Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
COPB1	1315	broad.mit.edu	37	11	14520418	14520418	+	Silent	SNP	T	C	C			TCGA-CE-A3ME-01A-11D-A20C-08	TCGA-CE-A3ME-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca09e0ec-4cc2-4297-8ed5-31a6670f7e3b	0af887aa-c6b3-48e1-a9c2-9c746dededa6	g.chr11:14520418T>C	uc001mli.2	-	2	364	c.57A>G	c.(55-57)GAA>GAG	p.E19E	COPB1_uc001mlg.2_Silent_p.E19E|COPB1_uc001mlh.2_Silent_p.E19E|PSMA1_uc010rcp.1_RNA	NM_016451	NP_057535	P53618	COPB_HUMAN	coatomer protein complex, subunit beta 1	19					COPI coating of Golgi vesicle|interspecies interaction between organisms|intra-Golgi vesicle-mediated transport|intracellular protein transport|retrograde vesicle-mediated transport, Golgi to ER	COPI vesicle coat|cytosol|ER-Golgi intermediate compartment|plasma membrane	protein binding|structural molecule activity			ovary(1)|central_nervous_system(1)	2						CAGATGGTGGTTCTGAATCCA	0.313000													28	52	---	---	---	---	0	0	0.111260	0	0
SLC8A3	6547	broad.mit.edu	37	14	70634706	70634706	+	Missense_Mutation	SNP	G	A	A			TCGA-CE-A3ME-01A-11D-A20C-08	TCGA-CE-A3ME-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca09e0ec-4cc2-4297-8ed5-31a6670f7e3b	0af887aa-c6b3-48e1-a9c2-9c746dededa6	g.chr14:70634706G>A	uc001xly.2	-	2	1188	c.434C>T	c.(433-435)GCT>GTT	p.A145V	SLC8A3_uc001xlw.2_Missense_Mutation_p.A145V|SLC8A3_uc001xlx.2_Missense_Mutation_p.A145V|SLC8A3_uc001xlz.2_Missense_Mutation_p.A145V|SLC8A3_uc010ara.2_RNA	NM_183002	NP_892114	P57103	NAC3_HUMAN	solute carrier family 8 (sodium/calcium	145	Cytoplasmic (Potential).|Alpha-1.				cell communication|platelet activation	integral to membrane|plasma membrane	calcium:sodium antiporter activity|calmodulin binding			skin(3)|ovary(2)|breast(2)	7				BRCA - Breast invasive adenocarcinoma(234;0.0079)|all cancers(60;0.0102)|OV - Ovarian serous cystadenocarcinoma(108;0.0555)		TATCTCAGGAGCAGAGGAACC	0.488000													4	74	---	---	---	---	0	0	0.014758	0	0
CHRM5	1133	broad.mit.edu	37	15	34355399	34355399	+	Missense_Mutation	SNP	C	A	A			TCGA-CE-A3ME-01A-11D-A20C-08	TCGA-CE-A3ME-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca09e0ec-4cc2-4297-8ed5-31a6670f7e3b	0af887aa-c6b3-48e1-a9c2-9c746dededa6	g.chr15:34355399C>A	uc001zhk.1	+	3	1151	c.481C>A	c.(481-483)CTC>ATC	p.L161I	CHRM5_uc001zhl.1_Missense_Mutation_p.L161I	NM_012125	NP_036257	P08912	ACM5_HUMAN	cholinergic receptor, muscarinic 5	161	Helical; Name=4; (By similarity).				cell proliferation|inhibition of adenylate cyclase activity by muscarinic acetylcholine receptor signaling pathway	cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity|phosphatidylinositol phospholipase C activity			ovary(1)|central_nervous_system(1)	2		all_lung(180;1.76e-08)		all cancers(64;4.82e-17)|GBM - Glioblastoma multiforme(113;2.58e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0262)	Atropine(DB00572)|Benzquinamide(DB00767)|Cryptenamine(DB00785)|Homatropine Methylbromide(DB00725)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Olanzapine(DB00334)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Thiethylperazine(DB00372)	CTCCTTCATCCTCTGGGCCCC	0.547000													4	117	---	---	---	---	0.00024832	0.00031816	0.009096	1	0
CLPX	10845	broad.mit.edu	37	15	65459053	65459053	+	Silent	SNP	C	T	T			TCGA-CE-A3ME-01A-11D-A20C-08	TCGA-CE-A3ME-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca09e0ec-4cc2-4297-8ed5-31a6670f7e3b	0af887aa-c6b3-48e1-a9c2-9c746dededa6	g.chr15:65459053C>T	uc002aom.2	-	4	501	c.429G>A	c.(427-429)AAG>AAA	p.K143K	CLPX_uc010uiu.1_RNA|CLPX_uc010bhg.1_Silent_p.K143K	NM_006660	NP_006651	O76031	CLPX_HUMAN	ClpX caseinolytic protease X homolog precursor	143					protein folding|proteolysis involved in cellular protein catabolic process	mitochondrial endopeptidase Clp complex|mitochondrial inner membrane|mitochondrial nucleoid	ATP binding|ATPase activity|metal ion binding|peptidase activator activity|unfolded protein binding				0						TTATGCTTTTCTTTGAGTCTG	0.393000													3	110	---	---	---	---	0	0	0.115264	0	0
