Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
KRTAP5-3	387266	broad.mit.edu	37	11	1629152	1629152	+	Missense_Mutation	SNP	C	G	G			TCGA-EM-A3FQ-01A-11D-A21A-08	TCGA-EM-A3FQ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	79133e29-ba0b-4e2f-a6d9-bf294c5144f0	2125f0b1-c6b9-4b65-a6db-9fd4422e7c7e	g.chr11:1629152C>G	uc001ltw.1	-	1	542	c.464G>C	c.(463-465)TGC>TCC	p.C155S		NM_001012708	NP_001012726	Q6L8H2	KRA53_HUMAN	keratin associated protein 5-3	155	11 X 4 AA repeats of C-C-X-P.					keratin filament				ovary(2)	2		all_epithelial(84;0.00018)|Ovarian(85;0.0014)|Breast(177;0.00147)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.000618)|Lung(200;0.0684)|LUSC - Lung squamous cell carcinoma(625;0.0822)		GGACTGGGAGCAGCTGGGCTT	0.388000													6	467	---	---	---	---	0	0	0.001168	0	0
TMEM132B	114795	broad.mit.edu	37	12	126138656	126138656	+	Silent	SNP	G	A	A			TCGA-EM-A3FQ-01A-11D-A21A-08	TCGA-EM-A3FQ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	79133e29-ba0b-4e2f-a6d9-bf294c5144f0	2125f0b1-c6b9-4b65-a6db-9fd4422e7c7e	g.chr12:126138656G>A	uc001uhe.1	+	9	2645	c.2637G>A	c.(2635-2637)CCG>CCA	p.P879P	TMEM132B_uc001uhf.1_Silent_p.P391P	NM_052907	NP_443139	Q14DG7	T132B_HUMAN	transmembrane protein 132B	879	Extracellular (Potential).					integral to membrane				skin(11)|ovary(5)|large_intestine(1)|pancreas(1)|breast(1)	19	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000423)|Epithelial(86;0.00394)|all cancers(50;0.0362)		GGAAGTCACCGGACCCCAATA	0.517000													17	38	---	---	---	---	0	0	0.006122	0	0
MCF2L	23263	broad.mit.edu	37	13	113728878	113728878	+	Splice_Site	SNP	G	A	A			TCGA-EM-A3FQ-01A-11D-A21A-08	TCGA-EM-A3FQ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	79133e29-ba0b-4e2f-a6d9-bf294c5144f0	2125f0b1-c6b9-4b65-a6db-9fd4422e7c7e	g.chr13:113728878G>A	uc001vsu.2	+	10	1309	c.1287_splice	c.e10+1	p.G429_splice	MCF2L_uc001vsq.2_Splice_Site_p.G429_splice|MCF2L_uc010tjr.1_Splice_Site_p.G372_splice|MCF2L_uc001vsr.2_Splice_Site_p.G376_splice|MCF2L_uc001vss.3_Splice_Site_p.G370_splice|MCF2L_uc010tjs.1_Splice_Site_p.G370_splice|MCF2L_uc001vst.1_Splice_Site_p.G334_splice	NM_001112732	NP_001106203	O15068	MCF2L_HUMAN	MCF.2 cell line derived transforming						apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|plasma membrane	Rho guanyl-nucleotide exchange factor activity			ovary(1)|kidney(1)	2	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)	all_cancers(25;0.118)|all_lung(25;0.0368)|all_epithelial(44;0.0396)|Lung NSC(25;0.129)|Breast(118;0.188)				GAAATCAGGCGTAAGGCGGGG	0.642000													4	108	---	---	---	---	0	0	0.009096	0	0
