Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
TAS2R7	50837	broad.mit.edu	37	12	10954956	10954956	+	Missense_Mutation	SNP	A	G	G			TCGA-FE-A3PB-01A-11D-A21Z-08	TCGA-FE-A3PB-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	a7c8abdf-02bc-455f-9e43-f49227b349b2	60e3b235-1934-460a-b420-b02c1f4a3acd	g.chr12:10954956A>G	uc001qyv.2	-	1	271	c.214T>C	c.(214-216)TAT>CAT	p.Y72H		NM_023919	NP_076408	Q9NYW3	TA2R7_HUMAN	taste receptor, type 2, member 7	72	Helical; Name=2; (Potential).				sensory perception of taste	integral to membrane	taste receptor activity			skin(1)	1						ACATCTGGATATAGCACCAAT	0.373000													28	51	---	---	---	---	0	0	0.041601	0	0
Unknown	0	broad.mit.edu	37	22	18844780	18844780	+	RNA	SNP	G	A	A			TCGA-FE-A3PB-01A-11D-A21Z-08	TCGA-FE-A3PB-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	a7c8abdf-02bc-455f-9e43-f49227b349b2	60e3b235-1934-460a-b420-b02c1f4a3acd	g.chr22:18844780G>A	uc002zoe.2	+	4		c.2034G>A			uc002zof.2_5'Flank					Homo sapiens cDNA FLJ76361 complete cds.																		AGCAGTGCACGTGGAGGAGAC	0.577000													3	10	---	---	---	---	0	0	0.004672	0	0
PCDHGB3	56102	broad.mit.edu	37	5	140750149	140750149	+	Missense_Mutation	SNP	C	T	T			TCGA-FE-A3PB-01A-11D-A21Z-08	TCGA-FE-A3PB-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	a7c8abdf-02bc-455f-9e43-f49227b349b2	60e3b235-1934-460a-b420-b02c1f4a3acd	g.chr5:140750149C>T	uc003ljw.1	+	1	188	c.188C>T	c.(187-189)ACT>ATT	p.T63I	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc011dat.1_Missense_Mutation_p.T63I	NM_018924	NP_061747	Q9Y5G1	PCDGF_HUMAN	protocadherin gamma subfamily B, 3 isoform 1	63	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GATTTACCTACTAGGAACCTG	0.547000													49	130	---	---	---	---	0	0	0.048971	0	0
HLA-H	3136	broad.mit.edu	37	6	29855586	29855586	+	5'Flank	SNP	A	G	G	rs115805339		TCGA-FE-A3PB-01A-11D-A21Z-08	TCGA-FE-A3PB-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	a7c8abdf-02bc-455f-9e43-f49227b349b2	60e3b235-1934-460a-b420-b02c1f4a3acd	g.chr6:29855586A>G	uc010jro.2	+						HLA-G_uc011dmb.1_Intron|HLA-H_uc003nod.2_Splice_Site					SubName: Full=cDNA FLJ52667, highly similar to HLA class I histocompatibility antigen, alpha chain H;												0						CCTGGCCCTGACCCTGACCCA	0.617000													4	33	---	---	---	---	0	0	0.021553	0	0
PKHD1	5314	broad.mit.edu	37	6	51900392	51900392	+	Silent	SNP	G	A	A			TCGA-FE-A3PB-01A-11D-A21Z-08	TCGA-FE-A3PB-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	a7c8abdf-02bc-455f-9e43-f49227b349b2	60e3b235-1934-460a-b420-b02c1f4a3acd	g.chr6:51900392G>A	uc003pah.1	-	28	3501	c.3225C>T	c.(3223-3225)CCC>CCT	p.P1075P	PKHD1_uc003pai.2_Silent_p.P1075P	NM_138694	NP_619639	P08F94	PKHD1_HUMAN	fibrocystin isoform 1	1075	IPT/TIG 5.|Extracellular (Potential).				cell-cell adhesion|cilium assembly|homeostatic process|kidney development|negative regulation of cellular component movement	anchored to external side of plasma membrane|apical plasma membrane|integral to membrane|microtubule basal body	protein binding|receptor activity			lung(15)|ovary(15)|large_intestine(5)|central_nervous_system(3)|skin(3)|breast(2)|upper_aerodigestive_tract(1)	44	Lung NSC(77;0.0605)					CACTTACCCTGGGTGGAACTT	0.393000													4	138	---	---	---	---	0	0	0.014758	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-FE-A3PB-01A-11D-A21Z-08	TCGA-FE-A3PB-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	a7c8abdf-02bc-455f-9e43-f49227b349b2	60e3b235-1934-460a-b420-b02c1f4a3acd	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				22	53	---	---	---	---	0	0	0.018920	0	0