ST8SIA2	8128	broad.mit.edu	37	15	93007535	93007535	+	Silent	SNP	T	C	C			TCGA-CE-A3ME-01A-11D-A20C-08	TCGA-CE-A3ME-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca09e0ec-4cc2-4297-8ed5-31a6670f7e3b	0af887aa-c6b3-48e1-a9c2-9c746dededa6	g.chr15:93007535T>C	uc002bra.2	+	6	1203	c.1048T>C	c.(1048-1050)TTG>CTG	p.L350L	ST8SIA2_uc002brb.2_Silent_p.L329L	NM_006011	NP_006002	Q92186	SIA8B_HUMAN	ST8 alpha-N-acetyl-neuraminide	350	Lumenal (Potential).				axon guidance|N-glycan processing|oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	integral to Golgi membrane	alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity				0	Lung NSC(78;0.0893)|all_lung(78;0.125)		BRCA - Breast invasive adenocarcinoma(143;0.0355)|OV - Ovarian serous cystadenocarcinoma(32;0.203)			TACCATGCCCTTGGAGTTTAA	0.577000													3	172	---	---	---	---	0	0	0.009096	0	0
Unknown	0	broad.mit.edu	37	15	102300091	102300091	+	5'Flank	SNP	A	G	G			TCGA-CE-A3ME-01A-11D-A20C-08	TCGA-CE-A3ME-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca09e0ec-4cc2-4297-8ed5-31a6670f7e3b	0af887aa-c6b3-48e1-a9c2-9c746dededa6	g.chr15:102300091A>G	uc002bzk.2	-						uc002bzn.2_5'Flank|uc010uso.1_5'Flank|uc002bzs.2_5'Flank|uc010usv.1_5'Flank|uc002cam.2_RNA|uc010usx.1_5'Flank|uc002cao.2_5'Flank|uc002cap.2_5'Flank|uc002caq.2_5'Flank|uc010usz.1_5'Flank|uc010uta.1_5'Flank|uc002cas.2_5'Flank|uc002cat.1_5'Flank|uc002cau.2_5'Flank|uc010utb.1_5'Flank|uc002cav.2_5'Flank|uc002caw.2_5'Flank|uc002cax.2_5'Flank|uc010utc.1_5'Flank|uc002cay.2_5'Flank|uc002cbb.2_5'Flank|uc002cbc.1_5'Flank|uc002cbd.2_5'Flank|uc002cbe.2_5'Flank|uc002cbg.2_5'Flank|uc002cbh.2_5'Flank|uc002cbi.2_5'Flank|uc002cbk.2_5'Flank|uc002cbl.2_5'Flank|uc010utd.1_5'Flank|uc002cbm.2_5'Flank|uc002cbn.2_5'Flank|uc010ute.1_5'Flank					DQ593627																		GAAGACACTCATGGAGGAGTC	0.582000													3	21	---	---	---	---	0	0	0.029380	0	0
ABR	29	broad.mit.edu	37	17	995059	995059	+	Missense_Mutation	SNP	G	T	T			TCGA-CE-A3ME-01A-11D-A20C-08	TCGA-CE-A3ME-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca09e0ec-4cc2-4297-8ed5-31a6670f7e3b	0af887aa-c6b3-48e1-a9c2-9c746dededa6	g.chr17:995059G>T	uc002fsd.2	-	4	487	c.377C>A	c.(376-378)ACC>AAC	p.T126N	ABR_uc002fse.2_Missense_Mutation_p.T80N|ABR_uc002fsg.2_Missense_Mutation_p.T89N|ABR_uc002fsh.1_Missense_Mutation_p.T10N|ABR_uc010cjq.1_Missense_Mutation_p.T138N	NM_021962	NP_068781	Q12979	ABR_HUMAN	active breakpoint cluster region-related	126	DH.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding|Rho guanyl-nucleotide exchange factor activity			upper_aerodigestive_tract(1)	1				UCEC - Uterine corpus endometrioid carcinoma (25;0.0228)		GGGCTGGGAGGTGGTGGCGGT	0.572000													19	203	---	---	---	---	0.000295444	0.000367066	0.069288	1	0
SMTNL2	342527	broad.mit.edu	37	17	4510712	4510712	+	Missense_Mutation	SNP	G	A	A			TCGA-CE-A3ME-01A-11D-A20C-08	TCGA-CE-A3ME-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca09e0ec-4cc2-4297-8ed5-31a6670f7e3b	0af887aa-c6b3-48e1-a9c2-9c746dededa6	g.chr17:4510712G>A	uc002fyf.1	+	8	1383	c.1316G>A	c.(1315-1317)CGC>CAC	p.R439H	SMTNL2_uc002fye.2_Missense_Mutation_p.R295H	NM_001114974	NP_001108446	Q2TAL5	SMTL2_HUMAN	smoothelin-like 2 isoform 1	439	CH.										0				READ - Rectum adenocarcinoma(115;0.0325)		GTGATGGGCCGCAAGCCGGAC	0.582000													5	293	---	---	---	---	0	0	0.021553	0	0
MYH8	4626	broad.mit.edu	37	17	10318635	10318635	+	Missense_Mutation	SNP	C	T	T			TCGA-CE-A3ME-01A-11D-A20C-08	TCGA-CE-A3ME-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca09e0ec-4cc2-4297-8ed5-31a6670f7e3b	0af887aa-c6b3-48e1-a9c2-9c746dededa6	g.chr17:10318635C>T	uc002gmm.2	-	8	810	c.715G>A	c.(715-717)GTG>ATG	p.V239M	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	239	Myosin head-like.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						TCATTCCTCACAGTTTTGGCA	0.478000									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				60	85	---	---	---	---	0	0	0.139131	0	0
