Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
TGFBR3	7049	broad.mit.edu	37	1	92200373	92200373	+	Silent	SNP	T	C	C			TCGA-DE-A0Y2-01A-11D-A10S-08	TCGA-DE-A0Y2-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	b3423951-7bef-4dbe-be7c-c46c37ed2ffb	aef4af62-4d81-4cdb-9cd8-069dd8a3b6e7	g.chr1:92200373T>C	uc001doh.2	-	5	994	c.528A>G	c.(526-528)GAA>GAG	p.E176E	TGFBR3_uc009wde.2_5'UTR|TGFBR3_uc010osy.1_Silent_p.E134E|TGFBR3_uc001doi.2_Silent_p.E176E|TGFBR3_uc001doj.2_Silent_p.E176E	NM_003243	NP_003234	Q03167	TGBR3_HUMAN	transforming growth factor, beta receptor III	176	Extracellular (Potential).				BMP signaling pathway|cardiac epithelial to mesenchymal transition|cardiac muscle cell proliferation|cell growth|cell migration|definitive erythrocyte differentiation|heart trabecula formation|immune response|intracellular protein kinase cascade|liver development|negative regulation of cellular component movement|negative regulation of epithelial cell proliferation|palate development|pathway-restricted SMAD protein phosphorylation|response to follicle-stimulating hormone stimulus|response to luteinizing hormone stimulus|response to prostaglandin E stimulus|transforming growth factor beta receptor signaling pathway|ventricular cardiac muscle tissue morphogenesis	external side of plasma membrane|extracellular space|inhibin-betaglycan-ActRII complex|integral to plasma membrane|intracellular membrane-bounded organelle	coreceptor activity|heparin binding|PDZ domain binding|SMAD binding|transforming growth factor beta binding|transforming growth factor beta receptor activity, type III|type II transforming growth factor beta receptor binding			ovary(3)	3		all_lung(203;0.00719)|Lung NSC(277;0.0268)		all cancers(265;0.0108)|Epithelial(280;0.0825)		CTATCTTGAGTTCGGTGAATG	0.378000													13	308	---	---	---	---	0	0	0.435327	0	0
OVGP1	5016	broad.mit.edu	37	1	111965622	111965622	+	Missense_Mutation	SNP	G	C	C			TCGA-DE-A0Y2-01A-11D-A10S-08	TCGA-DE-A0Y2-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	b3423951-7bef-4dbe-be7c-c46c37ed2ffb	aef4af62-4d81-4cdb-9cd8-069dd8a3b6e7	g.chr1:111965622G>C	uc001eba.2	-	6	591	c.535C>G	c.(535-537)CTG>GTG	p.L179V	OVGP1_uc001eaz.2_Missense_Mutation_p.L141V|OVGP1_uc010owb.1_5'UTR	NM_002557	NP_002548	Q12889	OVGP1_HUMAN	oviductal glycoprotein 1 precursor	179					chitin catabolic process|female pregnancy|single fertilization	transport vesicle	cation binding|chitinase activity			ovary(4)|large_intestine(1)	5		all_cancers(81;8.18e-06)|all_epithelial(167;5.64e-06)|all_lung(203;0.000152)|Lung NSC(277;0.000302)		Lung(183;0.0253)|Colorectal(144;0.033)|all cancers(265;0.0552)|Epithelial(280;0.0802)|COAD - Colon adenocarcinoma(174;0.123)|LUSC - Lung squamous cell carcinoma(189;0.14)		GACAGCAGCAGCCTCGGGCGC	0.542000													110	106	---	---	---	---	0	0	0.870114	0	0
TRAF3IP3	80342	broad.mit.edu	37	1	209933458	209933458	+	Missense_Mutation	SNP	G	C	C			TCGA-DE-A0Y2-01A-11D-A10S-08	TCGA-DE-A0Y2-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	b3423951-7bef-4dbe-be7c-c46c37ed2ffb	aef4af62-4d81-4cdb-9cd8-069dd8a3b6e7	g.chr1:209933458G>C	uc001hho.2	+	3	364	c.74G>C	c.(73-75)CGC>CCC	p.R25P	TRAF3IP3_uc001hhl.2_Missense_Mutation_p.R25P|TRAF3IP3_uc001hhm.1_Missense_Mutation_p.R25P|TRAF3IP3_uc001hhn.2_Missense_Mutation_p.R25P|TRAF3IP3_uc009xcr.2_Missense_Mutation_p.R25P	NM_025228	NP_079504	Q9Y228	T3JAM_HUMAN	TRAF3-interacting JNK-activating modulator	25	Cytoplasmic (Potential).					integral to membrane	protein binding			large_intestine(1)|ovary(1)	2				OV - Ovarian serous cystadenocarcinoma(81;0.045)		AAGTGTGAGCGCAGGCAAGAG	0.627000													4	49	---	---	---	---	0	0	0.150653	0	0
