Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
SCMH1	22955	broad.mit.edu	37	1	41582675	41582675	+	Silent	SNP	C	T	T			TCGA-ET-A25I-01A-11D-A16O-08	TCGA-ET-A25I-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	69fbd819-2f6b-4fd4-86dd-f9370cbbcd95	010ad109-f038-42e6-9efb-a24f5c53ea11	g.chr1:41582675C>T	uc001cgo.2	-	7	701	c.390G>A	c.(388-390)CGG>CGA	p.R130R	SCMH1_uc010ojr.1_Intron|SCMH1_uc001cgp.2_Silent_p.R69R|SCMH1_uc001cgr.2_Silent_p.R69R|SCMH1_uc001cgs.2_Silent_p.R140R|SCMH1_uc001cgt.2_Silent_p.R69R|SCMH1_uc001cgq.2_Silent_p.R83R|SCMH1_uc010ojs.1_RNA	NM_001031694	NP_001026864	Q96GD3	SCMH1_HUMAN	sex comb on midleg 1 isoform 1	130					anatomical structure morphogenesis|gene silencing|multicellular organismal development|negative regulation of transcription, DNA-dependent		DNA binding|sequence-specific DNA binding transcription factor activity				0	Ovarian(52;0.00769)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)|Breast(333;0.162)	Myeloproliferative disorder(586;0.0393)				ACGCATTCAGCCGAAATCCTG	0.358000													3	45	---	---	---	---	0	0	0.004672	0	0
NRAS	4893	broad.mit.edu	37	1	115256530	115256530	+	Missense_Mutation	SNP	G	T	T	rs121913254		TCGA-ET-A25I-01A-11D-A16O-08	TCGA-ET-A25I-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	69fbd819-2f6b-4fd4-86dd-f9370cbbcd95	010ad109-f038-42e6-9efb-a24f5c53ea11	g.chr1:115256530G>T	uc009wgu.2	-	3	435	c.181C>A	c.(181-183)CAA>AAA	p.Q61K		NM_002524	NP_002515	P01111	RASN_HUMAN	neuroblastoma RAS viral (v-ras) oncogene homolog	61	GTP.		Q -> K (in neuroblastoma cell).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	Golgi membrane|plasma membrane	GTP binding|GTPase activity	p.Q61R(757)|p.Q61K(537)|p.Q61L(147)|p.Q61H(95)|p.Q61P(21)|p.Q61E(9)|p.Q61?(4)|p.Q61Q(3)|p.Q61_E62>HK(1)		haematopoietic_and_lymphoid_tissue(1008)|skin(956)|thyroid(334)|large_intestine(62)|NS(60)|soft_tissue(32)|lung(31)|upper_aerodigestive_tract(25)|urinary_tract(12)|liver(10)|adrenal_gland(9)|autonomic_ganglia(8)|testis(8)|central_nervous_system(8)|prostate(8)|breast(7)|biliary_tract(6)|ovary(6)|stomach(5)|pancreas(5)|endometrium(2)|kidney(2)|cervix(2)|eye(1)	2607	all_epithelial(7;5.11e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		TACTCTTCTTGTCCAGCTGTA	0.458000	Q61K(HT1080_SOFT_TISSUE)|Q61K(OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61K(SKNAS_AUTONOMIC_GANGLIA)|Q61K(HCC15_LUNG)|Q61K(TYKNU_OVARY)|Q61K(SKNSH_AUTONOMIC_GANGLIA)|Q61K(HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61K(NCIH2087_LUNG)|Q61K(CHP212_AUTONOMIC_GANGLIA)|Q61K(HS944T_SKIN)|Q61K(M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61K(HS936T_SKIN)|Q61K(NCIH1299_LUNG)	50	Mis		melanoma|MM|AML|thyroid				Noonan_syndrome	TSP Lung(23;0.16)|Multiple Myeloma(1;<1E-6)			56	138	---	---	---	---	1.13205e-32	1.64329e-32	0.014410	1	0
