Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
EXOSC10	5394	broad.mit.edu	37	1	11129618	11129618	+	Missense_Mutation	SNP	G	A	A			TCGA-BJ-A0ZH-01A-11D-A10S-08	TCGA-BJ-A0ZH-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7480c602-9209-4768-997b-15b3d2ca1b14	8c99553b-4cbb-4d31-ae3d-dd596a654801	g.chr1:11129618G>A	uc001asa.2	-	22	2536	c.2486C>T	c.(2485-2487)GCT>GTT	p.A829V	EXOSC10_uc001asb.2_Missense_Mutation_p.A804V	NM_001001998	NP_001001998	Q01780	EXOSX_HUMAN	exosome component 10 isoform 1	829					CUT catabolic process|histone mRNA catabolic process|maturation of 5.8S rRNA|nuclear polyadenylation-dependent rRNA catabolic process|nuclear retention of unspliced pre-mRNA at the site of transcription|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	cytoplasm|nuclear exosome (RNase complex)|nucleolus|transcriptionally active chromatin	3'-5' exonuclease activity|exoribonuclease activity|identical protein binding|nucleotide binding|protein serine/threonine kinase activity|RNA binding			upper_aerodigestive_tract(1)	1	Ovarian(185;0.249)	Lung NSC(185;1.74e-05)|all_lung(284;2.05e-05)|Renal(390;0.000147)|Colorectal(325;0.00205)|Breast(348;0.00262)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;4.18e-07)|COAD - Colon adenocarcinoma(227;8.33e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000315)|Kidney(185;0.000832)|KIRC - Kidney renal clear cell carcinoma(229;0.00269)|READ - Rectum adenocarcinoma(331;0.0526)|STAD - Stomach adenocarcinoma(313;0.202)		TTCCTCACCAGCAAAAGCCTT	0.502000													6	624	---	---	---	---	0	0	0.029380	0	0
CGN	57530	broad.mit.edu	37	1	151491515	151491515	+	Missense_Mutation	SNP	C	T	T			TCGA-BJ-A0ZH-01A-11D-A10S-08	TCGA-BJ-A0ZH-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7480c602-9209-4768-997b-15b3d2ca1b14	8c99553b-4cbb-4d31-ae3d-dd596a654801	g.chr1:151491515C>T	uc009wmw.2	+	2	664	c.520C>T	c.(520-522)CCC>TCC	p.P174S		NM_020770	NP_065821	Q9P2M7	CING_HUMAN	cingulin	168	Interacts with ZO-2.|Head.					myosin complex|tight junction	actin binding|motor activity			ovary(2)|pancreas(1)	3	Ovarian(49;0.0273)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		LUSC - Lung squamous cell carcinoma(543;0.181)			TGACACTGCTCCCCTGTCTTC	0.592000													6	171	---	---	---	---	0	0	0.029380	0	0
CCDC19	25790	broad.mit.edu	37	1	159842908	159842908	+	Missense_Mutation	SNP	G	A	A			TCGA-BJ-A0ZH-01A-11D-A10S-08	TCGA-BJ-A0ZH-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7480c602-9209-4768-997b-15b3d2ca1b14	8c99553b-4cbb-4d31-ae3d-dd596a654801	g.chr1:159842908G>A	uc001fui.2	-	11	1421	c.1403C>T	c.(1402-1404)GCC>GTC	p.A468V	CCDC19_uc009wtb.2_RNA|CCDC19_uc001fuj.2_RNA|CCDC19_uc001fuk.2_Missense_Mutation_p.A383V|CCDC19_uc001ful.2_Missense_Mutation_p.A383V	NM_012337	NP_036469	Q9UL16	CCD19_HUMAN	nasopharyngeal epithelium specific protein 1	468	Potential.					mitochondrion|soluble fraction				ovary(1)	1	all_hematologic(112;0.0597)		BRCA - Breast invasive adenocarcinoma(70;0.151)			GCGCCCTGTGGCCTTTTTCTC	0.602000													25	49	---	---	---	---	0	0	0.116897	0	0
LOC441666	441666	broad.mit.edu	37	10	42832426	42832426	+	RNA	SNP	T	C	C			TCGA-BJ-A0ZH-01A-11D-A10S-08	TCGA-BJ-A0ZH-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7480c602-9209-4768-997b-15b3d2ca1b14	8c99553b-4cbb-4d31-ae3d-dd596a654801	g.chr10:42832426T>C	uc010qey.1	-	3		c.1549A>G				NR_024380				Homo sapiens noncoding mRNA sequence.												0						AATTCTCTTGTGTATAGTAAG	0.373000													3	7	---	---	---	---	0	0	0.014758	0	0
LOC441666	441666	broad.mit.edu	37	10	42832431	42832431	+	RNA	SNP	A	G	G			TCGA-BJ-A0ZH-01A-11D-A10S-08	TCGA-BJ-A0ZH-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7480c602-9209-4768-997b-15b3d2ca1b14	8c99553b-4cbb-4d31-ae3d-dd596a654801	g.chr10:42832431A>G	uc010qey.1	-	3		c.1544T>C				NR_024380				Homo sapiens noncoding mRNA sequence.												0						TCTTGTGTATAGTAAGGTTTG	0.373000													3	7	---	---	---	---	0	0	0.009096	0	0
MBL1P	8512	broad.mit.edu	37	10	81667510	81667510	+	RNA	SNP	C	T	T	rs71481541	by1000genomes	TCGA-BJ-A0ZH-01A-11D-A10S-08	TCGA-BJ-A0ZH-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7480c602-9209-4768-997b-15b3d2ca1b14	8c99553b-4cbb-4d31-ae3d-dd596a654801	g.chr10:81667510C>T	uc001kbf.2	+	3		c.448C>T								Homo sapiens mannose-binding protein-A pseudogene (MBL1P1) mRNA sequence.												0						GTAGTGGTGACGGGGCCTCCA	0.448000													4	105	---	---	---	---	0	0	0.009096	0	0
