Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
CROCCL1	84809	broad.mit.edu	37	1	16946407	16946407	+	RNA	SNP	T	G	G	rs10796418	by1000genomes	TCGA-BJ-A18Z-01A-21D-A13W-08	TCGA-BJ-A18Z-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	776cb4b1-8efd-4ea2-b53f-9dff7dd94b10	ba9479a1-929f-4e4e-8bf5-e23cb280dfcf	g.chr1:16946407T>G	uc010ocf.1	-	3		c.491A>C			CROCCL1_uc009vov.1_RNA|CROCCL1_uc001aze.2_RNA|CROCCL1_uc001azf.2_RNA					Homo sapiens mRNA for FLJ00313 protein.												0						AGCAATCTCCTCACTCAGCTG	0.672000													5	14	---	---	---	---	0	0	0.014758	0	0
C1orf131	128061	broad.mit.edu	37	1	231362573	231362573	+	Splice_Site	SNP	T	C	C			TCGA-BJ-A18Z-01A-21D-A13W-08	TCGA-BJ-A18Z-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	776cb4b1-8efd-4ea2-b53f-9dff7dd94b10	ba9479a1-929f-4e4e-8bf5-e23cb280dfcf	g.chr1:231362573T>C	uc001hun.1	-	5	644	c.607_splice	c.e5-1	p.P203_splice	C1orf131_uc001hul.2_Splice_Site_p.P203_splice|C1orf131_uc001hum.2_Splice_Site_p.P202_splice|C1orf131_uc010pwd.1_Intron	NM_152379	NP_689592	Q8NDD1	CA131_HUMAN	hypothetical protein LOC128061											central_nervous_system(1)|skin(1)	2	Breast(184;0.0871)	all_cancers(173;0.2)|Prostate(94;0.183)				TTTAGGAGGCTGTAATGAAAG	0.373000													9	165	---	---	---	---	0	0	0.008291	0	0
LGI1	9211	broad.mit.edu	37	10	95556981	95556981	+	Silent	SNP	C	T	T			TCGA-BJ-A18Z-01A-21D-A13W-08	TCGA-BJ-A18Z-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	776cb4b1-8efd-4ea2-b53f-9dff7dd94b10	ba9479a1-929f-4e4e-8bf5-e23cb280dfcf	g.chr10:95556981C>T	uc001kjc.3	+	8	1431	c.1095C>T	c.(1093-1095)AAC>AAT	p.N365N	LGI1_uc010qnv.1_Silent_p.N317N|LGI1_uc001kjd.3_Intron|LGI1_uc009xui.2_RNA|LGI1_uc001kje.2_Intron	NM_005097	NP_005088	O95970	LGI1_HUMAN	leucine-rich, glioma inactivated 1 precursor	365	EAR 4.				axon guidance|cell proliferation|positive regulation of cell growth|positive regulation of synaptic transmission	cell junction|extracellular space|synapse	receptor binding			ovary(2)|central_nervous_system(1)|skin(1)	4		Colorectal(252;0.124)				GGAACGGAAACGGATTCTACT	0.408000													24	65	---	---	---	---	0	0	0.014323	0	0
LOC650368	650368	broad.mit.edu	37	11	3424149	3424149	+	RNA	SNP	C	T	T	rs112841660		TCGA-BJ-A18Z-01A-21D-A13W-08	TCGA-BJ-A18Z-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	776cb4b1-8efd-4ea2-b53f-9dff7dd94b10	ba9479a1-929f-4e4e-8bf5-e23cb280dfcf	g.chr11:3424149C>T	uc010qxs.1	+	6		c.518C>T			LOC650368_uc001lxx.2_RNA|LOC650368_uc001lxy.2_RNA	NR_024248				Homo sapiens cDNA FLJ41654 fis, clone FEBRA2025463, weakly  similar to Homo sapiens HMT-1 mRNA for beta-1,4 mannosyltransferase.												0						TCATAGAGGACGAAGACTTCT	0.562000													3	23	---	---	---	---	0	0	0.004672	0	0
AMPD3	272	broad.mit.edu	37	11	10518462	10518462	+	Missense_Mutation	SNP	G	A	A			TCGA-BJ-A18Z-01A-21D-A13W-08	TCGA-BJ-A18Z-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	776cb4b1-8efd-4ea2-b53f-9dff7dd94b10	ba9479a1-929f-4e4e-8bf5-e23cb280dfcf	g.chr11:10518462G>A	uc001mio.1	+	10	1869	c.1534G>A	c.(1534-1536)GAG>AAG	p.E512K	AMPD3_uc010rbz.1_Missense_Mutation_p.E353K|AMPD3_uc001min.1_Missense_Mutation_p.E521K|AMPD3_uc009yfw.1_RNA|AMPD3_uc009yfz.2_RNA|AMPD3_uc001mip.1_Missense_Mutation_p.E519K|AMPD3_uc009yfy.2_Missense_Mutation_p.E512K	NM_001025389	NP_001020560	Q01432	AMPD3_HUMAN	adenosine monophosphate deaminase 3 isoform 1B	512					AMP catabolic process|purine base metabolic process|purine ribonucleoside monophosphate biosynthetic process|purine-containing compound salvage	cytosol	AMP deaminase activity|metal ion binding			large_intestine(1)|ovary(1)	2				all cancers(16;1.14e-08)|Epithelial(150;2.83e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0291)		AGATCATCGAGAGCTTCACCT	0.512000													8	158	---	---	---	---	0	0	0.038147	0	0
OR11G2	390439	broad.mit.edu	37	14	20666455	20666455	+	Missense_Mutation	SNP	C	T	T			TCGA-BJ-A18Z-01A-21D-A13W-08	TCGA-BJ-A18Z-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	776cb4b1-8efd-4ea2-b53f-9dff7dd94b10	ba9479a1-929f-4e4e-8bf5-e23cb280dfcf	g.chr14:20666455C>T	uc010tlb.1	+	1	961	c.961C>T	c.(961-963)CCA>TCA	p.P321S		NM_001005503	NP_001005503	Q8NGC1	O11G2_HUMAN	olfactory receptor, family 11, subfamily G,	321	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00108)		Epithelial(56;9.76e-07)|all cancers(55;5.61e-06)	GBM - Glioblastoma multiforme(265;0.0144)		tgttgttaccccactgcttaa	0.209000													42	105	---	---	---	---	0	0	0.027894	0	0
