Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
OTUD7B	56957	broad.mit.edu	37	1	149943019	149943019	+	Silent	SNP	G	A	A			TCGA-EM-A3O3-01A-11D-A21Z-08	TCGA-EM-A3O3-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	cdb360bf-44b7-4550-80df-f34bcddbcb0c	69ba99c4-bd56-4c2c-aeab-a4bc4fb12c1c	g.chr1:149943019G>A	uc001etn.2	-	3	602	c.246C>T	c.(244-246)ATC>ATT	p.I82I	OTUD7B_uc001eto.2_Missense_Mutation_p.S48F	NM_020205	NP_064590	Q6GQQ9	OTU7B_HUMAN	zinc finger protein Cezanne	82					negative regulation of I-kappaB kinase/NF-kappaB cascade	cytoplasm|microtubule cytoskeleton|nucleus	cysteine-type peptidase activity|DNA binding|protein binding|zinc ion binding			ovary(1)|breast(1)|skin(1)	3	Breast(34;0.0009)|Ovarian(49;0.0265)|all_hematologic(923;0.0597)|Hepatocellular(266;0.161)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.171)|STAD - Stomach adenocarcinoma(528;0.247)			GCCGCTGGAGGATGGGTCGGG	0.532000													8	141	---	---	---	---	0	0	1	0	0
C1orf56	54964	broad.mit.edu	37	1	151020356	151020356	+	Silent	SNP	C	T	T			TCGA-EM-A3O3-01A-11D-A21Z-08	TCGA-EM-A3O3-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	cdb360bf-44b7-4550-80df-f34bcddbcb0c	69ba99c4-bd56-4c2c-aeab-a4bc4fb12c1c	g.chr1:151020356C>T	uc001ewn.2	+	1	98	c.33C>T	c.(31-33)GTC>GTT	p.V11V		NM_017860	NP_060330	Q9BUN1	CA056_HUMAN	hypothetical protein LOC54964 precursor	11						extracellular region					0	Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.211)			TGCTGTGGGTCCTGCTGCTGA	0.697000													9	31	---	---	---	---	0	0	1	0	0
TCHH	7062	broad.mit.edu	37	1	152082180	152082180	+	Silent	SNP	G	C	C			TCGA-EM-A3O3-01A-11D-A21Z-08	TCGA-EM-A3O3-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	cdb360bf-44b7-4550-80df-f34bcddbcb0c	69ba99c4-bd56-4c2c-aeab-a4bc4fb12c1c	g.chr1:152082180G>C	uc001ezp.2	-	2	3513	c.3513C>G	c.(3511-3513)CGC>CGG	p.R1171R	TCHH_uc009wne.1_Silent_p.R1171R	NM_007113	NP_009044	Q07283	TRHY_HUMAN	trichohyalin	1171	4-9.|10 X 30 AA tandem repeats.				keratinization	cytoskeleton	calcium ion binding			ovary(3)|kidney(1)|central_nervous_system(1)	5	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			cctcttcctcGCGGTATTGCC	0.179000													7	213	---	---	---	---	0	0	1	0	0
CRNN	49860	broad.mit.edu	37	1	152382519	152382520	+	Missense_Mutation	DNP	TG	CA	CA			TCGA-EM-A3O3-01A-11D-A21Z-08	TCGA-EM-A3O3-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	cdb360bf-44b7-4550-80df-f34bcddbcb0c	69ba99c4-bd56-4c2c-aeab-a4bc4fb12c1c	g.chr1:152382519_152382520TG>CA	uc001ezx.2	-	3	1112_1113	c.1038_1039CA>TG	c.(1036-1041)CACACT>CATGCT	p.T347A		NM_016190	NP_057274	Q9UBG3	CRNN_HUMAN	cornulin	347	Gln-rich.				cell-cell adhesion|response to heat	cytoplasm|membrane	calcium ion binding			ovary(2)|skin(1)	3	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			TGTATCTGAGTGTGTCCTCCTG	0.594000													9	362	---	---	---	---	0	0	1	0	0
CRNN	49860	broad.mit.edu	37	1	152382590	152382590	+	Missense_Mutation	SNP	C	T	T			TCGA-EM-A3O3-01A-11D-A21Z-08	TCGA-EM-A3O3-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	cdb360bf-44b7-4550-80df-f34bcddbcb0c	69ba99c4-bd56-4c2c-aeab-a4bc4fb12c1c	g.chr1:152382590C>T	uc001ezx.2	-	3	1042	c.968G>A	c.(967-969)GGC>GAC	p.G323D		NM_016190	NP_057274	Q9UBG3	CRNN_HUMAN	cornulin	323	Gln-rich.				cell-cell adhesion|response to heat	cytoplasm|membrane	calcium ion binding			ovary(2)|skin(1)	3	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			TCTGTTCTGGCCATTGGTGGA	0.617000													12	463	---	---	---	---	0	0	1	0	0
SOAT1	6646	broad.mit.edu	37	1	179310209	179310209	+	Missense_Mutation	SNP	C	T	T			TCGA-EM-A3O3-01A-11D-A21Z-08	TCGA-EM-A3O3-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	cdb360bf-44b7-4550-80df-f34bcddbcb0c	69ba99c4-bd56-4c2c-aeab-a4bc4fb12c1c	g.chr1:179310209C>T	uc001gml.2	+	7	607	c.544C>T	c.(544-546)CCT>TCT	p.P182S	SOAT1_uc010pni.1_Missense_Mutation_p.P117S|SOAT1_uc001gmm.2_Missense_Mutation_p.P124S|SOAT1_uc010pnj.1_5'UTR|SOAT1_uc010pnk.1_Missense_Mutation_p.P117S	NM_003101	NP_003092	P35610	SOAT1_HUMAN	sterol O-acyltransferase 1	182					cholesterol efflux|cholesterol esterification|cholesterol homeostasis|cholesterol metabolic process|cholesterol storage|macrophage derived foam cell differentiation|positive regulation of amyloid precursor protein biosynthetic process|very-low-density lipoprotein particle assembly	endoplasmic reticulum membrane|integral to membrane|microsome	cholesterol binding|cholesterol O-acyltransferase activity|fatty-acyl-CoA binding			central_nervous_system(1)|skin(1)	2					Ezetimibe(DB00973)|Hesperetin(DB01094)	TGGCAAATTTCCTACCGTTGT	0.418000													43	48	---	---	---	---	0	0	1	0	0
SMG7	9887	broad.mit.edu	37	1	183520210	183520210	+	Missense_Mutation	SNP	C	T	T			TCGA-EM-A3O3-01A-11D-A21Z-08	TCGA-EM-A3O3-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	cdb360bf-44b7-4550-80df-f34bcddbcb0c	69ba99c4-bd56-4c2c-aeab-a4bc4fb12c1c	g.chr1:183520210C>T	uc001gqg.2	+	21	3307	c.3185C>T	c.(3184-3186)TCA>TTA	p.S1062L	SMG7_uc001gqf.2_Missense_Mutation_p.S1066L|SMG7_uc001gqh.2_Missense_Mutation_p.S1016L|SMG7_uc001gqi.2_Missense_Mutation_p.S974L|SMG7_uc010poc.1_Missense_Mutation_p.S1070L	NM_173156	NP_775179	Q92540	SMG7_HUMAN	SMG-7 homolog isoform 1	1062					mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of dephosphorylation	cytoplasm|intermediate filament cytoskeleton|nucleus	protein phosphatase 2A binding			upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						GATTATCTCTCAGCAACGTCA	0.517000													16	56	---	---	---	---	0	0	1	0	0
DSTYK	25778	broad.mit.edu	37	1	205138578	205138578	+	Missense_Mutation	SNP	A	T	T			TCGA-EM-A3O3-01A-11D-A21Z-08	TCGA-EM-A3O3-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	cdb360bf-44b7-4550-80df-f34bcddbcb0c	69ba99c4-bd56-4c2c-aeab-a4bc4fb12c1c	g.chr1:205138578A>T	uc001hbw.2	-	3	1101	c.1037T>A	c.(1036-1038)TTT>TAT	p.F346Y	DSTYK_uc001hbx.2_Missense_Mutation_p.F346Y|DSTYK_uc001hby.1_Intron	NM_015375	NP_056190	Q6XUX3	DUSTY_HUMAN	receptor interacting protein kinase 5 isoform 1	346						cytoplasm	ATP binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(1)	1						CTGGTGAGAAAATGTGCTCAA	0.522000													5	101	---	---	---	---	0	0	1	0	0