MED1	5469	broad.mit.edu	37	17	37563979	37563979	+	Nonsense_Mutation	SNP	T	A	A			TCGA-CE-A3ME-01A-11D-A20C-08	TCGA-CE-A3ME-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca09e0ec-4cc2-4297-8ed5-31a6670f7e3b	0af887aa-c6b3-48e1-a9c2-9c746dededa6	g.chr17:37563979T>A	uc002hrv.3	-	17	4707	c.4495A>T	c.(4495-4497)AAG>TAG	p.K1499*	MED1_uc010wee.1_Nonsense_Mutation_p.K1327*|MED1_uc002hru.2_Intron	NM_004774	NP_004765	Q15648	MED1_HUMAN	mediator complex subunit 1	1499	Lys-rich.				androgen biosynthetic process|androgen receptor signaling pathway|cellular lipid metabolic process|fat cell differentiation|positive regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transcription initiation from RNA polymerase II promoter	mediator complex	DNA binding|estrogen receptor binding|ligand-dependent nuclear receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|peroxisome proliferator activated receptor binding|receptor activity|retinoic acid receptor binding|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			lung(2)|ovary(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	8		Ovarian(249;1.78e-06)|Lung SC(565;0.0262)	Lung(15;0.0178)|LUAD - Lung adenocarcinoma(14;0.146)	UCEC - Uterine corpus endometrioid carcinoma (308;6.64e-05)|BRCA - Breast invasive adenocarcinoma(366;0.00136)|READ - Rectum adenocarcinoma(1115;0.0649)		TTTTTGTGCTTCTTATGTTTC	0.328000										HNSCC(31;0.082)			4	35	---	---	---	---	0	0	0.021553	0	0
RNF157	114804	broad.mit.edu	37	17	74163736	74163736	+	Missense_Mutation	SNP	C	T	T			TCGA-CE-A3ME-01A-11D-A20C-08	TCGA-CE-A3ME-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca09e0ec-4cc2-4297-8ed5-31a6670f7e3b	0af887aa-c6b3-48e1-a9c2-9c746dededa6	g.chr17:74163736C>T	uc002jqz.2	-	4	508	c.439G>A	c.(439-441)GCC>ACC	p.A147T	RNF157_uc002jra.2_Missense_Mutation_p.A147T	NM_052916	NP_443148	Q96PX1	RN157_HUMAN	ring finger protein 157	147							zinc ion binding			ovary(1)	1			LUSC - Lung squamous cell carcinoma(166;0.187)			TCTTACCTGGCAATACCATTC	0.483000													4	109	---	---	---	---	0	0	0.009096	0	0
CD209	30835	broad.mit.edu	37	19	7810630	7810630	+	Silent	SNP	A	G	G			TCGA-CE-A3ME-01A-11D-A20C-08	TCGA-CE-A3ME-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca09e0ec-4cc2-4297-8ed5-31a6670f7e3b	0af887aa-c6b3-48e1-a9c2-9c746dededa6	g.chr19:7810630A>G	uc002mht.2	-	4	589	c.522T>C	c.(520-522)ACT>ACC	p.T174T	CD209_uc010xju.1_Intron|CD209_uc010dvp.2_Silent_p.T150T|CD209_uc002mhr.2_Silent_p.T150T|CD209_uc002mhs.2_Silent_p.T150T|CD209_uc002mhu.2_Intron|CD209_uc010dvq.2_Silent_p.T174T|CD209_uc002mhq.2_Silent_p.T174T|CD209_uc002mhv.2_Silent_p.T150T|CD209_uc002mhx.2_Silent_p.T130T|CD209_uc002mhw.2_Intron|CD209_uc010dvr.2_Intron	NM_021155	NP_066978	Q9NNX6	CD209_HUMAN	CD209 molecule isoform 1	174	4.|Extracellular (Probable).|7 X approximate tandem repeats.				cell-cell recognition|endocytosis|heterophilic cell-cell adhesion|innate immune response|intracellular signal transduction|intracellular virion transport|leukocyte cell-cell adhesion|peptide antigen transport|viral genome replication|virion attachment to host cell surface receptor	cytoplasm|extracellular region|integral to membrane|plasma membrane	mannose binding|metal ion binding|peptide antigen binding|receptor activity|virion binding			skin(1)	1						CCTTCAGCCGAGTCAGCTCCT	0.562000													3	239	---	---	---	---	0	0	0.029380	0	0
ZNF563	147837	broad.mit.edu	37	19	12429722	12429722	+	Missense_Mutation	SNP	T	C	C			TCGA-CE-A3ME-01A-11D-A20C-08	TCGA-CE-A3ME-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca09e0ec-4cc2-4297-8ed5-31a6670f7e3b	0af887aa-c6b3-48e1-a9c2-9c746dededa6	g.chr19:12429722T>C	uc002mtp.2	-	4	1355	c.1117A>G	c.(1117-1119)ACG>GCG	p.T373A		NM_145276	NP_660319	Q8TA94	ZN563_HUMAN	zinc finger protein 563	373	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TGAGATAACGTTTTCCCACAC	0.413000													7	225	---	---	---	---	0	0	0.069234	0	0
ZNF443	10224	broad.mit.edu	37	19	12541141	12541141	+	Silent	SNP	C	T	T			TCGA-CE-A3ME-01A-11D-A20C-08	TCGA-CE-A3ME-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca09e0ec-4cc2-4297-8ed5-31a6670f7e3b	0af887aa-c6b3-48e1-a9c2-9c746dededa6	g.chr19:12541141C>T	uc002mtu.2	-	4	2043	c.1845G>A	c.(1843-1845)CCG>CCA	p.P615P		NM_005815	NP_005806	Q9Y2A4	ZN443_HUMAN	zinc finger protein 443	615					induction of apoptosis|regulation of transcription, DNA-dependent|response to stress|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)	1						TACATTCATACGGGTTCTCTC	0.403000													5	86	---	---	---	---	0	0	0.014758	0	0
