Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
TUT1	64852	broad.mit.edu	37	11	62343317	62343317	+	Missense_Mutation	SNP	T	C	C			TCGA-E3-A3E2-01A-11D-A20C-08	TCGA-E3-A3E2-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	7adbf25b-0508-4625-9781-8fd3d054814e	6783d5e4-0cf6-4fdf-af00-edcb75c87770	g.chr11:62343317T>C	uc001nto.2	-	9	2026	c.1988A>G	c.(1987-1989)CAG>CGG	p.Q663R	EEF1G_uc001ntm.1_5'Flank|EEF1G_uc010rlw.1_5'Flank|TUT1_uc001ntp.1_Missense_Mutation_p.Q159R	NM_022830	NP_073741	Q9H6E5	STPAP_HUMAN	terminal uridylyl transferase 1, U6	625					mRNA cleavage|mRNA polyadenylation|snRNA processing	nuclear speck|nucleolus	ATP binding|enzyme binding|mRNA 3'-UTR binding|polynucleotide adenylyltransferase activity|RNA uridylyltransferase activity|zinc ion binding			central_nervous_system(1)|skin(1)	2						CCTGAATACCTGCACCAGGGC	0.607000													8	161	---	---	---	---	0	0	0.278610	0	0
LOC284232	284232	broad.mit.edu	37	13	19415742	19415742	+	RNA	SNP	T	C	C			TCGA-E3-A3E2-01A-11D-A20C-08	TCGA-E3-A3E2-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	7adbf25b-0508-4625-9781-8fd3d054814e	6783d5e4-0cf6-4fdf-af00-edcb75c87770	g.chr13:19415742T>C	uc010tcj.1	-	1		c.30368A>G				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						GCTGTTTTCCTAATCTTTCTT	0.313000													3	57	---	---	---	---	0	0	0.115264	0	0
GOLGA6L10	647042	broad.mit.edu	37	15	83014106	83014106	+	Silent	SNP	T	C	C			TCGA-E3-A3E2-01A-11D-A20C-08	TCGA-E3-A3E2-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	7adbf25b-0508-4625-9781-8fd3d054814e	6783d5e4-0cf6-4fdf-af00-edcb75c87770	g.chr15:83014106T>C	uc010uny.1	-	6	539	c.441A>G	c.(439-441)GTA>GTG	p.V147V	GOLGA6L10_uc010unt.1_RNA|uc002bhl.2_Intron|uc002bhm.2_Intron|GOLGA6L10_uc002bia.1_5'Flank	NM_198181	NP_937824	A6NI86	GG6LA_HUMAN	golgi autoantigen, golgin subfamily a, 6D-like	159	Potential.										0						GTAGCTGCTCTACCTTAGATG	0.498000													2	3	---	---	---	---	0	0	0.115264	0	0
ST8SIA2	8128	broad.mit.edu	37	15	92981586	92981586	+	Silent	SNP	G	A	A			TCGA-E3-A3E2-01A-11D-A20C-08	TCGA-E3-A3E2-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	7adbf25b-0508-4625-9781-8fd3d054814e	6783d5e4-0cf6-4fdf-af00-edcb75c87770	g.chr15:92981586G>A	uc002bra.2	+	4	449	c.294G>A	c.(292-294)AAG>AAA	p.K98K	ST8SIA2_uc002brb.2_Silent_p.K77K	NM_006011	NP_006002	Q92186	SIA8B_HUMAN	ST8 alpha-N-acetyl-neuraminide	98	Lumenal (Potential).				axon guidance|N-glycan processing|oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	integral to Golgi membrane	alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity				0	Lung NSC(78;0.0893)|all_lung(78;0.125)		BRCA - Breast invasive adenocarcinoma(143;0.0355)|OV - Ovarian serous cystadenocarcinoma(32;0.203)			TTCACAGGAAGCAGATTTTAA	0.488000													4	208	---	---	---	---	0	0	0.184627	0	0
OR3A3	8392	broad.mit.edu	37	17	3324703	3324703	+	Missense_Mutation	SNP	A	G	G			TCGA-E3-A3E2-01A-11D-A20C-08	TCGA-E3-A3E2-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	7adbf25b-0508-4625-9781-8fd3d054814e	6783d5e4-0cf6-4fdf-af00-edcb75c87770	g.chr17:3324703A>G	uc010vrd.1	+	1	842	c.842A>G	c.(841-843)AAG>AGG	p.K281R		NM_012373	NP_036505	P47888	OR3A3_HUMAN	olfactory receptor, family 3, subfamily A,	281	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GACAAGGATAAGGGGGTTGGG	0.507000													3	193	---	---	---	---	0	0	0.115264	0	0
