Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
CSF3R	1441	broad.mit.edu	37	1	36937076	36937076	+	Missense_Mutation	SNP	C	T	T			TCGA-BJ-A0ZB-01A-11D-A10S-08	TCGA-BJ-A0ZB-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	add0b0f6-b4a8-4b73-b634-c3600dc567d5	d078cbf9-7e5f-47cb-9f33-725a33f31c1b	g.chr1:36937076C>T	uc001caw.1	-	10	1421	c.1243G>A	c.(1243-1245)GGG>AGG	p.G415R	CSF3R_uc001cat.1_5'Flank|CSF3R_uc009vvc.1_5'UTR|CSF3R_uc001cau.1_5'UTR|CSF3R_uc001cav.1_Missense_Mutation_p.G415R|CSF3R_uc001cax.1_Missense_Mutation_p.G415R|CSF3R_uc001cay.1_Missense_Mutation_p.G415R	NM_000760	NP_000751	Q99062	CSF3R_HUMAN	colony stimulating factor 3 receptor isoform a	415	Extracellular (Potential).|Fibronectin type-III 3.				cell adhesion|defense response	extracellular region|integral to plasma membrane	cytokine receptor activity			central_nervous_system(2)|ovary(1)	3		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)			Filgrastim(DB00099)|Pegfilgrastim(DB00019)	CGAGAGGTCCCGGCTGAGTTA	0.498000													139	180	---	---	---	---	0	0	0.048971	0	0
KIF2C	11004	broad.mit.edu	37	1	45218850	45218850	+	Missense_Mutation	SNP	G	C	C			TCGA-BJ-A0ZB-01A-11D-A10S-08	TCGA-BJ-A0ZB-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	add0b0f6-b4a8-4b73-b634-c3600dc567d5	d078cbf9-7e5f-47cb-9f33-725a33f31c1b	g.chr1:45218850G>C	uc001cmg.3	+	6	601	c.486G>C	c.(484-486)TTG>TTC	p.L162F	KIF2C_uc010olb.1_Intron|KIF2C_uc010olc.1_Missense_Mutation_p.L49F|KIF2C_uc001cmh.3_Missense_Mutation_p.L108F	NM_006845	NP_006836	Q99661	KIF2C_HUMAN	kinesin family member 2C	162	Globular (Potential).				blood coagulation|cell division|cell proliferation|chromosome segregation|establishment or maintenance of microtubule cytoskeleton polarity|microtubule depolymerization|microtubule-based movement|mitotic prometaphase|regulation of chromosome segregation	condensed chromosome kinetochore|cytosol|kinesin complex|microtubule|nucleus	ATP binding|centromeric DNA binding|microtubule motor activity|microtubule plus-end binding			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)					AAATACCATTGAGGATGGTCA	0.547000													3	135	---	---	---	---	0	0	0.009096	0	0
KIF2C	11004	broad.mit.edu	37	1	45218863	45218863	+	Missense_Mutation	SNP	G	A	A			TCGA-BJ-A0ZB-01A-11D-A10S-08	TCGA-BJ-A0ZB-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	add0b0f6-b4a8-4b73-b634-c3600dc567d5	d078cbf9-7e5f-47cb-9f33-725a33f31c1b	g.chr1:45218863G>A	uc001cmg.3	+	6	614	c.499G>A	c.(499-501)GAG>AAG	p.E167K	KIF2C_uc010olb.1_Intron|KIF2C_uc010olc.1_Missense_Mutation_p.E54K|KIF2C_uc001cmh.3_Missense_Mutation_p.E113K	NM_006845	NP_006836	Q99661	KIF2C_HUMAN	kinesin family member 2C	167	Globular (Potential).				blood coagulation|cell division|cell proliferation|chromosome segregation|establishment or maintenance of microtubule cytoskeleton polarity|microtubule depolymerization|microtubule-based movement|mitotic prometaphase|regulation of chromosome segregation	condensed chromosome kinetochore|cytosol|kinesin complex|microtubule|nucleus	ATP binding|centromeric DNA binding|microtubule motor activity|microtubule plus-end binding			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)					GATGGTCAGCGAGGAGATGGA	0.532000													4	130	---	---	---	---	0	0	0.014758	0	0
ARHGAP29	9411	broad.mit.edu	37	1	94639989	94639989	+	Silent	SNP	C	T	T			TCGA-BJ-A0ZB-01A-11D-A10S-08	TCGA-BJ-A0ZB-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	add0b0f6-b4a8-4b73-b634-c3600dc567d5	d078cbf9-7e5f-47cb-9f33-725a33f31c1b	g.chr1:94639989C>T	uc001dqj.3	-	23	3591	c.3222G>A	c.(3220-3222)CAG>CAA	p.Q1074Q	ARHGAP29_uc009wdq.1_Intron	NM_004815	NP_004806	Q52LW3	RHG29_HUMAN	PTPL1-associated RhoGAP 1	1074					Rho protein signal transduction	cytosol	metal ion binding|Rho GTPase activator activity			breast(4)|skin(3)|lung(2)|upper_aerodigestive_tract(1)|ovary(1)	11		all_lung(203;0.000732)|Lung NSC(277;0.00328)		all cancers(265;0.0187)|Epithelial(280;0.159)		GTAGAGTTTGCTGGTCAAAGC	0.388000													5	226	---	---	---	---	0	0	0.014758	0	0
ADAMTSL4	54507	broad.mit.edu	37	1	150531845	150531845	+	Missense_Mutation	SNP	C	A	A			TCGA-BJ-A0ZB-01A-11D-A10S-08	TCGA-BJ-A0ZB-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	add0b0f6-b4a8-4b73-b634-c3600dc567d5	d078cbf9-7e5f-47cb-9f33-725a33f31c1b	g.chr1:150531845C>A	uc001eux.2	+	17	3082	c.2846C>A	c.(2845-2847)TCT>TAT	p.S949Y	ADAMTSL4_uc009wlw.2_Missense_Mutation_p.S972Y|ADAMTSL4_uc010pcg.1_Missense_Mutation_p.S910Y|ADAMTSL4_uc009wlx.2_Missense_Mutation_p.S112Y	NM_019032	NP_061905	Q6UY14	ATL4_HUMAN	thrombospondin repeat containing 1 isoform 1	949	TSP type-1 5.				apoptosis|positive regulation of apoptosis		metalloendopeptidase activity|protease binding			ovary(1)|skin(1)	2	all_cancers(9;3.13e-53)|all_epithelial(9;3.74e-43)|all_lung(15;2.43e-34)|Lung NSC(24;8.86e-31)|Breast(34;0.000326)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0395)|Hepatocellular(266;0.108)|Melanoma(130;0.128)|Colorectal(459;0.171)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0241)|Epithelial(6;3.18e-23)|all cancers(9;1.79e-22)|OV - Ovarian serous cystadenocarcinoma(6;1.13e-14)|BRCA - Breast invasive adenocarcinoma(12;0.000503)|LUSC - Lung squamous cell carcinoma(543;0.171)|STAD - Stomach adenocarcinoma(528;0.206)			AACGTGACTTCTCCGAGCAAC	0.612000											OREG0013787	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	75	95	---	---	---	---	5.44642e-36	5.89407e-36	0.048971	1	0
NES	10763	broad.mit.edu	37	1	156641203	156641203	+	Missense_Mutation	SNP	C	T	T			TCGA-BJ-A0ZB-01A-11D-A10S-08	TCGA-BJ-A0ZB-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	add0b0f6-b4a8-4b73-b634-c3600dc567d5	d078cbf9-7e5f-47cb-9f33-725a33f31c1b	g.chr1:156641203C>T	uc001fpq.2	-	4	2910	c.2777G>A	c.(2776-2778)GGA>GAA	p.G926E		NM_006617	NP_006608	P48681	NEST_HUMAN	nestin	926	Tail.				brain development|embryonic camera-type eye development|G2/M transition of mitotic cell cycle|negative regulation of apoptosis|positive regulation of intermediate filament depolymerization|positive regulation of neural precursor cell proliferation|stem cell proliferation	cytoplasm|intermediate filament	intermediate filament binding|structural molecule activity			ovary(6)	6	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					TTGGTACTCTCCCTTTCCCAG	0.527000													6	246	---	---	---	---	0	0	0.021553	0	0
CACNA1E	777	broad.mit.edu	37	1	181731728	181731728	+	Missense_Mutation	SNP	T	C	C			TCGA-BJ-A0ZB-01A-11D-A10S-08	TCGA-BJ-A0ZB-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	add0b0f6-b4a8-4b73-b634-c3600dc567d5	d078cbf9-7e5f-47cb-9f33-725a33f31c1b	g.chr1:181731728T>C	uc001gow.2	+	33	4789	c.4624T>C	c.(4624-4626)TGG>CGG	p.W1542R	CACNA1E_uc009wxs.2_Missense_Mutation_p.W1430R|CACNA1E_uc001gox.1_Missense_Mutation_p.W768R|CACNA1E_uc009wxt.2_Missense_Mutation_p.W768R	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	1542	Helical; Name=S3 of repeat IV.|IV.				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						CCGAGACACCTGGAATATCTT	0.363000													11	45	---	---	---	---	0	0	0.010729	0	0
