Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
CACNA1E	777	broad.mit.edu	37	1	181735734	181735734	+	Missense_Mutation	SNP	T	C	C			TCGA-EL-A3H8-01A-11D-A20C-08	TCGA-EL-A3H8-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	05186c15-d6e9-4087-9b9e-0b109b8a9826	f57de21a-8553-47a8-9783-ca735dec455a	g.chr1:181735734T>C	uc001gow.2	+	35	5033	c.4868T>C	c.(4867-4869)ATC>ACC	p.I1623T	CACNA1E_uc009wxs.2_Missense_Mutation_p.I1511T|CACNA1E_uc001gox.1_Missense_Mutation_p.I849T|CACNA1E_uc009wxt.2_Missense_Mutation_p.I849T	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	1623	IV.|Helical; Name=S5 of repeat IV.				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						ATTTATGCCATCATTGGGATG	0.478000													10	9	---	---	---	---	0	0	0.093190	0	0
SNAP47	116841	broad.mit.edu	37	1	227935556	227935556	+	Missense_Mutation	SNP	G	A	A			TCGA-EL-A3H8-01A-11D-A20C-08	TCGA-EL-A3H8-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	05186c15-d6e9-4087-9b9e-0b109b8a9826	f57de21a-8553-47a8-9783-ca735dec455a	g.chr1:227935556G>A	uc001hrf.2	+	2	668	c.254G>A	c.(253-255)AGC>AAC	p.S85N	SNAP47_uc001hqz.2_Missense_Mutation_p.S40N|SNAP47_uc001hra.2_Intron|SNAP47_uc001hrd.2_Missense_Mutation_p.S85N|SNAP47_uc001hre.2_Intron|SNAP47_uc001hrg.1_Missense_Mutation_p.S40N	NM_053052	NP_444280	Q5SQN1	SNP47_HUMAN	synaptosomal-associated protein, 47kDa	85				DST -> TRP (in Ref. 5; AAH01332).		endomembrane system|membrane|perinuclear region of cytoplasm				ovary(1)	1						ATGACTGACAGCACTGGAGAG	0.527000													3	37	---	---	---	---	0	0	0.115264	0	0
ANKRD42	338699	broad.mit.edu	37	11	82935987	82935987	+	Missense_Mutation	SNP	A	G	G			TCGA-EL-A3H8-01A-11D-A20C-08	TCGA-EL-A3H8-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	05186c15-d6e9-4087-9b9e-0b109b8a9826	f57de21a-8553-47a8-9783-ca735dec455a	g.chr11:82935987A>G	uc001ozz.1	+	6	1015	c.593A>G	c.(592-594)AAT>AGT	p.N198S	ANKRD42_uc010rsv.1_Missense_Mutation_p.N226S|ANKRD42_uc001paa.2_Missense_Mutation_p.N226S|ANKRD42_uc001pab.1_Missense_Mutation_p.N225S	NM_182603	NP_872409	Q8N9B4	ANR42_HUMAN	ankyrin repeat domain 42	198										skin(1)	1						AAAGCTTTCAATGATAATGGA	0.423000													48	74	---	---	---	---	0	0	0.139131	0	0
LOC100288778	100288778	broad.mit.edu	37	12	88936	88936	+	Silent	SNP	A	C	C			TCGA-EL-A3H8-01A-11D-A20C-08	TCGA-EL-A3H8-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	05186c15-d6e9-4087-9b9e-0b109b8a9826	f57de21a-8553-47a8-9783-ca735dec455a	g.chr12:88936A>C	uc010scy.1	+	7	912	c.357A>C	c.(355-357)GCA>GCC	p.A119A	LOC100288778_uc010scz.1_RNA|LOC100288778_uc010sdc.1_RNA|LOC100288778_uc010sdd.1_Silent_p.A119A|LOC100288778_uc010sde.1_Silent_p.A119A|LOC100288778_uc010sdf.1_Silent_p.A119A|LOC100288778_uc010sdg.1_Silent_p.A119A|LOC100288778_uc010sdh.1_RNA					SubName: Full=Actin nucleation promoting factor; Flags: Fragment;												0						TGGCCAGTGCACCCCCACTCC	0.512000													2	4	---	---	---	---	0	0	0.115264	0	0
TOX4	9878	broad.mit.edu	37	14	21961062	21961062	+	Silent	SNP	T	A	A			TCGA-EL-A3H8-01A-11D-A20C-08	TCGA-EL-A3H8-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	05186c15-d6e9-4087-9b9e-0b109b8a9826	f57de21a-8553-47a8-9783-ca735dec455a	g.chr14:21961062T>A	uc001waz.2	+	7	1390	c.1287T>A	c.(1285-1287)GCT>GCA	p.A429A	TOX4_uc001way.2_Silent_p.A299A|TOX4_uc001wba.2_RNA|TOX4_uc010tlu.1_Silent_p.A406A|TOX4_uc010tlv.1_Silent_p.A299A	NM_014828	NP_055643	O94842	TOX4_HUMAN	epidermal Langerhans cell protein LCP1	429	Gln/Pro-rich.|Poly-Ala.					chromatin|nucleus|PTW/PP1 phosphatase complex	DNA binding|protein binding			ovary(1)	1	all_cancers(95;0.000465)		Epithelial(56;6.61e-06)|all cancers(55;5.15e-05)	GBM - Glioblastoma multiforme(265;0.0149)		CAGCAGCAGCTGCTGCTGCTG	0.582000													4	143	---	---	---	---	0	0	0.014758	0	0
