Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
PUM1	9698	broad.mit.edu	37	1	31532162	31532162	+	Missense_Mutation	SNP	G	C	C			TCGA-EL-A3T6-01A-11D-A21Z-08	TCGA-EL-A3T6-11A-11D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	5140ce7c-fceb-49d3-9c00-5dcb081ca0c0	021c6d1e-4b0c-4270-9bb5-9f1ce9d24fd3	g.chr1:31532162G>C	uc001bsi.1	-	2	365	c.252C>G	c.(250-252)TTC>TTG	p.F84L	PUM1_uc001bsh.1_Missense_Mutation_p.F84L|PUM1_uc001bsj.1_Missense_Mutation_p.F84L|PUM1_uc010oga.1_Missense_Mutation_p.F84L|PUM1_uc001bsk.1_Missense_Mutation_p.F120L|PUM1_uc010ogb.1_Missense_Mutation_p.F120L	NM_014676	NP_055491	Q14671	PUM1_HUMAN	pumilio 1 isoform 2	84					cellular membrane organization|post-Golgi vesicle-mediated transport|regulation of translation	cytosol	RNA binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Colorectal(325;0.0211)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0308)|all_neural(195;0.0381)|Breast(348;0.0848)|Medulloblastoma(700;0.123)		STAD - Stomach adenocarcinoma(196;0.0232)|READ - Rectum adenocarcinoma(331;0.0681)		GCCTCTGAAAGAAGTAGTCCA	0.542000													4	99	---	---	---	---	0	0	0.009096	0	0
Unknown	0	broad.mit.edu	37	1	179557417	179557417	+	5'Flank	SNP	A	G	G			TCGA-EL-A3T6-01A-11D-A21Z-08	TCGA-EL-A3T6-11A-11D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	5140ce7c-fceb-49d3-9c00-5dcb081ca0c0	021c6d1e-4b0c-4270-9bb5-9f1ce9d24fd3	g.chr1:179557417A>G	uc001gmt.2	-						uc010pnm.1_5'Flank|uc001gmu.2_5'Flank|uc001gmv.2_5'Flank|uc001gmw.2_5'Flank|uc001gmx.2_RNA					DQ571986																		CTCACTGGCCAAACGTGGCAC	0.537000													8	38	---	---	---	---	0	0	0.069234	0	0
USH2A	7399	broad.mit.edu	37	1	216390846	216390846	+	Missense_Mutation	SNP	A	G	G			TCGA-EL-A3T6-01A-11D-A21Z-08	TCGA-EL-A3T6-11A-11D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	5140ce7c-fceb-49d3-9c00-5dcb081ca0c0	021c6d1e-4b0c-4270-9bb5-9f1ce9d24fd3	g.chr1:216390846A>G	uc001hku.1	-	15	3427	c.3040T>C	c.(3040-3042)TGT>CGT	p.C1014R	USH2A_uc001hkv.2_Missense_Mutation_p.C1014R	NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	1014	Laminin EGF-like 10.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		ACCAAGTGACAGGTTTCATTC	0.403000										HNSCC(13;0.011)			16	37	---	---	---	---	0	0	0.028581	0	0
LOC642846	642846	broad.mit.edu	37	12	9447432	9447432	+	Missense_Mutation	SNP	C	G	G			TCGA-EL-A3T6-01A-11D-A21Z-08	TCGA-EL-A3T6-11A-11D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	5140ce7c-fceb-49d3-9c00-5dcb081ca0c0	021c6d1e-4b0c-4270-9bb5-9f1ce9d24fd3	g.chr12:9447432C>G	uc010sgq.1	+	5	513	c.422C>G	c.(421-423)ACA>AGA	p.T141R	LOC642846_uc010sgp.1_RNA|LOC642846_uc009zgn.1_5'UTR|LOC642846_uc001qvo.2_5'UTR					SubName: Full=cDNA FLJ60032, highly similar to Probable ATP-dependent RNA helicase DDX11 (EC 3.6.1.-);												0						GAAGAAGAAACAGAGAATCTC	0.632000													2	11	---	---	---	---	0	0	0.004672	0	0
