Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
CNOT2	4848	broad.mit.edu	37	12	70732321	70732321	+	Silent	SNP	A	G	G			TCGA-BJ-A3PU-01A-11D-A21Z-08	TCGA-BJ-A3PU-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba44b965-4879-47b7-8501-a0c2e28ed95d	bb3c6413-0dd0-419e-b1a7-6af329df63c7	g.chr12:70732321A>G	uc001svv.2	+	10	1578	c.999A>G	c.(997-999)AAA>AAG	p.K333K	CNOT2_uc009zro.2_Silent_p.K333K|CNOT2_uc009zrp.2_Silent_p.K313K|CNOT2_uc009zrq.2_Silent_p.K333K|CNOT2_uc001svw.1_Silent_p.K73K	NM_014515	NP_055330	Q9NZN8	CNOT2_HUMAN	CCR4-NOT transcription complex, subunit 2	333					nuclear-transcribed mRNA poly(A) tail shortening|regulation of transcription from RNA polymerase II promoter	cytosol|nucleus	protein binding|RNA polymerase II transcription cofactor activity				0	Renal(347;0.236)		GBM - Glioblastoma multiforme(1;4.77e-09)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00243)|STAD - Stomach adenocarcinoma(21;0.0118)			AGCAGAAAAAAGGGATCCAGG	0.323000													3	107	---	---	---	---	0	0	1	0	0
TSPAN8	7103	broad.mit.edu	37	12	71519144	71519144	+	Missense_Mutation	SNP	C	A	A			TCGA-BJ-A3PU-01A-11D-A21Z-08	TCGA-BJ-A3PU-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba44b965-4879-47b7-8501-a0c2e28ed95d	bb3c6413-0dd0-419e-b1a7-6af329df63c7	g.chr12:71519144C>A	uc009zrt.1	-	8	846	c.684G>T	c.(682-684)ATG>ATT	p.M228I	TSPAN8_uc001swk.1_Missense_Mutation_p.M228I|TSPAN8_uc001swj.1_Missense_Mutation_p.M228I	NM_004616	NP_004607	P19075	TSN8_HUMAN	transmembrane 4 superfamily member 3	228	Helical; (Potential).				protein glycosylation	integral to membrane|lysosome	signal transducer activity			skin(2)|lung(1)|central_nervous_system(1)	4			LUSC - Lung squamous cell carcinoma(43;0.24)|OV - Ovarian serous cystadenocarcinoma(12;0.244)			AATACAGGACCATAGAAAACA	0.353000													49	73	---	---	---	---	1.87854e-15	2.06034e-15	1	1	0
TMEM132D	121256	broad.mit.edu	37	12	130184856	130184856	+	Missense_Mutation	SNP	C	A	A			TCGA-BJ-A3PU-01A-11D-A21Z-08	TCGA-BJ-A3PU-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba44b965-4879-47b7-8501-a0c2e28ed95d	bb3c6413-0dd0-419e-b1a7-6af329df63c7	g.chr12:130184856C>A	uc009zyl.1	-	2	795	c.467G>T	c.(466-468)TGG>TTG	p.W156L		NM_133448	NP_597705	Q14C87	T132D_HUMAN	transmembrane protein 132D precursor	156	Extracellular (Potential).					integral to membrane				ovary(10)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	14	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0934)|Breast(359;0.133)		OV - Ovarian serous cystadenocarcinoma(86;0.000288)|Epithelial(86;0.0116)|all cancers(50;0.0246)		GCGGTCGTCCCAGTCTCTGCC	0.607000													13	35	---	---	---	---	1.61879e-10	1.71997e-10	1	1	0
Unknown	0	broad.mit.edu	37	15	102300091	102300091	+	5'Flank	SNP	A	G	G			TCGA-BJ-A3PU-01A-11D-A21Z-08	TCGA-BJ-A3PU-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba44b965-4879-47b7-8501-a0c2e28ed95d	bb3c6413-0dd0-419e-b1a7-6af329df63c7	g.chr15:102300091A>G	uc002bzk.2	-						uc002bzn.2_5'Flank|uc010uso.1_5'Flank|uc002bzs.2_5'Flank|uc010usv.1_5'Flank|uc002cam.2_RNA|uc010usx.1_5'Flank|uc002cao.2_5'Flank|uc002cap.2_5'Flank|uc002caq.2_5'Flank|uc010usz.1_5'Flank|uc010uta.1_5'Flank|uc002cas.2_5'Flank|uc002cat.1_5'Flank|uc002cau.2_5'Flank|uc010utb.1_5'Flank|uc002cav.2_5'Flank|uc002caw.2_5'Flank|uc002cax.2_5'Flank|uc010utc.1_5'Flank|uc002cay.2_5'Flank|uc002cbb.2_5'Flank|uc002cbc.1_5'Flank|uc002cbd.2_5'Flank|uc002cbe.2_5'Flank|uc002cbg.2_5'Flank|uc002cbh.2_5'Flank|uc002cbi.2_5'Flank|uc002cbk.2_5'Flank|uc002cbl.2_5'Flank|uc010utd.1_5'Flank|uc002cbm.2_5'Flank|uc002cbn.2_5'Flank|uc010ute.1_5'Flank					DQ593627																		GAAGACACTCATGGAGGAGTC	0.582000													3	12	---	---	---	---	0	0	1	0	0
Unknown	0	broad.mit.edu	37	15	102304770	102304770	+	5'Flank	SNP	C	T	T	rs62026988	by1000genomes	TCGA-BJ-A3PU-01A-11D-A21Z-08	TCGA-BJ-A3PU-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba44b965-4879-47b7-8501-a0c2e28ed95d	bb3c6413-0dd0-419e-b1a7-6af329df63c7	g.chr15:102304770C>T	uc002cbx.1	-						uc002ccc.1_5'Flank|uc002ccf.3_RNA|uc002ccg.3_5'Flank|uc010uth.1_5'Flank|uc002cci.2_5'Flank|uc002ccj.2_5'Flank|uc002cck.2_5'Flank|uc002ccl.1_5'Flank|uc002ccm.1_5'Flank					DQ582460																		GGCACAGCGGCGTGACGAGAC	0.592000													3	30	---	---	---	---	0	0	1	0	0
INO80E	283899	broad.mit.edu	37	16	30012109	30012109	+	Missense_Mutation	SNP	G	A	A			TCGA-BJ-A3PU-01A-11D-A21Z-08	TCGA-BJ-A3PU-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba44b965-4879-47b7-8501-a0c2e28ed95d	bb3c6413-0dd0-419e-b1a7-6af329df63c7	g.chr16:30012109G>A	uc002dvg.1	+	4	337	c.236G>A	c.(235-237)AGC>AAC	p.S79N	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|INO80E_uc002dvh.1_RNA|INO80E_uc002dvi.1_Missense_Mutation_p.S79N|INO80E_uc002dvj.1_RNA|INO80E_uc002dvk.1_Missense_Mutation_p.S79N	NM_173618	NP_775889	Q8NBZ0	IN80E_HUMAN	INO80 complex subunit E	79					DNA recombination|DNA repair|regulation of transcription, DNA-dependent|transcription, DNA-dependent	Ino80 complex				skin(1)	1						TCAGATAACAGCGAGACGGAG	0.587000													3	58	---	---	---	---	0	0	1	0	0
