Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
RERE	473	broad.mit.edu	37	1	8526058	8526058	+	Missense_Mutation	SNP	C	T	T			TCGA-EM-A1CT-01A-11D-A13W-08	TCGA-EM-A1CT-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ae598be-7039-4405-a512-974ad04a6696	77465209-02c9-488e-af29-1e23934a2e6d	g.chr1:8526058C>T	uc001ape.2	-	12	1940	c.1130G>A	c.(1129-1131)GGC>GAC	p.G377D	RERE_uc001apf.2_Missense_Mutation_p.G377D|RERE_uc010nzx.1_Missense_Mutation_p.G109D|RERE_uc001aph.1_Missense_Mutation_p.G377D	NM_012102	NP_036234	Q9P2R6	RERE_HUMAN	atrophin-1 like protein isoform a	377	ELM2.				multicellular organismal development|NLS-bearing substrate import into nucleus	mitochondrion	poly-glutamine tract binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2	Ovarian(185;0.0661)	all_epithelial(116;1.17e-21)|all_lung(118;1.4e-06)|Lung NSC(185;3.06e-06)|Renal(390;0.000147)|Breast(348;0.000206)|Colorectal(325;0.00187)|Hepatocellular(190;0.00825)|Ovarian(437;0.0253)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;9.64e-67)|GBM - Glioblastoma multiforme(8;9.89e-33)|Colorectal(212;1.45e-07)|COAD - Colon adenocarcinoma(227;3.42e-05)|Kidney(185;6e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000533)|KIRC - Kidney renal clear cell carcinoma(229;0.00106)|STAD - Stomach adenocarcinoma(132;0.00118)|READ - Rectum adenocarcinoma(331;0.0419)|Lung(427;0.195)		CAGGGCTTTGCCAGCATCGTA	0.507000													3	45	---	---	---	---	0	0	0.004672	0	0
KIAA0467	23334	broad.mit.edu	37	1	43882304	43882304	+	Missense_Mutation	SNP	T	G	G			TCGA-EM-A1CT-01A-11D-A13W-08	TCGA-EM-A1CT-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ae598be-7039-4405-a512-974ad04a6696	77465209-02c9-488e-af29-1e23934a2e6d	g.chr1:43882304T>G	uc009vws.1	+	7	955	c.871T>G	c.(871-873)TTT>GTT	p.F291V				Q5T011	SZT2_HUMAN	Homo sapiens mRNA for KIAA0467 protein, partial cds.	291						peroxisome					0	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				GGCTTGTTCCTTTGTCCAGGT	0.483000													12	8	---	---	---	---	0	0	0.013537	0	0
DBT	1629	broad.mit.edu	37	1	100681607	100681607	+	Missense_Mutation	SNP	A	G	G			TCGA-EM-A1CT-01A-11D-A13W-08	TCGA-EM-A1CT-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ae598be-7039-4405-a512-974ad04a6696	77465209-02c9-488e-af29-1e23934a2e6d	g.chr1:100681607A>G	uc001dta.2	-	6	737	c.704T>C	c.(703-705)ATG>ACG	p.M235T	DBT_uc010oug.1_Missense_Mutation_p.M54T	NM_001918	NP_001909	P11182	ODB2_HUMAN	dihydrolipoamide branched chain transacylase	235					branched chain family amino acid catabolic process|fatty-acyl-CoA biosynthetic process	microtubule cytoskeleton|mitochondrial alpha-ketoglutarate dehydrogenase complex|mitochondrial nucleoid	acyltransferase activity|cofactor binding|dihydrolipoyllysine-residue (2-methylpropanoyl)transferase activity|protein binding			pancreas(1)	1		all_epithelial(167;5.4e-06)|all_lung(203;0.00125)|Lung NSC(277;0.00131)		Epithelial(280;0.0739)|all cancers(265;0.123)|COAD - Colon adenocarcinoma(174;0.154)|Lung(183;0.199)		AGGAACAGTCATGTCTTTTGG	0.373000													114	175	---	---	---	---	0	0	0.014410	0	0
DENND4B	9909	broad.mit.edu	37	1	153906083	153906083	+	Missense_Mutation	SNP	C	T	T			TCGA-EM-A1CT-01A-11D-A13W-08	TCGA-EM-A1CT-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ae598be-7039-4405-a512-974ad04a6696	77465209-02c9-488e-af29-1e23934a2e6d	g.chr1:153906083C>T	uc001fdd.1	-	20	3607	c.3206G>A	c.(3205-3207)CGC>CAC	p.R1069H	uc001fdc.1_Intron	NM_014856	NP_055671	O75064	DEN4B_HUMAN	DENN/MADD domain containing 4B	1069										ovary(1)	1	all_lung(78;2.89e-32)|Lung NSC(65;2.27e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)			AGGGGAGTGGCGGGAAGGAGT	0.711000													6	11	---	---	---	---	0	0	0.001984	0	0
HMCN1	83872	broad.mit.edu	37	1	185969305	185969305	+	Missense_Mutation	SNP	G	C	C			TCGA-EM-A1CT-01A-11D-A13W-08	TCGA-EM-A1CT-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ae598be-7039-4405-a512-974ad04a6696	77465209-02c9-488e-af29-1e23934a2e6d	g.chr1:185969305G>C	uc001grq.1	+	26	4232	c.4003G>C	c.(4003-4005)GAG>CAG	p.E1335Q		NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	1335	Ig-like C2-type 10.				response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						TGACAATGGGGAGTACATCTG	0.418000													67	68	---	---	---	---	0	0	0.014410	0	0
