Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
PTCHD2	57540	broad.mit.edu	37	1	11562935	11562935	+	Silent	SNP	C	T	T			TCGA-EL-A3D0-01A-12D-A202-08	TCGA-EL-A3D0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	4830f1eb-187d-428d-9652-492ef217f80d	d52a3420-e2c5-4188-bd7e-6f11cda56e45	g.chr1:11562935C>T	uc001ash.3	+	3	1435	c.1297C>T	c.(1297-1299)CTG>TTG	p.L433L	PTCHD2_uc001asi.1_Silent_p.L433L	NM_020780	NP_065831	Q9P2K9	PTHD2_HUMAN	patched domain containing 2	433	Extracellular (Potential).				cholesterol homeostasis|regulation of lipid transport|smoothened signaling pathway	endoplasmic reticulum|integral to membrane|nuclear membrane	hedgehog receptor activity			skin(3)|ovary(2)|pancreas(1)|breast(1)	7	Ovarian(185;0.249)	Lung NSC(185;4.16e-05)|all_lung(284;4.76e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.13e-07)|COAD - Colon adenocarcinoma(227;4.83e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000325)|Kidney(185;0.000877)|KIRC - Kidney renal clear cell carcinoma(229;0.00273)|STAD - Stomach adenocarcinoma(313;0.00766)|READ - Rectum adenocarcinoma(331;0.0549)		CGTGGCCATGCTGGCCAAGCA	0.522000													3	70	---	---	---	---	0	0	0.009096	0	0
MLLT10	8028	broad.mit.edu	37	10	22022990	22022990	+	Silent	SNP	T	C	C			TCGA-EL-A3D0-01A-12D-A202-08	TCGA-EL-A3D0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	4830f1eb-187d-428d-9652-492ef217f80d	d52a3420-e2c5-4188-bd7e-6f11cda56e45	g.chr10:22022990T>C	uc001iqs.2	+	21	3186	c.2838T>C	c.(2836-2838)CCT>CCC	p.P946P	MLLT10_uc001iqt.2_Silent_p.P930P|MLLT10_uc001iqv.2_RNA|MLLT10_uc001iqy.2_Silent_p.P930P|MLLT10_uc001ira.2_Silent_p.P387P|MLLT10_uc001irb.2_RNA	NM_004641	NP_004632	P55197	AF10_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	946					positive regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(1)|skin(1)	2						CCCAGAACCCTACCCCTCTCA	0.438000			T	MLL|PICALM|CDK6	AL								3	81	---	---	---	---	0	0	0.004672	0	0
PARG	8505	broad.mit.edu	37	10	51093329	51093329	+	Missense_Mutation	SNP	C	T	T			TCGA-EL-A3D0-01A-12D-A202-08	TCGA-EL-A3D0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	4830f1eb-187d-428d-9652-492ef217f80d	d52a3420-e2c5-4188-bd7e-6f11cda56e45	g.chr10:51093329C>T	uc001jif.2	-	8	2011	c.1750G>A	c.(1750-1752)GCA>ACA	p.A584T	PARG_uc001jih.2_Missense_Mutation_p.A584T|PARG_uc001jig.2_Missense_Mutation_p.A170T|PARG_uc010qgv.1_Intron|PARG_uc009xoi.2_Intron|PARG_uc010qgw.1_Missense_Mutation_p.A475T|PARG_uc009xoj.2_Missense_Mutation_p.A135T|PARG_uc010qgx.1_Missense_Mutation_p.A502T	NM_003631	NP_003622	Q86W56	PARG_HUMAN	poly (ADP-ribose) glycohydrolase	584					carbohydrate metabolic process	nucleus	poly(ADP-ribose) glycohydrolase activity			ovary(2)	2				Epithelial(53;0.213)		TGAGCTTCTGCTTCTTCAAGT	0.318000													4	61	---	---	---	---	0	0	0.009096	0	0
LRRC56	115399	broad.mit.edu	37	11	552111	552111	+	Missense_Mutation	SNP	C	G	G			TCGA-EL-A3D0-01A-12D-A202-08	TCGA-EL-A3D0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	4830f1eb-187d-428d-9652-492ef217f80d	d52a3420-e2c5-4188-bd7e-6f11cda56e45	g.chr11:552111C>G	uc010qvz.1	+	12	1565	c.1060C>G	c.(1060-1062)CTG>GTG	p.L354V		NM_198075	NP_932341	Q8IYG6	LRC56_HUMAN	leucine rich repeat containing 56	354										skin(1)	1		all_cancers(49;2.16e-06)|all_epithelial(84;0.000256)|Breast(177;0.00122)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;7.63e-28)|Epithelial(43;7.29e-27)|OV - Ovarian serous cystadenocarcinoma(40;7.15e-21)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0375)|LUSC - Lung squamous cell carcinoma(625;0.0703)		CCCCGAGCAGCTGCCCCAACA	0.677000													33	84	---	---	---	---	0	0	0.059317	0	0
CASP4	837	broad.mit.edu	37	11	104825694	104825694	+	Silent	SNP	C	T	T			TCGA-EL-A3D0-01A-12D-A202-08	TCGA-EL-A3D0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	4830f1eb-187d-428d-9652-492ef217f80d	d52a3420-e2c5-4188-bd7e-6f11cda56e45	g.chr11:104825694C>T	uc001pid.1	-	2	115	c.42G>A	c.(40-42)TTG>TTA	p.L14L	CASP4_uc001pib.1_5'UTR|CASP4_uc009yxg.1_5'UTR|CASP4_uc010rux.1_Silent_p.L14L|CASP4_uc010ruy.1_Silent_p.L14L	NM_001225	NP_001216	P49662	CASP4_HUMAN	caspase 4 isoform alpha precursor	14	CARD.				apoptosis|induction of apoptosis|proteolysis	intracellular	cysteine-type endopeptidase activity|protein binding			lung(2)|ovary(1)|skin(1)	4		Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0017)|Melanoma(852;0.0047)		BRCA - Breast invasive adenocarcinoma(274;0.000854)|Epithelial(105;0.00879)|all cancers(92;0.0357)		CCAGGGATTCCAACACCTTAA	0.388000													27	63	---	---	---	---	0	0	0.030593	0	0