Unknown	0	broad.mit.edu	37	15	102294715	102294715	+	Silent	SNP	C	T	T			TCGA-EL-A3H8-01A-11D-A20C-08	TCGA-EL-A3H8-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	05186c15-d6e9-4087-9b9e-0b109b8a9826	f57de21a-8553-47a8-9783-ca735dec455a	g.chr15:102294715C>T	uc010usj.1	+	5	602	c.543C>T	c.(541-543)GAC>GAT	p.D181D	uc002bxo.2_5'Flank|uc002bxq.2_5'Flank|uc002bxr.2_5'Flank|uc010usk.1_5'Flank|uc002bxs.2_5'Flank|uc002bxu.1_5'Flank|uc002bxv.1_5'Flank|uc002bxw.1_5'Flank|uc002bxy.1_5'Flank|uc002byb.1_5'Flank|uc002byd.2_5'Flank|uc002bye.2_5'Flank|uc002byf.1_5'Flank|uc002byg.2_5'Flank|uc002byi.2_5'Flank|uc002byk.2_5'Flank|uc002bym.2_5'Flank|uc002byn.2_5'Flank|uc010usm.1_5'Flank|uc002byr.2_5'Flank|uc002bys.2_5'Flank|uc002byv.2_5'Flank|uc002byx.3_5'Flank|uc002bza.2_5'Flank|uc002bzb.2_5'Flank|uc002bzc.1_5'Flank|uc002bzd.2_5'Flank|uc002bze.2_5'Flank|uc002bzg.2_5'Flank|uc002bzi.1_5'Flank|uc002bzj.2_5'Flank|uc002bzl.2_5'Flank|uc002bzm.2_5'Flank|uc002bzo.2_5'Flank|uc002bzp.2_5'Flank|uc002bzq.2_5'Flank|uc002bzr.2_5'Flank					RecName: Full=Uncharacterized protein C15orf51.; Flags: Fragment;																		AGCAGGCAGACCAAGGAGTTC	0.587000													7	32	---	---	---	---	0	0	0.038147	0	0
LOC283922	283922	broad.mit.edu	37	16	74372644	74372644	+	Silent	SNP	A	G	G			TCGA-EL-A3H8-01A-11D-A20C-08	TCGA-EL-A3H8-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	05186c15-d6e9-4087-9b9e-0b109b8a9826	f57de21a-8553-47a8-9783-ca735dec455a	g.chr16:74372644A>G	uc002fcr.2	-	9	1661	c.315T>C	c.(313-315)CCT>CCC	p.P105P	LOC283922_uc010vms.1_RNA					Homo sapiens cDNA FLJ39449 fis, clone PROST2008360, highly similar to Homo sapiens pyruvate dehydrogenase phosphatase regulatory subunit (PDPR), mRNA.												0						TACCCTTGTCAGGGGGAACAA	0.443000													3	48	---	---	---	---	0	0	0.009096	0	0
DNAH2	146754	broad.mit.edu	37	17	7736520	7736520	+	Missense_Mutation	SNP	C	A	A			TCGA-EL-A3H8-01A-11D-A20C-08	TCGA-EL-A3H8-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	05186c15-d6e9-4087-9b9e-0b109b8a9826	f57de21a-8553-47a8-9783-ca735dec455a	g.chr17:7736520C>A	uc002giu.1	+	84	13124	c.13110C>A	c.(13108-13110)AGC>AGA	p.S4370R		NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	4370					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				CTGCAGAGAGCCGCAAGAAGA	0.622000													6	49	---	---	---	---	2.0095e-06	2.2248e-06	0.029380	1	0
MTMR4	9110	broad.mit.edu	37	17	56572506	56572506	+	Silent	SNP	G	A	A			TCGA-EL-A3H8-01A-11D-A20C-08	TCGA-EL-A3H8-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	05186c15-d6e9-4087-9b9e-0b109b8a9826	f57de21a-8553-47a8-9783-ca735dec455a	g.chr17:56572506G>A	uc002iwj.2	-	16	3107	c.2997C>T	c.(2995-2997)AAC>AAT	p.N999N		NM_004687	NP_004678	Q9NYA4	MTMR4_HUMAN	myotubularin related protein 4	999						cytoplasm|membrane	metal ion binding|protein tyrosine phosphatase activity			skin(1)	1	Medulloblastoma(34;0.127)|all_neural(34;0.237)					GAGAAGGGCAGTTCAGTGGAA	0.507000													5	259	---	---	---	---	0	0	0.014758	0	0