C1orf115	79762	broad.mit.edu	37	1	220869983	220869983	+	Silent	SNP	C	T	T			TCGA-EM-A1CT-01A-11D-A13W-08	TCGA-EM-A1CT-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ae598be-7039-4405-a512-974ad04a6696	77465209-02c9-488e-af29-1e23934a2e6d	g.chr1:220869983C>T	uc001hmp.1	+	2	456	c.339C>T	c.(337-339)TGC>TGT	p.C113C		NM_024709	NP_078985	Q9H7X2	CA115_HUMAN	hypothetical protein LOC79762	113						integral to membrane					0				GBM - Glioblastoma multiforme(131;0.0273)		TCAAAGGATGCCGCTACGTGG	0.512000													5	156	---	---	---	---	0	0	0.014758	0	0
LYZL2	119180	broad.mit.edu	37	10	30915158	30915158	+	Missense_Mutation	SNP	G	T	T			TCGA-EM-A1CT-01A-11D-A13W-08	TCGA-EM-A1CT-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ae598be-7039-4405-a512-974ad04a6696	77465209-02c9-488e-af29-1e23934a2e6d	g.chr10:30915158G>T	uc001ivk.2	-	3	325	c.312C>A	c.(310-312)AAC>AAA	p.N104K		NM_183058	NP_898881	Q7Z4W2	LYZL2_HUMAN	lysozyme-like 2	58					cell wall macromolecule catabolic process	extracellular region	lysozyme activity				0		Prostate(175;0.151)				GGGCTGTGGTGTTGTAGCCGC	0.552000													4	28	---	---	---	---	1.23904e-05	1.48685e-05	0.014758	1	0
SCN3B	55800	broad.mit.edu	37	11	123513260	123513260	+	Silent	SNP	G	A	A	rs142613556		TCGA-EM-A1CT-01A-11D-A13W-08	TCGA-EM-A1CT-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ae598be-7039-4405-a512-974ad04a6696	77465209-02c9-488e-af29-1e23934a2e6d	g.chr11:123513260G>A	uc001pza.1	-	4	746	c.339C>T	c.(337-339)AAC>AAT	p.N113N	SCN3B_uc001pzb.1_Silent_p.N113N	NM_001040151	NP_001035241	Q9NY72	SCN3B_HUMAN	voltage-gated sodium channel beta-3 subunit	113	Ig-like C2-type.|Extracellular (Potential).				axon guidance	integral to membrane|plasma membrane	voltage-gated sodium channel activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6		Breast(109;0.00204)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.37e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0227)		GGCCAGAGTCGTTCAGAGTGA	0.602000													5	97	---	---	---	---	0	0	0.001168	0	0
VSIG2	23584	broad.mit.edu	37	11	124618648	124618648	+	Missense_Mutation	SNP	C	T	T			TCGA-EM-A1CT-01A-11D-A13W-08	TCGA-EM-A1CT-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ae598be-7039-4405-a512-974ad04a6696	77465209-02c9-488e-af29-1e23934a2e6d	g.chr11:124618648C>T	uc001qas.2	-	5	674	c.598G>A	c.(598-600)GGC>AGC	p.G200S	VSIG2_uc001qat.2_Missense_Mutation_p.G200S	NM_014312	NP_055127	Q96IQ7	VSIG2_HUMAN	V-set and immunoglobulin domain containing 2	200	Extracellular (Potential).|Ig-like C2-type.					integral to plasma membrane|membrane fraction				ovary(3)|central_nervous_system(1)	4	all_hematologic(175;0.215)	Breast(109;0.00663)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0215)		ATGAGCTGGCCAGACACCTCA	0.507000													19	28	---	---	---	---	0	0	0.007413	0	0
SLC4A8	9498	broad.mit.edu	37	12	51855027	51855027	+	Silent	SNP	G	A	A			TCGA-EM-A1CT-01A-11D-A13W-08	TCGA-EM-A1CT-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ae598be-7039-4405-a512-974ad04a6696	77465209-02c9-488e-af29-1e23934a2e6d	g.chr12:51855027G>A	uc001rys.1	+	9	1231	c.1053G>A	c.(1051-1053)CAG>CAA	p.Q351Q	SLC4A8_uc010sni.1_Silent_p.Q298Q|SLC4A8_uc001rym.2_Silent_p.Q298Q|SLC4A8_uc001ryn.2_Silent_p.Q298Q|SLC4A8_uc001ryo.2_Silent_p.Q298Q|SLC4A8_uc001ryp.1_Silent_p.Q298Q|SLC4A8_uc010snj.1_Silent_p.Q378Q|SLC4A8_uc001ryq.3_Silent_p.Q351Q|SLC4A8_uc001ryr.2_Silent_p.Q351Q|SLC4A8_uc010snk.1_Silent_p.Q298Q	NM_001039960	NP_001035049	Q2Y0W8	S4A8_HUMAN	solute carrier family 4, sodium bicarbonate	351	Extracellular (Potential).				bicarbonate transport|sodium ion transport	integral to membrane|plasma membrane	inorganic anion exchanger activity			ovary(3)|pancreas(1)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(357;0.15)		GGAAAGGTCAGCAGTACCATG	0.348000													3	54	---	---	---	---	0	0	0.009096	0	0
CEP290	80184	broad.mit.edu	37	12	88514828	88514828	+	Silent	SNP	C	T	T			TCGA-EM-A1CT-01A-11D-A13W-08	TCGA-EM-A1CT-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ae598be-7039-4405-a512-974ad04a6696	77465209-02c9-488e-af29-1e23934a2e6d	g.chr12:88514828C>T	uc001tar.2	-	14	1649	c.1305G>A	c.(1303-1305)AGG>AGA	p.R435R	CEP290_uc001tat.2_Silent_p.R197R|CEP290_uc009zsl.1_RNA	NM_025114	NP_079390	O15078	CE290_HUMAN	centrosomal protein 290kDa	435	Potential.				cilium assembly|eye photoreceptor cell development|G2/M transition of mitotic cell cycle|hindbrain development|otic vesicle formation|positive regulation of transcription, DNA-dependent|pronephros development|protein transport	cell surface|centrosome|cytosol|nucleus|photoreceptor connecting cilium	protein binding			ovary(5)|breast(1)|pancreas(1)	7						TATCCTTTTCCCTAGCATCAG	0.358000													17	44	---	---	---	---	0	0	0.006122	0	0
