Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
ESPNP	284729	broad.mit.edu	37	1	17023143	17023143	+	Missense_Mutation	SNP	C	T	T	rs559507	by1000genomes	TCGA-ET-A3DU-01A-11D-A19J-08	TCGA-ET-A3DU-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	70168ed4-c985-46b2-8c9a-c0510fef5e77	f2a70c64-a751-4ecd-9361-59710dcc20d3	g.chr1:17023143C>T	uc001azn.1	-	10	1721	c.1607G>A	c.(1606-1608)CGG>CAG	p.R536Q		NR_026567				RecName: Full=Espin; AltName: Full=Ectoplasmic specialization protein; AltName: Full=Autosomal recessive deafness type 36 protein;												0						TGTGGGGCTCCGGACTGGTAA	0.692000													7	25	---	---	---	---	0	0	0.047766	0	0
CACHD1	57685	broad.mit.edu	37	1	65117914	65117914	+	Silent	SNP	G	A	A			TCGA-ET-A3DU-01A-11D-A19J-08	TCGA-ET-A3DU-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	70168ed4-c985-46b2-8c9a-c0510fef5e77	f2a70c64-a751-4ecd-9361-59710dcc20d3	g.chr1:65117914G>A	uc001dbo.1	+	10	1413	c.1308G>A	c.(1306-1308)GTG>GTA	p.V436V	CACHD1_uc001dbp.1_Silent_p.V191V|CACHD1_uc001dbq.1_Silent_p.V191V	NM_020925	NP_065976	Q5VU97	CAHD1_HUMAN	cache domain containing 1	487	Extracellular (Potential).|Cache 1.				calcium ion transport	integral to membrane				ovary(2)	2						GTGTGGACGTGAATCTGGCTT	0.368000													12	72	---	---	---	---	0	0	0.093190	0	0
NBPF10	100132406	broad.mit.edu	37	1	145368466	145368466	+	Missense_Mutation	SNP	G	A	A			TCGA-ET-A3DU-01A-11D-A19J-08	TCGA-ET-A3DU-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	70168ed4-c985-46b2-8c9a-c0510fef5e77	f2a70c64-a751-4ecd-9361-59710dcc20d3	g.chr1:145368466G>A	uc001end.3	+	86	10704	c.10669G>A	c.(10669-10671)GAA>AAA	p.E3557K	NBPF9_uc010oye.1_Missense_Mutation_p.E841K|NBPF10_uc001emp.3_Intron|NBPF10_uc010oyi.1_Missense_Mutation_p.E410K|NBPF10_uc010oyk.1_Missense_Mutation_p.E198K|NBPF10_uc010oyl.1_Missense_Mutation_p.E198K	NM_001039703	NP_001034792	A6NDV3	A6NDV3_HUMAN	hypothetical protein LOC100132406	3482											0	all_hematologic(923;0.032)			Colorectal(1306;1.36e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)		GATGGAAGTGGAAGAGCGTGA	0.468000													32	491	---	---	---	---	0	0	0.054565	0	0
TIPIN	54962	broad.mit.edu	37	15	66633685	66633685	+	Missense_Mutation	SNP	G	A	A			TCGA-ET-A3DU-01A-11D-A19J-08	TCGA-ET-A3DU-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	70168ed4-c985-46b2-8c9a-c0510fef5e77	f2a70c64-a751-4ecd-9361-59710dcc20d3	g.chr15:66633685G>A	uc002apr.2	-	7	571	c.485C>T	c.(484-486)GCG>GTG	p.A162V	TIPIN_uc010ujn.1_Missense_Mutation_p.A61V|TIPIN_uc010ujo.1_Missense_Mutation_p.A61V	NM_017858	NP_060328	Q9BVW5	TIPIN_HUMAN	TIMELESS interacting protein	162					cell division|DNA replication checkpoint|intra-S DNA damage checkpoint|mitosis|positive regulation of cell proliferation|regulation of DNA replication involved in S phase|replication fork protection	cytoplasm|nuclear chromatin	protein binding			ovary(1)	1						ATTATTCTCCGCAACTTCATC	0.363000													3	24	---	---	---	---	0	0	0.004672	0	0