MYST1	84148	broad.mit.edu	37	16	31141896	31141896	+	Missense_Mutation	SNP	T	C	C			TCGA-BJ-A3PU-01A-11D-A21Z-08	TCGA-BJ-A3PU-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba44b965-4879-47b7-8501-a0c2e28ed95d	bb3c6413-0dd0-419e-b1a7-6af329df63c7	g.chr16:31141896T>C	uc002eay.2	+	9	1144	c.1126T>C	c.(1126-1128)TTC>CTC	p.F376L	MYST1_uc002eax.2_Missense_Mutation_p.F376L|MYST1_uc002eaz.2_Missense_Mutation_p.F218L|MYST1_uc002eba.2_Missense_Mutation_p.F160L|MYST1_uc002ebb.2_RNA	NM_032188	NP_115564	Q9H7Z6	MYST1_HUMAN	MYST histone acetyltransferase 1 isoform 1	376					histone H4-K16 acetylation|myeloid cell differentiation|negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MLL1 complex|MSL complex	histone acetyltransferase activity|metal ion binding|methylated histone residue binding|transcription factor binding			ovary(1)	1						CCTGCGGGACTTCCGGGGCAC	0.647000													17	39	---	---	---	---	0	0	1	0	0
CNOT1	23019	broad.mit.edu	37	16	58560012	58560012	+	Missense_Mutation	SNP	G	A	A			TCGA-BJ-A3PU-01A-11D-A21Z-08	TCGA-BJ-A3PU-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba44b965-4879-47b7-8501-a0c2e28ed95d	bb3c6413-0dd0-419e-b1a7-6af329df63c7	g.chr16:58560012G>A	uc002env.2	-	45	6777	c.6484C>T	c.(6484-6486)CCC>TCC	p.P2162S	CNOT1_uc002enw.2_RNA|CNOT1_uc002enu.3_Missense_Mutation_p.P2157S|CNOT1_uc002ent.2_Missense_Mutation_p.P100S|CNOT1_uc010vik.1_Missense_Mutation_p.P1119S	NM_016284	NP_057368	A5YKK6	CNOT1_HUMAN	CCR4-NOT transcription complex, subunit 1	2162					nuclear-transcribed mRNA poly(A) tail shortening|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol				ovary(4)|central_nervous_system(2)	6				Kidney(780;0.0722)|OV - Ovarian serous cystadenocarcinoma(108;0.173)|Epithelial(162;0.239)		AGAATCCGGGGAGCAATGTTA	0.378000													32	94	---	---	---	---	0	0	1	0	0
TTC39C	125488	broad.mit.edu	37	18	21646063	21646063	+	Missense_Mutation	SNP	G	A	A			TCGA-BJ-A3PU-01A-11D-A21Z-08	TCGA-BJ-A3PU-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba44b965-4879-47b7-8501-a0c2e28ed95d	bb3c6413-0dd0-419e-b1a7-6af329df63c7	g.chr18:21646063G>A	uc002kuw.2	+	3	756	c.304G>A	c.(304-306)GCT>ACT	p.A102T	TTC39C_uc002kuu.2_Missense_Mutation_p.A41T	NM_001135993	NP_001129465	Q8N584	TT39C_HUMAN	tetratricopeptide repeat domain 39C isoform 1	102							binding			ovary(1)	1						AAGTGAAGAGGCTGGAGTAAT	0.348000													12	41	---	---	---	---	0	0	1	0	0
ZNF700	90592	broad.mit.edu	37	19	12060967	12060967	+	Missense_Mutation	SNP	G	A	A			TCGA-BJ-A3PU-01A-11D-A21Z-08	TCGA-BJ-A3PU-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba44b965-4879-47b7-8501-a0c2e28ed95d	bb3c6413-0dd0-419e-b1a7-6af329df63c7	g.chr19:12060967G>A	uc002msu.2	+	4	2254	c.2128G>A	c.(2128-2130)GGA>AGA	p.G710R	ZNF700_uc010xme.1_Missense_Mutation_p.G728R|ZNF763_uc010xmf.1_Intron	NM_144566	NP_653167	Q9H0M5	ZN700_HUMAN	zinc finger protein 700	710	C2H2-type 18.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TAAGGAATGCGGAAAAGCATT	0.383000													3	58	---	---	---	---	0	0	1	0	0
CHST8	64377	broad.mit.edu	37	19	34263440	34263440	+	Silent	SNP	C	T	T			TCGA-BJ-A3PU-01A-11D-A21Z-08	TCGA-BJ-A3PU-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba44b965-4879-47b7-8501-a0c2e28ed95d	bb3c6413-0dd0-419e-b1a7-6af329df63c7	g.chr19:34263440C>T	uc002nus.3	+	5	1252	c.747C>T	c.(745-747)AGC>AGT	p.S249S	CHST8_uc002nut.3_Silent_p.S249S|CHST8_uc002nuu.2_Silent_p.S249S	NM_001127895	NP_001121367	Q9H2A9	CHST8_HUMAN	carbohydrate (N-acetylgalactosamine 4-0)	249	Lumenal (Potential).				carbohydrate biosynthetic process|central nervous system development|hormone biosynthetic process|proteoglycan biosynthetic process|sulfur compound metabolic process	Golgi membrane|integral to membrane	N-acetylgalactosamine 4-O-sulfotransferase activity			skin(2)|large_intestine(1)|ovary(1)	4	Esophageal squamous(110;0.162)					ACCGTCTCAGCACCTACACCA	0.602000													8	108	---	---	---	---	0	0	1	0	0
NLRP8	126205	broad.mit.edu	37	19	56466799	56466799	+	Missense_Mutation	SNP	G	A	A			TCGA-BJ-A3PU-01A-11D-A21Z-08	TCGA-BJ-A3PU-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba44b965-4879-47b7-8501-a0c2e28ed95d	bb3c6413-0dd0-419e-b1a7-6af329df63c7	g.chr19:56466799G>A	uc002qmh.2	+	3	1446	c.1375G>A	c.(1375-1377)GCA>ACA	p.A459T	NLRP8_uc010etg.2_Missense_Mutation_p.A459T	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8	459	NACHT.					cytoplasm	ATP binding			ovary(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|kidney(1)	13		Colorectal(82;0.000147)|Ovarian(87;0.17)		GBM - Glioblastoma multiforme(193;0.0695)		TCACTTGGCCGCAGACAGCAT	0.498000													4	118	---	---	---	---	0	0	1	0	0