CCDC45	90799	broad.mit.edu	37	17	62512852	62512852	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EL-A3H8-01A-11D-A20C-08	TCGA-EL-A3H8-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	05186c15-d6e9-4087-9b9e-0b109b8a9826	f57de21a-8553-47a8-9783-ca735dec455a	g.chr17:62512852C>T	uc002jem.2	+	5	437	c.379C>T	c.(379-381)CAG>TAG	p.Q127*	CCDC45_uc002jen.2_RNA|CCDC45_uc010wqb.1_Intron	NM_138363	NP_612372	Q96GE4	CEP95_HUMAN	coiled-coil domain containing 45	127						centrosome|spindle pole	protein binding				0	Breast(5;1.32e-14)		BRCA - Breast invasive adenocarcinoma(8;8.6e-12)			TGAAACTGAACAGTATTTTAA	0.368000													13	29	---	---	---	---	0	0	0.146539	0	0
ZNF446	55663	broad.mit.edu	37	19	58992084	58992084	+	Silent	SNP	G	A	A			TCGA-EL-A3H8-01A-11D-A20C-08	TCGA-EL-A3H8-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	05186c15-d6e9-4087-9b9e-0b109b8a9826	f57de21a-8553-47a8-9783-ca735dec455a	g.chr19:58992084G>A	uc002qsz.2	+	7	1461	c.1344G>A	c.(1342-1344)GAG>GAA	p.E448E	ZNF446_uc002qta.2_3'UTR|ZNF446_uc010eur.2_3'UTR|SLC27A5_uc002qtb.2_RNA	NM_017908	NP_060378	Q9NWS9	ZN446_HUMAN	zinc finger protein 446	448	C2H2-type 3.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1		all_cancers(17;1.81e-17)|all_epithelial(17;1.21e-12)|Lung NSC(17;2.8e-05)|all_lung(17;0.000139)|Colorectal(82;0.000147)|Renal(17;0.00528)|all_neural(62;0.0133)|Ovarian(87;0.156)|Medulloblastoma(540;0.232)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0164)|Lung(386;0.179)		ACCGGCCGGAGGTTCCATGAG	0.657000													4	99	---	---	---	---	0	0	0.014758	0	0
LRP1B	53353	broad.mit.edu	37	2	141245239	141245239	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EL-A3H8-01A-11D-A20C-08	TCGA-EL-A3H8-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	05186c15-d6e9-4087-9b9e-0b109b8a9826	f57de21a-8553-47a8-9783-ca735dec455a	g.chr2:141245239G>A	uc002tvj.1	-	58	10162	c.9190C>T	c.(9190-9192)CGA>TGA	p.R3064*		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	3064	Extracellular (Potential).|LDL-receptor class B 28.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		CCATTGGGTCGGCTAGAATCG	0.313000										TSP Lung(27;0.18)			6	86	---	---	---	---	0	0	0.029380	0	0
MIR941-2	100126339	broad.mit.edu	37	20	62551169	62551169	+	RNA	SNP	C	G	G	rs34604519		TCGA-EL-A3H8-01A-11D-A20C-08	TCGA-EL-A3H8-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	05186c15-d6e9-4087-9b9e-0b109b8a9826	f57de21a-8553-47a8-9783-ca735dec455a	g.chr20:62551169C>G	hsa-mir-941-2|MI0005764	+			c.69C>G			DNAJC5_uc002yhf.2_Intron|DNAJC5_uc002yhg.1_Intron|DNAJC5_uc002yhh.2_RNA|MIR941-3_hsa-mir-941-3|MI0005765_5'Flank																	0						CGGCTGTGTGCACATGTGCCC	0.701000													3	39	---	---	---	---	0	0	0.009096	0	0
Unknown	0	broad.mit.edu	37	22	18844763	18844763	+	RNA	SNP	T	C	C			TCGA-EL-A3H8-01A-11D-A20C-08	TCGA-EL-A3H8-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	05186c15-d6e9-4087-9b9e-0b109b8a9826	f57de21a-8553-47a8-9783-ca735dec455a	g.chr22:18844763T>C	uc002zoe.2	+	4		c.2017T>C			uc002zof.2_5'Flank					Homo sapiens cDNA FLJ76361 complete cds.																		TCACAGCCTCTGAGGGCAGCA	0.562000													2	5	---	---	---	---	0	0	0.115264	0	0
LOC100125556	100125556	broad.mit.edu	37	3	125647418	125647418	+	RNA	SNP	A	T	T			TCGA-EL-A3H8-01A-11D-A20C-08	TCGA-EL-A3H8-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	05186c15-d6e9-4087-9b9e-0b109b8a9826	f57de21a-8553-47a8-9783-ca735dec455a	g.chr3:125647418A>T	uc003eif.3	+	5		c.592A>T			LOC100125556_uc003eid.3_RNA|LOC100125556_uc003eie.3_RNA	NR_024251				Homo sapiens family with sequence similarity 86, member A pseudogene, mRNA (cDNA clone IMAGE:4425123).												0						GGAGATGGCAATGCTGAACCT	0.483000													4	242	---	---	---	---	0	0	0.029380	0	0