CYP2E1	1571	broad.mit.edu	37	10	135345689	135345689	+	Missense_Mutation	SNP	C	G	G			TCGA-BJ-A0ZH-01A-11D-A10S-08	TCGA-BJ-A0ZH-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7480c602-9209-4768-997b-15b3d2ca1b14	8c99553b-4cbb-4d31-ae3d-dd596a654801	g.chr10:135345689C>G	uc001lnj.1	+	4	582	c.549C>G	c.(547-549)ATC>ATG	p.I183M	CYP2E1_uc001lnk.1_Missense_Mutation_p.I46M|CYP2E1_uc009ybl.1_Translation_Start_Site|CYP2E1_uc009ybm.1_Intron|CYP2E1_uc001lnl.1_Translation_Start_Site	NM_000773	NP_000764	P05181	CP2E1_HUMAN	cytochrome P450, family 2, subfamily E,	183					drug metabolic process|heterocycle metabolic process|monoterpenoid metabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	electron carrier activity|enzyme binding|heme binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen|oxygen binding			central_nervous_system(3)	3		all_cancers(35;1.14e-09)|all_epithelial(44;5.79e-08)|Lung NSC(174;0.00263)|all_lung(145;0.0039)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.172)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;1.12e-06)|all cancers(32;1.43e-06)|Epithelial(32;1.71e-06)	Acetaminophen(DB00316)|Chlorzoxazone(DB00356)|Cinnarizine(DB00568)|Clofibrate(DB00636)|Dacarbazine(DB00851)|Dapsone(DB00250)|Enflurane(DB00228)|Eszopiclone(DB00402)|Ethanol(DB00898)|Ethosuximide(DB00593)|Fomepizole(DB01213)|Glutathione(DB00143)|Halothane(DB01159)|Hexobarbital(DB01355)|Isoflurane(DB00753)|Isoniazid(DB00951)|Menadione(DB00170)|Mephenytoin(DB00532)|Methoxyflurane(DB01028)|Midazolam(DB00683)|Mitoxantrone(DB01204)|Nicotine(DB00184)|Nifedipine(DB01115)|Nitrofurantoin(DB00698)|Orphenadrine(DB01173)|Phenelzine(DB00780)|Quinidine(DB00908)|S-Adenosylmethionine(DB00118)|Sevoflurane(DB01236)|Theophylline(DB00277)|Tolbutamide(DB01124)	TAGCCGACATCCTCTTCCGCA	0.522000									Naso-/Oropharyngeal/Laryngeal_Cancer_Familial_Clustering_of				11	160	---	---	---	---	0	0	0.080935	0	0
LRRC4C	57689	broad.mit.edu	37	11	40137758	40137758	+	Missense_Mutation	SNP	C	T	T			TCGA-BJ-A0ZH-01A-11D-A10S-08	TCGA-BJ-A0ZH-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7480c602-9209-4768-997b-15b3d2ca1b14	8c99553b-4cbb-4d31-ae3d-dd596a654801	g.chr11:40137758C>T	uc001mxa.1	-	2	2049	c.85G>A	c.(85-87)GTG>ATG	p.V29M	LRRC4C_uc001mxc.1_Missense_Mutation_p.V25M|LRRC4C_uc001mxd.1_Missense_Mutation_p.V25M|LRRC4C_uc001mxb.1_Missense_Mutation_p.V25M	NM_020929	NP_065980	Q9HCJ2	LRC4C_HUMAN	netrin-G1 ligand precursor	29					regulation of axonogenesis	integral to membrane	protein binding			ovary(4)|skin(3)|central_nervous_system(1)	8		all_lung(304;0.0575)|Lung NSC(402;0.138)				GCCAGCAGCACCACAAGCAGG	0.498000													12	37	---	---	---	---	0	0	0.093190	0	0
PTPRO	5800	broad.mit.edu	37	12	15636959	15636959	+	Missense_Mutation	SNP	T	C	C			TCGA-BJ-A0ZH-01A-11D-A10S-08	TCGA-BJ-A0ZH-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7480c602-9209-4768-997b-15b3d2ca1b14	8c99553b-4cbb-4d31-ae3d-dd596a654801	g.chr12:15636959T>C	uc001rcv.1	+	2	301	c.127T>C	c.(127-129)TCA>CCA	p.S43P	PTPRO_uc001rcw.1_Missense_Mutation_p.S43P|PTPRO_uc001rcu.1_Missense_Mutation_p.S43P	NM_030667	NP_109592	Q16827	PTPRO_HUMAN	receptor-type protein tyrosine phosphatase O	43	Extracellular (Potential).					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			skin(5)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)	9		Hepatocellular(102;0.244)				CATCGTTGTCTCATTAGAAGC	0.348000													41	104	---	---	---	---	0	0	0.124865	0	0
DENND5B	160518	broad.mit.edu	37	12	31605154	31605154	+	Missense_Mutation	SNP	C	T	T			TCGA-BJ-A0ZH-01A-11D-A10S-08	TCGA-BJ-A0ZH-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7480c602-9209-4768-997b-15b3d2ca1b14	8c99553b-4cbb-4d31-ae3d-dd596a654801	g.chr12:31605154C>T	uc001rki.1	-	5	1535	c.1349G>A	c.(1348-1350)GGC>GAC	p.G450D	DENND5B_uc001rkh.1_Missense_Mutation_p.G485D|DENND5B_uc009zjq.1_Intron|DENND5B_uc001rkj.2_Missense_Mutation_p.G472D|DENND5B_uc001rkk.1_Missense_Mutation_p.G372D	NM_144973	NP_659410	Q6ZUT9	DEN5B_HUMAN	DENN/MADD domain containing 5B	450						integral to membrane				ovary(1)|central_nervous_system(1)	2						GGTTTCATTGCCCTTCAGTAA	0.448000													7	315	---	---	---	---	0	0	0.047766	0	0
BRCA2	675	broad.mit.edu	37	13	32953493	32953493	+	Missense_Mutation	SNP	C	T	T			TCGA-BJ-A0ZH-01A-11D-A10S-08	TCGA-BJ-A0ZH-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7480c602-9209-4768-997b-15b3d2ca1b14	8c99553b-4cbb-4d31-ae3d-dd596a654801	g.chr13:32953493C>T	uc001uub.1	+	22	9021	c.8794C>T	c.(8794-8796)CAC>TAC	p.H2932Y		NM_000059	NP_000050	P51587	BRCA2_HUMAN	breast cancer 2, early onset	2932					cell cycle cytokinesis|centrosome duplication|double-strand break repair via homologous recombination|negative regulation of mammary gland epithelial cell proliferation|nucleotide-excision repair|positive regulation of transcription, DNA-dependent|regulation of S phase of mitotic cell cycle	BRCA2-MAGE-D1 complex|centrosome|nucleoplasm|stored secretory granule	gamma-tubulin binding|H3 histone acetyltransferase activity|H4 histone acetyltransferase activity|protease binding|single-stranded DNA binding			ovary(20)|endometrium(8)|lung(7)|breast(7)|oesophagus(5)|large_intestine(4)|central_nervous_system(3)|pancreas(3)|skin(2)|upper_aerodigestive_tract(1)|cervix(1)|salivary_gland(1)|liver(1)|kidney(1)	64		Lung SC(185;0.0262)		all cancers(112;7.13e-07)|Epithelial(112;1.59e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.000732)|BRCA - Breast invasive adenocarcinoma(63;0.0291)|GBM - Glioblastoma multiforme(144;0.0704)		CTTGAATAATCACAGGCAAAT	0.363000			D|Mis|N|F|S		breast|ovarian|pancreatic	breast|ovarian|pancreatic|leukemia  (FANCB|FANCD1)		Direct_reversal_of_damage|Homologous_recombination	Fanconi_Anemia_type_D1_bi-allelic_BRCA2_mutations|Fanconi_Anemia|Pancreatic_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_BRCA2_type|Hereditary_Prostate_Cancer|Li-Fraumeni_syndrome	TCGA Ovarian(8;0.087)			9	73	---	---	---	---	0	0	0.069234	0	0