FBXO18	84893	broad.mit.edu	37	10	5948520	5948520	+	Silent	SNP	C	T	T			TCGA-DE-A0Y2-01A-11D-A10S-08	TCGA-DE-A0Y2-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	b3423951-7bef-4dbe-be7c-c46c37ed2ffb	aef4af62-4d81-4cdb-9cd8-069dd8a3b6e7	g.chr10:5948520C>T	uc001iis.2	+	3	773	c.678C>T	c.(676-678)TTC>TTT	p.F226F	FBXO18_uc001iir.2_Silent_p.F152F|FBXO18_uc009xig.2_Silent_p.F152F|FBXO18_uc001iit.2_Silent_p.F277F	NM_178150	NP_835363	Q8NFZ0	FBX18_HUMAN	F-box only protein, helicase, 18 isoform 2	226					DNA repair	nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(2)|skin(1)	3						TGTTTGCCTTCCTCCCGGTGG	0.433000													7	142	---	---	---	---	0	0	0.278610	0	0
JMJD1C	221037	broad.mit.edu	37	10	64967027	64967027	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DE-A0Y2-01A-11D-A10S-08	TCGA-DE-A0Y2-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	b3423951-7bef-4dbe-be7c-c46c37ed2ffb	aef4af62-4d81-4cdb-9cd8-069dd8a3b6e7	g.chr10:64967027G>A	uc001jmn.2	-	10	4702	c.4402C>T	c.(4402-4404)CAA>TAA	p.Q1468*	JMJD1C_uc001jml.2_Nonsense_Mutation_p.Q1249*|JMJD1C_uc001jmm.2_Nonsense_Mutation_p.Q1180*|JMJD1C_uc010qiq.1_Nonsense_Mutation_p.Q1286*|JMJD1C_uc009xpi.2_Nonsense_Mutation_p.Q1286*|JMJD1C_uc009xpj.1_RNA|JMJD1C_uc009xpk.1_Nonsense_Mutation_p.Q505*	NM_032776	NP_116165	Q15652	JHD2C_HUMAN	jumonji domain containing 1C isoform a	1468					blood coagulation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	histone demethylase activity (H3-K9 specific)|metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|thyroid hormone receptor binding			ovary(4)|breast(1)|central_nervous_system(1)	6	Prostate(12;0.0119)|all_hematologic(501;0.191)					GAACTGGGTTGAACAACACTT	0.433000													76	98	---	---	---	---	0	0	0.870114	0	0
GPR120	338557	broad.mit.edu	37	10	95326832	95326832	+	Missense_Mutation	SNP	A	G	G			TCGA-DE-A0Y2-01A-11D-A10S-08	TCGA-DE-A0Y2-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	b3423951-7bef-4dbe-be7c-c46c37ed2ffb	aef4af62-4d81-4cdb-9cd8-069dd8a3b6e7	g.chr10:95326832A>G	uc010qnt.1	+	1	411	c.355A>G	c.(355-357)ACC>GCC	p.T119A	GPR120_uc010qnu.1_Missense_Mutation_p.T119A	NM_181745	NP_859529	Q5NUL3	O3FA1_HUMAN	G protein-coupled receptor 120	119	Helical; Name=3; (Potential).				negative regulation of cytokine secretion|negative regulation of inflammatory response|regulation of glucose transport	integral to membrane|plasma membrane	fatty acid binding				0		Colorectal(252;0.122)				CTACGTGATGACCCTGAGCGG	0.687000													18	24	---	---	---	---	0	0	0.557998	0	0
LPAR6	10161	broad.mit.edu	37	13	48985608	48985608	+	Missense_Mutation	SNP	C	T	T			TCGA-DE-A0Y2-01A-11D-A10S-08	TCGA-DE-A0Y2-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	b3423951-7bef-4dbe-be7c-c46c37ed2ffb	aef4af62-4d81-4cdb-9cd8-069dd8a3b6e7	g.chr13:48985608C>T	uc010acu.2	-	1	2046	c.952G>A	c.(952-954)GAA>AAA	p.E318K	RB1_uc001vcb.2_Intron|LPAR6_uc001vcc.1_Intron|LPAR6_uc001vce.2_Missense_Mutation_p.E318K|LPAR6_uc001vcf.2_Missense_Mutation_p.E318K	NM_001162498	NP_001155970	P43657	LPAR6_HUMAN	G-protein coupled purinergic receptor P2Y5	318	Cytoplasmic (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled	p.?(4)		ovary(4)	4						CCATGAACTTCAGAGAATCTG	0.343000													66	87	---	---	---	---	0	0	0.870114	0	0
TGDS	23483	broad.mit.edu	37	13	95248340	95248340	+	Silent	SNP	C	T	T			TCGA-DE-A0Y2-01A-11D-A10S-08	TCGA-DE-A0Y2-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	b3423951-7bef-4dbe-be7c-c46c37ed2ffb	aef4af62-4d81-4cdb-9cd8-069dd8a3b6e7	g.chr13:95248340C>T	uc001vlw.2	-	1	172	c.51G>A	c.(49-51)GCG>GCA	p.A17A	TGDS_uc001vlx.2_RNA	NM_014305	NP_055120	O95455	TGDS_HUMAN	TDP-glucose 4,6-dehydratase	17					cellular metabolic process		coenzyme binding|dTDP-glucose 4,6-dehydratase activity|protein binding				0	all_neural(89;0.0684)|Medulloblastoma(90;0.163)					GGACCCGCTTCGCAAAGCCGC	0.607000													23	25	---	---	---	---	0	0	0.717897	0	0
