Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
CROCCL2	114819	broad.mit.edu	37	1	16812113	16812113	+	RNA	SNP	G	A	A	rs142394748	by1000genomes	TCGA-BJ-A190-01A-11D-A13W-08	TCGA-BJ-A190-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd26a8e5-dcb1-4574-bcf8-af69ffc5b4e3	a74f11fa-c6e1-4b3d-991a-f3c86ae946ef	g.chr1:16812113G>A	uc001ayt.2	-	7		c.1439C>T			CROCCL2_uc001ays.2_RNA	NR_023386				Homo sapiens mRNA for KIAA1922 protein, partial cds.												0						ATCCTTCTCCGGATTCTGCTT	0.607000													6	22	---	---	---		0	0	0.001984	0	0
CC2D1B	200014	broad.mit.edu	37	1	52824716	52824716	+	Missense_Mutation	SNP	G	A	A	rs141099732		TCGA-BJ-A190-01A-11D-A13W-08	TCGA-BJ-A190-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd26a8e5-dcb1-4574-bcf8-af69ffc5b4e3	a74f11fa-c6e1-4b3d-991a-f3c86ae946ef	g.chr1:52824716G>A	uc001ctq.1	-	11	1378	c.1240C>T	c.(1240-1242)CAT>TAT	p.H414Y	CC2D1B_uc001ctr.2_5'Flank|CC2D1B_uc001cts.2_Missense_Mutation_p.H105Y	NM_032449	NP_115825	Q5T0F9	C2D1B_HUMAN	coiled-coil and C2 domain containing 1B	414										ovary(2)	2						ATGCGCTCATGCATCCGAGCC	0.667000													4	25	---	---	---		0	0	0.000248	0	0
RPAP2	79871	broad.mit.edu	37	1	92769558	92769558	+	Missense_Mutation	SNP	T	C	C			TCGA-BJ-A190-01A-11D-A13W-08	TCGA-BJ-A190-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd26a8e5-dcb1-4574-bcf8-af69ffc5b4e3	a74f11fa-c6e1-4b3d-991a-f3c86ae946ef	g.chr1:92769558T>C	uc001dot.2	+	4	368	c.259T>C	c.(259-261)TAC>CAC	p.Y87H	RPAP2_uc009wdh.2_RNA	NM_024813	NP_079089	Q8IXW5	RPAP2_HUMAN	RNA polymerase II associated protein 2	87	RTR1-type.					integral to membrane|nucleus	metal ion binding|phosphoprotein phosphatase activity			ovary(1)	1		all_lung(203;0.0565)|Lung NSC(277;0.152)|Glioma(108;0.222)		all cancers(265;0.00647)|GBM - Glioblastoma multiforme(16;0.0234)|Epithelial(280;0.115)		ACCTGCTCACTACAGTGATGT	0.294000													33	87	---	---	---		0	0	0.003271	0	0
KIAA1274	27143	broad.mit.edu	37	10	72293805	72293805	+	Missense_Mutation	SNP	G	A	A			TCGA-BJ-A190-01A-11D-A13W-08	TCGA-BJ-A190-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd26a8e5-dcb1-4574-bcf8-af69ffc5b4e3	a74f11fa-c6e1-4b3d-991a-f3c86ae946ef	g.chr10:72293805G>A	uc001jrd.3	+	8	1279	c.998G>A	c.(997-999)CGC>CAC	p.R333H		NM_014431	NP_055246	Q9ULE6	PALD_HUMAN	KIAA1274	333										ovary(2)|central_nervous_system(1)	3						CTGCTTCACCGCAGTGGGACC	0.662000													8	9	---	---	---		0	0	0.003080	0	0
CNNM1	26507	broad.mit.edu	37	10	101147757	101147757	+	Missense_Mutation	SNP	C	T	T			TCGA-BJ-A190-01A-11D-A13W-08	TCGA-BJ-A190-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd26a8e5-dcb1-4574-bcf8-af69ffc5b4e3	a74f11fa-c6e1-4b3d-991a-f3c86ae946ef	g.chr10:101147757C>T	uc001kpp.3	+	8	2810	c.2521C>T	c.(2521-2523)CCG>TCG	p.P841S	CNNM1_uc010qpi.1_Missense_Mutation_p.P862S|CNNM1_uc009xwf.2_Missense_Mutation_p.P841S|CNNM1_uc009xwg.2_Missense_Mutation_p.P241S	NM_020348	NP_065081	Q9NRU3	CNNM1_HUMAN	cyclin M1	841					ion transport	integral to membrane|plasma membrane					0		Colorectal(252;0.234)		Epithelial(162;6.82e-10)|all cancers(201;5.62e-08)		GAACAGCCTGCCGTGTAAGTC	0.642000													3	27	---	---	---		0	0	0.000248	0	0