UROC1	131669	broad.mit.edu	37	3	126226844	126226844	+	Missense_Mutation	SNP	C	T	T			TCGA-EL-A3H8-01A-11D-A20C-08	TCGA-EL-A3H8-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	05186c15-d6e9-4087-9b9e-0b109b8a9826	f57de21a-8553-47a8-9783-ca735dec455a	g.chr3:126226844C>T	uc003eiz.1	-	5	538	c.506G>A	c.(505-507)CGC>CAC	p.R169H	UROC1_uc010hsi.1_Missense_Mutation_p.R169H	NM_144639	NP_653240	Q96N76	HUTU_HUMAN	urocanase domain containing 1 isoform 1	169					histidine catabolic process	cytosol	urocanate hydratase activity			ovary(1)	1				GBM - Glioblastoma multiforme(114;0.17)		TGGGGCACTGCGGCTGCTGGG	0.597000													13	153	---	---	---	---	0	0	0.132662	0	0
BRIX1	55299	broad.mit.edu	37	5	34922857	34922857	+	Missense_Mutation	SNP	T	C	C			TCGA-EL-A3H8-01A-11D-A20C-08	TCGA-EL-A3H8-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	05186c15-d6e9-4087-9b9e-0b109b8a9826	f57de21a-8553-47a8-9783-ca735dec455a	g.chr5:34922857T>C	uc003jja.2	+	6	518	c.494T>C	c.(493-495)CTT>CCT	p.L165P	BRIX1_uc011col.1_Missense_Mutation_p.L165P	NM_018321	NP_060791	Q8TDN6	BRX1_HUMAN	BRIX	165	Brix.				ribosome biogenesis|translation	nucleolus	aminoacyl-tRNA ligase activity|ATP binding|protein binding				0						TCTCGGCCCCTTTTGTCTTTT	0.343000													3	160	---	---	---	---	0	0	0.009096	0	0
EBF1	1879	broad.mit.edu	37	5	158141175	158141175	+	Missense_Mutation	SNP	T	C	C			TCGA-EL-A3H8-01A-11D-A20C-08	TCGA-EL-A3H8-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	05186c15-d6e9-4087-9b9e-0b109b8a9826	f57de21a-8553-47a8-9783-ca735dec455a	g.chr5:158141175T>C	uc010jip.2	-	12	1443	c.1141A>G	c.(1141-1143)AGG>GGG	p.R381G	EBF1_uc011ddw.1_Missense_Mutation_p.R249G|EBF1_uc011ddx.1_Missense_Mutation_p.R382G|EBF1_uc003lxl.3_Missense_Mutation_p.R350G	NM_024007	NP_076870	Q9UH73	COE1_HUMAN	early B-cell factor	381					multicellular organismal development	nucleus	DNA binding|metal ion binding		HMGA2/EBF1(2)	soft_tissue(2)|ovary(1)|central_nervous_system(1)|pancreas(1)	5	Renal(175;0.00196)	Acute lymphoblastic leukemia(3;2.99e-06)|all_hematologic(3;0.000772)|Medulloblastoma(196;0.037)|all_neural(177;0.143)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			TCCGCAGCCCTTTTGAGTATT	0.478000			T	HMGA2	lipoma								4	256	---	---	---	---	0	0	0.021553	0	0
C1GALT1	56913	broad.mit.edu	37	7	7283195	7283195	+	Missense_Mutation	SNP	A	G	G			TCGA-EL-A3H8-01A-11D-A20C-08	TCGA-EL-A3H8-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	05186c15-d6e9-4087-9b9e-0b109b8a9826	f57de21a-8553-47a8-9783-ca735dec455a	g.chr7:7283195A>G	uc010ktn.2	+	4	1152	c.929A>G	c.(928-930)TAT>TGT	p.Y310C	C1GALT1_uc003sra.2_Missense_Mutation_p.Y310C|uc003srb.1_5'Flank	NM_020156	NP_064541	Q9NS00	C1GLT_HUMAN	core 1 synthase,	310	Lumenal (Potential).				angiogenesis|cell differentiation|kidney development	integral to membrane	glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity|metal ion binding				0				UCEC - Uterine corpus endometrioid carcinoma (126;0.177)		TCTTTTCACTATGTTGATTCT	0.353000													5	160	---	---	---	---	0	0	0.029380	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-EL-A3H8-01A-11D-A20C-08	TCGA-EL-A3H8-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	05186c15-d6e9-4087-9b9e-0b109b8a9826	f57de21a-8553-47a8-9783-ca735dec455a	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				31	60	---	---	---	---	0	0	0.059317	0	0
