)|Breast(359;0.133)		OV - Ovarian serous cystadenocarcinoma(86;0.000288)|Epithelial(86;0.0116)|all cancers(50;0.0246)		TTTCTGGCAGGATTCACTAATA	0.475													55	33	---	---	---	---					
ACADVL	37	broad.mit.edu	37	17	7126487	7126488	+	Frame_Shift_Ins	INS	-	A	A	rs145701525		TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr17:7126487_7126488insA	uc002gev.2	+	11	1264_1265	c.1113_1114insA	c.(1111-1116)GAGAAAfs	p.E371fs	ACADVL_uc010vtp.1_Frame_Shift_Ins_p.E381fs|ACADVL_uc010vtq.1_3'UTR|ACADVL_uc002gew.2_Frame_Shift_Ins_p.E349fs|ACADVL_uc002gex.2_Frame_Shift_Ins_p.E295fs	NM_000018	NP_000009	P49748	ACADV_HUMAN	acyl-Coenzyme A dehydrogenase, very long chain	371_372	Catalytic.				energy derivation by oxidation of organic compounds|fatty acid beta-oxidation using acyl-CoA dehydrogenase|negative regulation of fatty acid biosynthetic process|negative regulation of fatty acid oxidation|regulation of cholesterol metabolic process|temperature homeostasis	mitochondrial inner membrane|mitochondrial nucleoid	long-chain-acyl-CoA dehydrogenase activity			ovary(3)	3						AGTTTGGGGAGAAAATTCACAA	0.554													74	78	---	---	---	---					
ZNF790	388536	broad.mit.edu	37	19	37309781	37309782	+	Frame_Shift_Ins	INS	-	A	A	rs79499850	byFrequency	TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:37309781_37309782insA	uc002oew.2	-	5	1583_1584	c.1464_1465insT	c.(1462-1467)TTTCGTfs	p.F488fs	uc002oev.1_Intron	NM_206894	NP_996777	Q6PG37	ZN790_HUMAN	zinc finger protein 790	488_489	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|skin(1)	2	Esophageal squamous(110;0.183)		COAD - Colon adenocarcinoma(19;0.0454)|Colorectal(19;0.065)			TCTGAACCACGAAAAAAGGTCT	0.391													17	56	---	---	---	---					
NUMBL	9253	broad.mit.edu	37	19	41173866	41173868	+	In_Frame_Del	DEL	TGC	-	-			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:41173866_41173868delTGC	uc002oon.2	-	10	1503_1505	c.1335_1337delGCA	c.(1333-1338)CAGCAA>CAA	p.445_446QQ>Q	NUMBL_uc010xvq.1_In_Frame_Del_p.404_405QQ>Q|NUMBL_uc002ooo.2_In_Frame_Del_p.444_445QQ>Q|NUMBL_uc010xvr.1_In_Frame_Del_p.404_405QQ>Q	NM_004756	NP_004747	Q9Y6R0	NUMBL_HUMAN	numb homolog (Drosophila)-like	445_446	Poly-Gln.				cytokine-mediated signaling pathway|lateral ventricle development|neuroblast division in subventricular zone|protein metabolic process	cytoplasm	protein binding			lung(3)|ovary(1)|breast(1)	5			Lung(22;0.000393)|LUSC - Lung squamous cell carcinoma(20;0.00105)			TGAGgctgcttgctgctgttgct	0.473													3	5	---	---	---	---					
IRF3	3661	broad.mit.edu	37	19	50165513	50165513	+	Frame_Shift_Del	DEL	C	-	-			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr19:50165513delC	uc010end.1	-	6	1056	c.674delG	c.(673-675)GGCfs	p.G225fs	IRF3_uc002pos.1_5'Flank|IRF3_uc002pot.1_Intron|IRF3_uc002pox.1_Frame_Shift_Del_p.G225fs|IRF3_uc002poy.1_Frame_Shift_Del_p.G225fs|IRF3_uc002pou.2_Frame_Shift_Del_p.G225fs|IRF3_uc002pov.2_Frame_Shift_Del_p.G79fs|IRF3_uc002pow.2_Frame_Shift_Del_p.G225fs|IRF3_uc002poz.1_Frame_Shift_Del_p.G225fs|BCL2L12_uc002ppa.2_5'Flank|BCL2L12_uc002ppb.2_5'Flank	NM_001571	NP_001562	Q14653	IRF3_HUMAN	interferon regulatory factor 3	225	Involved in HERC5 binding.				interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|MyD88-independent toll-like receptor signaling pathway|negative regulation of type I interferon production|response to virus|Toll signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|transcription from RNA polymerase II promoter|type I interferon-mediated signaling pathway	cytosol|endosome membrane|nucleoplasm|plasma membrane	DNA binding|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|transcription cofactor activity			ovary(2)	2		all_lung(116;3.24e-07)|Lung NSC(112;1.6e-06)|all_neural(266;0.0459)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.0011)|GBM - Glioblastoma multiforme(134;0.02)		CAGCCGCAGGCCCTCCGGGCA	0.652													22	61	---	---	---	---					