LAMC1	3915	broad.mit.edu	37	1	183072526	183072526	+	Missense_Mutation	SNP	C	G	G			TCGA-ET-A25I-01A-11D-A16O-08	TCGA-ET-A25I-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	69fbd819-2f6b-4fd4-86dd-f9370cbbcd95	010ad109-f038-42e6-9efb-a24f5c53ea11	g.chr1:183072526C>G	uc001gpy.3	+	2	739	c.482C>G	c.(481-483)GCC>GGC	p.A161G	LAMC1_uc001gpx.2_Missense_Mutation_p.A161G	NM_002293	NP_002284	P11047	LAMC1_HUMAN	laminin, gamma 1 precursor	161	Laminin N-terminal.				axon guidance|cell migration|endoderm development|extracellular matrix disassembly|hemidesmosome assembly|positive regulation of epithelial cell proliferation|protein complex assembly|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-11 complex	extracellular matrix structural constituent			ovary(3)|large_intestine(1)|kidney(1)	5					Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GAGAGCTTTGCCATTTACAAG	0.512000													61	104	---	---	---	---	0	0	0.014410	0	0
AGAP2	116986	broad.mit.edu	37	12	58131103	58131103	+	Silent	SNP	G	A	A			TCGA-ET-A25I-01A-11D-A16O-08	TCGA-ET-A25I-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	69fbd819-2f6b-4fd4-86dd-f9370cbbcd95	010ad109-f038-42e6-9efb-a24f5c53ea11	g.chr12:58131103G>A	uc001spq.2	-	1	927	c.927C>T	c.(925-927)TCC>TCT	p.S309S	AGAP2_uc001spp.2_Silent_p.S309S|AGAP2_uc001spr.2_Intron	NM_001122772	NP_001116244	Q99490	AGAP2_HUMAN	centaurin, gamma 1 isoform PIKE-L	309	Interaction with PLCG1 (By similarity).				axon guidance|negative regulation of neuron apoptosis|negative regulation of protein catabolic process|protein transport|regulation of ARF GTPase activity|small GTPase mediated signal transduction	mitochondrion|nucleolus	ARF GTPase activator activity|GTP binding|zinc ion binding			central_nervous_system(3)|breast(2)	5						GGGGCTGCGCGGAAGCAGCGG	0.687000													3	58	---	---	---	---	0	0	0.004672	0	0
LOC284232	284232	broad.mit.edu	37	13	19415849	19415849	+	RNA	SNP	T	A	A			TCGA-ET-A25I-01A-11D-A16O-08	TCGA-ET-A25I-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	69fbd819-2f6b-4fd4-86dd-f9370cbbcd95	010ad109-f038-42e6-9efb-a24f5c53ea11	g.chr13:19415849T>A	uc010tcj.1	-	1		c.30261A>T				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						ATTTCCTTCTTTGACCtttaa	0.249000													3	16	---	---	---	---	0	0	0.004672	0	0
C14orf49	161176	broad.mit.edu	37	14	95906371	95906371	+	Missense_Mutation	SNP	G	C	C			TCGA-ET-A25I-01A-11D-A16O-08	TCGA-ET-A25I-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	69fbd819-2f6b-4fd4-86dd-f9370cbbcd95	010ad109-f038-42e6-9efb-a24f5c53ea11	g.chr14:95906371G>C	uc001yei.3	-	11	1968	c.1953C>G	c.(1951-1953)TGC>TGG	p.C651W	C14orf49_uc010avi.2_Missense_Mutation_p.C651W	NM_152592	NP_689805	Q6ZMZ3	SYNE3_HUMAN	nesprin-3	651	Spectrin 2.|Cytoplasmic (Potential).				cytoskeletal anchoring at nuclear membrane	integral to membrane|nuclear outer membrane|SUN-KASH complex	actin binding			central_nervous_system(1)	1		all_cancers(154;0.0937)		COAD - Colon adenocarcinoma(157;0.245)		GGCTGAAGGTGCAGTGCTCCT	0.682000													40	85	---	---	---	---	0	0	0.010771	0	0
LOC645752	645752	broad.mit.edu	37	15	78211648	78211648	+	Missense_Mutation	SNP	A	G	G			TCGA-ET-A25I-01A-11D-A16O-08	TCGA-ET-A25I-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	69fbd819-2f6b-4fd4-86dd-f9370cbbcd95	010ad109-f038-42e6-9efb-a24f5c53ea11	g.chr15:78211648A>G	uc010bky.2	-	11	883	c.119T>C	c.(118-120)CTA>CCA	p.L40P		NR_027024				SubName: Full=GOLGA6 protein; Flags: Fragment;												0						CGCCAGGGATAGGGGCTCAGC	0.522000													3	64	---	---	---	---	0	0	0.014758	0	0