POMT2	29954	broad.mit.edu	37	14	77778315	77778315	+	Missense_Mutation	SNP	C	G	G			TCGA-DE-A0Y2-01A-11D-A10S-08	TCGA-DE-A0Y2-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	b3423951-7bef-4dbe-be7c-c46c37ed2ffb	aef4af62-4d81-4cdb-9cd8-069dd8a3b6e7	g.chr14:77778315C>G	uc001xti.2	-	2	511	c.310G>C	c.(310-312)GAT>CAT	p.D104H	POMT2_uc010asr.2_Intron	NM_013382	NP_037514	Q9UKY4	POMT2_HUMAN	protein-O-mannosyltransferase 2	104	Helical; (Potential).				protein O-linked glycosylation	endoplasmic reticulum membrane|integral to membrane	dolichyl-phosphate-mannose-protein mannosyltransferase activity|metal ion binding			ovary(1)	1			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0292)		GGGTGCACATCAAAGAAAAAT	0.433000													15	41	---	---	---	---	0	0	0.520397	0	0
POMT2	29954	broad.mit.edu	37	14	77778367	77778367	+	Silent	SNP	C	T	T			TCGA-DE-A0Y2-01A-11D-A10S-08	TCGA-DE-A0Y2-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	b3423951-7bef-4dbe-be7c-c46c37ed2ffb	aef4af62-4d81-4cdb-9cd8-069dd8a3b6e7	g.chr14:77778367C>T	uc001xti.2	-	2	459	c.258G>A	c.(256-258)GAG>GAA	p.E86E	POMT2_uc010asr.2_Intron	NM_013382	NP_037514	Q9UKY4	POMT2_HUMAN	protein-O-mannosyltransferase 2	86					protein O-linked glycosylation	endoplasmic reticulum membrane|integral to membrane	dolichyl-phosphate-mannose-protein mannosyltransferase activity|metal ion binding			ovary(1)	1			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0292)		CAAAGTGAGTCTCATCCCAAC	0.373000													20	36	---	---	---	---	0	0	0.608945	0	0
ATP10A	57194	broad.mit.edu	37	15	26107935	26107935	+	Silent	SNP	C	T	T			TCGA-DE-A0Y2-01A-11D-A10S-08	TCGA-DE-A0Y2-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	b3423951-7bef-4dbe-be7c-c46c37ed2ffb	aef4af62-4d81-4cdb-9cd8-069dd8a3b6e7	g.chr15:26107935C>T	uc010ayu.2	-	1	415	c.309G>A	c.(307-309)GTG>GTA	p.V103V	ATP10A_uc001zax.2_RNA	NM_024490	NP_077816	O60312	AT10A_HUMAN	ATPase, class V, type 10A	103	Helical; (Potential).				ATP biosynthetic process|regulation of cell shape	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			pancreas(2)|ovary(1)|breast(1)|liver(1)	5		all_cancers(20;5.16e-25)|all_lung(180;1.51e-14)|Acute lymphoblastic leukemia(1;2.53e-05)|all_hematologic(1;0.000267)|Breast(32;0.00125)		all cancers(64;9.48e-07)|Epithelial(43;1.69e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0252)|Lung(196;0.244)		GGAAGGCGTTCACCGCCGGCA	0.652000													6	14	---	---	---	---	0	0	0.307466	0	0
VAPA	9218	broad.mit.edu	37	18	9950521	9950521	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DE-A0Y2-01A-11D-A10S-08	TCGA-DE-A0Y2-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	b3423951-7bef-4dbe-be7c-c46c37ed2ffb	aef4af62-4d81-4cdb-9cd8-069dd8a3b6e7	g.chr18:9950521C>T	uc002kok.2	+	5	846	c.547C>T	c.(547-549)CAG>TAG	p.Q183*	VAPA_uc002koj.2_Nonsense_Mutation_p.Q228*	NM_194434	NP_919415	Q9P0L0	VAPA_HUMAN	vesicle-associated membrane protein-associated	183	Cytoplasmic (Potential).|Potential.				cell death|cellular membrane fusion|neuron projection development|positive regulation of I-kappaB kinase/NF-kappaB cascade|protein localization in endoplasmic reticulum|sphingolipid metabolic process	endoplasmic reticulum membrane|integral to membrane|plasma membrane|vesicle	protein heterodimerization activity|signal transducer activity|structural molecule activity				0						TAAAAGACTTCAGGGAGAAAT	0.378000													47	41	---	---	---	---	0	0	0.870114	0	0