MEGF11	84465	broad.mit.edu	37	15	66207904	66207904	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BJ-A18Z-01A-21D-A13W-08	TCGA-BJ-A18Z-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	776cb4b1-8efd-4ea2-b53f-9dff7dd94b10	ba9479a1-929f-4e4e-8bf5-e23cb280dfcf	g.chr15:66207904G>A	uc002apm.2	-	19	2518	c.2377C>T	c.(2377-2379)CAG>TAG	p.Q793*	MEGF11_uc002apl.2_Nonsense_Mutation_p.Q718*|MEGF11_uc002apn.1_Nonsense_Mutation_p.Q793*	NM_032445	NP_115821	A6BM72	MEG11_HUMAN	multiple EGF-like-domains 11 precursor	793	EGF-like 14.					basolateral plasma membrane|integral to membrane				pancreas(1)	1						CATAGCTGCTGACACCCATAG	0.537000													5	15	---	---	---	---	0	0	0.014758	0	0
ADCY9	115	broad.mit.edu	37	16	4164528	4164528	+	Missense_Mutation	SNP	A	C	C			TCGA-BJ-A18Z-01A-21D-A13W-08	TCGA-BJ-A18Z-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	776cb4b1-8efd-4ea2-b53f-9dff7dd94b10	ba9479a1-929f-4e4e-8bf5-e23cb280dfcf	g.chr16:4164528A>C	uc002cvx.2	-	2	1455	c.916T>G	c.(916-918)TCC>GCC	p.S306A		NM_001116	NP_001107	O60503	ADCY9_HUMAN	adenylate cyclase 9	306	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6						GTGCTCCTGGACCTCACCTGG	0.612000													14	79	---	---	---	---	0	0	0.016723	0	0
MAP3K3	4215	broad.mit.edu	37	17	61759173	61759173	+	Missense_Mutation	SNP	G	A	A			TCGA-BJ-A18Z-01A-21D-A13W-08	TCGA-BJ-A18Z-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	776cb4b1-8efd-4ea2-b53f-9dff7dd94b10	ba9479a1-929f-4e4e-8bf5-e23cb280dfcf	g.chr17:61759173G>A	uc002jbg.2	+	7	869	c.550G>A	c.(550-552)GAG>AAG	p.E184K	MAP3K3_uc002jbe.2_Missense_Mutation_p.E215K|MAP3K3_uc002jbf.2_Missense_Mutation_p.E215K|MAP3K3_uc002jbh.2_Missense_Mutation_p.E215K|MAP3K3_uc010wpo.1_Missense_Mutation_p.E99K|MAP3K3_uc010wpp.1_Missense_Mutation_p.E184K	NM_002401	NP_002392	Q99759	M3K3_HUMAN	mitogen-activated protein kinase kinase kinase 3	184					MAPKKK cascade|positive regulation of I-kappaB kinase/NF-kappaB cascade|protein autophosphorylation	cytosol	ATP binding|MAP kinase kinase kinase activity|metal ion binding|protein binding			lung(3)|upper_aerodigestive_tract(1)|large_intestine(1)|breast(1)	6						CTATGTTCCTGAGCGGCAGCA	0.602000													10	111	---	---	---	---	0	0	0.010729	0	0
NFATC1	4772	broad.mit.edu	37	18	77246250	77246250	+	Missense_Mutation	SNP	C	A	A			TCGA-BJ-A18Z-01A-21D-A13W-08	TCGA-BJ-A18Z-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	776cb4b1-8efd-4ea2-b53f-9dff7dd94b10	ba9479a1-929f-4e4e-8bf5-e23cb280dfcf	g.chr18:77246250C>A	uc010xfg.1	+	9	2548	c.2095C>A	c.(2095-2097)CCA>ACA	p.P699T	NFATC1_uc002lnd.2_Missense_Mutation_p.P699T|NFATC1_uc002lne.2_Missense_Mutation_p.P227T|NFATC1_uc010xfh.1_Intron|NFATC1_uc010xfj.1_Missense_Mutation_p.P227T|NFATC1_uc002lnf.2_Missense_Mutation_p.P686T|NFATC1_uc002lng.2_Missense_Mutation_p.P686T|NFATC1_uc010xfk.1_Intron	NM_006162	NP_006153	O95644	NFAC1_HUMAN	nuclear factor of activated T-cells, cytosolic	699					intracellular signal transduction|positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|nucleus	FK506 binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			large_intestine(1)|ovary(1)	2		Esophageal squamous(42;0.0157)|Melanoma(33;0.144)		OV - Ovarian serous cystadenocarcinoma(15;3.73e-07)|BRCA - Breast invasive adenocarcinoma(31;0.0257)		TCTCACAGTTCCAATTATAAA	0.478000													11	232	---	---	---	---	2.27111e-07	2.55951e-07	0.013537	1	0
KCNK6	9424	broad.mit.edu	37	19	38810844	38810844	+	Missense_Mutation	SNP	A	G	G			TCGA-BJ-A18Z-01A-21D-A13W-08	TCGA-BJ-A18Z-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	776cb4b1-8efd-4ea2-b53f-9dff7dd94b10	ba9479a1-929f-4e4e-8bf5-e23cb280dfcf	g.chr19:38810844A>G	uc002oic.2	+	1	364	c.254A>G	c.(253-255)AAC>AGC	p.N85S		NM_004823	NP_004814	Q9Y257	KCNK6_HUMAN	potassium channel, subfamily K, member 6	85						voltage-gated potassium channel complex	inward rectifier potassium channel activity			ovary(1)	1	all_cancers(60;5.83e-07)		Lung(45;0.00047)|LUSC - Lung squamous cell carcinoma(53;0.000613)		Ibutilide(DB00308)|Quinidine(DB00908)	GGGTCCGCCAACGCCTCGGAC	0.706000													3	23	---	---	---	---	0	0	0.004672	0	0
