Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
NRAS	4893	broad.mit.edu	37	1	115256529	115256529	+	Missense_Mutation	SNP	T	C	C	rs11554290		TCGA-DJ-A13S-01A-11D-A10S-08	TCGA-DJ-A13S-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b564c58-40b0-4d9b-a372-12249a31a765	22668d43-8a18-4cd4-ad8e-ec4e37ce4a38	g.chr1:115256529T>C	uc009wgu.2	-	3	436	c.182A>G	c.(181-183)CAA>CGA	p.Q61R		NM_002524	NP_002515	P01111	RASN_HUMAN	neuroblastoma RAS viral (v-ras) oncogene homolog	61	GTP.		Q -> K (in neuroblastoma cell).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	Golgi membrane|plasma membrane	GTP binding|GTPase activity	p.Q61R(757)|p.Q61K(537)|p.Q61L(147)|p.Q61H(95)|p.Q61P(21)|p.Q61E(9)|p.Q61?(4)|p.Q61Q(3)|p.Q61_E62>HK(1)		haematopoietic_and_lymphoid_tissue(1008)|skin(956)|thyroid(334)|large_intestine(62)|NS(60)|soft_tissue(32)|lung(31)|upper_aerodigestive_tract(25)|urinary_tract(12)|liver(10)|adrenal_gland(9)|autonomic_ganglia(8)|testis(8)|central_nervous_system(8)|prostate(8)|breast(7)|biliary_tract(6)|ovary(6)|stomach(5)|pancreas(5)|endometrium(2)|kidney(2)|cervix(2)|eye(1)	2607	all_epithelial(7;5.11e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		GTACTCTTCTTGTCCAGCTGT	0.458	Q61L(HEPG2_LIVER)|Q61R(SKMEL2_SKIN)|Q61R(KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(IPC298_SKIN)|Q61P(TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(MHHES1_BONE)|Q61R(HT1197_URINARY_TRACT)|Q61L(MELJUSO_SKIN)|Q61R(ONS76_CENTRAL_NERVOUS_SYSTEM)|Q61R(KU1919_URINARY_TRACT)|Q61L(C3A_LIVER)|Q61R(TT2609C02_THYROID)|Q61R(NCIH2347_LUNG)|Q61L(KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61R(SW1271_LUNG)|Q61L(HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)	50	Mis		melanoma|MM|AML|thyroid				Noonan_syndrome	TSP Lung(23;0.16)|Multiple Myeloma(1;<1E-6)			124	186	---	---	---	---	0	0	0.870114	0	0
OR2M3	127062	broad.mit.edu	37	1	248366857	248366857	+	Missense_Mutation	SNP	C	A	A			TCGA-DJ-A13S-01A-11D-A10S-08	TCGA-DJ-A13S-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b564c58-40b0-4d9b-a372-12249a31a765	22668d43-8a18-4cd4-ad8e-ec4e37ce4a38	g.chr1:248366857C>A	uc010pzg.1	+	1	488	c.488C>A	c.(487-489)ACA>AAA	p.T163K		NM_001004689	NP_001004689	Q8NG83	OR2M3_HUMAN	olfactory receptor, family 2, subfamily M,	163	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			GTTGTAGCAACATTTTCCTTC	0.438													135	247	---	---	---	---	1.591e-50	2.03295e-50	0.870114	1	0
NAV3	89795	broad.mit.edu	37	12	78401006	78401006	+	Missense_Mutation	SNP	A	C	C			TCGA-DJ-A13S-01A-11D-A10S-08	TCGA-DJ-A13S-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b564c58-40b0-4d9b-a372-12249a31a765	22668d43-8a18-4cd4-ad8e-ec4e37ce4a38	g.chr12:78401006A>C	uc001syp.2	+	8	1861	c.1688A>C	c.(1687-1689)CAG>CCG	p.Q563P	NAV3_uc001syo.2_Missense_Mutation_p.Q563P	NM_014903	NP_055718	Q8IVL0	NAV3_HUMAN	neuron navigator 3	563						nuclear outer membrane	ATP binding|nucleoside-triphosphatase activity			large_intestine(6)|ovary(5)|lung(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	17						AGCCCTTCCCAGTCCTTATCT	0.498										HNSCC(70;0.22)			53	88	---	---	---	---	0	0	0.870114	0	0