KRTAP4-12	83755	broad.mit.edu	37	17	39279805	39279805	+	Silent	SNP	G	A	A			TCGA-E3-A3E2-01A-11D-A20C-08	TCGA-E3-A3E2-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	7adbf25b-0508-4625-9781-8fd3d054814e	6783d5e4-0cf6-4fdf-af00-edcb75c87770	g.chr17:39279805G>A	uc002hwa.2	-	1	615	c.570C>T	c.(568-570)TGC>TGT	p.C190C		NM_031854	NP_114060	Q9BQ66	KR412_HUMAN	keratin associated protein 4-12	190						keratin filament					0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000371)			AGGGGCGGGGGCAGGTGGAGA	0.478000													3	24	---	---	---	---	0	0	0.150653	0	0
Unknown	0	broad.mit.edu	37	17	45128671	45128671	+	5'Flank	SNP	T	G	G	rs1056072	by1000genomes	TCGA-E3-A3E2-01A-11D-A20C-08	TCGA-E3-A3E2-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	7adbf25b-0508-4625-9781-8fd3d054814e	6783d5e4-0cf6-4fdf-af00-edcb75c87770	g.chr17:45128671T>G	uc010wkl.1	-						uc010wkm.1_RNA					Homo sapiens cDNA FLJ38031 fis, clone CTONG2013348.																		GCTCACAAAATAAGTTCCAGG	0.308000													3	79	---	---	---	---	0	0	0.115264	0	0
Unknown	0	broad.mit.edu	37	17	45128685	45128685	+	5'Flank	SNP	T	C	C	rs145089594	by1000genomes	TCGA-E3-A3E2-01A-11D-A20C-08	TCGA-E3-A3E2-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	7adbf25b-0508-4625-9781-8fd3d054814e	6783d5e4-0cf6-4fdf-af00-edcb75c87770	g.chr17:45128685T>C	uc010wkl.1	-						uc010wkm.1_RNA					Homo sapiens cDNA FLJ38031 fis, clone CTONG2013348.																		TTCCAGGATATGGCTATACTG	0.289000													4	84	---	---	---	---	0	0	0.150653	0	0
GDPD1	284161	broad.mit.edu	37	17	57298002	57298002	+	Missense_Mutation	SNP	C	T	T			TCGA-E3-A3E2-01A-11D-A20C-08	TCGA-E3-A3E2-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	7adbf25b-0508-4625-9781-8fd3d054814e	6783d5e4-0cf6-4fdf-af00-edcb75c87770	g.chr17:57298002C>T	uc002ixk.1	+	1	169	c.32C>T	c.(31-33)TCT>TTT	p.S11F	GDPD1_uc002ixj.2_Missense_Mutation_p.S11F	NM_182569	NP_872375	Q8N9F7	GDPD1_HUMAN	glycerophosphodiester phosphodiesterase domain	11	Helical; (Potential).				glycerol metabolic process|lipid metabolic process	cytoplasm|integral to membrane	glycerophosphodiester phosphodiesterase activity|metal ion binding				0	all_neural(34;0.0837)|Medulloblastoma(34;0.0922)					TACCTTCTCTCTACGCTAGGA	0.463000											OREG0024617	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	55	115	---	---	---	---	0	0	0.870114	0	0
DOT1L	84444	broad.mit.edu	37	19	2222329	2222329	+	Missense_Mutation	SNP	G	A	A			TCGA-E3-A3E2-01A-11D-A20C-08	TCGA-E3-A3E2-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	7adbf25b-0508-4625-9781-8fd3d054814e	6783d5e4-0cf6-4fdf-af00-edcb75c87770	g.chr19:2222329G>A	uc002lvb.3	+	24	3197	c.3161G>A	c.(3160-3162)GGC>GAC	p.G1054D	DOT1L_uc002lvc.1_Missense_Mutation_p.G348D|DOT1L_uc002lve.1_3'UTR	NM_032482	NP_115871	Q8TEK3	DOT1L_HUMAN	DOT1-like, histone H3 methyltransferase	1054						nucleus	DNA binding|histone-lysine N-methyltransferase activity|protein binding			pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	4		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		ACTGGTGCGGGCAGTGCCAAG	0.667000													3	47	---	---	---	---	0	0	0.115264	0	0
