Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
GABRD	2563	broad.mit.edu	37	1	1961681	1961681	+	Missense_Mutation	SNP	C	T	T			TCGA-BJ-A3EZ-01A-11D-A202-08	TCGA-BJ-A3EZ-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec345a2-a9b0-4c70-a967-9616460830b6	447950c6-32d0-4916-a3ca-d3d0ed83a32f	g.chr1:1961681C>T	uc001aip.2	+	9	1414	c.1319C>T	c.(1318-1320)GCG>GTG	p.A440V		NM_000815	NP_000806	O14764	GBRD_HUMAN	gamma-aminobutyric acid (GABA) A receptor, delta	440	Helical; (Probable).					cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3	all_cancers(77;0.000708)|all_epithelial(69;0.000943)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;2.7e-19)|all_lung(118;1.22e-08)|Lung NSC(185;1.24e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Medulloblastoma(700;0.123)|Lung SC(97;0.128)		Epithelial(90;2.19e-38)|OV - Ovarian serous cystadenocarcinoma(86;3.17e-24)|GBM - Glioblastoma multiforme(42;9.56e-08)|Colorectal(212;4.12e-05)|COAD - Colon adenocarcinoma(227;0.000194)|Kidney(185;0.00231)|BRCA - Breast invasive adenocarcinoma(365;0.00441)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0344)|Lung(427;0.2)		GCGGCGTTTGCGGCCGTCAAT	0.662000													4	103	---	---	---	---	0	0	0.000602	0	0
PRDM2	7799	broad.mit.edu	37	1	14075951	14075951	+	Silent	SNP	G	C	C			TCGA-BJ-A3EZ-01A-11D-A202-08	TCGA-BJ-A3EZ-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec345a2-a9b0-4c70-a967-9616460830b6	447950c6-32d0-4916-a3ca-d3d0ed83a32f	g.chr1:14075951G>C	uc001avi.2	+	6	1336	c.480G>C	c.(478-480)CGG>CGC	p.R160R	PRDM2_uc001avg.2_Silent_p.R160R|PRDM2_uc001avh.2_Silent_p.R160R|PRDM2_uc001avj.2_RNA|PRDM2_uc009vod.1_5'UTR|PRDM2_uc001avk.2_5'UTR|PRDM2_uc009voe.2_RNA|PRDM2_uc009vof.2_RNA	NM_012231	NP_036363	Q13029	PRDM2_HUMAN	retinoblastoma protein-binding zinc finger	160						Golgi apparatus|nucleus	DNA binding|histone-lysine N-methyltransferase activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1	Ovarian(185;0.249)	all_lung(284;2.56e-05)|Lung NSC(185;4.94e-05)|Renal(390;0.000147)|Breast(348;0.000162)|Colorectal(325;0.00058)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)	GBM - Glioblastoma multiforme(2;0.00182)	UCEC - Uterine corpus endometrioid carcinoma (279;0.00224)|Colorectal(212;3.23e-08)|BRCA - Breast invasive adenocarcinoma(304;2.16e-05)|COAD - Colon adenocarcinoma(227;2.53e-05)|Kidney(185;0.000762)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(313;0.00446)|READ - Rectum adenocarcinoma(331;0.0276)|Lung(427;0.145)		CCAGCGCCCGGAGCAAGCGGA	0.438000													13	6	---	---	---	---	0	0	0.001368	0	0
NBPF10	100132406	broad.mit.edu	37	1	145293460	145293460	+	Missense_Mutation	SNP	G	C	C			TCGA-BJ-A3EZ-01A-11D-A202-08	TCGA-BJ-A3EZ-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec345a2-a9b0-4c70-a967-9616460830b6	447950c6-32d0-4916-a3ca-d3d0ed83a32f	g.chr1:145293460G>C	uc001end.3	+	1	90	c.55G>C	c.(55-57)GAA>CAA	p.E19Q	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|NBPF10_uc001emp.3_Missense_Mutation_p.E19Q|NOTCH2NL_uc010oyh.1_RNA|NBPF10_uc001emq.1_Missense_Mutation_p.E19Q	NM_001039703	NP_001034792	A6NDV3	A6NDV3_HUMAN	hypothetical protein LOC100132406	19											0	all_hematologic(923;0.032)			Colorectal(1306;1.36e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)		GAACATTCTAGAAATCAACGA	0.522000													96	650	---	---	---	---	0	0	0.003610	0	0