KLHDC2	23588	broad.mit.edu	37	14	50241313	50241313	+	Missense_Mutation	SNP	T	C	C			TCGA-DJ-A13S-01A-11D-A10S-08	TCGA-DJ-A13S-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b564c58-40b0-4d9b-a372-12249a31a765	22668d43-8a18-4cd4-ad8e-ec4e37ce4a38	g.chr14:50241313T>C	uc001wwx.2	+	3	668	c.268T>C	c.(268-270)TCT>CCT	p.S90P	SDCCAG1_uc010anj.1_Intron|KLHDC2_uc001wwy.2_Missense_Mutation_p.S90P|KLHDC2_uc010anp.2_Missense_Mutation_p.S90P	NM_014315	NP_055130	Q9Y2U9	KLDC2_HUMAN	kelch domain containing 2	90						nucleus	protein binding			ovary(1)	1	all_epithelial(31;0.000959)|Breast(41;0.0117)					TGTTCCTCCTTCTATGTCAGG	0.383													20	283	---	---	---	---	0	0	0.624587	0	0
LOC645752	645752	broad.mit.edu	37	15	78207601	78207601	+	Silent	SNP	G	A	A	rs28451071	by1000genomes	TCGA-DJ-A13S-01A-11D-A10S-08	TCGA-DJ-A13S-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b564c58-40b0-4d9b-a372-12249a31a765	22668d43-8a18-4cd4-ad8e-ec4e37ce4a38	g.chr15:78207601G>A	uc010bky.2	-	18	2075	c.1311C>T	c.(1309-1311)GCC>GCT	p.A437A	LOC645752_uc010umq.1_Silent_p.A84A|uc002bcw.1_5'Flank|uc002bcx.1_5'Flank	NR_027024				SubName: Full=GOLGA6 protein; Flags: Fragment;												0						AACCCTCCCTGGCCGCTCCTG	0.592													3	30	---	---	---	---	0	0	0.115264	0	0
MUC16	94025	broad.mit.edu	37	19	9069489	9069489	+	Missense_Mutation	SNP	G	T	T			TCGA-DJ-A13S-01A-11D-A10S-08	TCGA-DJ-A13S-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b564c58-40b0-4d9b-a372-12249a31a765	22668d43-8a18-4cd4-ad8e-ec4e37ce4a38	g.chr19:9069489G>T	uc002mkp.2	-	3	18161	c.17957C>A	c.(17956-17958)GCA>GAA	p.A5986E		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5988	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GAAGCTACTTGCACTTGGTAA	0.483													100	175	---	---	---	---	3.07327e-39	3.72028e-39	0.870114	1	0
SH2D6	284948	broad.mit.edu	37	2	85663607	85663607	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A13S-01A-11D-A10S-08	TCGA-DJ-A13S-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b564c58-40b0-4d9b-a372-12249a31a765	22668d43-8a18-4cd4-ad8e-ec4e37ce4a38	g.chr2:85663607G>A	uc002spq.2	+	4	591	c.430G>A	c.(430-432)GCC>ACC	p.A144T	SH2D6_uc002spo.2_RNA|SH2D6_uc002spp.2_RNA	NM_198482	NP_940884	Q7Z4S9	SH2D6_HUMAN	SH2 domain containing 6	144	SH2.									central_nervous_system(1)	1						CTCCGTGGCGGCCATGGTCCA	0.632													4	70	---	---	---	---	0	0	0.150653	0	0
XIRP2	129446	broad.mit.edu	37	2	168105213	168105213	+	Silent	SNP	G	A	A			TCGA-DJ-A13S-01A-11D-A10S-08	TCGA-DJ-A13S-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b564c58-40b0-4d9b-a372-12249a31a765	22668d43-8a18-4cd4-ad8e-ec4e37ce4a38	g.chr2:168105213G>A	uc002udx.2	+	8	7329	c.7311G>A	c.(7309-7311)AAG>AAA	p.K2437K	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Silent_p.K2262K|XIRP2_uc010fpq.2_Silent_p.K2215K|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	2262					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						AAGATAATAAGAACGATTTTT	0.403													47	94	---	---	---	---	0	0	0.870114	0	0