FSCB	84075	broad.mit.edu	37	14	44974999	44974999	+	Missense_Mutation	SNP	G	A	A			TCGA-EM-A3FQ-01A-11D-A21A-08	TCGA-EM-A3FQ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	79133e29-ba0b-4e2f-a6d9-bf294c5144f0	2125f0b1-c6b9-4b65-a6db-9fd4422e7c7e	g.chr14:44974999G>A	uc001wvn.2	-	1	1501	c.1192C>T	c.(1192-1194)CCT>TCT	p.P398S		NM_032135	NP_115511	Q5H9T9	FSCB_HUMAN	fibrous sheath CABYR binding protein	398	Pro-rich.					cilium				lung(3)|breast(3)|ovary(2)|central_nervous_system(1)	9				GBM - Glioblastoma multiforme(112;0.128)		GCTGGTAAAGGCTGTACTTCA	0.507000													9	75	---	---	---	---	0	0	0.004482	0	0
SLC7A5P2	387254	broad.mit.edu	37	16	21531111	21531111	+	Silent	SNP	T	C	C	rs7197243	by1000genomes	TCGA-EM-A3FQ-01A-11D-A21A-08	TCGA-EM-A3FQ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	79133e29-ba0b-4e2f-a6d9-bf294c5144f0	2125f0b1-c6b9-4b65-a6db-9fd4422e7c7e	g.chr16:21531111T>C	uc002djd.2	-	1	655	c.576A>G	c.(574-576)GTA>GTG	p.V192V	uc002diq.3_Intron|LOC100271836_uc002dja.2_Intron|LOC100271836_uc002djb.2_Intron	NR_002594				RecName: Full=Putative L-type amino acid transporter 1-like protein MLAS; AltName: Full=hLAT1 3-transmembrane protein MLAS;          Short=hLAT1 3TM MLAS;												0						ACCCAGGGACTACGACCTCCC	0.652000													3	7	---	---	---	---	0	0	0.009096	0	0
SALL1	6299	broad.mit.edu	37	16	51173859	51173859	+	Silent	SNP	A	G	G			TCGA-EM-A3FQ-01A-11D-A21A-08	TCGA-EM-A3FQ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	79133e29-ba0b-4e2f-a6d9-bf294c5144f0	2125f0b1-c6b9-4b65-a6db-9fd4422e7c7e	g.chr16:51173859A>G	uc010vgs.1	-	2	2305	c.2274T>C	c.(2272-2274)GCT>GCC	p.A758A	SALL1_uc010vgr.1_Silent_p.A661A|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	758					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			GCGGGGGCATAGCACGATGGA	0.552000													3	93	---	---	---	---	0	0	0.009096	0	0
WFIKKN2	124857	broad.mit.edu	37	17	48917136	48917136	+	Missense_Mutation	SNP	G	T	T			TCGA-EM-A3FQ-01A-11D-A21A-08	TCGA-EM-A3FQ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	79133e29-ba0b-4e2f-a6d9-bf294c5144f0	2125f0b1-c6b9-4b65-a6db-9fd4422e7c7e	g.chr17:48917136G>T	uc002isv.3	+	2	1181	c.487G>T	c.(487-489)GCC>TCC	p.A163S	WFIKKN2_uc010dbu.2_Missense_Mutation_p.A70S	NM_175575	NP_783165	Q8TEU8	WFKN2_HUMAN	WFIKKN2 protein	163	Kazal-like.					extracellular region	metalloendopeptidase inhibitor activity|protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|skin(1)	3			BRCA - Breast invasive adenocarcinoma(22;1.09e-08)			GGATGCCGAGGCCTGCTCCAA	0.607000													5	68	---	---	---	---	5.18039e-06	6.37587e-06	0.003080	1	0
POTEE	445582	broad.mit.edu	37	2	131976198	131976198	+	Missense_Mutation	SNP	A	G	G			TCGA-EM-A3FQ-01A-11D-A21A-08	TCGA-EM-A3FQ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	79133e29-ba0b-4e2f-a6d9-bf294c5144f0	2125f0b1-c6b9-4b65-a6db-9fd4422e7c7e	g.chr2:131976198A>G	uc002tsn.2	+	1	275	c.223A>G	c.(223-225)AGT>GGT	p.S75G	PLEKHB2_uc002tsh.2_Intron|POTEE_uc002tsk.2_5'UTR|POTEE_uc002tsl.2_5'UTR	NM_001083538	NP_001077007	Q6S8J3	POTEE_HUMAN	protein expressed in prostate, ovary, testis,	75							ATP binding				0						CTGCAGGGGGAGTGGCAAGAG	0.587000													4	223	---	---	---	---	0	0	0.000602	0	0