CSRNP3	80034	broad.mit.edu	37	2	166536026	166536026	+	Silent	SNP	C	T	T			TCGA-BJ-A3PU-01A-11D-A21Z-08	TCGA-BJ-A3PU-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba44b965-4879-47b7-8501-a0c2e28ed95d	bb3c6413-0dd0-419e-b1a7-6af329df63c7	g.chr2:166536026C>T	uc002udf.2	+	7	1897	c.1521C>T	c.(1519-1521)TCC>TCT	p.S507S	CSRNP3_uc002udg.2_Silent_p.S507S	NM_024969	NP_079245	Q8WYN3	CSRN3_HUMAN	cysteine-serine-rich nuclear protein 3	507					apoptosis|positive regulation of apoptosis|positive regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|large_intestine(1)|skin(1)	5						GCTCCTCTTCCGAAAATGATA	0.512000													16	37	---	---	---	---	0	0	1	0	0
HLCS	3141	broad.mit.edu	37	21	38137432	38137432	+	Missense_Mutation	SNP	G	C	C			TCGA-BJ-A3PU-01A-11D-A21Z-08	TCGA-BJ-A3PU-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba44b965-4879-47b7-8501-a0c2e28ed95d	bb3c6413-0dd0-419e-b1a7-6af329df63c7	g.chr21:38137432G>C	uc010gnb.2	-	8	2762	c.1561C>G	c.(1561-1563)CTT>GTT	p.L521V	HLCS_uc002yvs.2_Missense_Mutation_p.L521V	NM_000411	NP_000402	P50747	BPL1_HUMAN	holocarboxylase synthetase	521					cell proliferation|histone biotinylation|response to biotin	chromatin|cytosol|mitochondrion|nuclear lamina|nuclear matrix	ATP binding|biotin binding|biotin-[acetyl-CoA-carboxylase] ligase activity|biotin-[methylcrotonoyl-CoA-carboxylase] ligase activity|biotin-[methylmalonyl-CoA-carboxytransferase] ligase activity|biotin-[propionyl-CoA-carboxylase (ATP-hydrolyzing)] ligase activity|enzyme binding			ovary(2)|breast(1)|kidney(1)|liver(1)	5		Myeloproliferative disorder(46;0.0422)			Biotin(DB00121)	AGAGTAGAAAGAGCACATCCC	0.572000													4	75	---	---	---	---	0	0	1	0	0
DSCAM	1826	broad.mit.edu	37	21	41539194	41539194	+	Missense_Mutation	SNP	T	C	C			TCGA-BJ-A3PU-01A-11D-A21Z-08	TCGA-BJ-A3PU-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba44b965-4879-47b7-8501-a0c2e28ed95d	bb3c6413-0dd0-419e-b1a7-6af329df63c7	g.chr21:41539194T>C	uc002yyq.1	-	16	3421	c.2969A>G	c.(2968-2970)GAA>GGA	p.E990G	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	990	Fibronectin type-III 2.|Extracellular (Potential).				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				CAGGTGAACTTCCTGAGGTGG	0.532000													3	100	---	---	---	---	0	0	1	0	0
SCAP	22937	broad.mit.edu	37	3	47470042	47470042	+	Missense_Mutation	SNP	T	A	A			TCGA-BJ-A3PU-01A-11D-A21Z-08	TCGA-BJ-A3PU-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba44b965-4879-47b7-8501-a0c2e28ed95d	bb3c6413-0dd0-419e-b1a7-6af329df63c7	g.chr3:47470042T>A	uc003crh.1	-	4	626	c.371A>T	c.(370-372)CAA>CTA	p.Q124L	SCAP_uc011baz.1_Intron|SCAP_uc003crg.2_Intron	NM_012235	NP_036367	Q12770	SCAP_HUMAN	SREBF chaperone protein	124	Lumenal (By similarity).				cholesterol metabolic process|negative regulation of cholesterol biosynthetic process|positive regulation of low-density lipoprotein particle receptor biosynthetic process|positive regulation of transcription via sterol regulatory element binding involved in ER-nuclear sterol response pathway	endoplasmic reticulum membrane|ER to Golgi transport vesicle membrane|Golgi membrane|integral to membrane	unfolded protein binding			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000278)|KIRC - Kidney renal clear cell carcinoma(197;0.00592)|Kidney(197;0.00679)		CTCCACCAGTTGGAATGCCCG	0.527000													7	201	---	---	---	---	0	0	1	0	0
TNIK	23043	broad.mit.edu	37	3	170802927	170802927	+	Missense_Mutation	SNP	T	A	A			TCGA-BJ-A3PU-01A-11D-A21Z-08	TCGA-BJ-A3PU-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba44b965-4879-47b7-8501-a0c2e28ed95d	bb3c6413-0dd0-419e-b1a7-6af329df63c7	g.chr3:170802927T>A	uc003fhh.2	-	25	3323	c.2978A>T	c.(2977-2979)GAT>GTT	p.D993V	TNIK_uc003fhi.2_Missense_Mutation_p.D938V|TNIK_uc003fhj.2_Missense_Mutation_p.D964V|TNIK_uc003fhk.2_Missense_Mutation_p.D985V|TNIK_uc003fhl.2_Missense_Mutation_p.D909V|TNIK_uc003fhm.2_Missense_Mutation_p.D930V|TNIK_uc003fhn.2_Missense_Mutation_p.D956V|TNIK_uc003fho.2_Missense_Mutation_p.D901V|TNIK_uc003fhg.2_Missense_Mutation_p.D171V|TNIK_uc003fhp.2_5'Flank	NM_015028	NP_055843	Q9UKE5	TNIK_HUMAN	TRAF2 and NCK interacting kinase isoform 1	993	Mediates interaction with NEDD4.				actin cytoskeleton reorganization|activation of JNKK activity|protein autophosphorylation|regulation of dendrite morphogenesis|Wnt receptor signaling pathway	cytoskeleton|nucleus|recycling endosome	ATP binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			ovary(4)|large_intestine(1)	5	all_cancers(22;2.55e-19)|all_lung(20;2.22e-14)|Ovarian(172;0.00197)|Breast(254;0.122)		LUSC - Lung squamous cell carcinoma(14;3.57e-14)|Lung(28;9.39e-14)			TGATTCCTCATCCTCTTCATC	0.478000													5	18	---	---	---	---	0	0	1	0	0
