Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
DOCK7	85440	broad.mit.edu	37	1	63113974	63113974	+	Missense_Mutation	SNP	G	A	A			TCGA-DE-A3KN-01A-11D-A20C-08	TCGA-DE-A3KN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	07a7c634-bd9a-4fc2-b9fe-87b060ec3d1f	1c6abcc3-1a61-441a-921d-6d06f762c1a3	g.chr1:63113974G>A	uc001daq.2	-	6	569	c.535C>T	c.(535-537)CGT>TGT	p.R179C	DOCK7_uc001dan.2_Missense_Mutation_p.R71C|DOCK7_uc001dao.2_Missense_Mutation_p.R71C|DOCK7_uc001dap.2_Missense_Mutation_p.R179C|DOCK7_uc009wah.1_Missense_Mutation_p.R179C	NM_033407	NP_212132	Q96N67	DOCK7_HUMAN	dedicator of cytokinesis 7	179					activation of Rac GTPase activity|axonogenesis|establishment of neuroblast polarity|microtubule cytoskeleton organization|positive regulation of peptidyl-serine phosphorylation	axon|basal part of cell|growth cone	GTP binding|guanyl-nucleotide exchange factor activity|Rac GTPase binding			ovary(2)	2						GACATTGAACGTCTTTTAAGG	0.299000													26	73	---	---	---	---	0	0	0.045705	0	0
ARFIP2	23647	broad.mit.edu	37	11	6499070	6499070	+	Missense_Mutation	SNP	G	C	C			TCGA-DE-A3KN-01A-11D-A20C-08	TCGA-DE-A3KN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	07a7c634-bd9a-4fc2-b9fe-87b060ec3d1f	1c6abcc3-1a61-441a-921d-6d06f762c1a3	g.chr11:6499070G>C	uc001mdk.2	-	7	885	c.748C>G	c.(748-750)CGG>GGG	p.R250G	ARFIP2_uc001mdl.2_Missense_Mutation_p.R250G|ARFIP2_uc010ral.1_Missense_Mutation_p.R212G|ARFIP2_uc010ram.1_Missense_Mutation_p.R156G|ARFIP2_uc010ran.1_Missense_Mutation_p.R283G|ARFIP2_uc001mdm.2_RNA	NM_012402	NP_036534	P53365	ARFP2_HUMAN	ADP-ribosylation factor interacting protein 2	250	AH.				actin cytoskeleton organization|cellular component movement|lamellipodium assembly|ruffle organization|small GTPase mediated signal transduction	cell cortex|plasma membrane|ruffle	GTP binding|GTP-dependent protein binding|Rac GTPase binding				0		Medulloblastoma(188;0.00263)|all_neural(188;0.026)|Breast(177;0.029)		Epithelial(150;3.41e-08)|BRCA - Breast invasive adenocarcinoma(625;0.189)		CCTGCATCCCGGGGGCCTAGA	0.572000													3	123	---	---	---	---	0	0	0.009096	0	0
LRRC55	219527	broad.mit.edu	37	11	56950058	56950058	+	Missense_Mutation	SNP	C	G	G			TCGA-DE-A3KN-01A-11D-A20C-08	TCGA-DE-A3KN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	07a7c634-bd9a-4fc2-b9fe-87b060ec3d1f	1c6abcc3-1a61-441a-921d-6d06f762c1a3	g.chr11:56950058C>G	uc001njl.1	+	1	838	c.691C>G	c.(691-693)CTG>GTG	p.L231V		NM_001005210	NP_001005210	Q6ZSA7	LRC55_HUMAN	leucine rich repeat containing 55	201						integral to membrane					0						CCTACCGGGGCTGGTGACCCT	0.642000													72	138	---	---	---	---	0	0	0.048971	0	0
CCDC15	80071	broad.mit.edu	37	11	124857495	124857495	+	Missense_Mutation	SNP	A	C	C	rs113451248		TCGA-DE-A3KN-01A-11D-A20C-08	TCGA-DE-A3KN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	07a7c634-bd9a-4fc2-b9fe-87b060ec3d1f	1c6abcc3-1a61-441a-921d-6d06f762c1a3	g.chr11:124857495A>C	uc001qbm.3	+	8	1632	c.1373A>C	c.(1372-1374)CAC>CCC	p.H458P		NM_025004	NP_079280	Q0P6D6	CCD15_HUMAN	coiled-coil domain containing 15	458						centrosome				ovary(1)|central_nervous_system(1)	2	all_hematologic(175;0.215)	Breast(109;0.00222)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.68e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0413)		CATGTTCTCCACAAAGACCAA	0.418000													4	93	---	---	---	---	0	0	0.009096	0	0