SYT1	6857	broad.mit.edu	37	12	79747297	79747297	+	Missense_Mutation	SNP	G	A	A			TCGA-EL-A3T6-01A-11D-A21Z-08	TCGA-EL-A3T6-11A-11D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	5140ce7c-fceb-49d3-9c00-5dcb081ca0c0	021c6d1e-4b0c-4270-9bb5-9f1ce9d24fd3	g.chr12:79747297G>A	uc001sys.2	+	10	1497	c.826G>A	c.(826-828)GAT>AAT	p.D276N	SYT1_uc001syt.2_Missense_Mutation_p.D276N|SYT1_uc001syu.2_Missense_Mutation_p.D273N|SYT1_uc001syv.2_Missense_Mutation_p.D276N	NM_001135805	NP_001129277	P21579	SYT1_HUMAN	synaptotagmin I	276	Cytoplasmic (Potential).|Phospholipid binding (Probable).				detection of calcium ion|glutamate secretion|neurotransmitter secretion|protein homooligomerization	cell junction|chromaffin granule membrane|clathrin sculpted acetylcholine transport vesicle membrane|clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|clathrin sculpted glutamate transport vesicle membrane|clathrin sculpted monoamine transport vesicle membrane|endocytic vesicle membrane|integral to membrane|synaptic vesicle membrane	1-phosphatidylinositol binding|low-density lipoprotein particle receptor binding|metal ion binding|syntaxin-1 binding|transporter activity			skin(3)|pancreas(2)|ovary(1)	6						GAAATTGGGTGATATCTGCTT	0.363000													5	149	---	---	---	---	0	0	0.021553	0	0
DYNC1H1	1778	broad.mit.edu	37	14	102466737	102466737	+	Splice_Site	SNP	G	T	T			TCGA-EL-A3T6-01A-11D-A21Z-08	TCGA-EL-A3T6-11A-11D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	5140ce7c-fceb-49d3-9c00-5dcb081ca0c0	021c6d1e-4b0c-4270-9bb5-9f1ce9d24fd3	g.chr14:102466737G>T	uc001yks.2	+	18	4238	c.4074_splice	c.e18+1	p.K1358_splice		NM_001376	NP_001367	Q14204	DYHC1_HUMAN	cytoplasmic dynein 1 heavy chain 1						cytoplasmic mRNA processing body assembly|G2/M transition of mitotic cell cycle|microtubule-based movement|mitotic spindle organization|stress granule assembly|transport	centrosome|cytoplasmic dynein complex|cytosol|Golgi apparatus|microtubule	ATP binding|ATPase activity, coupled|microtubule motor activity|protein binding			ovary(7)|central_nervous_system(2)|pancreas(1)	10						GCCTCGAAAGGTATATCATGA	0.403000													12	27	---	---	---	---	2.27111e-07	2.64963e-07	0.013537	1	0
NXN	64359	broad.mit.edu	37	17	726925	726925	+	Missense_Mutation	SNP	C	T	T			TCGA-EL-A3T6-01A-11D-A21Z-08	TCGA-EL-A3T6-11A-11D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	5140ce7c-fceb-49d3-9c00-5dcb081ca0c0	021c6d1e-4b0c-4270-9bb5-9f1ce9d24fd3	g.chr17:726925C>T	uc002fsa.2	-	3	651	c.559G>A	c.(559-561)GAG>AAG	p.E187K	NXN_uc002fsb.1_Missense_Mutation_p.E74K|NXN_uc010vqd.1_5'Flank|NXN_uc002frz.2_5'UTR|NXN_uc010vqe.1_Missense_Mutation_p.E79K	NM_022463	NP_071908	Q6DKJ4	NXN_HUMAN	nucleoredoxin	187	Thioredoxin.				cell differentiation|cell redox homeostasis|multicellular organismal development|Wnt receptor signaling pathway	cytosol|nucleus	protein-disulfide reductase activity			ovary(2)|breast(1)|pancreas(1)	4				UCEC - Uterine corpus endometrioid carcinoma (25;0.0237)		CTGCTGCTCTCCAGAGACTGC	0.552000													3	55	---	---	---	---	0	0	0.004672	0	0