MAST1	22983	broad.mit.edu	37	19	12962967	12962967	+	Silent	SNP	G	A	A			TCGA-CE-A3ME-01A-11D-A20C-08	TCGA-CE-A3ME-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca09e0ec-4cc2-4297-8ed5-31a6670f7e3b	0af887aa-c6b3-48e1-a9c2-9c746dededa6	g.chr19:12962967G>A	uc002mvm.2	+	9	1043	c.915G>A	c.(913-915)GCG>GCA	p.A305A	MAST1_uc002mvk.2_Silent_p.A301A	NM_014975	NP_055790	Q9Y2H9	MAST1_HUMAN	microtubule associated serine/threonine kinase	305					cytoskeleton organization|intracellular protein kinase cascade	cytoplasm|cytoskeleton|plasma membrane	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(3)|lung(2)|large_intestine(1)|skin(1)	7						TGCTGGAGGCGGCCGAAGGAC	0.652000													7	170	---	---	---	---	0	0	0.038147	0	0
SNRNP70	6625	broad.mit.edu	37	19	49589800	49589800	+	Silent	SNP	G	A	A			TCGA-CE-A3ME-01A-11D-A20C-08	TCGA-CE-A3ME-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca09e0ec-4cc2-4297-8ed5-31a6670f7e3b	0af887aa-c6b3-48e1-a9c2-9c746dededa6	g.chr19:49589800G>A	uc002pmk.2	+	2	568	c.129G>A	c.(127-129)CCG>CCA	p.P43P	SNRNP70_uc002pmh.1_RNA|SNRNP70_uc002pmi.1_Silent_p.P43P|SNRNP70_uc002pml.2_5'UTR|SNRNP70_uc002pmm.2_RNA	NM_003089	NP_003080	P08621	RU17_HUMAN	U1 small nuclear ribonucleoprotein 70 kDa	43					nuclear mRNA splicing, via spliceosome|regulation of RNA splicing	nucleoplasm|spliceosomal complex	nucleotide binding|protein binding|RNA binding				0						GCATTGCGCCGTACATTCGAG	0.328000													6	429	---	---	---	---	0	0	0.029380	0	0
ZNF845	91664	broad.mit.edu	37	19	53855196	53855196	+	Missense_Mutation	SNP	T	C	C			TCGA-CE-A3ME-01A-11D-A20C-08	TCGA-CE-A3ME-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca09e0ec-4cc2-4297-8ed5-31a6670f7e3b	0af887aa-c6b3-48e1-a9c2-9c746dededa6	g.chr19:53855196T>C	uc010ydv.1	+	4	1385	c.1268T>C	c.(1267-1269)ATG>ACG	p.M423T	ZNF845_uc010ydw.1_Missense_Mutation_p.M423T	NM_138374	NP_612383	Q96IR2	ZN845_HUMAN	zinc finger protein 845	423	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TTCAGTCAGATGTCATCCCTT	0.408000													3	204	---	---	---	---	0	0	0.021553	0	0
KIDINS220	57498	broad.mit.edu	37	2	8871700	8871700	+	Missense_Mutation	SNP	T	C	C			TCGA-CE-A3ME-01A-11D-A20C-08	TCGA-CE-A3ME-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca09e0ec-4cc2-4297-8ed5-31a6670f7e3b	0af887aa-c6b3-48e1-a9c2-9c746dededa6	g.chr2:8871700T>C	uc002qzc.2	-	30	4648	c.4466A>G	c.(4465-4467)AAG>AGG	p.K1489R	KIDINS220_uc010yiv.1_Intron|KIDINS220_uc002qzd.2_Missense_Mutation_p.K1390R|KIDINS220_uc002qzb.2_Missense_Mutation_p.K343R	NM_020738	NP_065789	Q9ULH0	KDIS_HUMAN	kinase D-interacting substrate of 220 kDa	1489	Cytoplasmic (Potential).				activation of MAPKK activity|nerve growth factor receptor signaling pathway	cytosol|integral to membrane				ovary(3)|central_nervous_system(1)	4	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)					TGGGAGAAGCTTACTGCCTGA	0.463000													3	55	---	---	---	---	0	0	0.009096	0	0
LOC96610	96610	broad.mit.edu	37	22	23006961	23006961	+	RNA	SNP	C	T	T			TCGA-CE-A3ME-01A-11D-A20C-08	TCGA-CE-A3ME-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca09e0ec-4cc2-4297-8ed5-31a6670f7e3b	0af887aa-c6b3-48e1-a9c2-9c746dededa6	g.chr22:23006961C>T	uc011aim.1	+	119		c.7564C>T								Parts of antibodies, mostly variable regions.												0						GGCTCTGCTCCTCCTCACCCT	0.627000													3	9	---	---	---	---	0	0	0.115264	0	0
CABIN1	23523	broad.mit.edu	37	22	24445595	24445595	+	Missense_Mutation	SNP	G	A	A			TCGA-CE-A3ME-01A-11D-A20C-08	TCGA-CE-A3ME-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca09e0ec-4cc2-4297-8ed5-31a6670f7e3b	0af887aa-c6b3-48e1-a9c2-9c746dededa6	g.chr22:24445595G>A	uc002zzi.1	+	7	696	c.569G>A	c.(568-570)CGG>CAG	p.R190Q	CABIN1_uc002zzj.1_Missense_Mutation_p.R190Q|CABIN1_uc002zzl.1_Missense_Mutation_p.R190Q|CABIN1_uc010guk.1_Missense_Mutation_p.R145Q|CABIN1_uc002zzk.1_Missense_Mutation_p.R145Q	NM_012295	NP_036427	Q9Y6J0	CABIN_HUMAN	calcineurin binding protein 1	190					cell surface receptor linked signaling pathway|chromatin modification	nucleus	protein phosphatase inhibitor activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	5						AAGGATTGCCGGTACAGCAAA	0.502000													4	168	---	---	---	---	0	0	0.009096	0	0
C3orf71	646450	broad.mit.edu	37	3	48955844	48955844	+	Missense_Mutation	SNP	C	A	A			TCGA-CE-A3ME-01A-11D-A20C-08	TCGA-CE-A3ME-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca09e0ec-4cc2-4297-8ed5-31a6670f7e3b	0af887aa-c6b3-48e1-a9c2-9c746dededa6	g.chr3:48955844C>A	uc010hkk.1	-	1	975	c.739G>T	c.(739-741)GTT>TTT	p.V247F	ARIH2_uc003cvb.2_5'Flank|ARIH2_uc003cvc.2_5'Flank	NM_001123040	NP_001116512	Q8N7S6	CC071_HUMAN	hypothetical protein LOC646450	247						integral to membrane					0						GCGCGGCGAACGAGGCCTCGG	0.592000													5	119	---	---	---	---	1.024e-07	1.35432e-07	0.014758	1	0
