Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
VCAM1	7412	broad.mit.edu	37	1	101198098	101198098	+	Silent	SNP	C	A	A			TCGA-BJ-A0Z9-01A-11D-A10S-08	TCGA-BJ-A0Z9-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	498dad0c-0eb2-47a1-8a9a-819e7e3aa289	f58ba787-903f-4adf-8a27-4378692a9dd0	g.chr1:101198098C>A	uc001dti.2	+	7	1770	c.1650C>A	c.(1648-1650)CTC>CTA	p.L550L	VCAM1_uc001dtj.2_Silent_p.L458L|VCAM1_uc010ouj.1_Silent_p.L488L	NM_001078	NP_001069	P19320	VCAM1_HUMAN	vascular cell adhesion molecule 1 isoform a	550	Ig-like C2-type 6.|Extracellular (Potential).				heterophilic cell-cell adhesion|interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|leukocyte tethering or rolling|membrane to membrane docking|positive regulation of T cell proliferation|regulation of immune response	alpha9-beta1 integrin-vascular cell adhesion molecule-1 complex|apical part of cell|external side of plasma membrane|extracellular space|filopodium|integral to membrane|microvillus|podosome	cell adhesion molecule binding|integrin binding			central_nervous_system(1)	1		all_epithelial(167;3.83e-06)|all_lung(203;0.000485)|Lung NSC(277;0.0011)		Epithelial(280;0.0227)|all cancers(265;0.0276)|COAD - Colon adenocarcinoma(174;0.149)|Colorectal(144;0.169)|Lung(183;0.196)	Carvedilol(DB01136)	GCAGGCAGCTCCCTAACGGGG	0.478000													18	87	---	---	---	---	1.45105e-14	1.68016e-14	0.175082	1	0
FCGR3B	2215	broad.mit.edu	37	1	161599794	161599794	+	Silent	SNP	C	T	T			TCGA-BJ-A0Z9-01A-11D-A10S-08	TCGA-BJ-A0Z9-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	498dad0c-0eb2-47a1-8a9a-819e7e3aa289	f58ba787-903f-4adf-8a27-4378692a9dd0	g.chr1:161599794C>T	uc009wul.2	-	3	367	c.93G>A	c.(91-93)GAG>GAA	p.E31E		NM_000570	NP_000561	O75015	FCG3B_HUMAN	low affinity immunoglobulin gamma Fc region	31					immune response	anchored to membrane|extracellular region|plasma membrane	IgG binding|receptor activity				0	all_cancers(52;4.89e-16)|all_hematologic(112;0.0207)		BRCA - Breast invasive adenocarcinoma(70;0.00376)		Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	ACCATTGAGGCTCCAGGAACA	0.542000													5	69	---	---	---	---	0	0	0.184627	0	0
SLC26A9	115019	broad.mit.edu	37	1	205892719	205892719	+	Missense_Mutation	SNP	G	C	C			TCGA-BJ-A0Z9-01A-11D-A10S-08	TCGA-BJ-A0Z9-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	498dad0c-0eb2-47a1-8a9a-819e7e3aa289	f58ba787-903f-4adf-8a27-4378692a9dd0	g.chr1:205892719G>C	uc001hdq.2	-	14	1633	c.1519C>G	c.(1519-1521)CAG>GAG	p.Q507E	SLC26A9_uc001hdo.2_Missense_Mutation_p.Q175E|SLC26A9_uc001hdp.2_Missense_Mutation_p.Q507E	NM_052934	NP_443166	Q7LBE3	S26A9_HUMAN	solute carrier family 26, member 9 isoform a	507						integral to membrane	chloride channel activity|secondary active sulfate transmembrane transporter activity			ovary(1)|skin(1)	2	Breast(84;0.201)		BRCA - Breast invasive adenocarcinoma(75;0.0458)			TCCATGACCTGGGCCAGTGCA	0.493000													32	83	---	---	---	---	0	0	0.183431	0	0
C11orf70	85016	broad.mit.edu	37	11	101951999	101951999	+	Missense_Mutation	SNP	A	C	C			TCGA-BJ-A0Z9-01A-11D-A10S-08	TCGA-BJ-A0Z9-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	498dad0c-0eb2-47a1-8a9a-819e7e3aa289	f58ba787-903f-4adf-8a27-4378692a9dd0	g.chr11:101951999A>C	uc001pgp.2	+	6	690	c.662A>C	c.(661-663)AAA>ACA	p.K221T	C11orf70_uc001pgq.2_Missense_Mutation_p.K183T	NM_032930	NP_116319	Q9BRQ4	CK070_HUMAN	hypothetical protein LOC85016	221										skin(1)	1	all_epithelial(12;0.0137)	Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.0137)	Lung(13;0.245)	BRCA - Breast invasive adenocarcinoma(274;0.0335)		TCTGTCTTTAAAGTTTCAGCT	0.313000													19	94	---	---	---	---	0	0	0.055883	0	0