GOLGA6L10	647042	broad.mit.edu	37	15	83014132	83014132	+	Missense_Mutation	SNP	C	G	G			TCGA-ET-A25I-01A-11D-A16O-08	TCGA-ET-A25I-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	69fbd819-2f6b-4fd4-86dd-f9370cbbcd95	010ad109-f038-42e6-9efb-a24f5c53ea11	g.chr15:83014132C>G	uc010uny.1	-	6	513	c.415G>C	c.(415-417)GAG>CAG	p.E139Q	GOLGA6L10_uc010unt.1_RNA|uc002bhl.2_Intron|uc002bhm.2_Intron|GOLGA6L10_uc002bia.1_5'Flank	NM_198181	NP_937824	A6NI86	GG6LA_HUMAN	golgi autoantigen, golgin subfamily a, 6D-like	151											0						GCTGGGGGCTCTGGGGCCAGG	0.522000													4	5	---	---	---	---	0	0	0.009096	0	0
SMG1	23049	broad.mit.edu	37	16	18823096	18823096	+	Missense_Mutation	SNP	G	A	A			TCGA-ET-A25I-01A-11D-A16O-08	TCGA-ET-A25I-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	69fbd819-2f6b-4fd4-86dd-f9370cbbcd95	010ad109-f038-42e6-9efb-a24f5c53ea11	g.chr16:18823096G>A	uc002dfm.2	-	62	11258	c.10895C>T	c.(10894-10896)TCA>TTA	p.S3632L	SMG1_uc010bwb.2_Missense_Mutation_p.S3492L|SMG1_uc010bwa.2_Missense_Mutation_p.S2363L	NM_015092	NP_055907	Q96Q15	SMG1_HUMAN	PI-3-kinase-related kinase SMG-1	3632	FATC.				DNA repair|mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|peptidyl-serine phosphorylation|phosphatidylinositol phosphorylation|protein autophosphorylation	cytoplasm|nucleus	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			breast(5)|stomach(4)|lung(4)|kidney(2)|ovary(1)	16						TTCAGCAACTGACATCCTCCT	0.443000													13	345	---	---	---	---	0	0	0.016723	0	0
Unknown	0	broad.mit.edu	37	17	19091395	19091395	+	IGR	SNP	C	T	T			TCGA-ET-A25I-01A-11D-A16O-08	TCGA-ET-A25I-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	69fbd819-2f6b-4fd4-86dd-f9370cbbcd95	010ad109-f038-42e6-9efb-a24f5c53ea11	g.chr17:19091395C>T								GRAPL (29247 upstream) : EPN2 (49295 downstream)																							acgtgtagagcaccgaaaacc	0.095000													24	284	---	---	---	---	0	0	0.037714	0	0
UNC45B	146862	broad.mit.edu	37	17	33507620	33507620	+	Missense_Mutation	SNP	C	A	A			TCGA-ET-A25I-01A-11D-A16O-08	TCGA-ET-A25I-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	69fbd819-2f6b-4fd4-86dd-f9370cbbcd95	010ad109-f038-42e6-9efb-a24f5c53ea11	g.chr17:33507620C>A	uc002hja.2	+	18	2401	c.2304C>A	c.(2302-2304)AAC>AAA	p.N768K	UNC45B_uc002hjb.2_Missense_Mutation_p.N766K|UNC45B_uc002hjc.2_Missense_Mutation_p.N766K|UNC45B_uc010cto.2_Missense_Mutation_p.N687K	NM_173167	NP_775259	Q8IWX7	UN45B_HUMAN	cardiomyopathy associated 4 isoform 1	768	ARM 3.				cell differentiation|muscle organ development	cytosol	binding			ovary(3)|central_nervous_system(2)|breast(1)	6		Ovarian(249;0.17)				ACATCGAGAACTACATGTTTG	0.557000													30	63	---	---	---	---	7.01153e-11	9.56118e-11	0.034045	1	0