WNK1	65125	broad.mit.edu	37	12	994570	994570	+	Missense_Mutation	SNP	C	G	G			TCGA-DE-A3KN-01A-11D-A20C-08	TCGA-DE-A3KN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	07a7c634-bd9a-4fc2-b9fe-87b060ec3d1f	1c6abcc3-1a61-441a-921d-6d06f762c1a3	g.chr12:994570C>G	uc001qio.3	+	19	5107	c.4600C>G	c.(4600-4602)CAT>GAT	p.H1534D	WNK1_uc001qip.3_Missense_Mutation_p.H1287D|WNK1_uc001qir.3_Missense_Mutation_p.H707D	NM_018979	NP_061852	Q9H4A3	WNK1_HUMAN	WNK lysine deficient protein kinase 1	1534					intracellular protein kinase cascade|ion transport|neuron development	cytoplasm	ATP binding|protein binding|protein kinase inhibitor activity|protein serine/threonine kinase activity			stomach(6)|breast(6)|ovary(5)|lung(4)|large_intestine(1)|central_nervous_system(1)	23	all_cancers(10;0.00611)|all_epithelial(11;0.00825)|all_lung(10;0.0331)|Ovarian(42;0.0512)|Lung NSC(10;0.0632)		Epithelial(1;1.74e-08)|all cancers(1;7.04e-08)|OV - Ovarian serous cystadenocarcinoma(31;0.000423)|BRCA - Breast invasive adenocarcinoma(9;0.0149)|Colorectal(1;0.0197)			TAAGACATCTCATAGCAGTAC	0.483000													7	689	---	---	---	---	0	0	0.069234	0	0
SLITRK1	114798	broad.mit.edu	37	13	84455509	84455509	+	Missense_Mutation	SNP	T	C	C			TCGA-DE-A3KN-01A-11D-A20C-08	TCGA-DE-A3KN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	07a7c634-bd9a-4fc2-b9fe-87b060ec3d1f	1c6abcc3-1a61-441a-921d-6d06f762c1a3	g.chr13:84455509T>C	uc001vlk.2	-	1	1020	c.134A>G	c.(133-135)AAG>AGG	p.K45R		NM_052910	NP_443142	Q96PX8	SLIK1_HUMAN	slit and trk like 1 protein precursor	45	LRRNT.|Extracellular (Potential).					integral to membrane				ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5	Medulloblastoma(90;0.18)	Breast(118;0.212)		GBM - Glioblastoma multiforme(99;0.07)		TGTGAAGCCCTTTTTTTCACA	0.463000													3	107	---	---	---	---	0	0	0.004672	0	0
DYNC1H1	1778	broad.mit.edu	37	14	102509075	102509075	+	Missense_Mutation	SNP	G	A	A			TCGA-DE-A3KN-01A-11D-A20C-08	TCGA-DE-A3KN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	07a7c634-bd9a-4fc2-b9fe-87b060ec3d1f	1c6abcc3-1a61-441a-921d-6d06f762c1a3	g.chr14:102509075G>A	uc001yks.2	+	69	12667	c.12503G>A	c.(12502-12504)CGG>CAG	p.R4168Q		NM_001376	NP_001367	Q14204	DYHC1_HUMAN	cytoplasmic dynein 1 heavy chain 1	4168	AAA 6 (By similarity).				cytoplasmic mRNA processing body assembly|G2/M transition of mitotic cell cycle|microtubule-based movement|mitotic spindle organization|stress granule assembly|transport	centrosome|cytoplasmic dynein complex|cytosol|Golgi apparatus|microtubule	ATP binding|ATPase activity, coupled|microtubule motor activity|protein binding			ovary(7)|central_nervous_system(2)|pancreas(1)	10						CCCGTCTCACGGATATGCAAG	0.577000													35	45	---	---	---	---	0	0	0.086207	0	0
HMOX2	3163	broad.mit.edu	37	16	4558163	4558163	+	Missense_Mutation	SNP	G	C	C			TCGA-DE-A3KN-01A-11D-A20C-08	TCGA-DE-A3KN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	07a7c634-bd9a-4fc2-b9fe-87b060ec3d1f	1c6abcc3-1a61-441a-921d-6d06f762c1a3	g.chr16:4558163G>C	uc010bts.2	+	4	825	c.654G>C	c.(652-654)AGG>AGC	p.R218S	HMOX2_uc002cwr.3_Missense_Mutation_p.R218S|HMOX2_uc002cwq.3_Missense_Mutation_p.R218S|HMOX2_uc002cws.3_Missense_Mutation_p.R272S|HMOX2_uc010btt.2_Missense_Mutation_p.R218S|HMOX2_uc002cwt.2_Missense_Mutation_p.R218S	NM_001127206	NP_001120678	P30519	HMOX2_HUMAN	heme oxygenase (decyclizing) 2	218					cellular iron ion homeostasis|heme catabolic process|heme oxidation|response to hypoxia|transmembrane transport	endoplasmic reticulum membrane|microsome|plasma membrane	electron carrier activity|heme oxygenase (decyclizing) activity|metal ion binding|protein binding				0					NADH(DB00157)	CCAAAGAGAGGATCGTGGAGG	0.522000													29	65	---	---	---	---	0	0	0.037714	0	0