ANKRD12	23253	broad.mit.edu	37	18	9257952	9257952	+	Missense_Mutation	SNP	G	A	A			TCGA-BJ-A190-01A-11D-A13W-08	TCGA-BJ-A190-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd26a8e5-dcb1-4574-bcf8-af69ffc5b4e3	a74f11fa-c6e1-4b3d-991a-f3c86ae946ef	g.chr18:9257952G>A	uc002knv.2	+	9	4944	c.4687G>A	c.(4687-4689)GTG>ATG	p.V1563M	ANKRD12_uc002knw.2_Missense_Mutation_p.V1540M|ANKRD12_uc002knx.2_Missense_Mutation_p.V1540M|ANKRD12_uc010dkx.1_Missense_Mutation_p.V1270M	NM_015208	NP_056023	Q6UB98	ANR12_HUMAN	ankyrin repeat domain 12 isoform 1	1563						nucleus				ovary(2)|central_nervous_system(1)	3						CTTTGTCCCAGTGTACTCTGA	0.353000													6	108	---	---	---		0	0	0.001984	0	0
ZNF93	81931	broad.mit.edu	37	19	20044195	20044195	+	Missense_Mutation	SNP	T	C	C			TCGA-BJ-A190-01A-11D-A13W-08	TCGA-BJ-A190-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd26a8e5-dcb1-4574-bcf8-af69ffc5b4e3	a74f11fa-c6e1-4b3d-991a-f3c86ae946ef	g.chr19:20044195T>C	uc002non.2	+	4	542	c.431T>C	c.(430-432)GTA>GCA	p.V144A		NM_031218	NP_112495	P35789	ZNF93_HUMAN	zinc finger protein 93	144						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			pancreas(1)	1						CAGAGCAAAGTATTTCAATGT	0.308000													21	67	---	---	---		0	0	0.008871	0	0
MYBPC2	4606	broad.mit.edu	37	19	50939057	50939057	+	Missense_Mutation	SNP	C	T	T			TCGA-BJ-A190-01A-11D-A13W-08	TCGA-BJ-A190-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd26a8e5-dcb1-4574-bcf8-af69ffc5b4e3	a74f11fa-c6e1-4b3d-991a-f3c86ae946ef	g.chr19:50939057C>T	uc002psf.2	+	3	185	c.134C>T	c.(133-135)CCG>CTG	p.P45L		NM_004533	NP_004524	Q14324	MYPC2_HUMAN	myosin binding protein C, fast type	45					cell adhesion|muscle filament sliding	cytosol|myosin filament	actin binding|structural constituent of muscle			breast(1)	1		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.0079)|GBM - Glioblastoma multiforme(134;0.0144)		GACCAGTCCCCGACTGCAGAG	0.537000													3	16	---	---	---		0	0	0.004672	0	0
AHSG	197	broad.mit.edu	37	3	186338467	186338467	+	Silent	SNP	C	T	T	rs141346252		TCGA-BJ-A190-01A-11D-A13W-08	TCGA-BJ-A190-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd26a8e5-dcb1-4574-bcf8-af69ffc5b4e3	a74f11fa-c6e1-4b3d-991a-f3c86ae946ef	g.chr3:186338467C>T	uc003fqk.3	+	7	933	c.852C>T	c.(850-852)GGC>GGT	p.G284G	AHSG_uc003fql.3_Silent_p.G285G|AHSG_uc003fqm.3_Silent_p.G283G|AHSG_uc010hyp.2_Silent_p.G247G	NM_001622	NP_001613	P02765	FETUA_HUMAN	alpha-2-HS-glycoprotein	284					acute-phase response|negative regulation of bone mineralization|negative regulation of insulin receptor signaling pathway|pinocytosis|positive regulation of phagocytosis|regulation of inflammatory response|skeletal system development	extracellular space	cysteine-type endopeptidase inhibitor activity|protein binding				0	all_cancers(143;3.64e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;3.27e-20)	GBM - Glioblastoma multiforme(93;0.0463)		CTCCACTTGGCGCACCTGGAC	0.642000													7	156	---	---	---		0	0	0.001984	0	0
