Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
Unknown	0	broad.mit.edu	37	11	71513918	71513918	+	RNA	SNP	A	G	G			TCGA-BJ-A28T-01A-11D-A16O-08	TCGA-BJ-A28T-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	4f018056-6042-4651-819c-869d8027a17e	530e1ddc-1a12-416e-9172-4a52473e61eb	g.chr11:71513918A>G	uc001oqx.1	-	3		c.682T>C								Homo sapiens cDNA clone IMAGE:5297769.																		TGAAGTTCACAGCACACGCAG	0.572000													3	50	---	---	---	---	0	0	6.4e-05	0	0
ATM	472	broad.mit.edu	37	11	108200988	108200988	+	Missense_Mutation	SNP	T	C	C			TCGA-BJ-A28T-01A-11D-A16O-08	TCGA-BJ-A28T-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	4f018056-6042-4651-819c-869d8027a17e	530e1ddc-1a12-416e-9172-4a52473e61eb	g.chr11:108200988T>C	uc001pkb.1	+	50	7740	c.7355T>C	c.(7354-7356)CTG>CCG	p.L2452P	ATM_uc009yxr.1_Missense_Mutation_p.L2452P|C11orf65_uc010rvx.1_Intron|ATM_uc001pke.1_Missense_Mutation_p.L1104P|ATM_uc001pkg.1_Missense_Mutation_p.L809P	NM_000051	NP_000042	Q13315	ATM_HUMAN	ataxia telangiectasia mutated isoform 1	2452	FAT.				cell cycle arrest|cellular response to gamma radiation|DNA damage induced protein phosphorylation|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|double-strand break repair via homologous recombination|G2/M transition DNA damage checkpoint|histone mRNA catabolic process|mitotic cell cycle spindle assembly checkpoint|negative regulation of B cell proliferation|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|pre-B cell allelic exclusion|protein autophosphorylation|reciprocal meiotic recombination|replicative senescence	cytoplasmic membrane-bounded vesicle|nucleoplasm	1-phosphatidylinositol-3-kinase activity|ATP binding|DNA binding|DNA-dependent protein kinase activity|identical protein binding|protein complex binding|protein dimerization activity|protein N-terminus binding			haematopoietic_and_lymphoid_tissue(174)|lung(25)|breast(15)|large_intestine(9)|ovary(5)|kidney(5)|central_nervous_system(4)|upper_aerodigestive_tract(1)|stomach(1)|NS(1)	240		all_cancers(61;9.64e-12)|all_epithelial(67;9.97e-08)|Melanoma(852;2.55e-06)|Acute lymphoblastic leukemia(157;3.95e-05)|all_hematologic(158;0.00014)|Breast(348;0.0258)|all_neural(303;0.072)		Epithelial(105;9.05e-06)|BRCA - Breast invasive adenocarcinoma(274;1.06e-05)|all cancers(92;0.000208)|Colorectal(284;0.116)|OV - Ovarian serous cystadenocarcinoma(223;0.147)		GAATTAGCCCTGCGTGCACTG	0.373000			D|Mis|N|F|S		T-PLL	leukemia|lymphoma|medulloblastoma|glioma		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Ataxia_Telangiectasia	TSP Lung(14;0.12)			3	67	---	---	---	---	0	0	6.4e-05	0	0
NLRP1	22861	broad.mit.edu	37	17	5418798	5418798	+	Missense_Mutation	SNP	C	T	T			TCGA-BJ-A28T-01A-11D-A16O-08	TCGA-BJ-A28T-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	4f018056-6042-4651-819c-869d8027a17e	530e1ddc-1a12-416e-9172-4a52473e61eb	g.chr17:5418798C>T	uc002gci.2	-	16	4652	c.4097G>A	c.(4096-4098)CGC>CAC	p.R1366H	NLRP1_uc002gcg.1_Intron|NLRP1_uc002gck.2_Missense_Mutation_p.R1322H|NLRP1_uc002gcj.2_Missense_Mutation_p.R1336H|NLRP1_uc002gcl.2_Missense_Mutation_p.R1292H|NLRP1_uc002gch.3_Missense_Mutation_p.R1322H	NM_033004	NP_127497	Q9C000	NALP1_HUMAN	NLR family, pyrin domain containing 1 isoform 1	1366					defense response to bacterium|induction of apoptosis|neuron apoptosis|positive regulation of interleukin-1 beta secretion|response to muramyl dipeptide	cytoplasm|NALP1 inflammasome complex|nucleus	ATP binding|caspase activator activity|enzyme binding|protein domain specific binding			lung(4)|breast(2)|ovary(1)|central_nervous_system(1)|skin(1)	9		Colorectal(1115;3.48e-05)				CTGACCTATGCGGGCTGGAGG	0.507000													4	70	---	---	---	---	0	0	0.000602214	0	0