ELF3	1999	broad.mit.edu	37	1	201981484	201981484	+	Missense_Mutation	SNP	C	T	T			TCGA-BJ-A0ZB-01A-11D-A10S-08	TCGA-BJ-A0ZB-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	add0b0f6-b4a8-4b73-b634-c3600dc567d5	d078cbf9-7e5f-47cb-9f33-725a33f31c1b	g.chr1:201981484C>T	uc001gxg.3	+	3	3590	c.398C>T	c.(397-399)TCT>TTT	p.S133F	ELF3_uc001gxi.3_Missense_Mutation_p.S133F|ELF3_uc001gxh.3_Missense_Mutation_p.S133F	NM_004433	NP_004424	P78545	ELF3_HUMAN	E74-like factor 3 (ets domain transcription	133					epidermis development|epithelial cell differentiation|inflammatory response|mammary gland involution|negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	Golgi apparatus|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity				0						TCCAGCTCTTCTGATGAGCTC	0.582000													4	112	---	---	---	---	0	0	0.009096	0	0
HHIPL2	79802	broad.mit.edu	37	1	222717148	222717148	+	Silent	SNP	G	A	A			TCGA-BJ-A0ZB-01A-11D-A10S-08	TCGA-BJ-A0ZB-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	add0b0f6-b4a8-4b73-b634-c3600dc567d5	d078cbf9-7e5f-47cb-9f33-725a33f31c1b	g.chr1:222717148G>A	uc001hnh.1	-	2	763	c.705C>T	c.(703-705)GCC>GCT	p.A235A		NM_024746	NP_079022	Q6UWX4	HIPL2_HUMAN	HHIP-like 2 precursor	235					carbohydrate metabolic process	extracellular region	oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor|quinone binding			ovary(1)	1				GBM - Glioblastoma multiforme(131;0.0185)		CTACCTGCTCGGCAACAAAGA	0.622000													10	86	---	---	---	---	0	0	0.008291	0	0
CHAT	1103	broad.mit.edu	37	10	50824648	50824648	+	Silent	SNP	T	G	G	rs143723043		TCGA-BJ-A0ZB-01A-11D-A10S-08	TCGA-BJ-A0ZB-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	add0b0f6-b4a8-4b73-b634-c3600dc567d5	d078cbf9-7e5f-47cb-9f33-725a33f31c1b	g.chr10:50824648T>G	uc001jhz.2	+	2	540	c.387T>G	c.(385-387)TCT>TCG	p.S129S	CHAT_uc001jhv.1_Silent_p.S11S|CHAT_uc001jhx.1_Silent_p.S11S|CHAT_uc001jhy.1_Silent_p.S11S|CHAT_uc001jia.2_Silent_p.S11S|CHAT_uc010qgs.1_Silent_p.S11S	NM_020549	NP_065574	P28329	CLAT_HUMAN	choline acetyltransferase isoform 2	129					neurotransmitter biosynthetic process|neurotransmitter secretion	cytosol|nucleus	choline O-acetyltransferase activity			central_nervous_system(3)	3		all_neural(218;0.107)		GBM - Glioblastoma multiforme(2;0.000585)	Choline(DB00122)	GTGAGGAGTCTGTGAGTGACT	0.567000													17	14	---	---	---	---	0	0	0.033300	0	0
MUC5B	727897	broad.mit.edu	37	11	1264048	1264048	+	Missense_Mutation	SNP	G	A	A			TCGA-BJ-A0ZB-01A-11D-A10S-08	TCGA-BJ-A0ZB-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	add0b0f6-b4a8-4b73-b634-c3600dc567d5	d078cbf9-7e5f-47cb-9f33-725a33f31c1b	g.chr11:1264048G>A	uc009ycr.1	+	47	8143	c.8017G>A	c.(8017-8019)GTT>ATT	p.V2673I	MUC5B_uc001ltb.2_Missense_Mutation_p.V1983I	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	1980	7 X Cys-rich subdomain repeats.|11 X approximate tandem repeats, Ser/Thr- rich.|Thr-rich.			VTP -> FTA (in Ref. 4; CAA96577).	cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		AGCTACCAGCGTTACACCCAT	0.632000													79	117	---	---	---	---	0	0	0.048971	0	0
OR51V1	283111	broad.mit.edu	37	11	5221748	5221748	+	Missense_Mutation	SNP	C	G	G			TCGA-BJ-A0ZB-01A-11D-A10S-08	TCGA-BJ-A0ZB-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	add0b0f6-b4a8-4b73-b634-c3600dc567d5	d078cbf9-7e5f-47cb-9f33-725a33f31c1b	g.chr11:5221748C>G	uc010qyz.1	-	1	183	c.183G>C	c.(181-183)GAG>GAC	p.E61D		NM_001004760	NP_001004760	Q9H2C8	O51V1_HUMAN	olfactory receptor, family 51, subfamily V,	61	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.83e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GCAGGCTTGGCTCAGTCCATA	0.537000													13	72	---	---	---	---	0	0	0.028581	0	0
EIF4G2	1982	broad.mit.edu	37	11	10822345	10822345	+	Missense_Mutation	SNP	A	G	G			TCGA-BJ-A0ZB-01A-11D-A10S-08	TCGA-BJ-A0ZB-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	add0b0f6-b4a8-4b73-b634-c3600dc567d5	d078cbf9-7e5f-47cb-9f33-725a33f31c1b	g.chr11:10822345A>G	uc001mjc.2	-	16	1994	c.1577T>C	c.(1576-1578)ATC>ACC	p.I526T	EIF4G2_uc001mjb.2_Missense_Mutation_p.I320T|EIF4G2_uc009ygf.2_Missense_Mutation_p.I320T|EIF4G2_uc001mjd.2_Missense_Mutation_p.I488T	NM_001418	NP_001409	P78344	IF4G2_HUMAN	eukaryotic translation initiation factor 4	526					cell cycle arrest|cell death|regulation of translational initiation|RNA metabolic process	eukaryotic translation initiation factor 4F complex	protein binding|translation initiation factor activity			ovary(1)|central_nervous_system(1)	2				all cancers(16;2.8e-07)|Epithelial(150;4.18e-07)|BRCA - Breast invasive adenocarcinoma(625;0.111)		CTTTTCCTGGATAAGCGGTGG	0.383000													48	75	---	---	---	---	0	0	0.048971	0	0
OR8H2	390151	broad.mit.edu	37	11	55872995	55872995	+	Silent	SNP	C	T	T			TCGA-BJ-A0ZB-01A-11D-A10S-08	TCGA-BJ-A0ZB-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	add0b0f6-b4a8-4b73-b634-c3600dc567d5	d078cbf9-7e5f-47cb-9f33-725a33f31c1b	g.chr11:55872995C>T	uc010riy.1	+	1	477	c.477C>T	c.(475-477)AAC>AAT	p.N159N		NM_001005200	NP_001005200	Q8N162	OR8H2_HUMAN	olfactory receptor, family 8, subfamily H,	159	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	Esophageal squamous(21;0.00693)					CCTTTGTCAACGTGGTTTCCA	0.433000										HNSCC(53;0.14)			102	189	---	---	---	---	0	0	0.048971	0	0
PATL1	219988	broad.mit.edu	37	11	59421541	59421541	+	Missense_Mutation	SNP	G	C	C			TCGA-BJ-A0ZB-01A-11D-A10S-08	TCGA-BJ-A0ZB-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	add0b0f6-b4a8-4b73-b634-c3600dc567d5	d078cbf9-7e5f-47cb-9f33-725a33f31c1b	g.chr11:59421541G>C	uc001noe.3	-	9	1179	c.1036C>G	c.(1036-1038)CAG>GAG	p.Q346E	PATL1_uc009yms.1_Missense_Mutation_p.Q316E|PATL1_uc010rkw.1_Missense_Mutation_p.Q51E	NM_152716	NP_689929	Q86TB9	PATL1_HUMAN	protein associated with topoisomerase II homolog	346	Region N; interaction with decapping machinery.				cytoplasmic mRNA processing body assembly|deadenylation-dependent decapping of nuclear-transcribed mRNA	cytoplasmic mRNA processing body	protein binding|RNA binding			ovary(1)	1						ATTGGGGCCTGAGATCTAAGA	0.428000													3	116	---	---	---	---	0	0	0.004672	0	0
TMEM109	79073	broad.mit.edu	37	11	60689584	60689584	+	Missense_Mutation	SNP	C	T	T			TCGA-BJ-A0ZB-01A-11D-A10S-08	TCGA-BJ-A0ZB-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	add0b0f6-b4a8-4b73-b634-c3600dc567d5	d078cbf9-7e5f-47cb-9f33-725a33f31c1b	g.chr11:60689584C>T	uc001nqg.2	+	4	1057	c.679C>T	c.(679-681)CGC>TGC	p.R227C	TMEM109_uc001nqh.2_Missense_Mutation_p.R227C|TMEM132A_uc001nqi.2_5'Flank|TMEM132A_uc001nqj.2_5'Flank	NM_024092	NP_076997	Q9BVC6	TM109_HUMAN	transmembrane protein 109 precursor	227						integral to membrane|nuclear outer membrane|sarcoplasmic reticulum membrane					0						GGAGGAGCTGCGCTGGCGCCA	0.687000													5	39	---	---	---	---	0	0	0.014758	0	0
ASRGL1	80150	broad.mit.edu	37	11	62123836	62123836	+	Missense_Mutation	SNP	T	C	C			TCGA-BJ-A0ZB-01A-11D-A10S-08	TCGA-BJ-A0ZB-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	add0b0f6-b4a8-4b73-b634-c3600dc567d5	d078cbf9-7e5f-47cb-9f33-725a33f31c1b	g.chr11:62123836T>C	uc001nte.3	+	3	514	c.230T>C	c.(229-231)ATG>ACG	p.M77T	ASRGL1_uc001ntf.3_Missense_Mutation_p.M77T|ASRGL1_uc001ntg.3_Intron|ASRGL1_uc001nth.1_5'Flank	NM_025080	NP_079356	Q7L266	ASGL1_HUMAN	asparaginase-like 1	77					asparagine catabolic process via L-aspartate|protein maturation	cytoplasm|microtubule cytoskeleton|nucleus	N4-(beta-N-acetylglucosaminyl)-L-asparaginase activity				0					L-Asparagine(DB00174)|L-Aspartic Acid(DB00128)	GAGGTTGAAATGGATGCTAGT	0.373000													64	95	---	---	---	---	0	0	0.048971	0	0