MBD6	114785	broad.mit.edu	37	12	57921648	57921648	+	Missense_Mutation	SNP	A	G	G			TCGA-EL-A3D0-01A-12D-A202-08	TCGA-EL-A3D0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	4830f1eb-187d-428d-9652-492ef217f80d	d52a3420-e2c5-4188-bd7e-6f11cda56e45	g.chr12:57921648A>G	uc001soj.1	+	9	2478	c.2254A>G	c.(2254-2256)ACC>GCC	p.T752A	MBD6_uc001sok.1_Missense_Mutation_p.T619A|MBD6_uc001sol.1_RNA	NM_052897	NP_443129	Q96DN6	MBD6_HUMAN	methyl-CpG binding domain protein 6	752	Pro-rich.					chromosome|nucleus	chromatin binding|DNA binding			central_nervous_system(3)|ovary(1)	4						GTCTTCACTGACCAGCAGCCC	0.577000													3	238	---	---	---	---	0	0	0.004672	0	0
GCN1L1	10985	broad.mit.edu	37	12	120572142	120572142	+	Missense_Mutation	SNP	G	A	A			TCGA-EL-A3D0-01A-12D-A202-08	TCGA-EL-A3D0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	4830f1eb-187d-428d-9652-492ef217f80d	d52a3420-e2c5-4188-bd7e-6f11cda56e45	g.chr12:120572142G>A	uc001txo.2	-	53	7283	c.7270C>T	c.(7270-7272)CGG>TGG	p.R2424W		NM_006836	NP_006827	Q92616	GCN1L_HUMAN	GCN1 general control of amino-acid synthesis	2424	HEAT 22.				regulation of translation	ribosome	protein binding|translation factor activity, nucleic acid binding			ovary(4)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					ATGTTTTTCCGGATGACGGCA	0.592000													10	98	---	---	---	---	0	0	0.105934	0	0
CAMKK2	10645	broad.mit.edu	37	12	121706441	121706441	+	Missense_Mutation	SNP	G	A	A			TCGA-EL-A3D0-01A-12D-A202-08	TCGA-EL-A3D0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	4830f1eb-187d-428d-9652-492ef217f80d	d52a3420-e2c5-4188-bd7e-6f11cda56e45	g.chr12:121706441G>A	uc001tzu.2	-	5	749	c.625C>T	c.(625-627)CGT>TGT	p.R209C	CAMKK2_uc001tzt.2_Missense_Mutation_p.R209C|CAMKK2_uc001tzv.2_Missense_Mutation_p.R209C|CAMKK2_uc001tzw.2_Missense_Mutation_p.R209C|CAMKK2_uc001tzx.2_Missense_Mutation_p.R209C|CAMKK2_uc001tzy.2_Missense_Mutation_p.R209C|CAMKK2_uc001uaa.1_Missense_Mutation_p.R209C|CAMKK2_uc001uab.2_Missense_Mutation_p.R209C|CAMKK2_uc001uac.2_Missense_Mutation_p.R209C	NM_006549	NP_006540	Q96RR4	KKCC2_HUMAN	calcium/calmodulin-dependent protein kinase	209	RP domain.|Protein kinase.				calcium-mediated signaling|MAPKKK cascade|positive regulation of transcription, DNA-dependent|protein autophosphorylation|regulation of protein kinase activity	cytoplasm	ATP binding|calcium ion binding|calmodulin binding|calmodulin-dependent protein kinase activity|protein tyrosine kinase activity			lung(1)|large_intestine(1)|stomach(1)	3	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					CCAAACTCACGTGGAAAGCCG	0.488000													114	154	---	---	---	---	0	0	0.048971	0	0
DACH1	1602	broad.mit.edu	37	13	72204797	72204797	+	Silent	SNP	A	G	G			TCGA-EL-A3D0-01A-12D-A202-08	TCGA-EL-A3D0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	4830f1eb-187d-428d-9652-492ef217f80d	d52a3420-e2c5-4188-bd7e-6f11cda56e45	g.chr13:72204797A>G	uc010thn.1	-	4	1440	c.1017T>C	c.(1015-1017)GCT>GCC	p.A339A	DACH1_uc010tho.1_Silent_p.A339A|DACH1_uc010thp.1_Intron	NM_080759	NP_542937	Q9UI36	DACH1_HUMAN	dachshund homolog 1 isoform a	339	Interaction with SIX6 and HDAC3 (By similarity).				multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus	DNA binding|nucleotide binding|protein binding			breast(1)	1		Acute lymphoblastic leukemia(28;0.0503)|Breast(118;0.198)		GBM - Glioblastoma multiforme(99;0.00032)		TCATTGCTTcagcaatagctg	0.254000													3	208	---	---	---	---	0	0	0.004672	0	0
LRRC16B	90668	broad.mit.edu	37	14	24538027	24538027	+	Silent	SNP	C	T	T			TCGA-EL-A3D0-01A-12D-A202-08	TCGA-EL-A3D0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	4830f1eb-187d-428d-9652-492ef217f80d	d52a3420-e2c5-4188-bd7e-6f11cda56e45	g.chr14:24538027C>T	uc001wlj.2	+	38	3991	c.3834C>T	c.(3832-3834)CCC>CCT	p.P1278P	LRRC16B_uc001wlk.2_Silent_p.P331P|CPNE6_uc010tnv.1_5'Flank|CPNE6_uc001wlm.2_5'Flank|CPNE6_uc001wll.2_5'Flank	NM_138360	NP_612369	Q8ND23	LR16B_HUMAN	leucine rich repeat containing 16B	1278										ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(265;0.019)		CATGGCCTCCCAAGCCAGTGG	0.637000													9	32	---	---	---	---	0	0	0.069234	0	0