CBLN3	643866	broad.mit.edu	37	14	24897090	24897090	+	Missense_Mutation	SNP	G	A	A			TCGA-BJ-A0ZH-01A-11D-A10S-08	TCGA-BJ-A0ZH-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7480c602-9209-4768-997b-15b3d2ca1b14	8c99553b-4cbb-4d31-ae3d-dd596a654801	g.chr14:24897090G>A	uc001wpg.3	-	3	994	c.523C>T	c.(523-525)CCT>TCT	p.P175S	KHNYN_uc010tpc.1_5'Flank|KHNYN_uc001wph.3_5'Flank|KHNYN_uc010alw.2_5'Flank	NM_001039771	NP_001034860	Q6UW01	CBLN3_HUMAN	cerebellin 3 precursor	175	Necessary for interaction with CBLN3, and homotrimerization (By similarity).|C1q.					cell junction|extracellular region|synapse				central_nervous_system(1)	1				GBM - Glioblastoma multiforme(265;0.00159)		CGGTCCCCAGGGTCCAAGGGC	0.587000													7	196	---	---	---	---	0	0	0.038147	0	0
ERO1L	30001	broad.mit.edu	37	14	53150513	53150513	+	Missense_Mutation	SNP	T	C	C			TCGA-BJ-A0ZH-01A-11D-A10S-08	TCGA-BJ-A0ZH-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7480c602-9209-4768-997b-15b3d2ca1b14	8c99553b-4cbb-4d31-ae3d-dd596a654801	g.chr14:53150513T>C	uc001wzv.2	-	2	453	c.227A>G	c.(226-228)TAT>TGT	p.Y76C	ERO1L_uc001wzw.2_RNA|ERO1L_uc010aof.2_RNA	NM_014584	NP_055399	Q96HE7	ERO1A_HUMAN	ERO1-like precursor	76					chaperone mediated protein folding requiring cofactor|electron transport chain|protein thiol-disulfide exchange|response to temperature stimulus|transport	endoplasmic reticulum lumen|endoplasmic reticulum membrane|microsome	disulfide oxidoreductase activity|flavin adenine dinucleotide binding|oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor				0	Breast(41;0.226)					taCCTTGTAATACCTAAAGTA	0.259000													3	33	---	---	---	---	0	0	0.115264	0	0
TTC8	123016	broad.mit.edu	37	14	89319349	89319349	+	Missense_Mutation	SNP	C	G	G			TCGA-BJ-A0ZH-01A-11D-A10S-08	TCGA-BJ-A0ZH-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7480c602-9209-4768-997b-15b3d2ca1b14	8c99553b-4cbb-4d31-ae3d-dd596a654801	g.chr14:89319349C>G	uc010ath.2	+	8	841	c.707C>G	c.(706-708)TCT>TGT	p.S236C	TTC8_uc010atg.1_RNA|TTC8_uc001xxl.2_5'UTR|TTC8_uc010ati.2_Missense_Mutation_p.S22C|TTC8_uc001xxm.2_Missense_Mutation_p.S180C|TTC8_uc010atj.2_Intron|TTC8_uc001xxi.2_Missense_Mutation_p.S220C|TTC8_uc001xxj.2_Missense_Mutation_p.S210C|TTC8_uc001xxk.2_Missense_Mutation_p.S180C	NM_198309	NP_938051	Q8TAM2	TTC8_HUMAN	tetratricopeptide repeat domain 8 isoform B	246					cilium assembly|establishment of anatomical structure orientation|sensory processing	BBSome|centrosome|cilium membrane|microtubule basal body	protein binding				0						ACAGAACATTCTCAGTACAAG	0.363000									Bardet-Biedl_syndrome				31	65	---	---	---	---	0	0	0.059317	0	0
SLC6A10P	386757	broad.mit.edu	37	16	32890622	32890622	+	Missense_Mutation	SNP	T	G	G			TCGA-BJ-A0ZH-01A-11D-A10S-08	TCGA-BJ-A0ZH-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7480c602-9209-4768-997b-15b3d2ca1b14	8c99553b-4cbb-4d31-ae3d-dd596a654801	g.chr16:32890622T>G	uc002edh.1	-	5	440	c.264A>C	c.(262-264)AAA>AAC	p.K88N	SLC6A10P_uc002edi.1_RNA					RecName: Full=Transporter;												0						CGTTGGTGTTTTTGTAGACCA	0.512000													3	30	---	---	---	---	0	0	0.014758	0	0
GPR56	9289	broad.mit.edu	37	16	57695714	57695714	+	Silent	SNP	C	T	T			TCGA-BJ-A0ZH-01A-11D-A10S-08	TCGA-BJ-A0ZH-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7480c602-9209-4768-997b-15b3d2ca1b14	8c99553b-4cbb-4d31-ae3d-dd596a654801	g.chr16:57695714C>T	uc002emb.2	+	14	2080	c.1788C>T	c.(1786-1788)ATC>ATT	p.I596I	GPR56_uc002ema.1_Silent_p.I421I|GPR56_uc002emc.2_Silent_p.I590I|GPR56_uc002emf.2_Silent_p.I590I|GPR56_uc010vhs.1_Silent_p.I596I|GPR56_uc002emd.2_Silent_p.I590I|GPR56_uc002eme.2_Silent_p.I590I|GPR56_uc010vht.1_Silent_p.I595I|GPR56_uc002emg.3_Silent_p.I590I|GPR56_uc010vhu.1_Silent_p.I415I	NM_005682	NP_005673	Q9Y653	GPR56_HUMAN	G protein-coupled receptor 56 isoform a	596	Helical; Name=5; (Potential).				brain development|cell adhesion|cell-cell signaling|neuropeptide signaling pathway	integral to plasma membrane	G-protein coupled receptor activity				0						TGGTGCAGATCCTGCGGCTGC	0.602000													4	118	---	---	---	---	0	0	0.014758	0	0
TUSC5	286753	broad.mit.edu	37	17	1198817	1198817	+	Silent	SNP	C	T	T			TCGA-BJ-A0ZH-01A-11D-A10S-08	TCGA-BJ-A0ZH-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7480c602-9209-4768-997b-15b3d2ca1b14	8c99553b-4cbb-4d31-ae3d-dd596a654801	g.chr17:1198817C>T	uc002fsi.1	+	2	759	c.420C>T	c.(418-420)GAC>GAT	p.D140D		NM_172367	NP_758955	Q8IXB3	TUSC5_HUMAN	LOST1	140					response to biotic stimulus	integral to membrane				skin(2)	2				UCEC - Uterine corpus endometrioid carcinoma (25;0.0822)		GCAACGTGGACGGCGCCCGGA	0.622000													13	226	---	---	---	---	0	0	0.132662	0	0