RPRD1A	55197	broad.mit.edu	37	18	33606928	33606928	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DE-A0Y2-01A-11D-A10S-08	TCGA-DE-A0Y2-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	b3423951-7bef-4dbe-be7c-c46c37ed2ffb	aef4af62-4d81-4cdb-9cd8-069dd8a3b6e7	g.chr18:33606928G>A	uc002kzf.1	-	6	730	c.724C>T	c.(724-726)CGA>TGA	p.R242*	RPRD1A_uc002kze.1_Nonsense_Mutation_p.R206*|RPRD1A_uc002kzg.2_Nonsense_Mutation_p.R242*|RPRD1A_uc010dmw.2_Nonsense_Mutation_p.R206*|RPRD1A_uc010dmx.2_Nonsense_Mutation_p.R242*	NM_018170	NP_060640	Q96P16	RPR1A_HUMAN	regulation of nuclear pre-mRNA domain containing	242										ovary(1)|breast(1)	2						GCTAACATTCGAGTGAGTTGC	0.403000													6	98	---	---	---	---	0	0	0.217242	0	0
S1PR5	53637	broad.mit.edu	37	19	10625003	10625003	+	Missense_Mutation	SNP	G	A	A			TCGA-DE-A0Y2-01A-11D-A10S-08	TCGA-DE-A0Y2-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	b3423951-7bef-4dbe-be7c-c46c37ed2ffb	aef4af62-4d81-4cdb-9cd8-069dd8a3b6e7	g.chr19:10625003G>A	uc002mot.1	-	2	742	c.685C>T	c.(685-687)CGG>TGG	p.R229W	S1PR5_uc002mou.1_Missense_Mutation_p.R229W	NM_030760	NP_110387	Q9H228	S1PR5_HUMAN	endothelial differentiation, sphingolipid	229	Cytoplasmic (By similarity).					integral to membrane|plasma membrane	lysosphingolipid and lysophosphatidic acid receptor activity			central_nervous_system(1)|pancreas(1)	2						GTCCCGGGCCGTGCCGGCAGG	0.716000													2	1	---	---	---	---	0	0	0.115264	0	0
DOCK6	57572	broad.mit.edu	37	19	11333436	11333436	+	Missense_Mutation	SNP	G	C	C			TCGA-DE-A0Y2-01A-11D-A10S-08	TCGA-DE-A0Y2-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	b3423951-7bef-4dbe-be7c-c46c37ed2ffb	aef4af62-4d81-4cdb-9cd8-069dd8a3b6e7	g.chr19:11333436G>C	uc002mqs.3	-	26	3256	c.3215C>G	c.(3214-3216)CCC>CGC	p.P1072R	DOCK6_uc010xlq.1_Missense_Mutation_p.P411R	NM_020812	NP_065863	Q96HP0	DOCK6_HUMAN	dedicator of cytokinesis 6	1072					blood coagulation	cytosol	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			ovary(2)|skin(1)	3						GGACACAGAGGGGGAGGGCGA	0.612000													3	3	---	---	---	---	0	0	0.150653	0	0
ZNF564	163050	broad.mit.edu	37	19	12637690	12637690	+	Missense_Mutation	SNP	T	A	A			TCGA-DE-A0Y2-01A-11D-A10S-08	TCGA-DE-A0Y2-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	b3423951-7bef-4dbe-be7c-c46c37ed2ffb	aef4af62-4d81-4cdb-9cd8-069dd8a3b6e7	g.chr19:12637690T>A	uc002mty.2	-	4	1442	c.1232A>T	c.(1231-1233)CAC>CTC	p.H411L	ZNF709_uc002mtx.3_Intron	NM_144976	NP_659413	Q8TBZ8	ZN564_HUMAN	zinc finger protein 564	411	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						AGTTCTTTCGTGTATTTGAAA	0.408000													26	246	---	---	---	---	0	0	0.681144	0	0
SPIB	6689	broad.mit.edu	37	19	50931366	50931366	+	Missense_Mutation	SNP	G	A	A			TCGA-DE-A0Y2-01A-11D-A10S-08	TCGA-DE-A0Y2-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	b3423951-7bef-4dbe-be7c-c46c37ed2ffb	aef4af62-4d81-4cdb-9cd8-069dd8a3b6e7	g.chr19:50931366G>A	uc002psd.2	+	6	587	c.562G>A	c.(562-564)GTG>ATG	p.V188M	SPIB_uc002pse.2_3'UTR|SPIB_uc010ycc.1_Missense_Mutation_p.V97M	NM_003121	NP_003112	Q01892	SPIB_HUMAN	Spi-B transcription factor (Spi-1/PU.1 related)	188	ETS.				regulation of transcription from RNA polymerase II promoter	cytoplasm|microtubule cytoskeleton|nucleus	sequence-specific DNA binding			lung(1)|kidney(1)	2		all_neural(266;0.131)		OV - Ovarian serous cystadenocarcinoma(262;0.00757)|GBM - Glioblastoma multiforme(134;0.0186)		GCGTGAGTGCGTGTGGTGGGT	0.682000													3	3	---	---	---	---	0	0	0.184627	0	0