OBSCN	84033	broad.mit.edu	37	1	228465534	228465534	+	Silent	SNP	A	G	G			TCGA-EM-A3O3-01A-11D-A21Z-08	TCGA-EM-A3O3-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	cdb360bf-44b7-4550-80df-f34bcddbcb0c	69ba99c4-bd56-4c2c-aeab-a4bc4fb12c1c	g.chr1:228465534A>G	uc009xez.1	+	25	6878	c.6834A>G	c.(6832-6834)GAA>GAG	p.E2278E	OBSCN_uc001hsn.2_Silent_p.E2278E|OBSCN_uc001hsp.1_5'UTR|OBSCN_uc001hsq.1_5'Flank	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	2278					apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				AAAATGCAGAATCGCGAGCCC	0.617000													26	195	---	---	---	---	0	0	1	0	0
ZMIZ1	57178	broad.mit.edu	37	10	81060655	81060655	+	Missense_Mutation	SNP	C	G	G			TCGA-EM-A3O3-01A-11D-A21Z-08	TCGA-EM-A3O3-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	cdb360bf-44b7-4550-80df-f34bcddbcb0c	69ba99c4-bd56-4c2c-aeab-a4bc4fb12c1c	g.chr10:81060655C>G	uc001kaf.2	+	17	2547	c.1975C>G	c.(1975-1977)CCG>GCG	p.P659A	ZMIZ1_uc001kag.2_Missense_Mutation_p.P535A	NM_020338	NP_065071	Q9ULJ6	ZMIZ1_HUMAN	retinoic acid induced 17	659					transcription, DNA-dependent	cytoplasm|nuclear speck	zinc ion binding			ovary(2)|breast(1)|skin(1)	4	all_cancers(46;0.0292)|Breast(12;8.52e-05)|all_epithelial(25;0.000854)|Prostate(51;0.00985)		Epithelial(14;0.00256)|all cancers(16;0.00726)|Colorectal(32;0.229)			CGTGTGCCAGCCGGGCCGCAA	0.667000													36	73	---	---	---	---	0	0	1	0	0
ZFYVE27	118813	broad.mit.edu	37	10	99498333	99498333	+	Silent	SNP	A	G	G			TCGA-EM-A3O3-01A-11D-A21Z-08	TCGA-EM-A3O3-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	cdb360bf-44b7-4550-80df-f34bcddbcb0c	69ba99c4-bd56-4c2c-aeab-a4bc4fb12c1c	g.chr10:99498333A>G	uc001koo.2	+	2	299	c.99A>G	c.(97-99)CCA>CCG	p.P33P	ZFYVE27_uc001kon.2_Silent_p.P33P|ZFYVE27_uc001koq.2_Silent_p.P33P|ZFYVE27_uc010qpa.1_Silent_p.P33P|ZFYVE27_uc001kop.2_Silent_p.P33P|ZFYVE27_uc010qpb.1_Intron|ZFYVE27_uc010qpc.1_RNA|ZFYVE27_uc010qpd.1_Silent_p.P33P|ZFYVE27_uc001kok.1_RNA|ZFYVE27_uc001kol.1_Silent_p.P33P|ZFYVE27_uc001kom.1_Silent_p.P33P	NM_144588	NP_653189	Q5T4F4	ZFY27_HUMAN	zinc finger, FYVE domain containing 27 isoform	33	Cytoplasmic (Potential).				cell death|nerve growth factor receptor signaling pathway|neuron projection development|protein localization in plasma membrane	axon|dendrite|endoplasmic reticulum membrane|growth cone membrane|integral to membrane|recycling endosome membrane	metal ion binding|protein binding			ovary(1)	1		Colorectal(252;0.0846)		Epithelial(162;7.08e-10)|all cancers(201;5.18e-08)		CCAAGTCCCCAGCGTTTGACC	0.562000													28	60	---	---	---	---	0	0	1	0	0
PDCD4	27250	broad.mit.edu	37	10	112649373	112649373	+	Missense_Mutation	SNP	A	G	G			TCGA-EM-A3O3-01A-11D-A21Z-08	TCGA-EM-A3O3-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	cdb360bf-44b7-4550-80df-f34bcddbcb0c	69ba99c4-bd56-4c2c-aeab-a4bc4fb12c1c	g.chr10:112649373A>G	uc001kzh.2	+	7	1103	c.860A>G	c.(859-861)GAT>GGT	p.D287G	PDCD4_uc001kzg.2_Missense_Mutation_p.D276G|PDCD4_uc010qre.1_Missense_Mutation_p.D273G	NM_014456	NP_055271	Q53EL6	PDCD4_HUMAN	programmed cell death 4 isoform 1	287					apoptosis|cell aging|negative regulation of cell cycle|negative regulation of JUN kinase activity|negative regulation of transcription, DNA-dependent	cytosol|nucleus	protein binding|RNA binding			ovary(1)|breast(1)|skin(1)	3		Breast(234;0.0848)|Lung NSC(174;0.238)		Epithelial(162;0.000526)|all cancers(201;0.00794)|BRCA - Breast invasive adenocarcinoma(275;0.125)		GGAACTGTAGATTGTGTGCAG	0.338000													12	57	---	---	---	---	0	0	1	0	0
LOC653544	653544	broad.mit.edu	37	10	135491123	135491123	+	Missense_Mutation	SNP	G	A	A			TCGA-EM-A3O3-01A-11D-A21Z-08	TCGA-EM-A3O3-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	cdb360bf-44b7-4550-80df-f34bcddbcb0c	69ba99c4-bd56-4c2c-aeab-a4bc4fb12c1c	g.chr10:135491123G>A	uc010qvi.1	+	1	845	c.734G>A	c.(733-735)GGC>GAC	p.G245D		NM_001127389	NP_001120861	F5GZ66	F5GZ66_HUMAN	double homeobox, 4-like	245						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						GCCCACACCGGCGCGTGGGGA	0.786000													6	45	---	---	---	---	0	0	1	0	0
MUC5B	727897	broad.mit.edu	37	11	1269180	1269180	+	Silent	SNP	C	A	A			TCGA-EM-A3O3-01A-11D-A21Z-08	TCGA-EM-A3O3-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	cdb360bf-44b7-4550-80df-f34bcddbcb0c	69ba99c4-bd56-4c2c-aeab-a4bc4fb12c1c	g.chr11:1269180C>A	uc009ycr.1	+	50	12780	c.12654C>A	c.(12652-12654)ACC>ACA	p.T4218T	MUC5B_uc001ltb.2_Silent_p.T3693T	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	3690	7 X Cys-rich subdomain repeats.|11 X approximate tandem repeats, Ser/Thr- rich.|Thr-rich.			Missing (in Ref. 6; AAB61398).	cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		CGGGGACGACCTGGATCCTCA	0.622000													123	245	---	---	---	---	6.82392e-85	7.1709e-85	1	1	0
OR5D13	390142	broad.mit.edu	37	11	55541409	55541409	+	Missense_Mutation	SNP	C	A	A			TCGA-EM-A3O3-01A-11D-A21Z-08	TCGA-EM-A3O3-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	cdb360bf-44b7-4550-80df-f34bcddbcb0c	69ba99c4-bd56-4c2c-aeab-a4bc4fb12c1c	g.chr11:55541409C>A	uc010ril.1	+	1	496	c.496C>A	c.(496-498)CTT>ATT	p.L166I		NM_001001967	NP_001001967	Q8NGL4	OR5DD_HUMAN	olfactory receptor, family 5, subfamily D,	166	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3		all_epithelial(135;0.196)				ATATTTTCTTCTTGACTTATC	0.423000													24	65	---	---	---	---	1.64293e-13	1.6977e-13	1	1	0
OR10G4	390264	broad.mit.edu	37	11	123886643	123886643	+	Missense_Mutation	SNP	G	A	A			TCGA-EM-A3O3-01A-11D-A21Z-08	TCGA-EM-A3O3-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	cdb360bf-44b7-4550-80df-f34bcddbcb0c	69ba99c4-bd56-4c2c-aeab-a4bc4fb12c1c	g.chr11:123886643G>A	uc010sac.1	+	1	362	c.362G>A	c.(361-363)CGC>CAC	p.R121H		NM_001004462	NP_001004462	Q8NGN3	O10G4_HUMAN	olfactory receptor, family 10, subfamily G,	121	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0401)		TCCTATGATCGCTACTTGGCC	0.572000													33	118	---	---	---	---	0	0	1	0	0
PRB2	653247	broad.mit.edu	37	12	11546430	11546430	+	Silent	SNP	G	A	A			TCGA-EM-A3O3-01A-11D-A21Z-08	TCGA-EM-A3O3-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	cdb360bf-44b7-4550-80df-f34bcddbcb0c	69ba99c4-bd56-4c2c-aeab-a4bc4fb12c1c	g.chr12:11546430G>A	uc010shk.1	-	3	617	c.582C>T	c.(580-582)CCC>CCT	p.P194P		NM_006248	NP_006239			proline-rich protein BstNI subfamily 2												0		all_cancers(2;0.00558)|Acute lymphoblastic leukemia(2;3.94e-11)|all_hematologic(2;3.6e-09)	OV - Ovarian serous cystadenocarcinoma(49;0.185)			GAGGAGGTGGGGGACCTTGGG	0.607000													6	224	---	---	---	---	0	0	1	0	0