KRT35	3886	broad.mit.edu	37	17	39633418	39633418	+	Missense_Mutation	SNP	A	G	G			TCGA-ET-A25I-01A-11D-A16O-08	TCGA-ET-A25I-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	69fbd819-2f6b-4fd4-86dd-f9370cbbcd95	010ad109-f038-42e6-9efb-a24f5c53ea11	g.chr17:39633418A>G	uc002hws.2	-	7	1301	c.1258T>C	c.(1258-1260)TCC>CCC	p.S420P		NM_002280	NP_002271	Q92764	KRT35_HUMAN	keratin 35	420	Tail.				anatomical structure morphogenesis	intermediate filament	protein binding|structural molecule activity			ovary(1)|skin(1)	2		Breast(137;0.000286)				CATGACTTGGAGGGTGAGTAG	0.542000													3	65	---	---	---	---	0	0	0.004672	0	0
TBC1D3P2	440452	broad.mit.edu	37	17	60342186	60342186	+	RNA	SNP	T	C	C	rs79096325		TCGA-ET-A25I-01A-11D-A16O-08	TCGA-ET-A25I-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	69fbd819-2f6b-4fd4-86dd-f9370cbbcd95	010ad109-f038-42e6-9efb-a24f5c53ea11	g.chr17:60342186T>C	uc010woz.1	-	14		c.1943A>G				NR_027486				Homo sapiens cDNA FLJ60189 complete cds, highly similar to TBC1 domain family member 3.												0						GCTGGGGGTGTTGGGAGGGGC	0.493000													3	12	---	---	---	---	0	0	0.004672	0	0
TBC1D3P2	440452	broad.mit.edu	37	17	60342197	60342197	+	RNA	SNP	T	C	C	rs76635225		TCGA-ET-A25I-01A-11D-A16O-08	TCGA-ET-A25I-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	69fbd819-2f6b-4fd4-86dd-f9370cbbcd95	010ad109-f038-42e6-9efb-a24f5c53ea11	g.chr17:60342197T>C	uc010woz.1	-	14		c.1932A>G				NR_027486				Homo sapiens cDNA FLJ60189 complete cds, highly similar to TBC1 domain family member 3.												0						TGGGAGGGGCTGGGCATGGTT	0.488000													3	19	---	---	---	---	0	0	0.004672	0	0
C18orf10	25941	broad.mit.edu	37	18	34376837	34376837	+	Silent	SNP	T	G	G			TCGA-ET-A25I-01A-11D-A16O-08	TCGA-ET-A25I-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	69fbd819-2f6b-4fd4-86dd-f9370cbbcd95	010ad109-f038-42e6-9efb-a24f5c53ea11	g.chr18:34376837T>G	uc002kzw.1	-	7	1262	c.834A>C	c.(832-834)GGA>GGC	p.G278G	C18orf10_uc002kzv.1_Intron|C18orf10_uc010xci.1_Silent_p.G243G|C18orf10_uc002kzx.1_Silent_p.G235G	NM_015476	NP_056291	Q68CL5	TPGS2_HUMAN	tubulin polyglutamylase complex subunit 2	278						cytoplasm|microtubule				skin(1)	1						GACCGGAGGGTCCTGAGGGCC	0.562000													8	66	---	---	---	---	0	0	0.013537	0	0
TET3	200424	broad.mit.edu	37	2	74274199	74274199	+	Silent	SNP	T	C	C			TCGA-ET-A25I-01A-11D-A16O-08	TCGA-ET-A25I-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	69fbd819-2f6b-4fd4-86dd-f9370cbbcd95	010ad109-f038-42e6-9efb-a24f5c53ea11	g.chr2:74274199T>C	uc002skb.3	+	1	750	c.750T>C	c.(748-750)CCT>CCC	p.P250P	TET3_uc010fez.1_Silent_p.P250P	NM_144993	NP_659430	O43151	TET3_HUMAN	tet oncogene family member 3	250							metal ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen				0						GCCCCCTTCCTGAGGCCTTGT	0.602000													3	64	---	---	---	---	0	0	0.004672	0	0
CPNE1	8904	broad.mit.edu	37	20	34218857	34218857	+	Missense_Mutation	SNP	A	G	G			TCGA-ET-A25I-01A-11D-A16O-08	TCGA-ET-A25I-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	69fbd819-2f6b-4fd4-86dd-f9370cbbcd95	010ad109-f038-42e6-9efb-a24f5c53ea11	g.chr20:34218857A>G	uc002xdf.2	-	13	1324	c.961T>C	c.