Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
ZBTB40	9923	broad.mit.edu	37	1	22816958	22816958	+	Missense_Mutation	SNP	G	T	T			TCGA-DJ-A1QO-01A-11D-A14W-08	TCGA-DJ-A1QO-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	49920921-d55d-47bd-a264-4f42dbdf8b30	0f82f0a9-494f-45a2-b451-9a06cd7b11e0	g.chr1:22816958G>T	uc001bft.2	+	3	1028	c.517G>T	c.(517-519)GCT>TCT	p.A173S	ZBTB40_uc001bfu.2_Missense_Mutation_p.A173S|ZBTB40_uc009vqi.1_Missense_Mutation_p.A173S	NM_001083621	NP_001077090	Q9NUA8	ZBT40_HUMAN	zinc finger and BTB domain containing 40	173					bone mineralization|regulation of transcription, DNA-dependent|response to DNA damage stimulus|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;2.86e-26)|Colorectal(126;8.55e-08)|COAD - Colon adenocarcinoma(152;4.1e-06)|GBM - Glioblastoma multiforme(114;1.39e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000712)|KIRC - Kidney renal clear cell carcinoma(1967;0.00374)|STAD - Stomach adenocarcinoma(196;0.00645)|READ - Rectum adenocarcinoma(331;0.0693)|Lung(427;0.216)		CCCTGTGAAAGCTGAGACTGA	0.542000													13	219	---	---	---	---	6.72482e-11	8.96643e-11	0.003163	1	0
DNTT	1791	broad.mit.edu	37	10	98087290	98087290	+	Silent	SNP	C	T	T			TCGA-DJ-A1QO-01A-11D-A14W-08	TCGA-DJ-A1QO-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	49920921-d55d-47bd-a264-4f42dbdf8b30	0f82f0a9-494f-45a2-b451-9a06cd7b11e0	g.chr10:98087290C>T	uc001kmf.2	+	7	1110	c.940C>T	c.(940-942)CTG>TTG	p.L314L	DNTT_uc001kmg.2_Silent_p.L314L	NM_004088	NP_004079	P04053	TDT_HUMAN	terminal deoxynucleotidyltransferase isoform 1	314	Mediates interaction with DNTTIP2.				DNA modification	nucleus	DNA binding|DNA nucleotidylexotransferase activity|DNA-directed DNA polymerase activity|metal ion binding			ovary(1)	1		Colorectal(252;0.0815)|all_hematologic(284;0.224)		Epithelial(162;7.97e-08)|all cancers(201;1.89e-06)		CGTCAGTGTGCTGGTTAAAGA	0.522000													4	209	---	---	---	---	0	0	0.000248	0	0
CNGA4	1262	broad.mit.edu	37	11	6261928	6261928	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DJ-A1QO-01A-11D-A14W-08	TCGA-DJ-A1QO-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	49920921-d55d-47bd-a264-4f42dbdf8b30	0f82f0a9-494f-45a2-b451-9a06cd7b11e0	g.chr11:6261928C>T	uc001mco.2	+	4	1011	c.904C>T	c.(904-906)CGA>TGA	p.R302*	CNGA4_uc010raa.1_Nonsense_Mutation_p.R71*|CNGA4_uc001mcn.2_Nonsense_Mutation_p.R262*	NM_001037329	NP_001032406	Q8IV77	CNGA4_HUMAN	cyclic nucleotide gated channel alpha 4	302	Cytoplasmic (Potential).|IQ-type.				response to stimulus|sensory perception of smell		cAMP binding			skin(1)	1		Medulloblastoma(188;0.00263)|all_neural(188;0.026)|Breast(177;0.029)		Epithelial(150;2.04e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GCTGGAGCGGCGAGTTATTGA	0.542000													14	40	---	---	---	---	0	0	0.002450	0	0