Unknown	0	broad.mit.edu	37	2	96593000	96593000	+	RNA	SNP	A	G	G	rs111976783		TCGA-BJ-A18Z-01A-21D-A13W-08	TCGA-BJ-A18Z-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	776cb4b1-8efd-4ea2-b53f-9dff7dd94b10	ba9479a1-929f-4e4e-8bf5-e23cb280dfcf	g.chr2:96593000A>G	uc002sva.1	-	9		c.405T>C			uc010yug.1_RNA|uc002svc.1_RNA					Homo sapiens cDNA FLJ41632 fis, clone FCBBF1000297, highly  similar to Human protein immuno-reactive with anti-PTH polyclonal antibodies mRNA.																		TTCTGTGGCTATATTTGAAAC	0.338000													7	71	---	---	---	---	0	0	0.047766	0	0
Unknown	0	broad.mit.edu	37	2	96593016	96593016	+	RNA	SNP	C	A	A	rs79307257	by1000genomes	TCGA-BJ-A18Z-01A-21D-A13W-08	TCGA-BJ-A18Z-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	776cb4b1-8efd-4ea2-b53f-9dff7dd94b10	ba9479a1-929f-4e4e-8bf5-e23cb280dfcf	g.chr2:96593016C>A	uc002sva.1	-	9		c.389G>T			uc010yug.1_RNA|uc002svc.1_RNA					Homo sapiens cDNA FLJ41632 fis, clone FCBBF1000297, highly  similar to Human protein immuno-reactive with anti-PTH polyclonal antibodies mRNA.																		GAAACAGAATCTTTCTCATCA	0.318000													7	67	---	---	---	---	0.00448238	0.00468013	0.047766	1	0
Unknown	0	broad.mit.edu	37	2	96593025	96593025	+	RNA	SNP	C	T	T	rs75189823	by1000genomes	TCGA-BJ-A18Z-01A-21D-A13W-08	TCGA-BJ-A18Z-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	776cb4b1-8efd-4ea2-b53f-9dff7dd94b10	ba9479a1-929f-4e4e-8bf5-e23cb280dfcf	g.chr2:96593025C>T	uc002sva.1	-	9		c.380G>A			uc010yug.1_RNA|uc002svc.1_RNA					Homo sapiens cDNA FLJ41632 fis, clone FCBBF1000297, highly  similar to Human protein immuno-reactive with anti-PTH polyclonal antibodies mRNA.																		TCTTTCTCATCACTTGTAGCC	0.318000													6	60	---	---	---	---	0	0	0.038147	0	0
ARHGEF4	50649	broad.mit.edu	37	2	131704157	131704157	+	Missense_Mutation	SNP	G	A	A			TCGA-BJ-A18Z-01A-21D-A13W-08	TCGA-BJ-A18Z-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	776cb4b1-8efd-4ea2-b53f-9dff7dd94b10	ba9479a1-929f-4e4e-8bf5-e23cb280dfcf	g.chr2:131704157G>A	uc002tsa.1	+	4	896	c.376G>A	c.(376-378)GCT>ACT	p.A126T	ARHGEF4_uc010fmw.1_Missense_Mutation_p.A772T|ARHGEF4_uc002tsb.1_Missense_Mutation_p.A126T|ARHGEF4_uc010fmx.1_Missense_Mutation_p.A126T|ARHGEF4_uc002trz.1_Missense_Mutation_p.A772T	NM_015320	NP_056135	Q9NR80	ARHG4_HUMAN	Rho guanine nucleotide exchange factor 4 isoform	126	ABR (APC-binding region) domain.				apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|lamellipodium assembly|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|ruffle membrane	protein domain specific binding|Rac guanyl-nucleotide exchange factor activity			breast(3)|ovary(2)|skin(1)	6		Prostate(154;0.055)		BRCA - Breast invasive adenocarcinoma(221;0.097)		CTCCCAGAGTGCTCCAACGGG	0.532000													10	127	---	---	---	---	0	0	0.058154	0	0
AOX1	316	broad.mit.edu	37	2	201467063	201467063	+	Missense_Mutation	SNP	T	C	C			TCGA-BJ-A18Z-01A-21D-A13W-08	TCGA-BJ-A18Z-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	776cb4b1-8efd-4ea2-b53f-9dff7dd94b10	ba9479a1-929f-4e4e-8bf5-e23cb280dfcf	g.chr2:201467063T>C	uc002uvx.2	+	6	594	c.493T>C	c.(493-495)TGT>CGT	p.C165R		NM_001159	NP_001150	Q06278	ADO_HUMAN	aldehyde oxidase 1	165					inflammatory response|reactive oxygen species metabolic process	cytoplasm	2 iron, 2 sulfur cluster binding|aldehyde oxidase activity|flavin adenine dinucleotide binding|iron ion binding|NAD binding|xanthine dehydrogenase activity			ovary(4)|pancreas(1)|skin(1)	6					Brimonidine(DB00484)|Chlorpromazine(DB00477)|Famciclovir(DB00426)|Menadione(DB00170)|Methotrexate(DB00563)|NADH(DB00157)|Palonosetron(DB00377)|Penciclovir(DB00299)|Raloxifene(DB00481)|Zaleplon(DB00962)|Zonisamide(DB00909)	CAAGACTTTCTGTAAAGTAAG	0.448000													38	77	---	---	---	---	0	0	0.027894	0	0