A2M	2	broad.mit.edu	37	12	9264798	9264798	+	Missense_Mutation	SNP	C	T	T			TCGA-BJ-A0ZB-01A-11D-A10S-08	TCGA-BJ-A0ZB-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	add0b0f6-b4a8-4b73-b634-c3600dc567d5	d078cbf9-7e5f-47cb-9f33-725a33f31c1b	g.chr12:9264798C>T	uc001qvk.1	-	4	553	c.440G>A	c.(439-441)CGT>CAT	p.R147H	A2M_uc009zgk.1_Translation_Start_Site	NM_000014	NP_000005	P01023	A2MG_HUMAN	alpha-2-macroglobulin precursor	147					blood coagulation, intrinsic pathway|negative regulation of complement activation, lectin pathway|platelet activation|platelet degranulation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|extracellular space|platelet alpha granule lumen	enzyme binding|GTPase activator activity|interleukin-1 binding|interleukin-8 binding|serine-type endopeptidase inhibitor activity|tumor necrosis factor binding			central_nervous_system(4)|skin(1)	5					Bacitracin(DB00626)|Becaplermin(DB00102)	GGAGACAACACGAAATTTCAC	0.393000													13	35	---	---	---	---	0	0	0.024245	0	0
PPHLN1	51535	broad.mit.edu	37	12	42836501	42836501	+	Silent	SNP	C	T	T			TCGA-BJ-A0ZB-01A-11D-A10S-08	TCGA-BJ-A0ZB-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	add0b0f6-b4a8-4b73-b634-c3600dc567d5	d078cbf9-7e5f-47cb-9f33-725a33f31c1b	g.chr12:42836501C>T	uc001rng.1	+	11	1188	c.1083C>T	c.(1081-1083)CAC>CAT	p.H361H	PPHLN1_uc010skr.1_Silent_p.H306H|PPHLN1_uc010sks.1_Silent_p.H287H|PPHLN1_uc010skt.1_Silent_p.H241H|PPHLN1_uc001rni.1_Silent_p.H306H|PPHLN1_uc001rnh.1_RNA|PPHLN1_uc010sku.1_Intron	NM_016488	NP_057572	Q8NEY8	PPHLN_HUMAN	periphilin 1 isoform 1	361					keratinization	cytoplasm|nucleus				ovary(1)|breast(1)	2	all_cancers(12;0.00049)|Breast(8;0.165)	Lung NSC(34;0.123)		GBM - Glioblastoma multiforme(48;0.0875)		aaatggatcacgacggaaccc	0.010000													22	279	---	---	---	---	0	0	0.018920	0	0
ESPL1	9700	broad.mit.edu	37	12	53680377	53680377	+	Missense_Mutation	SNP	A	T	T			TCGA-BJ-A0ZB-01A-11D-A10S-08	TCGA-BJ-A0ZB-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	add0b0f6-b4a8-4b73-b634-c3600dc567d5	d078cbf9-7e5f-47cb-9f33-725a33f31c1b	g.chr12:53680377A>T	uc001sck.2	+	18	3948	c.3857A>T	c.(3856-3858)CAA>CTA	p.Q1286L	ESPL1_uc001scj.2_Missense_Mutation_p.Q961L|ESPL1_uc010soe.1_Intron	NM_012291	NP_036423	Q14674	ESPL1_HUMAN	separase	1286					apoptosis|cytokinesis|establishment of mitotic spindle localization|mitotic sister chromatid segregation|negative regulation of sister chromatid cohesion|positive regulation of mitotic metaphase/anaphase transition|proteolysis	centrosome|nucleus	cysteine-type peptidase activity|protein binding			lung(1)|kidney(1)|skin(1)	3						TGTACTACCCAACTTTTTGCA	0.552000													7	124	---	---	---	---	0	0	0.029380	0	0
CCT2	10576	broad.mit.edu	37	12	69985902	69985902	+	Missense_Mutation	SNP	T	G	G			TCGA-BJ-A0ZB-01A-11D-A10S-08	TCGA-BJ-A0ZB-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	add0b0f6-b4a8-4b73-b634-c3600dc567d5	d078cbf9-7e5f-47cb-9f33-725a33f31c1b	g.chr12:69985902T>G	uc001svb.1	+	8	807	c.713T>G	c.(712-714)CTT>CGT	p.L238R	CCT2_uc009zrm.1_RNA|CCT2_uc009zrn.1_Missense_Mutation_p.L238R|CCT2_uc010stl.1_Missense_Mutation_p.L191R	NM_006431	NP_006422	P78371	TCPB_HUMAN	chaperonin containing TCP1, subunit 2	238					'de novo' posttranslational protein folding	nucleus	ATP binding|unfolded protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3	all_cancers(2;7.7e-106)|Breast(13;2.15e-06)|Esophageal squamous(21;0.187)		Epithelial(6;2.72e-18)|GBM - Glioblastoma multiforme(2;2.58e-10)|Lung(24;0.000185)|OV - Ovarian serous cystadenocarcinoma(12;0.00126)|STAD - Stomach adenocarcinoma(21;0.00501)|Kidney(9;0.143)|LUSC - Lung squamous cell carcinoma(43;0.24)			GCTAAAATTCTTATTGCAAAT	0.224000													38	56	---	---	---	---	0	0	0.036044	0	0
CIT	11113	broad.mit.edu	37	12	120241044	120241044	+	Missense_Mutation	SNP	A	G	G			TCGA-BJ-A0ZB-01A-11D-A10S-08	TCGA-BJ-A0ZB-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	add0b0f6-b4a8-4b73-b634-c3600dc567d5	d078cbf9-7e5f-47cb-9f33-725a33f31c1b	g.chr12:120241044A>G	uc001txi.1	-	10	1314	c.1261T>C	c.(1261-1263)TAC>CAC	p.Y421H	CIT_uc001txh.1_5'UTR|CIT_uc001txj.1_Missense_Mutation_p.Y421H	NM_007174	NP_009105	O14578	CTRO_HUMAN	citron	421	AGC-kinase C-terminal.				intracellular signal transduction		ATP binding|metal ion binding|protein serine/threonine kinase activity|SH3 domain binding|small GTPase regulator activity			ovary(6)|urinary_tract(1)|lung(1)|breast(1)|skin(1)	10	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)	Myeloproliferative disorder(1001;0.0255)		BRCA - Breast invasive adenocarcinoma(302;0.211)		GCCTTGCTGTACGAAAACCCC	0.488000													3	101	---	---	---	---	0	0	0.009096	0	0
OR4N3P	390539	broad.mit.edu	37	15	22414354	22414354	+	Missense_Mutation	SNP	T	C	C			TCGA-BJ-A0ZB-01A-11D-A10S-08	TCGA-BJ-A0ZB-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	add0b0f6-b4a8-4b73-b634-c3600dc567d5	d078cbf9-7e5f-47cb-9f33-725a33f31c1b	g.chr15:22414354T>C	uc001yuf.2	+	1	653	c.653T>C	c.(652-654)ATG>ACG	p.M218T		NM_001080841	NP_001074310			RecName: Full=Olfactory receptor 4N2; AltName: Full=Olfactory receptor OR14-8; AltName: Full=Olfactory receptor OR14-13;												0						AAAGCTTCCATGAAAAAGGTG	0.343000													6	43	---	---	---	---	0	0	0.021553	0	0
LCTL	197021	broad.mit.edu	37	15	66842425	66842425	+	Silent	SNP	G	C	C			TCGA-BJ-A0ZB-01A-11D-A10S-08	TCGA-BJ-A0ZB-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	add0b0f6-b4a8-4b73-b634-c3600dc567d5	d078cbf9-7e5f-47cb-9f33-725a33f31c1b	g.chr15:66842425G>C	uc002aqc.2	-	12	1674	c.1542C>G	c.(1540-1542)CTC>CTG	p.L514L	LCTL_uc002aqd.3_Silent_p.L341L|LCTL_uc010bhw.2_Intron	NM_207338	NP_997221	Q6UWM7	LCTL_HUMAN	lactase-like precursor	514	Extracellular (Potential).				carbohydrate metabolic process	endoplasmic reticulum membrane|integral to membrane	cation binding|hydrolase activity, hydrolyzing O-glycosyl compounds			ovary(2)	2						CCAAAGCTTTGAGGTACCAAC	0.308000													3	61	---	---	---	---	0	0	0.009096	0	0
BNC1	646	broad.mit.edu	37	15	83932102	83932102	+	Missense_Mutation	SNP	C	T	T			TCGA-BJ-A0ZB-01A-11D-A10S-08	TCGA-BJ-A0ZB-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	add0b0f6-b4a8-4b73-b634-c3600dc567d5	d078cbf9-7e5f-47cb-9f33-725a33f31c1b	g.chr15:83932102C>T	uc002bjt.1	-	4	1989	c.1901G>A	c.(1900-1902)AGG>AAG	p.R634K	BNC1_uc010uos.1_Missense_Mutation_p.R622K	NM_001717	NP_001708	Q01954	BNC1_HUMAN	basonuclin 1	634					epidermis development|positive regulation of cell proliferation	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3						CTCAGTCTCCCTCTCTGAATT	0.552000													5	175	---	---	---	---	0	0	0.014758	0	0
ADAMTSL3	57188	broad.mit.edu	37	15	84582013	84582013	+	Missense_Mutation	SNP	G	A	A			TCGA-BJ-A0ZB-01A-11D-A10S-08	TCGA-BJ-A0ZB-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	add0b0f6-b4a8-4b73-b634-c3600dc567d5	d078cbf9-7e5f-47cb-9f33-725a33f31c1b	g.chr15:84582013G>A	uc002bjz.3	+	16	2094	c.1870G>A	c.(1870-1872)GCA>ACA	p.A624T	ADAMTSL3_uc010bmt.1_Missense_Mutation_p.A624T|ADAMTSL3_uc010bmu.1_Missense_Mutation_p.A624T	NM_207517	NP_997400	P82987	ATL3_HUMAN	ADAMTS-like 3 precursor	624	TSP type-1 4.					proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(6)|central_nervous_system(5)|lung(5)|large_intestine(4)|breast(3)|skin(2)|kidney(1)|pancreas(1)	27			BRCA - Breast invasive adenocarcinoma(143;0.211)			CCTCCTGGAAGCATGTGATGA	0.617000													25	32	---	---	---	---	0	0	0.016522	0	0