USP37	57695	broad.mit.edu	37	2	219346911	219346911	+	Missense_Mutation	SNP	A	T	T			TCGA-E3-A3E2-01A-11D-A20C-08	TCGA-E3-A3E2-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	7adbf25b-0508-4625-9781-8fd3d054814e	6783d5e4-0cf6-4fdf-af00-edcb75c87770	g.chr2:219346911A>T	uc002vie.2	-	17	2170	c.1717T>A	c.(1717-1719)TCG>ACG	p.S573T	USP37_uc010fvs.1_Missense_Mutation_p.S573T|USP37_uc010zkf.1_Missense_Mutation_p.S573T|USP37_uc002vif.2_Missense_Mutation_p.S573T|USP37_uc002vig.2_Missense_Mutation_p.S501T	NM_020935	NP_065986	Q86T82	UBP37_HUMAN	ubiquitin specific peptidase 37	573					ubiquitin-dependent protein catabolic process	nucleus	cysteine-type peptidase activity|ubiquitin thiolesterase activity			skin(3)|ovary(1)|prostate(1)	5		Renal(207;0.0915)		Epithelial(149;1.08e-06)|all cancers(144;0.000197)|LUSC - Lung squamous cell carcinoma(224;0.00375)|Lung(261;0.00487)		TTGTTAAGCGAGAGAGCCACA	0.388000													5	143	---	---	---	---	0	0	0.217242	0	0
TFIP11	24144	broad.mit.edu	37	22	26899691	26899691	+	Missense_Mutation	SNP	G	A	A			TCGA-E3-A3E2-01A-11D-A20C-08	TCGA-E3-A3E2-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	7adbf25b-0508-4625-9781-8fd3d054814e	6783d5e4-0cf6-4fdf-af00-edcb75c87770	g.chr22:26899691G>A	uc003acr.2	-	6	963	c.589C>T	c.(589-591)CGC>TGC	p.R197C	TFIP11_uc003acs.2_Missense_Mutation_p.R197C|TFIP11_uc003act.2_Missense_Mutation_p.R197C	NM_012143	NP_036275	Q9UBB9	TFP11_HUMAN	tuftelin interacting protein 11	197					biomineral tissue development	catalytic step 2 spliceosome|cytoplasm|nuclear speck	DNA binding|sequence-specific DNA binding transcription factor activity				0						TGAGTGGTGCGCTCGGATCCA	0.488000													6	83	---	---	---	---	0	0	0.217242	0	0
AKIRIN2	55122	broad.mit.edu	37	6	88385612	88385612	+	Silent	SNP	T	C	C			TCGA-E3-A3E2-01A-11D-A20C-08	TCGA-E3-A3E2-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	7adbf25b-0508-4625-9781-8fd3d054814e	6783d5e4-0cf6-4fdf-af00-edcb75c87770	g.chr6:88385612T>C	uc003pmk.2	-	4	1150	c.567A>G	c.(565-567)CAA>CAG	p.Q189Q		NM_018064	NP_060534	Q53H80	AKIR2_HUMAN	akirin 2	189					innate immune response|transcription, DNA-dependent	transcriptional repressor complex					0						GTCGCATTATTTGATCATGCG	0.323000													3	67	---	---	---	---	0	0	0.184627	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-E3-A3E2-01A-11D-A20C-08	TCGA-E3-A3E2-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	7adbf25b-0508-4625-9781-8fd3d054814e	6783d5e4-0cf6-4fdf-af00-edcb75c87770	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				25	59	---	---	---	---	0	0	0.681144	0	0
UNC13B	10497	broad.mit.edu	37	9	35396935	35396935	+	Splice_Site	SNP	G	A	A			TCGA-E3-A3E2-01A-11D-A20C-08	TCGA-E3-A3E2-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	7adbf25b-0508-4625-9781-8fd3d054814e	6783d5e4-0cf6-4fdf-af00-edcb75c87770	g.chr9:35396935G>A	uc003zwq.2	+	27	3577	c.3285_splice	c.e27+1	p.G1095_splice	UNC13B_uc003zwr.2_Splice_Site_p.G1095_splice	NM_006377	NP_006368	O14795	UN13B_HUMAN	UNC13 (C. elegans)-like						excretion|induction of apoptosis|intracellular signal transduction	cell junction|Golgi apparatus|synapse	metal ion binding|receptor activity			ovary(3)|large_intestine(1)|skin(1)	5	all_epithelial(49;0.212)		LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)|STAD - Stomach adenocarcinoma(86;0.194)			GAAGGATGGAGTAAGTCAGGG	0.552000													4	171	---	---	---	---	0	0	0.184627	0	0