FAM84A	151354	broad.mit.edu	37	2	14774447	14774447	+	Missense_Mutation	SNP	C	T	T			TCGA-DE-A0Y2-01A-11D-A10S-08	TCGA-DE-A0Y2-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	b3423951-7bef-4dbe-be7c-c46c37ed2ffb	aef4af62-4d81-4cdb-9cd8-069dd8a3b6e7	g.chr2:14774447C>T	uc002rbz.1	+	2	586	c.344C>T	c.(343-345)GCG>GTG	p.A115V	FAM84A_uc002rca.1_5'Flank	NM_145175	NP_660158	Q96KN4	FA84A_HUMAN	family with sequence similarity 84, member A	115										pancreas(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.197)		GBM - Glioblastoma multiforme(1;0.00969)			GCGGTCACCGCGCTGCCAGCG	0.537000													5	14	---	---	---	---	0	0	0.184627	0	0
LMAN2L	81562	broad.mit.edu	37	2	97405604	97405604	+	Silent	SNP	C	T	T			TCGA-DE-A0Y2-01A-11D-A10S-08	TCGA-DE-A0Y2-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	b3423951-7bef-4dbe-be7c-c46c37ed2ffb	aef4af62-4d81-4cdb-9cd8-069dd8a3b6e7	g.chr2:97405604C>T	uc002swu.2	-	1	210	c.174G>A	c.(172-174)TCG>TCA	p.S58S	LMAN2L_uc002swv.2_Silent_p.S58S|LMAN2L_uc010yut.1_5'UTR|LMAN2L_uc010yuu.1_5'UTR|LMAN2L_uc010yuv.1_5'UTR|LMAN2L_uc010yuw.1_5'UTR|LMAN2L_uc002sww.2_5'UTR|LMAN2L_uc010yux.1_5'UTR	NM_030805	NP_110432	Q9H0V9	LMA2L_HUMAN	lectin, mannose-binding 2-like isoform 2	58	L-type lectin-like.|Lumenal (Potential).				ER to Golgi vesicle-mediated transport|protein folding|protein transport	endoplasmic reticulum membrane|ER to Golgi transport vesicle|Golgi membrane|integral to membrane	mannose binding|metal ion binding				0						GGTAGGGCTTCGACAGCGAGT	0.627000													33	51	---	---	---	---	0	0	0.788014	0	0
PI4KAP2	375133	broad.mit.edu	37	22	21829555	21829555	+	Missense_Mutation	SNP	T	G	G			TCGA-DE-A0Y2-01A-11D-A10S-08	TCGA-DE-A0Y2-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	b3423951-7bef-4dbe-be7c-c46c37ed2ffb	aef4af62-4d81-4cdb-9cd8-069dd8a3b6e7	g.chr22:21829555T>G	uc002zuv.3	-	14	3847	c.1588A>C	c.(1588-1590)ATC>CTC	p.I530L	PI4KAP2_uc002zuw.2_Intron|PI4KAP2_uc011aid.1_Intron					SubName: Full=Putative uncharacterized protein PI4KA;												0						TCCAACATGATAGTGACCAGG	0.607000													3	27	---	---	---	---	0	0	0.115264	0	0
DGKG	1608	broad.mit.edu	37	3	185929649	185929649	+	Nonsense_Mutation	SNP	C	A	A			TCGA-DE-A0Y2-01A-11D-A10S-08	TCGA-DE-A0Y2-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	b3423951-7bef-4dbe-be7c-c46c37ed2ffb	aef4af62-4d81-4cdb-9cd8-069dd8a3b6e7	g.chr3:185929649C>A	uc003fqa.2	-	21	2389	c.1852G>T	c.(1852-1854)GAA>TAA	p.E618*	DGKG_uc003fqb.2_Nonsense_Mutation_p.E579*|DGKG_uc003fqc.2_Nonsense_Mutation_p.E593*|DGKG_uc011brx.1_Nonsense_Mutation_p.E559*	NM_001346	NP_001337	P49619	DGKG_HUMAN	diacylglycerol kinase gamma isoform 1	618					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	cytoplasm|plasma membrane	ATP binding|calcium ion binding|diacylglycerol kinase activity			breast(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5	all_cancers(143;3.26e-12)|Ovarian(172;0.0315)|Breast(254;0.247)		OV - Ovarian serous cystadenocarcinoma(80;1.93e-20)	GBM - Glioblastoma multiforme(93;0.0657)	Phosphatidylserine(DB00144)	GTGCCAAATTCAAAGTACCAC	0.453000													4	100	---	---	---	---	0.00024832	0.000270895	0.150653	1	0
RIOK2	55781	broad.mit.edu	37	5	96498929	96498929	+	Missense_Mutation	SNP	C	T	T			TCGA-DE-A0Y2-01A-11D-A10S-08	TCGA-DE-A0Y2-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	b3423951-7bef-4dbe-be7c-c46c37ed2ffb	aef4af62-4d81-4cdb-9cd8-069dd8a3b6e7	g.chr5:96498929C>T	uc003kmz.2	-	10	1605	c.1495G>A	c.(1495-1497)GAA>AAA	p.E499K		NM_018343	NP_060813	Q9BVS4	RIOK2_HUMAN	RIO kinase 2 isoform 1	499	Protein kinase.						ATP binding|protein serine/threonine kinase activity			kidney(1)	1		all_cancers(142;0.000125)|all_epithelial(76;8.48e-07)|all_lung(232;0.0131)|Lung NSC(167;0.0161)|Colorectal(57;0.0676)|Ovarian(225;0.105)		COAD - Colon adenocarcinoma(37;0.0657)		TTCACCAGTTCCTGGAAAGAT	0.328000													39	49	---	---	---	---	0	0	0.812448	0	0
