Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
PPCS	79717	broad.mit.edu	37	1	42925432	42925432	+	Silent	SNP	T	C	C			TCGA-DJ-A1QG-01A-11D-A14W-08	TCGA-DJ-A1QG-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6423bb49-a2d1-4c64-9da3-21d387df5510	1de19931-dbc5-4464-9c0c-3cc08cbd4846	g.chr1:42925432T>C	uc001chl.2	+	3	835	c.771T>C	c.(769-771)GCT>GCC	p.A257A	PPCS_uc001chk.2_Silent_p.A84A	NM_024664	NP_078940	Q9HAB8	PPCS_HUMAN	phosphopantothenoylcysteine synthetase isoform	257					coenzyme biosynthetic process|pantothenate metabolic process	cytosol	phosphopantothenate--cysteine ligase activity				0	Ovarian(52;0.00744)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				TGGTGGTGGCTAATATCCTTG	0.398000													3	137	---	---	---	---	0	0	0.115264	0	0
NRAS	4893	broad.mit.edu	37	1	115256529	115256529	+	Missense_Mutation	SNP	T	C	C	rs11554290		TCGA-DJ-A1QG-01A-11D-A14W-08	TCGA-DJ-A1QG-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6423bb49-a2d1-4c64-9da3-21d387df5510	1de19931-dbc5-4464-9c0c-3cc08cbd4846	g.chr1:115256529T>C	uc009wgu.2	-	3	436	c.182A>G	c.(181-183)CAA>CGA	p.Q61R		NM_002524	NP_002515	P01111	RASN_HUMAN	neuroblastoma RAS viral (v-ras) oncogene homolog	61	GTP.		Q -> K (in neuroblastoma cell).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	Golgi membrane|plasma membrane	GTP binding|GTPase activity	p.Q61R(757)|p.Q61K(537)|p.Q61L(147)|p.Q61H(95)|p.Q61P(21)|p.Q61E(9)|p.Q61?(4)|p.Q61Q(3)|p.Q61_E62>HK(1)		haematopoietic_and_lymphoid_tissue(1008)|skin(956)|thyroid(334)|large_intestine(62)|NS(60)|soft_tissue(32)|lung(31)|upper_aerodigestive_tract(25)|urinary_tract(12)|liver(10)|adrenal_gland(9)|autonomic_ganglia(8)|testis(8)|central_nervous_system(8)|prostate(8)|breast(7)|biliary_tract(6)|ovary(6)|stomach(5)|pancreas(5)|endometrium(2)|kidney(2)|cervix(2)|eye(1)	2607	all_epithelial(7;5.11e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		GTACTCTTCTTGTCCAGCTGT	0.458000	Q61L(HEPG2_LIVER)|Q61R(SKMEL2_SKIN)|Q61R(KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(IPC298_SKIN)|Q61P(TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(MHHES1_BONE)|Q61R(HT1197_URINARY_TRACT)|Q61L(MELJUSO_SKIN)|Q61R(ONS76_CENTRAL_NERVOUS_SYSTEM)|Q61R(KU1919_URINARY_TRACT)|Q61L(C3A_LIVER)|Q61R(TT2609C02_THYROID)|Q61R(NCIH2347_LUNG)|Q61L(KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61R(SW1271_LUNG)|Q61L(HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)	50	Mis		melanoma|MM|AML|thyroid				Noonan_syndrome	TSP Lung(23;0.16)|Multiple Myeloma(1;<1E-6)			55	106	---	---	---	---	0	0	0.139131	0	0
ITGA10	8515	broad.mit.edu	37	1	145534935	145534935	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A1QG-01A-11D-A14W-08	TCGA-DJ-A1QG-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6423bb49-a2d1-4c64-9da3-21d387df5510	1de19931-dbc5-4464-9c0c-3cc08cbd4846	g.chr1:145534935G>A	uc001eoa.2	+	15	1914	c.1838G>A	c.(1837-1839)CGA>CAA	p.R613Q	NBPF10_uc001emp.3_Intron|ITGA10_uc010oyv.1_Missense_Mutation_p.R482Q|ITGA10_uc009wiw.2_Missense_Mutation_p.R470Q|ITGA10_uc010oyw.1_Missense_Mutation_p.R558Q	NM_003637	NP_003628	O75578	ITA10_HUMAN	integrin, alpha 10 precursor	613	Extracellular (Potential).|FG-GAP 7.				cell-matrix adhesion|integrin-mediated signaling pathway	integrin complex	collagen binding|receptor activity			lung(2)|ovary(2)|kidney(2)|large_intestine(1)|skin(1)	8	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					TACTTTGGCCGAAGTGTGGAT	0.577000													33	73	---	---	---	---	0	0	0.054565	0	0