HTATIP2	10553	broad.mit.edu	37	11	20404724	20404724	+	Silent	SNP	G	A	A			TCGA-DJ-A1QO-01A-11D-A14W-08	TCGA-DJ-A1QO-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	49920921-d55d-47bd-a264-4f42dbdf8b30	0f82f0a9-494f-45a2-b451-9a06cd7b11e0	g.chr11:20404724G>A	uc009yia.1	+	6	768	c.702G>A	c.(700-702)GGG>GGA	p.G234G	HTATIP2_uc009yib.1_Silent_p.G234G|HTATIP2_uc001mpx.2_Silent_p.G268G|HTATIP2_uc001mpz.2_Silent_p.G234G	NM_006410	NP_006401	Q9BUP3	HTAI2_HUMAN	HIV-1 Tat interactive protein 2, 30kDa isoform	234					angiogenesis|anti-apoptosis|apoptosis|cell differentiation|cellular amino acid metabolic process|induction of apoptosis|interspecies interaction between organisms|nuclear import|regulation of angiogenesis|regulation of transcription from RNA polymerase II promoter	cytoplasm|nuclear envelope	NAD binding|oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor|protein binding|transcription coactivator activity				0						ATGACCTGGGGAAAGCGCATG	0.473000													4	13	---	---	---	---	0	0	0.000248	0	0
RBM4B	83759	broad.mit.edu	37	11	66436191	66436191	+	Missense_Mutation	SNP	T	A	A			TCGA-DJ-A1QO-01A-11D-A14W-08	TCGA-DJ-A1QO-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	49920921-d55d-47bd-a264-4f42dbdf8b30	0f82f0a9-494f-45a2-b451-9a06cd7b11e0	g.chr11:66436191T>A	uc001oja.2	-	2	1653	c.984A>T	c.(982-984)TTA>TTT	p.L328F	RBM4B_uc001ojb.2_Missense_Mutation_p.L328F	NM_031492	NP_113680	Q9BQ04	RBM4B_HUMAN	RNA binding motif protein 4B	328	Interaction with TNPO3 (By similarity).				circadian regulation of gene expression|entrainment of circadian clock by photoperiod|mRNA processing|RNA splicing	nucleolus	nucleotide binding|RNA binding|zinc ion binding				0						AAGCCTGAGATAATTCACTCT	0.552000													19	40	---	---	---	---	0	0	0.006122	0	0
NAV3	89795	broad.mit.edu	37	12	78583811	78583811	+	Missense_Mutation	SNP	C	T	T			TCGA-DJ-A1QO-01A-11D-A14W-08	TCGA-DJ-A1QO-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	49920921-d55d-47bd-a264-4f42dbdf8b30	0f82f0a9-494f-45a2-b451-9a06cd7b11e0	g.chr12:78583811C>T	uc001syp.2	+	34	6276	c.6103C>T	c.(6103-6105)CCT>TCT	p.P2035S	NAV3_uc001syo.2_Missense_Mutation_p.P2013S|NAV3_uc010sub.1_Missense_Mutation_p.P1492S|NAV3_uc009zsf.2_Missense_Mutation_p.P844S	NM_014903	NP_055718	Q8IVL0	NAV3_HUMAN	neuron navigator 3	2035						nuclear outer membrane	ATP binding|nucleoside-triphosphatase activity			large_intestine(6)|ovary(5)|lung(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	17						TACGCTGATTCCTAAACCAAT	0.353000										HNSCC(70;0.22)			37	56	---	---	---	---	0	0	0.004289	0	0
MYCBP2	23077	broad.mit.edu	37	13	77673090	77673090	+	Silent	SNP	C	T	T			TCGA-DJ-A1QO-01A-11D-A14W-08	TCGA-DJ-A1QO-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	49920921-d55d-47bd-a264-4f42dbdf8b30	0f82f0a9-494f-45a2-b451-9a06cd7b11e0	g.chr13:77673090C>T	uc001vkf.2	-	57	8176	c.8085G>A	c.(8083-8085)GAG>GAA	p.E2695E	MYCBP2_uc010aev.2_Silent_p.E2099E|MYCBP2_uc001vkg.1_Silent_p.E218E|MYCBP2_uc010aew.2_Silent_p.E81E	NM_015057	NP_055872	O75592	MYCB2_HUMAN	MYC binding protein 2	2695	Ser-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ligase activity|protein binding|zinc ion binding			ovary(4)|breast(4)|skin(3)|lung(2)|pancreas(1)	14		Breast(118;0.212)|Acute lymphoblastic leukemia(28;0.22)		GBM - Glioblastoma multiforme(99;0.109)		TAGAGGACAGCTCTGATTTTC	0.413000													32	66	---	---	---	---	0	0	0.002836	0	0