PLCD3	113026	broad.mit.edu	37	17	43197710	43197710	+	Silent	SNP	G	A	A			TCGA-DE-A3KN-01A-11D-A20C-08	TCGA-DE-A3KN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	07a7c634-bd9a-4fc2-b9fe-87b060ec3d1f	1c6abcc3-1a61-441a-921d-6d06f762c1a3	g.chr17:43197710G>A	uc002iib.2	-	4	780	c.666C>T	c.(664-666)TAC>TAT	p.Y222Y		NM_133373	NP_588614	Q8N3E9	PLCD3_HUMAN	phospholipase C delta 3	222	EF-hand 2.				intracellular signal transduction|lipid catabolic process	cleavage furrow|cytoplasm|membrane	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			breast(2)|lung(1)	3					Phosphatidylserine(DB00144)	GGAGGTAGGCGTACATGTCGT	0.577000													3	30	---	---	---	---	0	0	0.004672	0	0
WDR45L	56270	broad.mit.edu	37	17	80574465	80574465	+	Missense_Mutation	SNP	T	C	C			TCGA-DE-A3KN-01A-11D-A20C-08	TCGA-DE-A3KN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	07a7c634-bd9a-4fc2-b9fe-87b060ec3d1f	1c6abcc3-1a61-441a-921d-6d06f762c1a3	g.chr17:80574465T>C	uc002kfq.2	-	9	1058	c.863A>G	c.(862-864)AAG>AGG	p.K288R	WDR45L_uc002kfr.2_RNA	NM_019613	NP_062559	Q5MNZ6	WIPI3_HUMAN	WDR45-like	288					autophagy|response to starvation	organelle membrane	phosphatidylinositol-3,5-bisphosphate binding			ovary(1)	1	Breast(20;0.00106)|all_neural(118;0.0952)	all_cancers(8;0.101)|all_epithelial(8;0.198)	BRCA - Breast invasive adenocarcinoma(99;0.0262)|OV - Ovarian serous cystadenocarcinoma(97;0.0835)			AACCTGAAACTTGGAGAAACT	0.493000													3	101	---	---	---	---	0	0	0.009096	0	0
ZNF761	388561	broad.mit.edu	37	19	53958910	53958910	+	Silent	SNP	A	G	G			TCGA-DE-A3KN-01A-11D-A20C-08	TCGA-DE-A3KN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	07a7c634-bd9a-4fc2-b9fe-87b060ec3d1f	1c6abcc3-1a61-441a-921d-6d06f762c1a3	g.chr19:53958910A>G	uc010eqp.2	+	7	1607	c.1149A>G	c.(1147-1149)AAA>AAG	p.K383K	ZNF761_uc010ydy.1_Silent_p.K329K|ZNF761_uc002qbt.1_Silent_p.K329K	NM_001008401	NP_001008401	Q86XN6	ZN761_HUMAN	zinc finger protein 761	383	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(134;0.00786)		AACCCTACAAATGTAATGAGT	0.413000													4	293	---	---	---	---	0	0	0.038147	0	0
TANC1	85461	broad.mit.edu	37	2	160087162	160087162	+	Missense_Mutation	SNP	G	A	A			TCGA-DE-A3KN-01A-11D-A20C-08	TCGA-DE-A3KN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	07a7c634-bd9a-4fc2-b9fe-87b060ec3d1f	1c6abcc3-1a61-441a-921d-6d06f762c1a3	g.chr2:160087162G>A	uc002uag.2	+	27	5499	c.5225G>A	c.(5224-5226)CGC>CAC	p.R1742H	TANC1_uc010zcm.1_3'UTR|TANC1_uc010fon.2_Missense_Mutation_p.R586H	NM_033394	NP_203752	Q9C0D5	TANC1_HUMAN	tetratricopeptide repeat, ankyrin repeat and	1742						cell junction|postsynaptic density|postsynaptic membrane	binding			ovary(2)|central_nervous_system(1)	3						CCTCCAAGCCGCAGCTGGCAC	0.582000													4	150	---	---	---	---	0	0	0.014758	0	0
PLXNB1	5364	broad.mit.edu	37	3	48453906	48453906	+	Missense_Mutation	SNP	G	C	C			TCGA-DE-A3KN-01A-11D-A20C-08	TCGA-DE-A3KN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	07a7c634-bd9a-4fc2-b9fe-87b060ec3d1f	1c6abcc3-1a61-441a-921d-6d06f762c1a3	g.chr3:48453906G>C	uc003csw.2	-	26	5248	c.4978C>G	c.(4978-4980)CTC>GTC	p.L1660V	PLXNB1_uc003cst.2_Missense_Mutation_p.L110V|PLXNB1_uc003csu.2_Missense_Mutation_p.L1477V|PLXNB1_uc003csx.2_Missense_Mutation_p.L1660V	NM_002673	NP_002664	O43157	PLXB1_HUMAN	plexin B1 precursor	1660	Cytoplasmic (Potential).				axon guidance|cell migration|intracellular signal transduction|regulation of cell shape|regulation of cytoskeleton organization|regulation of small GTPase mediated signal transduction|semaphorin-plexin signaling pathway	extracellular region|integral to plasma membrane|intracellular|semaphorin receptor complex	GTPase activator activity|semaphorin receptor activity|semaphorin receptor binding			ovary(2)|pancreas(1)|breast(1)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		AGGTCACTGAGCAGAGTGCGG	0.607000													38	113	---	---	---	---	0	0	0.048971	0	0
