Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
LAMC2	3918	broad.mit.edu	37	1	183208652	183208652	+	Missense_Mutation	SNP	A	G	G			TCGA-E3-A3E5-01A-11D-A20C-08	TCGA-E3-A3E5-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4c3a335-7c74-45ed-8b36-50ce11f7ac8e	599a6a1a-9973-4054-acf4-d987bdda59c1	g.chr1:183208652A>G	uc001gqa.2	+	20	3337	c.3023A>G	c.(3022-3024)AAG>AGG	p.K1008R	LAMC2_uc001gpz.3_Missense_Mutation_p.K1008R|LAMC2_uc010poa.1_Missense_Mutation_p.K708R	NM_005562	NP_005553	Q13753	LAMC2_HUMAN	laminin, gamma 2 isoform a precursor	1008	Potential.|Domain II and I.				cell adhesion|epidermis development|hemidesmosome assembly		heparin binding			skin(2)|ovary(1)	3						CAGAGGGCAAAGAATGGGGCC	0.542													43	77	---	---	---	---	0	0	0.870114	0	0
CFHR4	10877	broad.mit.edu	37	1	196883707	196883707	+	Silent	SNP	C	T	T			TCGA-E3-A3E5-01A-11D-A20C-08	TCGA-E3-A3E5-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4c3a335-7c74-45ed-8b36-50ce11f7ac8e	599a6a1a-9973-4054-acf4-d987bdda59c1	g.chr1:196883707C>T	uc001gto.2	+	4	591	c.522C>T	c.(520-522)TAC>TAT	p.Y174Y	CFHR4_uc009wyy.2_Silent_p.Y420Y|CFHR4_uc001gtp.2_Silent_p.Y421Y	NM_006684	NP_006675	Q92496	FHR4_HUMAN	complement factor H-related 4 precursor	174	Sushi 3.					extracellular region	lipid transporter activity			ovary(1)|pancreas(1)|skin(1)	3						CATTGGACTACGAATGCTACG	0.393													5	107	---	---	---	---	0	0	0.248553	0	0
EIF3F	8665	broad.mit.edu	37	11	8015971	8015971	+	Splice_Site	SNP	A	T	T			TCGA-E3-A3E5-01A-11D-A20C-08	TCGA-E3-A3E5-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4c3a335-7c74-45ed-8b36-50ce11f7ac8e	599a6a1a-9973-4054-acf4-d987bdda59c1	g.chr11:8015971A>T	uc001mfw.2	+	5	687	c.654_splice	c.e5-2	p.S218_splice	EIF3F_uc010rbj.1_Splice_Site_p.S69_splice	NM_003754	NP_003745	O00303	EIF3F_HUMAN	eukaryotic translation initiation factor 3,							cytosol|eukaryotic translation initiation factor 3 complex	protein binding|translation initiation factor activity			lung(1)	1				Epithelial(150;1.44e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		CTCCTTCCGCAGCACTTTAAT	0.512													7	26	---	---	---	---	0	0	0.248553	0	0
LDHA	3939	broad.mit.edu	37	11	18421059	18421059	+	Missense_Mutation	SNP	C	G	G			TCGA-E3-A3E5-01A-11D-A20C-08	TCGA-E3-A3E5-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4c3a335-7c74-45ed-8b36-50ce11f7ac8e	599a6a1a-9973-4054-acf4-d987bdda59c1	g.chr11:18421059C>G	uc001mok.3	+	3	480	c.208C>G	c.(208-210)CTT>GTT	p.L70V	LDHA_uc010rdc.1_Missense_Mutation_p.L70V|LDHA_uc009yhn.2_Missense_Mutation_p.L70V|LDHA_uc009yho.2_Intron|LDHA_uc001mol.3_Missense_Mutation_p.L70V|LDHA_uc010rdd.1_Missense_Mutation_p.L99V	NM_005566	NP_005557	P00338	LDHA_HUMAN	lactate dehydrogenase A isoform 1	70					glycolysis|pyruvate metabolic process	cytosol	L-lactate dehydrogenase activity|protein binding			central_nervous_system(3)	3					NADH(DB00157)	ACATGGCAGCCTTTTCCTTAG	0.338													52	79	---	---	---	---	0	0	0.870114	0	0
TLN2	83660	broad.mit.edu	37	15	63069044	63069044	+	Missense_Mutation	SNP	G	A	A			TCGA-E3-A3E5-01A-11D-A20C-08	TCGA-E3-A3E5-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4c3a335-7c74-45ed-8b36-50ce11f7ac8e	599a6a1a-9973-4054-acf4-d987bdda59c1	g.chr15:63069044G>A	uc002alb.3	+	40	5449	c.5449G>A	c.(5449-5451)GAA>AAA	p.E1817K	TLN2_uc002alc.3_Missense_Mutation_p.E210K|TLN2_uc002ald.2_Missense_Mutation_p.E210K	NM_015059	NP_055874	Q9Y4G6	TLN2_HUMAN	talin 2	1817					cell adhesion|cell-cell junction assembly|cytoskeletal anchoring at plasma membrane	actin cytoskeleton|cytoplasm|focal adhesion|ruffle|synapse	actin binding|insulin receptor binding|structural constituent of cytoskeleton			ovary(5)|upper_aerodigestive_tract(2)|lung(2)|breast(2)	11						GACGCTGAACGAAGCTGCCAG	0.567													3	84	---	---	---	---	0	0	0.150653	0	0
FLJ36000	284124	broad.mit.edu	37	17	21904193	21904193	+	RNA	SNP	C	G	G	rs9904221	by1000genomes	TCGA-E3-A3E5-01A-11D-A20C-08	TCGA-E3-A3E5-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4c3a335-7c74-45ed-8b36-50ce11f7ac8e	599a6a1a-9973-4054-acf4-d987bdda59c1	g.chr17:21904193C>G	uc002gza.2	+	1		c.132C>G				NR_027084				Homo sapiens cDNA FLJ36000 fis, clone TESTI2015180.												0						cagcctcaggcctgccaggac	0													5	77	---	---	---	---	0	0	0.278610	0	0
FLJ36000	284124	broad.mit.edu	37	17	21904197	21904197	+	RNA	SNP	C	T	T	rs9904223	by1000genomes	TCGA-E3-A3E5-01A-11D-A20C-08	TCGA-E3-A3E5-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4c3a335-7c74-45ed-8b36-50ce11f7ac8e	599a6a1a-9973-4054-acf4-d987bdda59c1	g.chr17:21904197C>T	uc002gza.2	+	1		c.136C>T				NR_027084				Homo sapiens cDNA FLJ36000 fis, clone TESTI2015180.												0						ctcaggcctgccaggacggtg	0													5	74	---	---	---	---	0	0	0.248553	0	0