Unknown	0	broad.mit.edu	37	14	19857036	19857036	+	RNA	SNP	A	G	G			TCGA-DJ-A1QO-01A-11D-A14W-08	TCGA-DJ-A1QO-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	49920921-d55d-47bd-a264-4f42dbdf8b30	0f82f0a9-494f-45a2-b451-9a06cd7b11e0	g.chr14:19857036A>G	uc001vvq.1	-	5		c.494T>C								Homo sapiens cDNA FLJ12852 fis, clone NT2RP2003445.																		CTGGATAATAAAGTTCATCTC	0.373000													6	138	---	---	---	---	0	0	0.001168	0	0
C14orf174	161394	broad.mit.edu	37	14	77844257	77844257	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A1QO-01A-11D-A14W-08	TCGA-DJ-A1QO-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	49920921-d55d-47bd-a264-4f42dbdf8b30	0f82f0a9-494f-45a2-b451-9a06cd7b11e0	g.chr14:77844257G>A	uc001xtq.1	+	1	496	c.496G>A	c.(496-498)GAA>AAA	p.E166K	TMED8_uc010ast.1_5'Flank|TMED8_uc001xto.1_5'Flank	NM_001010860	NP_001010860	Q9P1V8	SAM15_HUMAN	hypothetical protein LOC161394	166											0			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0278)		GCCACCAACGGAAACCATGTC	0.493000													35	82	---	---	---	---	0	0	0.003271	0	0
Unknown	0	broad.mit.edu	37	17	45128812	45128812	+	5'Flank	SNP	C	T	T			TCGA-DJ-A1QO-01A-11D-A14W-08	TCGA-DJ-A1QO-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	49920921-d55d-47bd-a264-4f42dbdf8b30	0f82f0a9-494f-45a2-b451-9a06cd7b11e0	g.chr17:45128812C>T	uc010wkl.1	-						uc010wkm.1_RNA					Homo sapiens cDNA FLJ38031 fis, clone CTONG2013348.																		AGTCCTGTTTCTGTGTGGATT	0.373000													3	39	---	---	---	---	0	0	0.004672	0	0
DNAI2	64446	broad.mit.edu	37	17	72278108	72278108	+	Missense_Mutation	SNP	T	A	A			TCGA-DJ-A1QO-01A-11D-A14W-08	TCGA-DJ-A1QO-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	49920921-d55d-47bd-a264-4f42dbdf8b30	0f82f0a9-494f-45a2-b451-9a06cd7b11e0	g.chr17:72278108T>A	uc002jkf.2	+	2	251	c.152T>A	c.(151-153)ATC>AAC	p.I51N	DNAI2_uc002jkg.2_RNA|DNAI2_uc010dfp.2_RNA	NM_023036	NP_075462	Q9GZS0	DNAI2_HUMAN	dynein, axonemal, intermediate polypeptide 2	51					cilium assembly	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	microtubule motor activity			ovary(2)|central_nervous_system(1)	3						GACACGGGCATCCAGTGCTCG	0.662000									Kartagener_syndrome				27	53	---	---	---	---	0	0	0.002096	0	0
KCMF1	56888	broad.mit.edu	37	2	85276643	85276643	+	Silent	SNP	C	T	T			TCGA-DJ-A1QO-01A-11D-A14W-08	TCGA-DJ-A1QO-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	49920921-d55d-47bd-a264-4f42dbdf8b30	0f82f0a9-494f-45a2-b451-9a06cd7b11e0	g.chr2:85276643C>T	uc002sox.3	+	6	1100	c.756C>T	c.(754-756)CGC>CGT	p.R252R		NM_020122	NP_064507	Q9P0J7	KCMF1_HUMAN	potassium channel modulatory factor 1	252	Potential.					intracellular	ligase activity|zinc ion binding			ovary(2)	2						AGACCGCACGCAACGCAACCC	0.537000													8	40	---	---	---	---	0	0	0.003080	0	0
TTN	7273	broad.mit.edu	37	2	179580380	179580380	+	Missense_Mutation	SNP	C	G	G			TCGA-DJ-A1QO-01A-11D-A14W-08	TCGA-DJ-A1QO-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	49920921-d55d-47bd-a264-4f42dbdf8b30	0f82f0a9-494f-45a2-b451-9a06cd7b11e0	g.chr2:179580380C>G	uc010zfg.1	-	86	22253	c.22029G>C	c.(22027-22029)GAG>GAC	p.E7343D	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.E4004D	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	8270							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GAATTTCAGTCTCGTCCTTAT	0.408000													9	18	---	---	---	---	0	0	0.004482	0	0