LIN54	132660	broad.mit.edu	37	4	83857237	83857237	+	Missense_Mutation	SNP	G	C	C			TCGA-BJ-A3PU-01A-11D-A21Z-08	TCGA-BJ-A3PU-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba44b965-4879-47b7-8501-a0c2e28ed95d	bb3c6413-0dd0-419e-b1a7-6af329df63c7	g.chr4:83857237G>C	uc003hnx.3	-	11	2120	c.1742C>G	c.(1741-1743)CCT>CGT	p.P581R	LIN54_uc003hnz.3_Missense_Mutation_p.P360R|LIN54_uc003hny.3_Missense_Mutation_p.P180R|LIN54_uc010ijt.2_Missense_Mutation_p.P492R|LIN54_uc010iju.2_Missense_Mutation_p.P180R|LIN54_uc010ijv.2_Missense_Mutation_p.P360R	NM_194282	NP_919258	Q6MZP7	LIN54_HUMAN	lin-54 homolog isoform a	581					cell cycle|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding				0		Hepatocellular(203;0.114)				CCCTATCTTAGGCTTAAAGGC	0.378000													17	94	---	---	---	---	0	0	1	0	0
DMGDH	29958	broad.mit.edu	37	5	78322341	78322341	+	Missense_Mutation	SNP	A	C	C			TCGA-BJ-A3PU-01A-11D-A21Z-08	TCGA-BJ-A3PU-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba44b965-4879-47b7-8501-a0c2e28ed95d	bb3c6413-0dd0-419e-b1a7-6af329df63c7	g.chr5:78322341A>C	uc003kfs.2	-	13	2102	c.2096T>G	c.(2095-2097)ATG>AGG	p.M699R	DMGDH_uc011cte.1_Missense_Mutation_p.M549R|DMGDH_uc011ctf.1_Missense_Mutation_p.M498R|DMGDH_uc011ctg.1_Missense_Mutation_p.M319R	NM_013391	NP_037523	Q9UI17	M2GD_HUMAN	dimethylglycine dehydrogenase precursor	699					choline metabolic process|glycine catabolic process	mitochondrial matrix	aminomethyltransferase activity|dimethylglycine dehydrogenase activity|electron carrier activity			ovary(2)|liver(1)|skin(1)	4		all_lung(232;0.000638)|Lung NSC(167;0.00173)|Ovarian(174;0.0262)|Prostate(461;0.192)		OV - Ovarian serous cystadenocarcinoma(54;6.52e-45)|Epithelial(54;5.96e-40)|all cancers(79;3.56e-35)		GCCTGCATTCATGATAGCGTC	0.512000													4	96	---	---	---	---	0	0	1	0	0
PCDHB6	56130	broad.mit.edu	37	5	140530372	140530372	+	Missense_Mutation	SNP	C	A	A			TCGA-BJ-A3PU-01A-11D-A21Z-08	TCGA-BJ-A3PU-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba44b965-4879-47b7-8501-a0c2e28ed95d	bb3c6413-0dd0-419e-b1a7-6af329df63c7	g.chr5:140530372C>A	uc003lir.2	+	1	534	c.534C>A	c.(532-534)CAC>CAA	p.H178Q	PCDHB6_uc011dah.1_Missense_Mutation_p.H42Q	NM_018939	NP_061762	Q9Y5E3	PCDB6_HUMAN	protocadherin beta 6 precursor	178	Cadherin 2.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CTCACTTCCACGTTCTCACCC	0.547000													12	357	---	---	---	---	0.000151284	0.000151284	1	1	0
GARS	2617	broad.mit.edu	37	7	30634596	30634596	+	Missense_Mutation	SNP	T	C	C			TCGA-BJ-A3PU-01A-11D-A21Z-08	TCGA-BJ-A3PU-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba44b965-4879-47b7-8501-a0c2e28ed95d	bb3c6413-0dd0-419e-b1a7-6af329df63c7	g.chr7:30634596T>C	uc003tbm.2	+	1	416	c.59T>C	c.(58-60)CTG>CCG	p.L20P	uc003tbj.2_5'Flank|uc003tbl.3_5'Flank|uc010kvv.2_5'Flank	NM_002047	NP_002038	P41250	SYG_HUMAN	glycyl-tRNA synthetase	20					cell death|diadenosine tetraphosphate biosynthetic process|glycyl-tRNA aminoacylation	cytosol|mitochondrial matrix|soluble fraction	ATP binding|glycine-tRNA ligase activity|protein dimerization activity			ovary(1)	1					Glycine(DB00145)	CTGCTGCTGCTGCCGCCCCGG	0.736000													3	20	---	---	---	---	0	0	1	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-BJ-A3PU-01A-11D-A21Z-08	TCGA-BJ-A3PU-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba44b965-4879-47b7-8501-a0c2e28ed95d	bb3c6413-0dd0-419e-b1a7-6af329df63c7	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				38	65	---	---	---	---	0	0	1	0	0
MYOM2	9172	broad.mit.edu	37	8	2040223	2040223	+	Silent	SNP	G	A	A			TCGA-BJ-A3PU-01A-11D-A21Z-08	TCGA-BJ-A3PU-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba44b965-4879-47b7-8501-a0c2e28ed95d	bb3c6413-0dd0-419e-b1a7-6af329df63c7	g.chr8:2040223G>A	uc003wpx.3	+	16	2016	c.1878G>A	c.(1876-1878)ACG>ACA	p.T626T	MYOM2_uc011kwi.1_Silent_p.T51T	NM_003970	NP_003961	P54296	MYOM2_HUMAN	myomesin 2	626	Fibronectin type-III 3.				muscle contraction	myosin filament	structural constituent of muscle			ovary(4)|central_nervous_system(1)|skin(1)	6		Ovarian(12;0.0572)|Colorectal(14;0.0844)|Hepatocellular(245;0.217)		BRCA - Breast invasive adenocarcinoma(11;1.85e-05)|Colorectal(4;0.0101)|READ - Rectum adenocarcinoma(4;0.148)|COAD - Colon adenocarcinoma(4;0.179)		ACACCAAGACGTCGGTGGTGG	0.572000													6	218	---	---	---	---	0	0	1	0	0
PSD3	23362	broad.mit.edu	37	8	18513180	18513180	+	Missense_Mutation	SNP	T	C	C			TCGA-BJ-A3PU-01A-11D-A21Z-08	TCGA-BJ-A3PU-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba44b965-4879-47b7-8501-a0c2e28ed95d	bb3c6413-0dd0-419e-b1a7-6af329df63c7	g.chr8:18513180T>C	uc003wza.2	-	10	2291	c.2188A>G	c.(2188-2190)ATC>GTC	p.I730V	PSD3_uc003wyx.3_Missense_Mutation_p.I59V|PSD3_uc003wyy.2_Missense_Mutation_p.I196V|PSD3_uc003wyz.2_Missense_Mutation_p.I31V	NM_015310	NP_056125	Q9NYI0	PSD3_HUMAN	ADP-ribosylation factor guanine nucleotide	731	SEC7.				regulation of ARF protein signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	ARF guanyl-nucleotide exchange factor activity			ovary(3)	3				Colorectal(111;0.0281)|READ - Rectum adenocarcinoma(644;0.183)		TCATTCTTGATTGAGTTGTAC	0.373000													3	88	---	---	---	---	0	0	1	0	0