NDUFB10	4716	broad.mit.edu	37	16	2011570	2011570	+	Silent	SNP	C	T	T			TCGA-ET-A3DU-01A-11D-A19J-08	TCGA-ET-A3DU-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	70168ed4-c985-46b2-8c9a-c0510fef5e77	f2a70c64-a751-4ecd-9361-59710dcc20d3	g.chr16:2011570C>T	uc002cni.2	+	3	451	c.342C>T	c.(340-342)AAC>AAT	p.N114N	NDUFB10_uc002cnj.2_Silent_p.N114N	NM_004548	NP_004539	O96000	NDUBA_HUMAN	NADH dehydrogenase (ubiquinone) 1 beta	114					mitochondrial electron transport, NADH to ubiquinone|transport	mitochondrial respiratory chain complex I	NADH dehydrogenase (ubiquinone) activity|protein binding				0					NADH(DB00157)	AAGGACAGAACTACCAGCAGA	0.557000													14	89	---	---	---	---	0	0	0.020292	0	0
KIF1C	10749	broad.mit.edu	37	17	4906130	4906130	+	Missense_Mutation	SNP	C	T	T			TCGA-ET-A3DU-01A-11D-A19J-08	TCGA-ET-A3DU-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	70168ed4-c985-46b2-8c9a-c0510fef5e77	f2a70c64-a751-4ecd-9361-59710dcc20d3	g.chr17:4906130C>T	uc002gan.1	+	8	1039	c.713C>T	c.(712-714)TCG>TTG	p.S238L		NM_006612	NP_006603	O43896	KIF1C_HUMAN	kinesin family member 1C	238	Kinesin-motor.				microtubule-based movement|retrograde vesicle-mediated transport, Golgi to ER	endoplasmic reticulum|Golgi apparatus|microtubule	ATP binding|microtubule motor activity			breast(2)	2						GGGCTGGACTCGGAGAAGGTG	0.632000													6	56	---	---	---	---	0	0	0.021553	0	0
FCGBP	8857	broad.mit.edu	37	19	40433640	40433640	+	Missense_Mutation	SNP	G	A	A			TCGA-ET-A3DU-01A-11D-A19J-08	TCGA-ET-A3DU-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	70168ed4-c985-46b2-8c9a-c0510fef5e77	f2a70c64-a751-4ecd-9361-59710dcc20d3	g.chr19:40433640G>A	uc002omp.3	-	2	637	c.629C>T	c.(628-630)TCG>TTG	p.S210L		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	210	IgGFc-binding.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			CTTTGACCCCGAGAGATCCAC	0.542000													9	75	---	---	---	---	0	0	0.069234	0	0
GGT8P	645367	broad.mit.edu	37	2	91969071	91969071	+	RNA	SNP	T	C	C	rs115299304	by1000genomes	TCGA-ET-A3DU-01A-11D-A19J-08	TCGA-ET-A3DU-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	70168ed4-c985-46b2-8c9a-c0510fef5e77	f2a70c64-a751-4ecd-9361-59710dcc20d3	g.chr2:91969071T>C	uc010fho.1	+	2		c.1402T>C				NR_003503				Homo sapiens cDNA FLJ31276 fis, clone KIDNE2006376, weakly similar to GAMMA-GLUTAMYLTRANSPEPTIDASE 1 PRECURSOR (EC 2.3.2.2).												0						GAGAGACTGATCCTGCTGCGG	0.602000													3	18	---	---	---	---	0	0	0.014758	0	0