LOC401010	401010	broad.mit.edu	37	2	132201202	132201202	+	Missense_Mutation	SNP	G	A	A	rs77064210	by1000genomes	TCGA-EL-A3T6-01A-11D-A21Z-08	TCGA-EL-A3T6-11A-11D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	5140ce7c-fceb-49d3-9c00-5dcb081ca0c0	021c6d1e-4b0c-4270-9bb5-9f1ce9d24fd3	g.chr2:132201202G>A	uc002tst.2	-	1	1266	c.800C>T	c.(799-801)ACT>ATT	p.T267I		NR_002826				SubName: Full=cDNA FLJ12694 fis, clone NT2RP1000358, highly similar to Homo sapiens mRNA; cDNA DKFZp564C186 (from clone DKFZp564C186);												0						GGGGCCCACAGTGCTCAGGAC	0.567000													8	26	---	---	---	---	0	0	0.058154	0	0
ADARB1	104	broad.mit.edu	37	21	46624644	46624644	+	Missense_Mutation	SNP	G	C	C			TCGA-EL-A3T6-01A-11D-A21Z-08	TCGA-EL-A3T6-11A-11D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	5140ce7c-fceb-49d3-9c00-5dcb081ca0c0	021c6d1e-4b0c-4270-9bb5-9f1ce9d24fd3	g.chr21:46624644G>C	uc002zgy.2	+	10	2295	c.1860G>C	c.(1858-1860)TTG>TTC	p.L620F	ADARB1_uc002zgr.2_Missense_Mutation_p.L620F|ADARB1_uc002zgs.2_RNA|ADARB1_uc002zgw.2_Missense_Mutation_p.L580F|ADARB1_uc002zgv.2_RNA|ADARB1_uc002zgt.2_Missense_Mutation_p.L580F|ADARB1_uc010gpx.2_RNA|ADARB1_uc002zgq.2_RNA|ADARB1_uc002zgu.2_RNA	NM_015833	NP_056648	P78563	RED1_HUMAN	RNA-specific adenosine deaminase B1 isoform 2	620	A to I editase.				adenosine to inosine editing|mRNA modification|mRNA processing|RNA processing	nucleoplasm|nucleus	double-stranded RNA adenosine deaminase activity|double-stranded RNA adenosine deaminase activity|double-stranded RNA binding|double-stranded RNA binding|metal ion binding|mRNA binding|RNA binding			skin(1)	1				Colorectal(79;0.115)		ACAAGCCTTTGCTCAGTGGCA	0.488000													25	35	---	---	---	---	0	0	0.030593	0	0
MAP4	4134	broad.mit.edu	37	3	47958225	47958225	+	Silent	SNP	T	C	C			TCGA-EL-A3T6-01A-11D-A21Z-08	TCGA-EL-A3T6-11A-11D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	5140ce7c-fceb-49d3-9c00-5dcb081ca0c0	021c6d1e-4b0c-4270-9bb5-9f1ce9d24fd3	g.chr3:47958225T>C	uc003csb.2	-	7	1618	c.1092A>G	c.(1090-1092)TTA>TTG	p.L364L	MAP4_uc003csc.3_Silent_p.L364L|MAP4_uc011bbf.1_Silent_p.L341L|MAP4_uc003csf.3_Silent_p.L381L	NM_002375	NP_002366	P27816	MAP4_HUMAN	microtubule-associated protein 4 isoform 1	364	26 residues 1.|17 X 14 AA tandem repeats.				negative regulation of microtubule depolymerization	cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(2)|pancreas(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.000721)|KIRC - Kidney renal clear cell carcinoma(197;0.00641)|Kidney(197;0.00736)		TGGAAGGGGCTAAGTCCATTT	0.478000													3	184	---	---	---	---	0	0	0.004672	0	0
PRDM8	56978	broad.mit.edu	37	4	81124557	81124557	+	Silent	SNP	C	T	T			TCGA-EL-A3T6-01A-11D-A21Z-08	TCGA-EL-A3T6-11A-11D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	5140ce7c-fceb-49d3-9c00-5dcb081ca0c0	021c6d1e-4b0c-4270-9bb5-9f1ce9d24fd3	g.chr4:81124557C>T	uc010ijo.2	+	8	2780	c.1941C>T	c.(1939-1941)CAC>CAT	p.H647H	PRDM8_uc003hmb.3_Silent_p.H647H|PRDM8_uc003hmc.3_Silent_p.H647H	NM_020226	NP_064611	Q9NQV8	PRDM8_HUMAN	PR domain containing 8	647	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						TGAGGTCGCACCACAAAAAGG	0.592000													13	26	---	---	---	---	0	0	0.020292	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-EL-A3T6-01A-11D-A21Z-08	TCGA-EL-A3T6-11A-11D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	5140ce7c-fceb-49d3-9c00-5dcb081ca0c0	021c6d1e-4b0c-4270-9bb5-9f1ce9d24fd3	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				24	48	---	---	---	---	0	0	0.024334	0	0