NUFIP2	57532	broad.mit.edu	37	17	27620945	27620945	+	Missense_Mutation	SNP	G	T	T			TCGA-E3-A3E5-01A-11D-A20C-08	TCGA-E3-A3E5-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4c3a335-7c74-45ed-8b36-50ce11f7ac8e	599a6a1a-9973-4054-acf4-d987bdda59c1	g.chr17:27620945G>T	uc002hdy.3	-	1	222	c.133C>A	c.(133-135)CAC>AAC	p.H45N	NUFIP2_uc002hdx.3_Missense_Mutation_p.H45N	NM_020772	NP_065823	Q7Z417	NUFP2_HUMAN	nuclear fragile X mental retardation protein	45	His-rich.					nucleus|polysomal ribosome	protein binding|RNA binding			skin(2)|ovary(1)|breast(1)	4			BRCA - Breast invasive adenocarcinoma(11;0.000457)|Colorectal(6;0.0178)|COAD - Colon adenocarcinoma(6;0.0551)			tggtggtggtggttgtggctg	0.244													4	182	---	---	---	---	0.00024832	0.000260736	0.150653	1	0
TCAP	8557	broad.mit.edu	37	17	37822184	37822184	+	Missense_Mutation	SNP	C	T	T			TCGA-E3-A3E5-01A-11D-A20C-08	TCGA-E3-A3E5-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4c3a335-7c74-45ed-8b36-50ce11f7ac8e	599a6a1a-9973-4054-acf4-d987bdda59c1	g.chr17:37822184C>T	uc002hsh.2	+	2	340	c.326C>T	c.(325-327)ACC>ATC	p.T109I	PNMT_uc002hsi.1_5'Flank	NM_003673	NP_003664	O15273	TELT_HUMAN	telethonin	109					adult heart development|cardiac muscle contraction|cardiac muscle fiber development|cardiac muscle tissue morphogenesis|detection of mechanical stimulus|muscle filament sliding|response to stress|sarcomere organization|skeletal muscle contraction|skeletal muscle myosin thick filament assembly|skeletal muscle thin filament assembly	cytosol|Z disc	structural constituent of muscle|titin binding|titin Z domain binding				0	all_cancers(6;6.59e-85)|all_epithelial(6;2.89e-103)|Breast(7;1.05e-86)|Lung NSC(9;1.15e-09)|all_lung(9;6.24e-09)|Colorectal(19;0.000442)|Esophageal squamous(10;0.052)		UCEC - Uterine corpus endometrioid carcinoma (11;0.000126)|BRCA - Breast invasive adenocarcinoma(8;3.87e-45)|Lung(15;0.00193)|LUAD - Lung adenocarcinoma(14;0.0664)|LUSC - Lung squamous cell carcinoma(15;0.171)			CGTGAGGACACCCCCATCCAG	0.662													17	15	---	---	---	---	0	0	0.500413	0	0
LRRC37A4	55073	broad.mit.edu	37	17	43587657	43587657	+	RNA	SNP	C	T	T	rs148404065	by1000genomes	TCGA-E3-A3E5-01A-11D-A20C-08	TCGA-E3-A3E5-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4c3a335-7c74-45ed-8b36-50ce11f7ac8e	599a6a1a-9973-4054-acf4-d987bdda59c1	g.chr17:43587657C>T	uc002ije.2	-	3		c.1397G>A			uc010wjp.1_RNA					Homo sapiens cDNA FLJ34414 fis, clone HEART2003168, highly similar to Homo sapiens c114 SLIT-like testicular protein (LOC474170), mRNA.												0						GGTGACAACACATCTGTTTTA	0.279													5	126	---	---	---	---	0	0	0.184627	0	0
DNAH17	8632	broad.mit.edu	37	17	76464923	76464923	+	5'Flank	SNP	C	T	T			TCGA-E3-A3E5-01A-11D-A20C-08	TCGA-E3-A3E5-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4c3a335-7c74-45ed-8b36-50ce11f7ac8e	599a6a1a-9973-4054-acf4-d987bdda59c1	g.chr17:76464923C>T	uc010dhp.1	-						DNAH17_uc002jvs.2_RNA					SubName: Full=DNAH17 variant protein; Flags: Fragment;											ovary(6)|breast(2)|skin(1)	9			BRCA - Breast invasive adenocarcinoma(99;0.00294)|OV - Ovarian serous cystadenocarcinoma(97;0.0656)			ACCGAGGGAACGTTCTTCACG	0.542													3	77	---	---	---	---	0	0	0.150653	0	0
ANKRD30B	374860	broad.mit.edu	37	18	14850291	14850291	+	Silent	SNP	T	C	C			TCGA-E3-A3E5-01A-11D-A20C-08	TCGA-E3-A3E5-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4c3a335-7c74-45ed-8b36-50ce11f7ac8e	599a6a1a-9973-4054-acf4-d987bdda59c1	g.chr18:14850291T>C	uc010dlo.2	+	35	3297	c.3117T>C	c.(3115-3117)CTT>CTC	p.L1039L	ANKRD30B_uc010xal.1_Silent_p.L181L	NM_001145029	NP_001138501	Q9BXX2	AN30B_HUMAN	ankyrin repeat domain 30B	1124	Potential.									ovary(1)|skin(1)	2						AAGAGCAACTTAGGAAAAAGT	0.294													13	13	---	---	---	---	0	0	0.457914	0	0
MUC16	94025	broad.mit.edu	37	19	9048764	9048764	+	Missense_Mutation	SNP	A	G	G			TCGA-E3-A3E5-01A-11D-A20C-08	TCGA-E3-A3E5-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4c3a335-7c74-45ed-8b36-50ce11f7ac8e	599a6a1a-9973-4054-acf4-d987bdda59c1	g.chr19:9048764A>G	uc002mkp.2	-	5	33071	c.32867T>C	c.(32866-32868)CTT>CCT	p.L10956P		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	10958	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGGTTCACCAAGAGAAAAAGT	0.498													3	116	---	---	---	---	0	0	0.248553	0	0
MUC16	94025	broad.mit.edu	37	19	9048771	9048771	+	Missense_Mutation	SNP	A	G	G			TCGA-E3-A3E5-01A-11D-A20C-08	TCGA-E3-A3E5-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4c3a335-7c74-45ed-8b36-50ce11f7ac8e	599a6a1a-9973-4054-acf4-d987bdda59c1	g.chr19:9048771A>G	uc002mkp.2	-	5	33064	c.32860T>C	c.(32860-32862)TTT>CTT	p.F10954L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	10956	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CCAAGAGAAAAAGTCAGAATT	0.483													3	118	---	---	---	---	0	0	0.248553	0	0