Unknown	0	broad.mit.edu	37	14	28733965	28733965	+	Missense_Mutation	SNP	G	A	A			TCGA-EL-A3D0-01A-12D-A202-08	TCGA-EL-A3D0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	4830f1eb-187d-428d-9652-492ef217f80d	d52a3420-e2c5-4188-bd7e-6f11cda56e45	g.chr14:28733965G>A	uc001wqd.2	+	1	346	c.206G>A	c.(205-207)CGC>CAC	p.R69H						SubName: Full=cDNA FLJ60537, highly similar to BCL2/adenovirus E1B 19 kDa protein-interacting protein 3;																		AGCCCACCTCGCTCACAGACA	0.453000													28	89	---	---	---	---	0	0	0.099896	0	0
SNX22	79856	broad.mit.edu	37	15	64446698	64446698	+	Silent	SNP	G	A	A	rs143435068	by1000genomes	TCGA-EL-A3D0-01A-12D-A202-08	TCGA-EL-A3D0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	4830f1eb-187d-428d-9652-492ef217f80d	d52a3420-e2c5-4188-bd7e-6f11cda56e45	g.chr15:64446698G>A	uc002anc.1	+	7	632	c.573G>A	c.(571-573)CCG>CCA	p.P191P	SNX22_uc002amz.1_3'UTR|SNX22_uc002ana.1_3'UTR|SNX22_uc002anb.1_RNA	NM_024798	NP_079074	Q96L94	SNX22_HUMAN	sorting nexin 22	191				P -> L (in Ref. 2; BAB14776).	cell communication|protein transport	cytoplasmic vesicle membrane	phosphatidylinositol binding				0						CTCTGCCACCGATGCCCTGAT	0.572000													129	134	---	---	---	---	0	0	0.048971	0	0
KRTAP4-12	83755	broad.mit.edu	37	17	39279994	39279994	+	Silent	SNP	T	C	C			TCGA-EL-A3D0-01A-12D-A202-08	TCGA-EL-A3D0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	4830f1eb-187d-428d-9652-492ef217f80d	d52a3420-e2c5-4188-bd7e-6f11cda56e45	g.chr17:39279994T>C	uc002hwa.2	-	1	426	c.381A>G	c.(379-381)AGA>AGG	p.R127R		NM_031854	NP_114060	Q9BQ66	KR412_HUMAN	keratin associated protein 4-12	127	23.|31 X 5 AA repeats of C-C-[GRQVIL]-[SPTR]- [VSTQPC].		Missing (in allele KAP4.12-v1).			keratin filament					0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000371)			agcactggggtctgcagcagc	0.209000													4	81	---	---	---	---	0	0	0.009096	0	0
MED13	9969	broad.mit.edu	37	17	60140521	60140521	+	Missense_Mutation	SNP	G	A	A			TCGA-EL-A3D0-01A-12D-A202-08	TCGA-EL-A3D0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	4830f1eb-187d-428d-9652-492ef217f80d	d52a3420-e2c5-4188-bd7e-6f11cda56e45	g.chr17:60140521G>A	uc002izo.2	-	2	285	c.208C>T	c.(208-210)CGG>TGG	p.R70W		NM_005121	NP_005112	Q9UHV7	MED13_HUMAN	mediator complex subunit 13	70					androgen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ligand-dependent nuclear receptor transcription coactivator activity|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			large_intestine(1)|ovary(1)	2						TGATCTCGCCGCCAAACACCA	0.468000													4	166	---	---	---	---	0	0	0.009096	0	0
ABCA5	23461	broad.mit.edu	37	17	67287453	67287453	+	Missense_Mutation	SNP	T	C	C			TCGA-EL-A3D0-01A-12D-A202-08	TCGA-EL-A3D0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	4830f1eb-187d-428d-9652-492ef217f80d	d52a3420-e2c5-4188-bd7e-6f11cda56e45	g.chr17:67287453T>C	uc002jif.2	-	11	2728	c.1510A>G	c.(1510-1512)ATA>GTA	p.I504V	ABCA5_uc002jie.2_RNA|ABCA5_uc002jig.2_Missense_Mutation_p.I504V|ABCA5_uc002jih.2_Missense_Mutation_p.I504V|ABCA5_uc010dfe.2_Missense_Mutation_p.I504V	NM_018672	NP_061142	Q8WWZ7	ABCA5_HUMAN	ATP-binding cassette, sub-family A , member 5	504	ABC transporter 1.				cholesterol efflux|high-density lipoprotein particle remodeling|negative regulation of macrophage derived foam cell differentiation	Golgi membrane|integral to membrane|late endosome membrane|lysosomal membrane	ATP binding|ATPase activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Breast(10;3.72e-11)					CCCTCATATATGTCAAATGAC	0.363000													9	38	---	---	---	---	0	0	0.069234	0	0
C19orf29	58509	broad.mit.edu	37	19	3612148	3612148	+	Missense_Mutation	SNP	C	A	A			TCGA-EL-A3D0-01A-12D-A202-08	TCGA-EL-A3D0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	4830f1eb-187d-428d-9652-492ef217f80d	d52a3420-e2c5-4188-bd7e-6f11cda56e45	g.chr19:3612148C>A	uc002lyh.2	-	10	2103	c.2050G>T	c.(2050-2052)GAC>TAC	p.D684Y	C19orf29_uc010xho.1_Missense_Mutation_p.D143Y|C19orf29_uc010dtn.2_Missense_Mutation_p.D532Y|C19orf29_uc002lyi.3_Missense_Mutation_p.D684Y|C19orf29_uc010dto.2_RNA	NM_001080543	NP_001074012	Q8WUQ7	CS029_HUMAN	chromosome 19 open reading frame 29	684						catalytic step 2 spliceosome	protein binding				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00253)|STAD - Stomach adenocarcinoma(1328;0.18)		TCGATGAGGTCGGGGTAGAAG	0.592000													47	190	---	---	---	---	9.58827e-17	1.20995e-16	0.048971	1	0