DCAF12	25853	broad.mit.edu	37	9	34107509	34107509	+	Missense_Mutation	SNP	C	A	A			TCGA-EL-A3T6-01A-11D-A21Z-08	TCGA-EL-A3T6-11A-11D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	5140ce7c-fceb-49d3-9c00-5dcb081ca0c0	021c6d1e-4b0c-4270-9bb5-9f1ce9d24fd3	g.chr9:34107509C>A	uc003ztt.2	-	3	730	c.388G>T	c.(388-390)GAC>TAC	p.D130Y		NM_015397	NP_056212	Q5T6F0	DCA12_HUMAN	DDB1 and CUL4 associated factor 12	130						centrosome|CUL4 RING ubiquitin ligase complex					0						GGCTCCCGGTCTTTCAGAATG	0.488000													12	57	---	---	---	---	0.00136819	0.00151221	0.013537	1	0
Unknown	0	broad.mit.edu	37	MT	3392	3392	+	RNA	SNP	G	A	A			TCGA-EL-A3T6-01A-11D-A21Z-08	TCGA-EL-A3T6-11A-11D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	5140ce7c-fceb-49d3-9c00-5dcb081ca0c0	021c6d1e-4b0c-4270-9bb5-9f1ce9d24fd3	g.chrM:3392G>A	uc004cos.3	+	2		c.1685G>A			uc011mfh.1_5'Flank					Homo sapiens mRNA expressed only in placental villi, clone SMAP47.																		AAAAATTCTAGGCTATATACA	0.438000													8	0	---	---	---	---	0	0	0.047766	0	0
Unknown	0	broad.mit.edu	37	1	47310359	47310360	+	IGR	INS	-	T	T			TCGA-EL-A3T6-01A-11D-A21Z-08	TCGA-EL-A3T6-11A-11D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	5140ce7c-fceb-49d3-9c00-5dcb081ca0c0	021c6d1e-4b0c-4270-9bb5-9f1ce9d24fd3	g.chr1:47310359_47310360insT								CYP4B1 (25339 upstream) : CYP4Z2P (13546 downstream)																							CAAAAACAAAACCCTAGATATT	0.421													3	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	28629256	28629256	+	IGR	DEL	A	-	-			TCGA-EL-A3T6-01A-11D-A21Z-08	TCGA-EL-A3T6-11A-11D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	5140ce7c-fceb-49d3-9c00-5dcb081ca0c0	021c6d1e-4b0c-4270-9bb5-9f1ce9d24fd3	g.chr10:28629256delA								MPP7 (37261 upstream) : WAC (192171 downstream)																							AAAGTAAATGAAAACAGTGAA	0.328													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	12	48318868	48318869	+	IGR	INS	-	GAA	GAA	rs144331123		TCGA-EL-A3T6-01A-11D-A21Z-08	TCGA-EL-A3T6-11A-11D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	5140ce7c-fceb-49d3-9c00-5dcb081ca0c0	021c6d1e-4b0c-4270-9bb5-9f1ce9d24fd3	g.chr12:48318868_48318869insGAA								VDR (20054 upstream) : TMEM106C (38461 downstream)																							aggaggaggaggaAGCAGCTTA	0.178													2	4	---	---	---	---					
POP5	51367	broad.mit.edu	37	12	121017154	121017156	+	In_Frame_Del	DEL	CTC	-	-			TCGA-EL-A3T6-01A-11D-A21Z-08	TCGA-EL-A3T6-11A-11D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	5140ce7c-fceb-49d3-9c00-5dcb081ca0c0	021c6d1e-4b0c-4270-9bb5-9f1ce9d24fd3	g.chr12:121017154_121017156delCTC	uc001tys.2	-	5	489_491	c.457_459delGAG	c.(457-459)GAGdel	p.E153del	POP5_uc001tyt.2_In_Frame_Del_p.E103del	NM_015918	NP_057002	Q969H6	POP5_HUMAN	processing of precursor 5 isoform a	153					tRNA processing		protein binding|ribonuclease P activity				0	all_neural(191;0.077)|Medulloblastoma(191;0.0922)					CCTCACCTGACTCCTCCTCCTCC	0.517													7	204	---	---	---	---					