SPATA18	132671	broad.mit.edu	37	4	52945025	52945025	+	Missense_Mutation	SNP	A	T	T			TCGA-CE-A3ME-01A-11D-A20C-08	TCGA-CE-A3ME-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca09e0ec-4cc2-4297-8ed5-31a6670f7e3b	0af887aa-c6b3-48e1-a9c2-9c746dededa6	g.chr4:52945025A>T	uc003gzl.2	+	8	1423	c.1145A>T	c.(1144-1146)CAT>CTT	p.H382L	SPATA18_uc010igl.1_RNA|SPATA18_uc011bzq.1_Missense_Mutation_p.H350L|SPATA18_uc003gzk.1_Missense_Mutation_p.H382L	NM_145263	NP_660306	Q8TC71	MIEAP_HUMAN	spermatogenesis associated 18 homolog	382					mitochondrial protein catabolic process|mitochondrion degradation by induced vacuole formation|response to DNA damage stimulus	mitochondrial outer membrane	protein binding			ovary(2)|skin(2)	4			GBM - Glioblastoma multiforme(4;1.77e-13)|LUSC - Lung squamous cell carcinoma(32;0.00204)			GTCATTTGTCATCTTGATCTA	0.383000													7	204	---	---	---	---	0	0	0.047766	0	0
FAM13A	10144	broad.mit.edu	37	4	89912157	89912157	+	Missense_Mutation	SNP	T	C	C			TCGA-CE-A3ME-01A-11D-A20C-08	TCGA-CE-A3ME-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca09e0ec-4cc2-4297-8ed5-31a6670f7e3b	0af887aa-c6b3-48e1-a9c2-9c746dededa6	g.chr4:89912157T>C	uc003hse.1	-	4	780	c.572A>G	c.(571-573)AAT>AGT	p.N191S	FAM13A_uc003hsf.1_Intron|FAM13A_uc003hsh.1_Missense_Mutation_p.N5S|FAM13A_uc003hsi.2_Missense_Mutation_p.N191S|FAM13A_uc003hsj.2_Missense_Mutation_p.N191S	NM_014883	NP_055698	O94988	FA13A_HUMAN	family with sequence similarity 13, member A1	191	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(1)|liver(1)	2						AGTGGCGAGATTGTGAACATT	0.423000													5	141	---	---	---	---	0	0	0.029380	0	0
PDHA2	5161	broad.mit.edu	37	4	96761700	96761700	+	Silent	SNP	C	T	T			TCGA-CE-A3ME-01A-11D-A20C-08	TCGA-CE-A3ME-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca09e0ec-4cc2-4297-8ed5-31a6670f7e3b	0af887aa-c6b3-48e1-a9c2-9c746dededa6	g.chr4:96761700C>T	uc003htr.3	+	1	462	c.399C>T	c.(397-399)CTC>CTT	p.L133L		NM_005390	NP_005381	P29803	ODPAT_HUMAN	pyruvate dehydrogenase E1 alpha 2 precursor	133					glycolysis	mitochondrial matrix	pyruvate dehydrogenase (acetyl-transferring) activity			central_nervous_system(1)	1		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;1.23e-06)	NADH(DB00157)	GATCCATTCTCGCAGAGCTGA	0.517000													10	91	---	---	---	---	0	0	0.119110	0	0
STK31	56164	broad.mit.edu	37	7	23792452	23792452	+	Splice_Site	SNP	G	A	A			TCGA-CE-A3ME-01A-11D-A20C-08	TCGA-CE-A3ME-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca09e0ec-4cc2-4297-8ed5-31a6670f7e3b	0af887aa-c6b3-48e1-a9c2-9c746dededa6	g.chr7:23792452G>A	uc003sws.3	+	9	1200	c.1133_splice	c.e9+1	p.R378_splice	STK31_uc003swt.3_Splice_Site_p.R355_splice|STK31_uc011jze.1_Splice_Site_p.R378_splice|STK31_uc010kuq.2_Splice_Site_p.R355_splice	NM_031414	NP_113602	Q9BXU1	STK31_HUMAN	serine/threonine kinase 31 isoform a								ATP binding|nucleic acid binding|protein serine/threonine kinase activity			skin(3)|lung(2)|ovary(2)|stomach(2)	9						AAGAAATGAGGTAGGTAAAAG	0.303000													3	46	---	---	---	---	0	0	0.115264	0	0
ZNF727	442319	broad.mit.edu	37	7	63538777	63538777	+	Silent	SNP	G	A	A			TCGA-CE-A3ME-01A-11D-A20C-08	TCGA-CE-A3ME-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca09e0ec-4cc2-4297-8ed5-31a6670f7e3b	0af887aa-c6b3-48e1-a9c2-9c746dededa6	g.chr7:63538777G>A	uc011kdm.1	+	4	1529	c.1350G>A	c.(1348-1350)AAG>AAA	p.K450K		NM_001159522	NP_001152994	A8MUV8	ZN727_HUMAN	zinc finger protein 727	450					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CTGGAGAGAAGCCCTACAAAT	0.408000													3	23	---	---	---	---	0	0	0.115264	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-CE-A3ME-01A-11D-A20C-08	TCGA-CE-A3ME-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca09e0ec-4cc2-4297-8ed5-31a6670f7e3b	0af887aa-c6b3-48e1-a9c2-9c746dededa6	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				35	55	---	---	---	---	0	0	0.111260	0	0