DDX12	440081	broad.mit.edu	37	12	9580293	9580293	+	Missense_Mutation	SNP	A	G	G	rs139954536	by1000genomes	TCGA-BJ-A0Z9-01A-11D-A10S-08	TCGA-BJ-A0Z9-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	498dad0c-0eb2-47a1-8a9a-819e7e3aa289	f58ba787-903f-4adf-8a27-4378692a9dd0	g.chr12:9580293A>G	uc010sgs.1	-	14	1613	c.1418T>C	c.(1417-1419)ATG>ACG	p.M473T		NM_004400	NP_004391			DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 12												0						CTTCAGCTCCATCCCTGAGAA	0.502000													4	46	---	---	---	---	0	0	0.184627	0	0
CHRNA5	1138	broad.mit.edu	37	15	78880716	78880716	+	Missense_Mutation	SNP	C	A	A	rs74913206		TCGA-BJ-A0Z9-01A-11D-A10S-08	TCGA-BJ-A0Z9-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	498dad0c-0eb2-47a1-8a9a-819e7e3aa289	f58ba787-903f-4adf-8a27-4378692a9dd0	g.chr15:78880716C>A	uc002bdy.2	+	4	526	c.364C>A	c.(364-366)CGT>AGT	p.R122S	CHRNA5_uc002bdz.2_Missense_Mutation_p.R122S	NM_000745	NP_000736	P30532	ACHA5_HUMAN	cholinergic receptor, nicotinic, alpha 5	122	Extracellular (Potential).				behavioral response to nicotine	cell junction|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity			ovary(1)|central_nervous_system(1)|skin(1)	3						AAAAGTTATACGTGTTCCTTC	0.294000													11	88	---	---	---	---	4.3838e-07	4.70457e-07	0.105934	1	0
FBN3	84467	broad.mit.edu	37	19	8191377	8191377	+	Silent	SNP	C	T	T			TCGA-BJ-A0Z9-01A-11D-A10S-08	TCGA-BJ-A0Z9-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	498dad0c-0eb2-47a1-8a9a-819e7e3aa289	f58ba787-903f-4adf-8a27-4378692a9dd0	g.chr19:8191377C>T	uc002mjf.2	-	19	2550	c.2529G>A	c.(2527-2529)GGG>GGA	p.G843G		NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	843	TB 4.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						CGCAGGGGCTCCCCCAGGCTG	0.677000													8	27	---	---	---	---	0	0	0.047766	0	0
SIGLEC11	114132	broad.mit.edu	37	19	50455611	50455611	+	Silent	SNP	G	A	A			TCGA-BJ-A0Z9-01A-11D-A10S-08	TCGA-BJ-A0Z9-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	498dad0c-0eb2-47a1-8a9a-819e7e3aa289	f58ba787-903f-4adf-8a27-4378692a9dd0	g.chr19:50455611G>A	uc010ybh.1	-	9	1783	c.1692C>T	c.(1690-1692)GCC>GCT	p.A564A	SIGLEC11_uc010ybi.1_Silent_p.A468A	NM_052884	NP_443116	Q96RL6	SIG11_HUMAN	sialic acid binding Ig-like lectin 11 isoform 1	564	Helical; (Potential).				cell adhesion	integral to membrane	sugar binding			ovary(3)|central_nervous_system(2)|pancreas(1)	6		all_lung(116;0.00318)|all_neural(266;0.107)|Ovarian(192;0.17)		GBM - Glioblastoma multiforme(134;0.00107)|OV - Ovarian serous cystadenocarcinoma(262;0.00517)		CAGCTCCCAGGGCAGCCCCCA	0.657000													43	73	---	---	---	---	0	0	0.139131	0	0
APOB	338	broad.mit.edu	37	2	21230694	21230694	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BJ-A0Z9-01A-11D-A10S-08	TCGA-BJ-A0Z9-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	498dad0c-0eb2-47a1-8a9a-819e7e3aa289	f58ba787-903f-4adf-8a27-4378692a9dd0	g.chr2:21230694C>A	uc002red.2	-	26	9174	c.9046G>T	c.(9046-9048)GAG>TAG	p.E3016*		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	3016					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	CCAGTAAACTCTGCCTTCCCT	0.423000													38	62	---	---	---	---	4.90274e-10	5.39302e-10	0.086207	1	0
PTH2R	5746	broad.mit.edu	37	2	209302540	209302540	+	Missense_Mutation	SNP	A	C	C			TCGA-BJ-A0Z9-01A-11D-A10S-08	TCGA-BJ-A0Z9-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	498dad0c-0eb2-47a1-8a9a-819e7e3aa289	f58ba787-903f-4adf-8a27-4378692a9dd0	g.chr2:209302540A>C	uc002vdb.2	+	4	558	c.345A>C	c.(343-345)TTA>TTC	p.L115F	PTH2R_uc010zjb.1_Missense_Mutation_p.L126F	NM_005048	NP_005039	P49190	PTH2R_HUMAN	parathyroid hormone 2 receptor precursor	115	Extracellular (Potential).					integral to plasma membrane	parathyroid hormone receptor activity			ovary(1)|breast(1)|skin(1)	3				Epithelial(149;0.0684)|Lung(261;0.0785)|LUSC - Lung squamous cell carcinoma(261;0.0836)		TGCACAGCTTAAATAAAACAT	0.413000													15	97	---	---	---	---	0	0	0.132662	0	0