EPB41L1	2036	broad.mit.edu	37	20	34809819	34809819	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A13S-01A-11D-A10S-08	TCGA-DJ-A13S-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b564c58-40b0-4d9b-a372-12249a31a765	22668d43-8a18-4cd4-ad8e-ec4e37ce4a38	g.chr20:34809819G>A	uc002xfb.2	+	20	2644	c.2473G>A	c.(2473-2475)GAG>AAG	p.E825K	EPB41L1_uc002xeu.2_Missense_Mutation_p.E723K|EPB41L1_uc002xev.2_Missense_Mutation_p.E824K|EPB41L1_uc002xew.2_Missense_Mutation_p.E716K|EPB41L1_uc002xex.2_Missense_Mutation_p.E645K|EPB41L1_uc002xey.2_Missense_Mutation_p.E575K|EPB41L1_uc002xez.2_Missense_Mutation_p.E723K|EPB41L1_uc010gfq.2_Missense_Mutation_p.E923K	NM_012156	NP_036288	Q9H4G0	E41L1_HUMAN	erythrocyte membrane protein band 4.1-like 1	825	Carboxyl-terminal (CTD).				cortical actin cytoskeleton organization|synaptic transmission	cytoskeleton|cytosol|extrinsic to membrane|plasma membrane	actin binding|structural molecule activity			ovary(2)|pancreas(1)	3	Breast(12;0.0239)					GACAAGGATCGAGAAGCGAAT	0.552													27	51	---	---	---	---	0	0	0.717897	0	0
BOC	91653	broad.mit.edu	37	3	112993298	112993298	+	Missense_Mutation	SNP	C	A	A			TCGA-DJ-A13S-01A-11D-A10S-08	TCGA-DJ-A13S-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b564c58-40b0-4d9b-a372-12249a31a765	22668d43-8a18-4cd4-ad8e-ec4e37ce4a38	g.chr3:112993298C>A	uc003dzx.2	+	9	1932	c.1311C>A	c.(1309-1311)AAC>AAA	p.N437K	BOC_uc003dzy.2_Missense_Mutation_p.N437K|BOC_uc003dzz.2_Missense_Mutation_p.N437K|BOC_uc003eab.2_Missense_Mutation_p.N138K	NM_033254	NP_150279	Q9BWV1	BOC_HUMAN	brother of CDO precursor	437	Extracellular (Potential).				cell adhesion|muscle cell differentiation|positive regulation of myoblast differentiation	integral to membrane|plasma membrane	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|pancreas(1)	6			Epithelial(53;0.227)			AACTCGGCAACCCTGAGCAGA	0.632													14	135	---	---	---	---	2.61681e-11	2.86604e-11	0.457914	1	0
PTPN13	5783	broad.mit.edu	37	4	87662917	87662917	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A13S-01A-11D-A10S-08	TCGA-DJ-A13S-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b564c58-40b0-4d9b-a372-12249a31a765	22668d43-8a18-4cd4-ad8e-ec4e37ce4a38	g.chr4:87662917G>A	uc003hpz.2	+	16	2915	c.2435G>A	c.(2434-2436)CGC>CAC	p.R812H	PTPN13_uc003hpy.2_Missense_Mutation_p.R812H|PTPN13_uc003hqa.2_Missense_Mutation_p.R812H|PTPN13_uc003hqb.2_Missense_Mutation_p.R812H	NM_080683	NP_542414	Q12923	PTN13_HUMAN	protein tyrosine phosphatase, non-receptor type	812	FERM.					cytoplasm|cytoskeleton|plasma membrane	protein binding|protein binding|protein tyrosine phosphatase activity			ovary(4)|breast(1)|kidney(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.242)		OV - Ovarian serous cystadenocarcinoma(123;0.00082)		AATGGAGTGCGCACATTGGTC	0.388													3	36	---	---	---	---	0	0	0.115264	0	0