VCAN	1462	broad.mit.edu	37	5	82816691	82816691	+	Missense_Mutation	SNP	C	G	G			TCGA-DE-A3KN-01A-11D-A20C-08	TCGA-DE-A3KN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	07a7c634-bd9a-4fc2-b9fe-87b060ec3d1f	1c6abcc3-1a61-441a-921d-6d06f762c1a3	g.chr5:82816691C>G	uc003kii.3	+	7	2922	c.2566C>G	c.(2566-2568)CTT>GTT	p.L856V	VCAN_uc003kij.3_Intron|VCAN_uc010jau.2_Missense_Mutation_p.L856V|VCAN_uc003kik.3_Intron	NM_004385	NP_004376	P13611	CSPG2_HUMAN	versican isoform 1 precursor	856	GAG-alpha (glucosaminoglycan attachment domain).				cell adhesion|cell recognition|glial cell migration	extracellular space|proteinaceous extracellular matrix	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(7)|skin(6)|lung(2)|central_nervous_system(1)	16		Lung NSC(167;0.0216)|all_lung(232;0.0251)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;2.47e-41)|Epithelial(54;2.51e-34)|all cancers(79;5.19e-29)		TGAATTTACTCTTATTCCAGA	0.408000													40	84	---	---	---	---	0	0	0.111260	0	0
KAAG1	353219	broad.mit.edu	37	6	24358038	24358038	+	Silent	SNP	C	T	T			TCGA-DE-A3KN-01A-11D-A20C-08	TCGA-DE-A3KN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	07a7c634-bd9a-4fc2-b9fe-87b060ec3d1f	1c6abcc3-1a61-441a-921d-6d06f762c1a3	g.chr6:24358038C>T	uc003ndz.1	+	1	908	c.171C>T	c.(169-171)TCC>TCT	p.S57S	DCDC2_uc003ndx.2_5'UTR|DCDC2_uc003ndy.2_5'UTR	NM_181337	NP_851854	Q9UBP8	KAAG1_HUMAN	kidney associated antigen 1	57					immune response						0						CTCCGCTGTCCCAGCGGCCTC	0.672000													5	47	---	---	---	---	0	0	0.014758	0	0
SEC63	11231	broad.mit.edu	37	6	108230223	108230223	+	Missense_Mutation	SNP	C	T	T			TCGA-DE-A3KN-01A-11D-A20C-08	TCGA-DE-A3KN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	07a7c634-bd9a-4fc2-b9fe-87b060ec3d1f	1c6abcc3-1a61-441a-921d-6d06f762c1a3	g.chr6:108230223C>T	uc003psc.3	-	8	910	c.641G>A	c.(640-642)CGC>CAC	p.R214H	SEC63_uc003psb.3_Missense_Mutation_p.R74H	NM_007214	NP_009145	Q9UGP8	SEC63_HUMAN	SEC63-like protein	214	SEC63 1.|Cytoplasmic (Potential).				protein folding|protein targeting to membrane	endoplasmic reticulum membrane|integral to membrane	heat shock protein binding|receptor activity|unfolded protein binding			ovary(1)|skin(1)	2		all_cancers(87;5.35e-06)|Acute lymphoblastic leukemia(125;2.66e-08)|all_hematologic(75;1.13e-06)|all_epithelial(87;0.00225)|Colorectal(196;0.0294)		BRCA - Breast invasive adenocarcinoma(108;0.0079)|Epithelial(106;0.0356)|all cancers(137;0.0525)|OV - Ovarian serous cystadenocarcinoma(136;0.054)		GCGTATTGAGCGATACCACCA	0.264000													3	32	---	---	---	---	0	0	0.004672	0	0
RIMS2	9699	broad.mit.edu	37	8	105261745	105261745	+	Missense_Mutation	SNP	A	G	G			TCGA-DE-A3KN-01A-11D-A20C-08	TCGA-DE-A3KN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	07a7c634-bd9a-4fc2-b9fe-87b060ec3d1f	1c6abcc3-1a61-441a-921d-6d06f762c1a3	g.chr8:105261745A>G	uc003yls.2	+	26	3915	c.3674A>G	c.(3673-3675)AAG>AGG	p.K1225R	RIMS2_uc003ylp.2_Missense_Mutation_p.K1207R|RIMS2_uc003ylw.2_Missense_Mutation_p.K1214R|RIMS2_uc003ylq.2_Missense_Mutation_p.K1021R|RIMS2_uc003ylr.2_Missense_Mutation_p.K1046R	NM_014677	NP_055492	Q9UQ26	RIMS2_HUMAN	regulating synaptic membrane exocytosis 2	1269	C2 2.				intracellular protein transport	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(6)|lung(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	15			OV - Ovarian serous cystadenocarcinoma(57;7.7e-07)|STAD - Stomach adenocarcinoma(118;0.229)			ATGGACAAAAAGGGACAGCTG	0.403000										HNSCC(12;0.0054)			3	81	---	---	---	---	0	0	0.004672	0	0