STAB2	55576	broad.mit.edu	37	12	104153016	104153016	+	Missense_Mutation	SNP	C	A	A			TCGA-EM-A3O3-01A-11D-A21Z-08	TCGA-EM-A3O3-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	cdb360bf-44b7-4550-80df-f34bcddbcb0c	69ba99c4-bd56-4c2c-aeab-a4bc4fb12c1c	g.chr12:104153016C>A	uc001tjw.2	+	65	7399	c.7213C>A	c.(7213-7215)CTG>ATG	p.L2405M	STAB2_uc009zug.2_RNA	NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	2405	Extracellular (Potential).|FAS1 7.				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						GGGAAGCAAGCTGCTCATCAC	0.478000													23	49	---	---	---	---	1.28384e-07	1.30489e-07	1	1	0
FAM101B	359845	broad.mit.edu	37	17	293075	293075	+	Silent	SNP	C	T	T			TCGA-EM-A3O3-01A-11D-A21Z-08	TCGA-EM-A3O3-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	cdb360bf-44b7-4550-80df-f34bcddbcb0c	69ba99c4-bd56-4c2c-aeab-a4bc4fb12c1c	g.chr17:293075C>T	uc002frj.2	-	2	589	c.315G>A	c.(313-315)AAG>AAA	p.K105K		NM_182705	NP_874364	Q8N5W9	F101B_HUMAN	hypothetical protein LOC359845	175											0		Myeloproliferative disorder(207;0.204)		UCEC - Uterine corpus endometrioid carcinoma (25;0.0216)		TGTAGACGGCCTTGGGGTACT	0.642000													16	36	---	---	---	---	0	0	1	0	0
TRPV3	162514	broad.mit.edu	37	17	3438882	3438882	+	Missense_Mutation	SNP	C	G	G			TCGA-EM-A3O3-01A-11D-A21Z-08	TCGA-EM-A3O3-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	cdb360bf-44b7-4550-80df-f34bcddbcb0c	69ba99c4-bd56-4c2c-aeab-a4bc4fb12c1c	g.chr17:3438882C>G	uc002fvt.1	-	7	1091	c.769G>C	c.(769-771)GAA>CAA	p.E257Q	TRPV3_uc002fvs.1_RNA|TRPV3_uc010vrh.1_Missense_Mutation_p.E241Q|TRPV3_uc010vri.1_Missense_Mutation_p.E212Q|TRPV3_uc010vrj.1_Missense_Mutation_p.E241Q|TRPV3_uc010vrk.1_RNA|TRPV3_uc010vrl.1_Missense_Mutation_p.E241Q|TRPV3_uc010vrm.1_RNA|TRPV3_uc002fvr.2_Missense_Mutation_p.E257Q|TRPV3_uc002fvu.2_Missense_Mutation_p.E257Q	NM_145068	NP_659505	Q8NET8	TRPV3_HUMAN	transient receptor potential cation channel,	257	Cytoplasmic (Potential).					integral to membrane	calcium channel activity			ovary(4)	4					Menthol(DB00825)	TAGAAGCCTTCGTGTTGGTAC	0.512000													20	38	---	---	---	---	0	0	1	0	0
Unknown	0	broad.mit.edu	37	17	21731144	21731144	+	Missense_Mutation	SNP	T	G	G	rs149119138	by1000genomes	TCGA-EM-A3O3-01A-11D-A21Z-08	TCGA-EM-A3O3-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	cdb360bf-44b7-4550-80df-f34bcddbcb0c	69ba99c4-bd56-4c2c-aeab-a4bc4fb12c1c	g.chr17:21731144T>G	uc002gyy.3	+	2	571	c.446T>G	c.(445-447)CTG>CGG	p.L149R						SubName: Full=cDNA FLJ51326, highly similar to Homo sapiens ubiquitin B (UBB), mRNA;																		GTCCTGCGTCTGAGAGGTGGT	0.542000													3	78	---	---	---	---	0	0	1	0	0
PCGF2	7703	broad.mit.edu	37	17	36895858	36895858	+	Missense_Mutation	SNP	G	A	A			TCGA-EM-A3O3-01A-11D-A21Z-08	TCGA-EM-A3O3-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	cdb360bf-44b7-4550-80df-f34bcddbcb0c	69ba99c4-bd56-4c2c-aeab-a4bc4fb12c1c	g.chr17:36895858G>A	uc002hqp.1	-	4	433	c.190C>T	c.(190-192)CGG>TGG	p.R64W	PCGF2_uc002hqn.1_Missense_Mutation_p.R64W|PCGF2_uc002hqo.1_Missense_Mutation_p.R64W|PCGF2_uc010cvo.1_5'UTR|PCGF2_uc002hqq.1_Missense_Mutation_p.R64W	NM_007144	NP_009075	P35227	PCGF2_HUMAN	ring finger protein 110	64					negative regulation of transcription from RNA polymerase II promoter	PcG protein complex	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding	p.R64W(1)		central_nervous_system(1)|skin(1)	2	Breast(7;9.07e-22)					AGCAGCGGCCGGGTTTTATGG	0.617000													32	96	---	---	---	---	0	0	1	0	0
DDX42	11325	broad.mit.edu	37	17	61885116	61885116	+	Missense_Mutation	SNP	G	A	A			TCGA-EM-A3O3-01A-11D-A21Z-08	TCGA-EM-A3O3-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	cdb360bf-44b7-4550-80df-f34bcddbcb0c	69ba99c4-bd56-4c2c-aeab-a4bc4fb12c1c	g.chr17:61885116G>A	uc002jbu.2	+	10	1136	c.879G>A	c.(877-879)ATG>ATA	p.M293I	DDX42_uc002jbv.2_Missense_Mutation_p.M293I|DDX42_uc002jbw.1_Missense_Mutation_p.M29I|DDX42_uc002jbx.2_Missense_Mutation_p.M29I	NM_007372	NP_031398	Q86XP3	DDX42_HUMAN	DEAD box polypeptide 42 protein	293	Helicase ATP-binding.				protein localization|regulation of anti-apoptosis	Cajal body|cytoplasm|nuclear speck	ATP binding|ATP-dependent helicase activity|protein binding|RNA binding			ovary(2)|skin(2)|large_intestine(1)	5						GTAGAGACATGATTGGTATTG	0.413000													37	76	---	---	---	---	0	0	1	0	0
NFATC1	4772	broad.mit.edu	37	18	77171140	77171140	+	Missense_Mutation	SNP	G	A	A			TCGA-EM-A3O3-01A-11D-A21Z-08	TCGA-EM-A3O3-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	cdb360bf-44b7-4550-80df-f34bcddbcb0c	69ba99c4-bd56-4c2c-aeab-a4bc4fb12c1c	g.chr18:77171140G>A	uc010xfg.1	+	2	1318	c.865G>A	c.(865-867)GGC>AGC	p.G289S	NFATC1_uc002lnc.1_Missense_Mutation_p.G289S|NFATC1_uc010xff.1_Missense_Mutation_p.G289S|NFATC1_uc002lnd.2_Missense_Mutation_p.G289S|NFATC1_uc002lne.2_Intron|NFATC1_uc010xfh.1_Missense_Mutation_p.G289S|NFATC1_uc010xfi.1_Missense_Mutation_p.G276S|NFATC1_uc010xfj.1_Intron|NFATC1_uc002lnf.2_Missense_Mutation_p.G276S|NFATC1_uc002lng.2_Missense_Mutation_p.G276S|NFATC1_uc010xfk.1_Missense_Mutation_p.G276S	NM_006162	NP_006153	O95644	NFAC1_HUMAN	nuclear factor of activated T-cells, cytosolic	289	3 X SP repeats.|3.				intracellular signal transduction|positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|nucleus	FK506 binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			large_intestine(1)|ovary(1)	2		Esophageal squamous(42;0.0157)|Melanoma(33;0.144)		OV - Ovarian serous cystadenocarcinoma(15;3.73e-07)|BRCA - Breast invasive adenocarcinoma(31;0.0257)		GTCCCCGCACGGCTCCCCGCG	0.687000													39	64	---	---	---	---	0	0	1	0	0
HDGFRP2	84717	broad.mit.edu	37	19	4498373	4498373	+	Silent	SNP	G	A	A			TCGA-EM-A3O3-01A-11D-A21Z-08	TCGA-EM-A3O3-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	cdb360bf-44b7-4550-80df-f34bcddbcb0c	69ba99c4-bd56-4c2c-aeab-a4bc4fb12c1c	g.chr19:4498373G>A	uc002mao.2	+	12	1566	c.1473G>A	c.(1471-1473)CCG>CCA	p.P491P	HDGFRP2_uc002map.2_Silent_p.P491P|HDGFRP2_uc010dtz.1_RNA|HDGFRP2_uc010dua.2_5'Flank|HDGFRP2_uc002maq.1_5'Flank	NM_001001520	NP_001001520	Q7Z4V5	HDGR2_HUMAN	hepatoma-derived growth factor-related protein 2	491					transcription, DNA-dependent	nucleus	DNA binding|protein binding				0						TCGACAGCCCGGTAAGACCCT	0.627000													7	16	---	---	---	---	0	0	1	0	0