TMEM160	54958	broad.mit.edu	37	19	47549926	47549926	+	Missense_Mutation	SNP	G	A	A			TCGA-E3-A3E5-01A-11D-A20C-08	TCGA-E3-A3E5-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4c3a335-7c74-45ed-8b36-50ce11f7ac8e	599a6a1a-9973-4054-acf4-d987bdda59c1	g.chr19:47549926G>A	uc002pfz.2	-	2	236	c.226C>T	c.(226-228)CGC>TGC	p.R76C		NM_017854	NP_060324	Q9NX00	TM160_HUMAN	transmembrane protein 160	76	Helical; (Potential).					integral to membrane					0		all_cancers(25;8.13e-05)|all_lung(116;0.000901)|all_epithelial(76;0.00185)|Lung NSC(112;0.00215)|all_neural(266;0.0652)|Ovarian(192;0.15)		all cancers(93;5.36e-05)|OV - Ovarian serous cystadenocarcinoma(262;6.95e-05)|Epithelial(262;0.00363)|GBM - Glioblastoma multiforme(486;0.0242)		AGGCCATTGCGGAACCAGGAG	0.612													4	186	---	---	---	---	0	0	0.184627	0	0
HEATR5B	54497	broad.mit.edu	37	2	37227778	37227778	+	Silent	SNP	T	C	C			TCGA-E3-A3E5-01A-11D-A20C-08	TCGA-E3-A3E5-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4c3a335-7c74-45ed-8b36-50ce11f7ac8e	599a6a1a-9973-4054-acf4-d987bdda59c1	g.chr2:37227778T>C	uc002rpp.1	-	33	5592	c.5496A>G	c.(5494-5496)ACA>ACG	p.T1832T	HEATR5B_uc002rpo.1_Silent_p.T145T|HEATR5B_uc010ezy.1_Silent_p.T327T	NM_019024	NP_061897	Q9P2D3	HTR5B_HUMAN	HEAT repeat containing 5B	1832							binding			ovary(5)|skin(2)|breast(1)	8		all_hematologic(82;0.21)				GAATCAGAGCTGTCCACTGTT	0.428													53	98	---	---	---	---	0	0	0.870114	0	0
TTN	7273	broad.mit.edu	37	2	179611917	179611917	+	Silent	SNP	T	C	C			TCGA-E3-A3E5-01A-11D-A20C-08	TCGA-E3-A3E5-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4c3a335-7c74-45ed-8b36-50ce11f7ac8e	599a6a1a-9973-4054-acf4-d987bdda59c1	g.chr2:179611917T>C	uc002unb.2	-	46	15434	c.15210A>G	c.(15208-15210)CTA>CTG	p.L5070L	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGTATCTCTCTAGAGTCTCTC	0.522													3	119	---	---	---	---	0	0	0.115264	0	0
HDLBP	3069	broad.mit.edu	37	2	242179484	242179484	+	Missense_Mutation	SNP	G	C	C			TCGA-E3-A3E5-01A-11D-A20C-08	TCGA-E3-A3E5-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4c3a335-7c74-45ed-8b36-50ce11f7ac8e	599a6a1a-9973-4054-acf4-d987bdda59c1	g.chr2:242179484G>C	uc002waz.2	-	18	2451	c.2223C>G	c.(2221-2223)TTC>TTG	p.F741L	HDLBP_uc002wba.2_Missense_Mutation_p.F741L|HDLBP_uc002wbb.2_Missense_Mutation_p.F693L	NM_203346	NP_976221	Q00341	VIGLN_HUMAN	high density lipoprotein binding protein	741	KH 9.				cholesterol metabolic process|lipid transport	cytoplasm|high-density lipoprotein particle|nucleus|plasma membrane	lipid binding|protein binding|RNA binding			breast(3)|skin(1)	4		all_cancers(19;7.77e-41)|all_epithelial(40;1.74e-18)|Breast(86;1.53e-05)|Renal(207;0.00179)|all_lung(227;0.00338)|Ovarian(221;0.00556)|Lung NSC(271;0.0121)|Esophageal squamous(248;0.129)|all_hematologic(139;0.158)|Melanoma(123;0.16)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;8.13e-34)|all cancers(36;4.71e-31)|OV - Ovarian serous cystadenocarcinoma(60;2.34e-15)|Kidney(56;3.72e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.76e-08)|BRCA - Breast invasive adenocarcinoma(100;3.38e-06)|Lung(119;0.000109)|LUSC - Lung squamous cell carcinoma(224;0.000964)|Colorectal(34;0.0132)|COAD - Colon adenocarcinoma(134;0.0928)		TGCCGATGAGGAATTTGTGGT	0.557													64	95	---	---	---	---	0	0	0.870114	0	0
XYLB	9942	broad.mit.edu	37	3	38420767	38420767	+	Nonsense_Mutation	SNP	C	T	T			TCGA-E3-A3E5-01A-11D-A20C-08	TCGA-E3-A3E5-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4c3a335-7c74-45ed-8b36-50ce11f7ac8e	599a6a1a-9973-4054-acf4-d987bdda59c1	g.chr3:38420767C>T	uc003cic.2	+	15	1334	c.1225C>T	c.(1225-1227)CGA>TGA	p.R409*	XYLB_uc011ayp.1_Nonsense_Mutation_p.R272*|XYLB_uc003cid.1_Nonsense_Mutation_p.R331*	NM_005108	NP_005099	O75191	XYLB_HUMAN	xylulokinase	409					D-xylose metabolic process|generation of precursor metabolites and energy|xylulose catabolic process		ATP binding|xylulokinase activity			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.00372)|Kidney(284;0.00405)		TGTGGAGGTTCGAGCACTAAT	0.483													65	67	---	---	---	---	0	0	0.870114	0	0
CTNNB1	1499	broad.mit.edu	37	3	41280634	41280634	+	Missense_Mutation	SNP	A	G	G			TCGA-E3-A3E5-01A-11D-A20C-08	TCGA-E3-A3E5-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4c3a335-7c74-45ed-8b36-50ce11f7ac8e	599a6a1a-9973-4054-acf4-d987bdda59c1	g.chr3:41280634A>G	uc010hia.1	+	16	2303	c.2147A>G	c.