LOC96610	96610	broad.mit.edu	37	22	22664606	22664606	+	RNA	SNP	A	G	G			TCGA-DJ-A1QO-01A-11D-A14W-08	TCGA-DJ-A1QO-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	49920921-d55d-47bd-a264-4f42dbdf8b30	0f82f0a9-494f-45a2-b451-9a06cd7b11e0	g.chr22:22664606A>G	uc011aim.1	+	31		c.2121A>G			LOC96610_uc011aiq.1_RNA					Parts of antibodies, mostly variable regions.												0						GTCTTCATGCAAACTTGGTAT	0.398000													3	17	---	---	---	---	0	0	0.004672	0	0
ZNF141	7700	broad.mit.edu	37	4	366799	366799	+	Silent	SNP	A	G	G			TCGA-DJ-A1QO-01A-11D-A14W-08	TCGA-DJ-A1QO-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	49920921-d55d-47bd-a264-4f42dbdf8b30	0f82f0a9-494f-45a2-b451-9a06cd7b11e0	g.chr4:366799A>G	uc003gaa.2	+	5	751	c.573A>G	c.(571-573)GTA>GTG	p.V191V	ZNF141_uc003gab.2_Intron	NM_003441	NP_003432	Q15928	ZN141_HUMAN	zinc finger protein 141	191	C2H2-type 1; atypical.				anatomical structure morphogenesis|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nucleus	DNA binding|zinc ion binding				0						AACATAAGGTAATTCATGCTG	0.343000													18	71	---	---	---	---	0	0	0.008871	0	0
GPR98	84059	broad.mit.edu	37	5	90084066	90084066	+	Missense_Mutation	SNP	A	G	G			TCGA-DJ-A1QO-01A-11D-A14W-08	TCGA-DJ-A1QO-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	49920921-d55d-47bd-a264-4f42dbdf8b30	0f82f0a9-494f-45a2-b451-9a06cd7b11e0	g.chr5:90084066A>G	uc003kju.2	+	68	13928	c.13832A>G	c.(13831-13833)AAA>AGA	p.K4611R	GPR98_uc003kjt.2_Missense_Mutation_p.K2317R|GPR98_uc003kjw.2_Missense_Mutation_p.K272R	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	4611	Calx-beta 31.|Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		TTCATTATTAAACTTCATCTT	0.348000													19	29	---	---	---	---	0	0	0.008871	0	0
PCDHA8	56140	broad.mit.edu	37	5	140222123	140222123	+	Missense_Mutation	SNP	C	T	T			TCGA-DJ-A1QO-01A-11D-A14W-08	TCGA-DJ-A1QO-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	49920921-d55d-47bd-a264-4f42dbdf8b30	0f82f0a9-494f-45a2-b451-9a06cd7b11e0	g.chr5:140222123C>T	uc003lhs.2	+	1	1217	c.1217C>T	c.(1216-1218)TCG>TTG	p.S406L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhr.1_Missense_Mutation_p.S406L	NM_018911	NP_061734	Q9Y5H6	PCDA8_HUMAN	protocadherin alpha 8 isoform 1 precursor	406	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			upper_aerodigestive_tract(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AATTACTACTCGTTGGTGCTG	0.632000													71	146	---	---	---	---	0	0	0.003610	0	0
BAT2	7916	broad.mit.edu	37	6	31602045	31602045	+	Missense_Mutation	SNP	C	A	A	rs146122581	byFrequency	TCGA-DJ-A1QO-01A-11D-A14W-08	TCGA-DJ-A1QO-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	49920921-d55d-47bd-a264-4f42dbdf8b30	0f82f0a9-494f-45a2-b451-9a06cd7b11e0	g.chr6:31602045C>A	uc003nvb.3	+	19	5001	c.4752C>A	c.(4750-4752)TTC>TTA	p.F1584L	BAT2_uc011dnv.1_Intron|BAT2_uc003nvc.3_Missense_Mutation_p.F1584L	NM_080686	NP_542417	P48634	PRC2A_HUMAN	HLA-B associated transcript-2	1584	4 X 57 AA type A repeats.					cytoplasm|nucleus	protein binding				0						GCTCTGGATTCTTGGGCTCTA	0.527000													8	489	---	---	---	---	5.18039e-06	6.68438e-06	0.003080	1	0