SPTAN1	6709	broad.mit.edu	37	9	131355261	131355261	+	Splice_Site	SNP	G	A	A			TCGA-BJ-A3PU-01A-11D-A21Z-08	TCGA-BJ-A3PU-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba44b965-4879-47b7-8501-a0c2e28ed95d	bb3c6413-0dd0-419e-b1a7-6af329df63c7	g.chr9:131355261G>A	uc004bvl.3	+	23	3269	c.3156_splice	c.e23-1	p.Q1052_splice	SPTAN1_uc011mbg.1_Intron|SPTAN1_uc011mbh.1_Splice_Site_p.Q1064_splice|SPTAN1_uc004bvm.3_Splice_Site_p.Q1052_splice|SPTAN1_uc004bvn.3_Intron	NM_003127	NP_003118	Q13813	SPTA2_HUMAN	spectrin, alpha, non-erythrocytic 1						actin filament capping|axon guidance|cellular component disassembly involved in apoptosis	cytosol|intracellular membrane-bounded organelle|membrane fraction|microtubule cytoskeleton|spectrin	actin binding|calcium ion binding|calmodulin binding|structural constituent of cytoskeleton			breast(5)|ovary(4)|pancreas(1)	10						CCTCTGTGCAGGACACGCATA	0.532000													3	13	---	---	---	---	0	0	1	0	0
RXRA	6256	broad.mit.edu	37	9	137323832	137323832	+	Silent	SNP	C	T	T			TCGA-BJ-A3PU-01A-11D-A21Z-08	TCGA-BJ-A3PU-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba44b965-4879-47b7-8501-a0c2e28ed95d	bb3c6413-0dd0-419e-b1a7-6af329df63c7	g.chr9:137323832C>T	uc004cfb.2	+	8	1287	c.1125C>T	c.(1123-1125)CTC>CTT	p.L375L	RXRA_uc004cfc.1_Silent_p.L278L	NM_002957	NP_002948	P19793	RXRA_HUMAN	retinoid X receptor, alpha	375	Ligand-binding.				cellular lipid metabolic process|cholesterol metabolic process|interspecies interaction between organisms|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to retinoic acid|vitamin metabolic process	nuclear chromatin|nucleoplasm	enzyme binding|ligand-regulated transcription factor activity|protein heterodimerization activity|retinoic acid-responsive element binding|retinoid-X receptor activity|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|transcription coactivator activity|vitamin D receptor binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2				OV - Ovarian serous cystadenocarcinoma(145;4.66e-08)|Epithelial(140;6.72e-08)|all cancers(34;2.22e-07)	Acitretin(DB00459)|Adapalene(DB00210)|Alitretinoin(DB00523)|Etretinate(DB00926)	CCATCGTCCTCTTTAACCCTG	0.627000													22	24	---	---	---	---	0	0	1	0	0
TUBBP5	643224	broad.mit.edu	37	9	141071110	141071110	+	Silent	SNP	A	G	G			TCGA-BJ-A3PU-01A-11D-A21Z-08	TCGA-BJ-A3PU-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba44b965-4879-47b7-8501-a0c2e28ed95d	bb3c6413-0dd0-419e-b1a7-6af329df63c7	g.chr9:141071110A>G	uc004com.2	+	4	774	c.513A>G	c.(511-513)CCA>CCG	p.P171P	TUBBP5_uc010ncq.2_3'UTR					RecName: Full=Putative tubulin beta-4q chain;												0						TGCGCTTCCCAGGCCAGCTGA	0.597000													4	38	---	---	---	---	0	0	1	0	0
MID2	11043	broad.mit.edu	37	X	107148766	107148766	+	Missense_Mutation	SNP	G	A	A			TCGA-BJ-A3PU-01A-11D-A21Z-08	TCGA-BJ-A3PU-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba44b965-4879-47b7-8501-a0c2e28ed95d	bb3c6413-0dd0-419e-b1a7-6af329df63c7	g.chrX:107148766G>A	uc004enl.2	+	5	1556	c.983G>A	c.(982-984)CGG>CAG	p.R328Q	MID2_uc004enk.2_Missense_Mutation_p.R328Q	NM_012216	NP_036348	Q9UJV3	TRIM1_HUMAN	midline 2 isoform 1	328						centrosome|microtubule	ligase activity|zinc ion binding			ovary(1)	1						TGTCTTGAACGGTCAACAGTC	0.403000													9	115	---	---	---	---	0	0	1	0	0
BGN	633	broad.mit.edu	37	X	152772037	152772037	+	Missense_Mutation	SNP	G	A	A			TCGA-BJ-A3PU-01A-11D-A21Z-08	TCGA-BJ-A3PU-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba44b965-4879-47b7-8501-a0c2e28ed95d	bb3c6413-0dd0-419e-b1a7-6af329df63c7	g.chrX:152772037G>A	uc004fhr.1	+	5	788	c.616G>A	c.(616-618)GAT>AAT	p.D206N	BGN_uc004fhq.1_RNA	NM_001711	NP_001702	P21810	PGS1_HUMAN	biglycan preproprotein	206	LRR 6.					proteinaceous extracellular matrix|transport vesicle	extracellular matrix structural constituent			breast(2)	2	all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					TGGAGCCTTCGATGGCCTGAA	0.612000													12	63	---	---	---	---	0	0	1	0	0
FAM76A	199870	broad.mit.edu	37	1	28087061	28087062	+	Frame_Shift_Del	DEL	CA	-	-			TCGA-BJ-A3PU-01A-11D-A21Z-08	TCGA-BJ-A3PU-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba44b965-4879-47b7-8501-a0c2e28ed95d	bb3c6413-0dd0-419e-b1a7-6af329df63c7	g.chr1:28087061_28087062delCA	uc001boq.2	+	9	995_996	c.893_894delCA	c.(892-894)TCAfs	p.S298fs	FAM76A_uc001bor.2_Frame_Shift_Del_p.S332fs|FAM76A_uc001bos.2_Frame_Shift_Del_p.S303fs|FAM76A_uc001bot.2_Frame_Shift_Del_p.S269fs|FAM76A_uc010ofm.1_Frame_Shift_Del_p.S218fs	NM_152660	NP_689873	Q8TAV0	FA76A_HUMAN	hypothetical protein LOC199870 isoform 3	298	Potential.										0		Colorectal(325;0.000147)|all_lung(284;0.00181)|Lung NSC(340;0.00278)|Renal(390;0.00357)|Breast(348;0.0115)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0545)|all_neural(195;0.0966)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0429)|OV - Ovarian serous cystadenocarcinoma(117;3.52e-24)|Colorectal(126;3.23e-08)|COAD - Colon adenocarcinoma(152;1.75e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00253)|KIRC - Kidney renal clear cell carcinoma(1967;0.00292)|STAD - Stomach adenocarcinoma(196;0.00308)|READ - Rectum adenocarcinoma(331;0.0649)		AGCAAGAAGTCAGAGAAGTCAG	0.480													19	17	---	---	---	---					