TANC1	85461	broad.mit.edu	37	2	160080795	160080795	+	Missense_Mutation	SNP	G	A	A			TCGA-EM-A3FQ-01A-11D-A21A-08	TCGA-EM-A3FQ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	79133e29-ba0b-4e2f-a6d9-bf294c5144f0	2125f0b1-c6b9-4b65-a6db-9fd4422e7c7e	g.chr2:160080795G>A	uc002uag.2	+	23	4005	c.3731G>A	c.(3730-3732)GGG>GAG	p.G1244E	TANC1_uc010zcm.1_Missense_Mutation_p.G1236E|TANC1_uc010fom.1_Missense_Mutation_p.G1050E|TANC1_uc010fon.2_Missense_Mutation_p.G88E	NM_033394	NP_203752	Q9C0D5	TANC1_HUMAN	tetratricopeptide repeat, ankyrin repeat and	1244	ANK 11.					cell junction|postsynaptic density|postsynaptic membrane	binding			ovary(2)|central_nervous_system(1)	3						GACCACAGCGGGATGCGGCCC	0.592000													3	101	---	---	---	---	0	0	0.004672	0	0
Unknown	0	broad.mit.edu	37	21	9769119	9769119	+	RNA	SNP	G	A	A			TCGA-EM-A3FQ-01A-11D-A21A-08	TCGA-EM-A3FQ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	79133e29-ba0b-4e2f-a6d9-bf294c5144f0	2125f0b1-c6b9-4b65-a6db-9fd4422e7c7e	g.chr21:9769119G>A	uc011abu.1	+	10		c.1094G>A								Homo sapiens, clone IMAGE:4720764, mRNA.																		GCTCAATTCCGATCTGTTGAA	0.373000													4	15	---	---	---	---	0	0	0.009096	0	0
Unknown	0	broad.mit.edu	37	21	9769121	9769121	+	RNA	SNP	T	A	A			TCGA-EM-A3FQ-01A-11D-A21A-08	TCGA-EM-A3FQ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	79133e29-ba0b-4e2f-a6d9-bf294c5144f0	2125f0b1-c6b9-4b65-a6db-9fd4422e7c7e	g.chr21:9769121T>A	uc011abu.1	+	10		c.1096T>A								Homo sapiens, clone IMAGE:4720764, mRNA.																		TCAATTCCGATCTGTTGAAGG	0.373000													5	14	---	---	---	---	0	0	0.000602	0	0
ADAMTS2	9509	broad.mit.edu	37	5	178553069	178553069	+	Missense_Mutation	SNP	A	T	T			TCGA-EM-A3FQ-01A-11D-A21A-08	TCGA-EM-A3FQ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	79133e29-ba0b-4e2f-a6d9-bf294c5144f0	2125f0b1-c6b9-4b65-a6db-9fd4422e7c7e	g.chr5:178553069A>T	uc003mjw.2	-	18	2680	c.2680T>A	c.(2680-2682)TTC>ATC	p.F894I		NM_014244	NP_055059	O95450	ATS2_HUMAN	ADAM metallopeptidase with thrombospondin type 1	894	TSP type-1 2.				collagen catabolic process	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4	all_cancers(89;0.000456)|all_epithelial(37;0.000138)|Renal(175;0.000159)|Lung NSC(126;0.00184)|all_lung(126;0.00326)	all_cancers(40;0.00604)|all_neural(177;0.00411)|Medulloblastoma(196;0.00508)|Lung NSC(249;0.0569)|all_lung(500;0.129)|all_hematologic(541;0.211)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	GBM - Glioblastoma multiforme(465;0.0473)		GCGGCACAGAAGCCACGGTGT	0.652000													6	217	---	---	---	---	0	0	0.003080	0	0