TSIX	9383	broad.mit.edu	37	X	73043035	73043035	+	RNA	SNP	T	C	C			TCGA-E3-A3E2-01A-11D-A20C-08	TCGA-E3-A3E2-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	7adbf25b-0508-4625-9781-8fd3d054814e	6783d5e4-0cf6-4fdf-af00-edcb75c87770	g.chrX:73043035T>C	uc004ebn.2	+	1		c.30996T>C			XIST_uc004ebm.1_RNA	NR_003255				Homo sapiens XIST antisense RNA (non-protein coding) (TSIX), non-coding RNA.												0						CCCTGAGCCCTTTTATCAGTC	0.333000													2	6	---	---	---	---	0	0	0.115264	0	0
Unknown	0	broad.mit.edu	37	1	92109624	92109624	+	IGR	DEL	A	-	-			TCGA-E3-A3E2-01A-11D-A20C-08	TCGA-E3-A3E2-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	7adbf25b-0508-4625-9781-8fd3d054814e	6783d5e4-0cf6-4fdf-af00-edcb75c87770	g.chr1:92109624delA								HSP90B3P (290 upstream) : TGFBR3 (36278 downstream)																							TCTACAGCTGAAAACGATAAA	0.204													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	1	229547118	229547118	+	IGR	DEL	C	-	-			TCGA-E3-A3E2-01A-11D-A20C-08	TCGA-E3-A3E2-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	7adbf25b-0508-4625-9781-8fd3d054814e	6783d5e4-0cf6-4fdf-af00-edcb75c87770	g.chr1:229547118delC								C1orf96 (68430 upstream) : ACTA1 (19877 downstream)																							gtcccctcctccccccctccc	0.159													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	130262778	130262778	+	IGR	DEL	C	-	-			TCGA-E3-A3E2-01A-11D-A20C-08	TCGA-E3-A3E2-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	7adbf25b-0508-4625-9781-8fd3d054814e	6783d5e4-0cf6-4fdf-af00-edcb75c87770	g.chr10:130262778delC								MKI67 (338310 upstream) : None (None downstream)																							tcctcctcctccaccatcctc	0.000													7	182	---	---	---	---					
Unknown	0	broad.mit.edu	37	12	14366966	14366966	+	IGR	DEL	A	-	-			TCGA-E3-A3E2-01A-11D-A20C-08	TCGA-E3-A3E2-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	7adbf25b-0508-4625-9781-8fd3d054814e	6783d5e4-0cf6-4fdf-af00-edcb75c87770	g.chr12:14366966delA								GRIN2B (233944 upstream) : ATF7IP (151645 downstream)																							GCATATGAGTAGGAGGGACAG	0.458													2	4	---	---	---	---					
TXNRD1	7296	broad.mit.edu	37	12	104651840	104651840	+	Frame_Shift_Del	DEL	T	-	-			TCGA-E3-A3E2-01A-11D-A20C-08	TCGA-E3-A3E2-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	7adbf25b-0508-4625-9781-8fd3d054814e	6783d5e4-0cf6-4fdf-af00-edcb75c87770	g.chr12:104651840delT	uc010swk.1	+	3	309	c.287delT	c.(286-288)CTTfs	p.L96fs	TXNRD1_uc001tkm.1_Frame_Shift_Del_p.L99fs	NM_001093771	NP_001087240	Q16881	TRXR1_HUMAN	thioredoxin reductase 1 isoform 3	96	Glutaredoxin.				cell redox homeostasis|cellular lipid metabolic process|electron transport chain|nucleobase, nucleoside and nucleotide interconversion|signal transduction|transport	cytosol|nucleolus	electron carrier activity|flavin adenine dinucleotide binding|NADP binding|protein disulfide oxidoreductase activity|thioredoxin-disulfide reductase activity				0						TATTTTGTGCTTGAACTTGAT	0.308													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	12	131939618	131939618	+	IGR	DEL	C	-	-	rs36096743		TCGA-E3-A3E2-01A-11D-A20C-08	TCGA-E3-A3E2-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	7adbf25b-0508-4625-9781-8fd3d054814e	6783d5e4-0cf6-4fdf-af00-edcb75c87770	g.chr12:131939618delC								LOC116437 (242143 upstream) : SFRS8 (256017 downstream)																							CTGGCTCCTGCCCCCACCCCT	0.577													6	1	---	---	---	---					