Unknown	0	broad.mit.edu	37	1	121357969	121357969	+	IGR	DEL	G	-	-			TCGA-BJ-A3PU-01A-11D-A21Z-08	TCGA-BJ-A3PU-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba44b965-4879-47b7-8501-a0c2e28ed95d	bb3c6413-0dd0-419e-b1a7-6af329df63c7	g.chr1:121357969delG								LOC647121 (44283 upstream) : None (None downstream)																							tccacttgcaggtcctccaac	0.000													10	103	---	---	---	---					
Unknown	0	broad.mit.edu	37	1	121484332	121484332	+	IGR	DEL	A	-	-	rs4897882		TCGA-BJ-A3PU-01A-11D-A21Z-08	TCGA-BJ-A3PU-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba44b965-4879-47b7-8501-a0c2e28ed95d	bb3c6413-0dd0-419e-b1a7-6af329df63c7	g.chr1:121484332delA								LOC647121 (170646 upstream) : None (None downstream)																							ctctgtttgtaaagtctgcaa	0.000													8	302	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42383716	42383717	+	IGR	INS	-	G	G	rs145968937		TCGA-BJ-A3PU-01A-11D-A21Z-08	TCGA-BJ-A3PU-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba44b965-4879-47b7-8501-a0c2e28ed95d	bb3c6413-0dd0-419e-b1a7-6af329df63c7	g.chr10:42383716_42383717insG								None (None upstream) : LOC441666 (443598 downstream)																							tggaatcaaaataaccatcatc	0.000													13	122	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42385655	42385655	+	IGR	DEL	A	-	-			TCGA-BJ-A3PU-01A-11D-A21Z-08	TCGA-BJ-A3PU-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba44b965-4879-47b7-8501-a0c2e28ed95d	bb3c6413-0dd0-419e-b1a7-6af329df63c7	g.chr10:42385655delA								None (None upstream) : LOC441666 (441660 downstream)																							aatggaaatgaaaggagtcat	0.000													8	484	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42385707	42385722	+	IGR	DEL	AATGGAATCATCATTA	-	-	rs33914712		TCGA-BJ-A3PU-01A-11D-A21Z-08	TCGA-BJ-A3PU-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba44b965-4879-47b7-8501-a0c2e28ed95d	bb3c6413-0dd0-419e-b1a7-6af329df63c7	g.chr10:42385707_42385722delAATGGAATCATCATTA								None (None upstream) : LOC441666 (441593 downstream)																							aatggaatcgaatggaatcatcattaaatggaatca	0.042													25	209	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42391470	42391470	+	IGR	DEL	T	-	-	rs28839468		TCGA-BJ-A3PU-01A-11D-A21Z-08	TCGA-BJ-A3PU-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba44b965-4879-47b7-8501-a0c2e28ed95d	bb3c6413-0dd0-419e-b1a7-6af329df63c7	g.chr10:42391470delT								None (None upstream) : LOC441666 (435845 downstream)																							tcaaacggaatcaaacggaat	0.000													7	688	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42396183	42396184	+	IGR	INS	-	A	A	rs150255523		TCGA-BJ-A3PU-01A-11D-A21Z-08	TCGA-BJ-A3PU-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba44b965-4879-47b7-8501-a0c2e28ed95d	bb3c6413-0dd0-419e-b1a7-6af329df63c7	g.chr10:42396183_42396184insA								None (None upstream) : LOC441666 (431131 downstream)																							gtaatcatcatcaaatggaatc	0.000													7	2888	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42400228	42400228	+	IGR	DEL	A	-	-	rs66504919		TCGA-BJ-A3PU-01A-11D-A21Z-08	TCGA-BJ-A3PU-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba44b965-4879-47b7-8501-a0c2e28ed95d	bb3c6413-0dd0-419e-b1a7-6af329df63c7	g.chr10:42400228delA								None (None upstream) : LOC441666 (427087 downstream)																							ccaatggtagaaaaggaaata	0.000													8	252	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42400586	42400586	+	IGR	DEL	A	-	-	rs74207080		TCGA-BJ-A3PU-01A-11D-A21Z-08	TCGA-BJ-A3PU-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba44b965-4879-47b7-8501-a0c2e28ed95d	bb3c6413-0dd0-419e-b1a7-6af329df63c7	g.chr10:42400586delA								None (None upstream) : LOC441666 (426729 downstream)																							atcttcgtataaaaactagac	0.000													8	961	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42529391	42529391	+	IGR	DEL	G	-	-	rs71210893		TCGA-BJ-A3PU-01A-11D-A21Z-08	TCGA-BJ-A3PU-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba44b965-4879-47b7-8501-a0c2e28ed95d	bb3c6413-0dd0-419e-b1a7-6af329df63c7	g.chr10:42529391delG								None (None upstream) : LOC441666 (297924 downstream)																							attatatgaagaaatcccgtt	0.000													12	400	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42597165	42597165	+	IGR	DEL	G	-	-			TCGA-BJ-A3PU-01A-11D-A21Z-08	TCGA-BJ-A3PU-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba44b965-4879-47b7-8501-a0c2e28ed95d	bb3c6413-0dd0-419e-b1a7-6af329df63c7	g.chr10:42597165delG								None (None upstream) : LOC441666 (230150 downstream)																							ggaatcgaatggaatcatcat	0.020													12	2138	---	---	---	---					