C4orf22	255119	broad.mit.edu	37	4	81504291	81504291	+	Missense_Mutation	SNP	C	T	T	rs142731425	byFrequency	TCGA-BJ-A190-01A-11D-A13W-08	TCGA-BJ-A190-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd26a8e5-dcb1-4574-bcf8-af69ffc5b4e3	a74f11fa-c6e1-4b3d-991a-f3c86ae946ef	g.chr4:81504291C>T	uc003hmf.2	+	3	336	c.287C>T	c.(286-288)ACG>ATG	p.T96M	C4orf22_uc010ijp.2_Missense_Mutation_p.T96M	NM_152770	NP_689983	Q6V702	CD022_HUMAN	hypothetical protein LOC255119	96										skin(2)	2						AATTTTCTGACGGCCCTGGCA	0.353000													21	30	---	---	---		0	0	0.002299	0	0
ZSCAN12	9753	broad.mit.edu	37	6	28366081	28366081	+	Silent	SNP	C	G	G			TCGA-BJ-A190-01A-11D-A13W-08	TCGA-BJ-A190-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd26a8e5-dcb1-4574-bcf8-af69ffc5b4e3	a74f11fa-c6e1-4b3d-991a-f3c86ae946ef	g.chr6:28366081C>G	uc011dlh.1	-	2	281	c.102G>C	c.(100-102)CTG>CTC	p.L34L	ZSCAN12_uc010jre.2_Silent_p.L34L	NM_001163391	NP_001156863			zinc finger and SCAN domain containing 12												0						TGTTTTTACGCAGGTCCCAAT	0.507000													2	6	---	---	---		0	0	0.004672	0	0
DNAH11	8701	broad.mit.edu	37	7	21901480	21901480	+	Missense_Mutation	SNP	G	A	A			TCGA-BJ-A190-01A-11D-A13W-08	TCGA-BJ-A190-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd26a8e5-dcb1-4574-bcf8-af69ffc5b4e3	a74f11fa-c6e1-4b3d-991a-f3c86ae946ef	g.chr7:21901480G>A	uc003svc.2	+	70	11264	c.11233G>A	c.(11233-11235)GTG>ATG	p.V3745M		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	3745					microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						GGCTTTTAACGTGCTGTTCCA	0.483000									Kartagener_syndrome				5	91	---	---	---		0	0	0.001168	0	0
ADAM9	8754	broad.mit.edu	37	8	38876370	38876370	+	Splice_Site	SNP	A	T	T			TCGA-BJ-A190-01A-11D-A13W-08	TCGA-BJ-A190-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd26a8e5-dcb1-4574-bcf8-af69ffc5b4e3	a74f11fa-c6e1-4b3d-991a-f3c86ae946ef	g.chr8:38876370A>T	uc003xmr.2	+	7	685	c.607_splice	c.e7-2	p.R203_splice	ADAM9_uc011lcf.1_Splice_Site|ADAM9_uc011lcg.1_Splice_Site|ADAM9_uc010lwr.2_Splice_Site	NM_003816	NP_003807	Q13443	ADAM9_HUMAN	ADAM metallopeptidase domain 9 isoform 1						activation of MAPKK activity|cell-cell adhesion mediated by integrin|cell-matrix adhesion|keratinocyte differentiation|monocyte activation|PMA-inducible membrane protein ectodomain proteolysis|PMA-inducible membrane protein ectodomain proteolysis|positive regulation of cell adhesion mediated by integrin|positive regulation of keratinocyte migration|positive regulation of macrophage fusion|positive regulation of membrane protein ectodomain proteolysis|positive regulation of protein secretion|response to calcium ion|response to glucocorticoid stimulus|response to hydrogen peroxide|response to manganese ion|response to tumor necrosis factor|transforming growth factor beta receptor signaling pathway	extracellular space|extracellular space|integral to membrane|intrinsic to external side of plasma membrane	collagen binding|integrin binding|laminin binding|metalloendopeptidase activity|protein kinase C binding|SH3 domain binding|zinc ion binding			ovary(1)|central_nervous_system(1)	2		all_lung(54;0.00292)|Lung NSC(58;0.0115)|Hepatocellular(245;0.0153)	LUSC - Lung squamous cell carcinoma(45;2.74e-07)			TGTTTTTGACAGAGAAGAAGA	0.383000													14	58	---	---	---		0	0	0.002450	0	0