MOS	4342	broad.mit.edu	37	8	57026479	57026479	+	Silent	SNP	C	T	T			TCGA-DE-A0Y2-01A-11D-A10S-08	TCGA-DE-A0Y2-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	b3423951-7bef-4dbe-be7c-c46c37ed2ffb	aef4af62-4d81-4cdb-9cd8-069dd8a3b6e7	g.chr8:57026479C>T	uc011leb.1	-	1	63	c.63G>A	c.(61-63)GCG>GCA	p.A21A		NM_005372	NP_005363	P00540	MOS_HUMAN	v-mos Moloney murine sarcoma viral oncogene	21							ATP binding|protein binding|protein serine/threonine kinase activity			lung(2)|ovary(1)|central_nervous_system(1)	4			Epithelial(17;0.00117)|all cancers(17;0.00879)			TGCAGGGCCGCGCGTCCACCG	0.706000													23	36	---	---	---	---	0	0	0.624587	0	0
ZFAND5	7763	broad.mit.edu	37	9	74971943	74971943	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DE-A0Y2-01A-11D-A10S-08	TCGA-DE-A0Y2-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	b3423951-7bef-4dbe-be7c-c46c37ed2ffb	aef4af62-4d81-4cdb-9cd8-069dd8a3b6e7	g.chr9:74971943G>A	uc004aiv.2	-	5	675	c.397C>T	c.(397-399)CAG>TAG	p.Q133*	ZFAND5_uc010mox.1_Nonsense_Mutation_p.Q30*|ZFAND5_uc010moy.1_Nonsense_Mutation_p.Q133*|ZFAND5_uc004aix.2_Nonsense_Mutation_p.Q133*|ZFAND5_uc004aiw.2_Nonsense_Mutation_p.Q133*|ZFAND5_uc004aiy.2_Nonsense_Mutation_p.Q133*	NM_006007	NP_005998	O76080	ZFAN5_HUMAN	zinc finger, AN1-type domain 5	133							DNA binding|zinc ion binding				0						GTACTGGGCTGAGAAACTGAT	0.383000													35	51	---	---	---	---	0	0	0.788014	0	0
TDRD7	23424	broad.mit.edu	37	9	100245294	100245294	+	Missense_Mutation	SNP	C	T	T			TCGA-DE-A0Y2-01A-11D-A10S-08	TCGA-DE-A0Y2-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	b3423951-7bef-4dbe-be7c-c46c37ed2ffb	aef4af62-4d81-4cdb-9cd8-069dd8a3b6e7	g.chr9:100245294C>T	uc004axj.2	+	15	2801	c.2576C>T	c.(2575-2577)TCT>TTT	p.S859F	TDRD7_uc011lux.1_Missense_Mutation_p.S785F|TDRD7_uc010msp.1_Missense_Mutation_p.S111F|TDRD7_uc011luy.1_Missense_Mutation_p.S179F	NM_014290	NP_055105	Q8NHU6	TDRD7_HUMAN	tudor domain containing 7	859					lens fiber cell differentiation|lens morphogenesis in camera-type eye|posttranscriptional regulation of gene expression|spermatogenesis	chromatoid body	mRNA binding			ovary(2)|pancreas(1)	3		Acute lymphoblastic leukemia(62;0.158)				GGAGCTGACTCTCCCAACAGC	0.463000													40	51	---	---	---	---	0	0	0.819951	0	0
SARDH	1757	broad.mit.edu	37	9	136529067	136529067	+	Missense_Mutation	SNP	C	T	T			TCGA-DE-A0Y2-01A-11D-A10S-08	TCGA-DE-A0Y2-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	b3423951-7bef-4dbe-be7c-c46c37ed2ffb	aef4af62-4d81-4cdb-9cd8-069dd8a3b6e7	g.chr9:136529067C>T	uc004cep.3	-	21	2835	c.2701G>A	c.(2701-2703)GCT>ACT	p.A901T	SARDH_uc004ceo.2_Missense_Mutation_p.A901T|SARDH_uc011mdn.1_Missense_Mutation_p.A901T|SARDH_uc011mdo.1_Missense_Mutation_p.A733T|SARDH_uc004cen.2_Missense_Mutation_p.A351T	NM_001134707	NP_001128179	Q9UL12	SARDH_HUMAN	sarcosine dehydrogenase precursor	901					glycine catabolic process	mitochondrial matrix	aminomethyltransferase activity|sarcosine dehydrogenase activity				0				OV - Ovarian serous cystadenocarcinoma(145;3.21e-07)|Epithelial(140;2.37e-06)|all cancers(34;2.75e-05)		TTCAGGTGAGCCTGGGCACCA	0.577000													7	140	---	---	---	---	0	0	0.278610	0	0
Unknown	0	broad.mit.edu	37	1	116005817	116005832	+	IGR	DEL	AGGAAGGAAGGAAGGA	-	-	rs34578935	by1000genomes	TCGA-DE-A0Y2-01A-11D-A10S-08	TCGA-DE-A0Y2-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	b3423951-7bef-4dbe-be7c-c46c37ed2ffb	aef4af62-4d81-4cdb-9cd8-069dd8a3b6e7	g.chr1:116005817_116005832delAGGAAGGAAGGAAGGA								NGF (124960 upstream) : VANGL1 (178742 downstream)																							agagggagggaggaaggaaggaaggaaggaaggaag	0.083													4	7	---	---	---	---					