LUC7L3	51747	broad.mit.edu	37	17	48823271	48823271	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BJ-A0ZH-01A-11D-A10S-08	TCGA-BJ-A0ZH-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7480c602-9209-4768-997b-15b3d2ca1b14	8c99553b-4cbb-4d31-ae3d-dd596a654801	g.chr17:48823271C>A	uc002isr.2	+	8	1001	c.884C>A	c.(883-885)TCA>TAA	p.S295*	LUC7L3_uc010wmw.1_Nonsense_Mutation_p.S219*|LUC7L3_uc002isq.2_Nonsense_Mutation_p.S295*|LUC7L3_uc002iss.2_Nonsense_Mutation_p.S295*	NM_006107	NP_006098	O95232	LC7L3_HUMAN	LUC7-like 3	295	Arg/Ser-rich.				apoptosis|mRNA processing|response to stress|RNA splicing	focal adhesion|nuclear speck	DNA binding|mRNA binding|protein binding				0						AGAAGTCGTTCACGAAGTAGA	0.328000													6	17	---	---	---	---	2.7689e-08	3.41694e-08	0.029380	1	0
MUC16	94025	broad.mit.edu	37	19	9011326	9011326	+	Silent	SNP	G	C	C			TCGA-BJ-A0ZH-01A-11D-A10S-08	TCGA-BJ-A0ZH-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7480c602-9209-4768-997b-15b3d2ca1b14	8c99553b-4cbb-4d31-ae3d-dd596a654801	g.chr19:9011326G>C	uc002mkp.2	-	36	39111	c.38907C>G	c.(38905-38907)GTC>GTG	p.V12969V	MUC16_uc010xki.1_Intron	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	12971	SEA 6.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTTCACCATTGACATAGAGAC	0.537000													9	283	---	---	---	---	0	0	0.069234	0	0
ZNF146	7705	broad.mit.edu	37	19	36727354	36727354	+	Silent	SNP	C	T	T			TCGA-BJ-A0ZH-01A-11D-A10S-08	TCGA-BJ-A0ZH-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7480c602-9209-4768-997b-15b3d2ca1b14	8c99553b-4cbb-4d31-ae3d-dd596a654801	g.chr19:36727354C>T	uc002odq.3	+	4	1535	c.12C>T	c.(10-12)CTC>CTT	p.L4L	ZNF146_uc010eet.2_Silent_p.L4L|ZNF146_uc010eeu.2_Silent_p.L4L	NM_007145	NP_009076	Q15072	OZF_HUMAN	zinc finger protein 146	4					regulation of transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|heparin binding|zinc ion binding				0	Esophageal squamous(110;0.162)					TGTCACACCTCAGCCAGCAGA	0.418000													4	69	---	---	---	---	0	0	0.009096	0	0
ZNF28	7576	broad.mit.edu	37	19	53303160	53303160	+	Missense_Mutation	SNP	C	G	G			TCGA-BJ-A0ZH-01A-11D-A10S-08	TCGA-BJ-A0ZH-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7480c602-9209-4768-997b-15b3d2ca1b14	8c99553b-4cbb-4d31-ae3d-dd596a654801	g.chr19:53303160C>G	uc002qad.2	-	4	2058	c.1938G>C	c.(1936-1938)CAG>CAC	p.Q646H	ZNF28_uc002qac.2_Missense_Mutation_p.Q593H|ZNF28_uc010eqe.2_Missense_Mutation_p.Q592H	NM_006969	NP_008900	P17035	ZNF28_HUMAN	zinc finger protein 28	646	C2H2-type 16.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1				GBM - Glioblastoma multiforme(134;0.0386)|Lung(386;0.145)		GGGATGACATCTGACTGAAGG	0.433000													15	354	---	---	---	---	0	0	0.033300	0	0
ZNF28	7576	broad.mit.edu	37	19	53304746	53304746	+	Missense_Mutation	SNP	C	G	G			TCGA-BJ-A0ZH-01A-11D-A10S-08	TCGA-BJ-A0ZH-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7480c602-9209-4768-997b-15b3d2ca1b14	8c99553b-4cbb-4d31-ae3d-dd596a654801	g.chr19:53304746C>G	uc002qad.2	-	4	472	c.352G>C	c.(352-354)GAG>CAG	p.E118Q	ZNF28_uc002qac.2_Missense_Mutation_p.E65Q|ZNF28_uc010eqe.2_Missense_Mutation_p.E64Q	NM_006969	NP_008900	P17035	ZNF28_HUMAN	zinc finger protein 28	118					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1				GBM - Glioblastoma multiforme(134;0.0386)|Lung(386;0.145)		CCAGTCAACTCTTTGATTTCT	0.403000													15	459	---	---	---	---	0	0	0.119110	0	0
ZNF28	7576	broad.mit.edu	37	19	53304776	53304776	+	Missense_Mutation	SNP	C	G	G			TCGA-BJ-A0ZH-01A-11D-A10S-08	TCGA-BJ-A0ZH-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7480c602-9209-4768-997b-15b3d2ca1b14	8c99553b-4cbb-4d31-ae3d-dd596a654801	g.chr19:53304776C>G	uc002qad.2	-	4	442	c.322G>C	c.(322-324)GAC>CAC	p.D108H	ZNF28_uc002qac.2_Missense_Mutation_p.D55H|ZNF28_uc010eqe.2_Missense_Mutation_p.D54H	NM_006969	NP_008900	P17035	ZNF28_HUMAN	zinc finger protein 28	108					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1				GBM - Glioblastoma multiforme(134;0.0386)|Lung(386;0.145)		GCTGCATGGTCATTTGTTTCA	0.408000													12	442	---	---	---	---	0	0	0.093190	0	0
FRG1B	284802	broad.mit.edu	37	20	29628245	29628245	+	Missense_Mutation	SNP	G	A	A			TCGA-BJ-A0ZH-01A-11D-A10S-08	TCGA-BJ-A0ZH-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7480c602-9209-4768-997b-15b3d2ca1b14	8c99553b-4cbb-4d31-ae3d-dd596a654801	g.chr20:29628245G>A	uc010ztl.1	+	3	189	c.157G>A	c.(157-159)GCC>ACC	p.A53T	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Missense_Mutation_p.A5T					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						GGCTTTGTTGGCCTCAAATAG	0.353000													5	189	---	---	---	---	0	0	0.021553	0	0