ZNF714	148206	broad.mit.edu	37	19	21301008	21301008	+	Missense_Mutation	SNP	A	G	G			TCGA-EM-A3O3-01A-11D-A21Z-08	TCGA-EM-A3O3-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	cdb360bf-44b7-4550-80df-f34bcddbcb0c	69ba99c4-bd56-4c2c-aeab-a4bc4fb12c1c	g.chr19:21301008A>G	uc002npo.3	+	6	1901	c.1541A>G	c.(1540-1542)AAC>AGC	p.N514S	ZNF714_uc002npl.2_Missense_Mutation_p.N359S|ZNF714_uc010ecp.1_Missense_Mutation_p.N465S|ZNF714_uc002npn.2_RNA	NM_182515	NP_872321	Q96N38	ZN714_HUMAN	zinc finger protein 714	514				N -> S (in Ref. 2; CAD39077).	regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						tgtaatcccaacactttgaga	0.109000													3	15	---	---	---	---	0	0	1	0	0
FLT3LG	2323	broad.mit.edu	37	19	49979779	49979779	+	Missense_Mutation	SNP	C	T	T			TCGA-EM-A3O3-01A-11D-A21Z-08	TCGA-EM-A3O3-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	cdb360bf-44b7-4550-80df-f34bcddbcb0c	69ba99c4-bd56-4c2c-aeab-a4bc4fb12c1c	g.chr19:49979779C>T	uc010yau.1	+	5	388	c.298C>T	c.(298-300)CGC>TGC	p.R100C	FLT3LG_uc002pnv.2_Missense_Mutation_p.R18C|FLT3LG_uc002pnw.2_Missense_Mutation_p.R18C|FLT3LG_uc002pnu.2_Missense_Mutation_p.R100C|FLT3LG_uc002pnx.2_Missense_Mutation_p.R100C|FLT3LG_uc010yav.1_Missense_Mutation_p.R18C	NM_001459	NP_001450	P49771	FLT3L_HUMAN	fms-related tyrosine kinase 3 ligand precursor	100	Extracellular (Potential).				positive regulation of cell proliferation|signal transduction	extracellular space|integral to membrane|plasma membrane|soluble fraction	cytokine activity				0		all_lung(116;1.62e-07)|Lung NSC(112;8.47e-07)|all_neural(266;0.0381)|Ovarian(192;0.0392)		OV - Ovarian serous cystadenocarcinoma(262;0.00154)|GBM - Glioblastoma multiforme(486;0.0246)		CTTGCTGGAGCGCGTGAACAC	0.592000											OREG0025623	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	13	51	---	---	---	---	0	0	1	0	0
SCAF1	58506	broad.mit.edu	37	19	50154329	50154329	+	Missense_Mutation	SNP	A	G	G			TCGA-EM-A3O3-01A-11D-A21Z-08	TCGA-EM-A3O3-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	cdb360bf-44b7-4550-80df-f34bcddbcb0c	69ba99c4-bd56-4c2c-aeab-a4bc4fb12c1c	g.chr19:50154329A>G	uc002poq.2	+	7	807	c.683A>G	c.(682-684)TAT>TGT	p.Y228C		NM_021228	NP_067051	Q9H7N4	SFR19_HUMAN	SR-related CTD-associated factor 1	228	Pro-rich.				mRNA processing|RNA splicing	nucleus	RNA binding				0		all_lung(116;1.05e-05)|Lung NSC(112;3.77e-05)|all_neural(266;0.196)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.00113)|GBM - Glioblastoma multiforme(134;0.0204)		TTCGATATCTATGACCCCTTC	0.478000													27	52	---	---	---	---	0	0	1	0	0
ZNF613	79898	broad.mit.edu	37	19	52443516	52443516	+	Missense_Mutation	SNP	C	T	T			TCGA-EM-A3O3-01A-11D-A21Z-08	TCGA-EM-A3O3-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	cdb360bf-44b7-4550-80df-f34bcddbcb0c	69ba99c4-bd56-4c2c-aeab-a4bc4fb12c1c	g.chr19:52443516C>T	uc002pxz.1	+	4	493	c.70C>T	c.(70-72)CTC>TTC	p.L24F	ZNF613_uc002pya.1_5'UTR	NM_001031721	NP_001026891	Q6PF04	ZN613_HUMAN	zinc finger protein 613 isoform 1	24	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		all_neural(266;0.117)		GBM - Glioblastoma multiforme(134;0.00148)|OV - Ovarian serous cystadenocarcinoma(262;0.0183)		GGAGTGGCAGCTCCTCGGCCC	0.512000													52	78	---	---	---	---	0	0	1	0	0
ZNF497	162968	broad.mit.edu	37	19	58868467	58868467	+	Missense_Mutation	SNP	G	C	C			TCGA-EM-A3O3-01A-11D-A21Z-08	TCGA-EM-A3O3-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	cdb360bf-44b7-4550-80df-f34bcddbcb0c	69ba99c4-bd56-4c2c-aeab-a4bc4fb12c1c	g.chr19:58868467G>C	uc002qsh.1	-	3	724	c.535C>G	c.(535-537)CAC>GAC	p.H179D	A1BG_uc002qsf.1_Intron|ZNF497_uc002qsi.1_Missense_Mutation_p.H179D|uc002qsj.1_5'UTR|uc002qsk.1_5'Flank	NM_198458	NP_940860	Q6ZNH5	ZN497_HUMAN	zinc finger protein 497	179	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(2)	2		all_cancers(17;3.11e-12)|all_epithelial(17;9.43e-09)|Colorectal(82;0.000256)|Lung NSC(17;0.000607)|all_lung(17;0.0024)|all_neural(62;0.0412)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0278)		TCCTGGTGGTGGATGAGCTGC	0.677000													8	22	---	---	---	---	0	0	1	0	0
GULP1	51454	broad.mit.edu	37	2	189452645	189452645	+	Missense_Mutation	SNP	C	T	T			TCGA-EM-A3O3-01A-11D-A21Z-08	TCGA-EM-A3O3-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	cdb360bf-44b7-4550-80df-f34bcddbcb0c	69ba99c4-bd56-4c2c-aeab-a4bc4fb12c1c	g.chr2:189452645C>T	uc010fru.2	+	11	1273	c.812C>T	c.(811-813)CCA>CTA	p.P271L	GULP1_uc002uqd.2_Missense_Mutation_p.P271L|GULP1_uc010zfw.1_Missense_Mutation_p.P168L|GULP1_uc002uqf.2_Missense_Mutation_p.P271L|GULP1_uc002uqg.2_Missense_Mutation_p.P271L|GULP1_uc002uqh.1_Missense_Mutation_p.P91L	NM_016315	NP_057399	Q9UBP9	GULP1_HUMAN	GULP, engulfment adaptor PTB domain containing	271					apoptosis|lipid transport|phagocytosis, engulfment	cytoplasm|intracellular membrane-bounded organelle	signal transducer activity			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.0423)|Epithelial(96;0.158)			GATTTCCCTCCAGATATTCAA	0.358000													16	33	---	---	---	---	0	0	1	0	0
CPS1	1373	broad.mit.edu	37	2	211457603	211457604	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EM-A3O3-01A-11D-A21Z-08	TCGA-EM-A3O3-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	cdb360bf-44b7-4550-80df-f34bcddbcb0c	69ba99c4-bd56-4c2c-aeab-a4bc4fb12c1c	g.chr2:211457603_211457604GG>AA	uc002vee.3	+	11	1219_1220	c.1087_1088GG>AA	c.(1087-1089)GGG>AAG	p.G363K	CPS1_uc010fur.2_Missense_Mutation_p.G369K|CPS1_uc010fus.2_5'Flank	NM_001875	NP_001866	P31327	CPSM_HUMAN	carbamoyl-phosphate synthetase 1 isoform b	363	Glutamine amidotransferase type-1.				carbamoyl phosphate biosynthetic process|citrulline biosynthetic process|glutamine metabolic process|glycogen catabolic process|nitric oxide metabolic process|positive regulation of vasodilation|response to lipopolysaccharide|triglyceride catabolic process|urea cycle	mitochondrial nucleoid	ATP binding|carbamoyl-phosphate synthase (ammonia) activity			ovary(8)|central_nervous_system(3)|breast(1)|skin(1)	13				Epithelial(149;0.00697)|Lung(261;0.0521)|LUSC - Lung squamous cell carcinoma(261;0.0544)|all cancers(144;0.0843)		ATTCCTTTAGGGGATTATGCAT	0.421000													26	58	---	---	---	---	0	0	1	0	0