MPHOSPH8	54737	broad.mit.edu	37	13	20220952	20220952	+	Nonsense_Mutation	SNP	A	T	T			TCGA-EM-A1CT-01A-11D-A13W-08	TCGA-EM-A1CT-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ae598be-7039-4405-a512-974ad04a6696	77465209-02c9-488e-af29-1e23934a2e6d	g.chr13:20220952A>T	uc001umh.2	+	3	748	c.739A>T	c.(739-741)AAA>TAA	p.K247*	MPHOSPH8_uc001umf.1_Nonsense_Mutation_p.K247*|MPHOSPH8_uc001umg.2_Nonsense_Mutation_p.K247*|MPHOSPH8_uc001umi.2_5'UTR	NM_017520	NP_059990	Q99549	MPP8_HUMAN	M-phase phosphoprotein 8	247	Lys-rich.				cell cycle	cytoplasm|nucleus					0		all_cancers(29;2.83e-16)|all_lung(29;1.16e-17)|all_epithelial(30;8.13e-16)|Lung NSC(5;6.91e-15)|Lung SC(185;0.0367)		all cancers(112;8.43e-05)|Epithelial(112;0.000426)|OV - Ovarian serous cystadenocarcinoma(117;0.00596)|Lung(94;0.015)|LUSC - Lung squamous cell carcinoma(192;0.0795)		agaagatcccaaagaaaatag	0.174000													32	48	---	---	---	---	0	0	0.008361	0	0
NALCN	259232	broad.mit.edu	37	13	101735461	101735461	+	Silent	SNP	C	T	T			TCGA-EM-A1CT-01A-11D-A13W-08	TCGA-EM-A1CT-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ae598be-7039-4405-a512-974ad04a6696	77465209-02c9-488e-af29-1e23934a2e6d	g.chr13:101735461C>T	uc001vox.1	-	32	3861	c.3672G>A	c.(3670-3672)TCG>TCA	p.S1224S		NM_052867	NP_443099	Q8IZF0	NALCN_HUMAN	voltage gated channel like 1	1224	Helical; Name=S1 of repeat IV; (Potential).					integral to membrane	sodium channel activity|voltage-gated ion channel activity			ovary(8)|breast(4)|skin(2)|pancreas(1)|central_nervous_system(1)	16	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					AGAGCAACACCGACTGGGCCA	0.413000													25	42	---	---	---	---	0	0	0.021523	0	0
SERPINA9	327657	broad.mit.edu	37	14	94936076	94936076	+	Silent	SNP	G	A	A			TCGA-EM-A1CT-01A-11D-A13W-08	TCGA-EM-A1CT-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ae598be-7039-4405-a512-974ad04a6696	77465209-02c9-488e-af29-1e23934a2e6d	g.chr14:94936076G>A	uc001ydf.2	-	2	317	c.156C>T	c.(154-156)TCC>TCT	p.S52S	SERPINA9_uc001yde.2_Silent_p.S52S|SERPINA9_uc010avc.2_Intron|SERPINA9_uc001ydg.2_Intron|SERPINA9_uc001ydh.1_Silent_p.S52S|SERPINA9_uc001ydi.1_Intron	NM_175739	NP_783866	Q86WD7	SPA9_HUMAN	serine (or cysteine) proteinase inhibitor, clade	34					regulation of proteolysis	cytoplasm|extracellular region|membrane	serine-type endopeptidase inhibitor activity			lung(1)|central_nervous_system(1)	2		all_cancers(154;0.0691)|all_epithelial(191;0.233)		Epithelial(152;0.144)|COAD - Colon adenocarcinoma(157;0.224)|all cancers(159;0.24)		TCTTTGTGGAGGAAGGGCGGG	0.562000													27	50	---	---	---	---	0	0	0.007291	0	0
C15orf21	283651	broad.mit.edu	37	15	45848224	45848224	+	RNA	SNP	G	T	T			TCGA-EM-A1CT-01A-11D-A13W-08	TCGA-EM-A1CT-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ae598be-7039-4405-a512-974ad04a6696	77465209-02c9-488e-af29-1e23934a2e6d	g.chr15:45848224G>T	uc010beg.1	+	6		c.1219G>T			C15orf21_uc010beh.1_RNA|C15orf21_uc010bei.1_RNA|C15orf21_uc010bej.1_RNA|C15orf21_uc001zvm.1_RNA|C15orf21_uc001zvn.1_RNA					Homo sapiens cDNA FLJ39426 fis, clone PROST2000505.												0		Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;3.03e-17)|GBM - Glioblastoma multiforme(94;7.36e-07)		TGCAGATTTTGTTTAGCTTTT	0.318000			T	ETV1	prostate								8	22	---	---	---	---	0.00829132	0.00941177	0.008291	1	0
CES8	283848	broad.mit.edu	37	16	67040714	67040714	+	Missense_Mutation	SNP	G	A	A			TCGA-EM-A1CT-01A-11D-A13W-08	TCGA-EM-A1CT-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ae598be-7039-4405-a512-974ad04a6696	77465209-02c9-488e-af29-1e23934a2e6d	g.chr16:67040714G>A	uc002eqv.2	+	11	1344	c.1301G>A	c.(1300-1302)CGC>CAC	p.R434H	CES8_uc010vix.1_Intron|CES8_uc002eqw.2_Intron|CES8_uc002eqy.2_Missense_Mutation_p.R406H|CES8_uc002eqx.2_Missense_Mutation_p.R310H|CES8_uc010viy.1_Intron|CES8_uc010viz.1_Missense_Mutation_p.R406H|CES8_uc002eqz.2_Intron	NM_173815	NP_776176	Q5XG92	EST4A_HUMAN	carboxylesterase 8 (putative)	504						extracellular region	carboxylesterase activity				0						AACTTTGCCCGCACAGGGTGA	0.567000													5	89	---	---	---	---	0	0	0.014758	0	0