TAAR5	9038	broad.mit.edu	37	6	132910122	132910122	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A1QO-01A-11D-A14W-08	TCGA-DJ-A1QO-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	49920921-d55d-47bd-a264-4f42dbdf8b30	0f82f0a9-494f-45a2-b451-9a06cd7b11e0	g.chr6:132910122G>A	uc003qdk.2	-	1	756	c.704C>T	c.(703-705)ACA>ATA	p.T235I		NM_003967	NP_003958	O14804	TAAR5_HUMAN	trace amine associated receptor 5	235	Cytoplasmic (Potential).				synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity			skin(1)	1	Breast(56;0.112)			OV - Ovarian serous cystadenocarcinoma(155;0.00604)|GBM - Glioblastoma multiforme(226;0.015)		TTTGCTCAATGTGGTAATCTG	0.502000													18	29	---	---	---	---	0	0	0.007413	0	0
ARID1B	57492	broad.mit.edu	37	6	157521926	157521926	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DJ-A1QO-01A-11D-A14W-08	TCGA-DJ-A1QO-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	49920921-d55d-47bd-a264-4f42dbdf8b30	0f82f0a9-494f-45a2-b451-9a06cd7b11e0	g.chr6:157521926C>T	uc003qqn.2	+	18	4296	c.4144C>T	c.(4144-4146)CAG>TAG	p.Q1382*	ARID1B_uc003qqo.2_Nonsense_Mutation_p.Q1342*|ARID1B_uc003qqp.2_Nonsense_Mutation_p.Q1329*	NM_017519	NP_059989	Q8NFD5	ARI1B_HUMAN	AT rich interactive domain 1B (SWI1-like)	1387					chromatin-mediated maintenance of transcription|nervous system development|transcription, DNA-dependent	SWI/SNF complex	DNA binding|protein binding|transcription coactivator activity			ovary(1)|breast(1)	2		Breast(66;0.000162)|Ovarian(120;0.0265)		OV - Ovarian serous cystadenocarcinoma(65;3.19e-17)|BRCA - Breast invasive adenocarcinoma(81;1.01e-05)		CAGCAGCCAGCAGCAGGAGAT	0.592000													26	44	---	---	---	---	0	0	0.003954	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-DJ-A1QO-01A-11D-A14W-08	TCGA-DJ-A1QO-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	49920921-d55d-47bd-a264-4f42dbdf8b30	0f82f0a9-494f-45a2-b451-9a06cd7b11e0	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				15	38	---	---	---	---	0	0	0.003163	0	0
MYOM2	9172	broad.mit.edu	37	8	2027691	2027691	+	Missense_Mutation	SNP	G	C	C			TCGA-DJ-A1QO-01A-11D-A14W-08	TCGA-DJ-A1QO-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	49920921-d55d-47bd-a264-4f42dbdf8b30	0f82f0a9-494f-45a2-b451-9a06cd7b11e0	g.chr8:2027691G>C	uc003wpx.3	+	13	1651	c.1513G>C	c.(1513-1515)GAA>CAA	p.E505Q	MYOM2_uc011kwi.1_Intron	NM_003970	NP_003961	P54296	MYOM2_HUMAN	myomesin 2	505					muscle contraction	myosin filament	structural constituent of muscle			ovary(4)|central_nervous_system(1)|skin(1)	6		Ovarian(12;0.0572)|Colorectal(14;0.0844)|Hepatocellular(245;0.217)		BRCA - Breast invasive adenocarcinoma(11;1.85e-05)|Colorectal(4;0.0101)|READ - Rectum adenocarcinoma(4;0.148)|COAD - Colon adenocarcinoma(4;0.179)		GGATGACCTTGAAGGTAAGTA	0.512000													6	230	---	---	---	---	0	0	0.001168	0	0
TUBBP5	643224	broad.mit.edu	37	9	141071097	141071097	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A1QO-01A-11D-A14W-08	TCGA-DJ-A1QO-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	49920921-d55d-47bd-a264-4f42dbdf8b30	0f82f0a9-494f-45a2-b451-9a06cd7b11e0	g.chr9:141071097G>A	uc004com.2	+	4	761	c.500G>A	c.(499-501)TGC>TAC	p.C167Y	TUBBP5_uc010ncq.2_3'UTR					RecName: Full=Putative tubulin beta-4q chain;												0						GTCACCACGTGCCTGCGCTTC	0.577000													5	60	---	---	---	---	0	0	0.000602	0	0