Unknown	0	broad.mit.edu	37	10	32391368	32391368	+	IGR	DEL	T	-	-			TCGA-BJ-A190-01A-11D-A13W-08	TCGA-BJ-A190-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd26a8e5-dcb1-4574-bcf8-af69ffc5b4e3	a74f11fa-c6e1-4b3d-991a-f3c86ae946ef	g.chr10:32391368delT								KIF5B (45997 upstream) : EPC1 (166491 downstream)																							CACCTATGTCTTTTTTTTTTT	0.353													5	9	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42596908	42596910	+	IGR	DEL	TCA	-	-	rs74210869		TCGA-BJ-A190-01A-11D-A13W-08	TCGA-BJ-A190-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd26a8e5-dcb1-4574-bcf8-af69ffc5b4e3	a74f11fa-c6e1-4b3d-991a-f3c86ae946ef	g.chr10:42596908_42596910delTCA								None (None upstream) : LOC441666 (230405 downstream)																							ggaatcatcttcaaatggaaagg	0.000													14	1317	---	---	---	---					
MUC6	4588	broad.mit.edu	37	11	1031058	1031059	+	Splice_Site	INS	-	G	G	rs140721287	by1000genomes	TCGA-BJ-A190-01A-11D-A13W-08	TCGA-BJ-A190-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd26a8e5-dcb1-4574-bcf8-af69ffc5b4e3	a74f11fa-c6e1-4b3d-991a-f3c86ae946ef	g.chr11:1031058_1031059insG	uc001lsw.2	-	6	626	c.575_splice	c.e6-1	p.G192_splice		NM_005961	NP_005952	Q6W4X9	MUC6_HUMAN	mucin 6, gastric						maintenance of gastrointestinal epithelium	extracellular region	extracellular matrix structural constituent			ovary(1)	1		all_cancers(49;3.3e-08)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		all cancers(45;1.24e-24)|BRCA - Breast invasive adenocarcinoma(625;0.00031)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)		GGAACTTGCCTGGGGTGCAGAA	0.703													5	1	---	---	---	---					
Unknown	0	broad.mit.edu	37	11	21747101	21747104	+	IGR	DEL	TGTT	-	-	rs72153174		TCGA-BJ-A190-01A-11D-A13W-08	TCGA-BJ-A190-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd26a8e5-dcb1-4574-bcf8-af69ffc5b4e3	a74f11fa-c6e1-4b3d-991a-f3c86ae946ef	g.chr11:21747101_21747104delTGTT								NELL1 (149874 upstream) : ANO5 (467618 downstream)																							tgtgtttgtgtgtttgtgtgtgtg	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	11	49327166	49327167	+	IGR	INS	-	A	A			TCGA-BJ-A190-01A-11D-A13W-08	TCGA-BJ-A190-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd26a8e5-dcb1-4574-bcf8-af69ffc5b4e3	a74f11fa-c6e1-4b3d-991a-f3c86ae946ef	g.chr11:49327166_49327167insA								FOLH1 (96944 upstream) : LOC440040 (252913 downstream)																							GTAAAGTTAGcaaaaaaaaaaa	0.208													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	11	51593175	51593175	+	IGR	DEL	G	-	-			TCGA-BJ-A190-01A-11D-A13W-08	TCGA-BJ-A190-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd26a8e5-dcb1-4574-bcf8-af69ffc5b4e3	a74f11fa-c6e1-4b3d-991a-f3c86ae946ef	g.chr11:51593175delG								OR4C46 (76966 upstream) : None (None downstream)																							agaccacaaagtggtgcaaat	0.000													7	9	---	---	---	---					