Unknown	0	broad.mit.edu	37	13	114026073	114026073	+	IGR	DEL	C	-	-			TCGA-EL-A3T6-01A-11D-A21Z-08	TCGA-EL-A3T6-11A-11D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	5140ce7c-fceb-49d3-9c00-5dcb081ca0c0	021c6d1e-4b0c-4270-9bb5-9f1ce9d24fd3	g.chr13:114026073delC								GRTP1 (7610 upstream) : ADPRHL1 (50187 downstream)																							cctcctgagaccccctccctc	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	9250813	9250813	+	IGR	DEL	T	-	-	rs115093816	by1000genomes	TCGA-EL-A3T6-01A-11D-A21Z-08	TCGA-EL-A3T6-11A-11D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	5140ce7c-fceb-49d3-9c00-5dcb081ca0c0	021c6d1e-4b0c-4270-9bb5-9f1ce9d24fd3	g.chr16:9250813delT								C16orf72 (37268 upstream) : GRIN2A (596454 downstream)																							cggagccctcttttttttttt	0.164													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	131236257	131236257	+	IGR	DEL	G	-	-			TCGA-EL-A3T6-01A-11D-A21Z-08	TCGA-EL-A3T6-11A-11D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	5140ce7c-fceb-49d3-9c00-5dcb081ca0c0	021c6d1e-4b0c-4270-9bb5-9f1ce9d24fd3	g.chr2:131236257delG								PTPN18 (103276 upstream) : CFC1B (42579 downstream)																							TTTCTTTTCTGGCAGCTGTGA	0.428													3	6	---	---	---	---					
DDX27	55661	broad.mit.edu	37	20	47858504	47858504	+	Frame_Shift_Del	DEL	A	-	-			TCGA-EL-A3T6-01A-11D-A21Z-08	TCGA-EL-A3T6-11A-11D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	5140ce7c-fceb-49d3-9c00-5dcb081ca0c0	021c6d1e-4b0c-4270-9bb5-9f1ce9d24fd3	g.chr20:47858504delA	uc002xuh.2	+	17	2126	c.2065delA	c.(2065-2067)AAAfs	p.K689fs		NM_017895	NP_060365	Q96GQ7	DDX27_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	689						nucleus	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			kidney(2)	2			BRCA - Breast invasive adenocarcinoma(12;0.000899)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			GAAGGATGCCAAAAAAAAGGG	0.488													7	62	---	---	---	---					
Unknown	0	broad.mit.edu	37	3	893481	893483	+	IGR	DEL	GGT	-	-			TCGA-EL-A3T6-01A-11D-A21Z-08	TCGA-EL-A3T6-11A-11D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	5140ce7c-fceb-49d3-9c00-5dcb081ca0c0	021c6d1e-4b0c-4270-9bb5-9f1ce9d24fd3	g.chr3:893481_893483delGGT								CHL1 (442386 upstream) : CNTN6 (241137 downstream)																							atactctgggggtggtggtggtg	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	3	128164984	128164986	+	IGR	DEL	TGG	-	-			TCGA-EL-A3T6-01A-11D-A21Z-08	TCGA-EL-A3T6-11A-11D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	5140ce7c-fceb-49d3-9c00-5dcb081ca0c0	021c6d1e-4b0c-4270-9bb5-9f1ce9d24fd3	g.chr3:128164984_128164986delTGG								EEFSEC (37496 upstream) : DNAJB8 (16296 downstream)																							gtggtggtgatggtggtggtggt	0.000													4	3	---	---	---	---					