MOCS3	27304	broad.mit.edu	37	20	49575532	49575532	+	Silent	SNP	G	A	A			TCGA-BJ-A0ZH-01A-11D-A10S-08	TCGA-BJ-A0ZH-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7480c602-9209-4768-997b-15b3d2ca1b14	8c99553b-4cbb-4d31-ae3d-dd596a654801	g.chr20:49575532G>A	uc002xvy.1	+	1	170	c.153G>A	c.(151-153)CCG>CCA	p.P51P	DPM1_uc002xvw.1_5'Flank|DPM1_uc002xvx.1_5'Flank	NM_014484	NP_055299	O95396	MOCS3_HUMAN	molybdenum cofactor synthesis 3	51					enzyme active site formation via L-cysteine persulfide|Mo-molybdopterin cofactor biosynthetic process|tRNA thio-modification|tRNA wobble uridine modification|water-soluble vitamin metabolic process	cytosol	ATP binding|metal ion binding|nucleotidyltransferase activity|protein binding|thiosulfate sulfurtransferase activity|URM1 activating enzyme activity			skin(2)|ovary(1)	3						CGCTGCCGCCGAAGGCCGCTC	0.652000													4	89	---	---	---	---	0	0	0.029380	0	0
LOC96610	96610	broad.mit.edu	37	22	22664606	22664606	+	RNA	SNP	A	G	G			TCGA-BJ-A0ZH-01A-11D-A10S-08	TCGA-BJ-A0ZH-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7480c602-9209-4768-997b-15b3d2ca1b14	8c99553b-4cbb-4d31-ae3d-dd596a654801	g.chr22:22664606A>G	uc011aim.1	+	31		c.2121A>G			LOC96610_uc011aiq.1_RNA					Parts of antibodies, mostly variable regions.												0						GTCTTCATGCAAACTTGGTAT	0.398000													3	35	---	---	---	---	0	0	0.115264	0	0
PLCD1	5333	broad.mit.edu	37	3	38061700	38061700	+	Missense_Mutation	SNP	G	A	A			TCGA-BJ-A0ZH-01A-11D-A10S-08	TCGA-BJ-A0ZH-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7480c602-9209-4768-997b-15b3d2ca1b14	8c99553b-4cbb-4d31-ae3d-dd596a654801	g.chr3:38061700G>A	uc003chn.2	-	2	302	c.178C>T	c.(178-180)CGG>TGG	p.R60W	PLCD1_uc003chm.2_Missense_Mutation_p.R81W	NM_006225	NP_006216	P51178	PLCD1_HUMAN	phospholipase C, delta 1 isoform 2	60	PH.				intracellular signal transduction|lipid catabolic process|phospholipid metabolic process	cytoplasm	calcium ion binding|GTPase activating protein binding|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0519)|Kidney(284;0.0653)		TCCGGGGTCCGCATGACCTTG	0.582000													4	189	---	---	---	---	0	0	0.009096	0	0
SETD2	29072	broad.mit.edu	37	3	47162712	47162712	+	Missense_Mutation	SNP	C	G	G			TCGA-BJ-A0ZH-01A-11D-A10S-08	TCGA-BJ-A0ZH-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7480c602-9209-4768-997b-15b3d2ca1b14	8c99553b-4cbb-4d31-ae3d-dd596a654801	g.chr3:47162712C>G	uc003cqs.2	-	3	3467	c.3414G>C	c.(3412-3414)GAG>GAC	p.E1138D	SETD2_uc003cqv.2_Missense_Mutation_p.E1127D	NM_014159	NP_054878	Q9BYW2	SETD2_HUMAN	SET domain containing 2	1138					regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleus	DNA binding|histone-lysine N-methyltransferase activity|oxidoreductase activity|transition metal ion binding			kidney(24)|ovary(5)|skin(1)|central_nervous_system(1)|breast(1)	32		Acute lymphoblastic leukemia(5;0.0169)		BRCA - Breast invasive adenocarcinoma(193;0.000302)|KIRC - Kidney renal clear cell carcinoma(197;0.00732)|Kidney(197;0.00844)		CCGGATTCTTCTCTGTTCCTT	0.373000			N|F|S|Mis		clear cell renal carcinoma								12	220	---	---	---	---	0	0	0.080935	0	0
SPARCL1	8404	broad.mit.edu	37	4	88415391	88415391	+	Missense_Mutation	SNP	A	T	T			TCGA-BJ-A0ZH-01A-11D-A10S-08	TCGA-BJ-A0ZH-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7480c602-9209-4768-997b-15b3d2ca1b14	8c99553b-4cbb-4d31-ae3d-dd596a654801	g.chr4:88415391A>T	uc010ikm.2	-	5	1133	c.561T>A	c.(559-561)GAT>GAA	p.D187E	SPARCL1_uc011cdc.1_Missense_Mutation_p.D62E|SPARCL1_uc003hqs.3_Missense_Mutation_p.D187E|SPARCL1_uc011cdd.1_Missense_Mutation_p.D62E|SPARCL1_uc003hqt.2_Missense_Mutation_p.D187E	NM_001128310	NP_001121782	Q14515	SPRL1_HUMAN	SPARC-like 1 precursor	187					signal transduction	extracellular space|proteinaceous extracellular matrix	calcium ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(123;0.00118)		GGTTTCCTTGATCCCTTAGGC	0.398000													8	577	---	---	---	---	0	0	0.058154	0	0
GHR	2690	broad.mit.edu	37	5	42718766	42718766	+	Missense_Mutation	SNP	G	A	A			TCGA-BJ-A0ZH-01A-11D-A10S-08	TCGA-BJ-A0ZH-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7480c602-9209-4768-997b-15b3d2ca1b14	8c99553b-4cbb-4d31-ae3d-dd596a654801	g.chr5:42718766G>A	uc003jmt.2	+	10	1200	c.1157G>A	c.(1156-1158)CGT>CAT	p.R386H	GHR_uc011cpq.1_Missense_Mutation_p.R199H	NM_000163	NP_000154	P10912	GHR_HUMAN	growth hormone receptor precursor	386	Cytoplasmic (Potential).				2-oxoglutarate metabolic process|activation of JAK2 kinase activity|activation of MAPK activity|allantoin metabolic process|citrate metabolic process|creatine metabolic process|creatinine metabolic process|endocytosis|fatty acid metabolic process|growth hormone receptor signaling pathway|insulin-like growth factor receptor signaling pathway|isoleucine metabolic process|JAK-STAT cascade|multicellular organismal metabolic process|oxaloacetate metabolic process|positive regulation of multicellular organism growth|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|receptor internalization|response to cycloheximide|response to estradiol stimulus|succinate metabolic process|taurine metabolic process|valine metabolic process	cell surface|extracellular space|growth hormone receptor complex|integral to plasma membrane	growth factor binding|peptide hormone binding|proline-rich region binding|protein homodimerization activity|protein kinase binding			lung(4)|kidney(1)|skin(1)	6		Myeloproliferative disorder(839;0.00878)			Pegvisomant(DB00082)|Somatropin recombinant(DB00052)	GACTCTGGACGTACCAGCTGT	0.473000													6	169	---	---	---	---	0	0	0.021553	0	0