GIGYF2	26058	broad.mit.edu	37	2	233710457	233710457	+	Silent	SNP	G	A	A			TCGA-ET-A3DU-01A-11D-A19J-08	TCGA-ET-A3DU-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	70168ed4-c985-46b2-8c9a-c0510fef5e77	f2a70c64-a751-4ecd-9361-59710dcc20d3	g.chr2:233710457G>A	uc002vti.3	+	28	3658	c.3321G>A	c.(3319-3321)GTG>GTA	p.V1107V	GIGYF2_uc002vtj.3_Silent_p.V1128V|GIGYF2_uc002vtk.3_Silent_p.V1107V|GIGYF2_uc002vth.3_Silent_p.V1101V|GIGYF2_uc010zmk.1_Intron|GIGYF2_uc002vtq.3_Silent_p.V440V	NM_015575	NP_056390	Q6Y7W6	PERQ2_HUMAN	GRB10 interacting GYF protein 2 isoform b	1107					cell death		protein binding			ovary(4)|central_nervous_system(3)	7		Breast(86;0.00279)|all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0271)|Lung NSC(271;0.0839)		Epithelial(121;7.37e-16)|BRCA - Breast invasive adenocarcinoma(100;0.000472)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Lung(119;0.0118)|GBM - Glioblastoma multiforme(43;0.0145)		CTGTAGGTGTGTCTAACCGGC	0.363000													4	75	---	---	---	---	0	0	0.014758	0	0
ZGPAT	84619	broad.mit.edu	37	20	62340073	62340073	+	Missense_Mutation	SNP	C	G	G			TCGA-ET-A3DU-01A-11D-A19J-08	TCGA-ET-A3DU-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	70168ed4-c985-46b2-8c9a-c0510fef5e77	f2a70c64-a751-4ecd-9361-59710dcc20d3	g.chr20:62340073C>G	uc002ygk.2	+	2	319	c.141C>G	c.(139-141)ATC>ATG	p.I47M	ARFRP1_uc002yga.2_5'Flank|ARFRP1_uc002ygc.2_5'Flank|ARFRP1_uc002ygh.3_5'Flank|ARFRP1_uc011abf.1_5'Flank|ARFRP1_uc011abg.1_5'Flank|ARFRP1_uc002yge.2_5'Flank|ARFRP1_uc002ygd.2_5'Flank|ARFRP1_uc002ygf.2_5'Flank|ARFRP1_uc002ygg.2_5'Flank|ARFRP1_uc011abh.1_5'Flank|ZGPAT_uc002ygi.2_Missense_Mutation_p.I47M|ZGPAT_uc002ygj.2_Missense_Mutation_p.I47M|ZGPAT_uc010gkk.1_Intron|ZGPAT_uc010gkl.1_Missense_Mutation_p.I47M|ZGPAT_uc002ygm.2_Missense_Mutation_p.I47M|ZGPAT_uc002ygn.3_RNA	NM_032527	NP_115916	Q8N5A5	ZGPAT_HUMAN	zinc finger, CCCH-type with G patch domain	47					negative regulation of epidermal growth factor receptor activity|negative regulation of transcription, DNA-dependent	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0	all_cancers(38;1.13e-12)|all_epithelial(29;2.64e-14)|Lung NSC(23;4.79e-10)|all_lung(23;1.7e-09)					AGGAGCTCATCGAGCTCACCG	0.672000													7	64	---	---	---	---	0	0	0.047766	0	0
Unknown	0	broad.mit.edu	37	21	9769119	9769119	+	RNA	SNP	G	A	A			TCGA-ET-A3DU-01A-11D-A19J-08	TCGA-ET-A3DU-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	70168ed4-c985-46b2-8c9a-c0510fef5e77	f2a70c64-a751-4ecd-9361-59710dcc20d3	g.chr21:9769119G>A	uc011abu.1	+	10		c.1094G>A								Homo sapiens, clone IMAGE:4720764, mRNA.																		GCTCAATTCCGATCTGTTGAA	0.373000													5	27	---	---	---	---	0	0	0.014758	0	0
Unknown	0	broad.mit.edu	37	21	9769121	9769121	+	RNA	SNP	T	A	A			TCGA-ET-A3DU-01A-11D-A19J-08	TCGA-ET-A3DU-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	70168ed4-c985-46b2-8c9a-c0510fef5e77	f2a70c64-a751-4ecd-9361-59710dcc20d3	g.chr21:9769121T>A	uc011abu.1	+	10		c.1096T>A								Homo sapiens, clone IMAGE:4720764, mRNA.																		TCAATTCCGATCTGTTGAAGG	0.373000													6	26	---	---	---	---	0	0	0.021553	0	0