C2orf78	388960	broad.mit.edu	37	2	74043556	74043556	+	Missense_Mutation	SNP	C	T	T			TCGA-EM-A1CT-01A-11D-A13W-08	TCGA-EM-A1CT-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ae598be-7039-4405-a512-974ad04a6696	77465209-02c9-488e-af29-1e23934a2e6d	g.chr2:74043556C>T	uc002sjr.1	+	3	2327	c.2206C>T	c.(2206-2208)CGG>TGG	p.R736W		NM_001080474	NP_001073943	A6NCI8	CB078_HUMAN	hypothetical protein LOC388960	736										ovary(2)	2						ACATGTTTCTCGGCGGCCAAA	0.537000													8	195	---	---	---	---	0	0	0.004482	0	0
RGPD5	84220	broad.mit.edu	37	2	113127775	113127775	+	Missense_Mutation	SNP	G	C	C			TCGA-EM-A1CT-01A-11D-A13W-08	TCGA-EM-A1CT-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ae598be-7039-4405-a512-974ad04a6696	77465209-02c9-488e-af29-1e23934a2e6d	g.chr2:113127775G>C	uc002ths.1	-	23	5355	c.5278C>G	c.(5278-5280)CCT>GCT	p.P1760A	RGPD8_uc010fkk.1_Missense_Mutation_p.P1620A	NM_005054	NP_005045	Q99666	RGPD5_HUMAN	RANBP2-like and GRIP domain containing 5 isoform	1760					intracellular transport	cytoplasm	binding				0						GAACGGGAAGGATTTTCTTCC	0.308000													4	91	---	---	---	---	0	0	0.014758	0	0
ZBTB46	140685	broad.mit.edu	37	20	62421407	62421407	+	Missense_Mutation	SNP	G	A	A			TCGA-EM-A1CT-01A-11D-A13W-08	TCGA-EM-A1CT-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ae598be-7039-4405-a512-974ad04a6696	77465209-02c9-488e-af29-1e23934a2e6d	g.chr20:62421407G>A	uc002ygv.1	-	2	905	c.704C>T	c.(703-705)CCG>CTG	p.P235L	ZBTB46_uc002ygu.2_RNA	NM_025224	NP_079500	Q86UZ6	ZBT46_HUMAN	zinc finger and BTB domain containing 46	235					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			large_intestine(1)|ovary(1)	2	all_cancers(38;2.09e-12)|all_epithelial(29;3.8e-14)|Lung NSC(23;7.61e-10)|all_lung(23;2.64e-09)					GTACTGAGACGGTGAAACCTG	0.602000													3	43	---	---	---	---	0	0	0.004672	0	0
DNASE1L3	1776	broad.mit.edu	37	3	58196616	58196616	+	Silent	SNP	G	C	C			TCGA-EM-A1CT-01A-11D-A13W-08	TCGA-EM-A1CT-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ae598be-7039-4405-a512-974ad04a6696	77465209-02c9-488e-af29-1e23934a2e6d	g.chr3:58196616G>C	uc003djo.1	-	1	115	c.18C>G	c.(16-18)GCC>GCG	p.A6A	DNASE1L3_uc011bfd.1_Silent_p.A6A|DNASE1L3_uc003djp.1_Silent_p.A6A|DNASE1L3_uc003djq.1_Silent_p.A6A	NM_004944	NP_004935	Q13609	DNSL3_HUMAN	deoxyribonuclease I-like 3 precursor	6					apoptosis|DNA catabolic process	nucleus	calcium ion binding|DNA binding|endodeoxyribonuclease activity, producing 5'-phosphomonoesters			breast(2)|large_intestine(1)	3				BRCA - Breast invasive adenocarcinoma(55;0.00021)|KIRC - Kidney renal clear cell carcinoma(284;0.0445)|Kidney(284;0.0556)|OV - Ovarian serous cystadenocarcinoma(275;0.202)		GCAGCAGTGGGGCCAGCTCCC	0.587000													36	57	---	---	---	---	0	0	0.015359	0	0
CCDC39	339829	broad.mit.edu	37	3	180334307	180334307	+	Silent	SNP	T	C	C			TCGA-EM-A1CT-01A-11D-A13W-08	TCGA-EM-A1CT-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ae598be-7039-4405-a512-974ad04a6696	77465209-02c9-488e-af29-1e23934a2e6d	g.chr3:180334307T>C	uc010hxe.2	-	18	2698	c.2583A>G	c.(2581-2583)CAA>CAG	p.Q861Q	CCDC39_uc003fkn.2_RNA|TTC14_uc003fkm.2_Intron	NM_181426	NP_852091	Q9UFE4	CCD39_HUMAN	coiled-coil domain containing 39	861					axonemal dynein complex assembly|ciliary cell motility|cilium movement involved in determination of left/right asymmetry|flagellar cell motility	cilium axoneme|cytoplasm|cytoskeleton				ovary(4)	4	all_cancers(143;9.31e-15)|Ovarian(172;0.0212)		OV - Ovarian serous cystadenocarcinoma(80;5.62e-23)|GBM - Glioblastoma multiforme(14;0.000558)			GTATTACCTGTTGAAAGTATG	0.264000													24	30	---	---	---	---	0	0	0.021523	0	0
ADCY2	108	broad.mit.edu	37	5	7707861	7707861	+	Silent	SNP	C	T	T	rs112493968	byFrequency	TCGA-EM-A1CT-01A-11D-A13W-08	TCGA-EM-A1CT-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ae598be-7039-4405-a512-974ad04a6696	77465209-02c9-488e-af29-1e23934a2e6d	g.chr5:7707861C>T	uc003jdz.1	+	9	1378	c.1311C>T	c.(1309-1311)GGC>GGT	p.G437G	ADCY2_uc011cmo.1_Silent_p.G257G	NM_020546	NP_065433	Q08462	ADCY2_HUMAN	adenylate cyclase 2	437	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	cytoplasm|dendrite|integral to membrane|plasma membrane	ATP binding|metal ion binding			ovary(5)|pancreas(1)|skin(1)	7						ACTTGAATGGCGCTTATAAAG	0.413000													49	80	---	---	---	---	0	0	0.014410	0	0