R3HDM2	22864	broad.mit.edu	37	12	57674205	57674207	+	In_Frame_Del	DEL	TGC	-	-			TCGA-BJ-A190-01A-11D-A13W-08	TCGA-BJ-A190-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd26a8e5-dcb1-4574-bcf8-af69ffc5b4e3	a74f11fa-c6e1-4b3d-991a-f3c86ae946ef	g.chr12:57674205_57674207delTGC	uc009zpm.1	-	12	1271_1273	c.1236_1238delGCA	c.(1234-1239)CAGCAA>CAA	p.412_413QQ>Q	R3HDM2_uc010srn.1_RNA|R3HDM2_uc001snu.2_In_Frame_Del_p.73_74QQ>Q|R3HDM2_uc001snr.2_In_Frame_Del_p.139_140QQ>Q|R3HDM2_uc001sns.2_In_Frame_Del_p.412_413QQ>Q|R3HDM2_uc001snt.2_In_Frame_Del_p.426_427QQ>Q|R3HDM2_uc009zpn.1_In_Frame_Del_p.35_36QQ>Q	NM_014925	NP_055740	Q9Y2K5	R3HD2_HUMAN	R3H domain containing 2	412_413	Gln-rich.					nucleus	nucleic acid binding			ovary(2)	2						AGCAGGAAGTtgctgctgctgct	0.488													7	177	---	---	---	---					
Unknown	0	broad.mit.edu	37	12	76082490	76082491	+	IGR	INS	-	T	T	rs141632958		TCGA-BJ-A190-01A-11D-A13W-08	TCGA-BJ-A190-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd26a8e5-dcb1-4574-bcf8-af69ffc5b4e3	a74f11fa-c6e1-4b3d-991a-f3c86ae946ef	g.chr12:76082490_76082491insT								KRR1 (177072 upstream) : PHLDA1 (336737 downstream)																							cattctTTTTCTTTTTTTTTTT	0.218													6	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	12	80632597	80632598	+	IGR	DEL	TG	-	-			TCGA-BJ-A190-01A-11D-A13W-08	TCGA-BJ-A190-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd26a8e5-dcb1-4574-bcf8-af69ffc5b4e3	a74f11fa-c6e1-4b3d-991a-f3c86ae946ef	g.chr12:80632597_80632598delTG								PPP1R12A (303362 upstream) : PTPRQ (205528 downstream)																							TACACCTATTtgtgtgtgtgtg	0.302													4	8	---	---	---	---					
FOXO1	2308	broad.mit.edu	37	13	41133745	41133745	+	Frame_Shift_Del	DEL	A	-	-			TCGA-BJ-A190-01A-11D-A13W-08	TCGA-BJ-A190-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd26a8e5-dcb1-4574-bcf8-af69ffc5b4e3	a74f11fa-c6e1-4b3d-991a-f3c86ae946ef	g.chr13:41133745delA	uc001uxl.3	-	2	2268	c.1883delT	c.(1882-1884)TTGfs	p.L628fs	FOXO1_uc010acc.1_Frame_Shift_Del_p.L443fs	NM_002015	NP_002006	Q12778	FOXO1_HUMAN	forkhead box O1	628					anti-apoptosis|blood vessel development|embryo development|endocrine pancreas development|insulin receptor signaling pathway|negative regulation of stress-activated MAPK cascade|nerve growth factor receptor signaling pathway|pattern specification process|phosphatidylinositol-mediated signaling|positive regulation of transcription from RNA polymerase II promoter|regulation of cell proliferation|regulation of sequence-specific DNA binding transcription factor activity|response to DNA damage stimulus|tissue development	cytosol|transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|protein kinase binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription factor binding		PAX3/FOXO1(749)|PAX7/FOXO1(197)	soft_tissue(946)|lung(1)|central_nervous_system(1)	948		Lung NSC(96;1.18e-05)|Breast(139;0.00394)|Prostate(109;0.0181)|Lung SC(185;0.0262)|Hepatocellular(188;0.194)		all cancers(112;7.32e-09)|Epithelial(112;2.87e-06)|OV - Ovarian serous cystadenocarcinoma(117;6.98e-05)|GBM - Glioblastoma multiforme(144;0.00394)|BRCA - Breast invasive adenocarcinoma(63;0.0815)		GTTAAAATCCAATGTATCTCC	0.478													39	143	---	---	---	---					