(2146-2148)TAT>TGT	p.Y716C	CTNNB1_uc003ckp.2_Missense_Mutation_p.Y716C|CTNNB1_uc003ckq.2_Missense_Mutation_p.Y716C|CTNNB1_uc003ckr.2_Missense_Mutation_p.Y716C|CTNNB1_uc011azf.1_Missense_Mutation_p.Y709C|CTNNB1_uc011azg.1_Missense_Mutation_p.Y644C	NM_001904	NP_001895	P35222	CTNB1_HUMAN	beta-catenin	716					adherens junction assembly|androgen receptor signaling pathway|branching involved in ureteric bud morphogenesis|canonical Wnt receptor signaling pathway involved in negative regulation of apoptosis|canonical Wnt receptor signaling pathway involved in positive regulation of epithelial to mesenchymal transition|cell-cell adhesion|cell-matrix adhesion|cellular component disassembly involved in apoptosis|cellular response to growth factor stimulus|cellular response to indole-3-methanol|central nervous system vasculogenesis|cytoskeletal anchoring at plasma membrane|determination of dorsal/ventral asymmetry|dorsal/ventral axis specification|ectoderm development|embryonic axis specification|embryonic foregut morphogenesis|embryonic leg joint morphogenesis|endodermal cell fate commitment|endothelial tube morphogenesis|epithelial to mesenchymal transition|gastrulation with mouth forming second|glial cell fate determination|hair follicle morphogenesis|hair follicle placode formation|hindbrain development|liver development|lung cell differentiation|lung induction|lung-associated mesenchyme development|male genitalia development|mesenchymal cell proliferation involved in lung development|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of cell proliferation|negative regulation of chondrocyte differentiation|negative regulation of heart induction by canonical Wnt receptor signaling pathway|negative regulation of osteoclast differentiation|negative regulation of transcription from RNA polymerase II promoter|nephron tubule formation|odontogenesis of dentine-containing tooth|oocyte development|pancreas development|positive regulation of anti-apoptosis|positive regulation of apoptosis|positive regulation of branching involved in lung morphogenesis|positive regulation of epithelial cell proliferation involved in prostate gland development|positive regulation of fibroblast growth factor receptor signaling pathway|positive regulation of heparan sulfate proteoglycan biosynthetic process|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of MAPKKK cascade|positive regulation of muscle cell differentiation|positive regulation of osteoblast differentiation|positive regulation of transcription from RNA polymerase II promoter|protein localization at cell surface|proximal/distal pattern formation|regulation of angiogenesis|regulation of calcium ion import|regulation of centriole-centriole cohesion|regulation of centromeric sister chromatid cohesion|regulation of fibroblast proliferation|regulation of nephron tubule epithelial cell differentiation|regulation of protein localization at cell surface|regulation of smooth muscle cell proliferation|regulation of T cell proliferation|renal inner medulla development|renal outer medulla development|renal vesicle formation|response to drug|response to estradiol stimulus|Schwann cell proliferation|smooth muscle cell differentiation|synapse organization|synaptic vesicle transport|T cell differentiation in thymus|thymus development|trachea formation	APC-Axin-1-beta-catenin complex|Axin-APC-beta-catenin-GSK3B complex|beta-catenin-TCF7L2 complex|catenin complex|cell cortex|cell-substrate adherens junction|centrosome|dendritic shaft|desmosome|fascia adherens|internal side of plasma membrane|lamellipodium|lateral plasma membrane|microvillus membrane|perinuclear region of cytoplasm|protein-DNA complex|synapse|transcription factor complex|Z disc|zonula adherens	alpha-catenin binding|androgen receptor binding|cadherin binding|estrogen receptor binding|I-SMAD binding|ion channel binding|protein binding|protein C-terminus binding|protein kinase binding|protein phosphatase binding|R-SMAD binding|RPTP-like protein binding|signal transducer activity|specific RNA polymerase II transcription factor activity|structural molecule activity|transcription coactivator activity|transcription regulatory region DNA binding		CTNNB1/PLAG1(60)	liver(806)|soft_tissue(609)|large_intestine(243)|endometrium(222)|kidney(172)|stomach(157)|central_nervous_system(139)|ovary(104)|skin(97)|pancreas(91)|adrenal_gland(85)|pituitary(81)|salivary_gland(62)|haematopoietic_and_lymphoid_tissue(57)|thyroid(55)|biliary_tract(41)|lung(38)|prostate(24)|bone(20)|small_intestine(17)|cervix(9)|parathyroid(9)|urinary_tract(8)|breast(7)|oesophagus(5)|NS(3)|pleura(2)|upper_aerodigestive_tract(2)|eye(1)	3166				KIRC - Kidney renal clear cell carcinoma(284;0.0028)|Kidney(284;0.00294)	Lithium(DB01356)	GATCCTAGCTATCGTTCTTTT	0.493		15	H|Mis|T	PLAG1	colorectal|cvarian| hepatoblastoma|others|pleomorphic salivary adenoma				Pilomatrixoma_Familial_Clustering_of				4	105	---	---	---	---	0	0	0.217242	0	0
MEP1A	4224	broad.mit.edu	37	6	46766859	46766859	+	Missense_Mutation	SNP	T	C	C			TCGA-E3-A3E5-01A-11D-A20C-08	TCGA-E3-A3E5-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4c3a335-7c74-45ed-8b36-50ce11f7ac8e	599a6a1a-9973-4054-acf4-d987bdda59c1	g.chr6:46766859T>C	uc010jzh.1	+	5	245	c.203T>C	c.(202-204)CTG>CCG	p.L68P	MEP1A_uc011dwg.1_5'UTR|MEP1A_uc011dwh.1_Missense_Mutation_p.L96P|MEP1A_uc011dwi.1_5'UTR	NM_005588	NP_005579	Q16819	MEP1A_HUMAN	meprin A alpha precursor	68	Extracellular (Potential).|Metalloprotease.				digestion|proteolysis	extracellular space|integral to plasma membrane|soluble fraction	metalloendopeptidase activity|zinc ion binding			pancreas(2)|ovary(1)	3			Lung(136;0.192)			AGAAATGGCCTGAGAGACCCA	0.428													3	126	---	---	---	---	0	0	0.150653	0	0