HIST1H2BD	3017	broad.mit.edu	37	6	26158671	26158671	+	Missense_Mutation	SNP	T	C	C			TCGA-EM-A1CT-01A-11D-A13W-08	TCGA-EM-A1CT-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ae598be-7039-4405-a512-974ad04a6696	77465209-02c9-488e-af29-1e23934a2e6d	g.chr6:26158671T>C	uc003ngr.2	+	1	323	c.274T>C	c.(274-276)TCC>CCC	p.S92P	HIST1H2BD_uc003ngs.2_Missense_Mutation_p.S92P	NM_021063	NP_066407	P58876	H2B1D_HUMAN	histone cluster 1, H2bd	92					nucleosome assembly	nucleosome|nucleus	DNA binding			ovary(1)|pancreas(1)	2						GACCATCACCTCCAGGGAGAT	0.627000													62	86	---	---	---	---	0	0	0.014410	0	0
PIK3CG	5294	broad.mit.edu	37	7	106509419	106509419	+	Missense_Mutation	SNP	C	A	A			TCGA-EM-A1CT-01A-11D-A13W-08	TCGA-EM-A1CT-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ae598be-7039-4405-a512-974ad04a6696	77465209-02c9-488e-af29-1e23934a2e6d	g.chr7:106509419C>A	uc003vdv.3	+	2	1498	c.1413C>A	c.(1411-1413)CAC>CAA	p.H471Q	PIK3CG_uc003vdu.2_Missense_Mutation_p.H471Q|PIK3CG_uc003vdw.2_Missense_Mutation_p.H471Q	NM_002649	NP_002640	P48736	PK3CG_HUMAN	phosphoinositide-3-kinase, catalytic, gamma	471					G-protein coupled receptor protein signaling pathway|phosphatidylinositol-mediated signaling|platelet activation	phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity|protein binding			lung(16)|central_nervous_system(8)|breast(5)|pancreas(3)|stomach(2)|ovary(2)|upper_aerodigestive_tract(1)|skin(1)	38						TGATAGACCACCGTTTCCTCC	0.532000													46	75	---	---	---	---	1.62263e-30	2.00442e-30	0.014410	1	0
DOCK4	9732	broad.mit.edu	37	7	111484884	111484884	+	Silent	SNP	A	G	G			TCGA-EM-A1CT-01A-11D-A13W-08	TCGA-EM-A1CT-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ae598be-7039-4405-a512-974ad04a6696	77465209-02c9-488e-af29-1e23934a2e6d	g.chr7:111484884A>G	uc003vfx.2	-	25	2940	c.2671T>C	c.(2671-2673)TTG>CTG	p.L891L	DOCK4_uc003vfw.2_Silent_p.L332L|DOCK4_uc003vfy.2_Silent_p.L891L	NM_014705	NP_055520	Q8N1I0	DOCK4_HUMAN	dedicator of cytokinesis 4	891					cell chemotaxis	cytosol|endomembrane system|membrane|stereocilium	GTP binding|guanyl-nucleotide exchange factor activity|PDZ domain binding|Rac GTPase activator activity|Rac GTPase binding|receptor tyrosine kinase binding|SH3 domain binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)	4		Acute lymphoblastic leukemia(1;0.0441)				GTGATCTCCAATATGGTCCTC	0.463000													9	174	---	---	---	---	0	0	0.004482	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-EM-A1CT-01A-11D-A13W-08	TCGA-EM-A1CT-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ae598be-7039-4405-a512-974ad04a6696	77465209-02c9-488e-af29-1e23934a2e6d	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				36	66	---	---	---	---	0	0	0.015359	0	0
TEX15	56154	broad.mit.edu	37	8	30694875	30694875	+	Silent	SNP	C	T	T			TCGA-EM-A1CT-01A-11D-A13W-08	TCGA-EM-A1CT-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ae598be-7039-4405-a512-974ad04a6696	77465209-02c9-488e-af29-1e23934a2e6d	g.chr8:30694875C>T	uc003xil.2	-	3	7776	c.7776G>A	c.(7774-7776)GTG>GTA	p.V2592V		NM_031271	NP_112561	Q9BXT5	TEX15_HUMAN	testis expressed 15	2592										ovary(3)|upper_aerodigestive_tract(2)|skin(2)	7				KIRC - Kidney renal clear cell carcinoma(542;0.0918)|Kidney(114;0.111)		CAAAAGTATGCACAGTATTGG	0.378000													61	100	---	---	---	---	0	0	0.014410	0	0
ZFAND1	79752	broad.mit.edu	37	8	82614952	82614952	+	Missense_Mutation	SNP	T	A	A			TCGA-EM-A1CT-01A-11D-A13W-08	TCGA-EM-A1CT-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ae598be-7039-4405-a512-974ad04a6696	77465209-02c9-488e-af29-1e23934a2e6d	g.chr8:82614952T>A	uc003ycj.1	-	8	799	c.785A>T	c.(784-786)AAT>ATT	p.N262I	ZFAND1_uc010lzx.1_Missense_Mutation_p.N255I|ZFAND1_uc003yck.1_Missense_Mutation_p.N155I	NM_024699	NP_078975	Q8TCF1	ZFAN1_HUMAN	zinc finger, AN1-type domain 1	262							zinc ion binding			ovary(1)	1						AGATTCAACATTTTTACAGAA	0.294000													48	73	---	---	---	---	0	0	0.013114	0	0