PLP1	5354	broad.mit.edu	37	X	103042754	103042754	+	Missense_Mutation	SNP	G	A	A	rs11543023		TCGA-EL-A3H8-01A-11D-A20C-08	TCGA-EL-A3H8-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	05186c15-d6e9-4087-9b9e-0b109b8a9826	f57de21a-8553-47a8-9783-ca735dec455a	g.chrX:103042754G>A	uc010nov.2	+	5	761	c.481G>A	c.(481-483)GTT>ATT	p.V161I	RAB9B_uc004eli.1_Intron|PLP1_uc004elk.2_Missense_Mutation_p.V161I|PLP1_uc004elj.2_Missense_Mutation_p.V126I|PLP1_uc011msf.1_Missense_Mutation_p.V106I|PLP1_uc010nox.2_Missense_Mutation_p.V115I	NM_001128834	NP_001122306	P60201	MYPR_HUMAN	proteolipid protein 1 isoform 1	161	Helical; Name=3; (Probable).		Missing (in HLD1).		cell death|synaptic transmission	integral to membrane				ovary(1)	1						TGCCCTGACCGTTGTGTGGCT	0.507000													5	229	---	---	---	---	0	0	0.029380	0	0
FUNDC2	65991	broad.mit.edu	37	X	154282927	154282927	+	Silent	SNP	C	T	T			TCGA-EL-A3H8-01A-11D-A20C-08	TCGA-EL-A3H8-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	05186c15-d6e9-4087-9b9e-0b109b8a9826	f57de21a-8553-47a8-9783-ca735dec455a	g.chrX:154282927C>T	uc004fmw.2	+	5	700	c.550C>T	c.(550-552)CTG>TTG	p.L184L		NM_023934	NP_076423	Q9BWH2	FUND2_HUMAN	FUN14 domain containing 2	184						mitochondrion					0	all_cancers(53;3.51e-17)|all_epithelial(53;5.13e-11)|all_lung(58;3.84e-07)|Lung NSC(58;1.2e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					CGGAGGCTTTCTGCTTGGCAT	0.448000													11	253	---	---	---	---	0	0	0.033300	0	0
Unknown	0	broad.mit.edu	37	1	161429081	161429082	+	IGR	INS	-	CT	CT			TCGA-EL-A3H8-01A-11D-A20C-08	TCGA-EL-A3H8-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	05186c15-d6e9-4087-9b9e-0b109b8a9826	f57de21a-8553-47a8-9783-ca735dec455a	g.chr1:161429081_161429082insCT								C1orf192 (91417 upstream) : FCGR2A (46123 downstream)																							acacacacacacacactcacac	0.203													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	35956522	35956522	+	IGR	DEL	C	-	-			TCGA-EL-A3H8-01A-11D-A20C-08	TCGA-EL-A3H8-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	05186c15-d6e9-4087-9b9e-0b109b8a9826	f57de21a-8553-47a8-9783-ca735dec455a	g.chr10:35956522delC								FZD8 (26160 upstream) : None (None downstream)																							atcaccatcaccaccaccatc	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42383711	42383712	+	IGR	INS	-	C	C			TCGA-EL-A3H8-01A-11D-A20C-08	TCGA-EL-A3H8-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	05186c15-d6e9-4087-9b9e-0b109b8a9826	f57de21a-8553-47a8-9783-ca735dec455a	g.chr10:42383711_42383712insC								None (None upstream) : LOC441666 (443603 downstream)																							tcaaatggaatcaaaataacca	0.000													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	11	55785524	55785525	+	IGR	DEL	GT	-	-	rs111452848		TCGA-EL-A3H8-01A-11D-A20C-08	TCGA-EL-A3H8-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	05186c15-d6e9-4087-9b9e-0b109b8a9826	f57de21a-8553-47a8-9783-ca735dec455a	g.chr11:55785524_55785525delGT								OR5F1 (23423 upstream) : OR5AS1 (12370 downstream)																							ccctctctcCGTGTGTGTGTGT	0.228													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	13	107568783	107568791	+	IGR	DEL	CCCCCCCCG	-	-	rs75052047		TCGA-EL-A3H8-01A-11D-A20C-08	TCGA-EL-A3H8-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	05186c15-d6e9-4087-9b9e-0b109b8a9826	f57de21a-8553-47a8-9783-ca735dec455a	g.chr13:107568783_107568791delCCCCCCCCG								ARGLU1 (348269 upstream) : FAM155A (252089 downstream)																							ACAGATGATTccccccccggcccccccgc	0.335													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	1152801	1152802	+	IGR	INS	-	C	C			TCGA-EL-A3H8-01A-11D-A20C-08	TCGA-EL-A3H8-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	05186c15-d6e9-4087-9b9e-0b109b8a9826	f57de21a-8553-47a8-9783-ca735dec455a	g.chr16:1152801_1152802insC								C1QTNF8 (6557 upstream) : CACNA1H (50439 downstream)																							acctcccacagcccccacctcc	0.262													7	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	15991990	15991992	+	IGR	DEL	TCC	-	-			TCGA-EL-A3H8-01A-11D-A20C-08	TCGA-EL-A3H8-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	05186c15-d6e9-4087-9b9e-0b109b8a9826	f57de21a-8553-47a8-9783-ca735dec455a	g.chr16:15991990_15991992delTCC								C16orf63 (9543 upstream) : ABCC1 (51442 downstream)																							ttcatcttcttcctcctcctcct	0.113													3	6	---	---	---	---					
EIF3CL	728689	broad.mit.edu	37	16	28734579	28734581	+	In_Frame_Del	DEL	GAG	-	-			TCGA-EL-A3H8-01A-11D-A20C-08	TCGA-EL-A3H8-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	05186c15-d6e9-4087-9b9e-0b109b8a9826	f57de21a-8553-47a8-9783-ca735dec455a	g.chr16:28734579_28734581delGAG	uc010byj.2	+	9	960_962	c.871_873delGAG	c.(871-873)GAGdel	p.E295del	uc010vct.1_Intron|EIF3CL_uc010byi.2_In_Frame_Del_p.E294del|EIF3CL_uc002dqs.3_In_Frame_Del_p.E294del|EIF3C_uc002dqt.3_In_Frame_Del_p.E294del|EIF3CL_uc010vcy.1_In_Frame_Del_p.E284del|EIF3C_uc002dqu.3_In_Frame_Del_p.E294del|EIF3CL_uc002dqv.3_In_Frame_Del_p.E40del	NM_001099661	NP_001093131	B5ME19	B5ME19_HUMAN	eukaryotic translation initiation factor 3,	295						eukaryotic translation initiation factor 3 complex	translation initiation factor activity				0						GCGCCTGGATGAGGAGGAGGAGG	0.562													8	1036	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	32399771	32399772	+	IGR	DEL	TG	-	-			TCGA-EL-A3H8-01A-11D-A20C-08	TCGA-EL-A3H8-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	05186c15-d6e9-4087-9b9e-0b109b8a9826	f57de21a-8553-47a8-9783-ca735dec455a	g.chr16:32399771_32399772delTG								HERC2P4 (235897 upstream) : TP53TG3B (285069 downstream)																							atttgctgtatgtgtgtgtgtg	0.193													3	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	6464214	6464215	+	IGR	DEL	CT	-	-			TCGA-EL-A3H8-01A-11D-A20C-08	TCGA-EL-A3H8-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	05186c15-d6e9-4087-9b9e-0b109b8a9826	f57de21a-8553-47a8-9783-ca735dec455a	g.chr17:6464214_6464215delCT								PITPNM3 (4337 upstream) : KIAA0753 (17431 downstream)																							tcctccgcccctcctcttcctc	0.000													4	3	---	---	---	---					
MLLT6	4302	broad.mit.edu	37	17	36861701	36861703	+	5'Flank	DEL	GAG	-	-			TCGA-EL-A3H8-01A-11D-A20C-08	TCGA-EL-A3H8-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	05186c15-d6e9-4087-9b9e-0b109b8a9826	f57de21a-8553-47a8-9783-ca735dec455a	g.chr17:36861701_36861703delGAG	uc002hqi.3	+						MLLT6_uc010wdr.1_5'Flank|MLLT6_uc010cvm.1_5'Flank	NM_005937	NP_005928	P55198	AF17_HUMAN	myeloid/lymphoid or mixed-lineage leukemia						regulation of transcription, DNA-dependent	nucleus	protein binding|zinc ion binding			breast(3)|prostate(1)|lung(1)|skin(1)	6	Breast(7;4.43e-21)					CAGAGCGAGCgaggaggaggagg	0.443			T	MLL	AL								3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	38175238	38175240	+	IGR	DEL	TCC	-	-			TCGA-EL-A3H8-01A-11D-A20C-08	TCGA-EL-A3H8-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	05186c15-d6e9-4087-9b9e-0b109b8a9826	f57de21a-8553-47a8-9783-ca735dec455a	g.chr17:38175238_38175240delTCC								CSF3 (1173 upstream) : MED24 (111 downstream)																							CTGCTCCTCTTCCTCCTCCTCCT	0.631													3	6	---	---	---	---					