SEL1L2	80343	broad.mit.edu	37	20	13830243	13830243	+	Missense_Mutation	SNP	G	A	A			TCGA-BJ-A0Z9-01A-11D-A10S-08	TCGA-BJ-A0Z9-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	498dad0c-0eb2-47a1-8a9a-819e7e3aa289	f58ba787-903f-4adf-8a27-4378692a9dd0	g.chr20:13830243G>A	uc010gcf.2	-	20	2037	c.1955C>T	c.(1954-1956)ACG>ATG	p.T652M	SEL1L2_uc002woq.3_Missense_Mutation_p.T513M|SEL1L2_uc010zrl.1_Missense_Mutation_p.T539M|SEL1L2_uc002wor.2_RNA	NM_025229	NP_079505	Q5TEA6	SE1L2_HUMAN	sel-1 suppressor of lin-12-like 2 precursor	652	Extracellular (Potential).					integral to membrane	binding			ovary(2)	2						GTTCCATCTCGTTGTGAACTG	0.483000													33	62	---	---	---	---	0	0	0.193644	0	0
Unknown	0	broad.mit.edu	37	22	20980437	20980437	+	RNA	SNP	A	G	G	rs73159173	by1000genomes	TCGA-BJ-A0Z9-01A-11D-A10S-08	TCGA-BJ-A0Z9-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	498dad0c-0eb2-47a1-8a9a-819e7e3aa289	f58ba787-903f-4adf-8a27-4378692a9dd0	g.chr22:20980437A>G	uc002zsv.2	-	4		c.1342T>C								Homo sapiens, clone IMAGE:5171202, mRNA.																		CCTCCAGTGGAGAGTTGAAAA	0.433000													3	34	---	---	---	---	0	0	0.184627	0	0
GK3P	2713	broad.mit.edu	37	4	166199345	166199345	+	Missense_Mutation	SNP	C	T	T	rs55806488	by1000genomes	TCGA-BJ-A0Z9-01A-11D-A10S-08	TCGA-BJ-A0Z9-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	498dad0c-0eb2-47a1-8a9a-819e7e3aa289	f58ba787-903f-4adf-8a27-4378692a9dd0	g.chr4:166199345C>T	uc003ird.3	-	1	1831	c.1453G>A	c.(1453-1455)GAG>AAG	p.E485K	KLHL2_uc003irb.2_Intron|KLHL2_uc011cjm.1_Intron|KLHL2_uc003irc.2_Intron|KLHL2_uc010ira.2_Intron	NM_000167	NP_000158			glycerol kinase isoform b												0						TCAAACCGCTCCATCGTGACG	0.507000													4	40	---	---	---	---	0	0	0.150653	0	0
PDZD2	23037	broad.mit.edu	37	5	32087441	32087441	+	Missense_Mutation	SNP	C	A	A			TCGA-BJ-A0Z9-01A-11D-A10S-08	TCGA-BJ-A0Z9-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	498dad0c-0eb2-47a1-8a9a-819e7e3aa289	f58ba787-903f-4adf-8a27-4378692a9dd0	g.chr5:32087441C>A	uc003jhl.2	+	20	4275	c.3887C>A	c.(3886-3888)GCA>GAA	p.A1296E	PDZD2_uc003jhm.2_Missense_Mutation_p.A1296E	NM_178140	NP_835260	O15018	PDZD2_HUMAN	PDZ domain containing 2	1296					cell adhesion	cell-cell junction|endoplasmic reticulum|extracellular region|nucleus				central_nervous_system(4)|ovary(2)|skin(2)|large_intestine(1)	9						GGGGAGAAAGCAGCGGCTCCC	0.652000													44	79	---	---	---	---	9.85913e-13	1.11231e-12	0.111260	1	0
SPATS1	221409	broad.mit.edu	37	6	44336175	44336175	+	Missense_Mutation	SNP	C	T	T			TCGA-BJ-A0Z9-01A-11D-A10S-08	TCGA-BJ-A0Z9-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	498dad0c-0eb2-47a1-8a9a-819e7e3aa289	f58ba787-903f-4adf-8a27-4378692a9dd0	g.chr6:44336175C>T	uc003oxk.2	+	5	981	c.634C>T	c.(634-636)CCA>TCA	p.P212S	SPATS1_uc003oxg.2_RNA|SPATS1_uc010jzb.2_Missense_Mutation_p.P97S	NM_145026	NP_659463	Q496A3	SPAS1_HUMAN	spermatogenesis associated, serine-rich 1	212										skin(1)	1	all_lung(25;0.00469)|Ovarian(13;0.0273)|all_hematologic(164;0.208)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)			ATATATGTACCCAGAACAGAG	0.378000													29	95	---	---	---	---	0	0	0.134883	0	0