GART	2618	broad.mit.edu	37	21	34876503	34876503	+	Silent	SNP	G	A	A			TCGA-BJ-A18Z-01A-21D-A13W-08	TCGA-BJ-A18Z-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	776cb4b1-8efd-4ea2-b53f-9dff7dd94b10	ba9479a1-929f-4e4e-8bf5-e23cb280dfcf	g.chr21:34876503G>A	uc002yrx.2	-	22	3096	c.2961C>T	c.(2959-2961)GCC>GCT	p.A987A	GART_uc002yrz.2_Silent_p.A987A|GART_uc010gmd.2_Silent_p.A649A|GART_uc002yry.2_Silent_p.A987A	NM_000819	NP_000810	P22102	PUR2_HUMAN	phosphoribosylglycinamide formyltransferase,	987	GART.				'de novo' IMP biosynthetic process|purine base biosynthetic process	cytosol	ATP binding|metal ion binding|methyltransferase activity|phosphoribosylamine-glycine ligase activity|phosphoribosylformylglycinamidine cyclo-ligase activity|phosphoribosylglycinamide formyltransferase activity|protein binding			ovary(1)	1					Pemetrexed(DB00642)	CCAGCTGAAGGGCTGCAGGAA	0.428000													4	56	---	---	---	---	0	0	0.009096	0	0
RANBP3L	202151	broad.mit.edu	37	5	36257600	36257600	+	Missense_Mutation	SNP	G	T	T			TCGA-BJ-A18Z-01A-21D-A13W-08	TCGA-BJ-A18Z-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	776cb4b1-8efd-4ea2-b53f-9dff7dd94b10	ba9479a1-929f-4e4e-8bf5-e23cb280dfcf	g.chr5:36257600G>T	uc003jkh.2	-	9	1221	c.728C>A	c.(727-729)CCA>CAA	p.P243Q	RANBP3L_uc011cow.1_Missense_Mutation_p.P268Q	NM_145000	NP_659437	Q86VV4	RNB3L_HUMAN	RAN binding protein 3-like isoform 2	243					intracellular transport					ovary(1)	1	all_lung(31;4.52e-05)		Epithelial(62;0.0543)|Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|all cancers(62;0.149)|Colorectal(62;0.202)			GGATTTGAATGGTTTTTCCTT	0.313000													6	83	---	---	---	---	2.7689e-08	3.17083e-08	0.029380	1	0
HCG27	253018	broad.mit.edu	37	6	31170608	31170608	+	RNA	SNP	C	T	T	rs115974817	byFrequency	TCGA-BJ-A18Z-01A-21D-A13W-08	TCGA-BJ-A18Z-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	776cb4b1-8efd-4ea2-b53f-9dff7dd94b10	ba9479a1-929f-4e4e-8bf5-e23cb280dfcf	g.chr6:31170608C>T	uc011dni.1	+	2		c.583C>T				NR_026791				Homo sapiens cDNA FLJ40123 fis, clone TESTI2010280.												0						TCCTTCCTGCCGCACCTTCTG	0.522000													11	127	---	---	---	---	0	0	0.010729	0	0
GSTA2	2939	broad.mit.edu	37	6	52616490	52616490	+	Missense_Mutation	SNP	C	T	T			TCGA-BJ-A18Z-01A-21D-A13W-08	TCGA-BJ-A18Z-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	776cb4b1-8efd-4ea2-b53f-9dff7dd94b10	ba9479a1-929f-4e4e-8bf5-e23cb280dfcf	g.chr6:52616490C>T	uc003pay.2	-	6	581	c.431G>A	c.(430-432)GGA>GAA	p.G144E		NM_000846	NP_000837	P09210	GSTA2_HUMAN	glutathione S-transferase alpha 2	144	GST C-terminal.				glutathione metabolic process|xenobiotic metabolic process	cytosol	glutathione transferase activity			ovary(1)	1	Lung NSC(77;0.118)				Aminophenazone(DB01424)|Amsacrine(DB00276)|Busulfan(DB01008)|Chlorambucil(DB00291)|Chloroquine(DB00608)|Cinnarizine(DB00568)|Clofibrate(DB00636)|Ethacrynic acid(DB00903)|Glutathione(DB00143)|Mechlorethamine(DB00888)|Praziquantel(DB01058)|Vitamin E(DB00163)	GTAGTCTTGTCCGTGGCTCTT	0.537000													19	61	---	---	---	---	0	0	0.062417	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-BJ-A18Z-01A-21D-A13W-08	TCGA-BJ-A18Z-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	776cb4b1-8efd-4ea2-b53f-9dff7dd94b10	ba9479a1-929f-4e4e-8bf5-e23cb280dfcf	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				35	76	---	---	---	---	0	0	0.054565	0	0
WNK2	65268	broad.mit.edu	37	9	96069101	96069101	+	Missense_Mutation	SNP	G	A	A			TCGA-BJ-A18Z-01A-21D-A13W-08	TCGA-BJ-A18Z-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	776cb4b1-8efd-4ea2-b53f-9dff7dd94b10	ba9479a1-929f-4e4e-8bf5-e23cb280dfcf	g.chr9:96069101G>A	uc004ati.1	+	27	6368	c.6368G>A	c.(6367-6369)AGT>AAT	p.S2123N	WNK2_uc011lud.1_Missense_Mutation_p.S2086N|WNK2_uc004atj.2_Missense_Mutation_p.S2086N|WNK2_uc004atk.2_Intron	NM_006648	NP_006639	Q9Y3S1	WNK2_HUMAN	WNK lysine deficient protein kinase 2	2123					intracellular protein kinase cascade		ATP binding|protein binding|protein serine/threonine kinase activity			lung(4)|stomach(3)|ovary(2)|large_intestine(1)|central_nervous_system(1)|breast(1)	12						GAACACAGCAGTAGTAATTAT	0.567000													17	238	---	---	---	---	0	0	0.033300	0	0