Unknown	0	broad.mit.edu	37	13	54615316	54615316	+	IGR	DEL	A	-	-	rs149312827		TCGA-E3-A3E2-01A-11D-A20C-08	TCGA-E3-A3E2-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	7adbf25b-0508-4625-9781-8fd3d054814e	6783d5e4-0cf6-4fdf-af00-edcb75c87770	g.chr13:54615316delA								OLFM4 (989130 upstream) : MIR1297 (270791 downstream)																							attgcattacaacatgtacaa	0.080													11	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	14	75842230	75842230	+	IGR	DEL	C	-	-			TCGA-E3-A3E2-01A-11D-A20C-08	TCGA-E3-A3E2-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	7adbf25b-0508-4625-9781-8fd3d054814e	6783d5e4-0cf6-4fdf-af00-edcb75c87770	g.chr14:75842230delC								FOS (93295 upstream) : JDP2 (52279 downstream)																							accaccaccaccatcaacacc	0.139													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	634792	634793	+	5'Flank	DEL	CT	-	-	rs59164425		TCGA-E3-A3E2-01A-11D-A20C-08	TCGA-E3-A3E2-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	7adbf25b-0508-4625-9781-8fd3d054814e	6783d5e4-0cf6-4fdf-af00-edcb75c87770	g.chr16:634792_634793delCT	uc010uuj.1	-											SubName: Full=cDNA FLJ56783;																		CCTGTGTCCCCTGTCCCCCAAA	0.376													6	1	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	89670555	89670555	+	IGR	DEL	G	-	-			TCGA-E3-A3E2-01A-11D-A20C-08	TCGA-E3-A3E2-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	7adbf25b-0508-4625-9781-8fd3d054814e	6783d5e4-0cf6-4fdf-af00-edcb75c87770	g.chr16:89670555delG								CPNE7 (6902 upstream) : DPEP1 (9161 downstream)																							GGGGGCTGGAGGGAAGCACTG	0.726													3	3	---	---	---	---					
CHD3	1107	broad.mit.edu	37	17	7788212	7788214	+	In_Frame_Del	DEL	GAG	-	-			TCGA-E3-A3E2-01A-11D-A20C-08	TCGA-E3-A3E2-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	7adbf25b-0508-4625-9781-8fd3d054814e	6783d5e4-0cf6-4fdf-af00-edcb75c87770	g.chr17:7788212_7788214delGAG	uc002gjd.2	+	1	90_92	c.88_90delGAG	c.(88-90)GAGdel	p.E35del		NM_001005271	NP_001005271	Q12873	CHD3_HUMAN	chromodomain helicase DNA binding protein 3	450					chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding|zinc ion binding			breast(1)	1		Prostate(122;0.202)				agagggcgacgaggaggaggagg	0.305													4	6	---	---	---	---					
ISYNA1	51477	broad.mit.edu	37	19	18547527	18547528	+	Frame_Shift_Del	DEL	CG	-	-			TCGA-E3-A3E2-01A-11D-A20C-08	TCGA-E3-A3E2-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	7adbf25b-0508-4625-9781-8fd3d054814e	6783d5e4-0cf6-4fdf-af00-edcb75c87770	g.chr19:18547527_18547528delCG	uc002njd.1	-	5	625_626	c.575_576delCG	c.(574-576)GCGfs	p.A192fs	ISYNA1_uc002nja.1_Frame_Shift_Del_p.A64fs|ISYNA1_uc002njb.1_Frame_Shift_Del_p.A42fs|ISYNA1_uc002njc.1_Frame_Shift_Del_p.A42fs|ISYNA1_uc010xqh.1_Intron|ISYNA1_uc002nje.1_Frame_Shift_Del_p.A138fs|ISYNA1_uc002njf.1_Frame_Shift_Del_p.A42fs	NM_016368	NP_057452	Q9NPH2	INO1_HUMAN	inositol-3-phosphate synthase 1	192					inositol biosynthetic process|phospholipid biosynthetic process	cytoplasm	binding|inositol-3-phosphate synthase activity			ovary(1)|pancreas(1)	2						TGAGGTTGTCCGCGCGCGCGCT	0.644													