TUBBP5	643224	broad.mit.edu	37	9	141071110	141071110	+	Silent	SNP	A	G	G			TCGA-DJ-A1QO-01A-11D-A14W-08	TCGA-DJ-A1QO-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	49920921-d55d-47bd-a264-4f42dbdf8b30	0f82f0a9-494f-45a2-b451-9a06cd7b11e0	g.chr9:141071110A>G	uc004com.2	+	4	774	c.513A>G	c.(511-513)CCA>CCG	p.P171P	TUBBP5_uc010ncq.2_3'UTR					RecName: Full=Putative tubulin beta-4q chain;												0						TGCGCTTCCCAGGCCAGCTGA	0.597000													7	56	---	---	---	---	0	0	0.001984	0	0
Unknown	0	broad.mit.edu	37	10	42389493	42389493	+	IGR	DEL	C	-	-	rs34162163		TCGA-DJ-A1QO-01A-11D-A14W-08	TCGA-DJ-A1QO-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	49920921-d55d-47bd-a264-4f42dbdf8b30	0f82f0a9-494f-45a2-b451-9a06cd7b11e0	g.chr10:42389493delC								None (None upstream) : LOC441666 (437822 downstream)																							aatcattgaacggaattgaat	0.025													2	4	---	---	---	---					
FAM35A	54537	broad.mit.edu	37	10	88911590	88911591	+	Frame_Shift_Del	DEL	GT	-	-			TCGA-DJ-A1QO-01A-11D-A14W-08	TCGA-DJ-A1QO-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	49920921-d55d-47bd-a264-4f42dbdf8b30	0f82f0a9-494f-45a2-b451-9a06cd7b11e0	g.chr10:88911590_88911591delGT	uc001kei.3	+	3	593_594	c.479_480delGT	c.(478-480)GGTfs	p.G160fs		NM_019054	NP_061927	Q86V20	FA35A_HUMAN	hypothetical protein LOC54537	160										ovary(2)|skin(2)	4						GATATATGTGGTAAGAACTTTA	0.366													28	78	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	99068840	99068840	+	IGR	DEL	T	-	-			TCGA-DJ-A1QO-01A-11D-A14W-08	TCGA-DJ-A1QO-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	49920921-d55d-47bd-a264-4f42dbdf8b30	0f82f0a9-494f-45a2-b451-9a06cd7b11e0	g.chr10:99068840delT								ARHGAP19 (16427 upstream) : FRAT1 (10182 downstream)																							AAAAAGTTTGTTTTTTTTTTT	0.174													3	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	12	98073980	98073980	+	IGR	DEL	A	-	-			TCGA-DJ-A1QO-01A-11D-A14W-08	TCGA-DJ-A1QO-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	49920921-d55d-47bd-a264-4f42dbdf8b30	0f82f0a9-494f-45a2-b451-9a06cd7b11e0	g.chr12:98073980delA								RMST (115187 upstream) : LOC100128191 (832773 downstream)																							GGAAATATCTAAAAAAAAAAT	0.308													2	4	---	---	---	---					
TSC22D1	8848	broad.mit.edu	37	13	45148706	45148708	+	In_Frame_Del	DEL	TGC	-	-	rs112613609		TCGA-DJ-A1QO-01A-11D-A14W-08	TCGA-DJ-A1QO-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	49920921-d55d-47bd-a264-4f42dbdf8b30	0f82f0a9-494f-45a2-b451-9a06cd7b11e0	g.chr13:45148706_45148708delTGC	uc001uzn.3	-	1	1994_1996	c.1503_1505delGCA	c.