FBN3	84467	broad.mit.edu	37	19	8196578	8196578	+	Missense_Mutation	SNP	C	T	T			TCGA-EL-A3D0-01A-12D-A202-08	TCGA-EL-A3D0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	4830f1eb-187d-428d-9652-492ef217f80d	d52a3420-e2c5-4188-bd7e-6f11cda56e45	g.chr19:8196578C>T	uc002mjf.2	-	14	1871	c.1850G>A	c.(1849-1851)CGC>CAC	p.R617H		NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	617						proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						GCAGGTGCTGCGCACGTGGGT	0.677000													14	62	---	---	---	---	0	0	0.105934	0	0
EHD2	30846	broad.mit.edu	37	19	48244668	48244668	+	Silent	SNP	C	A	A			TCGA-EL-A3D0-01A-12D-A202-08	TCGA-EL-A3D0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	4830f1eb-187d-428d-9652-492ef217f80d	d52a3420-e2c5-4188-bd7e-6f11cda56e45	g.chr19:48244668C>A	uc002phj.3	+	6	1861	c.1611C>A	c.(1609-1611)CGC>CGA	p.R537R	EHD2_uc010xyu.1_Silent_p.R401R|EHD2_uc010xyv.1_Silent_p.R220R	NM_014601	NP_055416	Q9NZN4	EHD2_HUMAN	EH-domain containing 2	537	EH.				blood coagulation|endocytic recycling	nucleus|plasma membrane|recycling endosome membrane	ATP binding|calcium ion binding|GTP binding|GTPase activity|nucleic acid binding			ovary(1)|skin(1)	2		all_cancers(25;6.74e-07)|all_lung(116;2.02e-05)|Lung NSC(112;3.77e-05)|all_epithelial(76;4.89e-05)|all_neural(266;0.0332)|Ovarian(192;0.086)		OV - Ovarian serous cystadenocarcinoma(262;0.000336)|all cancers(93;0.000415)|Epithelial(262;0.0132)|GBM - Glioblastoma multiforme(486;0.0537)		CCAAGCGACGCCACAAGGGCT	0.716000													9	9	---	---	---	---	3.09899e-07	3.73287e-07	0.047766	1	0
MYBPC2	4606	broad.mit.edu	37	19	50957538	50957538	+	Silent	SNP	G	A	A			TCGA-EL-A3D0-01A-12D-A202-08	TCGA-EL-A3D0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	4830f1eb-187d-428d-9652-492ef217f80d	d52a3420-e2c5-4188-bd7e-6f11cda56e45	g.chr19:50957538G>A	uc002psf.2	+	18	1977	c.1926G>A	c.(1924-1926)CCG>CCA	p.P642P		NM_004533	NP_004524	Q14324	MYPC2_HUMAN	myosin binding protein C, fast type	642	Fibronectin type-III 1.				cell adhesion|muscle filament sliding	cytosol|myosin filament	actin binding|structural constituent of muscle			breast(1)	1		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.0079)|GBM - Glioblastoma multiforme(134;0.0144)		CAGACCCCCCGGAGGCTGTGC	0.647000													6	65	---	---	---	---	0	0	0.021553	0	0
PLB1	151056	broad.mit.edu	37	2	28808648	28808648	+	Missense_Mutation	SNP	T	C	C			TCGA-EL-A3D0-01A-12D-A202-08	TCGA-EL-A3D0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	4830f1eb-187d-428d-9652-492ef217f80d	d52a3420-e2c5-4188-bd7e-6f11cda56e45	g.chr2:28808648T>C	uc002rmb.1	+	26	1754	c.1754T>C	c.(1753-1755)CTG>CCG	p.L585P	PLB1_uc010ezj.1_Missense_Mutation_p.L574P|PLB1_uc002rmc.2_Missense_Mutation_p.L273P|PLB1_uc002rmd.1_Missense_Mutation_p.L95P	NM_153021	NP_694566	Q6P1J6	PLB1_HUMAN	phospholipase B1 precursor	585	4 X 308-326 AA approximate repeats.|2.|Extracellular (Potential).				lipid catabolic process|retinoid metabolic process|steroid metabolic process	apical plasma membrane|integral to membrane	lysophospholipase activity|phospholipase A2 activity|retinyl-palmitate esterase activity			ovary(4)|large_intestine(2)|skin(2)|breast(1)	9	Acute lymphoblastic leukemia(172;0.155)					CCCTGTGTCCTGAAGTTTGAT	0.468000													3	99	---	---	---	---	0	0	0.009096	0	0
LOC728819	728819	broad.mit.edu	37	2	43902586	43902586	+	Silent	SNP	C	T	T			TCGA-EL-A3D0-01A-12D-A202-08	TCGA-EL-A3D0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	4830f1eb-187d-428d-9652-492ef217f80d	d52a3420-e2c5-4188-bd7e-6f11cda56e45	g.chr2:43902586C>T	uc010fav.1	-	1	876	c.876G>A	c.(874-876)CGG>CGA	p.R292R	PLEKHH2_uc002rte.3_Intron|PLEKHH2_uc002rtf.3_Intron|PLEKHH2_uc010yny.1_Intron	NM_001101330	NP_001094800			C1GALT1-specific chaperone 1-like												0		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)				ATGCCCTGAGCCGGTACAGGC	0.458000													3	38	---	---	---	---	0	0	0.004672	0	0