MUSK	4593	broad.mit.edu	37	9	113563207	113563207	+	Missense_Mutation	SNP	C	G	G			TCGA-BJ-A18Z-01A-21D-A13W-08	TCGA-BJ-A18Z-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	776cb4b1-8efd-4ea2-b53f-9dff7dd94b10	ba9479a1-929f-4e4e-8bf5-e23cb280dfcf	g.chr9:113563207C>G	uc004bey.2	+	14	2647	c.2549C>G	c.(2548-2550)ACC>AGC	p.T850S	MUSK_uc004bez.1_Missense_Mutation_p.T430S	NM_005592	NP_005583	O15146	MUSK_HUMAN	skeletal muscle receptor tyrosine kinase	850	Protein kinase.|Cytoplasmic (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(3)|ovary(2)|central_nervous_system(1)	6						CCCAGTTTCACCAGTATTCAC	0.507000													11	30	---	---	---	---	0	0	0.010729	0	0
FAM129B	64855	broad.mit.edu	37	9	130279165	130279165	+	Missense_Mutation	SNP	G	A	A			TCGA-BJ-A18Z-01A-21D-A13W-08	TCGA-BJ-A18Z-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	776cb4b1-8efd-4ea2-b53f-9dff7dd94b10	ba9479a1-929f-4e4e-8bf5-e23cb280dfcf	g.chr9:130279165G>A	uc004brh.2	-	8	1146	c.944C>T	c.(943-945)TCC>TTC	p.S315F	FAM129B_uc004bri.2_Missense_Mutation_p.S302F|FAM129B_uc004brj.3_Missense_Mutation_p.S315F	NM_022833	NP_073744	Q96TA1	NIBL1_HUMAN	hypothetical protein LOC64855 isoform 1	315							protein binding				0						GTGCTCCTTGGAGGTGATAAT	0.597000													52	245	---	---	---	---	0	0	0.048971	0	0
Unknown	0	broad.mit.edu	37	1	5796325	5796326	+	IGR	INS	-	AGAA	AGAA	rs61517527		TCGA-BJ-A18Z-01A-21D-A13W-08	TCGA-BJ-A18Z-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	776cb4b1-8efd-4ea2-b53f-9dff7dd94b10	ba9479a1-929f-4e4e-8bf5-e23cb280dfcf	g.chr1:5796325_5796326insAGAA								AJAP1 (952475 upstream) : NPHP4 (126544 downstream)																							aAAGAAAagagagaaagagaaa	0.030													3	4	---	---	---	---					
ESPNP	284729	broad.mit.edu	37	1	17034125	17034126	+	Frame_Shift_Ins	INS	-	AGCT	AGCT	rs141324796	by1000genomes	TCGA-BJ-A18Z-01A-21D-A13W-08	TCGA-BJ-A18Z-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	776cb4b1-8efd-4ea2-b53f-9dff7dd94b10	ba9479a1-929f-4e4e-8bf5-e23cb280dfcf	g.chr1:17034125_17034126insAGCT	uc001azn.1	-	3	478_479	c.364_365insAGCT	c.(364-366)TGGfs	p.W122fs	ESPNP_uc010ocj.1_Frame_Shift_Ins_p.W52fs	NR_026567				RecName: Full=Espin; AltName: Full=Ectoplasmic specialization protein; AltName: Full=Autosomal recessive deafness type 36 protein;												0						CAGCAGCAGCCAGCTGAGCACC	0.663													4	7	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	11696232	11696233	+	IGR	INS	-	AGGAAGGAAGGA	AGGAAGGAAGGA			TCGA-BJ-A18Z-01A-21D-A13W-08	TCGA-BJ-A18Z-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	776cb4b1-8efd-4ea2-b53f-9dff7dd94b10	ba9479a1-929f-4e4e-8bf5-e23cb280dfcf	g.chr10:11696232_11696233insAGGAAGGAAGGA								USP6NL (42553 upstream) : ECHDC3 (88123 downstream)																							AGGaggaggagaggaaggaagg	0.035													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42384410	42384410	+	IGR	DEL	A	-	-			TCGA-BJ-A18Z-01A-21D-A13W-08	TCGA-BJ-A18Z-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	776cb4b1-8efd-4ea2-b53f-9dff7dd94b10	ba9479a1-929f-4e4e-8bf5-e23cb280dfcf	g.chr10:42384410delA								None (None upstream) : LOC441666 (442905 downstream)																							tggaatcgtcatcgaatgaat	0.000													9	337	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42384716	42384716	+	IGR	DEL	G	-	-			TCGA-BJ-A18Z-01A-21D-A13W-08	TCGA-BJ-A18Z-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	776cb4b1-8efd-4ea2-b53f-9dff7dd94b10	ba9479a1-929f-4e4e-8bf5-e23cb280dfcf	g.chr10:42384716delG								None (None upstream) : LOC441666 (442599 downstream)																							ggaatcgaatggaatcatcat	0.000													25	1576	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42385361	42385361	+	IGR	DEL	T	-	-			TCGA-BJ-A18Z-01A-21D-A13W-08	TCGA-BJ-A18Z-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	776cb4b1-8efd-4ea2-b53f-9dff7dd94b10	ba9479a1-929f-4e4e-8bf5-e23cb280dfcf	g.chr10:42385361delT								None (None upstream) : LOC441666 (441954 downstream)																							tgcaatcgaatagaattatcg	0.000													7	670	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42390479	42390479	+	IGR	DEL	G	-	-	rs72505278		TCGA-BJ-A18Z-01A-21D-A13W-08	