COL15A1	1306	broad.mit.edu	37	9	101829274	101829274	+	Silent	SNP	A	G	G			TCGA-CE-A3ME-01A-11D-A20C-08	TCGA-CE-A3ME-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca09e0ec-4cc2-4297-8ed5-31a6670f7e3b	0af887aa-c6b3-48e1-a9c2-9c746dededa6	g.chr9:101829274A>G	uc004azb.1	+	40	3968	c.3762A>G	c.(3760-3762)TTA>TTG	p.L1254L		NM_001855	NP_001846	P39059	COFA1_HUMAN	alpha 1 type XV collagen precursor	1254	Nonhelical region 10 (NC10).				angiogenesis|cell differentiation|signal transduction	collagen type XV|extracellular space|integral to membrane	binding			ovary(6)	6		Acute lymphoblastic leukemia(62;0.0562)				GAGCATTCTTATCTTCCCATT	0.463000													4	138	---	---	---	---	0	0	0.021553	0	0
MAGEA6	4105	broad.mit.edu	37	X	151869749	151869749	+	Missense_Mutation	SNP	T	A	A			TCGA-CE-A3ME-01A-11D-A20C-08	TCGA-CE-A3ME-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca09e0ec-4cc2-4297-8ed5-31a6670f7e3b	0af887aa-c6b3-48e1-a9c2-9c746dededa6	g.chrX:151869749T>A	uc004ffq.1	+	3	633	c.439T>A	c.(439-441)TTT>ATT	p.F147I	MAGEA6_uc004ffr.1_Missense_Mutation_p.F147I|MAGEA2_uc010nto.2_Intron	NM_005363	NP_005354	P43360	MAGA6_HUMAN	melanoma antigen family A, 6	147	MAGE.						protein binding				0	Acute lymphoblastic leukemia(192;6.56e-05)					GCAGTACTTCTTTCCTGTGAT	0.527000													4	197	---	---	---	---	0	0	0.014758	0	0
L1CAM	3897	broad.mit.edu	37	X	153129444	153129444	+	Silent	SNP	G	A	A			TCGA-CE-A3ME-01A-11D-A20C-08	TCGA-CE-A3ME-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca09e0ec-4cc2-4297-8ed5-31a6670f7e3b	0af887aa-c6b3-48e1-a9c2-9c746dededa6	g.chrX:153129444G>A	uc004fjb.2	-	25	3459	c.3351C>T	c.(3349-3351)TTC>TTT	p.F1117F	L1CAM_uc004fjc.2_Silent_p.F1117F|L1CAM_uc010nuo.2_Silent_p.F1112F	NM_000425	NP_000416	P32004	L1CAM_HUMAN	L1 cell adhesion molecule isoform 1 precursor	1117	Extracellular (Potential).			GF -> WLC (in Ref. 11).	axon guidance|blood coagulation|cell death|leukocyte migration	integral to membrane				ovary(8)|central_nervous_system(1)	9	all_cancers(53;6.72e-15)|all_epithelial(53;3.19e-09)|all_lung(58;3.39e-06)|all_hematologic(71;4.25e-06)|Lung NSC(58;4.7e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					CCTCAGTGGCGAAGCCAGCAG	0.632000													3	51	---	---	---	---	0	0	0.014758	0	0
Unknown	0	broad.mit.edu	37	1	31128536	31128537	+	IGR	INS	-	ACA	ACA			TCGA-CE-A3ME-01A-11D-A20C-08	TCGA-CE-A3ME-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca09e0ec-4cc2-4297-8ed5-31a6670f7e3b	0af887aa-c6b3-48e1-a9c2-9c746dededa6	g.chr1:31128536_31128537insACA								None (None upstream) : MATN1 (55589 downstream)																							cggtggtggtggtggtggtgat	0.035													3	6	---	---	---	---					
TNR	7143	broad.mit.edu	37	1	175372615	175372615	+	Frame_Shift_Del	DEL	C	-	-			TCGA-CE-A3ME-01A-11D-A20C-08	TCGA-CE-A3ME-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca09e0ec-4cc2-4297-8ed5-31a6670f7e3b	0af887aa-c6b3-48e1-a9c2-9c746dededa6	g.chr1:175372615delC	uc001gkp.1	-	2	718	c.637delG	c.(637-639)GTGfs	p.V213fs	TNR_uc009wwu.1_Frame_Shift_Del_p.V213fs|TNR_uc010pmz.1_Frame_Shift_Del_p.V213fs	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	213	Cys-rich.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					TCCACACACACCCCCCGGCTG	0.607													7	552	---	---	---	---					
Unknown	0	broad.mit.edu	37	11	11179940	11179941	+	IGR	DEL	GT	-	-	rs1532778		TCGA-CE-A3ME-01A-11D-A20C-08	TCGA-CE-A3ME-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca09e0ec-4cc2-4297-8ed5-31a6670f7e3b	0af887aa-c6b3-48e1-a9c2-9c746dededa6	g.chr11:11179940_11179941delGT								ZBED5 (300320 upstream) : GALNTL4 (112480 downstream)																							GGGGCGGGCGGTGGGGGGGGGG	0.520													7	0	---	---	---	---					
GPR44	11251	broad.mit.edu	37	11	60620167	60620169	+	In_Frame_Del	DEL	GCG	-	-			TCGA-CE-A3ME-01A-11D-A20C-08	TCGA-CE-A3ME-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca09e0ec-4cc2-4297-8ed5-31a6670f7e3b	0af887aa-c6b3-48e1-a9c2-9c746dededa6	g.chr11:60620167_60620169delGCG	uc001nqc.2	-	2	1139_1141	c.1027_1029delCGC	c.(1027-1029)CGCdel	p.R343del		NM_004778	NP_004769	Q9Y5Y4	GPR44_HUMAN	G protein-coupled receptor 44	343	Cytoplasmic (Potential).				immune response	integral to plasma membrane	N-formyl peptide receptor activity			ovary(1)	1						TGGAGGAGGTGCGGCGGCGGCGG	0.749													2	4	---	---	---	---					