RAB3C	115827	broad.mit.edu	37	5	58120914	58120914	+	Missense_Mutation	SNP	G	T	T			TCGA-DJ-A13S-01A-11D-A10S-08	TCGA-DJ-A13S-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b564c58-40b0-4d9b-a372-12249a31a765	22668d43-8a18-4cd4-ad8e-ec4e37ce4a38	g.chr5:58120914G>T	uc003jrp.2	+	4	518	c.421G>T	c.(421-423)GTT>TTT	p.V141F		NM_138453	NP_612462	Q96E17	RAB3C_HUMAN	RAB3C, member RAS oncogene family	141					protein transport|small GTPase mediated signal transduction	plasma membrane	GTP binding			ovary(1)|central_nervous_system(1)	2		all_cancers(5;9.93e-10)|all_epithelial(5;1.49e-10)|all_lung(5;8.97e-05)|Lung NSC(5;0.000139)|Prostate(74;0.0664)		OV - Ovarian serous cystadenocarcinoma(10;1.8e-34)		AGTTATTCTGGTTGGGAACAA	0.398													37	65	---	---	---	---	3.21399e-22	3.69609e-22	0.804634	1	0
MATR3	9782	broad.mit.edu	37	5	138643173	138643173	+	Silent	SNP	G	A	A			TCGA-DJ-A13S-01A-11D-A10S-08	TCGA-DJ-A13S-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b564c58-40b0-4d9b-a372-12249a31a765	22668d43-8a18-4cd4-ad8e-ec4e37ce4a38	g.chr5:138643173G>A	uc003ldu.2	+	5	496	c.69G>A	c.(67-69)GCG>GCA	p.A23A	MATR3_uc003lds.2_Silent_p.A23A|MATR3_uc010jfb.2_Silent_p.A23A|MATR3_uc003ldt.2_Intron|MATR3_uc003ldw.2_Silent_p.A23A|MATR3_uc003ldx.2_Silent_p.A23A|MATR3_uc010jfc.2_Silent_p.A23A|MATR3_uc003ldy.2_Intron|MATR3_uc011czb.1_Intron|MATR3_uc003ldz.2_Silent_p.A23A|MATR3_uc003lea.2_Silent_p.A23A	NM_199189	NP_954659	P43243	MATR3_HUMAN	matrin 3	23						nuclear inner membrane|nuclear matrix	nucleotide binding|protein binding|RNA binding|structural molecule activity|zinc ion binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00325)			ACCTGTCTGCGGCAGGAATAG	0.473													64	151	---	---	---	---	0	0	0.870114	0	0
CDKL5	6792	broad.mit.edu	37	X	18664181	18664181	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A13S-01A-11D-A10S-08	TCGA-DJ-A13S-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b564c58-40b0-4d9b-a372-12249a31a765	22668d43-8a18-4cd4-ad8e-ec4e37ce4a38	g.chrX:18664181G>A	uc004cym.2	+	19	3021	c.2768G>A	c.(2767-2769)CGC>CAC	p.R923H	CDKL5_uc004cyn.2_Missense_Mutation_p.R923H|RS1_uc004cyo.2_Intron	NM_003159	NP_003150	O76039	CDKL5_HUMAN	cyclin-dependent kinase-like 5	923			R -> C.		neuron migration|positive regulation of axon extension|positive regulation of dendrite morphogenesis|positive regulation of Rac GTPase activity|protein autophosphorylation	dendrite cytoplasm|dendritic growth cone|nucleus	ATP binding|cyclin-dependent protein kinase activity|Rac GTPase binding			ovary(2)|large_intestine(1)|stomach(1)|central_nervous_system(1)|skin(1)	6	Hepatocellular(33;0.183)					caagatagacgcttcatgtta	0													20	77	---	---	---	---	0	0	0.592651	0	0
GPR123	84435	broad.mit.edu	37	10	134900634	134900634	+	5'Flank	DEL	T	-	-			TCGA-DJ-A13S-01A-11D-A10S-08	TCGA-DJ-A13S-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b564c58-40b0-4d9b-a372-12249a31a765	22668d43-8a18-4cd4-ad8e-ec4e37ce4a38	g.chr10:134900634delT	uc001llx.3	+						GPR123_uc001llw.2_Intron	NM_001083909	NP_001077378	Q86SQ6	GP123_HUMAN	G protein-coupled receptor 123							integral to membrane|plasma membrane	G-protein coupled receptor activity				0		all_cancers(35;1.8e-10)|all_epithelial(44;8.95e-09)|Lung