BTBD3	22903	broad.mit.edu	37	20	11904148	11904148	+	Missense_Mutation	SNP	C	T	T			TCGA-EM-A3O3-01A-11D-A21Z-08	TCGA-EM-A3O3-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	cdb360bf-44b7-4550-80df-f34bcddbcb0c	69ba99c4-bd56-4c2c-aeab-a4bc4fb12c1c	g.chr20:11904148C>T	uc002wnz.2	+	4	1762	c.1403C>T	c.(1402-1404)ACA>ATA	p.T468I	BTBD3_uc002wny.2_Missense_Mutation_p.T407I|BTBD3_uc002woa.2_Missense_Mutation_p.T407I|BTBD3_uc010zrf.1_Missense_Mutation_p.T317I|BTBD3_uc010zrg.1_Missense_Mutation_p.T317I|BTBD3_uc010zrh.1_Missense_Mutation_p.T317I	NM_014962	NP_055777	Q9Y2F9	BTBD3_HUMAN	BTB/POZ domain containing protein 3 isoform a	468										ovary(2)|central_nervous_system(1)	3						ACCTTCTACACAGCCAGTGTG	0.493000													10	33	---	---	---	---	0	0	1	0	0
NINL	22981	broad.mit.edu	37	20	25507167	25507167	+	Silent	SNP	G	A	A			TCGA-EM-A3O3-01A-11D-A21Z-08	TCGA-EM-A3O3-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	cdb360bf-44b7-4550-80df-f34bcddbcb0c	69ba99c4-bd56-4c2c-aeab-a4bc4fb12c1c	g.chr20:25507167G>A	uc002wux.1	-	2	131	c.57C>T	c.(55-57)TGC>TGT	p.C19C	NINL_uc010gdn.1_Silent_p.C19C|NINL_uc010gdo.1_5'UTR|NINL_uc010ztf.1_Silent_p.C35C	NM_025176	NP_079452	Q9Y2I6	NINL_HUMAN	ninein-like	19	EF-hand 1.				G2/M transition of mitotic cell cycle	cytosol|microtubule|microtubule organizing center	calcium ion binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5						CCGTGGTGTCGCAGCTGCTGT	0.577000													48	66	---	---	---	---	0	0	1	0	0
KIAA1755	85449	broad.mit.edu	37	20	36869104	36869104	+	Missense_Mutation	SNP	T	C	C			TCGA-EM-A3O3-01A-11D-A21Z-08	TCGA-EM-A3O3-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	cdb360bf-44b7-4550-80df-f34bcddbcb0c	69ba99c4-bd56-4c2c-aeab-a4bc4fb12c1c	g.chr20:36869104T>C	uc002xhy.1	-	3	1701	c.1429A>G	c.(1429-1431)AGA>GGA	p.R477G	KIAA1755_uc002xhz.1_Missense_Mutation_p.R477G	NM_001029864	NP_001025035	Q5JYT7	K1755_HUMAN	hypothetical protein LOC85449	477										ovary(4)|pancreas(1)	5		Myeloproliferative disorder(115;0.00874)				CTCTGCCCTCTCAAGAATGAG	0.572000													4	51	---	---	---	---	0	0	1	0	0
CCDC157	550631	broad.mit.edu	37	22	30772567	30772567	+	Missense_Mutation	SNP	T	C	C			TCGA-EM-A3O3-01A-11D-A21Z-08	TCGA-EM-A3O3-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	cdb360bf-44b7-4550-80df-f34bcddbcb0c	69ba99c4-bd56-4c2c-aeab-a4bc4fb12c1c	g.chr22:30772567T>C	uc011aku.1	+	12	2752	c.2092T>C	c.(2092-2094)TCT>CCT	p.S698P	CCDC157_uc011akv.1_Missense_Mutation_p.S698P|uc003aho.1_5'Flank	NM_001017437	NP_001017437	Q569K6	CC157_HUMAN	coiled-coil domain containing 157	698										central_nervous_system(1)	1						CACATCCCCATCTCGGCAGCC	0.667000													8	287	---	---	---	---	0	0	1	0	0
TRIOBP	11078	broad.mit.edu	37	22	38120282	38120282	+	Silent	SNP	C	T	T			TCGA-EM-A3O3-01A-11D-A21Z-08	TCGA-EM-A3O3-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	cdb360bf-44b7-4550-80df-f34bcddbcb0c	69ba99c4-bd56-4c2c-aeab-a4bc4fb12c1c	g.chr22:38120282C>T	uc003atr.2	+	7	1990	c.1719C>T	c.(1717-1719)GAC>GAT	p.D573D	TRIOBP_uc003atu.2_Silent_p.D401D|TRIOBP_uc003atq.1_Silent_p.D573D|TRIOBP_uc003ats.1_Silent_p.D401D	NM_001039141	NP_001034230	Q9H2D6	TARA_HUMAN	TRIO and F-actin binding protein isoform 6	573					actin modification|barbed-end actin filament capping	actin cytoskeleton|cytoplasm|nucleus	actin binding|GTP-Rho binding|myosin II binding|protein binding|ubiquitin protein ligase binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					CCACACGAGACAACCCCAGAA	0.587000													5	134	---	---	---	---	0	0	1	0	0
CASP6	839	broad.mit.edu	37	4	110617580	110617580	+	Missense_Mutation	SNP	A	T	T			TCGA-EM-A3O3-01A-11D-A21Z-08	TCGA-EM-A3O3-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	cdb360bf-44b7-4550-80df-f34bcddbcb0c	69ba99c4-bd56-4c2c-aeab-a4bc4fb12c1c	g.chr4:110617580A>T	uc003hzn.1	-	4	371	c.293T>A	c.(292-294)CTC>CAC	p.L98H	CASP6_uc003hzo.1_Intron	NM_001226	NP_001217	P55212	CASP6_HUMAN	caspase 6 isoform alpha preproprotein	98					cellular component disassembly involved in apoptosis|induction of apoptosis|proteolysis	cytosol|nucleoplasm	cysteine-type endopeptidase activity|protein binding			ovary(1)|breast(1)	2		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.000171)		ATGAATTTTGAGCAGTAGTTC	0.328000													13	15	---	---	---	---	0	0	1	0	0
BDP1	55814	broad.mit.edu	37	5	70800541	70800541	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EM-A3O3-01A-11D-A21Z-08	TCGA-EM-A3O3-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	cdb360bf-44b7-4550-80df-f34bcddbcb0c	69ba99c4-bd56-4c2c-aeab-a4bc4fb12c1c	g.chr5:70800541C>T	uc003kbp.1	+	16	2598	c.2335C>T	c.(2335-2337)CAG>TAG	p.Q779*	BDP1_uc003kbn.1_Nonsense_Mutation_p.Q779*|BDP1_uc003kbo.2_Nonsense_Mutation_p.Q779*	NM_018429	NP_060899	A6H8Y1	BDP1_HUMAN	transcription factor-like nuclear regulator	779					regulation of transcription, DNA-dependent|transcription from RNA polymerase III promoter	nucleoplasm	DNA binding			skin(2)	2		Lung NSC(167;0.000422)|Prostate(74;0.00815)|Ovarian(174;0.0176)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;5.28e-56)|Epithelial(20;2.31e-50)		TCAAAATGTGCAGCCAGATGA	0.333000													11	27	---	---	---	---	0	0	1	0	0
HK3	3101	broad.mit.edu	37	5	176311066	176311066	+	Silent	SNP	A	G	G			TCGA-EM-A3O3-01A-11D-A21Z-08	TCGA-EM-A3O3-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	cdb360bf-44b7-4550-80df-f34bcddbcb0c	69ba99c4-bd56-4c2c-aeab-a4bc4fb12c1c	g.chr5:176311066A>G	uc003mfa.2	-	14	2019	c.1927T>C	c.(1927-1929)TTG>CTG	p.L643L	HK3_uc003mez.2_Silent_p.L199L	NM_002115	NP_002106	P52790	HXK3_HUMAN	hexokinase 3	643	Catalytic.				glucose transport|glycolysis|transmembrane transport	cytosol|membrane	ATP binding|glucokinase activity			ovary(3)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)|skin(1)	7	all_cancers(89;0.000104)|Renal(175;0.000269)|Lung NSC(126;0.00696)|all_lung(126;0.0115)	Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GCTTCCCGCAACAGACTCACG	0.577000													47	81	---	---	---	---	0	0	1	0	0
MUC21	394263	broad.mit.edu	37	6	30954299	30954299	+	Missense_Mutation	SNP	G	A	A			TCGA-EM-A3O3-01A-11D-A21Z-08	TCGA-EM-A3O3-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	cdb360bf-44b7-4550-80df-f34bcddbcb0c	69ba99c4-bd56-4c2c-aeab-a4bc4fb12c1c	g.chr6:30954299G>A	uc003nsh.2	+	2	598	c.347G>A	c.(346-348)GGG>GAG	p.G116E	MUC21_uc003nsi.1_RNA	NM_001010909	NP_001010909	Q5SSG8	MUC21_HUMAN	mucin 21 precursor	116	Ser-rich.|28 X 15 AA approximate tandem repeats.|6.|Extracellular (Potential).					integral to membrane|plasma membrane				ovary(1)|skin(1)	2						ACCTCCAGTGGGGCCAGCACA	0.597000													11	314	---	---	---	---	0	0	1	0	0