ABL2	27	broad.mit.edu	37	1	179090742	179090742	+	Silent	SNP	C	T	T			TCGA-BJ-A3EZ-01A-11D-A202-08	TCGA-BJ-A3EZ-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec345a2-a9b0-4c70-a967-9616460830b6	447950c6-32d0-4916-a3ca-d3d0ed83a32f	g.chr1:179090742C>T	uc001gmj.3	-	5	1235	c.948G>A	c.(946-948)GTG>GTA	p.V316V	ABL2_uc010pnf.1_Silent_p.V316V|ABL2_uc010png.1_Silent_p.V295V|ABL2_uc010pnh.1_Silent_p.V295V|ABL2_uc009wxe.2_Silent_p.V295V|ABL2_uc001gmg.3_Silent_p.V301V|ABL2_uc001gmi.3_Silent_p.V301V|ABL2_uc001gmh.3_Silent_p.V280V|ABL2_uc010pne.1_Silent_p.V280V|ABL2_uc009wxf.1_Silent_p.V301V|ABL2_uc001gmk.2_Silent_p.V280V	NM_007314	NP_009298	P42684	ABL2_HUMAN	arg tyrosine kinase isoform b	316	Protein kinase.				axon guidance|cell adhesion|peptidyl-tyrosine phosphorylation|positive regulation of oxidoreductase activity|signal transduction	cytoskeleton|cytosol	ATP binding|magnesium ion binding|manganese ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(8)|breast(3)|ovary(2)|central_nervous_system(1)	14					Adenosine triphosphate(DB00171)|Dasatinib(DB01254)	TCAATGTTTTCACAGCAACTG	0.428000			T	ETV6	AML								9	232	---	---	---	---	0	0	0.006214	0	0
GNPAT	8443	broad.mit.edu	37	1	231401089	231401089	+	Missense_Mutation	SNP	T	C	C			TCGA-BJ-A3EZ-01A-11D-A202-08	TCGA-BJ-A3EZ-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec345a2-a9b0-4c70-a967-9616460830b6	447950c6-32d0-4916-a3ca-d3d0ed83a32f	g.chr1:231401089T>C	uc001hup.3	+	5	825	c.619T>C	c.(619-621)TTT>CTT	p.F207L	GNPAT_uc009xfo.1_Missense_Mutation_p.F98L|GNPAT_uc009xfp.2_Missense_Mutation_p.F146L	NM_014236	NP_055051	O15228	GNPAT_HUMAN	glyceronephosphate O-acyltransferase	207					ether lipid biosynthetic process|fatty acid metabolic process|organ morphogenesis	peroxisomal matrix|peroxisomal membrane	glycerone-phosphate O-acyltransferase activity			ovary(3)|breast(1)	4	Breast(184;0.0871)	all_cancers(173;0.2)|Prostate(94;0.183)				GTCGGGTGCCTTTTTCATGCG	0.383000													3	92	---	---	---	---	0	0	0.004672	0	0
NUDT15	55270	broad.mit.edu	37	13	48611888	48611888	+	Silent	SNP	G	A	A			TCGA-BJ-A3EZ-01A-11D-A202-08	TCGA-BJ-A3EZ-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec345a2-a9b0-4c70-a967-9616460830b6	447950c6-32d0-4916-a3ca-d3d0ed83a32f	g.chr13:48611888G>A	uc001vbw.1	+	1	186	c.6G>A	c.(4-6)ACG>ACA	p.T2T	SUCLA2_uc010tgd.1_5'UTR|NUDT15_uc001vbv.2_Silent_p.T2T	NM_018283	NP_060753	Q9NV35	NUD15_HUMAN	nudix-type motif 15	2							hydrolase activity|metal ion binding				0		all_cancers(8;3.75e-25)|all_epithelial(8;1.78e-13)|all_lung(13;2.85e-06)|Breast(56;0.000141)|all_hematologic(8;0.000219)|Lung NSC(96;0.000226)|Prostate(109;0.00132)|Acute lymphoblastic leukemia(8;0.0167)|Myeloproliferative disorder(33;0.039)|Hepatocellular(98;0.0556)|Lung SC(185;0.102)|Glioma(44;0.236)		GBM - Glioblastoma multiforme(144;4.83e-07)		GCGCTATGACGGCCAGCGCAC	0.721000											OREG0022405	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	3	0	---	---	---	---	0	0	0.004672	0	0
Unknown	0	broad.mit.edu	37	15	102296140	102296140	+	5'Flank	SNP	C	T	T			TCGA-BJ-A3EZ-01A-11D-A202-08	TCGA-BJ-A3EZ-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec345a2-a9b0-4c70-a967-9616460830b6	447950c6-32d0-4916-a3ca-d3d0ed83a32f	g.chr15:102296140C>T	uc002bxr.2	-						uc010usk.1_5'Flank|uc002bxs.2_5'Flank|uc002bxu.1_5'Flank|uc002bxv.1_5'Flank|uc002bxw.1_5'Flank|uc002bxy.1_5'Flank|uc002byb.1_5'Flank|uc002byc.2_5'Flank|uc002byh.2_5'Flank|uc002byj.2_5'Flank|uc002byl.1_5'Flank|uc010usl.1_5'Flank|uc010usn.1_5'Flank|uc002byq.2_5'Flank|uc002byu.2_RNA|uc002byv.2_RNA|uc002byx.3_5'Flank|uc002bza.2_5'Flank|uc002bzb.2_5'Flank|uc002bzc.1_5'Flank|uc002bzd.2_5'Flank|uc002bze.2_5'Flank|uc002bzg.2_5'Flank|uc002bzi.1_5'Flank|uc002bzj.2_5'Flank|uc002bzl.2_5'Flank|uc002bzm.2_5'Flank|uc002bzo.2_5'Flank|uc002bzp.2_5'Flank|uc002bzq.2_5'Flank|uc002bzr.2_5'Flank|uc002bzt.2_5'Flank|uc010usp.1_5'Flank|uc002bzu.2_5'Flank|uc002bzv.3_5'Flank|uc010usq.1_5'Flank|uc010usr.1_5'Flank|uc010uss.1_5'Flank|uc002bzz.2_5'Flank|uc002cab.2_5'Flank|uc002cac.2_5'Flank|uc010ust.1_5'Flank|uc002cad.2_5'Flank|uc010usu.1_5'Flank|uc002cae.2_5'Flank|uc002caf.2_5'Flank					DQ598276																		GTCCAACCTGCACTCGCGTGG	0.602000													7	2	---	---	---	---	0	0	0.004482	0	0
