Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
RACGAP1P	83956	broad.mit.edu	37	12	45457267	45457267	+	RNA	SNP	T	C	C			TCGA-EL-A3CX-01A-11D-A19J-08	TCGA-EL-A3CX-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0a33fd2-085c-488b-b843-2ca97c85a5cb	180bbc51-bde0-4489-ad9d-ec66b632839b	g.chr12:45457267T>C	uc001rol.2	-	1		c.1928A>G				NR_026583				Homo sapiens FKSG42 (FKSG42) mRNA, complete cds.												0						CACTTGAGCATTGAAGAAGCA	0.463000													19	19	---	---	---	---	0	0	0.000958276	0	0
FHOD3	80206	broad.mit.edu	37	18	34326989	34326989	+	Missense_Mutation	SNP	G	A	A			TCGA-EL-A3CX-01A-11D-A19J-08	TCGA-EL-A3CX-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0a33fd2-085c-488b-b843-2ca97c85a5cb	180bbc51-bde0-4489-ad9d-ec66b632839b	g.chr18:34326989G>A	uc002kzt.1	+	20	3644	c.3547G>A	c.(3547-3549)GCA>ACA	p.A1183T	FHOD3_uc002kzs.1_Missense_Mutation_p.A1200T|FHOD3_uc010dmz.1_Missense_Mutation_p.A915T|FHOD3_uc010dnb.1_Missense_Mutation_p.A179T	NM_025135	NP_079411	Q2V2M9	FHOD3_HUMAN	formin homology 2 domain containing 3	1183	FH2.				actin cytoskeleton organization	cytoplasm|cytoskeleton	actin binding			skin(3)|large_intestine(2)|breast(2)|ovary(1)	8		all_epithelial(2;0.0181)|Colorectal(2;0.0195)				CAAGGCAATTGCAAAACATGA	0.373000													34	48	---	---	---	---	0	0	0.000953801	0	0
OR5H14	403273	broad.mit.edu	37	3	97868995	97868995	+	Missense_Mutation	SNP	G	A	A	rs148799830		TCGA-EL-A3CX-01A-11D-A19J-08	TCGA-EL-A3CX-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0a33fd2-085c-488b-b843-2ca97c85a5cb	180bbc51-bde0-4489-ad9d-ec66b632839b	g.chr3:97868995G>A	uc003dsg.1	+	1	766	c.766G>A	c.(766-768)GCC>ACC	p.A256T		NM_001005514	NP_001005514	A6NHG9	O5H14_HUMAN	olfactory receptor, family 5, subfamily H,	256	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TGGGCCCCTCGCCTTCATGTA	0.413000													26	29	---	---	---	---	0	0	0.00106085	0	0
OR5K4	403278	broad.mit.edu	37	3	98073450	98073450	+	Silent	SNP	T	C	C			TCGA-EL-A3CX-01A-11D-A19J-08	TCGA-EL-A3CX-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0a33fd2-085c-488b-b843-2ca97c85a5cb	180bbc51-bde0-4489-ad9d-ec66b632839b	g.chr3:98073450T>C	uc011bgv.1	+	1	753	c.753T>C	c.(751-753)TTT>TTC	p.F251F		NM_001005517	NP_001005517	A6NMS3	OR5K4_HUMAN	olfactory receptor, family 5, subfamily K,	251	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1						TCTCAATATTTTACATTTGTC	0.363000													54	49	---	---	---	---	0	0	0.000781405	0	0
TMCC1	23023	broad.mit.edu	37	3	129389482	129389482	+	Missense_Mutation	SNP	G	C	C			TCGA-EL-A3CX-01A-11D-A19J-08	TCGA-EL-A3CX-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0a33fd2-085c-488b-b843-2ca97c85a5cb	180bbc51-bde0-4489-ad9d-ec66b632839b	g.chr3:129389482G>C	uc003emz.3	-	5	1703	c.1202C>G	c.(1201-1203)GCG>GGG	p.A401G	TMCC1_uc003emy.3_Missense_Mutation_p.A77G|TMCC1_uc011blc.1_Missense_Mutation_p.A222G|TMCC1_uc010htg.2_Missense_Mutation_p.A287G	NM_001017395	NP_001017395	O94876	TMCC1_HUMAN	transmembrane and coiled-coil domain family 1	401						integral to membrane				skin(1)	1						AGCCTTCCCCGCATCATCCAC	0.483000													34	31	---	---	---	---	0	0	0.000270559	0	0