ASCC3	10973	broad.mit.edu	37	6	101253689	101253689	+	Missense_Mutation	SNP	A	G	G			TCGA-E3-A3E5-01A-11D-A20C-08	TCGA-E3-A3E5-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4c3a335-7c74-45ed-8b36-50ce11f7ac8e	599a6a1a-9973-4054-acf4-d987bdda59c1	g.chr6:101253689A>G	uc003pqk.2	-	5	1198	c.869T>C	c.(868-870)ATT>ACT	p.I290T	ASCC3_uc011eai.1_Missense_Mutation_p.I192T|ASCC3_uc003pql.2_Missense_Mutation_p.I290T	NM_006828	NP_006819	Q8N3C0	HELC1_HUMAN	activating signal cointegrator 1 complex subunit	290					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|microtubule cytoskeleton	ATP binding|ATP-dependent helicase activity|nucleic acid binding			ovary(5)|skin(1)	6		all_cancers(76;1.45e-07)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(87;0.00149)|Hepatocellular(1;0.0893)|Colorectal(196;0.13)		BRCA - Breast invasive adenocarcinoma(108;0.0539)|all cancers(137;0.103)|GBM - Glioblastoma multiforme(226;0.199)		TCTATCCACAATTGTAATTCT	0.328													21	20	---	---	---	---	0	0	0.608945	0	0
CDC14C	168448	broad.mit.edu	37	7	48965435	48965435	+	Silent	SNP	C	T	T	rs145329673	by1000genomes	TCGA-E3-A3E5-01A-11D-A20C-08	TCGA-E3-A3E5-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4c3a335-7c74-45ed-8b36-50ce11f7ac8e	599a6a1a-9973-4054-acf4-d987bdda59c1	g.chr7:48965435C>T	uc010kyv.1	+	1	1279	c.1167C>T	c.(1165-1167)GAC>GAT	p.D389D		NR_003595				SubName: Full=Putative uncharacterized protein MGC26484;												0						ACAGTGATGACGACGAAATCA	0.463													5	30	---	---	---	---	0	0	0.278610	0	0
DYNC1I1	1780	broad.mit.edu	37	7	95664979	95664979	+	Missense_Mutation	SNP	G	A	A			TCGA-E3-A3E5-01A-11D-A20C-08	TCGA-E3-A3E5-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4c3a335-7c74-45ed-8b36-50ce11f7ac8e	599a6a1a-9973-4054-acf4-d987bdda59c1	g.chr7:95664979G>A	uc003uoc.3	+	13	1607	c.1330G>A	c.(1330-1332)GGA>AGA	p.G444R	DYNC1I1_uc003uod.3_Missense_Mutation_p.G427R|DYNC1I1_uc003uob.2_Missense_Mutation_p.G407R|DYNC1I1_uc003uoe.3_Missense_Mutation_p.G424R|DYNC1I1_uc010lfl.2_Missense_Mutation_p.G433R	NM_004411	NP_004402	O14576	DC1I1_HUMAN	dynein, cytoplasmic 1, intermediate chain 1	444	WD 4.				vesicle transport along microtubule	condensed chromosome kinetochore|cytoplasmic dynein complex|microtubule|perinuclear region of cytoplasm|spindle pole|vesicle	microtubule binding|microtubule motor activity			ovary(3)|kidney(1)	4	all_cancers(62;9.39e-10)|all_epithelial(64;2.28e-09)|Lung NSC(181;0.165)|all_lung(186;0.191)		STAD - Stomach adenocarcinoma(171;0.0957)			CGCTGTTACCGGAATGGCTTT	0.493													4	181	---	---	---	---	0	0	0.184627	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-E3-A3E5-01A-11D-A20C-08	TCGA-E3-A3E5-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4c3a335-7c74-45ed-8b36-50ce11f7ac8e	599a6a1a-9973-4054-acf4-d987bdda59c1	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				42	60	---	---	---	---	0	0	0.859065	0	0
TEX15	56154	broad.mit.edu	37	8	30695491	30695491	+	Missense_Mutation	SNP	T	C	C			TCGA-E3-A3E5-01A-11D-A20C-08	TCGA-E3-A3E5-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4c3a335-7c74-45ed-8b36-50ce11f7ac8e	599a6a1a-9973-4054-acf4-d987bdda59c1	g.chr8:30695491T>C	uc003xil.2	-	3	7160	c.7160A>G	c.(7159-7161)AAG>AGG	p.K2387R		NM_031271	NP_112561	Q9BXT5	TEX15_HUMAN	testis expressed 15	2387										ovary(3)|upper_aerodigestive_tract(2)|skin(2)	7				KIRC - Kidney renal clear cell carcinoma(542;0.0918)|Kidney(114;0.111)		CATTTCAACCTTTTTTGGCGT	0.388													3	157	---	---	---	---	0	0	0.115264	0	0
MMP16	4325	broad.mit.edu	37	8	89053760	89053760	+	Missense_Mutation	SNP	A	T	T			TCGA-E3-A3E5-01A-11D-A20C-08	TCGA-E3-A3E5-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4c3a335-7c74-45ed-8b36-50ce11f7ac8e	599a6a1a-9973-4054-acf4-d987bdda59c1	g.chr8:89053760A>T	uc003yeb.3	-	10	2035	c.1753T>A	c.(1753-1755)TTC>ATC	p.F585I		NM_005941	NP_005932	P51512	MMP16_HUMAN	matrix metalloproteinase 16 isoform 1	585	Helical; (Potential).				collagen catabolic process|proteolysis	cell surface|integral to plasma membrane|proteinaceous extracellular matrix	calcium ion binding|enzyme activator activity|metalloendopeptidase activity|zinc ion binding			upper_aerodigestive_tract(2)|ovary(2)|central_nervous_system(1)|urinary_tract(1)|skin(1)|kidney(1)	8						TTGAACTGGAACACAGTGTAA	0.443													4	119	---	---	---	---	0	0	0.184627	0	0