KIAA0556	23247	broad.mit.edu	37	16	27763240	27763240	+	Missense_Mutation	SNP	G	C	C			TCGA-BJ-A3EZ-01A-11D-A202-08	TCGA-BJ-A3EZ-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec345a2-a9b0-4c70-a967-9616460830b6	447950c6-32d0-4916-a3ca-d3d0ed83a32f	g.chr16:27763240G>C	uc002dow.2	+	17	3571	c.3547G>C	c.(3547-3549)GAA>CAA	p.E1183Q		NM_015202	NP_056017	O60303	K0556_HUMAN	hypothetical protein LOC23247	1183										ovary(4)|large_intestine(2)|upper_aerodigestive_tract(1)|skin(1)	8						GGGGGCTGATGAACGGGTAGG	0.612000													22	20	---	---	---	---	0	0	0.001523	0	0
ZNF48	197407	broad.mit.edu	37	16	30409512	30409512	+	Missense_Mutation	SNP	G	A	A	rs145091254		TCGA-BJ-A3EZ-01A-11D-A202-08	TCGA-BJ-A3EZ-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec345a2-a9b0-4c70-a967-9616460830b6	447950c6-32d0-4916-a3ca-d3d0ed83a32f	g.chr16:30409512G>A	uc002dya.1	+	2	1000	c.941G>A	c.(940-942)CGG>CAG	p.R314Q	ZNF48_uc002dxz.1_Missense_Mutation_p.R191Q	NM_152652	NP_689865	Q96MX3	ZNF48_HUMAN	zinc finger protein 48	314	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GAGTTTGCCCGGGGATCCGAC	0.622000													43	42	---	---	---	---	0	0	0.002522	0	0
CIRH1A	84916	broad.mit.edu	37	16	69200994	69200994	+	Missense_Mutation	SNP	A	G	G			TCGA-BJ-A3EZ-01A-11D-A202-08	TCGA-BJ-A3EZ-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec345a2-a9b0-4c70-a967-9616460830b6	447950c6-32d0-4916-a3ca-d3d0ed83a32f	g.chr16:69200994A>G	uc002ews.3	+	16	1946	c.1850A>G	c.(1849-1851)AAA>AGA	p.K617R	CIRH1A_uc002ewr.2_3'UTR|CIRH1A_uc002ewt.3_Missense_Mutation_p.K534R|CIRH1A_uc010cfi.2_Missense_Mutation_p.K419R	NM_032830	NP_116219	Q969X6	CIR1A_HUMAN	cirhin	617						nucleolus	protein binding				0				OV - Ovarian serous cystadenocarcinoma(108;0.125)		CCAAATGACAAAACCTTACTC	0.378000													59	70	---	---	---	---	0	0	0.003610	0	0
ARHGEF15	22899	broad.mit.edu	37	17	8218800	8218800	+	Silent	SNP	C	T	T			TCGA-BJ-A3EZ-01A-11D-A202-08	TCGA-BJ-A3EZ-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec345a2-a9b0-4c70-a967-9616460830b6	447950c6-32d0-4916-a3ca-d3d0ed83a32f	g.chr17:8218800C>T	uc002glc.2	+	7	1450	c.1329C>T	c.(1327-1329)TTC>TTT	p.F443F	ARHGEF15_uc002gld.2_Silent_p.F443F|ARHGEF15_uc010vuw.1_Silent_p.F332F	NM_173728	NP_776089	O94989	ARHGF_HUMAN	Rho guanine exchange factor 15	443	DH.				negative regulation of synapse maturation|regulation of Rho protein signal transduction	dendrite|intracellular	GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			ovary(2)|skin(1)	3						CCGACACCTTCGTGCTGAGCC	0.617000													50	127	---	---	---	---	0	0	0.003610	0	0
DNAH9	1770	broad.mit.edu	37	17	11757354	11757354	+	Missense_Mutation	SNP	C	T	T			TCGA-BJ-A3EZ-01A-11D-A202-08	TCGA-BJ-A3EZ-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec345a2-a9b0-4c70-a967-9616460830b6	447950c6-32d0-4916-a3ca-d3d0ed83a32f	g.chr17:11757354C>T	uc002gne.2	+	50	9610	c.9542C>T	c.(9541-9543)CCG>CTG	p.P3181L	DNAH9_uc010coo.2_Missense_Mutation_p.P2475L	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	3181	Stalk (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		TTTGGCTCTCCGCCTCTGGCC	0.572000													36	47	---	---	---	---	0	0	0.006230	0	0
FLII	2314	broad.mit.edu	37	17	18149316	18149316	+	Missense_Mutation	SNP	C	T	T			TCGA-BJ-A3EZ-01A-11D-A202-08	TCGA-BJ-A3EZ-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec345a2-a9b0-4c70-a967-9616460830b6	447950c6-32d0-4916-a3ca-d3d0ed83a32f	g.chr17:18149316C>T	uc002gsr.1	-	26	3379	c.3328G>A	c.(3328-3330)GAC>AAC	p.D1110N	FLII_uc002gsq.1_Missense_Mutation_p.D981N|FLII_uc010cpy.1_Missense_Mutation_p.D1099N|FLII_uc010vxn.1_Missense_Mutation_p.D1079N|FLII_uc010vxo.1_Missense_Mutation_p.D1055N	NM_002018	NP_002009	Q13045	FLII_HUMAN	flightless I homolog	1110	Gelsolin-like 4.				multicellular organismal development|muscle contraction|regulation of transcription, DNA-dependent|transcription, DNA-dependent	centrosome|nucleus	actin binding			central_nervous_system(1)|skin(1)	2	all_neural(463;0.228)					TCGTCAGGGTCTGATGCCCGG	0.468000													21	43	---	---	---	---	0	0	0.002780	0	0