(961-963)TGG>CGG	p.W321R	CPNE1_uc002xdc.2_5'UTR|CPNE1_uc010zvj.1_Missense_Mutation_p.W326R|CPNE1_uc002xde.2_Missense_Mutation_p.W297R|CPNE1_uc002xdg.2_Missense_Mutation_p.W321R|CPNE1_uc010gfi.2_RNA|CPNE1_uc010gfj.2_RNA|CPNE1_uc002xdh.2_Missense_Mutation_p.W321R|CPNE1_uc002xdi.2_Missense_Mutation_p.W321R|CPNE1_uc002xdj.2_Missense_Mutation_p.W321R|CPNE1_uc002xdk.2_Missense_Mutation_p.W321R|CPNE1_uc002xdl.2_Missense_Mutation_p.W321R|CPNE1_uc002xdm.2_Missense_Mutation_p.W321R|CPNE1_uc010gfk.1_3'UTR	NM_152931	NP_690908	Q99829	CPNE1_HUMAN	copine I isoform a	321	VWFA.				lipid metabolic process|vesicle-mediated transport		calcium-dependent phospholipid binding|phosphatidylserine binding|transporter activity			upper_aerodigestive_tract(1)	1	Lung NSC(9;0.0053)|all_lung(11;0.00785)		BRCA - Breast invasive adenocarcinoma(18;0.00953)			CCCACACTCCACAGTGCCATC	0.572000													4	88	---	---	---	---	0	0	0.021553	0	0
PWP2	5822	broad.mit.edu	37	21	45542148	45542148	+	Missense_Mutation	SNP	T	A	A			TCGA-ET-A25I-01A-11D-A16O-08	TCGA-ET-A25I-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	69fbd819-2f6b-4fd4-86dd-f9370cbbcd95	010ad109-f038-42e6-9efb-a24f5c53ea11	g.chr21:45542148T>A	uc002zeb.2	+	14	1817	c.1727T>A	c.(1726-1728)GTG>GAG	p.V576E		NM_005049	NP_005040	Q15269	PWP2_HUMAN	PWP2 periodic tryptophan protein homolog	576	WD 12.					cytoplasm|nucleolus	signal transducer activity			pancreas(1)	1				STAD - Stomach adenocarcinoma(101;0.172)|Colorectal(79;0.2)		GAGAACGCGGTGCAGACGGGC	0.582000													18	100	---	---	---	---	0	0	0.007413	0	0
GAB4	128954	broad.mit.edu	37	22	17472966	17472966	+	Missense_Mutation	SNP	C	T	T			TCGA-ET-A25I-01A-11D-A16O-08	TCGA-ET-A25I-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	69fbd819-2f6b-4fd4-86dd-f9370cbbcd95	010ad109-f038-42e6-9efb-a24f5c53ea11	g.chr22:17472966C>T	uc002zlw.2	-	2	383	c.275G>A	c.(274-276)CGC>CAC	p.R92H	GAB4_uc010gqs.1_Missense_Mutation_p.R92H	NM_001037814	NP_001032903	Q2WGN9	GAB4_HUMAN	GRB2-associated binding protein family, member	92	PH.									large_intestine(1)|ovary(1)	2		all_epithelial(15;0.112)|Lung NSC(13;0.248)				GTTGATGGTGCGCAGGGGCTT	0.502000													18	244	---	---	---	---	0	0	0.007413	0	0
PCDHA6	56142	broad.mit.edu	37	5	140209539	140209539	+	Silent	SNP	G	A	A			TCGA-ET-A25I-01A-11D-A16O-08	TCGA-ET-A25I-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	69fbd819-2f6b-4fd4-86dd-f9370cbbcd95	010ad109-f038-42e6-9efb-a24f5c53ea11	g.chr5:140209539G>A	uc003lho.2	+	1	1890	c.1863G>A	c.(1861-1863)CCG>CCA	p.P621P	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc011dab.1_Silent_p.P621P	NM_018909	NP_061732	Q9UN73	PCDA6_HUMAN	protocadherin alpha 6 isoform 1 precursor	621	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			haematopoietic_and_lymphoid_tissue(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTCGCTTCCCGTTTCGCGTGG	0.657000													32	55	---	---	---	---	0	0	0.019004	0	0
CCDC129	223075	broad.mit.edu	37	7	31683024	31683024	+	Missense_Mutation	SNP	G	T	T			TCGA-ET-A25I-01A-11D-A16O-08	TCGA-ET-A25I-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	69fbd819-2f6b-4fd4-86dd-f9370cbbcd95	010ad109-f038-42e6-9efb-a24f5c53ea11	g.chr7:31683024G>T	uc003tcj.1	+	11	3033	c.2040G>T	c.(2038-2040)AGG>AGT	p.R680S	CCDC129_uc011kad.1_Missense_Mutation_p.R690S|CCDC129_uc003tci.1_Missense_Mutation_p.R531S|CCDC129_uc011kae.1_Missense_Mutation_p.R706S|CCDC129_uc003tck.1_Missense_Mutation_p.R588S	NM_194300	NP_919276	Q6ZRS4	CC129_HUMAN	coiled-coil domain containing 129	680											0						TGAAGTCAAGGTCTGGTACTT	0.483000													25	29	---	---	---	---	6.32553e-13	8.89528e-13	0.024334	1	0