AIM1	202	broad.mit.edu	37	6	106968615	106968615	+	Missense_Mutation	SNP	A	T	T			TCGA-BJ-A0Z9-01A-11D-A10S-08	TCGA-BJ-A0Z9-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	498dad0c-0eb2-47a1-8a9a-819e7e3aa289	f58ba787-903f-4adf-8a27-4378692a9dd0	g.chr6:106968615A>T	uc003prh.2	+	2	2795	c.2308A>T	c.(2308-2310)ATG>TTG	p.M770L		NM_001624	NP_001615	Q9Y4K1	AIM1_HUMAN	absent in melanoma 1	770							sugar binding			breast(4)|ovary(2)|upper_aerodigestive_tract(1)|large_intestine(1)|skin(1)	9	Breast(9;0.0138)|all_epithelial(6;0.169)	all_cancers(87;4.67e-25)|all_epithelial(87;5.46e-21)|Acute lymphoblastic leukemia(125;2.15e-07)|all_hematologic(75;5.28e-06)|Colorectal(196;3.46e-05)|all_lung(197;5.94e-05)|Lung NSC(302;7.26e-05)|Ovarian(999;0.00473)	Epithelial(6;0.00114)|all cancers(7;0.00726)|BRCA - Breast invasive adenocarcinoma(8;0.0114)|OV - Ovarian serous cystadenocarcinoma(5;0.0305)	all cancers(137;1.73e-50)|Epithelial(106;2.42e-48)|OV - Ovarian serous cystadenocarcinoma(136;1.51e-27)|BRCA - Breast invasive adenocarcinoma(108;0.00104)|GBM - Glioblastoma multiforme(226;0.00858)		TTTACATTTGATGCAGAACCT	0.453000													32	64	---	---	---	---	0	0	0.153744	0	0
TAX1BP1	8887	broad.mit.edu	37	7	27856087	27856087	+	Missense_Mutation	SNP	T	A	A			TCGA-BJ-A0Z9-01A-11D-A10S-08	TCGA-BJ-A0Z9-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	498dad0c-0eb2-47a1-8a9a-819e7e3aa289	f58ba787-903f-4adf-8a27-4378692a9dd0	g.chr7:27856087T>A	uc003szl.2	+	14	2042	c.1884T>A	c.(1882-1884)AAT>AAA	p.N628K	TAX1BP1_uc011jzo.1_Intron|TAX1BP1_uc003szk.2_Intron|TAX1BP1_uc011jzp.1_Intron	NM_006024	NP_006015	Q86VP1	TAXB1_HUMAN	Tax1 (human T-cell leukemia virus type I)	628					anti-apoptosis|apoptosis|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production	cytosol	identical protein binding|kinase binding|zinc ion binding			breast(1)	1			GBM - Glioblastoma multiforme(3;0.0823)			CATTGTCAAATGCACAACCAG	0.378000													101	170	---	---	---	---	0	0	0.139131	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-BJ-A0Z9-01A-11D-A10S-08	TCGA-BJ-A0Z9-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	498dad0c-0eb2-47a1-8a9a-819e7e3aa289	f58ba787-903f-4adf-8a27-4378692a9dd0	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				33	74	---	---	---	---	0	0	0.173368	0	0
TRY6	154754	broad.mit.edu	37	7	142479940	142479940	+	Silent	SNP	C	T	T	rs58649169	by1000genomes	TCGA-BJ-A0Z9-01A-11D-A10S-08	TCGA-BJ-A0Z9-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	498dad0c-0eb2-47a1-8a9a-819e7e3aa289	f58ba787-903f-4adf-8a27-4378692a9dd0	g.chr7:142479940C>T	uc011ksq.1	+	2	155	c.72C>T	c.(70-72)ATC>ATT	p.I24I	uc003vzp.2_Intron|uc011ksh.1_Intron|uc011ksi.1_Intron|uc003vzw.1_Intron|uc010loj.1_Intron|uc003wad.2_Intron|uc003wag.1_Intron|TRY6_uc011ksn.1_RNA|uc003wan.1_Intron|TRY6_uc011kso.1_RNA|TRY6_uc011ksr.1_RNA	NR_001296				SubName: Full=Protease, serine, 3; Flags: Fragment;												0						ATGACAAGATCGTTGGGGGCT	0.557000													11	80	---	---	---	---	0	0	0.119110	0	0
ZNF467	168544	broad.mit.edu	37	7	149463284	149463284	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BJ-A0Z9-01A-11D-A10S-08	TCGA-BJ-A0Z9-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	498dad0c-0eb2-47a1-8a9a-819e7e3aa289	f58ba787-903f-4adf-8a27-4378692a9dd0	g.chr7:149463284G>A	uc003wgd.2	-	5	448	c.307C>T	c.(307-309)CAG>TAG	p.Q103*	ZNF467_uc003wgc.2_Intron	NM_207336	NP_997219	Q7Z7K2	ZN467_HUMAN	zinc finger protein 467	103					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			TCTGCCTCCTGATCTTCGTCC	0.542000													18	48	---	---	---	---	0	0	0.062417	0	0
FABP5L3	220832	broad.mit.edu	37	7	152139854	152139854	+	RNA	SNP	A	C	C	rs1972551	by1000genomes	TCGA-BJ-A0Z9-01A-11D-A10S-08	TCGA-BJ-A0Z9-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	498dad0c-0eb2-47a1-8a9a-819e7e3aa289	f58ba787-903f-4adf-8a27-4378692a9dd0	g.chr7:152139854A>C	uc003wlb.2	+	2		c.609A>C				NR_002935				full-length cDNA clone CS0DI054YH06 of Placenta Cot 25-normalized of Homo sapiens (human).												0						TTTGAAGAAAACACAGCTGAT	0.418000													4	37	---	---	---	---	0	0	0.150653	0	0