TEK	7010	broad.mit.edu	37	9	27192585	27192585	+	Missense_Mutation	SNP	C	G	G			TCGA-E3-A3E5-01A-11D-A20C-08	TCGA-E3-A3E5-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4c3a335-7c74-45ed-8b36-50ce11f7ac8e	599a6a1a-9973-4054-acf4-d987bdda59c1	g.chr9:27192585C>G	uc003zqi.3	+	11	2030	c.1588C>G	c.(1588-1590)CCT>GCT	p.P530A	TEK_uc011lno.1_Missense_Mutation_p.P487A|TEK_uc011lnp.1_Missense_Mutation_p.P383A|TEK_uc003zqj.1_Missense_Mutation_p.P464A	NM_000459	NP_000450	Q02763	TIE2_HUMAN	TEK tyrosine kinase, endothelial precursor	530	Fibronectin type-III 1.|Extracellular (Potential).				angiogenesis|blood coagulation|cell-cell signaling|leukocyte migration|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein kinase B signaling cascade|protein oligomerization|transmembrane receptor protein tyrosine kinase signaling pathway	apical plasma membrane|basolateral plasma membrane|cell surface|integral to plasma membrane|membrane raft|microvillus	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity			ovary(3)|central_nervous_system(3)|breast(3)|lung(2)|kidney(1)	12		all_neural(11;7.57e-10)|Myeloproliferative disorder(762;0.0255)		Lung(218;4.08e-05)|LUSC - Lung squamous cell carcinoma(38;0.00027)		GGAAGGGCATCCTGGACCTGT	0.517													4	113	---	---	---	---	0	0	0.184627	0	0
PALM2-AKAP2	445815	broad.mit.edu	37	9	112705452	112705452	+	Missense_Mutation	SNP	A	G	G			TCGA-E3-A3E5-01A-11D-A20C-08	TCGA-E3-A3E5-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4c3a335-7c74-45ed-8b36-50ce11f7ac8e	599a6a1a-9973-4054-acf4-d987bdda59c1	g.chr9:112705452A>G	uc004bei.2	+	7	1175	c.983A>G	c.(982-984)AAG>AGG	p.K328R	PALM2_uc004bef.2_Missense_Mutation_p.K330R|PALM2_uc004beg.2_Missense_Mutation_p.K296R|PALM2_uc004beh.3_Missense_Mutation_p.K328R|PALM2-AKAP2_uc004bek.3_Intron|PALM2-AKAP2_uc004bej.3_Intron|PALM2-AKAP2_uc004bel.1_Intron	NM_001136562	NP_001130034	Q9Y2D5	AKAP2_HUMAN	A kinase (PRKA) anchor protein 2 isoform 2	Error:Variant_position_missing_in_Q9Y2D5_after_alignment							enzyme binding			ovary(3)|central_nervous_system(2)|skin(1)	6						GAGACGAAAAAGGTGCTAGGC	0.498													3	113	---	---	---	---	0	0	0.150653	0	0
GAPVD1	26130	broad.mit.edu	37	9	128099547	128099547	+	Missense_Mutation	SNP	C	T	T			TCGA-E3-A3E5-01A-11D-A20C-08	TCGA-E3-A3E5-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4c3a335-7c74-45ed-8b36-50ce11f7ac8e	599a6a1a-9973-4054-acf4-d987bdda59c1	g.chr9:128099547C>T	uc010mwx.2	+	17	2880	c.2554C>T	c.(2554-2556)CAT>TAT	p.H852Y	GAPVD1_uc011lzs.1_Missense_Mutation_p.H852Y|GAPVD1_uc004bpp.2_Missense_Mutation_p.H879Y|GAPVD1_uc004bpq.2_Missense_Mutation_p.H852Y|GAPVD1_uc004bpr.2_Missense_Mutation_p.H831Y|GAPVD1_uc004bps.2_Missense_Mutation_p.H852Y|GAPVD1_uc010mwy.1_Missense_Mutation_p.H685Y	NM_015635	NP_056450	Q14C86	GAPD1_HUMAN	GTPase activating protein and VPS9 domains 1	852					endocytosis|regulation of protein transport|regulation of small GTPase mediated signal transduction|signal transduction	cytosol|endosome|membrane	GTPase activating protein binding|GTPase activator activity|guanyl-nucleotide exchange factor activity			ovary(2)|central_nervous_system(1)|skin(1)	4						TAGGCCATCGCATCCACCACC	0.299													22	37	---	---	---	---	0	0	0.639603	0	0
Unknown	0	broad.mit.edu	37	MT	14104	14104	+	RNA	SNP	T	C	C			TCGA-E3-A3E5-01A-11D-A20C-08	TCGA-E3-A3E5-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4c3a335-7c74-45ed-8b36-50ce11f7ac8e	599a6a1a-9973-4054-acf4-d987bdda59c1	g.chrM:14104T>C	uc004cox.3	+	1		c.1768T>C			uc004coy.2_5'Flank|uc004coz.1_5'Flank					Homo sapiens NADH dehydrogenase subunit 5 (MTND5) mRNA, RNA 5, complete cds; mitochondrial gene for mitochondrial product.																		TTTACTTCCTCTCTTTCTTCT	0.383													31	4	---	---	---	---	0	0	0.840704	0	0
Unknown	0	broad.mit.edu	37	1	4204666	4204667	+	IGR	DEL	CA	-	-			TCGA-E3-A3E5-01A-11D-A20C-08	TCGA-E3-A3E5-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4c3a335-7c74-45ed-8b36-50ce11f7ac8e	599a6a1a-9973-4054-acf4-d987bdda59c1	g.chr1:4204666_4204667delCA								LOC100133612 (370789 upstream) : LOC284661 (267444 downstream)																							ccaccaccatcacaccattatc	0.025													4	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	1	29780291	29780292	+	IGR	INS	-	CTC	CTC			TCGA-E3-A3E5-01A-11D-A20C-08	TCGA-E3-A3E5-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4c3a335-7c74-45ed-8b36-50ce11f7ac8e	599a6a1a-9973-4054-acf4-d987bdda59c1	g.chr1:29780291_29780292insCTC								PTPRU (126976 upstream) : None (None downstream)																							ctcctattcatctcctcctcct	0.238													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	125014795	125014797	+	IGR	DEL	CAT	-	-			TCGA-E3-A3E5-01A-11D-A20C-08	TCGA-E3-A3E5-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4c3a335-7c74-45ed-8b36-50ce11f7ac8e	599a6a1a-9973-4054-acf4-d987bdda59c1	g.chr10:125014795_125014797delCAT								BUB3 (89909 upstream) : GPR26 (411074 downstream)																							acaccaccaccatcatcacacca	0.000													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	132587304	132587305	+	IGR	INS	-	A	A			TCGA-E3-A3E5-01A-11D-A20C-08	TCGA-E3-A3E5-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4c3a335-7c74-45ed-8b36-50ce11f7ac8e	599a6a1a-9973-4054-acf4-d987bdda59c1	g.chr10:132587304_132587305insA								GLRX3 (604520 upstream) : TCERG1L (303351 downstream)																							gggagcaggggagcaggggagc	0.000													3	5	---	---	---	---					