SLC35D2	11046	broad.mit.edu	37	9	99083567	99083567	+	Missense_Mutation	SNP	T	C	C			TCGA-BJ-A28T-01A-11D-A16O-08	TCGA-BJ-A28T-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	4f018056-6042-4651-819c-869d8027a17e	530e1ddc-1a12-416e-9172-4a52473e61eb	g.chr9:99083567T>C	uc004awc.2	-	12	1047	c.971A>G	c.(970-972)AAA>AGA	p.K324R	SLC35D2_uc010msd.2_RNA|SLC35D2_uc010mse.2_Missense_Mutation_p.K277R|SLC35D2_uc010msf.2_Missense_Mutation_p.K236R|SLC35D2_uc004awd.2_Silent_p.*166*	NM_007001	NP_008932	Q76EJ3	S35D2_HUMAN	solute carrier family 35, member D2	324	Cytoplasmic (Potential).					Golgi membrane|integral to membrane	nucleotide-sugar transmembrane transporter activity				0		Acute lymphoblastic leukemia(62;0.0167)				ACCCACAGGTTTAGGTTTTAA	0.448000													6	68	---	---	---	---	0	0	0.00116845	0	0
Unknown	0	broad.mit.edu	37	10	42681216	42681216	+	IGR	DEL	T	-	-			TCGA-BJ-A28T-01A-11D-A16O-08	TCGA-BJ-A28T-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	4f018056-6042-4651-819c-869d8027a17e	530e1ddc-1a12-416e-9172-4a52473e61eb	g.chr10:42681216delT								None (None upstream) : LOC441666 (146099 downstream)																							CTTATTACTGTCAACAGAGTG	0.488													7	230	---	---	---	---					
MIR620	693205	broad.mit.edu	37	12	116586415	116586418	+	RNA	DEL	TATA	-	-	rs10549054		TCGA-BJ-A28T-01A-11D-A16O-08	TCGA-BJ-A28T-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	4f018056-6042-4651-819c-869d8027a17e	530e1ddc-1a12-416e-9172-4a52473e61eb	g.chr12:116586415_116586418delTATA	hsa-mir-620|MI0003634	-			c.42_45delTATA			MED13L_uc001tvw.2_Intron																	0						tggagatatctatatatatatata	0.196													3	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	13967000	13967002	+	IGR	DEL	GTG	-	-			TCGA-BJ-A28T-01A-11D-A16O-08	TCGA-BJ-A28T-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	4f018056-6042-4651-819c-869d8027a17e	530e1ddc-1a12-416e-9172-4a52473e61eb	g.chr16:13967000_13967002delGTG								SHISA9 (632728 upstream) : ERCC4 (47012 downstream)																							ggtggtggtagtggtggtggtgg	0.212													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	57355179	57355179	+	IGR	DEL	G	-	-			TCGA-BJ-A28T-01A-11D-A16O-08	TCGA-BJ-A28T-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	4f018056-6042-4651-819c-869d8027a17e	530e1ddc-1a12-416e-9172-4a52473e61eb	g.chr16:57355179delG								PLLP (36608 upstream) : CCL22 (37539 downstream)																							aaaaaaaaaagaaaagaaaCA	0.134													5	9	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	89670053	89670054	+	IGR	INS	-	A	A			TCGA-BJ-A28T-01A-11D-A16O-08	TCGA-BJ-A28T-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	4f018056-6042-4651-819c-869d8027a17e	530e1ddc-1a12-416e-9172-4a52473e61eb	g.chr16:89670053_89670054insA								CPNE7 (6400 upstream) : DPEP1 (9662 downstream)																							GGGGGCTGGAGGGGAGCCCTGG	0.748													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	20634737	20634737	+	IGR	DEL	T	-	-			TCGA-BJ-A28T-01A-11D-A16O-08	TCGA-BJ-A28T-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	4f018056-6042-4651-819c-869d8027a17e	530e1ddc-1a12-416e-9172-4a52473e61eb	g.chr17:20634737delT								LGALS9B (263889 