FRAS1	80144	broad.mit.edu	37	4	79207662	79207662	+	Silent	SNP	C	T	T			TCGA-ET-A3DU-01A-11D-A19J-08	TCGA-ET-A3DU-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	70168ed4-c985-46b2-8c9a-c0510fef5e77	f2a70c64-a751-4ecd-9361-59710dcc20d3	g.chr4:79207662C>T	uc003hlb.2	+	14	1943	c.1503C>T	c.(1501-1503)GAC>GAT	p.D501D	FRAS1_uc003hkw.2_Silent_p.D501D|FRAS1_uc003hky.1_Silent_p.D205D|FRAS1_uc003hkz.2_Silent_p.D205D|FRAS1_uc003hla.1_Silent_p.D12D	NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	501	FU 2.|Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						CCTGTGGGGACGGCTTCTACC	0.632000													6	77	---	---	---	---	0	0	0.021553	0	0
DPCR1	135656	broad.mit.edu	37	6	30920155	30920155	+	Missense_Mutation	SNP	C	T	T			TCGA-ET-A3DU-01A-11D-A19J-08	TCGA-ET-A3DU-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	70168ed4-c985-46b2-8c9a-c0510fef5e77	f2a70c64-a751-4ecd-9361-59710dcc20d3	g.chr6:30920155C>T	uc003nsg.2	+	2	3914	c.3914C>T	c.(3913-3915)TCA>TTA	p.S1305L		NM_080870	NP_543146	Q3MIW9	DPCR1_HUMAN	diffuse panbronchiolitis critical region 1	429	Extracellular (Potential).					integral to membrane					0						AAAGATGGCTCACAGAAAGGT	0.478000													4	78	---	---	---	---	0	0	0.009096	0	0
ANKRD6	22881	broad.mit.edu	37	6	90333213	90333213	+	Missense_Mutation	SNP	T	C	C			TCGA-ET-A3DU-01A-11D-A19J-08	TCGA-ET-A3DU-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	70168ed4-c985-46b2-8c9a-c0510fef5e77	f2a70c64-a751-4ecd-9361-59710dcc20d3	g.chr6:90333213T>C	uc003pni.3	+	11	1323	c.982T>C	c.(982-984)TCC>CCC	p.S328P	ANKRD6_uc003pne.3_Missense_Mutation_p.S328P|ANKRD6_uc003pnf.3_Missense_Mutation_p.S293P|ANKRD6_uc011dzy.1_Missense_Mutation_p.S328P|ANKRD6_uc010kcd.2_Missense_Mutation_p.S269P|LYRM2_uc010kce.1_Intron|LYRM2_uc003png.2_Intron|ANKRD6_uc003pnh.3_5'UTR|LYRM2_uc010kcf.1_Intron|ANKRD6_uc003pnj.3_5'UTR	NM_014942	NP_055757	Q9Y2G4	ANKR6_HUMAN	ankyrin repeat domain 6	328							protein binding			ovary(2)|pancreas(1)	3		all_cancers(76;1.22e-09)|Prostate(29;1.16e-10)|Acute lymphoblastic leukemia(125;1.49e-10)|all_hematologic(105;7.79e-07)|all_epithelial(107;1.83e-05)|Lung NSC(302;0.239)		BRCA - Breast invasive adenocarcinoma(108;0.0209)		CCTGTCAGCCTCCCCAGAACC	0.572000													2	13	---	---	---	---	0	0	0.004672	0	0
AIM1	202	broad.mit.edu	37	6	106992466	106992466	+	Missense_Mutation	SNP	C	T	T			TCGA-ET-A3DU-01A-11D-A19J-08	TCGA-ET-A3DU-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	70168ed4-c985-46b2-8c9a-c0510fef5e77	f2a70c64-a751-4ecd-9361-59710dcc20d3	g.chr6:106992466C>T	uc003prh.2	+	10	4323	c.3836C>T	c.(3835-3837)CCT>CTT	p.P1279L	AIM1_uc003pri.2_Missense_Mutation_p.P83L	NM_001624	NP_001615	Q9Y4K1	AIM1_HUMAN	absent in melanoma 1	1279	Beta/gamma crystallin 'Greek key' 6.						