CNOT6	57472	broad.mit.edu	37	5	179996203	179996203	+	Missense_Mutation	SNP	T	C	C			TCGA-BJ-A0ZH-01A-11D-A10S-08	TCGA-BJ-A0ZH-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7480c602-9209-4768-997b-15b3d2ca1b14	8c99553b-4cbb-4d31-ae3d-dd596a654801	g.chr5:179996203T>C	uc003mlx.2	+	10	1470	c.1121T>C	c.(1120-1122)GTA>GCA	p.V374A	CNOT6_uc010jld.2_Missense_Mutation_p.V374A|CNOT6_uc010jle.2_Missense_Mutation_p.V369A	NM_015455	NP_056270	Q9ULM6	CNOT6_HUMAN	CCR4-NOT transcription complex, subunit 6	374					nuclear-transcribed mRNA poly(A) tail shortening|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nucleus	exonuclease activity|metal ion binding|protein binding|RNA binding				0	all_cancers(89;3.3e-05)|all_epithelial(37;7.38e-06)|Renal(175;0.000159)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.114)	all_cancers(40;0.00543)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	OV - Ovarian serous cystadenocarcinoma(192;0.023)		GTGAAGTTGGTACAAACTATG	0.413000													3	157	---	---	---	---	0	0	0.009096	0	0
DSP	1832	broad.mit.edu	37	6	7585761	7585761	+	Missense_Mutation	SNP	A	G	G			TCGA-BJ-A0ZH-01A-11D-A10S-08	TCGA-BJ-A0ZH-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7480c602-9209-4768-997b-15b3d2ca1b14	8c99553b-4cbb-4d31-ae3d-dd596a654801	g.chr6:7585761A>G	uc003mxp.1	+	24	8545	c.8266A>G	c.(8266-8268)ATA>GTA	p.I2756V	DSP_uc003mxq.1_Missense_Mutation_p.I2157V	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	2756	Plectin 16.|Globular 2.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		GAAGGGGTTCATAGATGGCCG	0.537000													5	152	---	---	---	---	0	0	0.014758	0	0
NOD1	10392	broad.mit.edu	37	7	30491380	30491380	+	Silent	SNP	C	A	A			TCGA-BJ-A0ZH-01A-11D-A10S-08	TCGA-BJ-A0ZH-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7480c602-9209-4768-997b-15b3d2ca1b14	8c99553b-4cbb-4d31-ae3d-dd596a654801	g.chr7:30491380C>A	uc003tav.2	-	6	2176	c.1653G>T	c.(1651-1653)GCG>GCT	p.A551A		NM_006092	NP_006083	Q9Y239	NOD1_HUMAN	nucleotide-binding oligomerization domain	551					activation of MAPK activity|detection of bacterium|induction of apoptosis|inflammatory response|innate immune response|interleukin-8 biosynthetic process|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of dendritic cell antigen processing and presentation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|protein oligomerization|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	basolateral plasma membrane|cytosol	ATP binding|CARD domain binding|caspase activator activity|peptidoglycan binding|protein homodimerization activity			ovary(1)|skin(1)	2						TCGCTGCCCCCGCAGGGGGCA	0.622000													4	177	---	---	---	---	0.00024832	0.000300053	0.009096	1	0
PARP12	64761	broad.mit.edu	37	7	139757774	139757774	+	Silent	SNP	A	G	G			TCGA-BJ-A0ZH-01A-11D-A10S-08	TCGA-BJ-A0ZH-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7480c602-9209-4768-997b-15b3d2ca1b14	8c99553b-4cbb-4d31-ae3d-dd596a654801	g.chr7:139757774A>G	uc003vvl.1	-	2	1261	c.387T>C	c.(385-387)ACT>ACC	p.T129T	PARP12_uc003vvk.1_5'Flank|PARP12_uc010lnf.1_RNA	NM_022750	NP_073587	Q9H0J9	PAR12_HUMAN	poly ADP-ribose polymerase 12	129						nucleus	NAD+ ADP-ribosyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)	3	Melanoma(164;0.0142)					CAACGCCATGAGTTCTCAGCA	0.453000													3	170	---	---	---	---	0	0	0.115264	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-BJ-A0ZH-01A-11D-A10S-08	TCGA-BJ-A0ZH-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7480c602-9209-4768-997b-15b3d2ca1b14	8c99553b-4cbb-4d31-ae3d-dd596a654801	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				33	71	---	---	---	---	0	0	0.059317	0	0
CNTLN	54875	broad.mit.edu	37	9	17395016	17395016	+	Missense_Mutation	SNP	A	G	G			TCGA-BJ-A0ZH-01A-11D-A10S-08	TCGA-BJ-A0ZH-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7480c602-9209-4768-997b-15b3d2ca1b14	8c99553b-4cbb-4d31-ae3d-dd596a654801	g.chr9:17395016A>G	uc003zmz.2	+	15	2590	c.2564A>G	c.(2563-2565)AAT>AGT	p.N855S	CNTLN_uc003zmy.2_Missense_Mutation_p.N855S|CNTLN_uc010mio.2_Missense_Mutation_p.N534S	NM_017738	NP_060208	Q9NXG0	CNTLN_HUMAN	centlein isoform 1	855						centriole|membrane	two-component sensor activity			pancreas(1)	1				GBM - Glioblastoma multiforme(50;6.14e-10)		GTTATGAGCAATGTGTTTGAG	0.453000													3	103	---	---	---	---	0	0	0.009096	0	0