Unknown	0	broad.mit.edu	37	1	700514	700514	+	RNA	DEL	A	-	-			TCGA-FE-A3PB-01A-11D-A21Z-08	TCGA-FE-A3PB-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	a7c8abdf-02bc-455f-9e43-f49227b349b2	60e3b235-1934-460a-b420-b02c1f4a3acd	g.chr1:700514delA	uc001abo.2	-	7		c.1040delT								Homo sapiens cDNA clone IMAGE:4129277, partial cds.																		actccatctcaaaaaaaaaaa	0.179													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	1	121484633	121484633	+	IGR	DEL	T	-	-	rs4898120		TCGA-FE-A3PB-01A-11D-A21Z-08	TCGA-FE-A3PB-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	a7c8abdf-02bc-455f-9e43-f49227b349b2	60e3b235-1934-460a-b420-b02c1f4a3acd	g.chr1:121484633delT								LOC647121 (170947 upstream) : None (None downstream)																							agagtttaacttttcttttca	0.000													7	2434	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42384710	42384710	+	IGR	DEL	T	-	-	rs151222414		TCGA-FE-A3PB-01A-11D-A21Z-08	TCGA-FE-A3PB-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	a7c8abdf-02bc-455f-9e43-f49227b349b2	60e3b235-1934-460a-b420-b02c1f4a3acd	g.chr10:42384710delT								None (None upstream) : LOC441666 (442605 downstream)																							ttgaacggaatcgaatggaat	0.000													9	761	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42384716	42384716	+	IGR	DEL	G	-	-			TCGA-FE-A3PB-01A-11D-A21Z-08	TCGA-FE-A3PB-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	a7c8abdf-02bc-455f-9e43-f49227b349b2	60e3b235-1934-460a-b420-b02c1f4a3acd	g.chr10:42384716delG								None (None upstream) : LOC441666 (442599 downstream)																							ggaatcgaatggaatcatcat	0.000													7	799	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42385259	42385259	+	IGR	DEL	C	-	-			TCGA-FE-A3PB-01A-11D-A21Z-08	TCGA-FE-A3PB-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	a7c8abdf-02bc-455f-9e43-f49227b349b2	60e3b235-1934-460a-b420-b02c1f4a3acd	g.chr10:42385259delC								None (None upstream) : LOC441666 (442056 downstream)																							caaatggaatcgaatggaatc	0.000													10	3766	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42385261	42385261	+	IGR	DEL	A	-	-			TCGA-FE-A3PB-01A-11D-A21Z-08	TCGA-FE-A3PB-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	a7c8abdf-02bc-455f-9e43-f49227b349b2	60e3b235-1934-460a-b420-b02c1f4a3acd	g.chr10:42385261delA								None (None upstream) : LOC441666 (442054 downstream)																							aatggaatcgaatggaatcac	0.000													8	3631	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42385606	42385606	+	IGR	DEL	G	-	-	rs67827809		TCGA-FE-A3PB-01A-11D-A21Z-08	TCGA-FE-A3PB-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	a7c8abdf-02bc-455f-9e43-f49227b349b2	60e3b235-1934-460a-b420-b02c1f4a3acd	g.chr10:42385606delG								None (None upstream) : LOC441666 (441709 downstream)																							ggaattcaaaggaatcatcat	0.000													7	1221	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42385707	42385722	+	IGR	DEL	AATGGAATCATCATTA	-	-	rs33914712		TCGA-FE-A3PB-01A-11D-A21Z-08	TCGA-FE-A3PB-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	a7c8abdf-02bc-455f-9e43-f49227b349b2	60e3b235-1934-460a-b420-b02c1f4a3acd	g.chr10:42385707_42385722delAATGGAATCATCATTA								None (None upstream) : LOC441666 (441593 downstream)																							aatggaatcgaatggaatcatcattaaatggaatca	0.042													27	142	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42390323	42390325	+	IGR	DEL	TCG	-	-			TCGA-FE-A3PB-01A-11D-A21Z-08	TCGA-FE-A3PB-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	a7c8abdf-02bc-455f-9e43-f49227b349b2	60e3b235-1934-460a-b420-b02c1f4a3acd	g.chr10:42390323_42390325delTCG								None (None upstream) : LOC441666 (436990 downstream)																							ggaatcatcatcgaatggaatcg	