sugar binding			breast(4)|ovary(2)|upper_aerodigestive_tract(1)|large_intestine(1)|skin(1)	9	Breast(9;0.0138)|all_epithelial(6;0.169)	all_cancers(87;4.67e-25)|all_epithelial(87;5.46e-21)|Acute lymphoblastic leukemia(125;2.15e-07)|all_hematologic(75;5.28e-06)|Colorectal(196;3.46e-05)|all_lung(197;5.94e-05)|Lung NSC(302;7.26e-05)|Ovarian(999;0.00473)	Epithelial(6;0.00114)|all cancers(7;0.00726)|BRCA - Breast invasive adenocarcinoma(8;0.0114)|OV - Ovarian serous cystadenocarcinoma(5;0.0305)	all cancers(137;1.73e-50)|Epithelial(106;2.42e-48)|OV - Ovarian serous cystadenocarcinoma(136;1.51e-27)|BRCA - Breast invasive adenocarcinoma(108;0.00104)|GBM - Glioblastoma multiforme(226;0.00858)		TATGAGAAACCTGGATTTACC	0.398000													4	69	---	---	---	---	0	0	0.014758	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-ET-A3DU-01A-11D-A19J-08	TCGA-ET-A3DU-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	70168ed4-c985-46b2-8c9a-c0510fef5e77	f2a70c64-a751-4ecd-9361-59710dcc20d3	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				19	52	---	---	---	---	0	0	0.049695	0	0
MLL3	58508	broad.mit.edu	37	7	151878394	151878394	+	Missense_Mutation	SNP	G	C	C			TCGA-ET-A3DU-01A-11D-A19J-08	TCGA-ET-A3DU-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	70168ed4-c985-46b2-8c9a-c0510fef5e77	f2a70c64-a751-4ecd-9361-59710dcc20d3	g.chr7:151878394G>C	uc003wla.2	-	36	6770	c.6551C>G	c.(6550-6552)TCT>TGT	p.S2184C	MLL3_uc003wkz.2_Missense_Mutation_p.S1245C	NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	2184	Pro-rich.				intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		AGTTTGTGTAGATGGTCTTGG	0.483000			N		medulloblastoma								6	89	---	---	---	---	0	0	0.038147	0	0
MLL3	58508	broad.mit.edu	37	7	151878929	151878929	+	Missense_Mutation	SNP	G	A	A			TCGA-ET-A3DU-01A-11D-A19J-08	TCGA-ET-A3DU-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	70168ed4-c985-46b2-8c9a-c0510fef5e77	f2a70c64-a751-4ecd-9361-59710dcc20d3	g.chr7:151878929G>A	uc003wla.2	-	36	6235	c.6016C>T	c.(6016-6018)CAC>TAC	p.H2006Y	MLL3_uc003wkz.2_Missense_Mutation_p.H1067Y	NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	2006	Pro-rich.				intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		TTAGTAAAGTGATCACTGGTT	0.463000			N		medulloblastoma								15	201	---	---	---	---	0	0	0.033300	0	0
MLL3	58508	broad.mit.edu	37	7	151879081	151879081	+	Missense_Mutation	SNP	G	A	A			TCGA-ET-A3DU-01A-11D-A19J-08	TCGA-ET-A3DU-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	70168ed4-c985-46b2-8c9a-c0510fef5e77	f2a70c64-a751-4ecd-9361-59710dcc20d3	g.chr7:151879081G>A	uc003wla.2	-	36	6083	c.5864C>T	c.(5863-5865)TCT>TTT	p.S1955F	MLL3_uc003wkz.2_Missense_Mutation_p.S1016F	NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	1955	Pro-rich.				intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		TGTCGTGGAAGAAGAACATAA	0.463000			N		medulloblastoma								12	210	---	---	---	---	0	0	0.020292	0	0
