Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
CROCCL1	84809	broad.mit.edu	37	1	16973996	16973996	+	5'Flank	SNP	A	G	G	rs150624255	by1000genomes	TCGA-DJ-A2Q3-01A-11D-A18F-08	TCGA-DJ-A2Q3-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	ddec4477-986f-45fd-9d67-3c0b60db69ce	75811819-5756-4255-9e6c-397b11987a25	g.chr1:16973996A>G	uc001azg.1	-						CROCCL1_uc001azi.1_5'Flank|MST1P2_uc009vow.2_RNA|MST1P2_uc010ocg.1_RNA|MST1P2_uc010och.1_RNA|MST1P2_uc010oci.1_RNA|MST1P2_uc001azk.2_RNA|MST1P2_uc001azl.3_RNA|MST1P2_uc009vox.2_RNA|MST1P2_uc001azm.3_RNA					Homo sapiens mRNA for FLJ00313 protein.												0						TATTGCCGGAATCCTGACGGC	0.642000													7	40	---	---	---	---	0	0	0.010729	0	0
CROCCL1	84809	broad.mit.edu	37	1	16974010	16974010	+	5'Flank	SNP	G	C	C	rs139681601	by1000genomes	TCGA-DJ-A2Q3-01A-11D-A18F-08	TCGA-DJ-A2Q3-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	ddec4477-986f-45fd-9d67-3c0b60db69ce	75811819-5756-4255-9e6c-397b11987a25	g.chr1:16974010G>C	uc001azg.1	-						CROCCL1_uc001azi.1_5'Flank|MST1P2_uc009vow.2_RNA|MST1P2_uc010ocg.1_RNA|MST1P2_uc010och.1_RNA|MST1P2_uc010oci.1_RNA|MST1P2_uc001azk.2_RNA|MST1P2_uc001azl.3_RNA|MST1P2_uc009vox.2_RNA|MST1P2_uc001azm.3_RNA					Homo sapiens mRNA for FLJ00313 protein.												0						TGACGGCTCCGAGCGGCCATG	0.627000													6	34	---	---	---	---	0	0	0.004482	0	0
FCRL5	83416	broad.mit.edu	37	1	157504590	157504590	+	Missense_Mutation	SNP	C	A	A			TCGA-DJ-A2Q3-01A-11D-A18F-08	TCGA-DJ-A2Q3-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	ddec4477-986f-45fd-9d67-3c0b60db69ce	75811819-5756-4255-9e6c-397b11987a25	g.chr1:157504590C>A	uc001fqu.2	-	8	1653	c.1495G>T	c.(1495-1497)GGT>TGT	p.G499C	FCRL5_uc009wsm.2_Missense_Mutation_p.G499C|FCRL5_uc010phv.1_Missense_Mutation_p.G499C|FCRL5_uc010phw.1_Missense_Mutation_p.G414C|FCRL5_uc001fqv.1_Missense_Mutation_p.G499C|FCRL5_uc010phx.1_Missense_Mutation_p.G250C	NM_031281	NP_112571	Q96RD9	FCRL5_HUMAN	Fc receptor-like 5	499	Extracellular (Potential).|Ig-like C2-type 5.					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(2)|central_nervous_system(1)	6	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.231)				TGTGGGGAACCTCTCTGGACT	0.527000													12	42	---	---	---	---	5.50884e-06	8.73816e-06	0.013537	1	0
IFFO1	25900	broad.mit.edu	37	12	6659951	6659951	+	Silent	SNP	G	A	A			TCGA-DJ-A2Q3-01A-11D-A18F-08	TCGA-DJ-A2Q3-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	ddec4477-986f-45fd-9d67-3c0b60db69ce	75811819-5756-4255-9e6c-397b11987a25	g.chr12:6659951G>A	uc001qpd.1	-	3	874	c.840C>T	c.(838-840)GCC>GCT	p.A280A	IFFO1_uc001qoy.2_RNA|IFFO1_uc001qpa.1_5'Flank|IFFO1_uc001qpb.1_5'Flank|IFFO1_uc001qpe.1_RNA|IFFO1_uc010sfe.1_Silent_p.A280A|IFFO1_uc001qpf.1_Silent_p.A280A|IFFO1_uc001qoz.1_5'Flank|IFFO1_uc001qpc.1_Silent_p.A280A|IFFO1_uc001qpg.2_5'Flank	NM_080730	NP_542768	Q0D2I5	IFFO1_HUMAN	intermediate filament family orphan isoform 2	280	Potential.					intermediate filament					0						CAGCCTCCTGGGCTTCCTGCA	0.582000													11	43	---	---	---	---	0	0	0.008291	0	0
FGD4	121512	broad.mit.edu	37	12	32778653	32778653	+	Missense_Mutation	SNP	A	T	T			TCGA-DJ-A2Q3-01A-11D-A18F-08	TCGA-DJ-A2Q3-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	ddec4477-986f-45fd-9d67-3c0b60db69ce	75811819-5756-4255-9e6c-397b11987a25	g.chr12:32778653A>T	uc001rkz.2	+	14	2178	c.1701A>T	c.(1699-1701)AAA>AAT	p.K567N	FGD4_uc001rlc.2_Missense_Mutation_p.K652N|FGD4_uc001rky.2_Missense_Mutation_p.K319N|FGD4_uc001rla.2_Missense_Mutation_p.K223N|FGD4_uc010ske.1_Missense_Mutation_p.K679N|FGD4_uc001rlb.1_RNA	NM_139241	NP_640334	Q96M96	FGD4_HUMAN	FYVE, RhoGEF and PH domain containing 4	567	FYVE-type.				actin cytoskeleton organization|apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Cdc42 GTPase activity|regulation of cell shape|small GTPase mediated signal transduction	cytoskeleton|cytosol|filopodium|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(2)|central_nervous_system(1)	3	Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.204)					TGTGTATGAAATGTAAAGAAC	0.378000													8	49	---	---	---	---	0	0	0.004482	0	0