ITGAL	3683	broad.mit.edu	37	16	30521697	30521697	+	Missense_Mutation	SNP	C	T	T			TCGA-BJ-A0ZB-01A-11D-A10S-08	TCGA-BJ-A0ZB-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	add0b0f6-b4a8-4b73-b634-c3600dc567d5	d078cbf9-7e5f-47cb-9f33-725a33f31c1b	g.chr16:30521697C>T	uc002dyi.3	+	22	2700	c.2524C>T	c.(2524-2526)CCT>TCT	p.P842S	ITGAL_uc002dyj.3_Missense_Mutation_p.P758S|ITGAL_uc010vev.1_Intron	NM_002209	NP_002200	P20701	ITAL_HUMAN	integrin alpha L isoform a precursor	842	Extracellular (Potential).				blood coagulation|heterophilic cell-cell adhesion|inflammatory response|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response|T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell	integrin complex	cell adhesion molecule binding|receptor activity			ovary(3)|lung(3)|central_nervous_system(3)|breast(1)	10					Efalizumab(DB00095)	TAGCCAGATACCTGTGAGCTG	0.557000													78	134	---	---	---	---	0	0	0.048971	0	0
ITGAD	3681	broad.mit.edu	37	16	31435803	31435803	+	Missense_Mutation	SNP	G	C	C			TCGA-BJ-A0ZB-01A-11D-A10S-08	TCGA-BJ-A0ZB-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	add0b0f6-b4a8-4b73-b634-c3600dc567d5	d078cbf9-7e5f-47cb-9f33-725a33f31c1b	g.chr16:31435803G>C	uc002ebv.1	+	29	3326	c.3277G>C	c.(3277-3279)GAA>CAA	p.E1093Q	ITGAD_uc010cap.1_Missense_Mutation_p.E1094Q	NM_005353	NP_005344	Q13349	ITAD_HUMAN	integrin, alpha D precursor	1093	Extracellular (Potential).				cell-cell adhesion|cell-matrix adhesion|immune response|integrin-mediated signaling pathway	integrin complex	receptor activity			skin(1)	1						GATGGTGCTAGAAGAAGACGA	0.542000													6	105	---	---	---	---	0	0	0.021553	0	0
ADAMTS18	170692	broad.mit.edu	37	16	77389861	77389861	+	Missense_Mutation	SNP	C	T	T			TCGA-BJ-A0ZB-01A-11D-A10S-08	TCGA-BJ-A0ZB-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	add0b0f6-b4a8-4b73-b634-c3600dc567d5	d078cbf9-7e5f-47cb-9f33-725a33f31c1b	g.chr16:77389861C>T	uc002ffc.3	-	9	1855	c.1436G>A	c.(1435-1437)CGC>CAC	p.R479H	ADAMTS18_uc010chc.1_Missense_Mutation_p.R67H|ADAMTS18_uc002ffe.1_Missense_Mutation_p.R175H|ADAMTS18_uc010vni.1_RNA	NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	479	Peptidase M12B.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						GAGATACTGGCGGCTGCAGGA	0.488000													46	58	---	---	---	---	0	0	0.042209	0	0
C17orf74	201243	broad.mit.edu	37	17	7330441	7330441	+	Silent	SNP	C	T	T			TCGA-BJ-A0ZB-01A-11D-A10S-08	TCGA-BJ-A0ZB-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	add0b0f6-b4a8-4b73-b634-c3600dc567d5	d078cbf9-7e5f-47cb-9f33-725a33f31c1b	g.chr17:7330441C>T	uc002ggw.2	+	3	1204	c.1131C>T	c.(1129-1131)GAC>GAT	p.D377D	FGF11_uc010vtw.1_Intron	NM_175734	NP_783861	Q0P670	CQ074_HUMAN	hypothetical protein LOC201243	377						integral to membrane					0		Prostate(122;0.157)				GCTCCCAGGACCCCCGTGAGG	0.682000													10	27	---	---	---	---	0	0	0.058154	0	0
MTMR4	9110	broad.mit.edu	37	17	56582201	56582201	+	Missense_Mutation	SNP	C	T	T			TCGA-BJ-A0ZB-01A-11D-A10S-08	TCGA-BJ-A0ZB-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	add0b0f6-b4a8-4b73-b634-c3600dc567d5	d078cbf9-7e5f-47cb-9f33-725a33f31c1b	g.chr17:56582201C>T	uc002iwj.2	-	12	1348	c.1238G>A	c.(1237-1239)CGC>CAC	p.R413H		NM_004687	NP_004678	Q9NYA4	MTMR4_HUMAN	myotubularin related protein 4	413	Myotubularin phosphatase.|Substrate binding (By similarity).					cytoplasm|membrane	metal ion binding|protein tyrosine phosphatase activity			skin(1)	1	Medulloblastoma(34;0.127)|all_neural(34;0.237)					CTGCGGTGTGCGGTCCCAGCC	0.532000													4	153	---	---	---	---	0	0	0.021553	0	0
TK1	7083	broad.mit.edu	37	17	76170913	76170913	+	Missense_Mutation	SNP	T	G	G			TCGA-BJ-A0ZB-01A-11D-A10S-08	TCGA-BJ-A0ZB-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	add0b0f6-b4a8-4b73-b634-c3600dc567d5	d078cbf9-7e5f-47cb-9f33-725a33f31c1b	g.chr17:76170913T>G	uc002juw.2	-	7	842	c.632A>C	c.(631-633)AAG>ACG	p.K211T	TK1_uc002jux.2_Missense_Mutation_p.K286T	NM_003258	NP_003249	P04183	KITH_HUMAN	thymidine kinase 1	211					DNA replication|protein homotetramerization|pyrimidine base metabolic process|pyrimidine nucleoside salvage	cytosol	ATP binding|thymidine kinase activity|zinc ion binding				0			BRCA - Breast invasive adenocarcinoma(99;0.00269)|OV - Ovarian serous cystadenocarcinoma(97;0.0804)|Lung(188;0.23)			TTCCCCTGGCTTTCCTGGCAC	0.632000													8	11	---	---	---	---	0	0	0.058154	0	0
DNASE2	1777	broad.mit.edu	37	19	12991901	12991901	+	Missense_Mutation	SNP	T	C	C			TCGA-BJ-A0ZB-01A-11D-A10S-08	TCGA-BJ-A0ZB-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	add0b0f6-b4a8-4b73-b634-c3600dc567d5	d078cbf9-7e5f-47cb-9f33-725a33f31c1b	g.chr19:12991901T>C	uc002mvn.1	-	2	298	c.152A>G	c.(151-153)TAC>TGC	p.Y51C	DNASE2_uc010xmr.1_Missense_Mutation_p.Y51C	NM_001375	NP_001366	O00115	DNS2A_HUMAN	deoxyribonuclease II, lysosomal precursor	51					apoptosis	lysosome	deoxyribonuclease II activity|DNA binding|protein binding				0						CAGATACTTGTACTGCAGCCC	0.647000								Direct_reversal_of_damage					29	55	---	---	---	---	0	0	0.054565	0	0
EPS15L1	58513	broad.mit.edu	37	19	16548625	16548625	+	Missense_Mutation	SNP	C	T	T			TCGA-BJ-A0ZB-01A-11D-A10S-08	TCGA-BJ-A0ZB-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	add0b0f6-b4a8-4b73-b634-c3600dc567d5	d078cbf9-7e5f-47cb-9f33-725a33f31c1b	g.chr19:16548625C>T	uc002ndz.1	-	5	271	c.265G>A	c.(265-267)GTT>ATT	p.V89I	EPS15L1_uc002ndx.2_Missense_Mutation_p.V89I|EPS15L1_uc002ndy.2_RNA|EPS15L1_uc010xpe.1_5'Flank|EPS15L1_uc010xpf.1_5'UTR|EPS15L1_uc002nea.1_Missense_Mutation_p.V89I|EPS15L1_uc010eah.1_Missense_Mutation_p.V89I|EPS15L1_uc002neb.1_5'Flank|EPS15L1_uc002nec.1_Missense_Mutation_p.V89I	NM_021235	NP_067058	Q9UBC2	EP15R_HUMAN	epidermal growth factor receptor pathway	89	EH 1.				endocytosis|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway	coated pit|nucleus|plasma membrane	calcium ion binding			ovary(3)|skin(2)	5						CTCAAGGTAACTTCATGGCCA	0.438000													7	53	---	---	---	---	0	0	0.029380	0	0
KIR2DL1	3802	broad.mit.edu	37	19	55286820	55286820	+	Missense_Mutation	SNP	C	A	A			TCGA-BJ-A0ZB-01A-11D-A10S-08	TCGA-BJ-A0ZB-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	add0b0f6-b4a8-4b73-b634-c3600dc567d5	d078cbf9-7e5f-47cb-9f33-725a33f31c1b	g.chr19:55286820C>A	uc002qhb.1	+	4	612	c.574C>A	c.(574-576)CAC>AAC	p.H192N	KIR2DS4_uc010yfj.1_Intron|KIR2DS4_uc010yfk.1_Intron|KIR2DL3_uc010erw.1_Intron|KIR2DL1_uc002qgz.1_Intron|KIR2DL3_uc002qha.1_RNA|KIR3DP1_uc010yfi.1_Intron|KIR2DL1_uc010erz.1_Missense_Mutation_p.H192N	NM_014218	NP_055033	P43626	KI2L1_HUMAN	killer cell immunoglobulin-like receptor, two	192	Extracellular (Potential).|Ig-like C2-type 2.				immune response|natural killer cell inhibitory signaling pathway	integral to plasma membrane	protein binding|receptor activity				0				GBM - Glioblastoma multiforme(193;0.0192)		CCCTGCCACCCACGGAGGGAC	0.567000													8	148	---	---	---	---	0.00307968	0.00328777	0.038147	1	0
CD207	50489	broad.mit.edu	37	2	71058862	71058862	+	Missense_Mutation	SNP	T	C	C			TCGA-BJ-A0ZB-01A-11D-A10S-08	TCGA-BJ-A0ZB-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	add0b0f6-b4a8-4b73-b634-c3600dc567d5	d078cbf9-7e5f-47cb-9f33-725a33f31c1b	g.chr2:71058862T>C	uc002shg.2	-	5	853	c.806A>G	c.(805-807)GAC>GGC	p.D269G		NM_015717	NP_056532	Q9UJ71	CLC4K_HUMAN	CD207 antigen, langerin	269	C-type lectin.|Extracellular (Potential).				defense response to virus	endocytic vesicle|integral to membrane	mannose binding			ovary(1)|lung(1)	2						GAATGGCGTGTCATCCACCCA	0.572000													5	125	---	---	---	---	0	0	0.014758	0	0