TCGA-BJ-A18Z-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	776cb4b1-8efd-4ea2-b53f-9dff7dd94b10	ba9479a1-929f-4e4e-8bf5-e23cb280dfcf	g.chr10:42390479delG								None (None upstream) : LOC441666 (436836 downstream)																							AAcatcgaatggaatcgaatg	0.040													25	177	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42392723	42392723	+	IGR	DEL	T	-	-			TCGA-BJ-A18Z-01A-21D-A13W-08	TCGA-BJ-A18Z-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	776cb4b1-8efd-4ea2-b53f-9dff7dd94b10	ba9479a1-929f-4e4e-8bf5-e23cb280dfcf	g.chr10:42392723delT								None (None upstream) : LOC441666 (434592 downstream)																							tatcctcaaatggaatcgaat	0.000													7	2613	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42400586	42400586	+	IGR	DEL	A	-	-	rs74207080		TCGA-BJ-A18Z-01A-21D-A13W-08	TCGA-BJ-A18Z-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	776cb4b1-8efd-4ea2-b53f-9dff7dd94b10	ba9479a1-929f-4e4e-8bf5-e23cb280dfcf	g.chr10:42400586delA								None (None upstream) : LOC441666 (426729 downstream)																							atcttcgtataaaaactagac	0.000													24	1827	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42408305	42408306	+	IGR	INS	-	T	T			TCGA-BJ-A18Z-01A-21D-A13W-08	TCGA-BJ-A18Z-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	776cb4b1-8efd-4ea2-b53f-9dff7dd94b10	ba9479a1-929f-4e4e-8bf5-e23cb280dfcf	g.chr10:42408305_42408306insT								None (None upstream) : LOC441666 (419009 downstream)																							ttgaaacactctttttgcagaa	0.000													8	838	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42600059	42600059	+	IGR	DEL	G	-	-			TCGA-BJ-A18Z-01A-21D-A13W-08	TCGA-BJ-A18Z-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	776cb4b1-8efd-4ea2-b53f-9dff7dd94b10	ba9479a1-929f-4e4e-8bf5-e23cb280dfcf	g.chr10:42600059delG								None (None upstream) : LOC441666 (227256 downstream)																							ggaattgaatggaatcatcat	0.000													7	1443	---	---	---	---					
FAM99B	100132464	broad.mit.edu	37	11	1707866	1707881	+	5'Flank	DEL	CTTCTTCCCTCCCTCA	-	-	rs113231874		TCGA-BJ-A18Z-01A-21D-A13W-08	TCGA-BJ-A18Z-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	776cb4b1-8efd-4ea2-b53f-9dff7dd94b10	ba9479a1-929f-4e4e-8bf5-e23cb280dfcf	g.chr11:1707866_1707881delCTTCTTCCCTCCCTCA	uc010qxa.1	-						uc001ltz.1_5'Flank	NR_026642				Homo sapiens family with sequence similarity 99, member B (FAM99B), non-coding RNA.												0						tccttccttccttcttccctccctcacttccttcct	0.236													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	11	104420339	104420342	+	IGR	DEL	TCTT	-	-			TCGA-BJ-A18Z-01A-21D-A13W-08	TCGA-BJ-A18Z-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	776cb4b1-8efd-4ea2-b53f-9dff7dd94b10	ba9479a1-929f-4e4e-8bf5-e23cb280dfcf	g.chr11:104420339_104420342delTCTT								PDGFD (385312 upstream) : CASP12 (336100 downstream)																							tctctttttctctttctttctttc	0.152													6	1	---	---	---	---					
Unknown	0	broad.mit.edu	37	13	31002797	31002797	+	IGR	DEL	A	-	-			TCGA-BJ-A18Z-01A-21D-A13W-08	TCGA-BJ-A18Z-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	776cb4b1-8efd-4ea2-b53f-9dff7dd94b10	ba9479a1-929f-4e4e-8bf5-e23cb280dfcf	g.chr13:31002797delA								LOC100188949 (54761 upstream) : HMGB1 (30084 downstream)																							AGATGTTCTTAAAAAAAAAAA	0.333													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	46394988	46394990	+	IGR	DEL	ATG	-	-	rs144015128		TCGA-BJ-A18Z-01A-21D-A13W-08	TCGA-BJ-A18Z-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	776cb4b1-8efd-4ea2-b53f-9dff7dd94b10	ba9479a1-929f-4e4e-8bf5-e23cb280dfcf	g.chr16:46394988_46394990delATG								None (None upstream) : ANKRD26P1 (108259 downstream)																							tcgattccatatgatgatgactc	0.000													10	211	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	46403697	46403698	+	IGR	INS	-	G	G	rs142975115		TCGA-BJ-A18Z-01A-21D-A13W-08	TCGA-BJ-A18Z-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	776cb4b1-8efd-4ea2-b53f-9dff7dd94b10	ba9479a1-929f-4e4e-8bf5-e23cb280dfcf	g.chr16:46403697_46403698insG								None (None upstream) : ANKRD26P1 (99551 downstream)																							