Unknown	0	broad.mit.edu	37	12	110072831	110072833	+	IGR	DEL	CAC	-	-			TCGA-DE-A0Y2-01A-11D-A10S-08	TCGA-DE-A0Y2-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	b3423951-7bef-4dbe-be7c-c46c37ed2ffb	aef4af62-4d81-4cdb-9cd8-069dd8a3b6e7	g.chr12:110072831_110072833delCAC								MVK (37761 upstream) : C12orf34 (79357 downstream)																							ccaccaccatcaccaccaccacc	0.000													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	15	20454213	20454214	+	IGR	INS	-	T	T	rs144687403		TCGA-DE-A0Y2-01A-11D-A10S-08	TCGA-DE-A0Y2-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	b3423951-7bef-4dbe-be7c-c46c37ed2ffb	aef4af62-4d81-4cdb-9cd8-069dd8a3b6e7	g.chr15:20454213_20454214insT								None (None upstream) : GOLGA6L6 (282880 downstream)																							GACCCTCAAGCtttttttttct	0.267													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	43675430	43675431	+	IGR	INS	-	A	A	rs1724389		TCGA-DE-A0Y2-01A-11D-A10S-08	TCGA-DE-A0Y2-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	b3423951-7bef-4dbe-be7c-c46c37ed2ffb	aef4af62-4d81-4cdb-9cd8-069dd8a3b6e7	g.chr17:43675430_43675431insA								LRRC37A4 (79914 upstream) : LOC644172 (2060 downstream)																							TACACTGTTTTTTTTTTTTTTT	0.277													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	52154385	52154404	+	IGR	DEL	GGAGGGGAGGGGAGGGGAGT	-	-	rs71159227	by1000genomes	TCGA-DE-A0Y2-01A-11D-A10S-08	TCGA-DE-A0Y2-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	b3423951-7bef-4dbe-be7c-c46c37ed2ffb	aef4af62-4d81-4cdb-9cd8-069dd8a3b6e7	g.chr17:52154385_52154404delGGAGGGGAGGGGAGGGGAGT								KIF2B (251812 upstream) : TOM1L1 (823648 downstream)																							ggaggggaggggaggggaggggaggggagtgagagagaga	0.000													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	20262849	20262850	+	IGR	INS	-	T	T	rs71340318		TCGA-DE-A0Y2-01A-11D-A10S-08	TCGA-DE-A0Y2-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	b3423951-7bef-4dbe-be7c-c46c37ed2ffb	aef4af62-4d81-4cdb-9cd8-069dd8a3b6e7	g.chr19:20262849_20262850insT								ZNF90 (24964 upstream) : ZNF486 (15233 downstream)																							TTTCttttttcttttttttttt	0.262													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	3	111800117	111800117	+	IGR	DEL	A	-	-			TCGA-DE-A0Y2-01A-11D-A10S-08	TCGA-DE-A0Y2-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	b3423951-7bef-4dbe-be7c-c46c37ed2ffb	aef4af62-4d81-4cdb-9cd8-069dd8a3b6e7	g.chr3:111800117delA								TMPRSS7 (1 upstream) : C3orf52 (5065 downstream)																							gtctctactgaaaaaaaaaaa	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	3	168269865	168269865	+	IGR	DEL	A	-	-	rs139746804		TCGA-DE-A0Y2-01A-11D-A10S-08	TCGA-DE-A0Y2-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	b3423951-7bef-4dbe-be7c-c46c37ed2ffb	aef4af62-4d81-4cdb-9cd8-069dd8a3b6e7	g.chr3:168269865delA								MIR551B (128 upstream) : C3orf50 (257719 downstream)																							CAATGGGATTAAAAAAAAAAA	0.279													3	3	---	---	---	---					
MIR1269	100302177	broad.mit.edu	37	4	67142230	67142231	+	5'Flank	INS	-	TAGA	TAGA	rs143986407	by1000genomes	TCGA-DE-A0Y2-01A-11D-A10S-08	TCGA-DE-A0Y2-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	b3423951-7bef-4dbe-be7c-c46c37ed2ffb	aef4af62-4d81-4cdb-9cd8-069dd8a3b6e7	g.chr4:67142230_67142231insTAGA	hsa-mir-1269|MI0006406	+																							0						taaggaatacttagctggaaaa	0.054													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	84424108	84424108	+	IGR	DEL	A	-	-			TCGA-DE-A0Y2-01A-11D-A10S-08	TCGA-DE-A0Y2-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	b3423951-7bef-4dbe-be7c-c46c37ed2ffb	aef4af62-4d81-4cdb-9cd8-069dd8a3b6e7	