GPR155	151556	broad.mit.edu	37	2	175335223	175335223	+	Silent	SNP	C	T	T			TCGA-EL-A3D0-01A-12D-A202-08	TCGA-EL-A3D0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	4830f1eb-187d-428d-9652-492ef217f80d	d52a3420-e2c5-4188-bd7e-6f11cda56e45	g.chr2:175335223C>T	uc002uit.2	-	5	1312	c.921G>A	c.(919-921)GTG>GTA	p.V307V	GPR155_uc002uiu.2_Silent_p.V307V|GPR155_uc002uiv.2_Silent_p.V307V|GPR155_uc010fqs.2_Silent_p.V307V	NM_001033045	NP_001028217	Q7Z3F1	GP155_HUMAN	G protein-coupled receptor 155 isoform 9	307					intracellular signal transduction|transmembrane transport	integral to membrane				ovary(1)	1						TATGGTTCACCACACTGTCGC	0.408000													5	54	---	---	---	---	0	0	0.029380	0	0
SLC12A5	57468	broad.mit.edu	37	20	44666024	44666024	+	Silent	SNP	G	A	A			TCGA-EL-A3D0-01A-12D-A202-08	TCGA-EL-A3D0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	4830f1eb-187d-428d-9652-492ef217f80d	d52a3420-e2c5-4188-bd7e-6f11cda56e45	g.chr20:44666024G>A	uc010zxl.1	+	6	757	c.681G>A	c.(679-681)CTG>CTA	p.L227L	SLC12A5_uc002xra.2_Silent_p.L204L|SLC12A5_uc010zxm.1_Intron|SLC12A5_uc002xrb.2_Silent_p.L204L	NM_001134771	NP_001128243	Q9H2X9	S12A5_HUMAN	solute carrier family 12 (potassium-chloride	227	Helical; (Potential).				potassium ion transport|sodium ion transport	integral to membrane	potassium:chloride symporter activity			ovary(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5		Myeloproliferative disorder(115;0.0122)			Bumetanide(DB00887)|Potassium Chloride(DB00761)	AAATCCTGCTGGTAAGAGAGG	0.418000													3	37	---	---	---	---	0	0	0.004672	0	0
KRTAP10-5	386680	broad.mit.edu	37	21	45999781	45999781	+	Silent	SNP	G	A	A			TCGA-EL-A3D0-01A-12D-A202-08	TCGA-EL-A3D0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	4830f1eb-187d-428d-9652-492ef217f80d	d52a3420-e2c5-4188-bd7e-6f11cda56e45	g.chr21:45999781G>A	uc002zfl.1	-	1	701	c.675C>T	c.(673-675)TGC>TGT	p.C225C	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198694	NP_941967	P60370	KR105_HUMAN	keratin associated protein 10-5	225	22 X 5 AA repeats of C-C-X(3).					keratin filament					0						ATATGGGGCGGCAGAGGAGGG	0.682000													4	165	---	---	---	---	0	0	0.014758	0	0
LOC96610	96610	broad.mit.edu	37	22	22664141	22664141	+	RNA	SNP	G	A	A			TCGA-EL-A3D0-01A-12D-A202-08	TCGA-EL-A3D0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	4830f1eb-187d-428d-9652-492ef217f80d	d52a3420-e2c5-4188-bd7e-6f11cda56e45	g.chr22:22664141G>A	uc011aim.1	+	30		c.1998G>A			LOC96610_uc011aiq.1_RNA					Parts of antibodies, mostly variable regions.												0						AAATTTGAAGGTGCTGTGATT	0.448000													4	68	---	---	---	---	0	0	0.009096	0	0
LOC96610	96610	broad.mit.edu	37	22	22664606	22664606	+	RNA	SNP	A	G	G			TCGA-EL-A3D0-01A-12D-A202-08	TCGA-EL-A3D0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	4830f1eb-187d-428d-9652-492ef217f80d	d52a3420-e2c5-4188-bd7e-6f11cda56e45	g.chr22:22664606A>G	uc011aim.1	+	31		c.2121A>G			LOC96610_uc011aiq.1_RNA					Parts of antibodies, mostly variable regions.												0						GTCTTCATGCAAACTTGGTAT	0.398000													3	16	---	---	---	---	0	0	0.004672	0	0
WDR5B	54554	broad.mit.edu	37	3	122134317	122134317	+	Missense_Mutation	SNP	T	G	G	rs144433176	byFrequency	TCGA-EL-A3D0-01A-12D-A202-08	TCGA-EL-A3D0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	4830f1eb-187d-428d-9652-492ef217f80d	d52a3420-e2c5-4188-bd7e-6f11cda56e45	g.chr3:122134317T>G	uc003efa.1	-	1	566	c.59A>C	c.(58-60)AAT>ACT	p.N20T		NM_019069	NP_061942	Q86VZ2	WDR5B_HUMAN	WD repeat domain 5B	20										ovary(3)	3				GBM - Glioblastoma multiforme(114;0.0704)		CTTGCTCTGATTGGCCGATGA	0.498000													76	103	---	---	---	---	0	0	0.048971	0	0
MYO10	4651	broad.mit.edu	37	5	16769308	16769308	+	Missense_Mutation	SNP	G	A	A			TCGA-EL-A3D0-01A-12D-A202-08	TCGA-EL-A3D0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	4830f1eb-187d-428d-9652-492ef217f80d	d52a3420-e2c5-4188-bd7e-6f11cda56e45	g.chr5:16769308G>A	uc003jft.3	-	10	1403	c.935C>T	c.(934-936)GCA>GTA	p.A312V		NM_012334	NP_036466	Q9HD67	MYO10_HUMAN	myosin X	312	Myosin head-like.				axon guidance|signal transduction	myosin complex	actin binding|ATP binding|motor activity			ovary(2)|pancreas(1)	3						CACGTCCATTGCCGTCTAGAA	0.373000													14	8	---	---	---	---	0	0	0.105934	0	0