0.000													20	341	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42392726	42392748	+	IGR	DEL	AATCGAATGGAATTATCGAATGC	-	-	rs67625628		TCGA-FE-A3PB-01A-11D-A21Z-08	TCGA-FE-A3PB-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	a7c8abdf-02bc-455f-9e43-f49227b349b2	60e3b235-1934-460a-b420-b02c1f4a3acd	g.chr10:42392726_42392748delAATCGAATGGAATTATCGAATGC								None (None upstream) : LOC441666 (434567 downstream)																							cctcaaatggaatcgaatggaattatcgaatgcaatcgaatgg	0.000													24	1858	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42400455	42400455	+	IGR	DEL	T	-	-	rs71264011		TCGA-FE-A3PB-01A-11D-A21Z-08	TCGA-FE-A3PB-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	a7c8abdf-02bc-455f-9e43-f49227b349b2	60e3b235-1934-460a-b420-b02c1f4a3acd	g.chr10:42400455delT								None (None upstream) : LOC441666 (426860 downstream)																							cttctttgtgttgtgtgtatt	0.000													60	804	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42528030	42528030	+	IGR	DEL	G	-	-			TCGA-FE-A3PB-01A-11D-A21Z-08	TCGA-FE-A3PB-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	a7c8abdf-02bc-455f-9e43-f49227b349b2	60e3b235-1934-460a-b420-b02c1f4a3acd	g.chr10:42528030delG								None (None upstream) : LOC441666 (299285 downstream)																							attatatgaagaaatcccgtt	0.000													75	727	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42596908	42596910	+	IGR	DEL	TCA	-	-	rs74210869		TCGA-FE-A3PB-01A-11D-A21Z-08	TCGA-FE-A3PB-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	a7c8abdf-02bc-455f-9e43-f49227b349b2	60e3b235-1934-460a-b420-b02c1f4a3acd	g.chr10:42596908_42596910delTCA								None (None upstream) : LOC441666 (230405 downstream)																							ggaatcatcttcaaatggaaagg	0.000													22	1543	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42596909	42596909	+	IGR	DEL	C	-	-			TCGA-FE-A3PB-01A-11D-A21Z-08	TCGA-FE-A3PB-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	a7c8abdf-02bc-455f-9e43-f49227b349b2	60e3b235-1934-460a-b420-b02c1f4a3acd	g.chr10:42596909delC								None (None upstream) : LOC441666 (230406 downstream)																							gaatcatcttcaaatggaaag	0.000													8	1587	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42597159	42597159	+	IGR	DEL	T	-	-	rs149908177		TCGA-FE-A3PB-01A-11D-A21Z-08	TCGA-FE-A3PB-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	a7c8abdf-02bc-455f-9e43-f49227b349b2	60e3b235-1934-460a-b420-b02c1f4a3acd	g.chr10:42597159delT								None (None upstream) : LOC441666 (230156 downstream)																							ttgaacggaatcgaatggaat	0.035													10	2043	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42599640	42599640	+	IGR	DEL	A	-	-	rs145203825		TCGA-FE-A3PB-01A-11D-A21Z-08	TCGA-FE-A3PB-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	a7c8abdf-02bc-455f-9e43-f49227b349b2	60e3b235-1934-460a-b420-b02c1f4a3acd	g.chr10:42599640delA								None (None upstream) : LOC441666 (227675 downstream)																							aatggaaatgaaaggagtcat	0.000													8	2813	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42600053	42600053	+	IGR	DEL	T	-	-			TCGA-FE-A3PB-01A-11D-A21Z-08	TCGA-FE-A3PB-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	a7c8abdf-02bc-455f-9e43-f49227b349b2	60e3b235-1934-460a-b420-b02c1f4a3acd	g.chr10:42600053delT								None (None upstream) : LOC441666 (227262 downstream)																							ttgaacggaattgaatggaat	0.000													11	645	---	---	---	---					