Unknown	0	broad.mit.edu	37	11	64011615	64011616	+	IGR	DEL	TG	-	-	rs150253900		TCGA-BJ-A3PU-01A-11D-A21Z-08	TCGA-BJ-A3PU-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba44b965-4879-47b7-8501-a0c2e28ed95d	bb3c6413-0dd0-419e-b1a7-6af329df63c7	g.chr11:64011615_64011616delTG								FKBP2 (9 upstream) : PPP1R14B (337 downstream)																							GGAGTAAGCCTGTGTGTGTTTG	0.480													7	4	---	---	---	---					
TMC7	79905	broad.mit.edu	37	16	19058506	19058506	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BJ-A3PU-01A-11D-A21Z-08	TCGA-BJ-A3PU-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba44b965-4879-47b7-8501-a0c2e28ed95d	bb3c6413-0dd0-419e-b1a7-6af329df63c7	g.chr16:19058506delT	uc002dfq.2	+	12	1805	c.1675delT	c.(1675-1677)TTTfs	p.F559fs	TMC7_uc002dfp.2_Frame_Shift_Del_p.F559fs|TMC7_uc010vap.1_Frame_Shift_Del_p.F449fs	NM_024847	NP_079123	Q7Z402	TMC7_HUMAN	transmembrane channel-like 7 isoform a	559	Helical; (Potential).					integral to membrane				skin(2)|ovary(1)	3						GATCGGAGCCTTTTTCTCACC	0.498													7	752	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	46386581	46386596	+	IGR	DEL	ATGATTCCCTTCGACA	-	-	rs140657305		TCGA-BJ-A3PU-01A-11D-A21Z-08	TCGA-BJ-A3PU-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba44b965-4879-47b7-8501-a0c2e28ed95d	bb3c6413-0dd0-419e-b1a7-6af329df63c7	g.chr16:46386581_46386596delATGATTCCCTTCGACA								None (None upstream) : ANKRD26P1 (116653 downstream)																							atgattccatatgattcccttcgacaatgattccat	0.000													11	187	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	46388420	46388422	+	IGR	DEL	GAT	-	-	rs28778314		TCGA-BJ-A3PU-01A-11D-A21Z-08	TCGA-BJ-A3PU-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba44b965-4879-47b7-8501-a0c2e28ed95d	bb3c6413-0dd0-419e-b1a7-6af329df63c7	g.chr16:46388420_46388422delGAT								None (None upstream) : ANKRD26P1 (114827 downstream)																							aattccattcgatgatgattccc	0.000													8	456	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	46392982	46393030	+	IGR	DEL	GATGATTCCATTAGATTCCATTTGATGATTCCATTCGATTCCATGCGAC	-	-	rs139440462		TCGA-BJ-A3PU-01A-11D-A21Z-08	TCGA-BJ-A3PU-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba44b965-4879-47b7-8501-a0c2e28ed95d	bb3c6413-0dd0-419e-b1a7-6af329df63c7	g.chr16:46392982_46393030delGATGATTCCATTAGATTCCATTTGATGATTCCATTCGATTCCATGCGAC								None (None upstream) : ANKRD26P1 (110219 downstream)																							tccatttgatgatgattccattagattccatttgatgattccattcgattccatgcgacgatgattcca	0.000													19	165	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	46394988	46394990	+	IGR	DEL	ATG	-	-	rs144015128		TCGA-BJ-A3PU-01A-11D-A21Z-08	TCGA-BJ-A3PU-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba44b965-4879-47b7-8501-a0c2e28ed95d	bb3c6413-0dd0-419e-b1a7-6af329df63c7	g.chr16:46394988_46394990delATG								None (None upstream) : ANKRD26P1 (108259 downstream)																							tcgattccatatgatgatgactc	0.000													25	324	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	46403697	46403698	+	IGR	INS	-	G	G	rs142975115		TCGA-BJ-A3PU-01A-11D-A21Z-08	TCGA-BJ-A3PU-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba44b965-4879-47b7-8501-a0c2e28ed95d	bb3c6413-0dd0-419e-b1a7-6af329df63c7	g.chr16:46403697_46403698insG								None (None upstream) : ANKRD26P1 (99551 downstream)																							tttcattcgatgatgattccat	0.000													16	1566	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	46406908	46406910	+	IGR	DEL	ATG	-	-	rs142002187		TCGA-BJ-A3PU-01A-11D-A21Z-08	TCGA-BJ-A3PU-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba44b965-4879-47b7-8501-a0c2e28ed95d	bb3c6413-0dd0-419e-b1a7-6af329df63c7	g.chr16:46406908_46406910delATG								None (None upstream) : ANKRD26P1 (96339 downstream)																							tcgattccatatgatgatgactc	0.000													33	489	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	46409653	46409656	+	IGR	DEL	TTCA	-	-	rs112162925		TCGA-BJ-A3PU-01A-11D-A21Z-08	TCGA-BJ-A3PU-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba44b965-4879-47b7-8501-a0c2e28ed95d	bb3c6413-0dd0-419e-b1a7-6af329df63c7	g.chr16:46409653_46409656delTTCA								None (None upstream) : ANKRD26P1 (93593 downstream)																							tccattcgatttcattcaatgatt	0.000													7	36	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	46432692	46432693	+	IGR	INS	-	GGAAA	GGAAA	rs60106779		TCGA-BJ-A3PU-01A-11D-A21Z-08	TCGA-BJ-A3PU-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba44b965-4879-47b7-8501-a0c2e28ed95d	bb3c6413-0dd0-419e-b1a7-6af329df63c7	g.chr16:46432692_46432693insGGAAA								None (None upstream) : ANKRD26P1 (70556 downstream)																							tggaatggaatcatcatcgaat	0.000													8	373	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	49511613	49511615	+	IGR	DEL	GAA	-	-			TCGA-BJ-A3PU-01A-11D-A21Z-08	TCGA-BJ-A3PU-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba44b965-4879-47b7-8501-a0c2e28ed95d	