upstream) : CCDC144NL (131973 downstream)																							CCTCGCCCGCTTTTTTTTTTT	0.338													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	18	5890004	5890005	+	IGR	INS	-	A	A	rs142173071		TCGA-BJ-A28T-01A-11D-A16O-08	TCGA-BJ-A28T-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	4f018056-6042-4651-819c-869d8027a17e	530e1ddc-1a12-416e-9172-4a52473e61eb	g.chr18:5890004_5890005insA								EPB41L3 (259362 upstream) : TMEM200C (179 downstream)																							CTAGTTTGCTTAAAAAAAAAAA	0.337													6	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	133018713	133018714	+	IGR	DEL	GG	-	-	rs144729406		TCGA-BJ-A28T-01A-11D-A16O-08	TCGA-BJ-A28T-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	4f018056-6042-4651-819c-869d8027a17e	530e1ddc-1a12-416e-9172-4a52473e61eb	g.chr2:133018713_133018714delGG								NCRNA00164 (3171 upstream) : GPR39 (155433 downstream)																							TGGGCGGGGTGGTGGGGGGTGC	0.530													4	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	22	16419352	16419352	+	IGR	DEL	T	-	-			TCGA-BJ-A28T-01A-11D-A16O-08	TCGA-BJ-A28T-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	4f018056-6042-4651-819c-869d8027a17e	530e1ddc-1a12-416e-9172-4a52473e61eb	g.chr22:16419352delT								POTEH (131415 upstream) : OR11H1 (29474 downstream)																							GAATCGACGATTTTTTTTTTG	0.398													3	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	22	20151725	20151726	+	IGR	INS	-	ACC	ACC	rs138268702	by1000genomes	TCGA-BJ-A28T-01A-11D-A16O-08	TCGA-BJ-A28T-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	4f018056-6042-4651-819c-869d8027a17e	530e1ddc-1a12-416e-9172-4a52473e61eb	g.chr22:20151725_20151726insACC								ZDHHC8 (16196 upstream) : LOC150197 (42129 downstream)																							ccaccatcactaccaccaccac	0.025													3	4	---	---	---	---					
NAP1L5	266812	broad.mit.edu	37	4	89618484	89618486	+	In_Frame_Del	DEL	TCC	-	-			TCGA-BJ-A28T-01A-11D-A16O-08	TCGA-BJ-A28T-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	4f018056-6042-4651-819c-869d8027a17e	530e1ddc-1a12-416e-9172-4a52473e61eb	g.chr4:89618484_89618486delTCC	uc003hrx.2	-	1	538_540	c.420_422delGGA	c.(418-423)GAGGAA>GAA	p.140_141EE>E	HERC3_uc003hrw.1_Intron|HERC3_uc011cdn.1_Intron|HERC3_uc011cdo.1_Intron	NM_153757	NP_715638	Q96NT1	NP1L5_HUMAN	nucleosome assembly protein 1-like 5	140_141	Glu-rich.				nucleosome assembly	nucleus	protein binding			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(123;0.000181)		gtactcctcttcctcctcctcct	0.369													7	98	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	160319646	160319648	+	IGR	DEL	CTT	-	-	rs403644	by1000genomes	TCGA-BJ-A28T-01A-11D-A16O-08	TCGA-BJ-A28T-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	4f018056-6042-4651-819c-869d8027a17e	530e1ddc-1a12-416e-9172-4a52473e61eb	g.chr6:160319646_160319648delCTT								PNLDC1 (77911 upstream) : MAS1 (8326 downstream)																							cttcctcctccttcctcctcctc	0.000													4	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	69876385	69876386	+	IGR	INS	-	TCT	TCT			TCGA-BJ-A28T-01A-11D-A16O-08	TCGA-BJ-A28T-10A-01D-A16O-08									Somatic	Phase_I	Capture				Illumina GAIIx	4f018056-6042-4651-819c-869d8027a17e	530e1ddc-1a12-416e-9172-4a52473e61eb	g.chr9:69876385_69876386insTCT								LOC100133920 (211436 upstream) : FOXD4L5 (299323 downstream)																							TTCTTCTCTTCTCTTCTTGTTT	0.277													6	4	---	---	---	---					