RUNX2	860	broad.mit.edu	37	6	45390469	45390469	+	Silent	SNP	G	A	A			TCGA-EM-A3FQ-01A-11D-A21A-08	TCGA-EM-A3FQ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	79133e29-ba0b-4e2f-a6d9-bf294c5144f0	2125f0b1-c6b9-4b65-a6db-9fd4422e7c7e	g.chr6:45390469G>A	uc011dvx.1	+	3	408	c.198G>A	c.(196-198)CAG>CAA	p.Q66Q	RUNX2_uc011dvy.1_Silent_p.Q66Q|RUNX2_uc003oxt.2_Silent_p.Q52Q	NM_001024630	NP_001019801	Q13950	RUNX2_HUMAN	runt-related transcription factor 2 isoform a	66	Poly-Gln.				negative regulation of transcription, DNA-dependent|osteoblast differentiation|positive regulation of transcription, DNA-dependent	nucleus	ATP binding|DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)|skin(1)	3						agcagcaacagcagcagcagc	0.274000													3	23	---	---	---	---	0	0	0.009096	0	0
NT5E	4907	broad.mit.edu	37	6	86195042	86195042	+	Missense_Mutation	SNP	T	C	C			TCGA-EM-A3FQ-01A-11D-A21A-08	TCGA-EM-A3FQ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	79133e29-ba0b-4e2f-a6d9-bf294c5144f0	2125f0b1-c6b9-4b65-a6db-9fd4422e7c7e	g.chr6:86195042T>C	uc003pko.3	+	4	1397	c.841T>C	c.(841-843)TAT>CAT	p.Y281H	NT5E_uc010kbr.2_Missense_Mutation_p.Y281H	NM_002526	NP_002517	P21589	5NTD_HUMAN	5' nucleotidase, ecto precursor	281					DNA metabolic process|purine base metabolic process|pyrimidine base metabolic process|pyrimidine nucleoside catabolic process	anchored to membrane|cytoplasm|membrane fraction|plasma membrane	5'-nucleotidase activity|nucleotide binding			ovary(3)|central_nervous_system(1)	4		all_cancers(76;0.000215)|Acute lymphoblastic leukemia(125;3.66e-08)|all_hematologic(105;8.61e-05)|all_epithelial(107;0.0427)		BRCA - Breast invasive adenocarcinoma(108;0.0417)	Pentoxifylline(DB00806)	AGTCCAGGCCTATGCTTTTGG	0.453000													3	83	---	---	---	---	0	0	0.009096	0	0
NPTX2	4885	broad.mit.edu	37	7	98254301	98254301	+	Nonsense_Mutation	SNP	C	G	G			TCGA-EM-A3FQ-01A-11D-A21A-08	TCGA-EM-A3FQ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	79133e29-ba0b-4e2f-a6d9-bf294c5144f0	2125f0b1-c6b9-4b65-a6db-9fd4422e7c7e	g.chr7:98254301C>G	uc003upl.2	+	3	888	c.711C>G	c.(709-711)TAC>TAG	p.Y237*		NM_002523	NP_002514	P47972	NPTX2_HUMAN	neuronal pentraxin II precursor	237	Pentaxin.				synaptic transmission	extracellular region	metal ion binding|sugar binding			central_nervous_system(2)|skin(1)	3	all_cancers(62;2.28e-09)|all_epithelial(64;4.86e-10)|Esophageal squamous(72;0.00918)|Lung NSC(181;0.0128)|all_lung(186;0.0142)		STAD - Stomach adenocarcinoma(171;0.215)			ACTACCTATACGGCAAGATCA	0.587000													4	286	---	---	---	---	0	0	0.000602	0	0