TANC1	85461	broad.mit.edu	37	2	160035379	160035381	+	In_Frame_Del	DEL	CTT	-	-			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr2:160035379_160035381delCTT	uc002uag.2	+	14	2489_2491	c.2215_2217delCTT	c.(2215-2217)CTTdel	p.L739del	TANC1_uc010fol.1_In_Frame_Del_p.L633del|TANC1_uc010zcm.1_In_Frame_Del_p.L731del|TANC1_uc010fom.1_In_Frame_Del_p.L545del|TANC1_uc002uai.1_RNA	NM_033394	NP_203752	Q9C0D5	TANC1_HUMAN	tetratricopeptide repeat, ankyrin repeat and	739						cell junction|postsynaptic density|postsynaptic membrane	binding			ovary(2)|central_nervous_system(1)	3						GCTCTATTTGCTTCAGTGCAACA	0.552													65	145	---	---	---	---					
PPP1R3D	5509	broad.mit.edu	37	20	58514976	58514976	+	Frame_Shift_Del	DEL	C	-	-			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr20:58514976delC	uc002ybb.2	-	1	377	c.11delG	c.(10-12)GGCfs	p.G4fs	C20orf177_uc002yba.2_Intron|C20orf177_uc010zzx.1_5'Flank|C20orf177_uc002ybc.2_5'Flank	NM_006242	NP_006233	O95685	PPR3D_HUMAN	protein phosphatase 1, regulatory subunit 3D	4					glycogen metabolic process		protein binding|protein serine/threonine phosphatase activity				0	all_lung(29;0.00391)		BRCA - Breast invasive adenocarcinoma(7;5.12e-09)			GGAGCTCGGGCCTCTGGACAT	0.721													2	4	---	---	---	---					
POU1F1	5449	broad.mit.edu	37	3	87313522	87313522	+	Frame_Shift_Del	DEL	C	-	-			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr3:87313522delC	uc003dqq.1	-	3	480	c.355delG	c.(355-357)GAAfs	p.E119fs	POU1F1_uc010hoj.1_Frame_Shift_Del_p.E145fs	NM_000306	NP_000297	P28069	PIT1_HUMAN	pituitary specific transcription factor 1	119					negative regulation of cell proliferation|positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)|skin(1)	2	all_cancers(8;0.104)|Lung SC(3;0.184)	Lung NSC(201;0.0777)		LUSC - Lung squamous cell carcinoma(29;0.00229)|Lung(72;0.00677)		ATTGGCTCTTCCACCAATTTA	0.418													43	97	---	---	---	---					
IARS	3376	broad.mit.edu	37	9	95050130	95050130	+	Frame_Shift_Del	DEL	A	-	-			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chr9:95050130delA	uc004art.1	-	4	596	c.339delT	c.(337-339)ATTfs	p.I113fs	IARS_uc004ars.1_5'UTR|IARS_uc004aru.3_Frame_Shift_Del_p.I113fs|IARS_uc010mqr.2_Frame_Shift_Del_p.I3fs|IARS_uc010mqt.2_Intron	NM_013417	NP_038203	P41252	SYIC_HUMAN	isoleucine tRNA synthetase	113					isoleucyl-tRNA aminoacylation	cytosol|nucleus|soluble fraction	ATP binding|isoleucine-tRNA ligase activity|protein binding			ovary(1)|skin(1)	2					L-Isoleucine(DB00167)	TATACTCTGTAATCCCCATTT	0.403													15	34	---	---	---	---					
ARSF	416	broad.mit.edu	37	X	3002534	3002535	+	Frame_Shift_Ins	INS	-	TTTT	TTTT			TCGA-GN-A266-06A-11D-A197-08	TCGA-GN-A266-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	04aa6b77-8074-480c-872e-a1a47afa5314	9ff91018-9d55-43be-9ae3-945caecb0cbb	g.chrX:3002534_3002535insTTTT	uc004cre.1	+	6	878_879	c.657_658insTTTT	c.(655-660)ATCTTCfs	p.I219fs	ARSF_uc004crf.1_Frame_Shift_Ins_p.I219fs	NM_004042	NP_004033	P54793	ARSF_HUMAN	arylsulfatase F precursor	219_220						extracellular region	arylsulfatase activity|metal ion binding			ovary(2)	2		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				GGCTCCTGATCTTCTCCATGAT	0.545													23	34	---	---	---	---					