DHX8	1659	broad.mit.edu	37	17	41585706	41585706	+	Splice_Site	SNP	G	A	A			TCGA-BJ-A3EZ-01A-11D-A202-08	TCGA-BJ-A3EZ-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec345a2-a9b0-4c70-a967-9616460830b6	447950c6-32d0-4916-a3ca-d3d0ed83a32f	g.chr17:41585706G>A	uc002idu.1	+	16	2394	c.2321_splice	c.e16-1	p.G774_splice	DHX8_uc010wif.1_Splice_Site_p.G683_splice|DHX8_uc010wig.1_Splice_Site_p.G774_splice	NM_004941	NP_004932	Q14562	DHX8_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 8							catalytic step 2 spliceosome	ATP binding|ATP-dependent RNA helicase activity|protein binding|RNA binding			ovary(2)|kidney(1)|pancreas(1)	4		Breast(137;0.00908)		BRCA - Breast invasive adenocarcinoma(366;0.08)		TCTGCTCGTAGGTGATATCCT	0.388000													43	84	---	---	---	---	0	0	0.002852	0	0
CYTH1	9267	broad.mit.edu	37	17	76695039	76695039	+	Missense_Mutation	SNP	C	T	T			TCGA-BJ-A3EZ-01A-11D-A202-08	TCGA-BJ-A3EZ-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec345a2-a9b0-4c70-a967-9616460830b6	447950c6-32d0-4916-a3ca-d3d0ed83a32f	g.chr17:76695039C>T	uc002jvw.2	-	8	633	c.562G>A	c.(562-564)GTC>ATC	p.V188I	CYTH1_uc010wtw.1_Missense_Mutation_p.V129I|CYTH1_uc010wtx.1_Missense_Mutation_p.V129I	NM_017456	NP_059430	Q15438	CYH1_HUMAN	cytohesin 1 isoform 2	188	SEC7.				regulation of ARF protein signal transduction|regulation of cell adhesion|vesicle-mediated transport	cytoplasm|plasma membrane	ARF guanyl-nucleotide exchange factor activity|protein binding			ovary(1)	1						AAGGAGAGGACGTAACAAGTA	0.478000													7	232	---	---	---	---	0	0	0.008291	0	0
ARRDC5	645432	broad.mit.edu	37	19	4891083	4891083	+	Missense_Mutation	SNP	G	A	A			TCGA-BJ-A3EZ-01A-11D-A202-08	TCGA-BJ-A3EZ-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec345a2-a9b0-4c70-a967-9616460830b6	447950c6-32d0-4916-a3ca-d3d0ed83a32f	g.chr19:4891083G>A	uc002mbm.2	-	3	1004	c.1004C>T	c.(1003-1005)CCC>CTC	p.P335L		NM_001080523	NP_001073992	A6NEK1	ARRD5_HUMAN	arrestin domain containing 5	335					signal transduction						0				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0257)		TGGGTTCACGGGTAACACTCC	0.512000													38	56	---	---	---	---	0	0	0.005524	0	0
SRC	6714	broad.mit.edu	37	20	36031692	36031692	+	Missense_Mutation	SNP	G	C	C			TCGA-BJ-A3EZ-01A-11D-A202-08	TCGA-BJ-A3EZ-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec345a2-a9b0-4c70-a967-9616460830b6	447950c6-32d0-4916-a3ca-d3d0ed83a32f	g.chr20:36031692G>C	uc002xgx.2	+	14	1970	c.1521G>C	c.(1519-1521)GAG>GAC	p.E507D	SRC_uc002xgy.2_Missense_Mutation_p.E507D	NM_005417	NP_005408	P12931	SRC_HUMAN	proto-oncogene tyrosine-protein kinase SRC	507	Protein kinase.				axon guidance|bone resorption|cell junction assembly|cellular membrane organization|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|interspecies interaction between organisms|intracellular protein kinase cascade|leukocyte migration|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of integrin activation|Ras protein signal transduction|regulation of bone resorption|regulation of vascular permeability|response to interleukin-1|signal complex assembly|T cell costimulation	caveola|cytosol|mitochondrial inner membrane	ATP binding|heme binding|integrin binding|ion channel binding|non-membrane spanning protein tyrosine kinase activity|SH2 domain binding|SH3/SH2 adaptor activity			large_intestine(10)|lung(1)|central_nervous_system(1)|endometrium(1)	13		Myeloproliferative disorder(115;0.00878)			Dasatinib(DB01254)	AGGAGCCTGAGGAGCGGCCCA	0.677000													3	15	---	---	---	---	0	0	0.004672	0	0