TTN	7273	broad.mit.edu	37	2	179408637	179408637	+	Silent	SNP	G	A	A			TCGA-BJ-A0ZB-01A-11D-A10S-08	TCGA-BJ-A0ZB-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	add0b0f6-b4a8-4b73-b634-c3600dc567d5	d078cbf9-7e5f-47cb-9f33-725a33f31c1b	g.chr2:179408637G>A	uc010zfg.1	-	295	88754	c.88530C>T	c.(88528-88530)TAC>TAT	p.Y29510Y	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.Y23205Y|TTN_uc010zfi.1_Silent_p.Y23138Y|TTN_uc010zfj.1_Silent_p.Y23013Y	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	30437							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTCCAGCATCGTACCGATTAA	0.413000													44	74	---	---	---	---	0	0	0.036044	0	0
HTR2B	3357	broad.mit.edu	37	2	231973299	231973299	+	Missense_Mutation	SNP	G	C	C			TCGA-BJ-A0ZB-01A-11D-A10S-08	TCGA-BJ-A0ZB-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	add0b0f6-b4a8-4b73-b634-c3600dc567d5	d078cbf9-7e5f-47cb-9f33-725a33f31c1b	g.chr2:231973299G>C	uc002vro.2	-	4	1883	c.1378C>G	c.(1378-1380)CTA>GTA	p.L460V	PSMD1_uc002vrm.1_Intron|PSMD1_uc010fxu.1_Intron|PSMD1_uc002vrn.1_Intron|HTR2B_uc010fxv.2_Missense_Mutation_p.L393V	NM_000867	NP_000858	P41595	5HT2B_HUMAN	5-hydroxytryptamine (serotonin) receptor 2B	460	Cytoplasmic (By similarity).				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|calcium-mediated signaling|cardiac muscle hypertrophy|cellular response to calcium ion|cellular response to temperature stimulus|cGMP biosynthetic process|embryonic morphogenesis|ERK1 and ERK2 cascade|G-protein coupled receptor internalization|heart morphogenesis|intestine smooth muscle contraction|negative regulation of apoptosis|negative regulation of autophagy|neural crest cell migration|phosphatidylinositol 3-kinase cascade|phosphatidylinositol biosynthetic process|phosphorylation|positive regulation of cell division|positive regulation of cytokine production|positive regulation of cytokine secretion|positive regulation of endothelial cell proliferation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of MAP kinase activity|positive regulation of nitric-oxide synthase activity|protein kinase C signaling cascade|regulation of behavior|release of sequestered calcium ion into cytosol|response to drug|vasoconstriction	cytoplasm|integral to membrane|plasma membrane	calcium channel activity|drug binding|G-protein alpha-subunit binding|phosphatidylinositol phospholipase C activity|Ras GTPase activator activity|serotonin binding|serotonin receptor activity				0		Renal(207;0.025)|all_hematologic(139;0.094)|Acute lymphoblastic leukemia(138;0.164)|Medulloblastoma(418;0.232)		Epithelial(121;4.48e-11)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(119;0.0141)	Chlorprothixene(DB01239)|Eletriptan(DB00216)|Fenfluramine(DB00574)|Methotrimeprazine(DB01403)|Minaprine(DB00805)|Quetiapine(DB01224)|Sumatriptan(DB00669)|Tegaserod(DB01079)|Triflupromazine(DB00508)	GTATCTAGTAGAATGATTGAT	0.393000													3	72	---	---	---	---	0	0	0.004672	0	0
SFRS15	57466	broad.mit.edu	37	21	33043813	33043813	+	Missense_Mutation	SNP	C	G	G			TCGA-BJ-A0ZB-01A-11D-A10S-08	TCGA-BJ-A0ZB-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	add0b0f6-b4a8-4b73-b634-c3600dc567d5	d078cbf9-7e5f-47cb-9f33-725a33f31c1b	g.chr21:33043813C>G	uc002ypd.2	-	20	3769	c.3343G>C	c.(3343-3345)GAG>CAG	p.E1115Q	SFRS15_uc002ype.2_Missense_Mutation_p.E1093Q|SFRS15_uc010glu.2_Missense_Mutation_p.E1100Q	NM_020706	NP_065757	O95104	SFR15_HUMAN	splicing factor, arginine/serine-rich 15 isoform	1115						nucleus	nucleotide binding|RNA binding				0						ACTGCAGCCTCAGACACCCCC	0.517000													7	100	---	---	---	---	0	0	0.038147	0	0
LOC96610	96610	broad.mit.edu	37	22	22663086	22663087	+	RNA	DNP	TA	GG	GG	rs1054157	by1000genomes	TCGA-BJ-A0ZB-01A-11D-A10S-08	TCGA-BJ-A0ZB-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	add0b0f6-b4a8-4b73-b634-c3600dc567d5	d078cbf9-7e5f-47cb-9f33-725a33f31c1b	g.chr22:22663086_22663087TA>GG	uc011aim.1	+	29		c.1859_1860TA>GG			LOC96610_uc011aiq.1_RNA|LOC96610_uc011aip.1_RNA|LOC96610_uc010gto.2_RNA					Parts of antibodies, mostly variable regions.												0						AGCTGCCACATAAGTTGTCCTT	0.302000													4	40	---	---	---	---	0	0	0.004672	0	0
RAB36	9609	broad.mit.edu	37	22	23487734	23487734	+	Missense_Mutation	SNP	C	T	T			TCGA-BJ-A0ZB-01A-11D-A10S-08	TCGA-BJ-A0ZB-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	add0b0f6-b4a8-4b73-b634-c3600dc567d5	d078cbf9-7e5f-47cb-9f33-725a33f31c1b	g.chr22:23487734C>T	uc002zwv.1	+	1	222	c.182C>T	c.(181-183)TCG>TTG	p.S61L	RAB36_uc010gtw.1_Missense_Mutation_p.S61L	NM_004914	NP_004905	O95755	RAB36_HUMAN	RAB36, member RAS oncogene family	61					protein transport|small GTPase mediated signal transduction	Golgi membrane	GTP binding			ovary(1)|central_nervous_system(1)	2	all_hematologic(9;0.0197)|Acute lymphoblastic leukemia(84;0.181)			READ - Rectum adenocarcinoma(21;0.155)		TCACAGCCATCGCTGGTGAGT	0.721000													3	41	---	---	---	---	0	0	0.009096	0	0
FANCD2	2177	broad.mit.edu	37	3	10091163	10091163	+	Missense_Mutation	SNP	A	G	G			TCGA-BJ-A0ZB-01A-11D-A10S-08	TCGA-BJ-A0ZB-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	add0b0f6-b4a8-4b73-b634-c3600dc567d5	d078cbf9-7e5f-47cb-9f33-725a33f31c1b	g.chr3:10091163A>G	uc003buw.2	+	17	1597	c.1519A>G	c.(1519-1521)ATG>GTG	p.M507V	FANCD2_uc003bux.1_Missense_Mutation_p.M507V|FANCD2_uc003buy.1_Missense_Mutation_p.M507V|FANCD2_uc010hcw.1_RNA	NM_033084	NP_149075	Q9BXW9	FACD2_HUMAN	Fanconi anemia complementation group D2 isoform	507					DNA repair|response to gamma radiation	nucleoplasm	protein binding|protein binding			central_nervous_system(2)|ovary(1)|skin(1)	4				OV - Ovarian serous cystadenocarcinoma(96;0.148)		CCCATCTGCTATGATGATGAA	0.418000			D|Mis|N|F			AML|leukemia		Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				6	258	---	---	---	---	0	0	0.029380	0	0
CAMKV	79012	broad.mit.edu	37	3	49899480	49899480	+	Silent	SNP	C	T	T			TCGA-BJ-A0ZB-01A-11D-A10S-08	TCGA-BJ-A0ZB-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	add0b0f6-b4a8-4b73-b634-c3600dc567d5	d078cbf9-7e5f-47cb-9f33-725a33f31c1b	g.chr3:49899480C>T	uc003cxt.1	-	3	418	c.225G>A	c.(223-225)AAG>AAA	p.K75K	CAMKV_uc011bcy.1_5'UTR|CAMKV_uc003cxv.1_Silent_p.K75K|CAMKV_uc003cxw.1_5'UTR|CAMKV_uc003cxx.1_5'UTR|CAMKV_uc003cxu.2_Silent_p.K75K|CAMKV_uc011bcz.1_Intron|CAMKV_uc011bda.1_Silent_p.K75K|CAMKV_uc011bdb.1_RNA	NM_024046	NP_076951	Q8NCB2	CAMKV_HUMAN	CaM kinase-like vesicle-associated	75	Protein kinase.					cytoplasmic vesicle membrane|plasma membrane	ATP binding|protein serine/threonine kinase activity			ovary(2)|lung(2)|large_intestine(2)|central_nervous_system(1)	7				BRCA - Breast invasive adenocarcinoma(193;4.62e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.00551)|Kidney(197;0.00621)		AAACTCACATCTTGAGGATGC	0.597000													4	48	---	---	---	---	0	0	0.009096	0	0
TOPBP1	11073	broad.mit.edu	37	3	133329896	133329896	+	Missense_Mutation	SNP	C	G	G			TCGA-BJ-A0ZB-01A-11D-A10S-08	TCGA-BJ-A0ZB-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	add0b0f6-b4a8-4b73-b634-c3600dc567d5	d078cbf9-7e5f-47cb-9f33-725a33f31c1b	g.chr3:133329896C>G	uc003eps.2	-	25	4257	c.4125G>C	c.(4123-4125)ATG>ATC	p.M1375I		NM_007027	NP_008958	Q92547	TOPB1_HUMAN	topoisomerase (DNA) II binding protein 1	1375					DNA repair|response to ionizing radiation	microtubule organizing center|PML body|spindle pole	DNA binding|protein C-terminus binding			ovary(2)|kidney(2)|skin(1)|lung(1)|pancreas(1)	7						TTCTCCATCTCATTGCTGCAA	0.353000								Other_conserved_DNA_damage_response_genes					8	167	---	---	---	---	0	0	0.038147	0	0