NSC(174;0.000845)|all_lung(145;0.00144)|all_neural(114;0.0299)|Colorectal(31;0.0585)|Melanoma(40;0.123)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;9.16e-06)|Epithelial(32;1.21e-05)|all cancers(32;1.63e-05)		GGTGGAGGGGTGTGGGGTCAC	0.657													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	11	19296063	19296064	+	IGR	DEL	AA	-	-	rs35433045		TCGA-DJ-A13S-01A-11D-A10S-08	TCGA-DJ-A13S-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b564c58-40b0-4d9b-a372-12249a31a765	22668d43-8a18-4cd4-ad8e-ec4e37ce4a38	g.chr11:19296063_19296064delAA								E2F8 (32896 upstream) : NAV2 (76207 downstream)																							actctgtttcaaaaaaaaaaaa	0.183													2	4	---	---	---	---					
SLC5A11	115584	broad.mit.edu	37	16	24921737	24921739	+	In_Frame_Del	DEL	CAG	-	-			TCGA-DJ-A13S-01A-11D-A10S-08	TCGA-DJ-A13S-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b564c58-40b0-4d9b-a372-12249a31a765	22668d43-8a18-4cd4-ad8e-ec4e37ce4a38	g.chr16:24921737_24921739delCAG	uc002dmu.2	+	15	1993_1995	c.1761_1763delCAG	c.(1759-1764)GCCAGC>GCC	p.S592del	SLC5A11_uc002dms.2_In_Frame_Del_p.S528del|SLC5A11_uc010vcd.1_In_Frame_Del_p.S557del|SLC5A11_uc002dmt.2_In_Frame_Del_p.S436del|SLC5A11_uc010vce.1_In_Frame_Del_p.S522del|SLC5A11_uc010bxt.2_In_Frame_Del_p.S528del|SLC5A11_uc002dmv.2_In_Frame_Del_p.S215del	NM_052944	NP_443176	Q8WWX8	SC5AB_HUMAN	solute carrier family 5 (sodium/glucose	592	Cytoplasmic (Potential).				apoptosis|carbohydrate transport|sodium ion transport	integral to membrane|plasma membrane	polyol transmembrane transporter activity|symporter activity			ovary(2)	2				GBM - Glioblastoma multiforme(48;0.0365)		TGCCAGAGGCCAGCAGCAGCAGC	0.542													7	142	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	13709373	13709374	+	IGR	INS	-	AAAA	AAAA	rs139694712	by1000genomes	TCGA-DJ-A13S-01A-11D-A10S-08	TCGA-DJ-A13S-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b564c58-40b0-4d9b-a372-12249a31a765	22668d43-8a18-4cd4-ad8e-ec4e37ce4a38	g.chr19:13709373_13709374insAAAA								CACNA1A (92099 upstream) : CCDC130 (133200 downstream)																							taaaaggaaatgaaagaaaaga	0.000											OREG0025297	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	23079421	23079422	+	IGR	INS	-	TCCC	TCCC			TCGA-DJ-A13S-01A-11D-A10S-08	TCGA-DJ-A13S-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b564c58-40b0-4d9b-a372-12249a31a765	22668d43-8a18-4cd4-ad8e-ec4e37ce4a38	g.chr19:23079421_23079422insTCCC								ZNF99 (126637 upstream) : ZNF91 (441997 downstream)																							ccctccctccctccttctttcc	0.064													2	4	---	---	---	---					
FAM187B	148109	broad.mit.edu	37	19	35719750	35719750	+	5'Flank	DEL	T	-	-			TCGA-DJ-A13S-01A-11D-A10S-08	TCGA-DJ-A13S-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b564c58-40b0-4d9b-a372-12249a31a765	22668d43-8a18-4cd4-ad8e-ec4e37ce4a38	g.chr19:35719750delT	uc002nyk.1	-							NM_152481	NP_689694	Q17R55	F187B_HUMAN	family with sequence similarity 187, member B							integral to membrane				ovary(2)	2						ACTGtttttcttttttttttt	0.249													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	21	37958207	37958218	+	IGR	DEL	CCTTCCTTCCTC	-	-	rs148186753	by1000genomes	TCGA-DJ-A13S-01A-11D-A10S-08	TCGA-DJ-A13S-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b564c58-40b0-4d9b-a372-12249a31a765	22668d43-8a18-4cd4-ad8e-ec4e37ce4a38	g.chr21:37958207_37958218delCCTTCCTTCCTC								CLDN14 (9340 upstream) : SIM2 (113773 downstream)																							ttccttccttccttccttcctccctccctCTC	0.146													8	3	---	---	---	---					