CEP290	80184	broad.mit.edu	37	12	88512304	88512305	+	Frame_Shift_Ins	INS	-	T	T	rs77980773		TCGA-E3-A3E5-01A-11D-A20C-08	TCGA-E3-A3E5-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4c3a335-7c74-45ed-8b36-50ce11f7ac8e	599a6a1a-9973-4054-acf4-d987bdda59c1	g.chr12:88512304_88512305insT	uc001tar.2	-	17	2010_2011	c.1666_1667insA	c.(1666-1668)ATTfs	p.I556fs	CEP290_uc001tat.2_Frame_Shift_Ins_p.I318fs|CEP290_uc009zsl.1_RNA	NM_025114	NP_079390	O15078	CE290_HUMAN	centrosomal protein 290kDa	556	Potential.				cilium assembly|eye photoreceptor cell development|G2/M transition of mitotic cell cycle|hindbrain development|otic vesicle formation|positive regulation of transcription, DNA-dependent|pronephros development|protein transport	cell surface|centrosome|cytosol|nucleus|photoreceptor connecting cilium	protein binding			ovary(5)|breast(1)|pancreas(1)	7						CATTTGACGAATTTTTTTTTTC	0.312													4	4	---	---	---	---					
CMKLR1	1240	broad.mit.edu	37	12	108735901	108735903	+	5'Flank	DEL	GAA	-	-			TCGA-E3-A3E5-01A-11D-A20C-08	TCGA-E3-A3E5-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4c3a335-7c74-45ed-8b36-50ce11f7ac8e	599a6a1a-9973-4054-acf4-d987bdda59c1	g.chr12:108735901_108735903delGAA	uc001tmw.2	-						CMKLR1_uc001tmv.2_5'Flank|CMKLR1_uc009zuv.2_5'Flank	NM_001142343	NP_001135815	Q99788	CML1_HUMAN	chemokine-like receptor 1 isoform a						chemotaxis|immune response|negative regulation of interleukin-12 production|negative regulation of NF-kappaB transcription factor activity|positive regulation of macrophage chemotaxis|regulation of calcium-mediated signaling|skeletal system development	integral to plasma membrane	chemokine receptor activity			lung(3)|ovary(1)|pancreas(1)	5						agaggaggaggaaggaggaagag	0.010													3	6	---	---	---	---					
CHD8	57680	broad.mit.edu	37	14	21854023	21854025	+	In_Frame_Del	DEL	GGT	-	-			TCGA-E3-A3E5-01A-11D-A20C-08	TCGA-E3-A3E5-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4c3a335-7c74-45ed-8b36-50ce11f7ac8e	599a6a1a-9973-4054-acf4-d987bdda59c1	g.chr14:21854023_21854025delGGT	uc001was.1	-	38	6750_6752	c.6656_6658delACC	c.(6655-6660)CACCCC>CCC	p.H2219del	CHD8_uc001war.1_In_Frame_Del_p.H2115del|SUPT16H_uc001wao.2_5'Flank|SUPT16H_uc001wap.2_5'Flank|SUPT16H_uc001waq.1_5'Flank	NM_020920	NP_065971	Q9HCK8	CHD8_HUMAN	chromodomain helicase DNA binding protein 8	2498	His-rich.				ATP-dependent chromatin remodeling|canonical Wnt receptor signaling pathway|negative regulation of transcription, DNA-dependent|negative regulation of Wnt receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase III promoter|transcription, DNA-dependent	MLL1 complex	ATP binding|beta-catenin binding|DNA binding|DNA helicase activity|DNA-dependent ATPase activity|methylated histone residue binding|p53 binding			ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|breast(1)|skin(1)	10	all_cancers(95;0.00121)		Epithelial(56;2.55e-06)|all cancers(55;1.73e-05)	GBM - Glioblastoma multiforme(265;0.00424)		tgggggtgggggtggtggtggtg	0.424													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	15	78029816	78029817	+	IGR	DEL	AG	-	-			TCGA-E3-A3E5-01A-11D-A20C-08	TCGA-E3-A3E5-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4c3a335-7c74-45ed-8b36-50ce11f7ac8e	599a6a1a-9973-4054-acf4-d987bdda59c1	g.chr15:78029816_78029817delAG								LINGO1 (41341 upstream) : LOC645752 (176742 downstream)																							agggagaggaagagagagagag	0.040													2	4	---	---	---	---					
FAM18B	51030	broad.mit.edu	37	17	18682678	18682678	+	5'Flank	DEL	T	-	-			TCGA-E3-A3E5-01A-11D-A20C-08	TCGA-E3-A3E5-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4c3a335-7c74-45ed-8b36-50ce11f7ac8e	599a6a1a-9973-4054-acf4-d987bdda59c1	g.chr17:18682678delT	uc002gum.2	+							NM_016078	NP_057162	Q9NYZ1	F18B1_HUMAN	hypothetical protein LOC51030							integral to membrane					0				UCEC - Uterine corpus endometrioid carcinoma (53;0.0872)|READ - Rectum adenocarcinoma(1115;0.0967)		CTATTTGGCCTTTTTTTTTTT	0.343													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	75638024	75638026	+	IGR	DEL	AGG	-	-			TCGA-E3-A3E5-01A-11D-A20C-08	TCGA-E3-A3E5-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4c3a335-7c74-45ed-8b36-50ce11f7ac8e	599a6a1a-9973-4054-acf4-d987bdda59c1	g.chr17:75638024_75638026delAGG								SEPT9 (141348 upstream) : FLJ45079 (237083 downstream)																							gaggaagggaaggaggaggagga	0.163													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	18	74504731	74504731	+	IGR	DEL	G	-	-	rs5826478		TCGA-E3-A3E5-01A-11D-A20C-08	TCGA-E3-A3E5-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4c3a335-7c74-45ed-8b36-50ce11f7ac8e	599a6a1a-9973-4054-acf4-d987bdda59c1	g.chr18:74504731delG								LOC284276 (232948 upstream) : ZNF236 (31385 downstream)																							TTGGGATGGTGGGGGGAGAGC	0.602													5	1	---	---	---	---					