LYPLA2P1	653639	broad.mit.edu	37	6	33333333	33333333	+	Missense_Mutation	SNP	G	A	A			TCGA-EM-A3O3-01A-11D-A21Z-08	TCGA-EM-A3O3-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	cdb360bf-44b7-4550-80df-f34bcddbcb0c	69ba99c4-bd56-4c2c-aeab-a4bc4fb12c1c	g.chr6:33333333G>A	uc003shx.2	-	1	807	c.673C>T	c.(673-675)CCT>TCT	p.P225S		NR_001444				SubName: Full=Lysophospholipase II; Flags: Fragment;												0						AGTTAGACAGGAGGCAGCAGC	0.577000													4	17	---	---	---	---	0	0	1	0	0
LYPLA2P1	653639	broad.mit.edu	37	6	33333342	33333342	+	Silent	SNP	G	A	A	rs140475230	by1000genomes	TCGA-EM-A3O3-01A-11D-A21Z-08	TCGA-EM-A3O3-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	cdb360bf-44b7-4550-80df-f34bcddbcb0c	69ba99c4-bd56-4c2c-aeab-a4bc4fb12c1c	g.chr6:33333342G>A	uc003shx.2	-	1	798	c.664C>T	c.(664-666)CTG>TTG	p.L222L		NR_001444				SubName: Full=Lysophospholipase II; Flags: Fragment;												0						GGAGGCAGCAGCTTCTCAAGA	0.562000													4	20	---	---	---	---	0	0	1	0	0
PKHD1	5314	broad.mit.edu	37	6	51921515	51921515	+	Silent	SNP	G	A	A			TCGA-EM-A3O3-01A-11D-A21Z-08	TCGA-EM-A3O3-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	cdb360bf-44b7-4550-80df-f34bcddbcb0c	69ba99c4-bd56-4c2c-aeab-a4bc4fb12c1c	g.chr6:51921515G>A	uc003pah.1	-	18	1950	c.1674C>T	c.(1672-1674)CTC>CTT	p.L558L	PKHD1_uc003pai.2_Silent_p.L558L	NM_138694	NP_619639	P08F94	PKHD1_HUMAN	fibrocystin isoform 1	558	Extracellular (Potential).				cell-cell adhesion|cilium assembly|homeostatic process|kidney development|negative regulation of cellular component movement	anchored to external side of plasma membrane|apical plasma membrane|integral to membrane|microtubule basal body	protein binding|receptor activity			lung(15)|ovary(15)|large_intestine(5)|central_nervous_system(3)|skin(3)|breast(2)|upper_aerodigestive_tract(1)	44	Lung NSC(77;0.0605)					ATCCAAGCCGGAGAAGGATGT	0.393000													24	54	---	---	---	---	0	0	1	0	0
C7orf27	221927	broad.mit.edu	37	7	2582951	2582951	+	Silent	SNP	G	A	A			TCGA-EM-A3O3-01A-11D-A21Z-08	TCGA-EM-A3O3-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	cdb360bf-44b7-4550-80df-f34bcddbcb0c	69ba99c4-bd56-4c2c-aeab-a4bc4fb12c1c	g.chr7:2582951G>A	uc003smi.2	-	6	852	c.810C>T	c.(808-810)CCC>CCT	p.P270P	C7orf27_uc003smh.3_5'Flank|C7orf27_uc003smj.1_3'UTR	NM_152743	NP_689956	Q6PJG6	BRAT1_HUMAN	hypothetical protein LOC221927 precursor	270					response to ionizing radiation	nucleus	protein binding				0		Ovarian(82;0.0779)		OV - Ovarian serous cystadenocarcinoma(56;2.91e-14)		AACTGAACACGGGAGAACTGC	0.627000													28	51	---	---	---	---	0	0	1	0	0
ITGB8	3696	broad.mit.edu	37	7	20403260	20403260	+	Missense_Mutation	SNP	A	C	C			TCGA-EM-A3O3-01A-11D-A21Z-08	TCGA-EM-A3O3-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	cdb360bf-44b7-4550-80df-f34bcddbcb0c	69ba99c4-bd56-4c2c-aeab-a4bc4fb12c1c	g.chr7:20403260A>C	uc003suu.2	+	2	833	c.128A>C	c.(127-129)GAA>GCA	p.E43A	ITGB8_uc011jyh.1_5'UTR|ITGB8_uc003sut.2_Missense_Mutation_p.E43A	NM_002214	NP_002205	P26012	ITB8_HUMAN	integrin, beta 8 precursor	43	Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|placenta blood vessel development	integrin complex	protein binding|receptor activity			skin(3)	3						TTCATTGCAGAAGACAATAGA	0.333000													8	15	---	---	---	---	0	0	1	0	0
ZAN	7455	broad.mit.edu	37	7	100349878	100349878	+	Missense_Mutation	SNP	C	T	T			TCGA-EM-A3O3-01A-11D-A21Z-08	TCGA-EM-A3O3-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	cdb360bf-44b7-4550-80df-f34bcddbcb0c	69ba99c4-bd56-4c2c-aeab-a4bc4fb12c1c	g.chr7:100349878C>T	uc003uwj.2	+	14	2315	c.2150C>T	c.(2149-2151)CCC>CTC	p.P717L	ZAN_uc003uwk.2_Missense_Mutation_p.P717L|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	717	66 X heptapeptide repeats (approximate) (mucin-like domain).|Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			CCAGAAAAACCCACCATCCCC	0.507000													7	134	---	---	---	---	0	0	1	0	0
ZAN	7455	broad.mit.edu	37	7	100349973	100349973	+	Missense_Mutation	SNP	A	C	C			TCGA-EM-A3O3-01A-11D-A21Z-08	TCGA-EM-A3O3-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	cdb360bf-44b7-4550-80df-f34bcddbcb0c	69ba99c4-bd56-4c2c-aeab-a4bc4fb12c1c	g.chr7:100349973A>C	uc003uwj.2	+	14	2410	c.2245A>C	c.(2245-2247)ACA>CCA	p.T749P	ZAN_uc003uwk.2_Missense_Mutation_p.T749P|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	749	66 X heptapeptide repeats (approximate) (mucin-like domain).|Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			CACCATCCCCACAGAAAAACC	0.517000													6	147	---	---	---	---	0	0	1	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-EM-A3O3-01A-11D-A21Z-08	TCGA-EM-A3O3-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	cdb360bf-44b7-4550-80df-f34bcddbcb0c	69ba99c4-bd56-4c2c-aeab-a4bc4fb12c1c	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				17	32	---	---	---	---	0	0	1	0	0
Unknown	0	broad.mit.edu	37	MT	3608	3608	+	RNA	SNP	G	A	A			TCGA-EM-A3O3-01A-11D-A21Z-08	TCGA-EM-A3O3-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	cdb360bf-44b7-4550-80df-f34bcddbcb0c	69ba99c4-bd56-4c2c-aeab-a4bc4fb12c1c	g.chrM:3608G>A	uc004cos.3	+	2		c.1901G>A			uc011mfh.1_5'Flank					Homo sapiens mRNA expressed only in placental villi, clone SMAP47.																		CCTCAACCTAGGCCTCCTATT	0.547000													20	33	---	---	---	---	0	0	1	0	0
COL11A1	1301	broad.mit.edu	37	1	103355065	103355065	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EM-A3O3-01A-11D-A21Z-08	TCGA-EM-A3O3-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	cdb360bf-44b7-4550-80df-f34bcddbcb0c	69ba99c4-bd56-4c2c-aeab-a4bc4fb12c1c	g.chr1:103355065delT	uc001dul.2	-	59	4728	c.4410delA	c.(4408-4410)AAAfs	p.K1470fs	COL11A1_uc001duk.2_Frame_Shift_Del_p.K666fs|COL11A1_uc001dum.2_Frame_Shift_Del_p.K1482fs|COL11A1_uc001dun.2_Frame_Shift_Del_p.K1431fs|COL11A1_uc009weh.2_Frame_Shift_Del_p.K1354fs	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A	1470	Triple-helical region.				collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		CTCGGTCACCTTTTTCCCCTT	0.403													7	157	---	---	---	---					