CHD9	80205	broad.mit.edu	37	16	53086893	53086895	+	5'Flank	DEL	CTC	-	-			TCGA-CE-A3ME-01A-11D-A20C-08	TCGA-CE-A3ME-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca09e0ec-4cc2-4297-8ed5-31a6670f7e3b	0af887aa-c6b3-48e1-a9c2-9c746dededa6	g.chr16:53086893_53086895delCTC	uc002egy.2	+							NM_025134	NP_079410	Q3L8U1	CHD9_HUMAN	chromodomain helicase DNA binding protein 9						cellular lipid metabolic process|chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleoplasm	ATP binding|DNA binding|helicase activity|protein binding			lung(2)|central_nervous_system(1)|breast(1)|skin(1)|ovary(1)|kidney(1)	7		all_cancers(37;0.0212)				cctgctccttctcctcctcctcc	0.030													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	55210673	55210674	+	IGR	INS	-	C	C	rs114535125	by1000genomes	TCGA-CE-A3ME-01A-11D-A20C-08	TCGA-CE-A3ME-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca09e0ec-4cc2-4297-8ed5-31a6670f7e3b	0af887aa-c6b3-48e1-a9c2-9c746dededa6	g.chr19:55210673_55210674insC								LILRB4 (30829 upstream) : LILRP2 (8927 downstream)																							TCCACCCCCGACCCCCCCCCAC	0.673													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	118372193	118372194	+	IGR	DEL	AC	-	-	rs10198944	by1000genomes	TCGA-CE-A3ME-01A-11D-A20C-08	TCGA-CE-A3ME-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca09e0ec-4cc2-4297-8ed5-31a6670f7e3b	0af887aa-c6b3-48e1-a9c2-9c746dededa6	g.chr2:118372193_118372194delAC								None (None upstream) : DDX18 (200061 downstream)																							tcatacccatacacacacacac	0.069													3	3	---	---	---	---					
ADNP	23394	broad.mit.edu	37	20	49508204	49508204	+	Frame_Shift_Del	DEL	T	-	-			TCGA-CE-A3ME-01A-11D-A20C-08	TCGA-CE-A3ME-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca09e0ec-4cc2-4297-8ed5-31a6670f7e3b	0af887aa-c6b3-48e1-a9c2-9c746dededa6	g.chr20:49508204delT	uc002xvt.1	-	5	3392	c.3047delA	c.(3046-3048)AAGfs	p.K1016fs	ADNP_uc002xvu.1_Frame_Shift_Del_p.K1016fs	NM_015339	NP_056154	Q9H2P0	ADNP_HUMAN	activity-dependent neuroprotector	1016						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2						CATGGTAGCCTTTTTTTTGGC	0.458													7	94	---	---	---	---					
Unknown	0	broad.mit.edu	37	22	42720077	42720079	+	IGR	DEL	TGG	-	-			TCGA-CE-A3ME-01A-11D-A20C-08	TCGA-CE-A3ME-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca09e0ec-4cc2-4297-8ed5-31a6670f7e3b	0af887aa-c6b3-48e1-a9c2-9c746dededa6	g.chr22:42720077_42720079delTGG								TCF20 (108632 upstream) : NFAM1 (56336 downstream)																							atggaggttatggtggtggtggt	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	5	73521631	73521634	+	IGR	DEL	CTCC	-	-	rs140887929	by1000genomes	TCGA-CE-A3ME-01A-11D-A20C-08	TCGA-CE-A3ME-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca09e0ec-4cc2-4297-8ed5-31a6670f7e3b	0af887aa-c6b3-48e1-a9c2-9c746dededa6	g.chr5:73521631_73521634delCTCC								RGNEF (284218 upstream) : ENC1 (401601 downstream)																							ccctccctttctccctccctccct	0.000													5	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	465294	465296	+	IGR	DEL	GGT	-	-	rs67983115		TCGA-CE-A3ME-01A-11D-A20C-08	TCGA-CE-A3ME-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca09e0ec-4cc2-4297-8ed5-31a6670f7e3b	0af887aa-c6b3-48e1-a9c2-9c746dededa6	g.chr6:465294_465296delGGT								IRF4 (53852 upstream) : EXOC2 (19843 downstream)																							GGGGGGGGGGGGTGGCGGGGCAG	0.581													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	132422967	132422969	+	IGR	DEL	CCT	-	-			TCGA-CE-A3ME-01A-11D-A20C-08	TCGA-CE-A3ME-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca09e0ec-4cc2-4297-8ed5-31a6670f7e3b	0af887aa-c6b3-48e1-a9c2-9c746dededa6	g.chr6:132422967_132422969delCCT								CTGF (150449 upstream) : MOXD1 (194226 downstream)																							CTAGGTTTCCcctcctcctcctc	0.379													2	4	---	---	---	---					