ATP5SL	55101	broad.mit.edu	37	19	41939275	41939276	+	Frame_Shift_Del	DEL	GA	-	-			TCGA-E3-A3E5-01A-11D-A20C-08	TCGA-E3-A3E5-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4c3a335-7c74-45ed-8b36-50ce11f7ac8e	599a6a1a-9973-4054-acf4-d987bdda59c1	g.chr19:41939275_41939276delGA	uc002oqw.1	-	5	503_504	c.497_498delTC	c.(496-498)CTCfs	p.L166fs	CYP2F1_uc010xvw.1_Intron|ATP5SL_uc002oqu.1_RNA|ATP5SL_uc002oqv.2_Frame_Shift_Del_p.L172fs|ATP5SL_uc010xwa.1_Intron|ATP5SL_uc002oqx.1_Frame_Shift_Del_p.L139fs|ATP5SL_uc002oqy.1_Intron|ATP5SL_uc002oqz.1_Intron|ATP5SL_uc002ora.1_Frame_Shift_Del_p.L153fs|ATP5SL_uc010xwb.1_Frame_Shift_Del_p.L145fs	NM_018035	NP_060505	Q9NW81	AT5SL_HUMAN	ATP5S-like	166										large_intestine(1)|breast(1)	2						AGAGGCGGCTGAGACACCAGTC	0.683													10	97	---	---	---	---					
Unknown	0	broad.mit.edu	37	20	29449706	29449707	+	IGR	INS	-	AAA	AAA	rs147830479	by1000genomes	TCGA-E3-A3E5-01A-11D-A20C-08	TCGA-E3-A3E5-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4c3a335-7c74-45ed-8b36-50ce11f7ac8e	599a6a1a-9973-4054-acf4-d987bdda59c1	g.chr20:29449706_29449707insAAA								None (None upstream) : FRG1B (162172 downstream)																							GAGTTTGTCAGAAAAAAAAAAC	0.292													3	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	20	55285975	55285986	+	IGR	DEL	TCCTCTCCCTCC	-	-			TCGA-E3-A3E5-01A-11D-A20C-08	TCGA-E3-A3E5-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4c3a335-7c74-45ed-8b36-50ce11f7ac8e	599a6a1a-9973-4054-acf4-d987bdda59c1	g.chr20:55285975_55285986delTCCTCTCCCTCC								TFAP2C (71639 upstream) : BMP7 (457823 downstream)																							ctcctctccttcctctccctcctcctctccct	0.000													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	49113504	49113504	+	IGR	DEL	A	-	-			TCGA-E3-A3E5-01A-11D-A20C-08	TCGA-E3-A3E5-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4c3a335-7c74-45ed-8b36-50ce11f7ac8e	599a6a1a-9973-4054-acf4-d987bdda59c1	g.chr4:49113504delA								CWH43 (49411 upstream) : None (None downstream)																							attccattccattccattcca	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	41472771	41472772	+	5'Flank	INS	-	C	C	rs151305500	by1000genomes	TCGA-E3-A3E5-01A-11D-A20C-08	TCGA-E3-A3E5-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4c3a335-7c74-45ed-8b36-50ce11f7ac8e	599a6a1a-9973-4054-acf4-d987bdda59c1	g.chr6:41472771_41472772insC	uc011due.1	-						uc003oqk.1_Intron					DQ601873																		cctcctTCGTACCCCCCCCCGC	0.515													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	63033168	63033170	+	IGR	DEL	GAG	-	-			TCGA-E3-A3E5-01A-11D-A20C-08	TCGA-E3-A3E5-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4c3a335-7c74-45ed-8b36-50ce11f7ac8e	599a6a1a-9973-4054-acf4-d987bdda59c1	g.chr7:63033168_63033170delGAG								LOC100287704 (221017 upstream) : ZNF727 (472651 downstream)																							ggaggaggatgaggaggaggagg	0.286													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	101391469	101391471	+	IGR	DEL	GAG	-	-			TCGA-E3-A3E5-01A-11D-A20C-08	TCGA-E3-A3E5-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4c3a335-7c74-45ed-8b36-50ce11f7ac8e	599a6a1a-9973-4054-acf4-d987bdda59c1	g.chr7:101391469_101391471delGAG								MYL10 (118893 upstream) : CUX1 (67821 downstream)																							GTCACaggaagaggaggaggagg	0.562													2	4	---	---	---	---					
NCS1	23413	broad.mit.edu	37	9	132934608	132934608	+	5'Flank	DEL	G	-	-			TCGA-E3-A3E5-01A-11D-A20C-08	TCGA-E3-A3E5-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4c3a335-7c74-45ed-8b36-50ce11f7ac8e	599a6a1a-9973-4054-acf4-d987bdda59c1	g.chr9:132934608delG	uc004bzi.2	+							NM_014286	NP_055101	P62166	NCS1_HUMAN	frequenin homolog isoform 1						negative regulation of calcium ion transport via voltage-gated calcium channel activity|regulation of neuron projection development	cell junction|Golgi cisterna membrane|perinuclear region of cytoplasm|postsynaptic density|postsynaptic membrane	calcium ion binding|protein binding				0						gcgggcgggaggggggaggcg	0.104													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	X	628645	628645	+	IGR	DEL	C	-	-			TCGA-E3-A3E5-01A-11D-A20C-08	TCGA-E3-A3E5-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4c3a335-7c74-45ed-8b36-50ce11f7ac8e	599a6a1a-9973-4054-acf4-d987bdda59c1	g.chrX:628645delC								SHOX (8500 upstream) : CRLF2 (686242 downstream)																							ctttccccctcccccatccca	0.000													4	7	---	---	---	---					