EPPK1	83481	broad.mit.edu	37	8	144940654	144940654	+	Silent	SNP	G	A	A			TCGA-EM-A1CT-01A-11D-A13W-08	TCGA-EM-A1CT-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ae598be-7039-4405-a512-974ad04a6696	77465209-02c9-488e-af29-1e23934a2e6d	g.chr8:144940654G>A	uc003zaa.1	-	2	14791	c.14778C>T	c.(14776-14778)CCC>CCT	p.P4926P		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	4926	Plectin 61.					cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			GGGCCGTGCCGGGCCGCAGCA	0.726000													3	39	---	---	---	---	0	0	0.001168	0	0
TNC	3371	broad.mit.edu	37	9	117783441	117783441	+	Missense_Mutation	SNP	C	T	T			TCGA-EM-A1CT-01A-11D-A13W-08	TCGA-EM-A1CT-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ae598be-7039-4405-a512-974ad04a6696	77465209-02c9-488e-af29-1e23934a2e6d	g.chr9:117783441C>T	uc004bjj.3	-	28	6963	c.6601G>A	c.(6601-6603)GCA>ACA	p.A2201T	TNC_uc010mvf.2_Missense_Mutation_p.A1928T	NM_002160	NP_002151	P24821	TENA_HUMAN	tenascin C precursor	2201					cell adhesion|response to wounding|signal transduction	extracellular space	receptor binding|syndecan binding			central_nervous_system(4)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	7						GGAATTTATGCCCGTTTGCGC	0.502000													3	40	---	---	---	---	0	0	0.004672	0	0
Unknown	0	broad.mit.edu	37	MT	11718	11718	+	RNA	SNP	G	A	A			TCGA-EM-A1CT-01A-11D-A13W-08	TCGA-EM-A1CT-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ae598be-7039-4405-a512-974ad04a6696	77465209-02c9-488e-af29-1e23934a2e6d	g.chrM:11718G>A	uc004cov.3	+	1		c.1141G>A			uc004cow.1_5'Flank|uc004cox.3_5'Flank					Homo sapiens potential LAG1 interactor mRNA, partial cds.																		AATCGCCCACGGACTCACATC	0.483000													195	3	---	---	---	---	0	0	0.014410	0	0
Unknown	0	broad.mit.edu	37	MT	13093	13093	+	RNA	SNP	G	A	A			TCGA-EM-A1CT-01A-11D-A13W-08	TCGA-EM-A1CT-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ae598be-7039-4405-a512-974ad04a6696	77465209-02c9-488e-af29-1e23934a2e6d	g.chrM:13093G>A	uc004cox.3	+	1		c.757G>A			uc004coy.2_5'Flank|uc004coz.1_5'Flank					Homo sapiens NADH dehydrogenase subunit 5 (MTND5) mRNA, RNA 5, complete cds; mitochondrial gene for mitochondrial product.																		CAAGCACTATAGTTGTAGCAG	0.522000													105	127	---	---	---	---	0	0	0.014410	0	0
TBC1D25	4943	broad.mit.edu	37	X	48403341	48403341	+	Silent	SNP	C	A	A			TCGA-EM-A1CT-01A-11D-A13W-08	TCGA-EM-A1CT-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ae598be-7039-4405-a512-974ad04a6696	77465209-02c9-488e-af29-1e23934a2e6d	g.chrX:48403341C>A	uc004dka.1	+	3	429	c.318C>A	c.(316-318)CTC>CTA	p.L106L	TBC1D25_uc011mly.1_Silent_p.L48L|TBC1D25_uc004dkb.1_Intron|TBC1D25_uc011mlz.1_Intron|TBC1D25_uc011mma.1_5'UTR|TBC1D25_uc004dkc.1_Intron|TBC1D25_uc011mmb.1_Silent_p.L110L|TBC1D25_uc011mmc.1_Intron|TBC1D25_uc011mmd.1_5'UTR	NM_002536	NP_002527	Q3MII6	TBC25_HUMAN	TBC1 domain family, member 25	106						intracellular	Rab GTPase activator activity			ovary(1)	1						ACTGGGACCTCAGCACAGCCT	0.562000													3	34	---	---	---	---	0.004672	0.00545067	0.004672	1	0
Unknown	0	broad.mit.edu	37	1	2629238	2629238	+	IGR	DEL	C	-	-			TCGA-EM-A1CT-01A-11D-A13W-08	TCGA-EM-A1CT-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ae598be-7039-4405-a512-974ad04a6696	77465209-02c9-488e-af29-1e23934a2e6d	g.chr1:2629238delC								MMEL1 (64757 upstream) : ACTRT2 (308808 downstream)																							TGGAACAGCACCCTGCACCCC	0.627													5	11	---	---	---	---					
Unknown	0	broad.mit.edu	37	1	82617156	82617163	+	IGR	DEL	AAGAAAGA	-	-	rs36191171	by1000genomes	TCGA-EM-A1CT-01A-11D-A13W-08	TCGA-EM-A1CT-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ae598be-7039-4405-a512-974ad04a6696	77465209-02c9-488e-af29-1e23934a2e6d	g.chr1:82617156_82617163delAAGAAAGA								LPHN2 (159050 upstream) : None (None downstream)																							ggaaggaaggaagaaagaaagaaagaaa	0.000													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	1	156325583	156325583	+	IGR	DEL	T	-	-			TCGA-EM-A1CT-01A-11D-A13W-08	TCGA-EM-A1CT-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ae598be-7039-4405-a512-974ad04a6696	77465209-02c9-488e-af29-1e23934a2e6d	g.chr1:156325583delT								C1orf182 (8800 upstream) : RHBG (13420 downstream)																							CACCCCCGCCTTTTTTTTTTT	0.119													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	