bb3c6413-0dd0-419e-b1a7-6af329df63c7	g.chr16:49511613_49511615delGAA								C16orf78 (78296 upstream) : ZNF423 (12907 downstream)																							ggaagaacaggaagaagaagaag	0.000													4	2	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	21549760	21549760	+	IGR	DEL	G	-	-	rs112169839		TCGA-BJ-A3PU-01A-11D-A21Z-08	TCGA-BJ-A3PU-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba44b965-4879-47b7-8501-a0c2e28ed95d	bb3c6413-0dd0-419e-b1a7-6af329df63c7	g.chr17:21549760delG								C17orf51 (72029 upstream) : FAM27L (275610 downstream)																							CCTTCTGGCAGGGGTGCACAG	0.522													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	22253249	22253249	+	IGR	DEL	C	-	-	rs140540869		TCGA-BJ-A3PU-01A-11D-A21Z-08	TCGA-BJ-A3PU-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba44b965-4879-47b7-8501-a0c2e28ed95d	bb3c6413-0dd0-419e-b1a7-6af329df63c7	g.chr17:22253249delC								FLJ36000 (340179 upstream) : None (None downstream)																							ttgaacctttctttgatagtt	0.000													8	1024	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	27732326	27732329	+	IGR	DEL	TGTT	-	-	rs74211006		TCGA-BJ-A3PU-01A-11D-A21Z-08	TCGA-BJ-A3PU-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba44b965-4879-47b7-8501-a0c2e28ed95d	bb3c6413-0dd0-419e-b1a7-6af329df63c7	g.chr19:27732326_27732329delTGTT								None (None upstream) : LOC148189 (549073 downstream)																							ggaaacactctgtttgtaaaatct	0.000													11	326	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	27733247	27733247	+	IGR	DEL	A	-	-			TCGA-BJ-A3PU-01A-11D-A21Z-08	TCGA-BJ-A3PU-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba44b965-4879-47b7-8501-a0c2e28ed95d	bb3c6413-0dd0-419e-b1a7-6af329df63c7	g.chr19:27733247delA								None (None upstream) : LOC148189 (548155 downstream)																							aactagacagaatcattctca	0.000													10	657	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	27736453	27736453	+	IGR	DEL	T	-	-	rs4567863		TCGA-BJ-A3PU-01A-11D-A21Z-08	TCGA-BJ-A3PU-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba44b965-4879-47b7-8501-a0c2e28ed95d	bb3c6413-0dd0-419e-b1a7-6af329df63c7	g.chr19:27736453delT								None (None upstream) : LOC148189 (544949 downstream)																							tggaaacgggtttttttcttg	0.000													7	554	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	147298655	147298656	+	IGR	INS	-	G	G	rs116159053	by1000genomes	TCGA-BJ-A3PU-01A-11D-A21Z-08	TCGA-BJ-A3PU-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba44b965-4879-47b7-8501-a0c2e28ed95d	bb3c6413-0dd0-419e-b1a7-6af329df63c7	g.chr2:147298655_147298656insG								None (None upstream) : PABPC1P2 (45969 downstream)																							tggGGCGGGGTGGGGGGGGGCA	0.168													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	3	194711994	194711995	+	IGR	INS	-	CTA	CTA	rs142616777	by1000genomes	TCGA-BJ-A3PU-01A-11D-A21Z-08	TCGA-BJ-A3PU-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba44b965-4879-47b7-8501-a0c2e28ed95d	bb3c6413-0dd0-419e-b1a7-6af329df63c7	g.chr3:194711994_194711995insCTA								FAM43A (302230 upstream) : C3orf21 (77020 downstream)																							tcttcctcctcctcctcctcct	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	113606572	113606572	+	IGR	DEL	A	-	-			TCGA-BJ-A3PU-01A-11D-A21Z-08	TCGA-BJ-A3PU-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba44b965-4879-47b7-8501-a0c2e28ed95d	bb3c6413-0dd0-419e-b1a7-6af329df63c7	g.chr4:113606572delA								LARP7 (27831 upstream) : ANK2 (132667 downstream)																							TTCTTCTTCTAGTCATTGGAT	0.413													16	26	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	160132854	160132870	+	IGR	DEL	ACCACTCAGCTGCTCTG	-	-			TCGA-BJ-A3PU-01A-11D-A21Z-08	TCGA-BJ-A3PU-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba44b965-4879-47b7-8501-a0c2e28ed95d	bb3c6413-0dd0-419e-b1a7-6af329df63c7	g.chr6:160132854_160132870delACCACTCAGCTGCTCTG								SOD2 (18501 upstream) : WTAP (15259 downstream)																							ctccataaccaccactcagctgctctgaccaccataa	0.051													8	343	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	55327435	55327435	+	IGR	DEL	G	-	-			TCGA-BJ-A3PU-01A-11D-A21Z-08	TCGA-BJ-A3PU-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba44b965-4879-47b7-8501-a0c2e28ed95d	bb3c6413-0dd0-419e-b1a7-6af329df63c7	g.chr7:55327435delG								EGFR (52405 upstream) : LANCL2 (105706 downstream)																							ttttttttttGCAAAAGGTAA	0.204													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	Y	13842715	13842715	+	IGR	DEL	G	-	-			TCGA-BJ-A3PU-01A-11D-A21Z-08	TCGA-BJ-A3PU-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba44b965-4879-47b7-8501-a0c2e28ed95d	bb3c6413-0dd0-419e-b1a7-6af329df63c7	g.chrY:13842715delG								None (None upstream) : TTTY15 (931583 downstream)																							atcaacccgagtggaatggaa	0.000													7	1034	---	---	---	---					