MLL3	58508	broad.mit.edu	37	7	151879574	151879574	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ET-A3DU-01A-11D-A19J-08	TCGA-ET-A3DU-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	70168ed4-c985-46b2-8c9a-c0510fef5e77	f2a70c64-a751-4ecd-9361-59710dcc20d3	g.chr7:151879574G>A	uc003wla.2	-	36	5590	c.5371C>T	c.(5371-5373)CAG>TAG	p.Q1791*	MLL3_uc003wkz.2_Nonsense_Mutation_p.Q852*	NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	1791	Gln-rich.				intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		AGAAGATGCTGAGAACCAAAT	0.398000			N		medulloblastoma								15	177	---	---	---	---	0	0	0.020292	0	0
TRPM3	80036	broad.mit.edu	37	9	73152080	73152080	+	Missense_Mutation	SNP	C	T	T	rs144341800		TCGA-ET-A3DU-01A-11D-A19J-08	TCGA-ET-A3DU-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	70168ed4-c985-46b2-8c9a-c0510fef5e77	f2a70c64-a751-4ecd-9361-59710dcc20d3	g.chr9:73152080C>T	uc004aid.2	-	25	4157	c.3913G>A	c.(3913-3915)GAA>AAA	p.E1305K	TRPM3_uc004ahu.2_Missense_Mutation_p.E1147K|TRPM3_uc004ahv.2_Missense_Mutation_p.E1107K|TRPM3_uc004ahw.2_Missense_Mutation_p.E1177K|TRPM3_uc004ahx.2_Missense_Mutation_p.E1164K|TRPM3_uc004ahy.2_Missense_Mutation_p.E1167K|TRPM3_uc004ahz.2_Missense_Mutation_p.E1154K|TRPM3_uc004aia.2_Missense_Mutation_p.E1152K|TRPM3_uc004aib.2_Missense_Mutation_p.E1142K|TRPM3_uc004aic.2_Missense_Mutation_p.E1305K	NM_001007471	NP_001007472	Q9HCF6	TRPM3_HUMAN	transient receptor potential cation channel,	1330	Cytoplasmic (Potential).					integral to membrane	calcium channel activity	p.E1309K(1)|p.E1177K(1)		ovary(3)|pancreas(2)|central_nervous_system(2)|skin(2)	9						GTGTTCCCTTCCTGGCTGTTG	0.567000													23	100	---	---	---	---	0	0	0.099896	0	0
MAGED1	9500	broad.mit.edu	37	X	51643276	51643276	+	Splice_Site	SNP	A	T	T			TCGA-ET-A3DU-01A-11D-A19J-08	TCGA-ET-A3DU-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	70168ed4-c985-46b2-8c9a-c0510fef5e77	f2a70c64-a751-4ecd-9361-59710dcc20d3	g.chrX:51643276A>T	uc004dpm.2	+	11	1940	c.1845_splice	c.e11-2	p.K615_splice	MAGED1_uc004dpn.2_Splice_Site_p.K671_splice|MAGED1_uc004dpo.2_Splice_Site_p.K615_splice	NM_001005332	NP_001005332	Q9Y5V3	MAGD1_HUMAN	melanoma antigen family D, 1 isoform b						apoptosis|induction of apoptosis by extracellular signals|negative regulation of epithelial cell proliferation|nerve growth factor receptor signaling pathway|regulation of transcription, DNA-dependent	cytoplasm|plasma membrane|protein complex	protein binding			ovary(3)	3	Ovarian(276;0.236)					TTGCTCTTTCAGATACCTGGA	0.448000										Multiple Myeloma(10;0.10)			3	42	---	---	---	---	0	0	0.004672	0	0