19414220	19414223	+	IGR	DEL	TTCC	-	-	rs10763870	by1000genomes	TCGA-EM-A1CT-01A-11D-A13W-08	TCGA-EM-A1CT-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ae598be-7039-4405-a512-974ad04a6696	77465209-02c9-488e-af29-1e23934a2e6d	g.chr10:19414220_19414223delTTCC								ARL5B (447280 upstream) : PLXDC2 (691149 downstream)																							ctttctttctttccttccttcctt	0.039													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	50760716	50760717	+	IGR	INS	-	T	T	rs111281037		TCGA-EM-A1CT-01A-11D-A13W-08	TCGA-EM-A1CT-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ae598be-7039-4405-a512-974ad04a6696	77465209-02c9-488e-af29-1e23934a2e6d	g.chr10:50760716_50760717insT								PGBD3 (13132 upstream) : CHAT (56424 downstream)																							TTCTAGTCCAGTTTTTTTTTTC	0.188													2	4	---	---	---	---					
ATM	472	broad.mit.edu	37	11	108178672	108178672	+	Frame_Shift_Del	DEL	C	-	-			TCGA-EM-A1CT-01A-11D-A13W-08	TCGA-EM-A1CT-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ae598be-7039-4405-a512-974ad04a6696	77465209-02c9-488e-af29-1e23934a2e6d	g.chr11:108178672delC	uc001pkb.1	+	38	6108	c.5723delC	c.(5722-5724)ACAfs	p.T1908fs	ATM_uc009yxr.1_Frame_Shift_Del_p.T1908fs|ATM_uc001pke.1_Frame_Shift_Del_p.T560fs|ATM_uc001pkg.1_Frame_Shift_Del_p.T265fs|ATM_uc009yxt.1_Intron	NM_000051	NP_000042	Q13315	ATM_HUMAN	ataxia telangiectasia mutated isoform 1	1908					cell cycle arrest|cellular response to gamma radiation|DNA damage induced protein phosphorylation|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|double-strand break repair via homologous recombination|G2/M transition DNA damage checkpoint|histone mRNA catabolic process|mitotic cell cycle spindle assembly checkpoint|negative regulation of B cell proliferation|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|pre-B cell allelic exclusion|protein autophosphorylation|reciprocal meiotic recombination|replicative senescence	cytoplasmic membrane-bounded vesicle|nucleoplasm	1-phosphatidylinositol-3-kinase activity|ATP binding|DNA binding|DNA-dependent protein kinase activity|identical protein binding|protein complex binding|protein dimerization activity|protein N-terminus binding			haematopoietic_and_lymphoid_tissue(174)|lung(25)|breast(15)|large_intestine(9)|ovary(5)|kidney(5)|central_nervous_system(4)|upper_aerodigestive_tract(1)|stomach(1)|NS(1)	240		all_cancers(61;9.64e-12)|all_epithelial(67;9.97e-08)|Melanoma(852;2.55e-06)|Acute lymphoblastic leukemia(157;3.95e-05)|all_hematologic(158;0.00014)|Breast(348;0.0258)|all_neural(303;0.072)		Epithelial(105;9.05e-06)|BRCA - Breast invasive adenocarcinoma(274;1.06e-05)|all cancers(92;0.000208)|Colorectal(284;0.116)|OV - Ovarian serous cystadenocarcinoma(223;0.147)		TCACAAAGAACAATGCTTGCT	0.398			D|Mis|N|F|S		T-PLL	leukemia|lymphoma|medulloblastoma|glioma		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Ataxia_Telangiectasia	TSP Lung(14;0.12)			23	43	---	---	---	---					
Unknown	0	broad.mit.edu	37	12	31022844	31022851	+	IGR	DEL	GAAGGAAG	-	-			TCGA-EM-A1CT-01A-11D-A13W-08	TCGA-EM-A1CT-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ae598be-7039-4405-a512-974ad04a6696	77465209-02c9-488e-af29-1e23934a2e6d	g.chr12:31022844_31022851delGAAGGAAG								CAPRIN2 (115396 upstream) : TSPAN11 (56511 downstream)																							gagagagaaagaaggaaggaaggaagga	0.115													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	33950580	33950580	+	IGR	DEL	T	-	-	rs113305341		TCGA-EM-A1CT-01A-11D-A13W-08	TCGA-EM-A1CT-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ae598be-7039-4405-a512-974ad04a6696	77465209-02c9-488e-af29-1e23934a2e6d	g.chr16:33950580delT								None (None upstream) : MIR1826 (14928 downstream)																							TAATTTACCCTTTTCACAGTA	0.303													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	90204189	90204190	+	RNA	INS	-	T	T			TCGA-EM-A1CT-01A-11D-A13W-08	TCGA-EM-A1CT-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ae598be-7039-4405-a512-974ad04a6696	77465209-02c9-488e-af29-1e23934a2e6d	g.chr16:90204189_90204190insT	uc002fqr.2	+	9		c.1571_1572insT								Homo sapiens cDNA FLJ35239 fis, clone PROST2002212.																		