FLG2	388698	broad.mit.edu	37	1	152328852	152328852	+	Silent	SNP	C	T	T			TCGA-DJ-A1QG-01A-11D-A14W-08	TCGA-DJ-A1QG-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6423bb49-a2d1-4c64-9da3-21d387df5510	1de19931-dbc5-4464-9c0c-3cc08cbd4846	g.chr1:152328852C>T	uc001ezw.3	-	3	1483	c.1410G>A	c.(1408-1410)GGG>GGA	p.G470G	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	470	Ser-rich.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CTGAGCTAGACCCATGCTGGT	0.522000													6	145	---	---	---	---	0	0	0.029380	0	0
C1orf112	55732	broad.mit.edu	37	1	169811624	169811624	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DJ-A1QG-01A-11D-A14W-08	TCGA-DJ-A1QG-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6423bb49-a2d1-4c64-9da3-21d387df5510	1de19931-dbc5-4464-9c0c-3cc08cbd4846	g.chr1:169811624C>T	uc001ggp.2	+	19	2102	c.1792C>T	c.(1792-1794)CAA>TAA	p.Q598*	C1orf112_uc001ggj.2_RNA|C1orf112_uc001ggq.2_Nonsense_Mutation_p.Q598*|C1orf112_uc009wvt.2_Nonsense_Mutation_p.Q275*|C1orf112_uc009wvu.1_Nonsense_Mutation_p.Q474*|C1orf112_uc001ggr.2_Nonsense_Mutation_p.Q463*|C1orf112_uc010plv.1_Nonsense_Mutation_p.Q540*	NM_018186	NP_060656	Q9NSG2	CA112_HUMAN	hypothetical protein LOC55732	598											0	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					TACAGGAAAACAAACTGCAAT	0.368000													26	59	---	---	---	---	0	0	0.091800	0	0
OR6F1	343169	broad.mit.edu	37	1	247875916	247875916	+	Silent	SNP	A	G	G			TCGA-DJ-A1QG-01A-11D-A14W-08	TCGA-DJ-A1QG-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6423bb49-a2d1-4c64-9da3-21d387df5510	1de19931-dbc5-4464-9c0c-3cc08cbd4846	g.chr1:247875916A>G	uc001idj.1	-	1	142	c.142T>C	c.(142-144)TTG>CTG	p.L48L		NM_001005286	NP_001005286	Q8NGZ6	OR6F1_HUMAN	olfactory receptor, family 6, subfamily F,	48	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.0168)			GTGCTCACCAACATCAAGATA	0.473000													9	113	---	---	---	---	0	0	0.047766	0	0
MS4A12	54860	broad.mit.edu	37	11	60274284	60274284	+	Silent	SNP	C	G	G			TCGA-DJ-A1QG-01A-11D-A14W-08	TCGA-DJ-A1QG-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6423bb49-a2d1-4c64-9da3-21d387df5510	1de19931-dbc5-4464-9c0c-3cc08cbd4846	g.chr11:60274284C>G	uc001npr.2	+	6	729	c.672C>G	c.(670-672)GCC>GCG	p.A224A		NM_017716	NP_060186	Q9NXJ0	M4A12_HUMAN	membrane-spanning 4-domains, subfamily A, member	224	Cytoplasmic (Potential).					integral to membrane	receptor activity				0						CCCATTTTGCCAACCAAGCAA	0.418000													11	39	---	---	---	---	0	0	0.105934	0	0