WHAMML1	339005	broad.mit.edu	37	15	23205108	23205108	+	RNA	SNP	C	T	T			TCGA-DJ-A2Q3-01A-11D-A18F-08	TCGA-DJ-A2Q3-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	ddec4477-986f-45fd-9d67-3c0b60db69ce	75811819-5756-4255-9e6c-397b11987a25	g.chr15:23205108C>T	uc001yvg.2	-	2		c.687G>A			WHAMML1_uc010ayc.2_RNA|WHAMML1_uc010ayd.2_RNA|WHAMML1_uc010aye.1_RNA	NR_003521				Homo sapiens mRNA; cDNA DKFZp313L2232 (from clone DKFZp313L2232).												0						GTGGTTGCCACGGTAACTAAT	0.393000													3	9	---	---	---	---	0	0	0.004672	0	0
MARCH10	162333	broad.mit.edu	37	17	60837359	60837359	+	Missense_Mutation	SNP	A	C	C			TCGA-DJ-A2Q3-01A-11D-A18F-08	TCGA-DJ-A2Q3-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	ddec4477-986f-45fd-9d67-3c0b60db69ce	75811819-5756-4255-9e6c-397b11987a25	g.chr17:60837359A>C	uc010ddr.2	-	4	457	c.219T>G	c.(217-219)AGT>AGG	p.S73R	MARCH10_uc002jag.3_Missense_Mutation_p.S73R|MARCH10_uc010dds.2_Missense_Mutation_p.S73R|MARCH10_uc002jah.2_Missense_Mutation_p.S73R	NM_001100875	NP_001094345	Q8NA82	MARHA_HUMAN	ring finger protein 190	73							ligase activity|zinc ion binding				0						CATCCTCCTCACTAGAACTCT	0.423000													13	52	---	---	---	---	0	0	0.013537	0	0
GNAL	2774	broad.mit.edu	37	18	11753670	11753670	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A2Q3-01A-11D-A18F-08	TCGA-DJ-A2Q3-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	ddec4477-986f-45fd-9d67-3c0b60db69ce	75811819-5756-4255-9e6c-397b11987a25	g.chr18:11753670G>A	uc010dkz.2	+	4	508	c.262G>A	c.(262-264)GAT>AAT	p.D88N	GNAL_uc002kqc.2_Missense_Mutation_p.D165N|GNAL_uc002kqd.2_Missense_Mutation_p.D88N	NM_001142339	NP_001135811	P38405	GNAL_HUMAN	guanine nucleotide binding protein (G protein),	88					activation of adenylate cyclase activity by dopamine receptor signaling pathway|inhibition of adenylate cyclase activity by G-protein signaling pathway|sensory perception of smell|synaptic transmission	heterotrimeric G-protein complex	adenylate cyclase activity|G-protein beta/gamma-subunit complex binding|G-protein-coupled receptor binding|GTP binding|GTPase activity|signal transducer activity			ovary(1)	1						AAATGTTAAAGATGCTATCGT	0.318000													11	16	---	---	---	---	0	0	0.016723	0	0
UBXN6	80700	broad.mit.edu	37	19	4446104	4446104	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A2Q3-01A-11D-A18F-08	TCGA-DJ-A2Q3-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	ddec4477-986f-45fd-9d67-3c0b60db69ce	75811819-5756-4255-9e6c-397b11987a25	g.chr19:4446104G>A	uc002man.1	-	10	1238	c.1142C>T	c.(1141-1143)GCC>GTC	p.A381V	UBXN6_uc010dty.1_Missense_Mutation_p.A285V|UBXN6_uc002mam.1_Missense_Mutation_p.A328V	NM_025241	NP_079517	Q9BZV1	UBXN6_HUMAN	UBX domain protein 6	381	UBX.					microtubule organizing center|nucleus	protein binding				0						CCCTCCCGAGGCCAGCAGCTC	0.677000													8	36	---	---	---	---	0	0	0.003080	0	0
C19orf60	55049	broad.mit.edu	37	19	18701721	18701721	+	Missense_Mutation	SNP	C	T	T			TCGA-DJ-A2Q3-01A-11D-A18F-08	TCGA-DJ-A2Q3-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	ddec4477-986f-45fd-9d67-3c0b60db69ce	75811819-5756-4255-9e6c-397b11987a25	g.chr19:18701721C>T	uc002njv.3	+	4	628	c.511C>T	c.(511-513)CGG>TGG	p.R171W	C19orf60_uc010ebs.2_Missense_Mutation_p.R149W|C19orf60_uc002njw.3_Missense_Mutation_p.R183W|C19orf60_uc002nju.2_Missense_Mutation_p.R183W	NM_001100418	NP_001093888	Q96EN9	CS060_HUMAN	hypothetical protein LOC55049 isoform 1	171							protein binding				0						GGACGCTGTACGGATGCAGCA	0.622000													3	11	---	---	---	---	0	0	0.004672	0	0