PIK3CA	5290	broad.mit.edu	37	3	178952074	178952074	+	Missense_Mutation	SNP	G	C	C	rs121913283		TCGA-BJ-A3EZ-01A-11D-A202-08	TCGA-BJ-A3EZ-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec345a2-a9b0-4c70-a967-9616460830b6	447950c6-32d0-4916-a3ca-d3d0ed83a32f	g.chr3:178952074G>C	uc003fjk.2	+	21	3286	c.3129G>C	c.(3127-3129)ATG>ATC	p.M1043I		NM_006218	NP_006209	P42336	PK3CA_HUMAN	phosphoinositide-3-kinase, catalytic, alpha	1043	PI3K/PI4K.		M -> I (in cancer; shows an increase in lipid kinase activity).		epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|T cell costimulation|T cell receptor signaling pathway		1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity	p.M1043I(33)|p.M1043V(14)|p.M1043T(3)		breast(1564)|large_intestine(776)|endometrium(246)|urinary_tract(195)|ovary(141)|skin(112)|stomach(98)|thyroid(77)|central_nervous_system(69)|lung(65)|upper_aerodigestive_tract(58)|haematopoietic_and_lymphoid_tissue(27)|cervix(25)|biliary_tract(22)|liver(20)|oesophagus(17)|pancreas(11)|penis(8)|pituitary(8)|autonomic_ganglia(4)|prostate(3)|kidney(2)|meninges(1)|eye(1)|NS(1)|soft_tissue(1)|bone(1)	3553	all_cancers(143;1.19e-17)|Ovarian(172;0.00769)|Breast(254;0.155)		OV - Ovarian serous cystadenocarcinoma(80;9.59e-28)|GBM - Glioblastoma multiforme(14;0.003)|BRCA - Breast invasive adenocarcinoma(182;0.0282)			TGAAACAAATGAATGATGCAC	0.368000		57	Mis		colorectal|gastric|gliobastoma|breast					HNSCC(19;0.045)|TSP Lung(28;0.18)			40	55	---	---	---	---	0	0	0.007835	0	0
MTTP	4547	broad.mit.edu	37	4	100534244	100534244	+	Missense_Mutation	SNP	G	A	A			TCGA-BJ-A3EZ-01A-11D-A202-08	TCGA-BJ-A3EZ-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec345a2-a9b0-4c70-a967-9616460830b6	447950c6-32d0-4916-a3ca-d3d0ed83a32f	g.chr4:100534244G>A	uc003hvc.3	+	16	2420	c.2164G>A	c.(2164-2166)GGC>AGC	p.G722S	MTTP_uc011cej.1_Missense_Mutation_p.G749S	NM_000253	NP_000244	P55157	MTP_HUMAN	microsomal triglyceride transfer protein large	722					lipid metabolic process|lipoprotein metabolic process	endoplasmic reticulum lumen	lipid binding|lipid transporter activity			ovary(3)|central_nervous_system(1)	4				OV - Ovarian serous cystadenocarcinoma(123;6.04e-09)	Hesperetin(DB01094)	GTCAGCATCTGGCGACCCTAT	0.343000													3	75	---	---	---	---	0	0	0.004672	0	0
ADAM29	11086	broad.mit.edu	37	4	175897117	175897117	+	Silent	SNP	T	C	C			TCGA-BJ-A3EZ-01A-11D-A202-08	TCGA-BJ-A3EZ-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec345a2-a9b0-4c70-a967-9616460830b6	447950c6-32d0-4916-a3ca-d3d0ed83a32f	g.chr4:175897117T>C	uc003iuc.2	+	5	1111	c.441T>C	c.(439-441)CAT>CAC	p.H147H	ADAM29_uc003iud.2_Silent_p.H147H|ADAM29_uc010irr.2_Silent_p.H147H|ADAM29_uc011cki.1_Silent_p.H147H	NM_014269	NP_055084	Q9UKF5	ADA29_HUMAN	ADAM metallopeptidase domain 29 preproprotein	147					proteolysis|spermatogenesis	integral to plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(5)|central_nervous_system(3)|ovary(3)|large_intestine(2)|lung(2)|pancreas(1)	16		Breast(14;0.00908)|Melanoma(52;0.00951)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;3.08e-19)|Epithelial(43;6.24e-18)|OV - Ovarian serous cystadenocarcinoma(60;1.78e-09)|STAD - Stomach adenocarcinoma(60;0.00303)|GBM - Glioblastoma multiforme(59;0.0106)|LUSC - Lung squamous cell carcinoma(193;0.0286)		CGTTTGAACATCTGGTATACA	0.368000													46	78	---	---	---	---	0	0	0.002852	0	0
MTMR12	54545	broad.mit.edu	37	5	32230250	32230250	+	Missense_Mutation	SNP	C	A	A			TCGA-BJ-A3EZ-01A-11D-A202-08	TCGA-BJ-A3EZ-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec345a2-a9b0-4c70-a967-9616460830b6	447950c6-32d0-4916-a3ca-d3d0ed83a32f	g.chr5:32230250C>A	uc003jhq.2	-	16	2048	c.1878G>T	c.(1876-1878)TTG>TTT	p.L626F	MTMR12_uc010iuk.2_Missense_Mutation_p.L572F|MTMR12_uc010iul.2_Missense_Mutation_p.L516F	NM_001040446	NP_001035536	Q9C0I1	MTMRC_HUMAN	myotubularin related protein 12	626	Myotubularin phosphatase.					cytoplasm	phosphatase activity			ovary(1)	1						GCGGTAACAACAAACCATGGT	0.483000													72	96	---	---	---	---	9.07738e-34	1.28151e-33	0.003610	1	0