PCDH11X	27328	broad.mit.edu	37	X	91133712	91133712	+	Missense_Mutation	SNP	G	A	A			TCGA-EM-A3FQ-01A-11D-A21A-08	TCGA-EM-A3FQ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	79133e29-ba0b-4e2f-a6d9-bf294c5144f0	2125f0b1-c6b9-4b65-a6db-9fd4422e7c7e	g.chrX:91133712G>A	uc004efk.1	+	2	3318	c.2473G>A	c.(2473-2475)GTT>ATT	p.V825I	PCDH11X_uc004efl.1_Missense_Mutation_p.V825I|PCDH11X_uc004efo.1_Missense_Mutation_p.V825I|PCDH11X_uc010nmv.1_Missense_Mutation_p.V825I|PCDH11X_uc004efm.1_Missense_Mutation_p.V825I|PCDH11X_uc004efn.1_Missense_Mutation_p.V825I|PCDH11X_uc004efh.1_Missense_Mutation_p.V825I|PCDH11X_uc004efj.1_Missense_Mutation_p.V825I	NM_032968	NP_116750	Q9BZA7	PC11X_HUMAN	protocadherin 11 X-linked isoform c	825	Helical; (Potential).				homophilic cell adhesion	integral to plasma membrane	calcium ion binding			large_intestine(2)	2						CATAACTGTCGTTGTAGTTAT	0.463000													29	67	---	---	---	---	0	0	0.007835	0	0
BARHL2	343472	broad.mit.edu	37	1	91183389	91183391	+	5'Flank	DEL	GAG	-	-			TCGA-EM-A3FQ-01A-11D-A21A-08	TCGA-EM-A3FQ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	79133e29-ba0b-4e2f-a6d9-bf294c5144f0	2125f0b1-c6b9-4b65-a6db-9fd4422e7c7e	g.chr1:91183389_91183391delGAG	uc001dns.2	-							NM_020063	NP_064447	Q9NY43	BARH2_HUMAN	BarH-like homeobox 2							nucleus	sequence-specific DNA binding			ovary(1)	1		all_lung(203;0.0263)|Lung SC(238;0.128)		all cancers(265;0.000897)|Epithelial(280;0.00516)|OV - Ovarian serous cystadenocarcinoma(397;0.211)		GCGGCAACCCgaggaggaggagg	0.488													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	11	14298169	14298170	+	IGR	INS	-	G	G	rs138575659		TCGA-EM-A3FQ-01A-11D-A21A-08	TCGA-EM-A3FQ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	79133e29-ba0b-4e2f-a6d9-bf294c5144f0	2125f0b1-c6b9-4b65-a6db-9fd4422e7c7e	g.chr11:14298169_14298170insG								SPON1 (8523 upstream) : RRAS2 (1297 downstream)																							gaagaggaagagggaggggaag	0.084													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	11	76763601	76763601	+	IGR	DEL	G	-	-			TCGA-EM-A3FQ-01A-11D-A21A-08	TCGA-EM-A3FQ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	79133e29-ba0b-4e2f-a6d9-bf294c5144f0	2125f0b1-c6b9-4b65-a6db-9fd4422e7c7e	g.chr11:76763601delG								B3GNT6 (10598 upstream) : CAPN5 (14391 downstream)																							agtgaggaatgggggggcggg	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	12	131716462	131716464	+	IGR	DEL	CCT	-	-			TCGA-EM-A3FQ-01A-11D-A21A-08	TCGA-EM-A3FQ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	79133e29-ba0b-4e2f-a6d9-bf294c5144f0	2125f0b1-c6b9-4b65-a6db-9fd4422e7c7e	g.chr12:131716462_131716464delCCT								LOC116437 (18987 upstream) : SFRS8 (479171 downstream)																							ctcctcctcccctcctcctcctc	0.108													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	12	132619335	132619336	+	IGR	INS	-	C	C			TCGA-EM-A3FQ-01A-11D-A21A-08	TCGA-EM-A3FQ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	79133e29-ba0b-4e2f-a6d9-bf294c5144f0	2125f0b1-c6b9-4b65-a6db-9fd4422e7c7e	g.chr12:132619335_132619336insC								EP400NL (19251 upstream) : DDX51 (1806 downstream)																							TCCTCCCACCTCCCGAGTGTGC	0.728													3	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	