HTR3A	3359	broad.mit.edu	37	11	113853948	113853948	+	Missense_Mutation	SNP	A	G	G			TCGA-DJ-A1QG-01A-11D-A14W-08	TCGA-DJ-A1QG-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6423bb49-a2d1-4c64-9da3-21d387df5510	1de19931-dbc5-4464-9c0c-3cc08cbd4846	g.chr11:113853948A>G	uc010rxb.1	+	5	732	c.499A>G	c.(499-501)ATC>GTC	p.I167V	HTR3A_uc010rxa.1_Missense_Mutation_p.I167V|HTR3A_uc009yyx.2_RNA|HTR3A_uc010rxc.1_Missense_Mutation_p.I146V	NM_213621	NP_998786	P46098	5HT3A_HUMAN	5-hydroxytryptamine (serotonin) receptor 3A	161	Extracellular (Potential).				digestion|synaptic transmission	cell junction|integral to plasma membrane|postsynaptic membrane	serotonin binding|serotonin receptor activity|serotonin-activated cation-selective channel activity				0		all_cancers(61;2.31e-17)|all_epithelial(67;2.1e-10)|all_hematologic(158;4.64e-05)|Melanoma(852;0.000312)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|all_neural(223;0.0281)|Prostate(24;0.0294)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;2.71e-06)|Epithelial(105;2.58e-05)|all cancers(92;0.000238)|OV - Ovarian serous cystadenocarcinoma(223;0.191)	Alosetron(DB00969)|Chloroprocaine(DB01161)|Cisapride(DB00604)|Dolasetron(DB00757)|Granisetron(DB00889)|Mirtazapine(DB00370)|Ondansetron(DB00904)|Palonosetron(DB00377)|Procaine(DB00721)|Tubocurarine(DB01199)	TAGCCTCGACATCTACAACTT	0.547000													9	142	---	---	---	---	0	0	0.047766	0	0
INHBC	3626	broad.mit.edu	37	12	57843479	57843479	+	Missense_Mutation	SNP	A	G	G			TCGA-DJ-A1QG-01A-11D-A14W-08	TCGA-DJ-A1QG-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6423bb49-a2d1-4c64-9da3-21d387df5510	1de19931-dbc5-4464-9c0c-3cc08cbd4846	g.chr12:57843479A>G	uc001snv.1	+	2	860	c.733A>G	c.(733-735)AGG>GGG	p.R245G		NM_005538	NP_005529	P55103	INHBC_HUMAN	inhibin beta C chain preproprotein	245					growth	extracellular region	growth factor activity|hormone activity|transforming growth factor beta receptor binding				0						AGGAGGGTCCAGGATGTGCTG	0.577000													19	48	---	---	---	---	0	0	0.043863	0	0
MBD6	114785	broad.mit.edu	37	12	57919484	57919484	+	Missense_Mutation	SNP	C	T	T			TCGA-DJ-A1QG-01A-11D-A14W-08	TCGA-DJ-A1QG-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6423bb49-a2d1-4c64-9da3-21d387df5510	1de19931-dbc5-4464-9c0c-3cc08cbd4846	g.chr12:57919484C>T	uc001soj.1	+	6	957	c.733C>T	c.(733-735)CCT>TCT	p.P245S	MBD6_uc001sok.1_Missense_Mutation_p.P112S|MBD6_uc001sol.1_5'Flank	NM_052897	NP_443129	Q96DN6	MBD6_HUMAN	methyl-CpG binding domain protein 6	245	Pro-rich.					chromosome|nucleus	chromatin binding|DNA binding			central_nervous_system(3)|ovary(1)	4						CCTGGGCTCTCCTCCGGCCCC	0.612000													4	226	---	---	---	---	0	0	0.009096	0	0
GOLGA6L10	647042	broad.mit.edu	37	15	83013581	83013581	+	RNA	SNP	C	T	T			TCGA-DJ-A1QG-01A-11D-A14W-08	TCGA-DJ-A1QG-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6423bb49-a2d1-4c64-9da3-21d387df5510	1de19931-dbc5-4464-9c0c-3cc08cbd4846	g.chr15:83013581C>T	uc010unt.1	-	7		c.578G>A			uc002bhl.2_Intron|uc002bhm.2_Intron|GOLGA6L10_uc010uny.1_Intron|GOLGA6L10_uc002bia.1_5'Flank			A6NI86	GG6LA_HUMAN	Homo sapiens cDNA FLJ40113 fis, clone TESTI2008621.												0						CCTGTTCACACAGCCTCTCCT	0.567000													3	4	---	---	---	---	0	0	0.009096	0	0