AMOTL2	51421	broad.mit.edu	37	3	134089564	134089564	+	Missense_Mutation	SNP	G	A	A			TCGA-BJ-A0ZB-01A-11D-A10S-08	TCGA-BJ-A0ZB-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	add0b0f6-b4a8-4b73-b634-c3600dc567d5	d078cbf9-7e5f-47cb-9f33-725a33f31c1b	g.chr3:134089564G>A	uc003eqf.2	-	2	1003	c.886C>T	c.(886-888)CAC>TAC	p.H296Y	AMOTL2_uc003eqg.1_Missense_Mutation_p.H238Y|AMOTL2_uc003eqh.1_Missense_Mutation_p.H238Y	NM_016201	NP_057285	Q9Y2J4	AMOL2_HUMAN	angiomotin like 2	238										large_intestine(1)	1						TGCTGGAAGTGCGGGCTGCCG	0.587000													6	85	---	---	---	---	0	0	0.029380	0	0
ATR	545	broad.mit.edu	37	3	142268516	142268516	+	Splice_Site	SNP	C	G	G			TCGA-BJ-A0ZB-01A-11D-A10S-08	TCGA-BJ-A0ZB-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	add0b0f6-b4a8-4b73-b634-c3600dc567d5	d078cbf9-7e5f-47cb-9f33-725a33f31c1b	g.chr3:142268516C>G	uc003eux.3	-	15	3099	c.2977_splice	c.e15-1	p.R993_splice		NM_001184	NP_001175	Q13535	ATR_HUMAN	ataxia telangiectasia and Rad3 related protein						cell cycle|cellular response to gamma radiation|cellular response to UV|DNA damage checkpoint|DNA repair|DNA replication|multicellular organismal development|negative regulation of DNA replication|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|protein autophosphorylation|replicative senescence	PML body	ATP binding|DNA binding|MutLalpha complex binding|MutSalpha complex binding|protein serine/threonine kinase activity			lung(5)|skin(5)|breast(4)|ovary(3)|stomach(1)|central_nervous_system(1)|liver(1)	20						GTAATGTCCTCTGAAAAAGAA	0.343000								Other_conserved_DNA_damage_response_genes					3	49	---	---	---	---	0	0	0.014758	0	0
PLCH1	23007	broad.mit.edu	37	3	155200705	155200705	+	Missense_Mutation	SNP	G	C	C			TCGA-BJ-A0ZB-01A-11D-A10S-08	TCGA-BJ-A0ZB-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	add0b0f6-b4a8-4b73-b634-c3600dc567d5	d078cbf9-7e5f-47cb-9f33-725a33f31c1b	g.chr3:155200705G>C	uc011bok.1	-	23	3411	c.3134C>G	c.(3133-3135)TCT>TGT	p.S1045C	PLCH1_uc011boj.1_3'UTR|PLCH1_uc011bol.1_Missense_Mutation_p.S1007C	NM_001130960	NP_001124432	Q4KWH8	PLCH1_HUMAN	phospholipase C eta 1 isoform a	1045					lipid catabolic process|phosphatidylinositol-mediated signaling	membrane	calcium ion binding|calcium-dependent phospholipase C activity|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(3)|ovary(1)	4			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			GTGGGCAGTAGATACAATGGT	0.463000													3	177	---	---	---	---	0	0	0.004672	0	0
TTC14	151613	broad.mit.edu	37	3	180328136	180328136	+	Missense_Mutation	SNP	A	G	G			TCGA-BJ-A0ZB-01A-11D-A10S-08	TCGA-BJ-A0ZB-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	add0b0f6-b4a8-4b73-b634-c3600dc567d5	d078cbf9-7e5f-47cb-9f33-725a33f31c1b	g.chr3:180328136A>G	uc003fkk.2	+	12	2251	c.2119A>G	c.(2119-2121)ACA>GCA	p.T707A	TTC14_uc003fkl.2_3'UTR|TTC14_uc003fkm.2_Intron	NM_133462	NP_597719	Q96N46	TTC14_HUMAN	tetratricopeptide repeat domain 14 isoform a	707							RNA binding			ovary(1)	1	all_cancers(143;9.31e-15)|Ovarian(172;0.0212)		OV - Ovarian serous cystadenocarcinoma(80;5.62e-23)|GBM - Glioblastoma multiforme(14;0.000558)			CCGTTTAAATACAAATCAAGG	0.378000													3	101	---	---	---	---	0	0	0.004672	0	0
ANK2	287	broad.mit.edu	37	4	114263046	114263046	+	Missense_Mutation	SNP	G	A	A			TCGA-BJ-A0ZB-01A-11D-A10S-08	TCGA-BJ-A0ZB-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	add0b0f6-b4a8-4b73-b634-c3600dc567d5	d078cbf9-7e5f-47cb-9f33-725a33f31c1b	g.chr4:114263046G>A	uc003ibe.3	+	33	4196	c.4096G>A	c.(4096-4098)GAG>AAG	p.E1366K	ANK2_uc003ibd.3_Missense_Mutation_p.E1357K|ANK2_uc003ibf.3_Missense_Mutation_p.E1366K|ANK2_uc011cgc.1_Missense_Mutation_p.E542K|ANK2_uc003ibg.3_Missense_Mutation_p.E361K|ANK2_uc003ibh.3_Missense_Mutation_p.E40K|ANK2_uc011cgb.1_Missense_Mutation_p.E1381K	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	1333					axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		AAATTTTGCTGAGGTGGCCAG	0.373000													12	102	---	---	---	---	0	0	0.016723	0	0
KIAA0922	23240	broad.mit.edu	37	4	154533507	154533507	+	Silent	SNP	T	C	C			TCGA-BJ-A0ZB-01A-11D-A10S-08	TCGA-BJ-A0ZB-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	add0b0f6-b4a8-4b73-b634-c3600dc567d5	d078cbf9-7e5f-47cb-9f33-725a33f31c1b	g.chr4:154533507T>C	uc003inm.3	+	26	3571	c.3519T>C	c.(3517-3519)TCT>TCC	p.S1173S	KIAA0922_uc010ipp.2_Silent_p.S1174S|KIAA0922_uc010ipq.2_Silent_p.S942S	NM_015196	NP_056011	A2VDJ0	T131L_HUMAN	hypothetical protein LOC23240 isoform 2	1173	Cytoplasmic (Potential).					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2	all_hematologic(180;0.093)	Renal(120;0.118)				ACAAAACATCTAGAGAAGACA	0.343000													35	38	---	---	---	---	0	0	0.054565	0	0
ETF1	2107	broad.mit.edu	37	5	137844496	137844496	+	Missense_Mutation	SNP	C	G	G			TCGA-BJ-A0ZB-01A-11D-A10S-08	TCGA-BJ-A0ZB-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	add0b0f6-b4a8-4b73-b634-c3600dc567d5	d078cbf9-7e5f-47cb-9f33-725a33f31c1b	g.chr5:137844496C>G	uc003ldc.3	-	10	1258	c.1093G>C	c.(1093-1095)GAA>CAA	p.E365Q	ETF1_uc011cyv.1_Missense_Mutation_p.E351Q|ETF1_uc010jex.2_RNA|ETF1_uc003ldd.3_Missense_Mutation_p.E332Q	NM_004730	NP_004721	P62495	ERF1_HUMAN	eukaryotic translation termination factor 1	365					nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|protein methylation|regulation of translational termination	cytoplasm	protein binding|ribosome binding|translation release factor activity, codon specific			ovary(2)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00325)			AGCTCATGTTCCTGTCCGGTC	0.433000													8	161	---	---	---	---	0	0	0.038147	0	0
DBN1	1627	broad.mit.edu	37	5	176893800	176893800	+	Missense_Mutation	SNP	C	G	G			TCGA-BJ-A0ZB-01A-11D-A10S-08	TCGA-BJ-A0ZB-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	add0b0f6-b4a8-4b73-b634-c3600dc567d5	d078cbf9-7e5f-47cb-9f33-725a33f31c1b	g.chr5:176893800C>G	uc003mgy.2	-	8	916	c.744G>C	c.(742-744)AAG>AAC	p.K248N	DBN1_uc003mgx.2_Missense_Mutation_p.K250N|DBN1_uc010jkn.1_Missense_Mutation_p.K198N|DBN1_uc003mgz.1_Missense_Mutation_p.K185N	NM_004395	NP_004386	Q16643	DREB_HUMAN	drebrin 1 isoform a	248					actin filament organization|regulation of dendrite development|regulation of neuronal synaptic plasticity	actomyosin|cytoplasm|dendrite	actin binding|profilin binding			breast(3)|ovary(1)|lung(1)|skin(1)	6	all_cancers(89;2.17e-05)|Renal(175;0.000269)|Lung NSC(126;0.0014)|all_lung(126;0.0025)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			TCAACCGCCTCTTGGCCTCTT	0.602000													4	260	---	---	---	---	0	0	0.009096	0	0
TRIM52	84851	broad.mit.edu	37	5	180687578	180687578	+	Missense_Mutation	SNP	G	C	C			TCGA-BJ-A0ZB-01A-11D-A10S-08	TCGA-BJ-A0ZB-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	add0b0f6-b4a8-4b73-b634-c3600dc567d5	d078cbf9-7e5f-47cb-9f33-725a33f31c1b	g.chr5:180687578G>C	uc003mnp.2	-	1	542	c.237C>G	c.(235-237)GAC>GAG	p.D79E	uc003mnq.2_5'Flank	NM_032765	NP_116154	Q96A61	TRI52_HUMAN	tripartite motif-containing 52	79	Glu-rich.					intracellular	zinc ion binding				0	all_cancers(89;8.79e-06)|all_epithelial(37;1.13e-06)|Renal(175;0.000159)|Lung NSC(126;0.00354)|all_lung(126;0.00609)|Breast(19;0.0654)	all_cancers(40;0.0106)|Medulloblastoma(196;0.0392)|all_neural(177;0.0529)|all_hematologic(541;0.0588)|all_lung(500;0.149)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.232)		GAATGGAGCCGTCCCATCCAT	0.373000													4	199	---	---	---	---	0	0	0.014758	0	0