13	19985459	19985461	+	IGR	DEL	TGG	-	-			TCGA-EM-A3FQ-01A-11D-A21A-08	TCGA-EM-A3FQ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	79133e29-ba0b-4e2f-a6d9-bf294c5144f0	2125f0b1-c6b9-4b65-a6db-9fd4422e7c7e	g.chr13:19985459_19985461delTGG								LOC100101938 (66346 upstream) : TPTE2 (11560 downstream)																							atgtttctgttggtgatggatgg	0.192													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	13	114026111	114026112	+	IGR	INS	-	C	C	rs144165406	by1000genomes	TCGA-EM-A3FQ-01A-11D-A21A-08	TCGA-EM-A3FQ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	79133e29-ba0b-4e2f-a6d9-bf294c5144f0	2125f0b1-c6b9-4b65-a6db-9fd4422e7c7e	g.chr13:114026111_114026112insC								GRTP1 (7648 upstream) : ADPRHL1 (50148 downstream)																							tcctcctgaggcccctccatcc	0.025													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	14	21302181	21302182	+	IGR	INS	-	A	A			TCGA-EM-A3FQ-01A-11D-A21A-08	TCGA-EM-A3FQ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	79133e29-ba0b-4e2f-a6d9-bf294c5144f0	2125f0b1-c6b9-4b65-a6db-9fd4422e7c7e	g.chr14:21302181_21302182insA								RNASE1 (31145 upstream) : RNASE3 (57380 downstream)																							ccggtattaataaaaaaaaaaa	0.000													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	14	52754695	52754695	+	IGR	DEL	G	-	-			TCGA-EM-A3FQ-01A-11D-A21A-08	TCGA-EM-A3FQ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	79133e29-ba0b-4e2f-a6d9-bf294c5144f0	2125f0b1-c6b9-4b65-a6db-9fd4422e7c7e	g.chr14:52754695delG								PTGDR (11254 upstream) : PTGER2 (26321 downstream)																							aaaaaaaaaagaaaTGTCGCA	0.313													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	89129529	89129529	+	IGR	DEL	C	-	-			TCGA-EM-A3FQ-01A-11D-A21A-08	TCGA-EM-A3FQ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	79133e29-ba0b-4e2f-a6d9-bf294c5144f0	2125f0b1-c6b9-4b65-a6db-9fd4422e7c7e	g.chr16:89129529delC								CBFA2T3 (86128 upstream) : ACSF3 (30725 downstream)																							CCCTCCCAGGCCAGCACACAT	0.687													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	42025267	42025267	+	IGR	DEL	A	-	-	rs112096102		TCGA-EM-A3FQ-01A-11D-A21A-08	TCGA-EM-A3FQ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	79133e29-ba0b-4e2f-a6d9-bf294c5144f0	2125f0b1-c6b9-4b65-a6db-9fd4422e7c7e	g.chr17:42025267delA								PPY (5434 upstream) : PYY (4842 downstream)																							actccgtgtcaaaaaaaaaaa	0.259													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	68104886	68104888	+	IGR	DEL	CAG	-	-			TCGA-EM-A3FQ-01A-11D-A21A-08	TCGA-EM-A3FQ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	79133e29-ba0b-4e2f-a6d9-bf294c5144f0	2125f0b1-c6b9-4b65-a6db-9fd4422e7c7e	g.chr2:68104886_68104888delCAG								ETAA1 (467353 upstream) : C1D (164445 downstream)																							gcagcagcaacagcagcagcagc	0.419													2	4	---	---	---	---					