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	58655794	58655796	+	IGR	DEL	TGC	-	-			TCGA-E3-A3E2-01A-11D-A20C-08	TCGA-E3-A3E2-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	7adbf25b-0508-4625-9781-8fd3d054814e	6783d5e4-0cf6-4fdf-af00-edcb75c87770	g.chr2:58655794_58655796delTGC								FANCL (187279 upstream) : None (None downstream)																							TCTGTTCGTTtgctgctgctgct	0.404													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	3	125978940	125978941	+	IGR	INS	-	CT	CT	rs142551046	by1000genomes	TCGA-E3-A3E2-01A-11D-A20C-08	TCGA-E3-A3E2-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	7adbf25b-0508-4625-9781-8fd3d054814e	6783d5e4-0cf6-4fdf-af00-edcb75c87770	g.chr3:125978940_125978941insCT								ALDH1L1 (79455 upstream) : KLF15 (82537 downstream)																							ccattcttcccctctccacctc	0.099													4	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	65563954	65563956	+	IGR	DEL	GGA	-	-			TCGA-E3-A3E2-01A-11D-A20C-08	TCGA-E3-A3E2-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	7adbf25b-0508-4625-9781-8fd3d054814e	6783d5e4-0cf6-4fdf-af00-edcb75c87770	g.chr7:65563954_65563956delGGA								ASL (5633 upstream) : CRCP (15849 downstream)																							agcaggagatggaggaggaggag	0.059													2	4	---	---	---	---					
GDF6	392255	broad.mit.edu	37	8	97157245	97157245	+	Frame_Shift_Del	DEL	G	-	-			TCGA-E3-A3E2-01A-11D-A20C-08	TCGA-E3-A3E2-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	7adbf25b-0508-4625-9781-8fd3d054814e	6783d5e4-0cf6-4fdf-af00-edcb75c87770	g.chr8:97157245delG	uc003yhp.2	-	2	1014	c.914delC	c.(913-915)CCGfs	p.P305fs		NM_001001557	NP_001001557	Q6KF10	GDF6_HUMAN	growth differentiation factor 6 precursor	305					activin receptor signaling pathway|BMP signaling pathway|growth|pathway-restricted SMAD protein phosphorylation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of transcription, DNA-dependent	extracellular space	cytokine activity|growth factor activity			ovary(1)|breast(1)|pancreas(1)	3	Breast(36;2.67e-05)					gcccgcgcccgggcccgcAGC	0.408													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	133419030	133419032	+	IGR	DEL	GCT	-	-			TCGA-E3-A3E2-01A-11D-A20C-08	TCGA-E3-A3E2-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	7adbf25b-0508-4625-9781-8fd3d054814e	6783d5e4-0cf6-4fdf-af00-edcb75c87770	g.chr9:133419030_133419032delGCT								ASS1 (42370 upstream) : LOC100272217 (33707 downstream)																							GAGGCCCAAAgctgctgctgctg	0.478													2	4	---	---	---	---					
CACNA1F	778	broad.mit.edu	37	X	49090355	49090356	+	5'Flank	INS	-	GGT	GGT	rs3842474		TCGA-E3-A3E2-01A-11D-A20C-08	TCGA-E3-A3E2-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	7adbf25b-0508-4625-9781-8fd3d054814e	6783d5e4-0cf6-4fdf-af00-edcb75c87770	g.chrX:49090355_49090356insGGT	uc004dnb.2	-						CACNA1F_uc010nip.2_5'Flank|CCDC22_uc011mna.1_5'Flank|CCDC22_uc004dnc.1_5'Flank|CCDC22_uc004dnd.1_5'Flank	NM_005183	NP_005174	O60840	CAC1F_HUMAN	calcium channel, voltage-dependent, L type,						axon guidance|detection of light stimulus involved in visual perception	voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity			breast(3)|ovary(1)|kidney(1)|skin(1)	6					Verapamil(DB00661)	GCGGCGGCCGGGGGCATCCGGG	0.554													3	3	---	---	---	---					