PRG4	10216	broad.mit.edu	37	1	186276374	186276376	+	In_Frame_Del	DEL	CCA	-	-			TCGA-EM-A3O3-01A-11D-A21Z-08	TCGA-EM-A3O3-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	cdb360bf-44b7-4550-80df-f34bcddbcb0c	69ba99c4-bd56-4c2c-aeab-a4bc4fb12c1c	g.chr1:186276374_186276376delCCA	uc001gru.3	+	7	1574_1576	c.1523_1525delCCA	c.(1522-1527)CCCACC>CCC	p.T511del	PRG4_uc001grt.3_In_Frame_Del_p.T470del|PRG4_uc009wyl.2_In_Frame_Del_p.T418del|PRG4_uc009wym.2_In_Frame_Del_p.T377del|PRG4_uc010poo.1_Intron	NM_005807	NP_005798	Q92954	PRG4_HUMAN	proteoglycan 4 isoform A	511	59 X 8 AA repeats of K-X-P-X-P-T-T-X.|21.				cell proliferation|immune response	extracellular region	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						GAGCCTGCACCCACCACCACCAA	0.645													12	622	---	---	---	---					
PRG4	10216	broad.mit.edu	37	1	186276524	186276526	+	In_Frame_Del	DEL	AGG	-	-			TCGA-EM-A3O3-01A-11D-A21Z-08	TCGA-EM-A3O3-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	cdb360bf-44b7-4550-80df-f34bcddbcb0c	69ba99c4-bd56-4c2c-aeab-a4bc4fb12c1c	g.chr1:186276524_186276526delAGG	uc001gru.3	+	7	1724_1726	c.1673_1675delAGG	c.(1672-1677)AAGGAG>AAG	p.E559del	PRG4_uc001grt.3_In_Frame_Del_p.E518del|PRG4_uc009wyl.2_In_Frame_Del_p.E466del|PRG4_uc009wym.2_In_Frame_Del_p.E425del|PRG4_uc010poo.1_Intron	NM_005807	NP_005798	Q92954	PRG4_HUMAN	proteoglycan 4 isoform A	559	28.|59 X 8 AA repeats of K-X-P-X-P-T-T-X.				cell proliferation|immune response	extracellular region	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						ACCACCACCAAGGAGCCTGCACC	0.635													18	524	---	---	---	---					
PRG4	10216	broad.mit.edu	37	1	186276548	186276550	+	In_Frame_Del	DEL	AGG	-	-			TCGA-EM-A3O3-01A-11D-A21Z-08	TCGA-EM-A3O3-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	cdb360bf-44b7-4550-80df-f34bcddbcb0c	69ba99c4-bd56-4c2c-aeab-a4bc4fb12c1c	g.chr1:186276548_186276550delAGG	uc001gru.3	+	7	1748_1750	c.1697_1699delAGG	c.(1696-1701)AAGGAG>AAG	p.E567del	PRG4_uc001grt.3_In_Frame_Del_p.E526del|PRG4_uc009wyl.2_In_Frame_Del_p.E474del|PRG4_uc009wym.2_In_Frame_Del_p.E433del|PRG4_uc010poo.1_Intron	NM_005807	NP_005798	Q92954	PRG4_HUMAN	proteoglycan 4 isoform A	567	59 X 8 AA repeats of K-X-P-X-P-T-T-X.|29.				cell proliferation|immune response	extracellular region	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						ACCACTCCCAAGGAGCCTGCACC	0.635													7	465	---	---	---	---					
Unknown	0	broad.mit.edu	37	1	248604559	248604560	+	IGR	INS	-	TC	TC	rs150497047	by1000genomes	TCGA-EM-A3O3-01A-11D-A21Z-08	TCGA-EM-A3O3-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	cdb360bf-44b7-4550-80df-f34bcddbcb0c	69ba99c4-bd56-4c2c-aeab-a4bc4fb12c1c	g.chr1:248604559_248604560insTC								OR2T1 (34155 upstream) : OR2T2 (11539 downstream)																							TTCCCCTGGCTTCTTTGCCCTC	0.515													2	4	---	---	---	---					
PCDH15	65217	broad.mit.edu	37	10	55587198	55587200	+	In_Frame_Del	DEL	GGC	-	-	rs12246234		TCGA-EM-A3O3-01A-11D-A21Z-08	TCGA-EM-A3O3-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	cdb360bf-44b7-4550-80df-f34bcddbcb0c	69ba99c4-bd56-4c2c-aeab-a4bc4fb12c1c	g.chr10:55587198_55587200delGGC	uc001jju.1	-	32	4715_4717	c.4320_4322delGCC	c.(4318-4323)CCGCCT>CCT	p.1440_1441PP>P	PCDH15_uc010qhq.1_In_Frame_Del_p.1445_1446PP>P|PCDH15_uc010qhr.1_In_Frame_Del_p.1440_1441PP>P|PCDH15_uc010qhs.1_In_Frame_Del_p.1452_1453PP>P|PCDH15_uc010qht.1_In_Frame_Del_p.1447_1448PP>P|PCDH15_uc010qhu.1_In_Frame_Del_p.1440_1441PP>P|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_In_Frame_Del_p.1437_1438PP>P|PCDH15_uc010qhw.1_In_Frame_Del_p.1400_1401PP>P|PCDH15_uc010qhx.1_In_Frame_Del_p.1369_1370PP>P|PCDH15_uc010qhy.1_In_Frame_Del_p.1445_1446PP>P|PCDH15_uc010qhz.1_In_Frame_Del_p.1440_1441PP>P|PCDH15_uc010qia.1_In_Frame_Del_p.1418_1419PP>P|PCDH15_uc010qib.1_In_Frame_Del_p.1415_1416PP>P	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	1440_1441	Poly-Pro.|Cytoplasmic (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				ACCTggcggaggcggcggcggcg	0.438										HNSCC(58;0.16)			7	197	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	130262778	130262778	+	IGR	DEL	C	-	-			TCGA-EM-A3O3-01A-11D-A21Z-08	TCGA-EM-A3O3-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	cdb360bf-44b7-4550-80df-f34bcddbcb0c	69ba99c4-bd56-4c2c-aeab-a4bc4fb12c1c	g.chr10:130262778delC								MKI67 (338310 upstream) : None (None downstream)																							tcctcctcctccaccatcctc	0.000													7	140	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	130262847	130262848	+	IGR	INS	-	A	A	rs113379517		TCGA-EM-A3O3-01A-11D-A21Z-08	TCGA-EM-A3O3-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	cdb360bf-44b7-4550-80df-f34bcddbcb0c	69ba99c4-bd56-4c2c-aeab-a4bc4fb12c1c	g.chr10:130262847_130262848insA								MKI67 (338379 upstream) : None (None downstream)																							cctcctcctccccatcctcccc	0.109													7	167	---	---	---	---					
Unknown	0	broad.mit.edu	37	12	43072603	43072603	+	IGR	DEL	T	-	-			TCGA-EM-A3O3-01A-11D-A21Z-08	TCGA-EM-A3O3-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	cdb360bf-44b7-4550-80df-f34bcddbcb0c	69ba99c4-bd56-4c2c-aeab-a4bc4fb12c1c	g.chr12:43072603delT								PRICKLE1 (89031 upstream) : ADAMTS20 (675410 downstream)																							AGAACTCTGCttttttttttt	0.413													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	12	132619230	132619231	+	IGR	INS	-	C	C	rs67501323		TCGA-EM-A3O3-01A-11D-A21Z-08	TCGA-EM-A3O3-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	cdb360bf-44b7-4550-80df-f34bcddbcb0c	69ba99c4-bd56-4c2c-aeab-a4bc4fb12c1c	g.chr12:132619230_132619231insC								EP400NL (19146 upstream) : DDX51 (1911 downstream)																							TCCTCCCACCTCCCGAGTGTGC	0.728													3	3	---	---	---	---					
TARSL2	123283	broad.mit.edu	37	15	102264807	102264811	+	5'Flank	DEL	GGGGC	-	-	rs10533695		TCGA-EM-A3O3-01A-11D-A21Z-08	TCGA-EM-A3O3-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	cdb360bf-44b7-4550-80df-f34bcddbcb0c	69ba99c4-bd56-4c2c-aeab-a4bc4fb12c1c	g.chr15:102264807_102264811delGGGGC	uc002bxm.2	-						TARSL2_uc010usi.1_5'Flank	NM_152334	NP_689547	A2RTX5	SYTC2_HUMAN	threonyl-tRNA synthetase-like 2						threonyl-tRNA aminoacylation	cytoplasm	ATP binding|threonine-tRNA ligase activity			ovary(2)	2	Lung NSC(78;0.000991)|all_lung(78;0.00128)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.000268)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			ATACCCTGCAggggcggggcggggc	0.410													4	6	---	---	---	---					