ZFHX4	79776	broad.mit.edu	37	8	77768323	77768323	+	Missense_Mutation	SNP	C	T	T			TCGA-ET-A25I-01A-11D-A16O-08	TCGA-ET-A25I-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	69fbd819-2f6b-4fd4-86dd-f9370cbbcd95	010ad109-f038-42e6-9efb-a24f5c53ea11	g.chr8:77768323C>T	uc003yav.2	+	10	9418	c.9031C>T	c.(9031-9033)CGG>TGG	p.R3011W	ZFHX4_uc003yau.1_Missense_Mutation_p.R3056W|ZFHX4_uc003yaw.1_Missense_Mutation_p.R3011W	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	3011						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			GACCACGGTTCGGCAGCTGAT	0.507000										HNSCC(33;0.089)			6	117	---	---	---	---	0	0	0.021553	0	0
TTF1	7270	broad.mit.edu	37	9	135275452	135275452	+	Silent	SNP	A	G	G			TCGA-ET-A25I-01A-11D-A16O-08	TCGA-ET-A25I-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	69fbd819-2f6b-4fd4-86dd-f9370cbbcd95	010ad109-f038-42e6-9efb-a24f5c53ea11	g.chr9:135275452A>G	uc004cbl.2	-	3	1613	c.1561T>C	c.(1561-1563)TTG>CTG	p.L521L	TTF1_uc011mcp.1_RNA|TTF1_uc004cbm.2_Silent_p.L6L	NM_007344	NP_031370	Q15361	TTF1_HUMAN	transcription termination factor, RNA polymerase	521					negative regulation of DNA replication|regulation of transcription, DNA-dependent|termination of RNA polymerase I transcription	nucleolus|nucleoplasm	DNA binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4		Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;4.25e-06)|Epithelial(140;9.09e-05)		AACCGTTCCAAGTCGTCCCGG	0.473000													54	101	---	---	---	---	0	0	0.014410	0	0
NHS	4810	broad.mit.edu	37	X	17743871	17743871	+	Missense_Mutation	SNP	C	T	T			TCGA-ET-A25I-01A-11D-A16O-08	TCGA-ET-A25I-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	69fbd819-2f6b-4fd4-86dd-f9370cbbcd95	010ad109-f038-42e6-9efb-a24f5c53ea11	g.chrX:17743871C>T	uc004cxx.2	+	6	1920	c.1582C>T	c.(1582-1584)CCA>TCA	p.P528S	NHS_uc011mix.1_Missense_Mutation_p.P549S|NHS_uc004cxy.2_Missense_Mutation_p.P372S|NHS_uc004cxz.2_Missense_Mutation_p.P351S|NHS_uc004cya.2_Missense_Mutation_p.P251S	NM_198270	NP_938011	Q6T4R5	NHS_HUMAN	Nance-Horan syndrome protein isoform 1	528						nucleus				skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	Hepatocellular(33;0.183)					CAGTGAGGCTCCAAGCAGCCC	0.542000													26	60	---	---	---	---	0	0	0.030593	0	0
PLXNB3	5365	broad.mit.edu	37	X	153033718	153033718	+	Silent	SNP	G	A	A			TCGA-ET-A25I-01A-11D-A16O-08	TCGA-ET-A25I-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	69fbd819-2f6b-4fd4-86dd-f9370cbbcd95	010ad109-f038-42e6-9efb-a24f5c53ea11	g.chrX:153033718G>A	uc004fii.2	+	4	1275	c.1101G>A	c.(1099-1101)TCG>TCA	p.S367S	PLXNB3_uc011mzb.1_Intron|PLXNB3_uc011mzc.1_Silent_p.S49S|PLXNB3_uc010nuk.2_Silent_p.S390S|PLXNB3_uc011mzd.1_Silent_p.S6S	NM_005393	NP_005384	Q9ULL4	PLXB3_HUMAN	plexin B3 isoform 1	367	Extracellular (Potential).|Sema.				axon guidance	integral to membrane|intracellular|plasma membrane	protein binding|receptor activity			lung(1)	1	all_hematologic(71;4.25e-06)|all_lung(58;3.83e-05)|Lung NSC(58;5.54e-05)|Acute lymphoblastic leukemia(192;6.56e-05)					CCCCCGAGTCGTACCCCTGTG	0.687000													37	51	---	---	---	---	0	0	0.030466	0	0