(1501-1506)CAGCAA>CAA	p.501_502QQ>Q	TSC22D1_uc001uzo.1_In_Frame_Del_p.501_502QQ>Q	NM_183422	NP_904358	Q15714	T22D1_HUMAN	TSC22 domain family, member 1 isoform 1	501_502	Gln-rich.				transcription from RNA polymerase II promoter	cytoplasm|nucleus	protein binding|sequence-specific DNA binding transcription factor activity				0		all_hematologic(4;8.74e-08)|Acute lymphoblastic leukemia(4;1.78e-07)|Lung NSC(96;2.21e-05)|Breast(139;0.000625)|Prostate(109;0.000947)|Hepatocellular(98;0.0202)|Lung SC(185;0.0262)		GBM - Glioblastoma multiforme(144;0.000522)|BRCA - Breast invasive adenocarcinoma(63;0.118)		ttgttgttgttgctgctgctgct	0.409													7	97	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	65772750	65772750	+	IGR	DEL	G	-	-			TCGA-DJ-A1QO-01A-11D-A14W-08	TCGA-DJ-A1QO-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	49920921-d55d-47bd-a264-4f42dbdf8b30	0f82f0a9-494f-45a2-b451-9a06cd7b11e0	g.chr17:65772750delG								NOL11 (32484 upstream) : BPTF (49030 downstream)																							aaaaaaaaaagaaGACGTGGC	0.274													5	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	20	34341658	34341658	+	IGR	DEL	A	-	-			TCGA-DJ-A1QO-01A-11D-A14W-08	TCGA-DJ-A1QO-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	49920921-d55d-47bd-a264-4f42dbdf8b30	0f82f0a9-494f-45a2-b451-9a06cd7b11e0	g.chr20:34341658delA								RBM39 (11465 upstream) : PHF20 (18265 downstream)																							GAAATTAtggaaaaaaaaaaa	0.169													3	6	---	---	---	---					
MN1	4330	broad.mit.edu	37	22	28194931	28194933	+	In_Frame_Del	DEL	TGT	-	-			TCGA-DJ-A1QO-01A-11D-A14W-08	TCGA-DJ-A1QO-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	49920921-d55d-47bd-a264-4f42dbdf8b30	0f82f0a9-494f-45a2-b451-9a06cd7b11e0	g.chr22:28194931_28194933delTGT	uc003adj.2	-	1	2554_2556	c.1599_1601delACA	c.(1597-1602)CAACAG>CAG	p.533_534QQ>Q		NM_002430	NP_002421	Q10571	MN1_HUMAN	meningioma  1	533_534	Poly-Gln.						binding			central_nervous_system(3)|lung(3)|large_intestine(1)|breast(1)|skin(1)|ovary(1)	10						ctgctgctgctgttgctgctgct	0.389			T	ETV6	AML|meningioma								4	7	---	---	---	---					
ATXN1	6310	broad.mit.edu	37	6	16327864	16327865	+	In_Frame_Ins	INS	-	TGCTGC	TGCTGC			TCGA-DJ-A1QO-01A-11D-A14W-08	TCGA-DJ-A1QO-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	49920921-d55d-47bd-a264-4f42dbdf8b30	0f82f0a9-494f-45a2-b451-9a06cd7b11e0	g.chr6:16327864_16327865insTGCTGC	uc003nbt.2	-	8	1648_1649	c.677_678insGCAGCA	c.(676-678)CAC>CAGCAGCAC	p.225_226insQQ	ATXN1_uc010jpi.2_In_Frame_Ins_p.225_226insQQ|ATXN1_uc010jpj.1_Intron	NM_000332	NP_000323	P54253	ATX1_HUMAN	ataxin 1	225_226					cell death|negative regulation of transcription, DNA-dependent|nuclear export|RNA processing	cytoplasm|nuclear inclusion body|nuclear matrix|nucleoplasm	identical protein binding|poly(G) RNA binding|poly(U) RNA binding|protein binding|protein C-terminus binding|protein self-association			skin(3)|central_nervous_system(1)	4	Breast(50;0.063)|Ovarian(93;0.0733)	all_hematologic(90;0.000682)|Ovarian(999;0.00973)				CCCTGCTGAGGtgctgctgctg	0.366													8	11	---	---	---	---					
Unknown	0	broad.mit.edu	37	X	12844789	12844789	+	IGR	DEL	T	-	-			TCGA-DJ-A1QO-01A-11D-A14W-08	TCGA-DJ-A1QO-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	49920921-d55d-47bd-a264-4f42dbdf8b30	0f82f0a9-494f-45a2-b451-9a06cd7b11e0	g.chrX:12844789delT								PRPS2 (2447 upstream) : TLR7 (40413 downstream)																							aaaaaaaaaGTGCAAAAGAAA	0.174													3	5	---	---	---	---					