TTYH2	94015	broad.mit.edu	37	17	72209620	72209621	+	5'Flank	INS	-	C	C			TCGA-EL-A3H8-01A-11D-A20C-08	TCGA-EL-A3H8-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	05186c15-d6e9-4087-9b9e-0b109b8a9826	f57de21a-8553-47a8-9783-ca735dec455a	g.chr17:72209620_72209621insC	uc002jkc.2	+						TTYH2_uc010wqw.1_5'Flank|MGC16275_uc002jkb.2_5'Flank	NM_032646	NP_116035	Q9BSA4	TTYH2_HUMAN	tweety 2 isoform 1							chloride channel complex|plasma membrane	chloride channel activity|protein binding			ovary(3)|large_intestine(1)	4						ggcggggcgggcgcgggcccag	0.475													5	1	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	75913596	75913597	+	IGR	INS	-	AGA	AGA	rs142406708	by1000genomes	TCGA-EL-A3H8-01A-11D-A20C-08	TCGA-EL-A3H8-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	05186c15-d6e9-4087-9b9e-0b109b8a9826	f57de21a-8553-47a8-9783-ca735dec455a	g.chr17:75913596_75913597insAGA								FLJ45079 (33427 upstream) : TNRC6C (86721 downstream)																							gaaggagaaggagaaggaggag	0.010													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	22	35111551	35111551	+	IGR	DEL	G	-	-			TCGA-EL-A3H8-01A-11D-A20C-08	TCGA-EL-A3H8-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	05186c15-d6e9-4087-9b9e-0b109b8a9826	f57de21a-8553-47a8-9783-ca735dec455a	g.chr22:35111551delG								LARGE (792967 upstream) : ISX (350578 downstream)																							gtgccccattgctttctgttc	0.045													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	3	525305	525305	+	IGR	DEL	G	-	-			TCGA-EL-A3H8-01A-11D-A20C-08	TCGA-EL-A3H8-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	05186c15-d6e9-4087-9b9e-0b109b8a9826	f57de21a-8553-47a8-9783-ca735dec455a	g.chr3:525305delG								CHL1 (74210 upstream) : CNTN6 (609315 downstream)																							TAGTgggggcgggggggggcg	0.308													4	3	---	---	---	---					
LRIG1	26018	broad.mit.edu	37	3	66436625	66436627	+	In_Frame_Del	DEL	GCT	-	-			TCGA-EL-A3H8-01A-11D-A20C-08	TCGA-EL-A3H8-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	05186c15-d6e9-4087-9b9e-0b109b8a9826	f57de21a-8553-47a8-9783-ca735dec455a	g.chr3:66436625_66436627delGCT	uc003dmx.2	-	13	1581_1583	c.1567_1569delAGC	c.(1567-1569)AGCdel	p.S524del	SLC25A26_uc011bft.1_RNA|LRIG1_uc011bfu.1_In_Frame_Del_p.S144del|LRIG1_uc003dmw.2_In_Frame_Del_p.S190del|LRIG1_uc010hnz.2_In_Frame_Del_p.S240del|LRIG1_uc010hoa.2_In_Frame_Del_p.S548del	NM_015541	NP_056356	Q96JA1	LRIG1_HUMAN	leucine-rich repeats and immunoglobulin-like	524	Extracellular (Potential).|Ig-like C2-type 1.|Poly-Ser.					integral to membrane				skin(3)|ovary(2)	5		Lung NSC(201;0.0101)		BRCA - Breast invasive adenocarcinoma(55;0.00047)		TCATGGGGGAGCTGCTGCTGCTG	0.547													7	584	---	---	---	---					
Unknown	0	broad.mit.edu	37	3	180777990	180777990	+	IGR	DEL	T	-	-			TCGA-EL-A3H8-01A-11D-A20C-08	TCGA-EL-A3H8-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	05186c15-d6e9-4087-9b9e-0b109b8a9826	f57de21a-8553-47a8-9783-ca735dec455a	g.chr3:180777990delT								DNAJC19 (70460 upstream) : SOX2OT (503519 downstream)																							tgtgtgtgtgtgtggtggtgg	0.264													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	1750962	1750962	+	IGR	DEL	C	-	-			TCGA-EL-A3H8-01A-11D-A20C-08	TCGA-EL-A3H8-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	05186c15-d6e9-4087-9b9e-0b109b8a9826	f57de21a-8553-47a8-9783-ca735dec455a	g.chr4:1750962delC								TACC3 (4067 upstream) : FGFR3 (44077 downstream)																							ctccccacctcccccctcccc	0.134													3	4	---	---	---	---					