DIAPH1	1729	broad.mit.edu	37	5	140908072	140908072	+	Silent	SNP	G	C	C			TCGA-EL-A3D0-01A-12D-A202-08	TCGA-EL-A3D0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	4830f1eb-187d-428d-9652-492ef217f80d	d52a3420-e2c5-4188-bd7e-6f11cda56e45	g.chr5:140908072G>C	uc003llb.3	-	24	3237	c.3096C>G	c.(3094-3096)CCC>CCG	p.P1032P	DIAPH1_uc011dbd.1_5'Flank|DIAPH1_uc003llc.3_Silent_p.P1023P|DIAPH1_uc010jgc.1_Silent_p.P468P	NM_005219	NP_005210	O60610	DIAP1_HUMAN	diaphanous 1 isoform 1	1032	FH2.				regulation of microtubule-based process|sensory perception of sound	cytoplasm|cytoskeleton|ruffle membrane	actin binding|receptor binding|Rho GTPase binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGAGGACATCGGGATAGTCAT	0.498000													30	41	---	---	---	---	0	0	0.030593	0	0
ZNF318	24149	broad.mit.edu	37	6	43325106	43325106	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EL-A3D0-01A-12D-A202-08	TCGA-EL-A3D0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	4830f1eb-187d-428d-9652-492ef217f80d	d52a3420-e2c5-4188-bd7e-6f11cda56e45	g.chr6:43325106G>A	uc003oux.2	-	3	1024	c.946C>T	c.(946-948)CGA>TGA	p.R316*	ZNF318_uc003ouw.2_RNA	NM_014345	NP_055160	Q5VUA4	ZN318_HUMAN	zinc finger protein 318	316	Potential.				meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	nucleic acid binding|zinc ion binding			ovary(3)|breast(2)|central_nervous_system(1)|skin(1)	7			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0171)|OV - Ovarian serous cystadenocarcinoma(102;0.0579)			TCCAGTTCTCGAAACTCAGGG	0.522000													16	55	---	---	---	---	0	0	0.028581	0	0
BEND6	221336	broad.mit.edu	37	6	56883337	56883337	+	Missense_Mutation	SNP	T	A	A			TCGA-EL-A3D0-01A-12D-A202-08	TCGA-EL-A3D0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	4830f1eb-187d-428d-9652-492ef217f80d	d52a3420-e2c5-4188-bd7e-6f11cda56e45	g.chr6:56883337T>A	uc010kab.2	+	6	1417	c.831T>A	c.(829-831)GAT>GAA	p.D277E	BEND6_uc003pdi.3_Missense_Mutation_p.D179E	NM_152731	NP_689944	Q5SZJ8	BEND6_HUMAN	BEN domain containing 6	277											0						ACTCTCAGGATATTAAATAGA	0.313000													18	32	---	---	---	---	0	0	0.033300	0	0
MED23	9439	broad.mit.edu	37	6	131926420	131926420	+	Missense_Mutation	SNP	T	C	C			TCGA-EL-A3D0-01A-12D-A202-08	TCGA-EL-A3D0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	4830f1eb-187d-428d-9652-492ef217f80d	d52a3420-e2c5-4188-bd7e-6f11cda56e45	g.chr6:131926420T>C	uc003qcs.1	-	14	1747	c.1573A>G	c.(1573-1575)ATG>GTG	p.M525V	MED23_uc003qcq.2_Missense_Mutation_p.M531V|MED23_uc011eca.1_Missense_Mutation_p.M166V|MED23_uc003qct.1_Missense_Mutation_p.M531V|MED23_uc011ecb.1_Intron	NM_004830	NP_004821	Q9ULK4	MED23_HUMAN	mediator complex subunit 23 isoform a	525					regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	transcription factor complex	protein binding|transcription coactivator activity			ovary(1)|kidney(1)|central_nervous_system(1)	3	Breast(56;0.0753)			GBM - Glioblastoma multiforme(226;0.0115)|OV - Ovarian serous cystadenocarcinoma(155;0.0608)		AGGAGGTTCATAGGTAAGGGG	0.393000													3	85	---	---	---	---	0	0	0.009096	0	0
SEPT7	989	broad.mit.edu	37	7	35930362	35930362	+	Silent	SNP	T	C	C			TCGA-EL-A3D0-01A-12D-A202-08	TCGA-EL-A3D0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	4830f1eb-187d-428d-9652-492ef217f80d	d52a3420-e2c5-4188-bd7e-6f11cda56e45	g.chr7:35930362T>C	uc010kxc.2	+	10	1150	c.957T>C	c.(955-957)TAT>TAC	p.Y319Y	SEPT7_uc011kat.1_Silent_p.Y318Y|SEPT7_uc011kau.1_Silent_p.Y283Y|SEPT7_uc011kav.1_Silent_p.Y266Y|SEPT7_uc003tey.2_Silent_p.Y167Y	NM_001788	NP_001779	Q16181	SEPT7_HUMAN	cell division cycle 10 isoform 1	319					cilium morphogenesis|cytokinesis|mitosis|protein heterooligomerization|regulation of embryonic cell shape	cilium axoneme|cleavage furrow|condensed chromosome kinetochore|midbody|nucleus|septin complex|spindle|stress fiber	GTP binding|protein binding|structural molecule activity				0						CTGTGACTTATAATGGAGTTG	0.323000													3	24	---	---	---	---	0	0	0.004672	0	0
CCL24	6369	broad.mit.edu	37	7	75441263	75441263	+	Missense_Mutation	SNP	G	C	C			TCGA-EL-A3D0-01A-12D-A202-08	TCGA-EL-A3D0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	4830f1eb-187d-428d-9652-492ef217f80d	d52a3420-e2c5-4188-bd7e-6f11cda56e45	g.chr7:75441263G>C	uc011kga.1	-	3	211	c.211C>G	c.(211-213)CAG>GAG	p.Q71E		NM_002991	NP_002982	O00175	CCL24_HUMAN	small inducible cytokine A24 precursor	71					cell-cell signaling|chemotaxis|immune response|inflammatory response|positive regulation of actin filament polymerization|positive regulation of cell migration|positive regulation of endothelial cell proliferation|positive regulation of Rac GTPase activity|signal transduction	extracellular space	chemokine activity				0						CAGAACTGCTGGCCCTTCTTG	0.612000													3	97	---	---	---	---	0	0	0.004672	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-EL-A3D0-01A-12D-A202-08	TCGA-EL-A3D0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	4830f1eb-187d-428d-9652-492ef217f80d	d52a3420-e2c5-4188-bd7e-6f11cda56e45	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				65	50	---	---	---	---	0	0	0.048971	0	0