APC	324	broad.mit.edu	37	5	112116592	112116592	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EL-A3CX-01A-11D-A19J-08	TCGA-EL-A3CX-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0a33fd2-085c-488b-b843-2ca97c85a5cb	180bbc51-bde0-4489-ad9d-ec66b632839b	g.chr5:112116592C>T	uc010jby.2	+	6	1017	c.637C>T	c.(637-639)CGA>TGA	p.R213*	APC_uc011cvt.1_Nonsense_Mutation_p.R223*|APC_uc003kpz.3_Nonsense_Mutation_p.R213*|APC_uc003kpy.3_Nonsense_Mutation_p.R213*|APC_uc010jbz.2_Translation_Start_Site	NM_001127511	NP_001120983	P25054	APC_HUMAN	adenomatous polyposis coli	213	Leu-rich.|Potential.				canonical Wnt receptor signaling pathway|cell adhesion|cell cycle arrest|cell migration|cellular component disassembly involved in apoptosis|cytokinesis after mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cyclin-dependent protein kinase activity|negative regulation of microtubule depolymerization|positive regulation of apoptosis|positive regulation of cell migration|positive regulation of pseudopodium assembly|protein complex assembly|regulation of attachment of spindle microtubules to kinetochore|response to DNA damage stimulus|tight junction assembly	adherens junction|APC-Axin-1-beta-catenin complex|Axin-APC-beta-catenin-GSK3B complex|beta-catenin destruction complex|centrosome|cytosol|kinetochore|lamellipodium|lateral plasma membrane|nucleus|ruffle membrane|tight junction	beta-catenin binding|gamma-catenin binding|microtubule plus-end binding|protein kinase binding|protein kinase regulator activity	p.R213*(6)		large_intestine(2123)|stomach(123)|soft_tissue(55)|small_intestine(34)|breast(26)|pancreas(25)|urinary_tract(20)|lung(19)|thyroid(18)|liver(13)|central_nervous_system(10)|ovary(9)|skin(7)|upper_aerodigestive_tract(6)|adrenal_gland(6)|bone(6)|NS(5)|prostate(4)|endometrium(3)|kidney(1)|oesophagus(1)|biliary_tract(1)	2515		all_cancers(142;3.01e-27)|all_epithelial(76;2.3e-18)|all_hematologic(541;4.32e-09)|Ovarian(225;1.78e-06)|Lung NSC(167;0.000195)|Breast(839;0.000231)|all_lung(232;0.000247)|Colorectal(10;0.000355)|Prostate(80;0.00133)		OV - Ovarian serous cystadenocarcinoma(64;1.09e-113)|Epithelial(69;3.79e-112)|all cancers(49;1.67e-104)|BRCA - Breast invasive adenocarcinoma(61;0.00136)|COAD - Colon adenocarcinoma(37;0.00155)|Colorectal(14;0.00191)		TATGGAAAAACGAGCACAGGT	0.348000		12	D|Mis|N|F|S		colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS	colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS			Hereditary_Desmoid_Disease|Familial_Adenomatous_Polyposis|Turcot_syndrome	TSP Lung(16;0.13)			18	4	---	---	---	---	0	0	0.00074312	0	0
FLNC	2318	broad.mit.edu	37	7	128470999	128470999	+	Missense_Mutation	SNP	C	G	G			TCGA-EL-A3CX-01A-11D-A19J-08	TCGA-EL-A3CX-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0a33fd2-085c-488b-b843-2ca97c85a5cb	180bbc51-bde0-4489-ad9d-ec66b632839b	g.chr7:128470999C>G	uc003vnz.3	+	1	517	c.308C>G	c.(307-309)GCC>GGC	p.A103G	FLNC_uc003voa.3_Missense_Mutation_p.A103G	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	103	CH 1.|Actin-binding.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						GTGTCCGTGGCCCTCGAGTTC	0.652000													12	24	---	---	---	---	0	0	0.000978159	0	0
ARX	170302	broad.mit.edu	37	X	25031148	25031148	+	Missense_Mutation	SNP	C	G	G			TCGA-EL-A3CX-01A-11D-A19J-08	TCGA-EL-A3CX-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0a33fd2-085c-488b-b843-2ca97c85a5cb	180bbc51-bde0-4489-ad9d-ec66b632839b	g.chrX:25031148C>G	uc004dbp.3	-	2	1175	c.964G>C	c.(964-966)GGG>CGG	p.G322R		NM_139058	NP_620689	Q96QS3	ARX_HUMAN	aristaless related homeobox	322						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						TTCAGCAGCCCCTCCTCCGAG	0.652000													2	4	---	---	---	---	0	0	6.4e-05	0	0