MYC	4609	broad.mit.edu	37	8	128752882	128752882	+	Missense_Mutation	SNP	T	C	C			TCGA-DE-A3KN-01A-11D-A20C-08	TCGA-DE-A3KN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	07a7c634-bd9a-4fc2-b9fe-87b060ec3d1f	1c6abcc3-1a61-441a-921d-6d06f762c1a3	g.chr8:128752882T>C	uc003ysi.2	+	3	1568	c.1043T>C	c.(1042-1044)CTG>CCG	p.L348P		NM_002467	NP_002458	P01106	MYC_HUMAN	myc proto-oncogene protein	333					branching involved in ureteric bud morphogenesis|cell cycle arrest|cell proliferation|cellular iron ion homeostasis|positive regulation of metanephric cap mesenchymal cell proliferation|positive regulation of transcription, DNA-dependent|regulation of telomere maintenance|regulation of transcription from RNA polymerase II promoter|response to drug	nucleolus|nucleoplasm	E-box binding|protein binding|sequence-specific DNA binding transcription factor activity			lung(3)|ovary(1)|central_nervous_system(1)|pancreas(1)	6	all_cancers(1;6.19e-134)|all_epithelial(1;1.75e-119)|all_lung(1;5.66e-51)|Breast(1;1.08e-22)|all_neural(1;4.45e-21)|Medulloblastoma(1;1.88e-20)|Colorectal(1;1.92e-09)|Lung SC(1;4.52e-07)|Ovarian(5;0.000122)|Esophageal squamous(12;0.000995)|Renal(1;0.0921)|Hepatocellular(40;0.108)|Myeloproliferative disorder(2;0.135)|Melanoma(291;0.185)	Myeloproliferative disorder(644;0.0255)|Ovarian(118;0.0654)|Breast(495;0.212)|Acute lymphoblastic leukemia(644;0.22)	Epithelial(1;1.63e-94)|all cancers(1;5.82e-87)|OV - Ovarian serous cystadenocarcinoma(1;2.12e-71)|BRCA - Breast invasive adenocarcinoma(1;4.3e-14)|Lung(2;0.000381)|Colorectal(2;0.0102)|LUAD - Lung adenocarcinoma(14;0.0172)|READ - Rectum adenocarcinoma(2;0.0723)|LUSC - Lung squamous cell carcinoma(258;0.151)	KIRC - Kidney renal clear cell carcinoma(542;0.248)		GTCAGAGTCCTGAGACAGATC	0.572000		3	A|T	IGK@|BCL5|BCL7A |BTG1|TRA@|IGH@	Burkitt lymphoma| amplified in other cancers|B-CLL								3	77	---	---	---	---	0	0	0.004672	0	0
Unknown	0	broad.mit.edu	37	1	89397247	89397248	+	IGR	INS	-	G	G			TCGA-DE-A3KN-01A-11D-A20C-08	TCGA-DE-A3KN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	07a7c634-bd9a-4fc2-b9fe-87b060ec3d1f	1c6abcc3-1a61-441a-921d-6d06f762c1a3	g.chr1:89397247_89397248insG								GTF2B (39946 upstream) : CCBL2 (4208 downstream)																							tcctgttgagaggggggactga	0.000													2	4	---	---	---	---					
FZD8	8325	broad.mit.edu	37	10	35930412	35930413	+	5'Flank	INS	-	G	G	rs142623421	by1000genomes	TCGA-DE-A3KN-01A-11D-A20C-08	TCGA-DE-A3KN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	07a7c634-bd9a-4fc2-b9fe-87b060ec3d1f	1c6abcc3-1a61-441a-921d-6d06f762c1a3	g.chr10:35930412_35930413insG	uc001iyz.1	-							NM_031866	NP_114072	Q9H461	FZD8_HUMAN	frizzled 8 precursor						axonogenesis|brain development|canonical Wnt receptor signaling pathway|embryo development|gonad development|T cell differentiation in thymus|vasculature development	cell projection|Golgi apparatus|integral to membrane|plasma membrane	G-protein coupled receptor activity|PDZ domain binding|Wnt receptor activity|Wnt-protein binding				0						AGAGGGGTGCCGGGGGGGGGGC	0.703													3	6	---	---	---	---					