PWP2	5822	broad.mit.edu	37	21	45540253	45540253	+	Frame_Shift_Del	DEL	G	-	-			TCGA-DJ-A13S-01A-11D-A10S-08	TCGA-DJ-A13S-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b564c58-40b0-4d9b-a372-12249a31a765	22668d43-8a18-4cd4-ad8e-ec4e37ce4a38	g.chr21:45540253delG	uc002zeb.2	+	11	1303	c.1213delG	c.(1213-1215)GGCfs	p.G405fs		NM_005049	NP_005040	Q15269	PWP2_HUMAN	PWP2 periodic tryptophan protein homolog	405	WD 8.					cytoplasm|nucleolus	signal transducer activity			pancreas(1)	1				STAD - Stomach adenocarcinoma(101;0.172)|Colorectal(79;0.2)		CACCCTCAGCGGCTTCTGCTT	0.632													51	120	---	---	---	---					
Unknown	0	broad.mit.edu	37	22	16414229	16414229	+	IGR	DEL	C	-	-			TCGA-DJ-A13S-01A-11D-A10S-08	TCGA-DJ-A13S-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b564c58-40b0-4d9b-a372-12249a31a765	22668d43-8a18-4cd4-ad8e-ec4e37ce4a38	g.chr22:16414229delC								POTEH (126292 upstream) : OR11H1 (34597 downstream)																							GCCATGCCAACTCAGCAGTCC	0.498													8	106	---	---	---	---					
RFPL3	10738	broad.mit.edu	37	22	32752978	32752979	+	5'Flank	INS	-	G	G			TCGA-DJ-A13S-01A-11D-A10S-08	TCGA-DJ-A13S-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b564c58-40b0-4d9b-a372-12249a31a765	22668d43-8a18-4cd4-ad8e-ec4e37ce4a38	g.chr22:32752978_32752979insG	uc003amj.2	+						RFPL3_uc010gwn.2_Intron	NM_001098535	NP_001092005	O75679	RFPL3_HUMAN	ret finger protein-like 3 isoform 1								zinc ion binding			ovary(1)	1						GGCTGGCCTGTGGGTGGGCGAG	0.624													8	17	---	---	---	---					
Unknown	0	broad.mit.edu	37	5	44716763	44716765	+	IGR	DEL	CAA	-	-	rs144322268	by1000genomes	TCGA-DJ-A13S-01A-11D-A10S-08	TCGA-DJ-A13S-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b564c58-40b0-4d9b-a372-12249a31a765	22668d43-8a18-4cd4-ad8e-ec4e37ce4a38	g.chr5:44716763_44716765delCAA								FGF10 (327979 upstream) : MRPS30 (92262 downstream)																							aggaaggaagcaagaaggaagga	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	131779149	131779150	+	IGR	DEL	TG	-	-	rs72514545		TCGA-DJ-A13S-01A-11D-A10S-08	TCGA-DJ-A13S-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b564c58-40b0-4d9b-a372-12249a31a765	22668d43-8a18-4cd4-ad8e-ec4e37ce4a38	g.chr6:131779149_131779150delTG								AKAP7 (174476 upstream) : ARG1 (115215 downstream)																							CACATAAGCCtgtgtgtgtgtg	0.050													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	134723987	134723998	+	IGR	DEL	TCCTTCCCTCCC	-	-	rs148190110	by1000genomes	TCGA-DJ-A13S-01A-11D-A10S-08	TCGA-DJ-A13S-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b564c58-40b0-4d9b-a372-12249a31a765	22668d43-8a18-4cd4-ad8e-ec4e37ce4a38	g.chr6:134723987_134723998delTCCTTCCCTCCC								