PIGO	84720	broad.mit.edu	37	9	35092632	35092632	+	Missense_Mutation	SNP	C	T	T			TCGA-BJ-A0ZH-01A-11D-A10S-08	TCGA-BJ-A0ZH-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7480c602-9209-4768-997b-15b3d2ca1b14	8c99553b-4cbb-4d31-ae3d-dd596a654801	g.chr9:35092632C>T	uc003zwd.2	-	7	1648	c.1252G>A	c.(1252-1254)GAG>AAG	p.E418K	PIGO_uc003zwc.1_3'UTR|PIGO_uc003zwe.2_Missense_Mutation_p.E418K|PIGO_uc003zwf.2_Missense_Mutation_p.E418K|PIGO_uc003zwg.1_5'UTR	NM_032634	NP_116023	Q8TEQ8	PIGO_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	418					C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane	transferase activity			large_intestine(1)|ovary(1)|skin(1)	3			LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)			AGTGTCGCCTCAGCCCCCTTG	0.587000													17	67	---	---	---	---	0	0	0.038395	0	0
CTSL3	392360	broad.mit.edu	37	9	90401768	90401768	+	Missense_Mutation	SNP	G	A	A			TCGA-BJ-A0ZH-01A-11D-A10S-08	TCGA-BJ-A0ZH-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7480c602-9209-4768-997b-15b3d2ca1b14	8c99553b-4cbb-4d31-ae3d-dd596a654801	g.chr9:90401768G>A	uc004apm.1	+	5	626	c.620G>A	c.(619-621)AGG>AAG	p.R207K		NR_027917				RecName: Full=Putative cathepsin L-like protein 3;          Short=Cathepsin L-like protein; AltName: Full=HCTSL-s;											ovary(1)	1						CATGACATGAGGAATCATCTG	0.498000													11	98	---	---	---	---	0	0	0.105934	0	0
OR13F1	138805	broad.mit.edu	37	9	107266544	107266544	+	Missense_Mutation	SNP	A	G	G			TCGA-BJ-A0ZH-01A-11D-A10S-08	TCGA-BJ-A0ZH-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7480c602-9209-4768-997b-15b3d2ca1b14	8c99553b-4cbb-4d31-ae3d-dd596a654801	g.chr9:107266544A>G	uc011lvm.1	+	1	1	c.1A>G	c.(1-3)ATG>GTG	p.M1V		NM_001004485	NP_001004485	Q8NGS4	O13F1_HUMAN	olfactory receptor, family 13, subfamily F,	1	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)|skin(1)	3						ACATAAAAAAATGTTCCCGGC	0.368000													10	90	---	---	---	---	0	0	0.058154	0	0
PTGES2	80142	broad.mit.edu	37	9	130885238	130885238	+	Missense_Mutation	SNP	G	C	C			TCGA-BJ-A0ZH-01A-11D-A10S-08	TCGA-BJ-A0ZH-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7480c602-9209-4768-997b-15b3d2ca1b14	8c99553b-4cbb-4d31-ae3d-dd596a654801	g.chr9:130885238G>C	uc004bti.2	-	5	1340	c.862C>G	c.(862-864)CTC>GTC	p.L288V	PTGES2_uc004btj.2_RNA|PTGES2_uc004btk.2_Missense_Mutation_p.L97V|PTGES2_uc004btl.2_Missense_Mutation_p.L97V|PTGES2_uc004btm.2_RNA	NM_025072	NP_079348	Q9H7Z7	PGES2_HUMAN	prostaglandin E synthase 2	288	GST C-terminal.|Cytoplasmic (Potential).				cell redox homeostasis|prostaglandin biosynthetic process	Golgi membrane|integral to membrane|mitochondrion|perinuclear region of cytoplasm	electron carrier activity|prostaglandin-E synthase activity|protein binding|protein disulfide oxidoreductase activity				0						TTGCTGATGAGGTACATGGCC	0.627000													4	86	---	---	---	---	0	0	0.014758	0	0
ARSH	347527	broad.mit.edu	37	X	2947386	2947386	+	Missense_Mutation	SNP	C	G	G			TCGA-BJ-A0ZH-01A-11D-A10S-08	TCGA-BJ-A0ZH-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7480c602-9209-4768-997b-15b3d2ca1b14	8c99553b-4cbb-4d31-ae3d-dd596a654801	g.chrX:2947386C>G	uc011mhj.1	+	8	1298	c.1298C>G	c.(1297-1299)ACG>AGG	p.T433R		NM_001011719	NP_001011719	Q5FYA8	ARSH_HUMAN	arylsulfatase family, member H	433						integral to membrane	arylsulfatase activity|metal ion binding			lung(1)	1		all_cancers(21;9e-05)|all_epithelial(21;6.22e-06)|all_lung(23;0.000597)|Lung NSC(23;0.00901)|Lung SC(21;0.186)				TATCTGCACACGGTCAGGTGG	0.572000													3	222	---	---	---	---	0	0	0.115264	0	0
SSX8	280659	broad.mit.edu	37	X	52662529	52662529	+	RNA	SNP	A	G	G	rs150583046	by1000genomes	TCGA-BJ-A0ZH-01A-11D-A10S-08	TCGA-BJ-A0ZH-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7480c602-9209-4768-997b-15b3d2ca1b14	8c99553b-4cbb-4d31-ae3d-dd596a654801	g.chrX:52662529A>G	uc011mob.1	+	8		c.978A>G				NR_027250				Homo sapiens cDNA FLJ56587 complete cds, highly similar to Protein SSX8.												0						TGTTCACAACAGTGAAAAGTT	0.438000													3	29	---	---	---	---	0	0	0.009096	0	0
GPRASP1	9737	broad.mit.edu	37	X	101910801	101910801	+	Missense_Mutation	SNP	A	T	T			TCGA-BJ-A0ZH-01A-11D-A10S-08	TCGA-BJ-A0ZH-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7480c602-9209-4768-997b-15b3d2ca1b14	8c99553b-4cbb-4d31-ae3d-dd596a654801	g.chrX:101910801A>T	uc004ejj.3	+	5	2761	c.1960A>T	c.(1960-1962)ATG>TTG	p.M654L	GPRASP1_uc004eji.3_Missense_Mutation_p.M654L|GPRASP1_uc010nod.2_Missense_Mutation_p.M654L	NM_014710	NP_055525	Q5JY77	GASP1_HUMAN	G protein-coupled receptor associated sorting	654	Glu-rich.					cytoplasm	protein binding			ovary(1)|lung(1)	2						AGAGGTCAGTATGAAGCATGG	0.478000													11	238	---	---	---	---	0	0	0.069234	0	0