g.chr4:84424108delA								FAM175A (17818 upstream) : AGPAT9 (33153 downstream)																							CAGGTTGGGGAAAATACTGCA	0.403													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	15125363	15125374	+	IGR	DEL	AAGGAAGGAAGG	-	-	rs72365415	by1000genomes	TCGA-DE-A0Y2-01A-11D-A10S-08	TCGA-DE-A0Y2-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	b3423951-7bef-4dbe-be7c-c46c37ed2ffb	aef4af62-4d81-4cdb-9cd8-069dd8a3b6e7	g.chr6:15125363_15125374delAAGGAAGGAAGG								CD83 (988217 upstream) : JARID2 (120360 downstream)																							aaaagaaagaaaggaaggaaggaaggaaggaa	0.000													2	4	---	---	---	---					
THEMIS	387357	broad.mit.edu	37	6	128134235	128134238	+	Frame_Shift_Del	DEL	ACTA	-	-	rs150659844		TCGA-DE-A0Y2-01A-11D-A10S-08	TCGA-DE-A0Y2-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	b3423951-7bef-4dbe-be7c-c46c37ed2ffb	aef4af62-4d81-4cdb-9cd8-069dd8a3b6e7	g.chr6:128134235_128134238delACTA	uc003qbi.2	-	5	1867_1870	c.1548_1551delTAGT	c.(1546-1551)GTTAGTfs	p.V516fs	THEMIS_uc010kfa.2_Frame_Shift_Del_p.V419fs|THEMIS_uc011ebt.1_Frame_Shift_Del_p.V516fs|THEMIS_uc010kfb.2_Frame_Shift_Del_p.V481fs	NM_001010923	NP_001010923	Q8N1K5	THMS1_HUMAN	thymocyte selection pathway associated isoform	516_517	CABIT 2.				negative T cell selection|positive T cell selection|T cell receptor signaling pathway	cytoplasm|nucleus				ovary(2)|skin(2)	4						TAGAGAAATTACTAACTAACTGAA	0.441													50	76	---	---	---	---					
Unknown	0	broad.mit.edu	37	8	96977957	96977964	+	IGR	DEL	AGGGAAGG	-	-	rs67336860		TCGA-DE-A0Y2-01A-11D-A10S-08	TCGA-DE-A0Y2-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	b3423951-7bef-4dbe-be7c-c46c37ed2ffb	aef4af62-4d81-4cdb-9cd8-069dd8a3b6e7	g.chr8:96977957_96977964delAGGGAAGG								C8orf37 (696520 upstream) : GDF6 (176596 downstream)																							gaaggaaggaagggaaggaaggaaggaa	0.125													4	4	---	---	---	---					
PLEC	5339	broad.mit.edu	37	8	145009091	145009091	+	Frame_Shift_Del	DEL	G	-	-	rs137853160		TCGA-DE-A0Y2-01A-11D-A10S-08	TCGA-DE-A0Y2-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	b3423951-7bef-4dbe-be7c-c46c37ed2ffb	aef4af62-4d81-4cdb-9cd8-069dd8a3b6e7	g.chr8:145009091delG	uc003zaf.1	-	9	1413	c.1243delC	c.(1243-1245)CAGfs	p.Q415fs	PLEC_uc003zab.1_Frame_Shift_Del_p.Q278fs|PLEC_uc003zac.1_Frame_Shift_Del_p.Q282fs|PLEC_uc003zad.2_Frame_Shift_Del_p.Q278fs|PLEC_uc003zae.1_Frame_Shift_Del_p.Q246fs|PLEC_uc003zag.1_Frame_Shift_Del_p.Q256fs|PLEC_uc003zah.2_Frame_Shift_Del_p.Q264fs|PLEC_uc003zaj.2_Frame_Shift_Del_p.Q305fs	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin isoform 1	415	Globular 1.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|hemidesmosome|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	9						CAGCGCAGCTGCAGCTCCTGC	0.706													19	31	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	131208284	131208285	+	IGR	DEL	AA	-	-	rs143368600		TCGA-DE-A0Y2-01A-11D-A10S-08	TCGA-DE-A0Y2-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	b3423951-7bef-4dbe-be7c-c46c37ed2ffb	aef4af62-4d81-4cdb-9cd8-069dd8a3b6e7	g.chr9:131208284_131208285delAA								CERCAM (8657 upstream) : ODF2 (9181 downstream)																							AGTTTGAGACAAGAGGAGAAAA	0.223													8	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	136184772	136184774	+	IGR	DEL	CTG	-	-	rs72449624		TCGA-DE-A0Y2-01A-11D-A10S-08	TCGA-DE-A0Y2-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	b3423951-7bef-4dbe-be7c-c46c37ed2ffb	aef4af62-4d81-4cdb-9cd8-069dd8a3b6e7	g.chr9:136184772_136184774delCTG								ABO (34142 upstream) : SURF6 (12779 downstream)																							GAGGCTGAGACTGCTGGATGAAG	0.621													5	4	---	---	---	---					