KIAA1967	57805	broad.mit.edu	37	8	22476665	22476665	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BJ-A0Z9-01A-11D-A10S-08	TCGA-BJ-A0Z9-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	498dad0c-0eb2-47a1-8a9a-819e7e3aa289	f58ba787-903f-4adf-8a27-4378692a9dd0	g.chr8:22476665G>T	uc003xch.2	+	20	2661	c.2524G>T	c.(2524-2526)GAG>TAG	p.E842*	KIAA1967_uc003xci.2_Nonsense_Mutation_p.E842*|KIAA1967_uc003xcj.1_Nonsense_Mutation_p.E511*	NM_199205	NP_954675	Q8N163	K1967_HUMAN	p30 DBC protein	842	Potential.				apoptosis|positive regulation of apoptosis	mitochondrial matrix|nucleus	enzyme binding|enzyme inhibitor activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Prostate(55;0.0421)|Breast(100;0.102)|all_epithelial(46;0.142)		BRCA - Breast invasive adenocarcinoma(99;0.00593)|Colorectal(74;0.0157)|COAD - Colon adenocarcinoma(73;0.064)		CCTTGCAGAGGAGAGCCATAA	0.617000													7	5	---	---	---	---	0.00307968	0.00322633	0.038147	1	0
PXDNL	137902	broad.mit.edu	37	8	52339273	52339273	+	Missense_Mutation	SNP	A	G	G			TCGA-BJ-A0Z9-01A-11D-A10S-08	TCGA-BJ-A0Z9-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	498dad0c-0eb2-47a1-8a9a-819e7e3aa289	f58ba787-903f-4adf-8a27-4378692a9dd0	g.chr8:52339273A>G	uc003xqu.3	-	13	1672	c.1571T>C	c.(1570-1572)GTT>GCT	p.V524A		NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	524	Ig-like C2-type 4.				hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				ATTCTTTCCAACCTCGACACT	0.338000													9	9	---	---	---	---	0	0	0.080935	0	0
KCNV2	169522	broad.mit.edu	37	9	2718725	2718725	+	Missense_Mutation	SNP	G	A	A			TCGA-BJ-A0Z9-01A-11D-A10S-08	TCGA-BJ-A0Z9-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	498dad0c-0eb2-47a1-8a9a-819e7e3aa289	f58ba787-903f-4adf-8a27-4378692a9dd0	g.chr9:2718725G>A	uc003zho.1	+	1	1200	c.986G>A	c.(985-987)CGC>CAC	p.R329H		NM_133497	NP_598004	Q8TDN2	KCNV2_HUMAN	potassium channel, subfamily V, member 2	329	Cytoplasmic (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)|central_nervous_system(1)	2				GBM - Glioblastoma multiforme(50;0.0257)		GACCTGAGGCGCTTCGCGCGC	0.672000													26	69	---	---	---	---	0	0	0.116897	0	0
ARMCX2	9823	broad.mit.edu	37	X	100911988	100911988	+	Missense_Mutation	SNP	C	A	A			TCGA-BJ-A0Z9-01A-11D-A10S-08	TCGA-BJ-A0Z9-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	498dad0c-0eb2-47a1-8a9a-819e7e3aa289	f58ba787-903f-4adf-8a27-4378692a9dd0	g.chrX:100911988C>A	uc004eid.2	-	3	942	c.587G>T	c.(586-588)GGT>GTT	p.G196V	ARMCX2_uc004eie.3_Missense_Mutation_p.G196V|ARMCX2_uc004eif.3_Missense_Mutation_p.G196V|ARMCX2_uc004eig.3_Missense_Mutation_p.G196V|ARMCX2_uc010nnt.2_Missense_Mutation_p.G196V	NM_177949	NP_808818	Q7L311	ARMX2_HUMAN	ALEX2 protein	196	Ala-rich.					integral to membrane	binding			ovary(6)	6						TACCCCAGGACCCTCGGTCAC	0.662000													33	53	---	---	---	---	9.78485e-24	1.1636e-23	0.173368	1	0
Unknown	0	broad.mit.edu	37	1	30196697	30196702	+	IGR	DEL	CAGCAT	-	-	rs72368977	by1000genomes	TCGA-BJ-A0Z9-01A-11D-A10S-08	TCGA-BJ-A0Z9-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	498dad0c-0eb2-47a1-8a9a-819e7e3aa289	f58ba787-903f-4adf-8a27-4378692a9dd0	g.chr1:30196697_30196702delCAGCAT								PTPRU (543382 upstream) : MATN1 (987424 downstream)																							tcaccactaccagcatcaccaacatc	0.000													4	2	---	---	---	---					