SDC4	6385	broad.mit.edu	37	20	43977067	43977067	+	5'Flank	DEL	C	-	-	rs17173360		TCGA-EM-A3FQ-01A-11D-A21A-08	TCGA-EM-A3FQ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	79133e29-ba0b-4e2f-a6d9-bf294c5144f0	2125f0b1-c6b9-4b65-a6db-9fd4422e7c7e	g.chr20:43977067delC	uc002xnu.2	-						SDC4_uc010zws.1_5'Flank	NM_002999	NP_002990	P31431	SDC4_HUMAN	syndecan 4 precursor							extracellular region|integral to plasma membrane	cytoskeletal protein binding|thrombospondin receptor activity				0		Myeloproliferative disorder(115;0.0122)				CGGCGAGTGGCCCCGGGCGGG	0.552													8	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	22	43191913	43191914	+	IGR	INS	-	A	A	rs142339424	by1000genomes	TCGA-EM-A3FQ-01A-11D-A21A-08	TCGA-EM-A3FQ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	79133e29-ba0b-4e2f-a6d9-bf294c5144f0	2125f0b1-c6b9-4b65-a6db-9fd4422e7c7e	g.chr22:43191913_43191914insA								A4GALT (74627 upstream) : ARFGAP3 (618 downstream)																							gggcaggggggagaccgagggg	0.188													2	4	---	---	---	---					
TMEM176B	28959	broad.mit.edu	37	7	150497809	150497810	+	5'Flank	INS	-	C	C			TCGA-EM-A3FQ-01A-11D-A21A-08	TCGA-EM-A3FQ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	79133e29-ba0b-4e2f-a6d9-bf294c5144f0	2125f0b1-c6b9-4b65-a6db-9fd4422e7c7e	g.chr7:150497809_150497810insC	uc003wht.3	-						TMEM176B_uc003whu.3_5'Flank|TMEM176B_uc003whv.3_5'Flank|TMEM176B_uc003whw.3_Intron|TMEM176A_uc003whx.1_5'Flank	NM_001101313	NP_001094783	Q3YBM2	T176B_HUMAN	transmembrane protein 176B isoform a						cell differentiation|organ morphogenesis	integral to membrane|nuclear membrane				ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CTGAAGTTCAGCCCCACCCCCG	0.718													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	157256293	157256293	+	IGR	DEL	A	-	-			TCGA-EM-A3FQ-01A-11D-A21A-08	TCGA-EM-A3FQ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	79133e29-ba0b-4e2f-a6d9-bf294c5144f0	2125f0b1-c6b9-4b65-a6db-9fd4422e7c7e	g.chr7:157256293delA								DNAJB6 (46161 upstream) : PTPRN2 (75458 downstream)																							atccgcccccaccccatcctc	0.040													3	4	---	---	---	---					
C9orf150	286343	broad.mit.edu	37	9	12775861	12775862	+	In_Frame_Ins	INS	-	GGCGGCGGC	GGCGGCGGC	rs139315731	by1000genomes	TCGA-EM-A3FQ-01A-11D-A21A-08	TCGA-EM-A3FQ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	79133e29-ba0b-4e2f-a6d9-bf294c5144f0	2125f0b1-c6b9-4b65-a6db-9fd4422e7c7e	g.chr9:12775861_12775862insGGCGGCGGC	uc003zkw.2	+	1	850_851	c.147_148insGGCGGCGGC	c.(145-150)insGGCGGCGGC	p.55_56insGGG		NM_203403	NP_981948	Q8IV03	CI150_HUMAN	hypothetical protein LOC286343	58_59	Gly-rich.										0				GBM - Glioblastoma multiforme(1;1.64e-13)		gcggtggtggtggcggcggcgg	0.505													3	6	---	---	---	---					