tttcattcgatgatgattccat	0.000													10	1409	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	46405916	46405916	+	IGR	DEL	T	-	-	rs77422485		TCGA-BJ-A18Z-01A-21D-A13W-08	TCGA-BJ-A18Z-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	776cb4b1-8efd-4ea2-b53f-9dff7dd94b10	ba9479a1-929f-4e4e-8bf5-e23cb280dfcf	g.chr16:46405916delT								None (None upstream) : ANKRD26P1 (97333 downstream)																							ctttcaatcattCCCTTTGAT	0.050													11	572	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	46406908	46406910	+	IGR	DEL	ATG	-	-	rs142002187		TCGA-BJ-A18Z-01A-21D-A13W-08	TCGA-BJ-A18Z-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	776cb4b1-8efd-4ea2-b53f-9dff7dd94b10	ba9479a1-929f-4e4e-8bf5-e23cb280dfcf	g.chr16:46406908_46406910delATG								None (None upstream) : ANKRD26P1 (96339 downstream)																							tcgattccatatgatgatgactc	0.000													11	443	---	---	---	---					
Unknown	0	broad.mit.edu	37	18	18517211	18517211	+	IGR	DEL	C	-	-			TCGA-BJ-A18Z-01A-21D-A13W-08	TCGA-BJ-A18Z-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	776cb4b1-8efd-4ea2-b53f-9dff7dd94b10	ba9479a1-929f-4e4e-8bf5-e23cb280dfcf	g.chr18:18517211delC								None (None upstream) : ROCK1 (12494 downstream)																							gaaatgtcttcccataaaaac	0.000													8	1121	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	64602785	64602786	+	IGR	INS	-	CAC	CAC	rs74709929		TCGA-BJ-A18Z-01A-21D-A13W-08	TCGA-BJ-A18Z-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	776cb4b1-8efd-4ea2-b53f-9dff7dd94b10	ba9479a1-929f-4e4e-8bf5-e23cb280dfcf	g.chr2:64602785_64602786insCAC								PELI1 (231180 upstream) : HSPC159 (78541 downstream)																							accatcaccatcaccatcacca	0.054													4	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	73956941	73956941	+	IGR	DEL	T	-	-			TCGA-BJ-A18Z-01A-21D-A13W-08	TCGA-BJ-A18Z-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	776cb4b1-8efd-4ea2-b53f-9dff7dd94b10	ba9479a1-929f-4e4e-8bf5-e23cb280dfcf	g.chr2:73956941delT								NAT8B (28474 upstream) : TPRKB (16 downstream)																							gtgcctggccTTTTTTTTTTT	0.109													6	2	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	609853	609854	+	IGR	INS	-	T	T	rs66754436		TCGA-BJ-A18Z-01A-21D-A13W-08	TCGA-BJ-A18Z-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	776cb4b1-8efd-4ea2-b53f-9dff7dd94b10	ba9479a1-929f-4e4e-8bf5-e23cb280dfcf	g.chr4:609853_609854insT								PIGG (76534 upstream) : PDE6B (9509 downstream)																							ctgttcttttattttttttttt	0.000													2	4	---	---	---	---					
CCT5	22948	broad.mit.edu	37	5	10250036	10250047	+	5'Flank	DEL	AAAAAAAAAAAC	-	-	rs57941186	by1000genomes	TCGA-BJ-A18Z-01A-21D-A13W-08	TCGA-BJ-A18Z-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	776cb4b1-8efd-4ea2-b53f-9dff7dd94b10	ba9479a1-929f-4e4e-8bf5-e23cb280dfcf	g.chr5:10250036_10250047delAAAAAAAAAAAC	uc003jeq.2	+						FAM173B_uc003jeo.2_5'Flank|FAM173B_uc003jep.2_5'Flank|FAM173B_uc010itr.2_5'Flank|CCT5_uc011cmq.1_5'Flank|CCT5_uc003jer.2_5'Flank|CCT5_uc010its.2_5'Flank|CCT5_uc011cmr.1_5'Flank|CCT5_uc011cms.1_5'Flank|CCT5_uc011cmt.1_5'Flank	NM_012073	NP_036205	P48643	TCPE_HUMAN	chaperonin containing TCP1, subunit 5 (epsilon)						'de novo' posttranslational protein folding|response to virus	microtubule organizing center|nucleolus	ATP binding|unfolded protein binding			ovary(2)	2						aaaaaaaaaaaaaaaaaaaaaCCGGAAATGGG	0.439													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	1478502	1478503	+	IGR	INS	-	TGG	TGG			TCGA-BJ-A18Z-01A-21D-A13W-08	TCGA-BJ-A18Z-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	776cb4b1-8efd-4ea2-b53f-9dff7dd94b10	ba9479a1-929f-4e4e-8bf5-e23cb280dfcf	g.chr6:1478502_1478503insTGG								FOXF2 (82671 upstream) : FOXC1 (132178 downstream)																							gatggtggtgatggtggtggtg	0.000													3	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	132922222	132922223	+	IGR	INS	-	GGAG	GGAG	rs71746543		TCGA-BJ-A18Z-01A-21D-A13W-08	TCGA-BJ-A18Z-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	776cb4b1-8efd-4ea2-b53f-9dff7dd94b10	ba9479a1-929f-4e4e-8bf5-e23cb280dfcf	