SGK1 (84791 upstream) : ALDH8A1 (514531 downstream)																							cttccttccttccttccctccctccctccctc	0.000													9	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	67206114	67206117	+	IGR	DEL	TTCT	-	-	rs56895053		TCGA-DJ-A13S-01A-11D-A10S-08	TCGA-DJ-A13S-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b564c58-40b0-4d9b-a372-12249a31a765	22668d43-8a18-4cd4-ad8e-ec4e37ce4a38	g.chr7:67206114_67206117delTTCT								STAG3L4 (419602 upstream) : None (None downstream)																							ccttccttccttctttccttcctt	0.113													6	11	---	---	---	---					
SSPO	23145	broad.mit.edu	37	7	149515189	149515189	+	Splice_Site	DEL	A	-	-	rs112122477		TCGA-DJ-A13S-01A-11D-A10S-08	TCGA-DJ-A13S-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b564c58-40b0-4d9b-a372-12249a31a765	22668d43-8a18-4cd4-ad8e-ec4e37ce4a38	g.chr7:149515189delA	uc010lpk.2	+	81	11577	c.11577_splice	c.e81+2	p.E3859_splice		NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor						cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			GACCTCGAGTAACTGCCCCAG	0.562													12	8	---	---	---	---					
TG	7038	broad.mit.edu	37	8	133905936	133905961	+	Frame_Shift_Del	DEL	TCCTGGCTCCTGTGAGGAAGCAAAGC	-	-			TCGA-DJ-A13S-01A-11D-A10S-08	TCGA-DJ-A13S-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b564c58-40b0-4d9b-a372-12249a31a765	22668d43-8a18-4cd4-ad8e-ec4e37ce4a38	g.chr8:133905936_133905961delTCCTGGCTCCTGTGAGGAAGCAAAGC	uc003ytw.2	+	11	2804_2829	c.2763_2788delTCCTGGCTCCTGTGAGGAAGCAAAGC	c.(2761-2790)TGTCCTGGCTCCTGTGAGGAAGCAAAGCTCfs	p.C921fs		NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	921_930	Thyroglobulin type-1 8.				hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		TTCCCCTAGGTCCTGGCTCCTGTGAGGAAGCAAAGCTCCGTGTACT	0.469													21	120	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	44097391	44097391	+	IGR	DEL	G	-	-			TCGA-DJ-A13S-01A-11D-A10S-08	TCGA-DJ-A13S-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b564c58-40b0-4d9b-a372-12249a31a765	22668d43-8a18-4cd4-ad8e-ec4e37ce4a38	g.chr9:44097391delG								FAM75A6 (466661 upstream) : FAM27C (892845 downstream)																							TGCAGTTCATGGAAAATGCTT	0.353													9	417	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	67046331	67046331	+	IGR	DEL	T	-	-			TCGA-DJ-A13S-01A-11D-A10S-08	TCGA-DJ-A13S-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b564c58-40b0-4d9b-a372-12249a31a765	22668d43-8a18-4cd4-ad8e-ec4e37ce4a38	g.chr9:67046331delT								LOC442421 (543304 upstream) : AQP7P1 (207936 downstream)																							AAATAAAACATTTGGGAGCTA	0.577													3	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	102150493	102150494	+	IGR	INS	-	CTTCCTTC	CTTCCTTC			TCGA-DJ-A13S-01A-11D-A10S-08	TCGA-DJ-A13S-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b564c58-40b0-4d9b-a372-12249a31a765	22668d43-8a18-4cd4-ad8e-ec4e37ce4a38	g.chr9:102150493_102150494insCTTCCTTC								SEC61B (157593 upstream) : NR4A3 (433643 downstream)																							ATTTGCCCTGTcttccttcctt	0.050													4	8	---	---	---	---					