Unknown	0	broad.mit.edu	37	18	65042571	65042572	+	IGR	INS	-	AA	AA	rs150098817		TCGA-ET-A25I-01A-11D-A16O-08	TCGA-ET-A25I-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	69fbd819-2f6b-4fd4-86dd-f9370cbbcd95	010ad109-f038-42e6-9efb-a24f5c53ea11	g.chr18:65042571_65042572insAA								CDH19 (771355 upstream) : DSEL (131247 downstream)																							ATATTACCAGTAAAAAAAAAAA	0.337													4	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	22	20151656	20151657	+	IGR	INS	-	ACC	ACC	rs141600104		TCGA-ET-A25I-01A-11D-A16O-08	TCGA-ET-A25I-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	69fbd819-2f6b-4fd4-86dd-f9370cbbcd95	010ad109-f038-42e6-9efb-a24f5c53ea11	g.chr22:20151656_20151657insACC								ZDHHC8 (16127 upstream) : LOC150197 (42198 downstream)																							ccaccatcactaccaccaccac	0.000													2	4	---	---	---	---					
URGCP	55665	broad.mit.edu	37	7	43917655	43917663	+	In_Frame_Del	DEL	ACACTCCTC	-	-			TCGA-ET-A25I-01A-11D-A16O-08	TCGA-ET-A25I-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	69fbd819-2f6b-4fd4-86dd-f9370cbbcd95	010ad109-f038-42e6-9efb-a24f5c53ea11	g.chr7:43917655_43917663delACACTCCTC	uc003tiw.2	-	6	1456_1464	c.1399_1407delGAGGAGTGT	c.(1399-1407)GAGGAGTGTdel	p.EEC467del	URGCP_uc003tiu.2_In_Frame_Del_p.EEC424del|URGCP_uc003tiv.2_In_Frame_Del_p.EEC392del|URGCP_uc003tix.2_In_Frame_Del_p.EEC458del|URGCP_uc003tiy.2_In_Frame_Del_p.EEC424del|URGCP_uc003tiz.2_In_Frame_Del_p.EEC424del|URGCP_uc011kbj.1_In_Frame_Del_p.EEC424del	NM_001077663	NP_001071131	Q8TCY9	URGCP_HUMAN	up-regulated gene 4 isoform 3	467_469					cell cycle	centrosome|nucleus	GTP binding			ovary(2)|liver(1)|skin(1)	4						TCGCTTTCTGACACTCCTCACAGTCCTCG	0.589													13	220	---	---	---	---					
TG	7038	broad.mit.edu	37	8	133900513	133900517	+	Frame_Shift_Del	DEL	ATTCA	-	-			TCGA-ET-A25I-01A-11D-A16O-08	TCGA-ET-A25I-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	69fbd819-2f6b-4fd4-86dd-f9370cbbcd95	010ad109-f038-42e6-9efb-a24f5c53ea11	g.chr8:133900513_133900517delATTCA	uc003ytw.2	+	10	2502_2506	c.2461_2465delATTCA	c.(2461-2466)ATTCAAfs	p.I821fs		NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	821_822	Thyroglobulin type-1 7.				hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		CAGTCTCTTTATTCAAAGTCTGTAT	0.527													20	41	---	---	---	---					
Unknown	0	broad.mit.edu	37	8	142953416	142953418	+	IGR	DEL	GGT	-	-			TCGA-ET-A25I-01A-11D-A16O-08	TCGA-ET-A25I-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	69fbd819-2f6b-4fd4-86dd-f9370cbbcd95	010ad109-f038-42e6-9efb-a24f5c53ea11	g.chr8:142953416_142953418delGGT								MIR1302-7 (85742 upstream) : NCRNA00051 (326299 downstream)																							gtcaggtgagggtggtggtggtg	0.000													3	4	---	---	---	---					