MDC1	9656	broad.mit.edu	37	6	30681830	30681830	+	Silent	SNP	G	A	A			TCGA-BJ-A0ZB-01A-11D-A10S-08	TCGA-BJ-A0ZB-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	add0b0f6-b4a8-4b73-b634-c3600dc567d5	d078cbf9-7e5f-47cb-9f33-725a33f31c1b	g.chr6:30681830G>A	uc003nrg.3	-	3	707	c.267C>T	c.(265-267)CTC>CTT	p.L89L	MDC1_uc003nrf.3_5'Flank|MDC1_uc011dmp.1_5'UTR|MDC1_uc003nrh.1_5'UTR|MDC1_uc003nri.2_Silent_p.L89L	NM_014641	NP_055456	Q14676	MDC1_HUMAN	mediator of DNA-damage checkpoint 1	89	Interaction with the MRN complex.|FHA.|Interaction with CHEK2.				cell cycle|double-strand break repair via homologous recombination|intra-S DNA damage checkpoint	focal adhesion|nucleoplasm	FHA domain binding|protein C-terminus binding			breast(2)|ovary(1)|kidney(1)	4						CACAGTCTCGGAGGATAGGTG	0.517000								Other_conserved_DNA_damage_response_genes					4	98	---	---	---	---	0	0	0.014758	0	0
MUC21	394263	broad.mit.edu	37	6	30954349	30954349	+	Missense_Mutation	SNP	A	G	G			TCGA-BJ-A0ZB-01A-11D-A10S-08	TCGA-BJ-A0ZB-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	add0b0f6-b4a8-4b73-b634-c3600dc567d5	d078cbf9-7e5f-47cb-9f33-725a33f31c1b	g.chr6:30954349A>G	uc003nsh.2	+	2	648	c.397A>G	c.(397-399)AGC>GGC	p.S133G	MUC21_uc003nsi.1_RNA	NM_001010909	NP_001010909	Q5SSG8	MUC21_HUMAN	mucin 21 precursor	133	Ser-rich.|7.|28 X 15 AA approximate tandem repeats.|Extracellular (Potential).					integral to membrane|plasma membrane				ovary(1)|skin(1)	2						CAGTGGGGCCAGCACAGCCAC	0.612000													6	270	---	---	---	---	0	0	0.021553	0	0
ZBTB22	9278	broad.mit.edu	37	6	33283196	33283196	+	Missense_Mutation	SNP	G	A	A			TCGA-BJ-A0ZB-01A-11D-A10S-08	TCGA-BJ-A0ZB-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	add0b0f6-b4a8-4b73-b634-c3600dc567d5	d078cbf9-7e5f-47cb-9f33-725a33f31c1b	g.chr6:33283196G>A	uc003oeb.2	-	2	1650	c.1498C>T	c.(1498-1500)CGG>TGG	p.R500W	TAPBP_uc003odx.1_5'Flank|TAPBP_uc010jus.1_5'Flank|TAPBP_uc003ody.2_5'Flank|TAPBP_uc003odz.2_5'Flank|TAPBP_uc010jut.1_5'Flank|TAPBP_uc011drc.1_5'Flank|ZBTB22_uc010juu.2_Missense_Mutation_p.R500W	NM_005453	NP_005444	O15209	ZBT22_HUMAN	zinc finger and BTB domain containing 22	500	C2H2-type 1; atypical.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						TGCCGGTCCCGCATGCTCTTG	0.567000													5	245	---	---	---	---	0	0	0.014758	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-BJ-A0ZB-01A-11D-A10S-08	TCGA-BJ-A0ZB-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	add0b0f6-b4a8-4b73-b634-c3600dc567d5	d078cbf9-7e5f-47cb-9f33-725a33f31c1b	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				38	63	---	---	---	---	0	0	0.025465	0	0
RAB11FIP1	80223	broad.mit.edu	37	8	37720621	37720621	+	Missense_Mutation	SNP	G	A	A			TCGA-BJ-A0ZB-01A-11D-A10S-08	TCGA-BJ-A0ZB-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	add0b0f6-b4a8-4b73-b634-c3600dc567d5	d078cbf9-7e5f-47cb-9f33-725a33f31c1b	g.chr8:37720621G>A	uc003xkm.1	-	6	3688	c.3644C>T	c.(3643-3645)CCC>CTC	p.P1215L	RAB11FIP1_uc010lvz.1_Missense_Mutation_p.P429L|RAB11FIP1_uc003xkn.1_Missense_Mutation_p.P581L|RAB11FIP1_uc003xkl.1_Missense_Mutation_p.P544L	NM_001002814	NP_001002814	Q6WKZ4	RFIP1_HUMAN	RAB11 family interacting protein 1 isoform 3	1215	FIP-RBD.				protein transport	centrosome|phagocytic vesicle membrane|recycling endosome	protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Lung NSC(58;0.118)|all_lung(54;0.195)	LUSC - Lung squamous cell carcinoma(8;3.62e-11)			AGGGTCCGAGGGGCTGTATTT	0.448000													5	134	---	---	---	---	0	0	0.021553	0	0
PRKDC	5591	broad.mit.edu	37	8	48772221	48772221	+	Nonsense_Mutation	SNP	G	C	C			TCGA-BJ-A0ZB-01A-11D-A10S-08	TCGA-BJ-A0ZB-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	add0b0f6-b4a8-4b73-b634-c3600dc567d5	d078cbf9-7e5f-47cb-9f33-725a33f31c1b	g.chr8:48772221G>C	uc003xqi.2	-	47	6215	c.6158C>G	c.(6157-6159)TCA>TGA	p.S2053*	PRKDC_uc003xqj.2_Nonsense_Mutation_p.S2053*|PRKDC_uc011ldh.1_Intron	NM_006904	NP_008835	P78527	PRKDC_HUMAN	protein kinase, DNA-activated, catalytic	2053					cellular response to insulin stimulus|double-strand break repair via nonhomologous end joining|peptidyl-serine phosphorylation|positive regulation of transcription from RNA polymerase II promoter	DNA-dependent protein kinase-DNA ligase 4 complex|transcription factor complex	ATP binding|DNA binding|DNA-dependent protein kinase activity|transcription factor binding			lung(12)|central_nervous_system(9)|ovary(6)|skin(4)|large_intestine(3)	34		all_cancers(86;0.0336)|all_epithelial(80;0.00111)|Lung NSC(129;0.00363)|all_lung(136;0.00391)				GGAGCTGTATGAATAGCTCTG	0.438000								NHEJ					6	206	---	---	---	---	0	0	0.021553	0	0
RUNX1T1	862	broad.mit.edu	37	8	92972658	92972658	+	Missense_Mutation	SNP	C	G	G			TCGA-BJ-A0ZB-01A-11D-A10S-08	TCGA-BJ-A0ZB-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	add0b0f6-b4a8-4b73-b634-c3600dc567d5	d078cbf9-7e5f-47cb-9f33-725a33f31c1b	g.chr8:92972658C>G	uc003yfd.2	-	11	1711	c.1627G>C	c.(1627-1629)GAC>CAC	p.D543H	RUNX1T1_uc003yfc.1_Missense_Mutation_p.D516H|RUNX1T1_uc003yfe.1_Missense_Mutation_p.D506H|RUNX1T1_uc010mao.2_Missense_Mutation_p.D516H|RUNX1T1_uc011lgi.1_Missense_Mutation_p.D554H|uc010mam.2_5'Flank|RUNX1T1_uc010man.1_Missense_Mutation_p.D168H|RUNX1T1_uc003yfb.1_Missense_Mutation_p.D506H	NM_175634	NP_783552	Q06455	MTG8_HUMAN	acute myelogenous leukemia 1 translocation 1	543	MYND-type.				generation of precursor metabolites and energy	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(9)|large_intestine(3)|breast(2)|central_nervous_system(1)|pancreas(1)	16			BRCA - Breast invasive adenocarcinoma(11;0.0141)			TTCTCCCAGTCTTTGTGCTGG	0.567000													5	51	---	---	---	---	0	0	0.021553	0	0
ASAP1	50807	broad.mit.edu	37	8	131067027	131067027	+	Missense_Mutation	SNP	C	T	T			TCGA-BJ-A0ZB-01A-11D-A10S-08	TCGA-BJ-A0ZB-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	add0b0f6-b4a8-4b73-b634-c3600dc567d5	d078cbf9-7e5f-47cb-9f33-725a33f31c1b	g.chr8:131067027C>T	uc003yta.1	-	29	3368	c.3340G>A	c.(3340-3342)GAA>AAA	p.E1114K	ASAP1_uc003ysz.1_Missense_Mutation_p.E925K|ASAP1_uc011liw.1_Missense_Mutation_p.E1107K	NM_018482	NP_060952	Q9ULH1	ASAP1_HUMAN	development and differentiation enhancing factor	1114	SH3.				cilium morphogenesis|filopodium assembly|regulation of ARF GTPase activity|signal transduction	cytoplasm|membrane	ARF GTPase activator activity|cytoskeletal adaptor activity|SH3 domain binding|zinc ion binding			ovary(4)	4						CCCTTCCTTTCAGGCTGTCCT	0.527000													6	127	---	---	---	---	0	0	0.047766	0	0
FAM135B	51059	broad.mit.edu	37	8	139163752	139163752	+	Missense_Mutation	SNP	A	G	G			TCGA-BJ-A0ZB-01A-11D-A10S-08	TCGA-BJ-A0ZB-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	add0b0f6-b4a8-4b73-b634-c3600dc567d5	d078cbf9-7e5f-47cb-9f33-725a33f31c1b	g.chr8:139163752A>G	uc003yuy.2	-	13	3137	c.2966T>C	c.(2965-2967)GTG>GCG	p.V989A	FAM135B_uc003yux.2_Missense_Mutation_p.V890A|FAM135B_uc003yuz.2_RNA|FAM135B_uc003yva.2_Missense_Mutation_p.V551A|FAM135B_uc003yvb.2_Missense_Mutation_p.V551A	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	989										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			GGAATGGGTCACAGTGGGGCA	0.493000										HNSCC(54;0.14)			41	70	---	---	---	---	0	0	0.023175	0	0
OR1N2	138882	broad.mit.edu	37	9	125315950	125315950	+	Missense_Mutation	SNP	C	G	G			TCGA-BJ-A0ZB-01A-11D-A10S-08	TCGA-BJ-A0ZB-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	add0b0f6-b4a8-4b73-b634-c3600dc567d5	d078cbf9-7e5f-47cb-9f33-725a33f31c1b	g.chr9:125315950C>G	uc011lyx.1	+	1	502	c.502C>G	c.(502-504)CTA>GTA	p.L168V		NM_001004457	NP_001004457	Q8NGR9	OR1N2_HUMAN	olfactory receptor, family 1, subfamily N,	168	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4						GTGCTGGGTGCTAACCAACTG	0.532000													17	184	---	---	---	---	0	0	0.028581	0	0