PRR25	388199	broad.mit.edu	37	16	863356	863372	+	Frame_Shift_Del	DEL	GGACGCCGGACCGACAC	-	-	rs113623365		TCGA-EM-A3O3-01A-11D-A21Z-08	TCGA-EM-A3O3-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	cdb360bf-44b7-4550-80df-f34bcddbcb0c	69ba99c4-bd56-4c2c-aeab-a4bc4fb12c1c	g.chr16:863356_863372delGGACGCCGGACCGACAC	uc010uut.1	+	3	704_720	c.704_720delGGACGCCGGACCGACAC	c.(703-720)AGGACGCCGGACCGACACfs	p.R235fs		NM_001013638	NP_001013660	Q96S07	PRR25_HUMAN	proline rich 25	235_240										large_intestine(1)	1						GGACCGGCAAGGACGCCGGACCGACACGGCCTCCCCA	0.714													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	221311230	221311234	+	IGR	DEL	CTCTT	-	-	rs73087736	by1000genomes	TCGA-EM-A3O3-01A-11D-A21Z-08	TCGA-EM-A3O3-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	cdb360bf-44b7-4550-80df-f34bcddbcb0c	69ba99c4-bd56-4c2c-aeab-a4bc4fb12c1c	g.chr2:221311230_221311234delCTCTT								SLC4A3 (804529 upstream) : EPHA4 (971515 downstream)																							ccctccttccctctttccccacttc	0.054													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	20	62027276	62027277	+	5'Flank	INS	-	G	G			TCGA-EM-A3O3-01A-11D-A21Z-08	TCGA-EM-A3O3-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	cdb360bf-44b7-4550-80df-f34bcddbcb0c	69ba99c4-bd56-4c2c-aeab-a4bc4fb12c1c	g.chr20:62027276_62027277insG	uc002yew.1	-											Homo sapiens cDNA FLJ31705 fis, clone NT2RI2006183, weakly similar to Proline-rich protein M14 precursor.																		GGCCCAGTGGAGGGGAGGGGCT	0.708													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	3	194712076	194712081	+	IGR	DEL	CTCCTA	-	-			TCGA-EM-A3O3-01A-11D-A21Z-08	TCGA-EM-A3O3-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	cdb360bf-44b7-4550-80df-f34bcddbcb0c	69ba99c4-bd56-4c2c-aeab-a4bc4fb12c1c	g.chr3:194712076_194712081delCTCCTA								FAM43A (302312 upstream) : C3orf21 (76934 downstream)																							cctcttcctcctcctactcctcttcc	0.087													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	12514213	12514236	+	IGR	DEL	CACACACACACACACACACACGCG	-	-	rs145031469	by1000genomes	TCGA-EM-A3O3-01A-11D-A21Z-08	TCGA-EM-A3O3-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	cdb360bf-44b7-4550-80df-f34bcddbcb0c	69ba99c4-bd56-4c2c-aeab-a4bc4fb12c1c	g.chr6:12514213_12514236delCACACACACACACACACACACGCG								EDN1 (216787 upstream) : PHACTR1 (202652 downstream)																							cacacacacacacacacacacacacacacacgcgcacacacaca	0.308													3	4	---	---	---	---					
STK19	8859	broad.mit.edu	37	6	31939825	31939826	+	Frame_Shift_Ins	INS	-	G	G			TCGA-EM-A3O3-01A-11D-A21Z-08	TCGA-EM-A3O3-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	cdb360bf-44b7-4550-80df-f34bcddbcb0c	69ba99c4-bd56-4c2c-aeab-a4bc4fb12c1c	g.chr6:31939825_31939826insG	uc003nyv.2	+	1	180_181	c.52_53insG	c.(52-54)CGGfs	p.R18fs	DOM3Z_uc003nyo.1_5'UTR|DOM3Z_uc003nyp.1_5'UTR|DOM3Z_uc003nyq.1_5'UTR|DOM3Z_uc003nyr.1_5'UTR|DOM3Z_uc003nys.1_5'Flank|DOM3Z_uc010jtl.1_5'UTR|STK19_uc003nyt.2_5'UTR|DOM3Z_uc003nyu.1_5'UTR|STK19_uc011dow.1_Frame_Shift_Ins_p.R18fs|STK19_uc011dox.1_5'UTR|STK19_uc003nyw.2_Frame_Shift_Ins_p.R18fs|STK19_uc010jtn.1_5'Flank	NM_032454	NP_115830	P49842	STK19_HUMAN	serine/threonine kinase 19 isoform 2	18						nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			skin(4)	4						GCGACAGTGGCGGGCAAACCCC	0.634													11	201	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	160131788	160131788	+	IGR	DEL	T	-	-			TCGA-EM-A3O3-01A-11D-A21Z-08	TCGA-EM-A3O3-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	cdb360bf-44b7-4550-80df-f34bcddbcb0c	69ba99c4-bd56-4c2c-aeab-a4bc4fb12c1c	g.chr6:160131788delT								SOD2 (17435 upstream) : WTAP (16341 downstream)																							ccaccactcatactgctctga	0.100													7	215	---	---	---	---					
MLLT4	4301	broad.mit.edu	37	6	168227187	168227189	+	5'Flank	DEL	CAT	-	-			TCGA-EM-A3O3-01A-11D-A21Z-08	TCGA-EM-A3O3-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	cdb360bf-44b7-4550-80df-f34bcddbcb0c	69ba99c4-bd56-4c2c-aeab-a4bc4fb12c1c	g.chr6:168227187_168227189delCAT	uc003qwd.2	+						MLLT4_uc003qwb.1_5'Flank|MLLT4_uc003qwc.1_5'Flank|C6orf124_uc003qwa.2_RNA	NM_001040001	NP_001035090	P55196	AFAD_HUMAN	myeloid/lymphoid or mixed-lineage leukemia						adherens junction organization|cell adhesion|cell junction assembly|cell-cell signaling|signal transduction	adherens junction|cell-cell junction|cytosol|nucleus	protein C-terminus binding			ovary(2)|lung(1)|kidney(1)|central_nervous_system(1)	5		Breast(66;1.07e-05)|Ovarian(120;0.024)		Epithelial(4;2.38e-32)|OV - Ovarian serous cystadenocarcinoma(33;9.99e-23)|BRCA - Breast invasive adenocarcinoma(4;1.2e-11)|GBM - Glioblastoma multiforme(31;0.00117)		CCATCGGACCCATCACCGCCCGT	0.680			T	MLL	AL								8	238	---	---	---	---					
OCM	654231	broad.mit.edu	37	7	5920406	5920406	+	5'Flank	DEL	T	-	-	rs10235465		TCGA-EM-A3O3-01A-11D-A21Z-08	TCGA-EM-A3O3-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	cdb360bf-44b7-4550-80df-f34bcddbcb0c	69ba99c4-bd56-4c2c-aeab-a4bc4fb12c1c	g.chr7:5920406delT	uc003spe.3	+							NM_001097622	NP_001091091	P0CE72	ONCO_HUMAN	oncomodulin								calcium ion binding				0		Ovarian(82;0.0694)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0978)|OV - Ovarian serous cystadenocarcinoma(56;2.11e-14)		aaaaaaaaaaTAATCTAGACA	0.229													4	4	---	---	---	---					
UBN2	254048	broad.mit.edu	37	7	138968642	138968642	+	Frame_Shift_Del	DEL	C	-	-			TCGA-EM-A3O3-01A-11D-A21Z-08	TCGA-EM-A3O3-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	cdb360bf-44b7-4550-80df-f34bcddbcb0c	69ba99c4-bd56-4c2c-aeab-a4bc4fb12c1c	g.chr7:138968642delC	uc011kqr.1	+	15	2991	c.2991delC	c.(2989-2991)CACfs	p.H997fs		NM_173569	NP_775840	Q6ZU65	UBN2_HUMAN	ubinuclein 2	997	Ser-rich.									ovary(1)|skin(1)	2						AAGGGTCCCACCCCCTGGTTT	0.493													22	45	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	39817161	39817161	+	IGR	DEL	A	-	-			TCGA-EM-A3O3-01A-11D-A21Z-08	TCGA-EM-A3O3-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	cdb360bf-44b7-4550-80df-f34bcddbcb0c	69ba99c4-bd56-4c2c-aeab-a4bc4fb12c1c	g.chr9:39817161delA								LOC653501 (308273 upstream) : FAM74A1 (83039 downstream)																							TACCGATAATAAAAAAAAAAA	0.388													2	4	---	---	---	---					