C16orf91	283951	broad.mit.edu	37	16	1470345	1470345	+	Missense_Mutation	SNP	C	T	T			TCGA-DJ-A1QG-01A-11D-A14W-08	TCGA-DJ-A1QG-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6423bb49-a2d1-4c64-9da3-21d387df5510	1de19931-dbc5-4464-9c0c-3cc08cbd4846	g.chr16:1470345C>T	uc002clr.2	-	2	322	c.301G>A	c.(301-303)GCG>ACG	p.A101T	C16orf91_uc010uvd.1_Missense_Mutation_p.A258T	NM_001010878	NP_001010878	Q4G0I0	CSMT1_HUMAN	hypothetical protein LOC283951	101	Cytoplasmic (Potential).					integral to membrane					0						CACTGGTCCGCCTCGCTCTCC	0.617000													41	73	---	---	---	---	0	0	0.131918	0	0
NOMO1	23420	broad.mit.edu	37	16	14958553	14958553	+	Missense_Mutation	SNP	G	T	T			TCGA-DJ-A1QG-01A-11D-A14W-08	TCGA-DJ-A1QG-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6423bb49-a2d1-4c64-9da3-21d387df5510	1de19931-dbc5-4464-9c0c-3cc08cbd4846	g.chr16:14958553G>T	uc002dcv.2	+	13	1573	c.1507G>T	c.(1507-1509)GCA>TCA	p.A503S		NM_014287	NP_055102	Q15155	NOMO1_HUMAN	nodal modulator 1 precursor	503	Extracellular (Potential).					integral to membrane	carbohydrate binding|carboxypeptidase activity|protein binding			ovary(1)	1						ACAGTTCTTGGCATCAGTTTC	0.468000													63	151	---	---	---	---	1.49723e-40	1.807e-40	0.139131	1	0
Unknown	0	broad.mit.edu	37	16	32190719	32190719	+	RNA	SNP	C	T	T			TCGA-DJ-A1QG-01A-11D-A14W-08	TCGA-DJ-A1QG-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6423bb49-a2d1-4c64-9da3-21d387df5510	1de19931-dbc5-4464-9c0c-3cc08cbd4846	g.chr16:32190719C>T	uc010vfv.1	-	7		c.1105G>A								Homo sapiens cDNA FLJ60890 complete cds, moderately similar to HECT domain and RCC1-like domain-containing protein 2.																		TATGAGACGTCGGACAGCTAC	0.507000													5	16	---	---	---	---	0	0	0.014758	0	0
CDH11	1009	broad.mit.edu	37	16	65016141	65016141	+	Missense_Mutation	SNP	C	A	A			TCGA-DJ-A1QG-01A-11D-A14W-08	TCGA-DJ-A1QG-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6423bb49-a2d1-4c64-9da3-21d387df5510	1de19931-dbc5-4464-9c0c-3cc08cbd4846	g.chr16:65016141C>A	uc002eoi.2	-	8	1497	c.1063G>T	c.(1063-1065)GAC>TAC	p.D355Y	CDH11_uc010cdn.2_Intron|CDH11_uc002eoj.2_Missense_Mutation_p.D355Y|CDH11_uc010vin.1_Missense_Mutation_p.D229Y|CDH11_uc002eok.1_RNA	NM_001797	NP_001788	P55287	CAD11_HUMAN	cadherin 11, type 2 preproprotein	355	Cadherin 3.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion|ossification|skeletal system development	integral to membrane|plasma membrane	calcium ion binding|protein binding			lung(10)|ovary(3)|skin(1)	14		Ovarian(137;0.0973)		OV - Ovarian serous cystadenocarcinoma(108;0.205)		AACTTCGGGTCGATGTGCACG	0.468000			T	USP6	aneurysmal bone cysts					TSP Lung(24;0.17)			29	47	---	---	---	---	9.39395e-14	1.06061e-13	0.116897	1	0
TMEM101	84336	broad.mit.edu	37	17	42090386	42090386	+	Silent	SNP	G	T	T			TCGA-DJ-A1QG-01A-11D-A14W-08	TCGA-DJ-A1QG-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6423bb49-a2d1-4c64-9da3-21d387df5510	1de19931-dbc5-4464-9c0c-3cc08cbd4846	g.chr17:42090386G>T	uc002ieu.2	-	3	481	c.456C>A	c.(454-456)CTC>CTA	p.L152L	TMEM101_uc010wis.1_Silent_p.L94L	NM_032376	NP_115752	Q96IK0	TM101_HUMAN	transmembrane protein 101	152	Helical; (Potential).				positive regulation of I-kappaB kinase/NF-kappaB cascade	integral to membrane	signal transducer activity			upper_aerodigestive_tract(1)|central_nervous_system(1)	2		Breast(137;0.0264)|Prostate(33;0.0861)		BRCA - Breast invasive adenocarcinoma(366;0.113)		CCACACAGATGAGGTAGATAC	0.597000													3	29	---	---	---	---	0.004672	0.00495515	0.115264	1	0