Unknown	0	broad.mit.edu	37	14	74865395	74865396	+	IGR	DEL	CA	-	-			TCGA-EL-A3CX-01A-11D-A19J-08	TCGA-EL-A3CX-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0a33fd2-085c-488b-b843-2ca97c85a5cb	180bbc51-bde0-4489-ad9d-ec66b632839b	g.chr14:74865395_74865396delCA								C14orf115 (38685 upstream) : TMEM90A (7200 downstream)																							cacgtgcgtgcacacacacaca	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	15	23606281	23606282	+	5'Flank	INS	-	TTTTC	TTTTC			TCGA-EL-A3CX-01A-11D-A19J-08	TCGA-EL-A3CX-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0a33fd2-085c-488b-b843-2ca97c85a5cb	180bbc51-bde0-4489-ad9d-ec66b632839b	g.chr15:23606281_23606282insTTTTC	uc001ywe.2	-											DQ578839																		AGAGGAGGGTTttttcttttct	0.416													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	15	79155533	79155534	+	IGR	DEL	TT	-	-			TCGA-EL-A3CX-01A-11D-A19J-08	TCGA-EL-A3CX-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0a33fd2-085c-488b-b843-2ca97c85a5cb	180bbc51-bde0-4489-ad9d-ec66b632839b	g.chr15:79155533_79155534delTT								ADAMTS7 (51760 upstream) : MORF4L1 (9638 downstream)																							AAGCTTAATCTTTTTTTTTTTT	0.342													4	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	20555425	20555427	+	IGR	DEL	AGA	-	-			TCGA-EL-A3CX-01A-11D-A19J-08	TCGA-EL-A3CX-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0a33fd2-085c-488b-b843-2ca97c85a5cb	180bbc51-bde0-4489-ad9d-ec66b632839b	g.chr17:20555425_20555427delAGA								LGALS9B (184577 upstream) : CCDC144NL (211283 downstream)																							gaggaggaggagaaggaggagga	0.532													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	58727943	58727943	+	IGR	DEL	A	-	-			TCGA-EL-A3CX-01A-11D-A19J-08	TCGA-EL-A3CX-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0a33fd2-085c-488b-b843-2ca97c85a5cb	180bbc51-bde0-4489-ad9d-ec66b632839b	g.chr19:58727943delA								ZNF274 (3016 upstream) : ZNF544 (12127 downstream)																							TAATGCTTACAAAAAAAAATG	0.398													3	4	---	---	---	---					
RGPD3	653489	broad.mit.edu	37	2	107041534	107041534	+	Frame_Shift_Del	DEL	A	-	-			TCGA-EL-A3CX-01A-11D-A19J-08	TCGA-EL-A3CX-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0a33fd2-085c-488b-b843-2ca97c85a5cb	180bbc51-bde0-4489-ad9d-ec66b632839b	g.chr2:107041534delA	uc010ywi.1	-	20	2946	c.2889delT	c.(2887-2889)TTTfs	p.F963fs		NM_001144013	NP_001137485	A6NKT7	RGPD3_HUMAN	RANBP2-like and GRIP domain containing 3	963					intracellular transport		binding			ovary(1)	1						TTGTTTGGCCAAAAATCACAC	0.398													8	387	---	---	---	---					
Unknown	0	broad.mit.edu	37	22	16404839	16404839	+	IGR	DEL	A	-	-			TCGA-EL-A3CX-01A-11D-A19J-08	TCGA-EL-A3CX-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0a33fd2-085c-488b-b843-2ca97c85a5cb	180bbc51-bde0-4489-ad9d-ec66b632839b	g.chr22:16404839delA								POTEH (116902 upstream) : OR11H1 (43987 downstream)																							ATTCTCTGGGAAAAAAAAAAA	0.438													5	9	---	---	---	---					
MMRN1	22915	broad.mit.edu	37	4	90857420	90857421	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-EL-A3CX-01A-11D-A19J-08	TCGA-EL-A3CX-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0a33fd2-085c-488b-b843-2ca97c85a5cb	180bbc51-bde0-4489-ad9d-ec66b632839b	g.chr4:90857420_90857421delAG	uc003hst.2	+	6	2660_2661	c.2589_2590delAG	c.(2587-2592)CAAGACfs	p.Q863fs	MMRN1_uc010iku.2_Intron|MMRN1_uc011cds.1_Frame_Shift_Del_p.Q605fs	NM_007351	NP_031377	Q13201	MMRN1_HUMAN	multimerin 1	863_864	Potential.				cell adhesion|platelet activation|platelet degranulation	extracellular region|platelet alpha granule lumen				ovary(4)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;6.96e-05)		CTCGGTTGCAAGACATTGAGTC	0.366													16	34	---	---	---	---					