UBXN2B	137886	broad.mit.edu	37	8	59352245	59352245	+	Missense_Mutation	SNP	A	G	G			TCGA-EL-A3D0-01A-12D-A202-08	TCGA-EL-A3D0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	4830f1eb-187d-428d-9652-492ef217f80d	d52a3420-e2c5-4188-bd7e-6f11cda56e45	g.chr8:59352245A>G	uc003xtl.2	+	6	709	c.587A>G	c.(586-588)GAT>GGT	p.D196G		NM_001077619	NP_001071087	Q14CS0	UBX2B_HUMAN	UBX domain protein 2B	196	SEP.					cytosol|endoplasmic reticulum|Golgi apparatus|nucleus				ovary(2)	2						GTGAATTTGGATATGGAGGAT	0.383000													20	119	---	---	---	---	0	0	0.055883	0	0
ENPP2	5168	broad.mit.edu	37	8	120650732	120650732	+	Silent	SNP	A	G	G			TCGA-EL-A3D0-01A-12D-A202-08	TCGA-EL-A3D0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	4830f1eb-187d-428d-9652-492ef217f80d	d52a3420-e2c5-4188-bd7e-6f11cda56e45	g.chr8:120650732A>G	uc003yot.1	-	2	155	c.69T>C	c.(67-69)AAT>AAC	p.N23N	ENPP2_uc003yos.1_Silent_p.N23N|ENPP2_uc010mdd.1_Silent_p.N23N	NM_001040092	NP_001035181	Q13822	ENPP2_HUMAN	autotaxin isoform 2 preproprotein	23				N -> S (in Ref. 1; AAA64785 and 5; ABW38316).	cellular component movement|chemotaxis|G-protein coupled receptor protein signaling pathway|immune response|phosphate metabolic process|phosphatidylcholine catabolic process|regulation of cell migration	extracellular space|integral to plasma membrane	alkylglycerophosphoethanolamine phosphodiesterase activity|calcium ion binding|lysophospholipase activity|nucleic acid binding|nucleotide diphosphatase activity|phosphodiesterase I activity|polysaccharide binding|scavenger receptor activity|transcription factor binding|zinc ion binding			ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)|large_intestine(1)|kidney(1)	7	Lung NSC(37;5.03e-06)|Ovarian(258;0.0249)|Hepatocellular(40;0.161)		STAD - Stomach adenocarcinoma(47;0.00185)			CTAAGCAGATATTGACTCCAA	0.378000													38	128	---	---	---	---	0	0	0.045515	0	0
OR1J2	26740	broad.mit.edu	37	9	125273586	125273586	+	Missense_Mutation	SNP	G	T	T			TCGA-EL-A3D0-01A-12D-A202-08	TCGA-EL-A3D0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	4830f1eb-187d-428d-9652-492ef217f80d	d52a3420-e2c5-4188-bd7e-6f11cda56e45	g.chr9:125273586G>T	uc004bmj.1	+	4	1361	c.506G>T	c.(505-507)TGT>TTT	p.C169F	OR1J2_uc011lyv.1_Missense_Mutation_p.C169F	NM_054107	NP_473448	Q8NGS2	OR1J2_HUMAN	olfactory receptor, family 1, subfamily J,	169	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|pancreas(1)|breast(1)	5						CTGTCTTTCTGTGCTGCGAAC	0.522000													23	148	---	---	---	---	2.44723e-14	3.01635e-14	0.099896	1	0
Unknown	0	broad.mit.edu	37	1	40598462	40598462	+	IGR	DEL	T	-	-			TCGA-EL-A3D0-01A-12D-A202-08	TCGA-EL-A3D0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	4830f1eb-187d-428d-9652-492ef217f80d	d52a3420-e2c5-4188-bd7e-6f11cda56e45	g.chr1:40598462delT								PPT1 (35320 upstream) : RLF (28579 downstream)																							CAGCGAATCCTCAAAAGCCAC	0.627													2	4	---	---	---	---					
GPR44	11251	broad.mit.edu	37	11	60620166	60620167	+	In_Frame_Ins	INS	-	GCG	GCG	rs55642873		TCGA-EL-A3D0-01A-12D-A202-08	TCGA-EL-A3D0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	4830f1eb-187d-428d-9652-492ef217f80d	d52a3420-e2c5-4188-bd7e-6f11cda56e45	g.chr11:60620166_60620167insGCG	uc001nqc.2	-	2	1141_1142	c.1029_1030insCGC	c.(1027-1032)insCGC	p.343_344insR		NM_004778	NP_004769	Q9Y5Y4	GPR44_HUMAN	G protein-coupled receptor 44	343_344	Cytoplasmic (Potential).				immune response	integral to plasma membrane	N-formyl peptide receptor activity			ovary(1)	1						GTGGAGGAGGTGCGGCGGCGGC	0.748													4	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	12	77054675	77054676	+	IGR	INS	-	A	A	rs34680604		TCGA-EL-A3D0-01A-12D-A202-08	TCGA-EL-A3D0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	4830f1eb-187d-428d-9652-492ef217f80d	d52a3420-e2c5-4188-bd7e-6f11cda56e45	g.chr12:77054675_77054676insA								OSBPL8 (101086 upstream) : ZDHHC17 (103178 downstream)																							TAATAGGTGttaaaaaaaaaaa	0.386													3	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	22253184	22253185	+	IGR	INS	-	A	A	rs2202992		TCGA-EL-A3D0-01A-12D-A202-08	TCGA-EL-A3D0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	4830f1eb-187d-428d-9652-492ef217f80d	d52a3420-e2c5-4188-bd7e-6f11cda56e45	g.chr17:22253184_22253185insA								FLJ36000 (340114 upstream) : None (None downstream)																							cgcacagaactaaacagaagca	0.000													8	12	---	---	---	---					