ICAM3	3385	broad.mit.edu	37	19	10449575	10449575	+	Silent	SNP	C	T	T			TCGA-DJ-A1QG-01A-11D-A14W-08	TCGA-DJ-A1QG-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6423bb49-a2d1-4c64-9da3-21d387df5510	1de19931-dbc5-4464-9c0c-3cc08cbd4846	g.chr19:10449575C>T	uc002mob.2	-	2	181	c.126G>A	c.(124-126)GTG>GTA	p.V42V	ICAM3_uc010dxd.1_5'UTR|ICAM3_uc010xlf.1_Intron	NM_002162	NP_002153	P32942	ICAM3_HUMAN	intercellular adhesion molecule 3 precursor	42	Extracellular (Potential).				cell-cell adhesion|regulation of immune response	integral to plasma membrane	integrin binding			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3			OV - Ovarian serous cystadenocarcinoma(20;6.13e-09)|Epithelial(33;9.69e-06)|all cancers(31;2.05e-05)			CAGCAGAGAGCACAGGGTTCT	0.552000													22	37	---	---	---	---	0	0	0.069288	0	0
PLCD4	84812	broad.mit.edu	37	2	219501103	219501103	+	Missense_Mutation	SNP	T	A	A			TCGA-DJ-A1QG-01A-11D-A14W-08	TCGA-DJ-A1QG-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6423bb49-a2d1-4c64-9da3-21d387df5510	1de19931-dbc5-4464-9c0c-3cc08cbd4846	g.chr2:219501103T>A	uc002vij.1	+	15	2365	c.2170T>A	c.(2170-2172)TGC>AGC	p.C724S		NM_032726	NP_116115	Q9BRC7	PLCD4_HUMAN	phospholipase C, delta 4	724					intracellular signal transduction|lipid catabolic process	endoplasmic reticulum|membrane|nucleus	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(3)	3		Renal(207;0.0915)		Epithelial(149;5.11e-07)|all cancers(144;0.000104)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)		GCCTTGGACCTGCATGCAACA	0.552000													4	267	---	---	---	---	0	0	0.009096	0	0
CHEK2	11200	broad.mit.edu	37	22	29091784	29091784	+	Missense_Mutation	SNP	C	A	A			TCGA-DJ-A1QG-01A-11D-A14W-08	TCGA-DJ-A1QG-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6423bb49-a2d1-4c64-9da3-21d387df5510	1de19931-dbc5-4464-9c0c-3cc08cbd4846	g.chr22:29091784C>A	uc003adu.1	-	11	1245	c.1173G>T	c.(1171-1173)TTG>TTT	p.L391F	CHEK2_uc003ads.1_Missense_Mutation_p.L170F|CHEK2_uc010gvh.1_Missense_Mutation_p.L300F|CHEK2_uc010gvi.1_Intron|CHEK2_uc010gvj.1_Intron|CHEK2_uc003adr.1_RNA|CHEK2_uc010gvk.1_RNA|CHEK2_uc003adt.1_Missense_Mutation_p.L434F|CHEK2_uc003adv.1_Missense_Mutation_p.L362F|CHEK2_uc003adw.1_Missense_Mutation_p.L391F|CHEK2_uc003adx.1_Missense_Mutation_p.L170F|CHEK2_uc003ady.1_Missense_Mutation_p.L391F|CHEK2_uc003adz.1_Missense_Mutation_p.L195F	NM_007194	NP_009125	O96017	CHK2_HUMAN	protein kinase CHK2 isoform a	391	Protein kinase.				cell cycle|DNA damage checkpoint|DNA damage response, signal transduction resulting in induction of apoptosis|replicative senescence	PML body	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			central_nervous_system(17)|stomach(1)|ovary(1)|lung(1)	20						CTTCAGGCGCCAAGTAGGTGG	0.423000			F			breast 		Direct_reversal_of_damage|Other_conserved_DNA_damage_response_genes	Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|CHEK2-associated_cancer				26	14	---	---	---	---	4.87955e-14	5.69281e-14	0.108266	1	0