POU4F2	5458	broad.mit.edu	37	4	147560457	147560458	+	In_Frame_Ins	INS	-	GGC	GGC	rs67907220		TCGA-EL-A3H8-01A-11D-A20C-08	TCGA-EL-A3H8-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	05186c15-d6e9-4087-9b9e-0b109b8a9826	f57de21a-8553-47a8-9783-ca735dec455a	g.chr4:147560457_147560458insGGC	uc003ikv.2	+	1	413_414	c.165_166insGGC	c.(163-168)insGGC	p.68_69insG		NM_004575	NP_004566	Q12837	PO4F2_HUMAN	Brn3b POU domain transcription factor	68_69					estrogen receptor signaling pathway|MAPKKK cascade|negative regulation of transcription from RNA polymerase II promoter	nuclear speck	RNA polymerase II core promoter proximal region sequence-specific DNA binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription			breast(1)	1	all_hematologic(180;0.151)					ACGCTggtggtggcggcggcgg	0.386													4	8	---	---	---	---					
PCDHB4	56131	broad.mit.edu	37	5	140502486	140502487	+	Frame_Shift_Ins	INS	-	A	A			TCGA-EL-A3H8-01A-11D-A20C-08	TCGA-EL-A3H8-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	05186c15-d6e9-4087-9b9e-0b109b8a9826	f57de21a-8553-47a8-9783-ca735dec455a	g.chr5:140502486_140502487insA	uc003lip.1	+	1	906_907	c.906_907insA	c.(904-909)TTGAAAfs	p.L302fs		NM_018938	NP_061761	Q9Y5E5	PCDB4_HUMAN	protocadherin beta 4 precursor	302_303	Cadherin 3.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	cytoplasm|integral to plasma membrane|intermediate filament cytoskeleton	calcium ion binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AAATACTGTTGAAAAAAAAATT	0.366													10	168	---	---	---	---					
Unknown	0	broad.mit.edu	37	8	92432298	92432300	+	IGR	DEL	TGC	-	-			TCGA-EL-A3H8-01A-11D-A20C-08	TCGA-EL-A3H8-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	05186c15-d6e9-4087-9b9e-0b109b8a9826	f57de21a-8553-47a8-9783-ca735dec455a	g.chr8:92432298_92432300delTGC								SLC26A7 (21918 upstream) : RUNX1T1 (538852 downstream)																							AATAGCTGTTtgctgctgctgct	0.369													3	6	---	---	---	---					
DPYS	1807	broad.mit.edu	37	8	105440214	105440214	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EL-A3H8-01A-11D-A20C-08	TCGA-EL-A3H8-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	05186c15-d6e9-4087-9b9e-0b109b8a9826	f57de21a-8553-47a8-9783-ca735dec455a	g.chr8:105440214delT	uc003yly.3	-	6	1215	c.1086delA	c.(1084-1086)AAAfs	p.K362fs		NM_001385	NP_001376	Q14117	DPYS_HUMAN	dihydropyrimidinase	362					protein homotetramerization|pyrimidine nucleoside catabolic process|thymine catabolic process|uracil catabolic process	cytosol	dihydropyrimidinase activity|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2			OV - Ovarian serous cystadenocarcinoma(57;1.61e-06)|STAD - Stomach adenocarcinoma(118;0.229)			CCACCACGCCTTTTTCCCATA	0.478													8	461	---	---	---	---					
Unknown	0	broad.mit.edu	37	X	106693183	106693185	+	IGR	DEL	GGA	-	-			TCGA-EL-A3H8-01A-11D-A20C-08	TCGA-EL-A3H8-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	05186c15-d6e9-4087-9b9e-0b109b8a9826	f57de21a-8553-47a8-9783-ca735dec455a	g.chrX:106693183_106693185delGGA								CXorf41 (205711 upstream) : PRPS1 (178469 downstream)																							cTgaggaggcggaggaggaggag	0.335													2	4	---	---	---	---					
SPANXN2	494119	broad.mit.edu	37	X	142803692	142803692	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EL-A3H8-01A-11D-A20C-08	TCGA-EL-A3H8-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	05186c15-d6e9-4087-9b9e-0b109b8a9826	f57de21a-8553-47a8-9783-ca735dec455a	g.chrX:142803692delT	uc004fbz.2	-	1	825	c.71delA	c.(70-72)AATfs	p.N24fs		NM_001009615	NP_001009615	Q5MJ10	SPXN2_HUMAN	SPANX-N2 protein	24										ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					TACCTCATCATTTTTTTTGTT	0.239													7	246	---	---	---	---					