CAMK2A	815	broad.mit.edu	37	5	149602592	149602592	+	Missense_Mutation	SNP	C	T	T			TCGA-BJ-A3EZ-01A-11D-A202-08	TCGA-BJ-A3EZ-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec345a2-a9b0-4c70-a967-9616460830b6	447950c6-32d0-4916-a3ca-d3d0ed83a32f	g.chr5:149602592C>T	uc003lru.2	-	17	1608	c.1393G>A	c.(1393-1395)GTC>ATC	p.V465I	CAMK2A_uc003lrs.2_Missense_Mutation_p.V176I|CAMK2A_uc003lrt.2_Missense_Mutation_p.V476I	NM_171825	NP_741960	Q9UQM7	KCC2A_HUMAN	calcium/calmodulin-dependent protein kinase II	465					interferon-gamma-mediated signaling pathway|positive regulation of NF-kappaB transcription factor activity|synaptic transmission	cell junction|cytosol|endocytic vesicle membrane|nucleoplasm|presynaptic membrane	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			large_intestine(1)	1		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TGGAAGTGGACGATCTGCCAT	0.632000													57	67	---	---	---	---	0	0	0.003610	0	0
HIST1H2BJ	8970	broad.mit.edu	37	6	27100369	27100369	+	Missense_Mutation	SNP	C	T	T			TCGA-BJ-A3EZ-01A-11D-A202-08	TCGA-BJ-A3EZ-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec345a2-a9b0-4c70-a967-9616460830b6	447950c6-32d0-4916-a3ca-d3d0ed83a32f	g.chr6:27100369C>T	uc003niv.2	-	1	207	c.161G>A	c.(160-162)GGC>GAC	p.G54D	HIST1H2BJ_uc003niu.1_RNA|HIST1H2AG_uc003niw.2_5'Flank	NM_021058	NP_066402	P06899	H2B1J_HUMAN	histone cluster 1, H2bj	54					defense response to bacterium|nucleosome assembly	nucleosome|nucleus	DNA binding				0						GGACGAAATGCCGGTGTCAGG	0.547000													5	302	---	---	---	---	0	0	0.001984	0	0
INTS1	26173	broad.mit.edu	37	7	1542823	1542823	+	Silent	SNP	G	A	A			TCGA-BJ-A3EZ-01A-11D-A202-08	TCGA-BJ-A3EZ-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec345a2-a9b0-4c70-a967-9616460830b6	447950c6-32d0-4916-a3ca-d3d0ed83a32f	g.chr7:1542823G>A	uc003skn.2	-	3	164	c.63C>T	c.(61-63)CAC>CAT	p.H21H	INTS1_uc003skq.2_Silent_p.H21H	NM_001080453	NP_001073922	Q8N201	INT1_HUMAN	integrator complex subunit 1	21					snRNA processing	integral to membrane|integrator complex|nuclear membrane					0		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0181)|OV - Ovarian serous cystadenocarcinoma(56;6.99e-15)		CTGGGGGAGGGTGCCCTGCAG	0.473000													30	50	---	---	---	---	0	0	0.003755	0	0
CLIP2	7461	broad.mit.edu	37	7	73731926	73731926	+	Missense_Mutation	SNP	C	G	G			TCGA-BJ-A3EZ-01A-11D-A202-08	TCGA-BJ-A3EZ-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec345a2-a9b0-4c70-a967-9616460830b6	447950c6-32d0-4916-a3ca-d3d0ed83a32f	g.chr7:73731926C>G	uc003uam.2	+	2	377	c.50C>G	c.(49-51)TCC>TGC	p.S17C	CLIP2_uc003uan.2_Missense_Mutation_p.S17C	NM_003388	NP_003379	Q9UDT6	CLIP2_HUMAN	CAP-GLY domain containing linker protein 2	17						microtubule associated complex				skin(3)	3						GGGAAGCACTCCAGCCCCATG	0.672000													65	80	---	---	---	---	0	0	0.003610	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-BJ-A3EZ-01A-11D-A202-08	TCGA-BJ-A3EZ-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec345a2-a9b0-4c70-a967-9616460830b6	447950c6-32d0-4916-a3ca-d3d0ed83a32f	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				46	63	---	---	---	---	0	0	0.003610	0	0
TMEM176B	28959	broad.mit.edu	37	7	150490266	150490266	+	Silent	SNP	G	C	C			TCGA-BJ-A3EZ-01A-11D-A202-08	TCGA-BJ-A3EZ-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec345a2-a9b0-4c70-a967-9616460830b6	447950c6-32d0-4916-a3ca-d3d0ed83a32f	g.chr7:150490266G>C	uc003wht.3	-	5	676	c.510C>G	c.(508-510)GTC>GTG	p.V170V	TMEM176B_uc003whu.3_Silent_p.V170V|TMEM176B_uc003whv.3_Silent_p.V133V|TMEM176B_uc003whw.3_Silent_p.V170V	NM_001101313	NP_001094783	Q3YBM2	T176B_HUMAN	transmembrane protein 176B isoform a	170					cell differentiation|organ morphogenesis	integral to membrane|nuclear membrane				ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		TGGTAGGGAAGACAGGGTCTG	0.507000													53	69	---	---	---	---	0	0	0.003610	0	0