DMP1	1758	broad.mit.edu	37	4	88584444	88584444	+	Missense_Mutation	SNP	A	T	T			TCGA-DJ-A1QG-01A-11D-A14W-08	TCGA-DJ-A1QG-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6423bb49-a2d1-4c64-9da3-21d387df5510	1de19931-dbc5-4464-9c0c-3cc08cbd4846	g.chr4:88584444A>T	uc003hqv.2	+	6	1618	c.1514A>T	c.(1513-1515)GAT>GTT	p.D505V	DMP1_uc003hqw.2_Missense_Mutation_p.D489V	NM_004407	NP_004398	Q13316	DMP1_HUMAN	dentin matrix acidic phosphoprotein 1 isoform 1	505					biomineral tissue development|ossification	cytoplasm|nucleus|proteinaceous extracellular matrix	calcium ion binding|integrin binding			pancreas(1)|skin(1)	2		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.227)		OV - Ovarian serous cystadenocarcinoma(123;0.000516)		GGGGACCAAGATGACAATGAC	0.413000													56	88	---	---	---	---	0	0	0.139131	0	0
HIST1H4J	8363	broad.mit.edu	37	6	27791912	27791912	+	Missense_Mutation	SNP	C	G	G			TCGA-DJ-A1QG-01A-11D-A14W-08	TCGA-DJ-A1QG-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6423bb49-a2d1-4c64-9da3-21d387df5510	1de19931-dbc5-4464-9c0c-3cc08cbd4846	g.chr6:27791912C>G	uc003njp.2	+	1	10	c.10C>G	c.(10-12)CGC>GGC	p.R4G	uc003njq.2_5'Flank	NM_021968	NP_068803	P62805	H4_HUMAN	histone cluster 1, H4j	4					CenH3-containing nucleosome assembly at centromere|negative regulation of megakaryocyte differentiation|phosphatidylinositol-mediated signaling|telomere maintenance	nucleoplasm|nucleosome	DNA binding|protein binding			ovary(1)|pancreas(1)	2						CATGTCTGGCCGCGGCAAAGG	0.612000													10	24	---	---	---	---	0	0	0.055883	0	0
C6orf211	79624	broad.mit.edu	37	6	151779565	151779565	+	Missense_Mutation	SNP	G	C	C			TCGA-DJ-A1QG-01A-11D-A14W-08	TCGA-DJ-A1QG-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6423bb49-a2d1-4c64-9da3-21d387df5510	1de19931-dbc5-4464-9c0c-3cc08cbd4846	g.chr6:151779565G>C	uc003qok.1	+	3	509	c.250G>C	c.(250-252)GAT>CAT	p.D84H	C6orf211_uc011ees.1_5'UTR	NM_024573	NP_078849	Q9H993	CF211_HUMAN	hypothetical protein LOC79624	84							protein binding				0			BRCA - Breast invasive adenocarcinoma(37;0.183)	OV - Ovarian serous cystadenocarcinoma(155;5.27e-11)		GAAATTTGTTGATACTGATAT	0.363000													29	50	---	---	---	---	0	0	0.134883	0	0
THBS2	7058	broad.mit.edu	37	6	169637364	169637364	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A1QG-01A-11D-A14W-08	TCGA-DJ-A1QG-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6423bb49-a2d1-4c64-9da3-21d387df5510	1de19931-dbc5-4464-9c0c-3cc08cbd4846	g.chr6:169637364G>A	uc003qwt.2	-	10	1626	c.1378C>T	c.(1378-1380)CGC>TGC	p.R460C		NM_003247	NP_003238	P35442	TSP2_HUMAN	thrombospondin 2 precursor	460	TSP type-1 2.				cell adhesion	extracellular region	calcium ion binding|heparin binding|protein binding|structural molecule activity			ovary(5)	5		Breast(66;1.78e-05)|Ovarian(120;0.0728)|Esophageal squamous(34;0.247)		OV - Ovarian serous cystadenocarcinoma(33;1.85e-21)|BRCA - Breast invasive adenocarcinoma(81;1.43e-06)|GBM - Glioblastoma multiforme(31;0.000379)		AGACGGATGCGTGTGATATTG	0.607000													23	25	---	---	---	---	0	0	0.062417	0	0