Unknown	0	broad.mit.edu	37	1	82617208	82617231	+	IGR	DEL	AAGGAAGAAAGGAAGGAAGGAAGA	-	-	rs60804510	by1000genomes	TCGA-BJ-A0ZH-01A-11D-A10S-08	TCGA-BJ-A0ZH-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7480c602-9209-4768-997b-15b3d2ca1b14	8c99553b-4cbb-4d31-ae3d-dd596a654801	g.chr1:82617208_82617231delAAGGAAGAAAGGAAGGAAGGAAGA								LPHN2 (159102 upstream) : None (None downstream)																							gaaaggaaggaaggaagaaaggaaggaaggaagaaaggaagaaa	0.018													5	9	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	2221205	2221205	+	IGR	DEL	A	-	-	rs112068462		TCGA-BJ-A0ZH-01A-11D-A10S-08	TCGA-BJ-A0ZH-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7480c602-9209-4768-997b-15b3d2ca1b14	8c99553b-4cbb-4d31-ae3d-dd596a654801	g.chr10:2221205delA								ADARB2 (441487 upstream) : PFKP (888547 downstream)																							aacacaaagcaaaacatgctt	0.000													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	11	68646559	68646562	+	IGR	DEL	TTCC	-	-			TCGA-BJ-A0ZH-01A-11D-A10S-08	TCGA-BJ-A0ZH-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7480c602-9209-4768-997b-15b3d2ca1b14	8c99553b-4cbb-4d31-ae3d-dd596a654801	g.chr11:68646559_68646562delTTCC								CPT1A (37160 upstream) : MRPL21 (12185 downstream)																							TTttctttctttccttccttcctt	0.142													7	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	14	21622710	21622711	+	IGR	DEL	GA	-	-			TCGA-BJ-A0ZH-01A-11D-A10S-08	TCGA-BJ-A0ZH-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7480c602-9209-4768-997b-15b3d2ca1b14	8c99553b-4cbb-4d31-ae3d-dd596a654801	g.chr14:21622710_21622711delGA								ZNF219 (49847 upstream) : OR5AU1 (386 downstream)																							ctcgggggtggagagagagaga	0.020													4	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	5	20095674	20095675	+	IGR	INS	-	AAGAAAGG	AAGAAAGG	rs59909046		TCGA-BJ-A0ZH-01A-11D-A10S-08	TCGA-BJ-A0ZH-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7480c602-9209-4768-997b-15b3d2ca1b14	8c99553b-4cbb-4d31-ae3d-dd596a654801	g.chr5:20095674_20095675insAAGAAAGG								CDH18 (107367 upstream) : None (None downstream)																							gaaagaaaggaaagaaaggaag	0.054													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	5	37086022	37086022	+	IGR	DEL	A	-	-			TCGA-BJ-A0ZH-01A-11D-A10S-08	TCGA-BJ-A0ZH-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7480c602-9209-4768-997b-15b3d2ca1b14	8c99553b-4cbb-4d31-ae3d-dd596a654801	g.chr5:37086022delA								NIPBL (20102 upstream) : C5orf42 (20308 downstream)																							AATTAATAGGAAAAAAAAaaa	0.204													4	7	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	57698565	57698566	+	5'Flank	INS	-	TGGG	TGGG			TCGA-BJ-A0ZH-01A-11D-A10S-08	TCGA-BJ-A0ZH-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7480c602-9209-4768-997b-15b3d2ca1b14	8c99553b-4cbb-4d31-ae3d-dd596a654801	g.chr7:57698565_57698566insTGGG	uc003tso.1	+											Homo sapiens macronuclear mRNA.																		CACAGGAGACCTGGGCTGCAGG	0.584													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	96445666	96445667	+	IGR	INS	-	GAAG	GAAG			TCGA-BJ-A0ZH-01A-11D-A10S-08	TCGA-BJ-A0ZH-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7480c602-9209-4768-997b-15b3d2ca1b14	8c99553b-4cbb-4d31-ae3d-dd596a654801	g.chr7:96445666_96445667insGAAG								SHFM1 (106463 upstream) : DLX6AS (152161 downstream)																							GGTCCTTAGTAgaaggaaggaa	0.178													5	1	---	---	---	---					
Unknown	0	broad.mit.edu	37	8	96977957	96977964	+	IGR	DEL	AGGGAAGG	-	-	rs67336860		TCGA-BJ-A0ZH-01A-11D-A10S-08	TCGA-BJ-A0ZH-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7480c602-9209-4768-997b-15b3d2ca1b14	8c99553b-4cbb-4d31-ae3d-dd596a654801	g.chr8:96977957_96977964delAGGGAAGG								C8orf37 (696520 upstream) : GDF6 (176596 downstream)																							gaaggaaggaagggaaggaaggaaggaa	0.125													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	69787982	69787985	+	IGR	DEL	AACA	-	-	rs59524350		TCGA-BJ-A0ZH-01A-11D-A10S-08	TCGA-BJ-A0ZH-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7480c602-9209-4768-997b-15b3d2ca1b14	8c99553b-4cbb-4d31-ae3d-dd596a654801	g.chr9:69787982_69787985delAACA								LOC100133920 (123033 upstream) : FOXD4L5 (387724 downstream)																							AGATAGAGGTAACAAACTTAAATA	0.368													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	X	35036235	35036236	+	IGR	DEL	CA	-	-			TCGA-BJ-A0ZH-01A-11D-A10S-08	TCGA-BJ-A0ZH-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7480c602-9209-4768-997b-15b3d2ca1b14	8c99553b-4cbb-4d31-ae3d-dd596a654801	g.chrX:35036235_35036236delCA								FAM47B (73201 upstream) : MAGEB16 (780223 downstream)																							GAGGAGTGTTcacacacacaca	0.084													6	5	---	---	---	---					
TSIX	9383	broad.mit.edu	37	X	73043140	73043144	+	RNA	DEL	CTTTC	-	-			TCGA-BJ-A0ZH-01A-11D-A10S-08	TCGA-BJ-A0ZH-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	7480c602-9209-4768-997b-15b3d2ca1b14	8c99553b-4cbb-4d31-ae3d-dd596a654801	g.chrX:73043140_73043144delCTTTC	uc004ebn.2	+	1		c.31101_31105delCTTTC			XIST_uc004ebm.1_RNA	NR_003255				Homo sapiens XIST antisense RNA (non-protein coding) (TSIX), non-coding RNA.												0						TTGCAtttttctttctttttttttt	0.341													2	4	---	---	---	---					