g.chr6:132922222_132922223insGGAG								TAAR5 (11345 upstream) : TAAR2 (16066 downstream)																							gaaggagggaaggaaggaggga	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	71952919	71952920	+	IGR	INS	-	A	A			TCGA-BJ-A18Z-01A-21D-A13W-08	TCGA-BJ-A18Z-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	776cb4b1-8efd-4ea2-b53f-9dff7dd94b10	ba9479a1-929f-4e4e-8bf5-e23cb280dfcf	g.chr7:71952919_71952920insA								CALN1 (40783 upstream) : TYW1B (70809 downstream)																							aggaaggaaggaaggaaggaag	0.089													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	139888591	139888591	+	IGR	DEL	T	-	-			TCGA-BJ-A18Z-01A-21D-A13W-08	TCGA-BJ-A18Z-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	776cb4b1-8efd-4ea2-b53f-9dff7dd94b10	ba9479a1-929f-4e4e-8bf5-e23cb280dfcf	g.chr7:139888591delT								LOC100134229 (9152 upstream) : SLC37A3 (144963 downstream)																							TCATTCTTGCTTTTTTTTTTT	0.139													5	9	---	---	---	---					
Unknown	0	broad.mit.edu	37	8	101765212	101765215	+	IGR	DEL	TTCC	-	-			TCGA-BJ-A18Z-01A-21D-A13W-08	TCGA-BJ-A18Z-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	776cb4b1-8efd-4ea2-b53f-9dff7dd94b10	ba9479a1-929f-4e4e-8bf5-e23cb280dfcf	g.chr8:101765212_101765215delTTCC								PABPC1 (30897 upstream) : YWHAZ (165589 downstream)																							AGCTGATCCTttccttccttcctt	0.250													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	69876385	69876386	+	IGR	INS	-	TCT	TCT			TCGA-BJ-A18Z-01A-21D-A13W-08	TCGA-BJ-A18Z-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	776cb4b1-8efd-4ea2-b53f-9dff7dd94b10	ba9479a1-929f-4e4e-8bf5-e23cb280dfcf	g.chr9:69876385_69876386insTCT								LOC100133920 (211436 upstream) : FOXD4L5 (299323 downstream)																							TTCTTCTCTTCTCTTCTTGTTT	0.277													4	8	---	---	---	---					
FAM22F	54754	broad.mit.edu	37	9	97080945	97080947	+	In_Frame_Del	DEL	AGA	-	-			TCGA-BJ-A18Z-01A-21D-A13W-08	TCGA-BJ-A18Z-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	776cb4b1-8efd-4ea2-b53f-9dff7dd94b10	ba9479a1-929f-4e4e-8bf5-e23cb280dfcf	g.chr9:97080945_97080947delAGA	uc004aup.1	-	7	2092_2094	c.2071_2073delTCT	c.(2071-2073)TCTdel	p.S691del		NM_017561	NP_060031	A1L443	FA22F_HUMAN	hypothetical protein LOC54754	691				Missing (in Ref. 2; AAI30391 and 3; CAB61394).							0		Acute lymphoblastic leukemia(62;0.136)				TGCTGGCAGGAGAAGGTGATGGG	0.611													6	3	---	---	---	---					
MIR1277	100302214	broad.mit.edu	37	X	117520366	117520367	+	RNA	DEL	AT	-	-			TCGA-BJ-A18Z-01A-21D-A13W-08	TCGA-BJ-A18Z-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	776cb4b1-8efd-4ea2-b53f-9dff7dd94b10	ba9479a1-929f-4e4e-8bf5-e23cb280dfcf	g.chrX:117520366_117520367delAT	hsa-mir-1277|MI0006419	+			c.10_11delAT			WDR44_uc004eqn.2_Intron|WDR44_uc004eqo.2_Intron|WDR44_uc011mtr.1_Intron																	0						AACCTCCCAAatatatatatat	0.203													9	64	---	---	---	---					
Unknown	0	broad.mit.edu	37	Y	13637596	13637597	+	IGR	INS	-	T	T			TCGA-BJ-A18Z-01A-21D-A13W-08	TCGA-BJ-A18Z-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	776cb4b1-8efd-4ea2-b53f-9dff7dd94b10	ba9479a1-929f-4e4e-8bf5-e23cb280dfcf	g.chrY:13637596_13637597insT								None (None upstream) : None (None downstream)																							GGCATAGATACGTTTGAAGAGA	0.351													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	Y	13842715	13842715	+	IGR	DEL	G	-	-			TCGA-BJ-A18Z-01A-21D-A13W-08	TCGA-BJ-A18Z-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	776cb4b1-8efd-4ea2-b53f-9dff7dd94b10	ba9479a1-929f-4e4e-8bf5-e23cb280dfcf	g.chrY:13842715delG								None (None upstream) : TTTY15 (931583 downstream)																							atcaacccgagtggaatggaa	0.000													8	958	---	---	---	---					
Unknown	0	broad.mit.edu	37	Y	58827381	58827381	+	IGR	DEL	A	-	-			TCGA-BJ-A18Z-01A-21D-A13W-08	TCGA-BJ-A18Z-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	776cb4b1-8efd-4ea2-b53f-9dff7dd94b10	ba9479a1-929f-4e4e-8bf5-e23cb280dfcf	g.chrY:58827381delA								None (None upstream) : None (None downstream)																							tttccattccatttgatttga	0.000													10	839	---	---	---	---					