TMEM38B	55151	broad.mit.edu	37	9	108483839	108483839	+	Silent	SNP	G	A	A	rs141978983		TCGA-DJ-A1QG-01A-11D-A14W-08	TCGA-DJ-A1QG-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6423bb49-a2d1-4c64-9da3-21d387df5510	1de19931-dbc5-4464-9c0c-3cc08cbd4846	g.chr9:108483839G>A	uc004bcu.1	+	3	408	c.291G>A	c.(289-291)CCG>CCA	p.P97P	TMEM38B_uc010mtn.1_Intron	NM_018112	NP_060582	Q9NVV0	TM38B_HUMAN	transmembrane protein 38B	97	Cytoplasmic (Potential).					integral to membrane|nuclear membrane|sarcoplasmic reticulum membrane	potassium channel activity			ovary(1)|skin(1)	2						TTTTTTGCCCGCATGACCTAG	0.353000													3	38	---	---	---	---	0	0	0.115264	0	0
GAS5	60674	broad.mit.edu	37	1	173836247	173836248	+	RNA	INS	-	A	A	rs145452199	by1000genomes	TCGA-DJ-A1QG-01A-11D-A14W-08	TCGA-DJ-A1QG-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6423bb49-a2d1-4c64-9da3-21d387df5510	1de19931-dbc5-4464-9c0c-3cc08cbd4846	g.chr1:173836247_173836248insA	uc001gji.2	-	1		c.1_2insT			GAS5_uc001gjj.2_Intron|GAS5_uc001gjk.2_Intron|SNORD81_uc009wwi.1_5'Flank|SNORD47_uc001gjl.2_5'Flank|SNORD80_uc009wwj.1_5'Flank|SNORD79_uc009wwk.1_5'Flank|SNORD78_uc009wwl.2_5'Flank|SNORD44_uc001gjn.1_5'Flank|SNORD77_uc009wwm.1_5'Flank|SNORD76_uc009wwn.1_5'Flank|SNORD75_uc009wwo.1_5'Flank|ZBTB37_uc001gjp.1_5'Flank|ZBTB37_uc001gjq.3_5'Flank|ZBTB37_uc009wwp.1_5'Flank|ZBTB37_uc001gjr.2_5'Flank					Homo sapiens mRNA; cDNA DKFZp564D0164 (from clone DKFZp564D0164).												0						GAGTGTTCTTTAAAAAAACGGT	0.381													5	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	81632875	81632877	+	IGR	DEL	TCC	-	-	rs4039338		TCGA-DJ-A1QG-01A-11D-A14W-08	TCGA-DJ-A1QG-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6423bb49-a2d1-4c64-9da3-21d387df5510	1de19931-dbc5-4464-9c0c-3cc08cbd4846	g.chr10:81632875_81632877delTCC								LOC650623 (184227 upstream) : MBL1P (31777 downstream)																							CATCTTCACGTCCTTCTCTCACA	0.389													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	12	53535722	53535722	+	IGR	DEL	A	-	-	rs141513257		TCGA-DJ-A1QG-01A-11D-A14W-08	TCGA-DJ-A1QG-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6423bb49-a2d1-4c64-9da3-21d387df5510	1de19931-dbc5-4464-9c0c-3cc08cbd4846	g.chr12:53535722delA								SOAT2 (17400 upstream) : CSAD (15726 downstream)																							aaaaaaaaagaaaaaaaaaaa	0.254													4	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	31613183	31613183	+	IGR	DEL	T	-	-			TCGA-DJ-A1QG-01A-11D-A14W-08	TCGA-DJ-A1QG-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6423bb49-a2d1-4c64-9da3-21d387df5510	1de19931-dbc5-4464-9c0c-3cc08cbd4846	g.chr16:31613183delT								CSDAP1 (32338 upstream) : KIAA0664P3 (98751 downstream)																							TTCTCTGATGTTTAGTTAGGT	0.373													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	108519282	108519283	+	IGR	INS	-	A	A			TCGA-DJ-A1QG-01A-11D-A14W-08	TCGA-DJ-A1QG-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6423bb49-a2d1-4c64-9da3-21d387df5510	1de19931-dbc5-4464-9c0c-3cc08cbd4846	g.chr2:108519282_108519283insA								