TYSND1	219743	broad.mit.edu	37	10	71905929	71905931	+	In_Frame_Del	DEL	CAG	-	-			TCGA-FE-A3PB-01A-11D-A21Z-08	TCGA-FE-A3PB-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	a7c8abdf-02bc-455f-9e43-f49227b349b2	60e3b235-1934-460a-b420-b02c1f4a3acd	g.chr10:71905929_71905931delCAG	uc001jqr.2	-	1	566_568	c.412_414delCTG	c.(412-414)CTGdel	p.L138del	TYSND1_uc001jqq.2_Intron|TYSND1_uc001jqs.2_In_Frame_Del_p.L138del|TYSND1_uc001jqt.2_Intron	NM_173555	NP_775826	Q2T9J0	TYSD1_HUMAN	trypsin domain containing 1 isoform a	138					proteolysis	peroxisome	serine-type endopeptidase activity			large_intestine(1)	1						CCGGGCAGCTCAGCAGCAGCAGC	0.739													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	11	43105503	43105505	+	IGR	DEL	GAG	-	-			TCGA-FE-A3PB-01A-11D-A21Z-08	TCGA-FE-A3PB-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	a7c8abdf-02bc-455f-9e43-f49227b349b2	60e3b235-1934-460a-b420-b02c1f4a3acd	g.chr11:43105503_43105505delGAG								None (None upstream) : API5 (228000 downstream)																							ggaggaggtagaggaggaggagg	0.000													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	14	35163898	35163899	+	IGR	INS	-	A	A			TCGA-FE-A3PB-01A-11D-A21Z-08	TCGA-FE-A3PB-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	a7c8abdf-02bc-455f-9e43-f49227b349b2	60e3b235-1934-460a-b420-b02c1f4a3acd	g.chr14:35163898_35163899insA								SNX6 (64532 upstream) : CFL2 (15689 downstream)																							CTTTTCACCATAAAAAAAATTT	0.361													6	8	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	46405144	46405144	+	IGR	DEL	T	-	-			TCGA-FE-A3PB-01A-11D-A21Z-08	TCGA-FE-A3PB-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	a7c8abdf-02bc-455f-9e43-f49227b349b2	60e3b235-1934-460a-b420-b02c1f4a3acd	g.chr16:46405144delT								None (None upstream) : ANKRD26P1 (98105 downstream)																							tccgagtccattcgatgattc	0.000													13	426	---	---	---	---					
CDK12	51755	broad.mit.edu	37	17	37686901	37686901	+	Frame_Shift_Del	DEL	C	-	-			TCGA-FE-A3PB-01A-11D-A21Z-08	TCGA-FE-A3PB-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	a7c8abdf-02bc-455f-9e43-f49227b349b2	60e3b235-1934-460a-b420-b02c1f4a3acd	g.chr17:37686901delC	uc010cvv.2	+	14	4391	c.3805delC	c.(3805-3807)CCCfs	p.P1269fs	CDK12_uc002hrw.3_Frame_Shift_Del_p.P1260fs	NM_016507	NP_057591	Q9NYV4	CDK12_HUMAN	Cdc2-related kinase, arginine/serine-rich	1269	Poly-Pro.				mRNA processing|phosphorylation of RNA polymerase II C-terminal domain|protein autophosphorylation|regulation of MAP kinase activity|RNA splicing	nuclear cyclin-dependent protein kinase holoenzyme complex|nuclear speck|nucleolus	ATP binding|cyclin-dependent protein kinase activity|protein binding|RNA polymerase II carboxy-terminal domain kinase activity			ovary(10)|lung(4)|breast(2)|skin(2)|large_intestine(1)	19						GCCCCCTGAGCCCCCCGGACC	0.562										TCGA Ovarian(9;0.13)			9	402	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	27733247	27733247	+	IGR	DEL	A	-	-			TCGA-FE-A3PB-01A-11D-A21Z-08	TCGA-FE-A3PB-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	a7c8abdf-02bc-455f-9e43-f49227b349b2	60e3b235-1934-460a-b420-b02c1f4a3acd	g.chr19:27733247delA								None (None upstream) : LOC148189 (548155 downstream)																							aactagacagaatcattctca	0.000													7	415	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	27736410	27736410	+	IGR	DEL	A	-	-			TCGA-FE-A3PB-01A-11D-A21Z-08	TCGA-FE-A3PB-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	a7c8abdf-02bc-455f-9e43-f49227b349b2	60e3b235-1934-460a-b420-b02c1f4a3acd	g.chr19:27736410delA								None (None upstream) : LOC148189 (544992 downstream)																							taaagtctgcaagtggatatt	0.000													7	302	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	27738491	27738491	+	IGR	DEL	T	-	-			TCGA-FE-A3PB-01A-11D-A21Z-08	