PDZD7	79955	broad.mit.edu	37	10	102778754	102778754	+	Frame_Shift_Del	DEL	C	-	-			TCGA-DE-A3KN-01A-11D-A20C-08	TCGA-DE-A3KN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	07a7c634-bd9a-4fc2-b9fe-87b060ec3d1f	1c6abcc3-1a61-441a-921d-6d06f762c1a3	g.chr10:102778754delC	uc001kso.1	-	8	1364	c.1149delG	c.(1147-1149)TGGfs	p.W383fs	PDZD7_uc001ksn.2_Frame_Shift_Del_p.W383fs	NM_024895	NP_079171	Q9H5P4	PDZD7_HUMAN	PDZ domain containing 7	383						cilium|nucleus	protein binding			ovary(1)|breast(1)|central_nervous_system(1)	3				Epithelial(162;6.98e-09)|all cancers(201;3.55e-07)		GCACGCTGCACCAGGTCTCCA	0.741											OREG0020453	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	125014251	125014252	+	IGR	INS	-	ACA	ACA	rs141228159		TCGA-DE-A3KN-01A-11D-A20C-08	TCGA-DE-A3KN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	07a7c634-bd9a-4fc2-b9fe-87b060ec3d1f	1c6abcc3-1a61-441a-921d-6d06f762c1a3	g.chr10:125014251_125014252insACA								BUB3 (89365 upstream) : GPR26 (411619 downstream)																							ccaccaccaccaccatcatcac	0.000													3	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	11	64949149	64949150	+	Translation_Start_Site	INS	-	C	C			TCGA-DE-A3KN-01A-11D-A20C-08	TCGA-DE-A3KN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	07a7c634-bd9a-4fc2-b9fe-87b060ec3d1f	1c6abcc3-1a61-441a-921d-6d06f762c1a3	g.chr11:64949149_64949150insC	uc001ode.2	-	1					CAPN1_uc009yqd.1_Intron|CAPN1_uc001odf.1_5'Flank|CAPN1_uc001odg.1_5'Flank|CAPN1_uc010roa.1_5'Flank					full-length cDNA clone CS0DN001YA08 of Adult brain of Homo sapiens (human).																		agcccccccatccccccccgcg	0.347													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	11	74456740	74456740	+	IGR	DEL	G	-	-	rs1140927		TCGA-DE-A3KN-01A-11D-A20C-08	TCGA-DE-A3KN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	07a7c634-bd9a-4fc2-b9fe-87b060ec3d1f	1c6abcc3-1a61-441a-921d-6d06f762c1a3	g.chr11:74456740delG								CHRDL2 (14554 upstream) : RNF169 (3173 downstream)																							ttttttttttGTGAGCCAAAG	0.204													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	11	94373825	94373827	+	IGR	DEL	ACC	-	-	rs147715042		TCGA-DE-A3KN-01A-11D-A20C-08	TCGA-DE-A3KN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	07a7c634-bd9a-4fc2-b9fe-87b060ec3d1f	1c6abcc3-1a61-441a-921d-6d06f762c1a3	g.chr11:94373825_94373827delACC								PIWIL4 (19239 upstream) : AMOTL1 (127681 downstream)																							tgcttggaagaccaccaccacca	0.000													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	13	77402228	77402228	+	IGR	DEL	A	-	-			TCGA-DE-A3KN-01A-11D-A20C-08	TCGA-DE-A3KN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	07a7c634-bd9a-4fc2-b9fe-87b060ec3d1f	1c6abcc3-1a61-441a-921d-6d06f762c1a3	g.chr13:77402228delA								LMO7 (968224 upstream) : KCTD12 (52076 downstream)																							agggaaggggagggggaaagg	0.000													2	4	---	---	---	---					
SOX21	11166	broad.mit.edu	37	13	95363807	95363809	+	In_Frame_Del	DEL	GCG	-	-			TCGA-DE-A3KN-01A-11D-A20C-08	TCGA-DE-A3KN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	07a7c634-bd9a-4fc2-b9fe-87b060ec3d1f	1c6abcc3-1a61-441a-921d-6d06f762c1a3	g.chr13:95363807_95363809delGCG	uc001vma.2	-	1	581_583	c.495_497delCGC	c.(493-498)GCCGCG>GCG	p.165_166AA>A	uc001vmb.1_5'Flank	NM_007084	NP_009015	Q9Y651	SOX21_HUMAN	SRY-box 21	165_166					regulation of transcription from RNA polymerase II promoter|stem cell differentiation	nucleus	DNA binding|sequence-specific DNA binding RNA polymerase II transcription factor activity				0	all_neural(89;0.0646)|Medulloblastoma(90;0.163)					GGGGCTGCCCgcggcggcggcgg	0.389													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	14	97064704	97064706	+	IGR	DEL	TCC	-	-			TCGA-DE-A3KN-01A-11D-A20C-08	TCGA-DE-A3KN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	07a7c634-bd9a-4fc2-b9fe-87b060ec3d1f	1c6abcc3-1a61-441a-921d-6d06f762c1a3	g.chr14:97064704_97064706delTCC								PAPOLA (31258 upstream) : VRK1 (198978 downstream)																							ccctccgtcttcctcctcctcct	0.069													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	53627633	53627633	+	IGR	DEL	T	-	-			TCGA-DE-A3KN-01A-11D-A20C-08	TCGA-DE-A3KN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	07a7c634-bd9a-4fc2-b9fe-87b060ec3d1f	1c6abcc3-1a61-441a-921d-6d06f762c1a3	g.chr17:53627633delT								MMD (128292 upstream) : TMEM100 (169357 downstream)																							TGATTGTCTCTTTTTTTTACC	0.189													4	8	---	---	---	---					