PLP1	5354	broad.mit.edu	37	X	103042822	103042822	+	Silent	SNP	C	T	T			TCGA-ET-A3DU-01A-11D-A19J-08	TCGA-ET-A3DU-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	70168ed4-c985-46b2-8c9a-c0510fef5e77	f2a70c64-a751-4ecd-9361-59710dcc20d3	g.chrX:103042822C>T	uc010nov.2	+	5	829	c.549C>T	c.(547-549)ACC>ACT	p.T183T	RAB9B_uc004eli.1_Intron|PLP1_uc004elk.2_Silent_p.T183T|PLP1_uc004elj.2_Silent_p.T148T|PLP1_uc011msf.1_Silent_p.T128T|PLP1_uc010nox.2_Silent_p.T137T	NM_001128834	NP_001122306	P60201	MYPR_HUMAN	proteolipid protein 1 isoform 1	183	Extracellular (Probable).		T -> N (in HLD1).		cell death|synaptic transmission	integral to membrane				ovary(1)	1						CCTGGACCACCTGCCAGTCTA	0.527000													33	92	---	---	---	---	0	0	0.054565	0	0
Unknown	0	broad.mit.edu	37	10	42400410	42400410	+	IGR	DEL	C	-	-	rs74186261		TCGA-ET-A3DU-01A-11D-A19J-08	TCGA-ET-A3DU-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	70168ed4-c985-46b2-8c9a-c0510fef5e77	f2a70c64-a751-4ecd-9361-59710dcc20d3	g.chr10:42400410delC								None (None upstream) : LOC441666 (426905 downstream)																							aacgggatttcttcacataat	0.000													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	12	68946696	68946696	+	IGR	DEL	T	-	-			TCGA-ET-A3DU-01A-11D-A19J-08	TCGA-ET-A3DU-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	70168ed4-c985-46b2-8c9a-c0510fef5e77	f2a70c64-a751-4ecd-9361-59710dcc20d3	g.chr12:68946696delT								MDM1 (220535 upstream) : RAP1B (57956 downstream)																							caaattattcttttttTTTTT	0.179													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	20	34341657	34341658	+	IGR	INS	-	A	A			TCGA-ET-A3DU-01A-11D-A19J-08	TCGA-ET-A3DU-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	70168ed4-c985-46b2-8c9a-c0510fef5e77	f2a70c64-a751-4ecd-9361-59710dcc20d3	g.chr20:34341657_34341658insA								RBM39 (11464 upstream) : PHF20 (18265 downstream)																							AGAAATTAtggaaaaaaaaaaa	0.168													2	4	---	---	---	---					
BOD1L	259282	broad.mit.edu	37	4	13593582	13593582	+	Frame_Shift_Del	DEL	G	-	-			TCGA-ET-A3DU-01A-11D-A19J-08	TCGA-ET-A3DU-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	70168ed4-c985-46b2-8c9a-c0510fef5e77	f2a70c64-a751-4ecd-9361-59710dcc20d3	g.chr4:13593582delG	uc003gmz.1	-	13	8230	c.8113delC	c.(8113-8115)CAGfs	p.Q2705fs		NM_148894	NP_683692	Q8NFC6	BOD1L_HUMAN	biorientation of chromosomes in cell division	2705							DNA binding			ovary(5)|breast(1)	6						GGCTCCCTCTGGAGTTCAGCT	0.308													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	5	147518063	147518063	+	IGR	DEL	G	-	-	rs12652896	by1000genomes	TCGA-ET-A3DU-01A-11D-A19J-08	TCGA-ET-A3DU-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	70168ed4-c985-46b2-8c9a-c0510fef5e77	f2a70c64-a751-4ecd-9361-59710dcc20d3	g.chr5:147518063delG								SPINK5 (1138 upstream) : SPINK14 (31233 downstream)																							AAGAAAAAAAGAAGAAGGGCC	0.299													4	8	---	---	---	---					