TCGA-FE-A3PB-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	a7c8abdf-02bc-455f-9e43-f49227b349b2	60e3b235-1934-460a-b420-b02c1f4a3acd	g.chr19:27738491delT								None (None upstream) : LOC148189 (542911 downstream)																							tggaaacgggtttttttcatg	0.000													26	776	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	30542061	30542063	+	IGR	DEL	GAG	-	-			TCGA-FE-A3PB-01A-11D-A21Z-08	TCGA-FE-A3PB-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	a7c8abdf-02bc-455f-9e43-f49227b349b2	60e3b235-1934-460a-b420-b02c1f4a3acd	g.chr2:30542061_30542063delGAG								LBH (59162 upstream) : LCLAT1 (128060 downstream)																							gtggggagaagaggaggaggagg	0.453													4	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	20	17196135	17196137	+	IGR	DEL	TCC	-	-			TCGA-FE-A3PB-01A-11D-A21Z-08	TCGA-FE-A3PB-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	a7c8abdf-02bc-455f-9e43-f49227b349b2	60e3b235-1934-460a-b420-b02c1f4a3acd	g.chr20:17196135_17196137delTCC								OTOR (463327 upstream) : PCSK2 (10615 downstream)																							cttctcctcttcctcctcctcct	0.286													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	22	21025306	21025307	+	IGR	INS	-	C	C			TCGA-FE-A3PB-01A-11D-A21Z-08	TCGA-FE-A3PB-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	a7c8abdf-02bc-455f-9e43-f49227b349b2	60e3b235-1934-460a-b420-b02c1f4a3acd	g.chr22:21025306_21025307insC								MED15 (83388 upstream) : POM121L4P (18536 downstream)																							CTCCACCGGGGCCCCCGCCAAC	0.752													3	5	---	---	---	---					
FAM157A	728262	broad.mit.edu	37	3	197880131	197880133	+	In_Frame_Del	DEL	GCA	-	-			TCGA-FE-A3PB-01A-11D-A21Z-08	TCGA-FE-A3PB-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	a7c8abdf-02bc-455f-9e43-f49227b349b2	60e3b235-1934-460a-b420-b02c1f4a3acd	g.chr3:197880131_197880133delGCA	uc011bup.1	+	2	210_212	c.210_212delGCA	c.(208-213)TGGCAG>TGG	p.Q84del		NM_001145248	NP_001138720	C9JC47	F157A_HUMAN	family with sequence similarity 157, member A	84	Gln-rich.										0						ACAAGAACTGgcagcagcagcag	0.399													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	61968949	61968949	+	IGR	DEL	A	-	-	rs2123586		TCGA-FE-A3PB-01A-11D-A21Z-08	TCGA-FE-A3PB-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	a7c8abdf-02bc-455f-9e43-f49227b349b2	60e3b235-1934-460a-b420-b02c1f4a3acd	g.chr7:61968949delA								None (None upstream) : LOC643955 (782723 downstream)																							ctctgtttgtaaagtctgcaa	0.000													19	1887	---	---	---	---					
LMX1B	4010	broad.mit.edu	37	9	129456049	129456051	+	In_Frame_Del	DEL	CAG	-	-			TCGA-FE-A3PB-01A-11D-A21Z-08	TCGA-FE-A3PB-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	a7c8abdf-02bc-455f-9e43-f49227b349b2	60e3b235-1934-460a-b420-b02c1f4a3acd	g.chr9:129456049_129456051delCAG	uc004bqj.2	+	6	825_827	c.775_777delCAG	c.(775-777)CAGdel	p.Q262del	LMX1B_uc004bqi.2_In_Frame_Del_p.Q262del|LMX1B_uc011maa.1_In_Frame_Del_p.Q262del	NM_002316	NP_002307	O60663	LMX1B_HUMAN	LIM homeobox transcription factor 1, beta	262	Poly-Gln.				dorsal/ventral pattern formation|in utero embryonic development	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						GCGGCGGCACCAGCAGCAGCAGG	0.517									Nail-Patella_Syndrome				2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	Y	10029124	10029124	+	IGR	DEL	G	-	-			TCGA-FE-A3PB-01A-11D-A21Z-08	TCGA-FE-A3PB-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	a7c8abdf-02bc-455f-9e43-f49227b349b2	60e3b235-1934-460a-b420-b02c1f4a3acd	g.chrY:10029124delG								TTTY22 (378270 upstream) : None (None downstream)																							ACCAGTTTTTGGTTTATTTTG	0.408													5	11	---	---	---	---					