Unknown	0	broad.mit.edu	37	1	100288483	100288488	+	IGR	DEL	CCTCTA	-	-	rs115122615		TCGA-BJ-A0Z9-01A-11D-A10S-08	TCGA-BJ-A0Z9-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	498dad0c-0eb2-47a1-8a9a-819e7e3aa289	f58ba787-903f-4adf-8a27-4378692a9dd0	g.chr1:100288483_100288488delCCTCTA								FRRS1 (57134 upstream) : AGL (27152 downstream)																							acctcctcttcctctacctctacctc	0.029													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	1	148855788	148855788	+	IGR	DEL	G	-	-	rs56347163		TCGA-BJ-A0Z9-01A-11D-A10S-08	TCGA-BJ-A0Z9-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	498dad0c-0eb2-47a1-8a9a-819e7e3aa289	f58ba787-903f-4adf-8a27-4378692a9dd0	g.chr1:148855788delG								NBPF16 (97477 upstream) : LOC645166 (72498 downstream)																							ccgcggcggcggggggggcgg	0.388													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	1	198524143	198524143	+	IGR	DEL	T	-	-			TCGA-BJ-A0Z9-01A-11D-A10S-08	TCGA-BJ-A0Z9-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	498dad0c-0eb2-47a1-8a9a-819e7e3aa289	f58ba787-903f-4adf-8a27-4378692a9dd0	g.chr1:198524143delT								ATP6V1G3 (14068 upstream) : PTPRC (83994 downstream)																							tccttccttctttttttcttg	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42400410	42400410	+	IGR	DEL	C	-	-	rs74186261		TCGA-BJ-A0Z9-01A-11D-A10S-08	TCGA-BJ-A0Z9-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	498dad0c-0eb2-47a1-8a9a-819e7e3aa289	f58ba787-903f-4adf-8a27-4378692a9dd0	g.chr10:42400410delC								None (None upstream) : LOC441666 (426905 downstream)																							aacgggatttcttcacataat	0.000													9	76	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	71193238	71193239	+	IGR	INS	-	AC	AC	rs139709581	by1000genomes	TCGA-BJ-A0Z9-01A-11D-A10S-08	TCGA-BJ-A0Z9-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	498dad0c-0eb2-47a1-8a9a-819e7e3aa289	f58ba787-903f-4adf-8a27-4378692a9dd0	g.chr10:71193238_71193239insAC								TACR2 (16564 upstream) : TSPAN15 (17987 downstream)																							TATCTATATCTACACACACACA	0.262													7	2	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	126599282	126599282	+	IGR	DEL	T	-	-			TCGA-BJ-A0Z9-01A-11D-A10S-08	TCGA-BJ-A0Z9-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	498dad0c-0eb2-47a1-8a9a-819e7e3aa289	f58ba787-903f-4adf-8a27-4378692a9dd0	g.chr10:126599282delT								FAM175B (74044 upstream) : ZRANB1 (29690 downstream)																							tctttcttccttttttttttt	0.085													2	4	---	---	---	---					
FNBP4	23360	broad.mit.edu	37	11	47788664	47788669	+	In_Frame_Del	DEL	GGTGGT	-	-	rs59413596		TCGA-BJ-A0Z9-01A-11D-A10S-08	TCGA-BJ-A0Z9-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	498dad0c-0eb2-47a1-8a9a-819e7e3aa289	f58ba787-903f-4adf-8a27-4378692a9dd0	g.chr11:47788664_47788669delGGTGGT	uc009ylv.2	-	1	325_330	c.172_177delACCACC	c.(172-177)ACCACCdel	p.TT58del	FNBP4_uc001ngj.2_5'UTR|FNBP4_uc001ngl.2_RNA	NM_015308	NP_056123	Q8N3X1	FNBP4_HUMAN	formin binding protein 4	58_59										ovary(1)	1						CAGTCACCGCGGTGGTGGTGGTCGTC	0.748													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	11	90671354	90671355	+	IGR	INS	-	T	T	rs55783914		TCGA-BJ-A0Z9-01A-11D-A10S-08	TCGA-BJ-A0Z9-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	498dad0c-0eb2-47a1-8a9a-819e7e3aa289	f58ba787-903f-4adf-8a27-4378692a9dd0	g.chr11:90671354_90671355insT								MIR1261 (68984 upstream) : None (None downstream)																							agaagaaagaaggaaggaagga	0.248													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	12	14408273	14408277	+	IGR	DEL	TTCTC	-	-			TCGA-BJ-A0Z9-01A-11D-A10S-08	TCGA-BJ-A0Z9-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	498dad0c-0eb2-47a1-8a9a-819e7e3aa289	f58ba787-903f-4adf-8a27-4378692a9dd0	g.chr12:14408273_14408277delTTCTC								GRIN2B (275251 upstream) : ATF7IP (110334 downstream)																							CTGGACACTTTTCTCTTCTTTCCTT	0.576													4	2	---	---	---	---					