Unknown	0	broad.mit.edu	37	18	65627565	65627567	+	IGR	DEL	TGC	-	-			TCGA-DE-A3KN-01A-11D-A20C-08	TCGA-DE-A3KN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	07a7c634-bd9a-4fc2-b9fe-87b060ec3d1f	1c6abcc3-1a61-441a-921d-6d06f762c1a3	g.chr18:65627565_65627567delTGC								DSEL (443598 upstream) : TMX3 (713360 downstream)																							GTAACAGCGAtgctgctgctgct	0.281													2	4	---	---	---	---					
CCDC159	126075	broad.mit.edu	37	19	11459665	11459666	+	Frame_Shift_Ins	INS	-	A	A	rs142796564	by1000genomes	TCGA-DE-A3KN-01A-11D-A20C-08	TCGA-DE-A3KN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	07a7c634-bd9a-4fc2-b9fe-87b060ec3d1f	1c6abcc3-1a61-441a-921d-6d06f762c1a3	g.chr19:11459665_11459666insA	uc010xlw.1	+	2	143_144	c.64_65insA	c.(64-66)GAGfs	p.E22fs	TMEM205_uc002mrb.2_5'Flank|TMEM205_uc002mra.2_5'Flank|TMEM205_uc002mqz.2_5'Flank|TMEM205_uc002mrc.2_5'Flank|CCDC159_uc010xlr.1_Intron|CCDC159_uc010xls.1_Intron|CCDC159_uc010xlt.1_Intron|CCDC159_uc010xlu.1_Intron|CCDC159_uc010xlv.1_Intron	NM_001080503	NP_001073972	P0C7I6	CC159_HUMAN	coiled-coil domain-containing-like	54										ovary(1)	1						CAAGGCTCTGGAGCGTACAGCT	0.639													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	85137125	85137126	+	IGR	INS	-	CCA	CCA			TCGA-DE-A3KN-01A-11D-A20C-08	TCGA-DE-A3KN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	07a7c634-bd9a-4fc2-b9fe-87b060ec3d1f	1c6abcc3-1a61-441a-921d-6d06f762c1a3	g.chr2:85137125_85137126insCCA								TMSB10 (3326 upstream) : KCMF1 (61105 downstream)																							catcaccattgccaccatcact	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	96517784	96517786	+	IGR	DEL	TAA	-	-	rs113889919		TCGA-DE-A3KN-01A-11D-A20C-08	TCGA-DE-A3KN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	07a7c634-bd9a-4fc2-b9fe-87b060ec3d1f	1c6abcc3-1a61-441a-921d-6d06f762c1a3	g.chr2:96517784_96517786delTAA								TRIM43 (252317 upstream) : LOC729234 (158513 downstream)																							AAAGACATACTAATTATCATAAC	0.291													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	20	46824300	46824302	+	IGR	DEL	CCT	-	-			TCGA-DE-A3KN-01A-11D-A20C-08	TCGA-DE-A3KN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	07a7c634-bd9a-4fc2-b9fe-87b060ec3d1f	1c6abcc3-1a61-441a-921d-6d06f762c1a3	g.chr20:46824300_46824302delCCT								SULF2 (408940 upstream) : LOC284749 (164352 downstream)																							ATGCAATTCCcctcctcctcctc	0.502													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	20	48814750	48814750	+	IGR	DEL	A	-	-			TCGA-DE-A3KN-01A-11D-A20C-08	TCGA-DE-A3KN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	07a7c634-bd9a-4fc2-b9fe-87b060ec3d1f	1c6abcc3-1a61-441a-921d-6d06f762c1a3	g.chr20:48814750delA								CEBPB (5538 upstream) : PTPN1 (312141 downstream)																							AAGGATGGGGAGGGCACAGTG	0.657													2	4	---	---	---	---					