TCCCAAAGGAAttttttttttt	0.213													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	71004413	71004414	+	IGR	INS	-	AA	AA	rs55926232		TCGA-EM-A1CT-01A-11D-A13W-08	TCGA-EM-A1CT-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ae598be-7039-4405-a512-974ad04a6696	77465209-02c9-488e-af29-1e23934a2e6d	g.chr2:71004413_71004414insAA								ADD2 (9084 upstream) : FIGLA (28 downstream)																							aactctatctcaaaaaaaaaaa	0.163													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	241579658	241579659	+	IGR	INS	-	TCCC	TCCC	rs36163657		TCGA-EM-A1CT-01A-11D-A13W-08	TCGA-EM-A1CT-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ae598be-7039-4405-a512-974ad04a6696	77465209-02c9-488e-af29-1e23934a2e6d	g.chr2:241579658_241579659insTCCC								GPR35 (8983 upstream) : AQP12B (36177 downstream)																							ccttccttccttccttccctcc	0.000													4	7	---	---	---	---					
ZCCHC3	85364	broad.mit.edu	37	20	278688	278690	+	In_Frame_Del	DEL	CGG	-	-	rs5839847		TCGA-EM-A1CT-01A-11D-A13W-08	TCGA-EM-A1CT-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ae598be-7039-4405-a512-974ad04a6696	77465209-02c9-488e-af29-1e23934a2e6d	g.chr20:278688_278690delCGG	uc002wdf.2	+	1	485_487	c.461_463delCGG	c.(460-465)CCGGCG>CCG	p.A158del	ZCCHC3_uc002wdg.2_Intron	NM_033089	NP_149080	Q9NUD5	ZCHC3_HUMAN	zinc finger, CCHC domain containing 3	158	Poly-Ala.						nucleic acid binding|zinc ion binding				0		all_cancers(10;0.000209)|Lung NSC(37;0.0417)|all_lung(30;0.0713)|all_epithelial(17;0.0748)|Breast(17;0.231)	OV - Ovarian serous cystadenocarcinoma(29;0.149)			CAGGATGAgccggcggcggcggc	0.635													4	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	21	9590549	9590550	+	IGR	INS	-	A	A			TCGA-EM-A1CT-01A-11D-A13W-08	TCGA-EM-A1CT-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ae598be-7039-4405-a512-974ad04a6696	77465209-02c9-488e-af29-1e23934a2e6d	g.chr21:9590549_9590550insA								None (None upstream) : None (None downstream)																							CCCTCaaatttaaaaaattata	0.322													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	49652780	49652781	+	IGR	INS	-	C	C			TCGA-EM-A1CT-01A-11D-A13W-08	TCGA-EM-A1CT-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ae598be-7039-4405-a512-974ad04a6696	77465209-02c9-488e-af29-1e23934a2e6d	g.chr4:49652780_49652781insC								CWH43 (588687 upstream) : None (None downstream)																							gaatggaatggatcaacccgag	0.000													2	4	---	---	---	---					
CNPY4	245812	broad.mit.edu	37	7	99722478	99722481	+	Frame_Shift_Del	DEL	AAGC	-	-			TCGA-EM-A1CT-01A-11D-A13W-08	TCGA-EM-A1CT-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ae598be-7039-4405-a512-974ad04a6696	77465209-02c9-488e-af29-1e23934a2e6d	g.chr7:99722478_99722481delAAGC	uc003uto.2	+	6	817_820	c.714_717delAAGC	c.(712-717)GGAAGCfs	p.G238fs	MBLAC1_uc003utp.2_5'Flank	NM_152755	NP_689968	Q8N129	CNPY4_HUMAN	canopy 4 homolog precursor	238_239						extracellular region					0	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					CCAAGACAGGAAGCCACCCCAAAC	0.397													8	140	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	93931734	93931735	+	IGR	INS	-	AAAA	AAAA	rs35862295		TCGA-EM-A1CT-01A-11D-A13W-08	TCGA-EM-A1CT-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ae598be-7039-4405-a512-974ad04a6696	77465209-02c9-488e-af29-1e23934a2e6d	g.chr9:93931734_93931735insAAAA								SYK (270901 upstream) : AUH (44364 downstream)																							gactccatctcaaaaaaaaaaa	0.208													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	98910245	98910246	+	IGR	INS	-	A	A	rs139074595		TCGA-EM-A1CT-01A-11D-A13W-08	TCGA-EM-A1CT-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ae598be-7039-4405-a512-974ad04a6696	77465209-02c9-488e-af29-1e23934a2e6d	g.chr9:98910245_98910246insA								NCRNA00092 (126208 upstream) : HSD17B3 (87343 downstream)																							ACCATCTCCTGAAAAAAAAAAA	0.312													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	Y	58978083	58978087	+	IGR	DEL	TCCAT	-	-			TCGA-EM-A1CT-01A-11D-A13W-08	TCGA-EM-A1CT-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	6ae598be-7039-4405-a512-974ad04a6696	77465209-02c9-488e-af29-1e23934a2e6d	g.chrY:58978083_58978087delTCCAT								None (None upstream) : None (None downstream)																							tccactccactccattcctctacat	0.000													3	6	---	---	---	---					