PPCDC	60490	broad.mit.edu	37	15	75315289	75315289	+	5'Flank	DEL	A	-	-			TCGA-BJ-A190-01A-11D-A13W-08	TCGA-BJ-A190-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd26a8e5-dcb1-4574-bcf8-af69ffc5b4e3	a74f11fa-c6e1-4b3d-991a-f3c86ae946ef	g.chr15:75315289delA	uc002azo.2	+							NM_021823	NP_068595	Q96CD2	COAC_HUMAN	phosphopantothenoylcysteine decarboxylase						coenzyme A biosynthetic process|pantothenate metabolic process	cytosol	phosphopantothenoylcysteine decarboxylase activity				0						accctgtctcaaaaaaaaaaa	0.169													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	46417207	46417216	+	IGR	DEL	TTCGAATGGA	-	-	rs60768439		TCGA-BJ-A190-01A-11D-A13W-08	TCGA-BJ-A190-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd26a8e5-dcb1-4574-bcf8-af69ffc5b4e3	a74f11fa-c6e1-4b3d-991a-f3c86ae946ef	g.chr16:46417207_46417216delTTCGAATGGA								None (None upstream) : ANKRD26P1 (86033 downstream)																							tggAATCATCTtcgaatggaattgaatgga	0.052													13	60	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	8102780	8102780	+	IGR	DEL	T	-	-			TCGA-BJ-A190-01A-11D-A13W-08	TCGA-BJ-A190-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd26a8e5-dcb1-4574-bcf8-af69ffc5b4e3	a74f11fa-c6e1-4b3d-991a-f3c86ae946ef	g.chr17:8102780delT								C17orf59 (9216 upstream) : AURKB (5270 downstream)																							CCCTGGCCTATTTTTTTTTTT	0.358													5	6	---	---	---	---					
POLDIP2	26073	broad.mit.edu	37	17	26684529	26684530	+	Splice_Site	INS	-	GC	GC	rs147190972	by1000genomes	TCGA-BJ-A190-01A-11D-A13W-08	TCGA-BJ-A190-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd26a8e5-dcb1-4574-bcf8-af69ffc5b4e3	a74f11fa-c6e1-4b3d-991a-f3c86ae946ef	g.chr17:26684529_26684530insGC	uc002haz.2	-	1	74	c.-58_splice	c.e1+1		POLDIP2_uc010wag.1_RNA|TMEM199_uc002hba.2_5'Flank|SARM1_uc010wah.1_5'Flank	NM_015584	NP_056399	Q9Y2S7	PDIP2_HUMAN	DNA polymerase delta interacting protein 2							mitochondrial nucleoid|nucleus					0	all_lung(13;0.000354)|Lung NSC(42;0.00115)			UCEC - Uterine corpus endometrioid carcinoma (53;0.154)		GCGGCCGGGCGGTTCCGCCCCA	0.767													5	1	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	32560352	32560353	+	IGR	INS	-	AGAA	AGAA	rs140694482	by1000genomes	TCGA-BJ-A190-01A-11D-A13W-08	TCGA-BJ-A190-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd26a8e5-dcb1-4574-bcf8-af69ffc5b4e3	a74f11fa-c6e1-4b3d-991a-f3c86ae946ef	g.chr17:32560352_32560353insAGAA								ACCN1 (76527 upstream) : CCL2 (21943 downstream)																							gaaagagagagagaaagaaaga	0.000													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	9324429	9324431	+	IGR	DEL	AAC	-	-			TCGA-BJ-A190-01A-11D-A13W-08	TCGA-BJ-A190-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd26a8e5-dcb1-4574-bcf8-af69ffc5b4e3	a74f11fa-c6e1-4b3d-991a-f3c86ae946ef	g.chr19:9324429_9324431delAAC								OR7D2 (24936 upstream) : OR7D4 (144 downstream)																							caataacaataacaacaacaaaC	0.158													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	27732091	27732091	+	IGR	DEL	G	-	-	rs74188962		TCGA-BJ-A190-01A-11D-A13W-08	TCGA-BJ-A190-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd26a8e5-dcb1-4574-bcf8-af69ffc5b4e3	a74f11fa-c6e1-4b3d-991a-f3c86ae946ef	g.chr19:27732091delG								None (None upstream) : LOC148189 (549311 downstream)																							taacttccttgtgttgtgtgt	0.000													8	3710	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	27738432	27738435	+	IGR	DEL	TGTT	-	-			TCGA-BJ-A190-01A-11D-A13W-08	TCGA-BJ-A190-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd26a8e5-dcb1-4574-bcf8-af69ffc5b4e3	a74f11fa-c6e1-4b3d-991a-f3c86ae946ef	g.chr19:27738432_27738435delTGTT								None (None upstream) : LOC148189 (542967 downstream)																							ggaaacactctgtttgtaaagtct	0.000													7	474	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	208973291	208973292	+	IGR	INS	-	T	T	rs150685135	by1000genomes	TCGA-BJ-A190-01A-11D-A13W-08	TCGA-BJ-A190-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd26a8e5-dcb1-4574-bcf8-af69ffc5b4e3	a74f11fa-c6e1-4b3d-991a-f3c86ae946ef	g.chr2:208973291_208973292insT								PLEKHM3 (83007 upstream) : CRYGD (13040 downstream)																							GACCTAAAAAATTTTTTTTCTA	0.272													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	3	81882173	81882174	+	IGR	INS	-	TTCC	TTCC			TCGA-BJ-A190-01A-11D-A13W-08	TCGA-BJ-A190-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd26a8e5-dcb1-4574-bcf8-af69ffc5b4e3	a74f11fa-c6e1-4b3d-991a-f3c86ae946ef	g.chr3:81882173_81882174insTTCC								GBE1 (71223 upstream) : None (None downstream)																							ttatcttccttttccttccttc	0.074													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	5	60863886	60863893	+	IGR	DEL	CTTCCTTC	-	-	rs34724085		TCGA-BJ-A190-01A-11D-A13W-08	TCGA-BJ-A190-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd26a8e5-dcb1-4574-bcf8-af69ffc5b4e3	a74f11fa-c6e1-4b3d-991a-f3c86ae946ef	g.chr5:60863886_60863893delCTTCCTTC								ZSWIM6 (21888 upstream) : FLJ37543 (69743 downstream)																							ctttctttctcttccttccttccttcct	0.005													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	5	61129041	61129044	+	IGR	DEL	GAAG	-	-	rs113143136		TCGA-BJ-A190-01A-11D-A13W-08	TCGA-BJ-A190-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd26a8e5-dcb1-4574-bcf8-af69ffc5b4e3	a74f11fa-c6e1-4b3d-991a-f3c86ae946ef	g.chr5:61129041_61129044delGAAG								FLJ37543 (126679 upstream) : KIF2A (472945 downstream)																							CCCTAAAaaagaaggaaggaagga	0.172													3	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	27293740	27293740	+	IGR	DEL	A	-	-			TCGA-BJ-A190-01A-11D-A13W-08	TCGA-BJ-A190-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd26a8e5-dcb1-4574-bcf8-af69ffc5b4e3	a74f11fa-c6e1-4b3d-991a-f3c86ae946ef	g.chr6:27293740delA								FKSG83 (1 upstream) : ZNF204P (31862 downstream)																							accctgtctgaaaaaaaaaaa	0.080													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	169241207	169241212	+	IGR	DEL	GAGGAC	-	-	rs71657462	by1000genomes	TCGA-BJ-A190-01A-11D-A13W-08	TCGA-BJ-A190-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd26a8e5-dcb1-4574-bcf8-af69ffc5b4e3	a74f11fa-c6e1-4b3d-991a-f3c86ae946ef	g.chr6:169241207_169241212delGAGGAC								SMOC2 (172536 upstream) : THBS2 (374664 downstream)																							cggtgctgatgaggacgcggtgctga	0.044													2	4	---	---	---	---					