ABP1	26	broad.mit.edu	37	7	150558122	150558122	+	Missense_Mutation	SNP	T	A	A			TCGA-BJ-A3EZ-01A-11D-A202-08	TCGA-BJ-A3EZ-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec345a2-a9b0-4c70-a967-9616460830b6	447950c6-32d0-4916-a3ca-d3d0ed83a32f	g.chr7:150558122T>A	uc003why.1	+	6	6299	c.2081T>A	c.(2080-2082)TTC>TAC	p.F694Y	ABP1_uc003whz.1_Missense_Mutation_p.F694Y|ABP1_uc003wia.1_Missense_Mutation_p.F713Y	NM_001091	NP_001082	P19801	ABP1_HUMAN	amiloride binding protein 1 precursor	694					amine metabolic process	extracellular space|peroxisome	copper ion binding|diamine oxidase activity|heparin binding|histamine oxidase activity|methylputrescine oxidase activity|primary amine oxidase activity|propane-1,3-diamine oxidase activity|quinone binding			ovary(2)|breast(2)|skin(2)	6	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	Amiloride(DB00594)|Spermine(DB00127)	TCCGTGGGCTTCCTGCTCCGG	0.627000													41	50	---	---	---	---	0	0	0.006999	0	0
LETM2	137994	broad.mit.edu	37	8	38264955	38264955	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BJ-A3EZ-01A-11D-A202-08	TCGA-BJ-A3EZ-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec345a2-a9b0-4c70-a967-9616460830b6	447950c6-32d0-4916-a3ca-d3d0ed83a32f	g.chr8:38264955G>T	uc003xlm.1	+	10	1417	c.1246G>T	c.(1246-1248)GGA>TGA	p.G416*	LETM2_uc003xll.1_Nonsense_Mutation_p.G368*|LETM2_uc003xln.1_Nonsense_Mutation_p.G260*|LETM2_uc003xlo.1_Nonsense_Mutation_p.G260*	NM_144652	NP_653253	Q2VYF4	LETM2_HUMAN	leucine zipper-EF-hand containing transmembrane	463	Mitochondrial matrix (Potential).					integral to membrane|mitochondrial inner membrane					0	all_cancers(2;6.77e-47)|all_epithelial(2;1.01e-50)|all_lung(3;1.25e-23)|Lung NSC(2;2.76e-23)|Colorectal(12;0.000442)|Esophageal squamous(3;0.00202)	all_lung(54;0.0657)|Hepatocellular(245;0.152)|Lung NSC(58;0.175)	Epithelial(3;1.17e-42)|all cancers(3;5.44e-38)|BRCA - Breast invasive adenocarcinoma(5;5.44e-27)|LUSC - Lung squamous cell carcinoma(2;7.12e-25)|Lung(2;4.49e-22)|COAD - Colon adenocarcinoma(9;0.114)			ATTACCTAAAGGACCCATCAC	0.388000													68	113	---	---	---	---	6.88731e-43	1.00179e-42	0.003610	1	0
USP9Y	8287	broad.mit.edu	37	Y	14924964	14924964	+	Missense_Mutation	SNP	A	C	C			TCGA-BJ-A3EZ-01A-11D-A202-08	TCGA-BJ-A3EZ-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec345a2-a9b0-4c70-a967-9616460830b6	447950c6-32d0-4916-a3ca-d3d0ed83a32f	g.chrY:14924964A>C	uc004fst.1	+	31	5531	c.4586A>C	c.(4585-4587)TAT>TCT	p.Y1529S	USP9Y_uc010nwu.1_RNA	NM_004654	NP_004645	O00507	USP9Y_HUMAN	ubiquitin specific protease 9, Y-linked	1529					BMP signaling pathway|protein deubiquitination|spermatogenesis|transforming growth factor beta receptor signaling pathway|ubiquitin-dependent protein catabolic process	cytoplasm	co-SMAD binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity				0						ACTGAAATGTATTACATGGGC	0.333000													29	8	---	---	---	---	0	0	0.008361	0	0
Unknown	0	broad.mit.edu	37	10	52467360	52467361	+	IGR	DEL	CA	-	-			TCGA-BJ-A3EZ-01A-11D-A202-08	TCGA-BJ-A3EZ-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec345a2-a9b0-4c70-a967-9616460830b6	447950c6-32d0-4916-a3ca-d3d0ed83a32f	g.chr10:52467360_52467361delCA								SGMS1 (82437 upstream) : ASAH2B (32335 downstream)																							AGCTGATATCcacacacacaca	0.342													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	12	116030326	116030327	+	IGR	INS	-	T	T	rs113877692		TCGA-BJ-A3EZ-01A-11D-A202-08	TCGA-BJ-A3EZ-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec345a2-a9b0-4c70-a967-9616460830b6	447950c6-32d0-4916-a3ca-d3d0ed83a32f	g.chr12:116030326_116030327insT								TBX3 (908357 upstream) : MED13L (366056 downstream)																							cctccattttcTTTTTTTTTTT	0.228													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	15	45154054	45154054	+	IGR	DEL	T	-	-			TCGA-BJ-A3EZ-01A-11D-A202-08	TCGA-BJ-A3EZ-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec345a2-a9b0-4c70-a967-9616460830b6	447950c6-32d0-4916-a3ca-d3d0ed83a32f	g.chr15:45154054delT								TRIM69 (94029 upstream) : C15orf43 (94849 downstream)																							GCCATGGAGCTTTTTTGCCTC	0.617													2	4	---	---	---	---					