RGPD4 (10283 upstream) : SLC5A7 (83712 downstream)																							ttctgtctcagaaaaaaaaaaa	0.188													3	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	32441392	32441393	+	IGR	INS	-	T	T	rs71556927		TCGA-DJ-A1QG-01A-11D-A14W-08	TCGA-DJ-A1QG-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6423bb49-a2d1-4c64-9da3-21d387df5510	1de19931-dbc5-4464-9c0c-3cc08cbd4846	g.chr6:32441392_32441393insT								HLA-DRA (28571 upstream) : HLA-DRB1 (43770 downstream)																							AATTATGGGGAGGAGGTTACTG	0.505													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	167621962	167621962	+	IGR	DEL	A	-	-	rs10583811		TCGA-DJ-A1QG-01A-11D-A14W-08	TCGA-DJ-A1QG-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6423bb49-a2d1-4c64-9da3-21d387df5510	1de19931-dbc5-4464-9c0c-3cc08cbd4846	g.chr6:167621962delA								TCP10L2 (25567 upstream) : UNC93A (82841 downstream)																							GTTAGAATAGAAAAAAAATAC	0.338													5	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	56357562	56357563	+	IGR	INS	-	AAA	AAA			TCGA-DJ-A1QG-01A-11D-A14W-08	TCGA-DJ-A1QG-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6423bb49-a2d1-4c64-9da3-21d387df5510	1de19931-dbc5-4464-9c0c-3cc08cbd4846	g.chr7:56357562_56357563insAAA								PSPH (173472 upstream) : DKFZp434L192 (206353 downstream)																							gactccatctcaaaaaaaaaaa	0.158													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	57659644	57659644	+	IGR	DEL	G	-	-	rs111399871		TCGA-DJ-A1QG-01A-11D-A14W-08	TCGA-DJ-A1QG-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6423bb49-a2d1-4c64-9da3-21d387df5510	1de19931-dbc5-4464-9c0c-3cc08cbd4846	g.chr7:57659644delG								ZNF716 (126379 upstream) : None (None downstream)																							CATGTTTTTTGTGTTTTTCTT	0.353													4	2	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	68455229	68455230	+	IGR	INS	-	AC	AC			TCGA-DJ-A1QG-01A-11D-A14W-08	TCGA-DJ-A1QG-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6423bb49-a2d1-4c64-9da3-21d387df5510	1de19931-dbc5-4464-9c0c-3cc08cbd4846	g.chr9:68455229_68455230insAC								FAM27B (661040 upstream) : MIR1299 (547009 downstream)																							GGGAGACTTCTGTGCAGAGGCT	0.584													4	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	69511231	69511232	+	IGR	INS	-	T	T			TCGA-DJ-A1QG-01A-11D-A14W-08	TCGA-DJ-A1QG-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6423bb49-a2d1-4c64-9da3-21d387df5510	1de19931-dbc5-4464-9c0c-3cc08cbd4846	g.chr9:69511231_69511232insT								ANKRD20A4 (86123 upstream) : LOC100133920 (140129 downstream)																							GTGTTTTCATCTTTTTTTTTTT	0.535													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	69787982	69787985	+	IGR	DEL	AACA	-	-	rs59524350		TCGA-DJ-A1QG-01A-11D-A14W-08	TCGA-DJ-A1QG-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6423bb49-a2d1-4c64-9da3-21d387df5510	1de19931-dbc5-4464-9c0c-3cc08cbd4846	g.chr9:69787982_69787985delAACA								LOC100133920 (123033 upstream) : FOXD4L5 (387724 downstream)																							AGATAGAGGTAACAAACTTAAATA	0.368													2	4	---	---	---	---					