CLIC6	54102	broad.mit.edu	37	21	36042463	36042492	+	In_Frame_Del	DEL	GCGTAGAAGCGGGGGTCCCGGCGGGGGACA	-	-	rs62213790	by1000genomes	TCGA-DE-A3KN-01A-11D-A20C-08	TCGA-DE-A3KN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	07a7c634-bd9a-4fc2-b9fe-87b060ec3d1f	1c6abcc3-1a61-441a-921d-6d06f762c1a3	g.chr21:36042463_36042492delGCGTAGAAGCGGGGGTCCCGGCGGGGGACA	uc010gmt.1	+	1	776_805	c.776_805delGCGTAGAAGCGGGGGTCCCGGCGGGGGACA	c.(775-807)GGCGTAGAAGCGGGGGTCCCGGCGGGGGACAGC>GGC	p.VEAGVPAGDS260del	CLIC6_uc002yuf.1_In_Frame_Del_p.VEAGVPAGDS260del	NM_053277	NP_444507	Q96NY7	CLIC6_HUMAN	chloride intracellular channel 6	260_269	13 X 10 AA tandem repeat of G-D-[SNG]- [VIM]-[DEQ]-A-[EAG]-[GDVE]-[PRG]-[LAVP].|12.					chloride channel complex|cytoplasm|plasma membrane	voltage-gated chloride channel activity			ovary(1)|central_nervous_system(1)	2						GCGGGGGACGGCGTAGAAGCGGGGGTCCCGGCGGGGGACAGCGTAGAAGC	0.761													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	22	50321746	50321747	+	IGR	INS	-	T	T	rs143100257	by1000genomes	TCGA-DE-A3KN-01A-11D-A20C-08	TCGA-DE-A3KN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	07a7c634-bd9a-4fc2-b9fe-87b060ec3d1f	1c6abcc3-1a61-441a-921d-6d06f762c1a3	g.chr22:50321746_50321747insT								CRELD2 (560 upstream) : PIM3 (32396 downstream)																							CCCCGCCGATGCCGCCAGTGGT	0.683													6	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	156517946	156517946	+	IGR	DEL	G	-	-			TCGA-DE-A3KN-01A-11D-A20C-08	TCGA-DE-A3KN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	07a7c634-bd9a-4fc2-b9fe-87b060ec3d1f	1c6abcc3-1a61-441a-921d-6d06f762c1a3	g.chr6:156517946delG								MIR1202 (249933 upstream) : ARID1B (581140 downstream)																							gggtgggggcggggcgggggc	0.050													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	2523522	2523522	+	IGR	DEL	G	-	-			TCGA-DE-A3KN-01A-11D-A20C-08	TCGA-DE-A3KN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	07a7c634-bd9a-4fc2-b9fe-87b060ec3d1f	1c6abcc3-1a61-441a-921d-6d06f762c1a3	g.chr7:2523522delG								CHST12 (49308 upstream) : LFNG (35957 downstream)																							TTCAGAGCCAGGGGGGCCAGG	0.647													2	4	---	---	---	---					
LUC7L2	51631	broad.mit.edu	37	7	139094365	139094366	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-DE-A3KN-01A-11D-A20C-08	TCGA-DE-A3KN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	07a7c634-bd9a-4fc2-b9fe-87b060ec3d1f	1c6abcc3-1a61-441a-921d-6d06f762c1a3	g.chr7:139094365_139094366delAG	uc003vux.2	+	7	1118_1119	c.744_745delAG	c.(742-747)GAAGAGfs	p.E248fs	LUC7L2_uc011kqs.1_Frame_Shift_Del_p.E245fs|LUC7L2_uc011kqt.1_Frame_Shift_Del_p.E314fs|LUC7L2_uc003vuy.2_Frame_Shift_Del_p.E247fs|LUC7L2_uc003vuz.1_Frame_Shift_Del_p.E195fs|LUC7L2_uc003vva.2_Frame_Shift_Del_p.E195fs	NM_016019	NP_057103	Q9Y383	LC7L2_HUMAN	LUC7-like 2	248_249	Arg/Ser-rich.						enzyme binding|metal ion binding				0	Melanoma(164;0.242)					AACGAAGAGAAGAGAGAGAGAG	0.391													10	46	---	---	---	---					
Unknown	0	broad.mit.edu	37	X	115806169	115806169	+	IGR	DEL	A	-	-			TCGA-DE-A3KN-01A-11D-A20C-08	TCGA-DE-A3KN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	07a7c634-bd9a-4fc2-b9fe-87b060ec3d1f	1c6abcc3-1a61-441a-921d-6d06f762c1a3	g.chrX:115806169delA								CXorf61 (212032 upstream) : None (None downstream)																							AATATGATCTAAAATGGACCA	0.313													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	X	151801810	151801812	+	IGR	DEL	TGG	-	-			TCGA-DE-A3KN-01A-11D-A20C-08	TCGA-DE-A3KN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	07a7c634-bd9a-4fc2-b9fe-87b060ec3d1f	1c6abcc3-1a61-441a-921d-6d06f762c1a3	g.chrX:151801810_151801812delTGG								GABRA3 (181979 upstream) : GABRQ (4825 downstream)																							TCTgtggtaatggtggtggtggt	0.345													2	4	---	---	---	---					