GRM1	2911	broad.mit.edu	37	6	146755219	146755221	+	In_Frame_Del	DEL	GAG	-	-			TCGA-CE-A3ME-01A-11D-A20C-08	TCGA-CE-A3ME-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca09e0ec-4cc2-4297-8ed5-31a6670f7e3b	0af887aa-c6b3-48e1-a9c2-9c746dededa6	g.chr6:146755219_146755221delGAG	uc010khw.1	+	9	3342_3344	c.2872_2874delGAG	c.(2872-2874)GAGdel	p.E961del	GRM1_uc010khv.1_3'UTR|GRM1_uc003qll.2_3'UTR|GRM1_uc011edz.1_3'UTR|GRM1_uc011eea.1_3'UTR	NM_000838	NP_000829	Q13255	GRM1_HUMAN	glutamate receptor, metabotropic 1 isoform alpha	961	Cytoplasmic (Potential).				synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			lung(8)|ovary(4)|central_nervous_system(3)|large_intestine(2)|breast(2)	19		Ovarian(120;0.0387)		OV - Ovarian serous cystadenocarcinoma(155;5.35e-08)|GBM - Glioblastoma multiforme(68;0.00762)	Acamprosate(DB00659)|L-Glutamic Acid(DB00142)	TTACAACGTAGAGGAGGAGGAGG	0.586													7	253	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	169069614	169069614	+	IGR	DEL	C	-	-			TCGA-CE-A3ME-01A-11D-A20C-08	TCGA-CE-A3ME-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca09e0ec-4cc2-4297-8ed5-31a6670f7e3b	0af887aa-c6b3-48e1-a9c2-9c746dededa6	g.chr6:169069614delC								SMOC2 (943 upstream) : THBS2 (546262 downstream)																							caccctgcgtcccccccactc	0.005													3	3	---	---	---	---					
ADRA1A	148	broad.mit.edu	37	8	26724308	26724308	+	5'Flank	DEL	G	-	-			TCGA-CE-A3ME-01A-11D-A20C-08	TCGA-CE-A3ME-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca09e0ec-4cc2-4297-8ed5-31a6670f7e3b	0af887aa-c6b3-48e1-a9c2-9c746dededa6	g.chr8:26724308delG	uc003xfc.1	-						ADRA1A_uc010lul.1_5'Flank|ADRA1A_uc003xfd.1_5'Flank|ADRA1A_uc003xfe.1_5'Flank|ADRA1A_uc010lum.1_5'Flank|ADRA1A_uc003xff.1_5'Flank|ADRA1A_uc003xfg.1_5'Flank|ADRA1A_uc003xfh.1_5'Flank|uc010lun.1_Intron	NM_033303	NP_150646	P35348	ADA1A_HUMAN	alpha-1A-adrenergic receptor isoform 2						activation of phospholipase C activity|aging|apoptosis|calcium ion transport into cytosol|cell-cell signaling|intracellular protein kinase cascade|negative regulation of cell proliferation|negative regulation of Rho protein signal transduction|negative regulation of synaptic transmission, GABAergic|positive regulation of action potential|positive regulation of cardiac muscle contraction|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein kinase C signaling cascade|positive regulation of vasoconstriction|response to drug|response to hormone stimulus|response to stress|smooth muscle contraction	integral to plasma membrane	alpha1-adrenergic receptor activity			breast(2)|ovary(1)|lung(1)|skin(1)	5		all_cancers(63;0.122)|Ovarian(32;2.61e-05)|all_epithelial(46;0.118)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0228)|Epithelial(17;4.92e-10)|Colorectal(74;0.0132)|READ - Rectum adenocarcinoma(644;0.115)	Alfuzosin(DB00346)|Amiodarone(DB01118)|Amphetamine(DB00182)|Benzphetamine(DB00865)|Bethanidine(DB00217)|Carvedilol(DB01136)|Dapiprazole(DB00298)|Debrisoquin(DB04840)|Dextroamphetamine(DB01576)|Doxazosin(DB00590)|Epinastine(DB00751)|Epinephrine(DB00668)|Ergotamine(DB00696)|Flupenthixol(DB00875)|Guanadrel Sulfate(DB00226)|Guanethidine(DB01170)|Labetalol(DB00598)|Lisdexamfetamine(DB01255)|Maprotiline(DB00934)|Mephentermine(DB01365)|Metaraminol(DB00610)|Methamphetamine(DB01577)|Methotrimeprazine(DB01403)|Methoxamine(DB00723)|Midodrine(DB00211)|Nefazodone(DB01149)|Nicergoline(DB00699)|Nilutamide(DB00665)|Norepinephrine(DB00368)|Norgestrel(DB00506)|Oxymetazoline(DB00935)|Perphenazine(DB00850)|Phendimetrazine(DB01579)|Phenoxybenzamine(DB00925)|Phenylephrine(DB00388)|Phenylpropanolamine(DB00397)|Prazosin(DB00457)|Promazine(DB00420)|Promethazine(DB01069)|Propericiazine(DB01608)|Propiomazine(DB00777)|Pseudoephedrine(DB00852)|Risperidone(DB00734)|Sertindole(DB06144)|Tamsulosin(DB00706)|Terazosin(DB01162)|Thioridazine(DB00679)|Tolazoline(DB00797)|Trazodone(DB00656)|Trifluoperazine(DB00831)|Ziprasidone(DB00246)	TAAGGGAATCGGGGGTGGGGT	0.552													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	8	56535417	56535417	+	IGR	DEL	C	-	-			TCGA-CE-A3ME-01A-11D-A20C-08	TCGA-CE-A3ME-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca09e0ec-4cc2-4297-8ed5-31a6670f7e3b	0af887aa-c6b3-48e1-a9c2-9c746dededa6	g.chr8:56535417delC								XKR4 (96709 upstream) : TMEM68 (115903 downstream)																							TGTGGCAAAACTTTTAACCAA	0.378													21	34	---	---	---	---					
Unknown	0	broad.mit.edu	37	X	112756387	112756389	+	IGR	DEL	TCC	-	-			TCGA-CE-A3ME-01A-11D-A20C-08	TCGA-CE-A3ME-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca09e0ec-4cc2-4297-8ed5-31a6670f7e3b	0af887aa-c6b3-48e1-a9c2-9c746dededa6	g.chrX:112756387_112756389delTCC								AMOT (672344 upstream) : None (None downstream)																							ctcctcctcttcctcctcctcct	0.044													2	4	---	---	---	---					