Unknown	0	broad.mit.edu	37	18	75577697	75577697	+	IGR	DEL	C	-	-			TCGA-EL-A3D0-01A-12D-A202-08	TCGA-EL-A3D0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	4830f1eb-187d-428d-9652-492ef217f80d	d52a3420-e2c5-4188-bd7e-6f11cda56e45	g.chr18:75577697delC								GALR1 (595603 upstream) : None (None downstream)																							agaggagcttccccgggctgg	0.045													2	4	---	---	---	---					
GRIN3B	116444	broad.mit.edu	37	19	1009186	1009188	+	In_Frame_Del	DEL	AGC	-	-			TCGA-EL-A3D0-01A-12D-A202-08	TCGA-EL-A3D0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	4830f1eb-187d-428d-9652-492ef217f80d	d52a3420-e2c5-4188-bd7e-6f11cda56e45	g.chr19:1009186_1009188delAGC	uc002lqo.1	+	9	2717_2719	c.2717_2719delAGC	c.(2716-2721)GAGCAG>GAG	p.Q912del	uc002lqp.1_RNA	NM_138690	NP_619635	O60391	NMD3B_HUMAN	glutamate receptor, ionotropic,	912	Cytoplasmic (Potential).				ionotropic glutamate receptor signaling pathway|protein insertion into membrane|regulation of calcium ion transport	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|neuronal cell body|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|glycine binding|ionotropic glutamate receptor activity|neurotransmitter receptor activity				0		Acute lymphoblastic leukemia(61;4.36e-14)|all_hematologic(61;4.84e-09)|Lung NSC(49;0.000226)|all_lung(49;0.000353)|Breast(49;0.00066)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)	Glycine(DB00145)|L-Glutamic Acid(DB00142)|Orphenadrine(DB01173)	CCCGAGGTGGagcagcagcagca	0.680													4	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	42107414	42107415	+	IGR	DEL	CA	-	-	rs72172011		TCGA-EL-A3D0-01A-12D-A202-08	TCGA-EL-A3D0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	4830f1eb-187d-428d-9652-492ef217f80d	d52a3420-e2c5-4188-bd7e-6f11cda56e45	g.chr19:42107414_42107415delCA								CEACAM21 (14218 upstream) : CEACAM4 (17929 downstream)																							Gacacgcacgcacgcgcgcgcg	0.183													4	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	113866957	113866957	+	IGR	DEL	T	-	-			TCGA-EL-A3D0-01A-12D-A202-08	TCGA-EL-A3D0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	4830f1eb-187d-428d-9652-492ef217f80d	d52a3420-e2c5-4188-bd7e-6f11cda56e45	g.chr9:113866957delT								LPAR1 (65431 upstream) : OR2K2 (222807 downstream)																							TAGGTAATTCTTAAAGTGGTA	0.134													2	4	---	---	---	---					
BCOR	54880	broad.mit.edu	37	X	39923030	39923031	+	Frame_Shift_Ins	INS	-	T	T			TCGA-EL-A3D0-01A-12D-A202-08	TCGA-EL-A3D0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	4830f1eb-187d-428d-9652-492ef217f80d	d52a3420-e2c5-4188-bd7e-6f11cda56e45	g.chrX:39923030_39923031insT	uc004den.3	-	8	3969_3970	c.3677_3678insA	c.(3676-3678)GATfs	p.D1226fs	BCOR_uc004dep.3_Frame_Shift_Ins_p.D1192fs|BCOR_uc004deo.3_Frame_Shift_Ins_p.D1174fs|BCOR_uc010nhb.2_5'Flank|BCOR_uc004dem.3_Frame_Shift_Ins_p.D1192fs	NM_001123385	NP_001116857	Q6W2J9	BCOR_HUMAN	BCL-6 interacting corepressor isoform c	1226					heart development|histone H2A monoubiquitination|negative regulation of bone mineralization|negative regulation of histone H3-K36 methylation|negative regulation of histone H3-K4 methylation|negative regulation of tooth mineralization|negative regulation of transcription from RNA polymerase II promoter|odontogenesis|palate development|specification of axis polarity|transcription, DNA-dependent	nucleus	heat shock protein binding|histone deacetylase binding|transcription corepressor activity|transcription factor binding|transcription regulatory region DNA binding			ovary(2)|kidney(1)|central_nervous_system(1)	4						CAGGTTTGCCATCTGCTGCCGA	0.540													59	42	---	---	---	---					