Unknown	0	broad.mit.edu	37	12	24737258	24737263	+	5'Flank	DEL	CCCCCA	-	-			TCGA-BJ-A0Z9-01A-11D-A10S-08	TCGA-BJ-A0Z9-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	498dad0c-0eb2-47a1-8a9a-819e7e3aa289	f58ba787-903f-4adf-8a27-4378692a9dd0	g.chr12:24737258_24737263delCCCCCA	uc001rgb.1	-											Homo sapiens cDNA FLJ32894 fis, clone TESTI2004994.																		CTTCGATTAGcccccacccccacccc	0.432													4	8	---	---	---	---					
Unknown	0	broad.mit.edu	37	15	76039782	76039782	+	IGR	DEL	A	-	-			TCGA-BJ-A0Z9-01A-11D-A10S-08	TCGA-BJ-A0Z9-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	498dad0c-0eb2-47a1-8a9a-819e7e3aa289	f58ba787-903f-4adf-8a27-4378692a9dd0	g.chr15:76039782delA								DNM1P35 (7280 upstream) : UBE2Q2 (95840 downstream)																							CTAAATAACCaaaaaaaaaaa	0.343													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	15	84957480	84957499	+	IGR	DEL	GGCCCCACATCCATTGAGAA	-	-			TCGA-BJ-A0Z9-01A-11D-A10S-08	TCGA-BJ-A0Z9-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	498dad0c-0eb2-47a1-8a9a-819e7e3aa289	f58ba787-903f-4adf-8a27-4378692a9dd0	g.chr15:84957480_84957499delGGCCCCACATCCATTGAGAA								LOC388152 (58560 upstream) : GOLGA6L5 (90239 downstream)																							TGTGTGCACTGGCCCCACATCCATTGAGAAGGCCCCACAT	0.586													11	12	---	---	---	---					
NANOS3	342977	broad.mit.edu	37	19	13986003	13986003	+	5'Flank	DEL	T	-	-	rs77913995		TCGA-BJ-A0Z9-01A-11D-A10S-08	TCGA-BJ-A0Z9-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	498dad0c-0eb2-47a1-8a9a-819e7e3aa289	f58ba787-903f-4adf-8a27-4378692a9dd0	g.chr19:13986003delT	uc002mxj.3	+							NM_001098622	NP_001092092	P60323	NANO3_HUMAN	nanos homolog 3						anti-apoptosis|germ cell development|multicellular organismal development|oogenesis|regulation of cell cycle|regulation of translation|spermatogenesis	cytoplasmic mRNA processing body|nucleus|stress granule	RNA binding|zinc ion binding			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(19;2e-21)			TAAAATCCCCttttttttttt	0.269													3	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	20	34341658	34341658	+	IGR	DEL	A	-	-			TCGA-BJ-A0Z9-01A-11D-A10S-08	TCGA-BJ-A0Z9-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	498dad0c-0eb2-47a1-8a9a-819e7e3aa289	f58ba787-903f-4adf-8a27-4378692a9dd0	g.chr20:34341658delA								RBM39 (11465 upstream) : PHF20 (18265 downstream)																							GAAATTAtggaaaaaaaaaaa	0.169													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	49104891	49104895	+	IGR	DEL	CATTG	-	-			TCGA-BJ-A0Z9-01A-11D-A10S-08	TCGA-BJ-A0Z9-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	498dad0c-0eb2-47a1-8a9a-819e7e3aa289	f58ba787-903f-4adf-8a27-4378692a9dd0	g.chr4:49104891_49104895delCATTG								CWH43 (40798 upstream) : None (None downstream)																							cattccattccattgcattccattc	0.000													7	23	---	---	---	---					
Unknown	0	broad.mit.edu	37	5	58184883	58184906	+	IGR	DEL	AAGAAAGGAAGGAAGGAAGGAAGG	-	-	rs58863015	by1000genomes	TCGA-BJ-A0Z9-01A-11D-A10S-08	TCGA-BJ-A0Z9-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	498dad0c-0eb2-47a1-8a9a-819e7e3aa289	f58ba787-903f-4adf-8a27-4378692a9dd0	g.chr5:58184883_58184906delAAGAAAGGAAGGAAGGAAGGAAGG								RAB3C (37478 upstream) : PDE4D (79960 downstream)																							gaaagaaagaaagaaaggaaggaaggaaggaaggaaggaaggaa	0.071													5	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	121974926	121974926	+	IGR	DEL	T	-	-	rs77718609		TCGA-BJ-A0Z9-01A-11D-A10S-08	TCGA-BJ-A0Z9-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	498dad0c-0eb2-47a1-8a9a-819e7e3aa289	f58ba787-903f-4adf-8a27-4378692a9dd0	g.chr6:121974926delT								GJA1 (204054 upstream) : HSF2 (745770 downstream)																							GCCCAGTCCCTTCTGGCAGCA	0.547													6	2	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	142790745	142790746	+	IGR	DEL	AC	-	