ZNF337	26152	broad.mit.edu	37	20	25656557	25656557	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BJ-A3EZ-01A-11D-A202-08	TCGA-BJ-A3EZ-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec345a2-a9b0-4c70-a967-9616460830b6	447950c6-32d0-4916-a3ca-d3d0ed83a32f	g.chr20:25656557delT	uc002wva.2	-	4	1889	c.1367delA	c.(1366-1368)GAGfs	p.E456fs	uc002wuz.2_RNA|ZNF337_uc010ztg.1_Frame_Shift_Del_p.E424fs|ZNF337_uc002wvb.2_Frame_Shift_Del_p.E456fs|ZNF337_uc002wvc.2_Frame_Shift_Del_p.E456fs	NM_015655	NP_056470	Q9Y3M9	ZN337_HUMAN	zinc finger protein 337	456					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AGGCTTCTCCTCTGAGTGTGT	0.453													99	132	---	---	---	---					
SYN2	6854	broad.mit.edu	37	3	12046124	12046126	+	In_Frame_Del	DEL	AGC	-	-	rs76272937		TCGA-BJ-A3EZ-01A-11D-A202-08	TCGA-BJ-A3EZ-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec345a2-a9b0-4c70-a967-9616460830b6	447950c6-32d0-4916-a3ca-d3d0ed83a32f	g.chr3:12046124_12046126delAGC	uc003bwm.2	+	1	263_265	c.99_101delAGC	c.(97-102)CAACCG>CAG	p.P40del	SYN2_uc003bwl.1_In_Frame_Del_p.P40del	NM_133625	NP_598328	Q92777	SYN2_HUMAN	synapsin II isoform IIa	40					neurotransmitter secretion	synaptic vesicle	ATP binding|ligase activity			ovary(1)|central_nervous_system(1)	2						AGCCCCAGCAAGCGCCGAcgccg	0.345													3	4	---	---	---	---					
LATS1	9113	broad.mit.edu	37	6	150023002	150023002	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BJ-A3EZ-01A-11D-A202-08	TCGA-BJ-A3EZ-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec345a2-a9b0-4c70-a967-9616460830b6	447950c6-32d0-4916-a3ca-d3d0ed83a32f	g.chr6:150023002delT	uc003qmu.1	-	2	809	c.261delA	c.(259-261)CCAfs	p.P87fs	LATS1_uc010kif.1_5'UTR|LATS1_uc003qmv.1_Frame_Shift_Del_p.P87fs|LATS1_uc003qmw.2_Frame_Shift_Del_p.P87fs|LATS1_uc010kig.1_5'UTR	NM_004690	NP_004681	O95835	LATS1_HUMAN	LATS homolog 1	87					cell division|cytoplasmic sequestering of protein|G2/M transition of mitotic cell cycle|hippo signaling cascade|hormone-mediated signaling pathway|mitosis|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cyclin-dependent protein kinase activity|positive regulation of peptidyl-serine phosphorylation|regulation of actin filament polymerization|sister chromatid segregation	microtubule organizing center|spindle pole	ATP binding|magnesium ion binding|protein kinase binding|protein serine/threonine kinase activity			lung(5)|central_nervous_system(1)	6		Ovarian(120;0.0164)		OV - Ovarian serous cystadenocarcinoma(155;6.93e-13)|GBM - Glioblastoma multiforme(68;0.116)		CATTTGCAAATGGAAGCAGAG	0.398													47	159	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	45362789	45362791	+	IGR	DEL	TTC	-	-			TCGA-BJ-A3EZ-01A-11D-A202-08	TCGA-BJ-A3EZ-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec345a2-a9b0-4c70-a967-9616460830b6	447950c6-32d0-4916-a3ca-d3d0ed83a32f	g.chr9:45362789_45362791delTTC								FAM27C (371298 upstream) : FAM27A (364238 downstream)																							CTTCAGCCTGTTCTTCTTCAGTC	0.468													3	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	133834072	133834074	+	IGR	DEL	TGT	-	-			TCGA-BJ-A3EZ-01A-11D-A202-08	TCGA-BJ-A3EZ-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec345a2-a9b0-4c70-a967-9616460830b6	447950c6-32d0-4916-a3ca-d3d0ed83a32f	g.chr9:133834072_133834074delTGT								FIBCD1 (19617 upstream) : LAMC3 (50430 downstream)																							tcaccaccactgtcatcaccatc	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	141038135	141038135	+	IGR	DEL	G	-	-			TCGA-BJ-A3EZ-01A-11D-A202-08	TCGA-BJ-A3EZ-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	5ec345a2-a9b0-4c70-a967-9616460830b6	447950c6-32d0-4916-a3ca-d3d0ed83a32f	g.chr9:141038135delG								CACNA1B (19060 upstream) : TUBBP5 (6430 downstream)																							GCGGGTCCTTGGAAATCTGTG	0.642													7	10	---	---	---	---					