C9orf150	286343	broad.mit.edu	37	9	12775861	12775862	+	In_Frame_Ins	INS	-	GGCGGCGGC	GGCGGCGGC	rs139315731	by1000genomes	TCGA-BJ-A190-01A-11D-A13W-08	TCGA-BJ-A190-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd26a8e5-dcb1-4574-bcf8-af69ffc5b4e3	a74f11fa-c6e1-4b3d-991a-f3c86ae946ef	g.chr9:12775861_12775862insGGCGGCGGC	uc003zkw.2	+	1	850_851	c.147_148insGGCGGCGGC	c.(145-150)insGGCGGCGGC	p.55_56insGGG		NM_203403	NP_981948	Q8IV03	CI150_HUMAN	hypothetical protein LOC286343	58_59	Gly-rich.										0				GBM - Glioblastoma multiforme(1;1.64e-13)		gcggtggtggtggcggcggcgg	0.505													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	68421405	68421406	+	IGR	INS	-	A	A	rs145154468		TCGA-BJ-A190-01A-11D-A13W-08	TCGA-BJ-A190-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd26a8e5-dcb1-4574-bcf8-af69ffc5b4e3	a74f11fa-c6e1-4b3d-991a-f3c86ae946ef	g.chr9:68421405_68421406insA								FAM27B (627216 upstream) : MIR1299 (580833 downstream)																							GGAAAAGAAATACACATACATA	0.411													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	68426353	68426353	+	IGR	DEL	G	-	-			TCGA-BJ-A190-01A-11D-A13W-08	TCGA-BJ-A190-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd26a8e5-dcb1-4574-bcf8-af69ffc5b4e3	a74f11fa-c6e1-4b3d-991a-f3c86ae946ef	g.chr9:68426353delG								FAM27B (632164 upstream) : MIR1299 (575886 downstream)																							TCTTGAAGGCGGTGTTCCTCA	0.313													4	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	70117457	70117458	+	IGR	INS	-	G	G			TCGA-BJ-A190-01A-11D-A13W-08	TCGA-BJ-A190-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd26a8e5-dcb1-4574-bcf8-af69ffc5b4e3	a74f11fa-c6e1-4b3d-991a-f3c86ae946ef	g.chr9:70117457_70117458insG								LOC100133920 (452508 upstream) : FOXD4L5 (58251 downstream)																							aagaaagaaaaaGAGAGAGAGA	0.074													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	138016546	138016549	+	IGR	DEL	AAAC	-	-	rs71979181		TCGA-BJ-A190-01A-11D-A13W-08	TCGA-BJ-A190-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd26a8e5-dcb1-4574-bcf8-af69ffc5b4e3	a74f11fa-c6e1-4b3d-991a-f3c86ae946ef	g.chr9:138016546_138016549delAAAC								OLFM1 (3515 upstream) : KIAA0649 (355099 downstream)																							agaaagaaagaaacaaagaaagaa	0.083													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	X	134719393	134719394	+	IGR	DEL	GA	-	-			TCGA-BJ-A190-01A-11D-A13W-08	TCGA-BJ-A190-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd26a8e5-dcb1-4574-bcf8-af69ffc5b4e3	a74f11fa-c6e1-4b3d-991a-f3c86ae946ef	g.chrX:134719393_134719394delGA								DDX26B (2934 upstream) : CT45A1 (127791 downstream)																							gaggggaggggagagagagaag	0.213													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	Y	13692008	13692008	+	IGR	DEL	A	-	-			TCGA-BJ-A190-01A-11D-A13W-08	TCGA-BJ-A190-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd26a8e5-dcb1-4574-bcf8-af69ffc5b4e3	a74f11fa-c6e1-4b3d-991a-f3c86ae946ef	g.chrY:13692008delA								None (None upstream) : None (None downstream)																							aatggaatttaatggaatgga	0.000													3	6	---	---	---	---					