ARHGAP6	395	broad.mit.edu	37	X	11200233	11200233	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BJ-A0ZB-01A-11D-A10S-08	TCGA-BJ-A0ZB-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	add0b0f6-b4a8-4b73-b634-c3600dc567d5	d078cbf9-7e5f-47cb-9f33-725a33f31c1b	g.chrX:11200233G>A	uc004cup.1	-	6	2152	c.1279C>T	c.(1279-1281)CAG>TAG	p.Q427*	ARHGAP6_uc004cuo.1_RNA|ARHGAP6_uc004cur.1_Nonsense_Mutation_p.Q427*|ARHGAP6_uc004cum.1_Nonsense_Mutation_p.Q224*|ARHGAP6_uc004cun.1_Nonsense_Mutation_p.Q247*|ARHGAP6_uc010neb.1_Nonsense_Mutation_p.Q249*|ARHGAP6_uc011mif.1_Nonsense_Mutation_p.Q224*	NM_013427	NP_038286	O43182	RHG06_HUMAN	Rho GTPase activating protein 6 isoform 1	427	Rho-GAP.				actin filament polymerization|activation of phospholipase C activity|negative regulation of focal adhesion assembly|negative regulation of stress fiber assembly|Rho protein signal transduction	actin filament|cytosol	phospholipase activator activity|phospholipase binding|Rho GTPase activator activity|SH3 domain binding|SH3/SH2 adaptor activity			urinary_tract(1)|lung(1)	2						CCCACTGTCTGGAGGCCTGCA	0.398000													6	165	---	---	---	---	0	0	0.021553	0	0
ACAD10	80724	broad.mit.edu	37	12	112185090	112185101	+	Splice_Site	DEL	CCCACTCAGGTT	-	-			TCGA-BJ-A0ZB-01A-11D-A10S-08	TCGA-BJ-A0ZB-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	add0b0f6-b4a8-4b73-b634-c3600dc567d5	d078cbf9-7e5f-47cb-9f33-725a33f31c1b	g.chr12:112185090_112185101delCCCACTCAGGTT	uc001tsq.2	+	16	2595	c.2395_splice	c.e16-1	p.V799_splice	ACAD10_uc001tsp.2_Splice_Site_p.V799_splice|ACAD10_uc009zvx.2_Splice_Site_p.V830_splice|ACAD10_uc001tss.1_Splice_Site	NM_025247	NP_079523	Q6JQN1	ACD10_HUMAN	acyl-Coenzyme A dehydrogenase family, member 10								acyl-CoA dehydrogenase activity|flavin adenine dinucleotide binding|hydrolase activity|transferase activity, transferring phosphorus-containing groups			ovary(2)	2						GAATATGCTCCCCACTCAGGTTGCCTCTTCAG	0.561													34	56	---	---	---	---					
Unknown	0	broad.mit.edu	37	13	31652509	31652516	+	IGR	DEL	AAGGAAGA	-	-	rs148041842	by1000genomes	TCGA-BJ-A0ZB-01A-11D-A10S-08	TCGA-BJ-A0ZB-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	add0b0f6-b4a8-4b73-b634-c3600dc567d5	d078cbf9-7e5f-47cb-9f33-725a33f31c1b	g.chr13:31652509_31652516delAAGGAAGA								C13orf26 (103358 upstream) : HSPH1 (58249 downstream)																							ggaaggaaggaaggaagaaagaaagaaa	0.192													4	6	---	---	---	---					
C17orf82	388407	broad.mit.edu	37	17	59489871	59489877	+	Frame_Shift_Del	DEL	GGCCTCG	-	-			TCGA-BJ-A0ZB-01A-11D-A10S-08	TCGA-BJ-A0ZB-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	add0b0f6-b4a8-4b73-b634-c3600dc567d5	d078cbf9-7e5f-47cb-9f33-725a33f31c1b	g.chr17:59489871_59489877delGGCCTCG	uc002izh.1	+	1	760_766	c.535_541delGGCCTCG	c.(535-543)GGCCTCGGGfs	p.G179fs		NM_203425	NP_982249	Q86X59	CQ082_HUMAN	hypothetical protein LOC388407	179_181											0						AGCCCGCCCAGGCCTCGGGCCTCGGCA	0.734													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	45267386	45267397	+	IGR	DEL	AGGAAGGAAGGA	-	-			TCGA-BJ-A0ZB-01A-11D-A10S-08	TCGA-BJ-A0ZB-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	add0b0f6-b4a8-4b73-b634-c3600dc567d5	d078cbf9-7e5f-47cb-9f33-725a33f31c1b	g.chr19:45267386_45267397delAGGAAGGAAGGA								BCL3 (4086 upstream) : CBLC (13729 downstream)																							aaagagggagaggaaggaaggaaggaaggaag	0.075													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	46846766	46846769	+	IGR	DEL	TTCC	-	-	rs71814107		TCGA-BJ-A0ZB-01A-11D-A10S-08	TCGA-BJ-A0ZB-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	add0b0f6-b4a8-4b73-b634-c3600dc567d5	d078cbf9-7e5f-47cb-9f33-725a33f31c1b	g.chr19:46846766_46846769delTTCC								HIF3A (77 upstream) : PPP5C (3525 downstream)																							CTTTTTTTTTttccttccttcctt	0.270													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	20	57840414	57840417	+	IGR	DEL	TTCC	-	-	rs57847155		TCGA-BJ-A0ZB-01A-11D-A10S-08	TCGA-BJ-A0ZB-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	add0b0f6-b4a8-4b73-b634-c3600dc567d5	d078cbf9-7e5f-47cb-9f33-725a33f31c1b	g.chr20:57840414_57840417delTTCC								ZNF831 (6249 upstream) : EDN3 (35082 downstream)																							cttccttcctttcctccttccttt	0.069													2	4	---	---	---	---					
OR5H15	403274	broad.mit.edu	37	3	97887844	97887844	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BJ-A0ZB-01A-11D-A10S-08	TCGA-BJ-A0ZB-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	add0b0f6-b4a8-4b73-b634-c3600dc567d5	d078cbf9-7e5f-47cb-9f33-725a33f31c1b	g.chr3:97887844delT	uc011bgu.1	+	1	301	c.301delT	c.(301-303)TTTfs	p.F101fs		NM_001005515	NP_001005515	A6NDH6	O5H15_HUMAN	olfactory receptor, family 5, subfamily H,	101	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						CAAGATACAATTTTTTTCCAT	0.383													8	334	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	150311028	150311029	+	IGR	INS	-	CTCTAT	CTCTAT	rs141505392	by1000genomes	TCGA-BJ-A0ZB-01A-11D-A10S-08	TCGA-BJ-A0ZB-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	add0b0f6-b4a8-4b73-b634-c3600dc567d5	d078cbf9-7e5f-47cb-9f33-725a33f31c1b	g.chr7:150311028_150311029insCTCTAT								GIMAP4 (39988 upstream) : GIMAP6 (11437 downstream)																							tctctatttacctctatctcta	0.094													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	69787982	69787985	+	IGR	DEL	AACA	-	-	rs59524350		TCGA-BJ-A0ZB-01A-11D-A10S-08	TCGA-BJ-A0ZB-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	add0b0f6-b4a8-4b73-b634-c3600dc567d5	d078cbf9-7e5f-47cb-9f33-725a33f31c1b	g.chr9:69787982_69787985delAACA								LOC100133920 (123033 upstream) : FOXD4L5 (387724 downstream)																							AGATAGAGGTAACAAACTTAAATA	0.368													4	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	91131649	91131650	+	IGR	INS	-	TTCCTTCC	TTCCTTCC	rs62580715		TCGA-BJ-A0ZB-01A-11D-A10S-08	TCGA-BJ-A0ZB-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	add0b0f6-b4a8-4b73-b634-c3600dc567d5	d078cbf9-7e5f-47cb-9f33-725a33f31c1b	g.chr9:91131649_91131650insTTCCTTCC								SPIN1 (38029 upstream) : NXNL2 (18366 downstream)																							accaCATTTTGttccttccttc	0.010													4	7	---	---	---	---					
TEX11	56159	broad.mit.edu	37	X	70053437	70053438	+	Frame_Shift_Ins	INS	-	AACT	AACT			TCGA-BJ-A0ZB-01A-11D-A10S-08	TCGA-BJ-A0ZB-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	add0b0f6-b4a8-4b73-b634-c3600dc567d5	d078cbf9-7e5f-47cb-9f33-725a33f31c1b	g.chrX:70053437_70053438insAACT	uc004dyl.2	-	9	738_739	c.576_577insAGTT	c.(574-579)GTTGCTfs	p.V192fs	TEX11_uc004dym.2_Frame_Shift_Ins_p.V177fs	NM_001003811	NP_001003811	Q8IYF3	TEX11_HUMAN	testis expressed sequence 11 isoform 1	192_193							protein binding			ovary(3)|breast(1)|skin(1)	5	Renal(35;0.156)					TCCCCTTGAGCAACTGCCTGAA	0.356													23	12	---	---	---	---					
Unknown	0	broad.mit.edu	37	Y	13524407	13524407	+	IGR	DEL	T	-	-			TCGA-BJ-A0ZB-01A-11D-A10S-08	TCGA-BJ-A0ZB-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	add0b0f6-b4a8-4b73-b634-c3600dc567d5	d078cbf9-7e5f-47cb-9f33-725a33f31c1b	g.chrY:13524407delT								None (None upstream) : None (None downstream)																							TGGAATGAGCTTTCTATGGAG	0.313													7	1	---	---	---	---					