-	rs150002640		TCGA-BJ-A0Z9-01A-11D-A10S-08	TCGA-BJ-A0Z9-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	498dad0c-0eb2-47a1-8a9a-819e7e3aa289	f58ba787-903f-4adf-8a27-4378692a9dd0	g.chr6:142790745_142790746delAC								GPR126 (23344 upstream) : LOC153910 (56846 downstream)																							gCTTCTTGATacacacacacac	0.045													4	2	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	101977571	101977571	+	IGR	DEL	T	-	-			TCGA-BJ-A0Z9-01A-11D-A10S-08	TCGA-BJ-A0Z9-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	498dad0c-0eb2-47a1-8a9a-819e7e3aa289	f58ba787-903f-4adf-8a27-4378692a9dd0	g.chr7:101977571delT								SH2B2 (15394 upstream) : SPDYE6 (8622 downstream)																							CATGGGTCCAttttttttttt	0.139													5	1	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	68414437	68414438	+	RNA	DEL	AG	-	-	rs149419599		TCGA-BJ-A0Z9-01A-11D-A10S-08	TCGA-BJ-A0Z9-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	498dad0c-0eb2-47a1-8a9a-819e7e3aa289	f58ba787-903f-4adf-8a27-4378692a9dd0	g.chr9:68414437_68414438delAG	uc004aex.2	+	1		c.992_993delAG								Homo sapiens mRNA; cDNA DKFZp564N0763 (from clone DKFZp564N0763).																		tggtgactttaggttacagcca	0.000													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	117311135	117311136	+	IGR	INS	-	AGAGAGAG	AGAGAGAG	rs145450413	by1000genomes	TCGA-BJ-A0Z9-01A-11D-A10S-08	TCGA-BJ-A0Z9-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	498dad0c-0eb2-47a1-8a9a-819e7e3aa289	f58ba787-903f-4adf-8a27-4378692a9dd0	g.chr9:117311135_117311136insAGAGAGAG								DFNB31 (43405 upstream) : ATP6V1G1 (38858 downstream)																							agaagagagacagagagagaga	0.025													2	4	---	---	---	---					
USP9X	8239	broad.mit.edu	37	X	41012323	41012324	+	Frame_Shift_Del	DEL	TA	-	-			TCGA-BJ-A0Z9-01A-11D-A10S-08	TCGA-BJ-A0Z9-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	498dad0c-0eb2-47a1-8a9a-819e7e3aa289	f58ba787-903f-4adf-8a27-4378692a9dd0	g.chrX:41012323_41012324delTA	uc004dfb.2	+	14	2519_2520	c.1886_1887delTA	c.(1885-1887)CTAfs	p.L629fs	USP9X_uc004dfc.2_Frame_Shift_Del_p.L629fs	NM_001039590	NP_001034679	Q93008	USP9X_HUMAN	ubiquitin specific protease 9, X-linked isoform	629					BMP signaling pathway|cell division|chromosome segregation|female gamete generation|mitosis|protein deubiquitination|transforming growth factor beta receptor signaling pathway|ubiquitin-dependent protein catabolic process	cytoplasm	co-SMAD binding|cysteine-type endopeptidase activity|ubiquitin thiolesterase activity			lung(3)|breast(2)|ovary(1)	6						AGCATGAGACTATATGCTAGAG	0.342													46	123	---	---	---	---					
NUDT11	55190	broad.mit.edu	37	X	51239296	51239309	+	Translation_Start_Site	DEL	TCCTCGAGGCAGCC	-	-			TCGA-BJ-A0Z9-01A-11D-A10S-08	TCGA-BJ-A0Z9-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	498dad0c-0eb2-47a1-8a9a-819e7e3aa289	f58ba787-903f-4adf-8a27-4378692a9dd0	g.chrX:51239296_51239309delTCCTCGAGGCAGCC	uc010njt.2	-	1						NM_018159	NP_060629	Q96G61	NUD11_HUMAN	nudix-type motif 11							cytoplasm	diphosphoinositol-polyphosphate diphosphatase activity|metal ion binding				0	Ovarian(276;0.236)					TTGCACTTCATCCTCGAGGCAGCCTCCTCGAGGC	0.584										HNSCC(48;0.14)			4	8	---	---	---	---					
Unknown	0	broad.mit.edu	37	X	152871884	152871904	+	IGR	DEL	GTAAAGGGATTTTGTTCACCA	-	-	rs139494223		TCGA-BJ-A0Z9-01A-11D-A10S-08	TCGA-BJ-A0Z9-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	498dad0c-0eb2-47a1-8a9a-819e7e3aa289	f58ba787-903f-4adf-8a27-4378692a9dd0	g.chrX:152871884_152871904delGTAAAGGGATTTTGTTCACCA								FAM58A (7252 upstream) : DUSP9 (35993 downstream)																							ttaaaattaggtaaagggatttTGTTCACCAGTAAAGGGAT	0.271													4	4	---	---	---	---					