TRPM4	54795	broad.mit.edu	37	19	49671841	49671841	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A2Q3-01A-11D-A18F-08	TCGA-DJ-A2Q3-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	ddec4477-986f-45fd-9d67-3c0b60db69ce	75811819-5756-4255-9e6c-397b11987a25	g.chr19:49671841G>A	uc002pmw.2	+	6	716	c.644G>A	c.(643-645)GGT>GAT	p.G215D	TRPM4_uc010emu.2_Missense_Mutation_p.G215D|TRPM4_uc010yak.1_Translation_Start_Site|TRPM4_uc002pmx.2_Missense_Mutation_p.G41D|TRPM4_uc010emv.2_Missense_Mutation_p.G100D|TRPM4_uc010yal.1_Translation_Start_Site	NM_017636	NP_060106	Q8TD43	TRPM4_HUMAN	transient receptor potential cation channel,	215	Cytoplasmic (Potential).				dendritic cell chemotaxis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell proliferation|protein sumoylation|regulation of T cell cytokine production	endoplasmic reticulum|Golgi apparatus|integral to membrane|plasma membrane	ATP binding|calcium activated cation channel activity|calmodulin binding			ovary(1)|central_nervous_system(1)	2		all_lung(116;8.54e-05)|Lung NSC(112;0.000139)|all_neural(266;0.0506)|Ovarian(192;0.15)		all cancers(93;2.88e-05)|OV - Ovarian serous cystadenocarcinoma(262;0.000222)|GBM - Glioblastoma multiforme(486;0.00339)|Epithelial(262;0.00751)		CGGTGGCGCGGTGACCCGGAG	0.517000													12	37	---	---	---	---	0	0	0.013537	0	0
TTN	7273	broad.mit.edu	37	2	179419249	179419249	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DJ-A2Q3-01A-11D-A18F-08	TCGA-DJ-A2Q3-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	ddec4477-986f-45fd-9d67-3c0b60db69ce	75811819-5756-4255-9e6c-397b11987a25	g.chr2:179419249G>A	uc010zfg.1	-	281	81345	c.81121C>T	c.(81121-81123)CGA>TGA	p.R27041*	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Nonsense_Mutation_p.R20736*|TTN_uc010zfi.1_Nonsense_Mutation_p.R20669*|TTN_uc010zfj.1_Nonsense_Mutation_p.R20544*	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	27968							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTCACGGCTCGGACCCGGAAG	0.433000													9	21	---	---	---	---	0	0	0.004482	0	0
D2HGDH	728294	broad.mit.edu	37	2	242680473	242680473	+	Silent	SNP	A	G	G			TCGA-DJ-A2Q3-01A-11D-A18F-08	TCGA-DJ-A2Q3-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	ddec4477-986f-45fd-9d67-3c0b60db69ce	75811819-5756-4255-9e6c-397b11987a25	g.chr2:242680473A>G	uc002wce.1	+	3	491	c.318A>G	c.(316-318)CCA>CCG	p.P106P	D2HGDH_uc010zpc.1_RNA|D2HGDH_uc010fzq.1_5'UTR|D2HGDH_uc002wcg.1_RNA	NM_152783	NP_689996	Q8N465	D2HDH_HUMAN	D-2-hydroxyglutarate dehydrogenase precursor	106	FAD-binding PCMH-type.				2-oxoglutarate metabolic process|cellular protein metabolic process|response to cobalt ion|response to manganese ion|response to zinc ion	mitochondrial matrix	(R)-2-hydroxyglutarate dehydrogenase activity|flavin adenine dinucleotide binding|protein binding				0		all_cancers(19;1.09e-40)|all_epithelial(40;2.03e-18)|Breast(86;1.53e-05)|all_lung(227;0.00338)|Renal(207;0.00502)|Ovarian(221;0.00716)|Lung NSC(271;0.012)|Esophageal squamous(248;0.129)|Melanoma(123;0.144)|all_hematologic(139;0.158)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;4.59e-33)|all cancers(36;9.89e-31)|OV - Ovarian serous cystadenocarcinoma(60;7.89e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.63e-06)|Lung(119;0.000152)|LUSC - Lung squamous cell carcinoma(224;0.00154)|Colorectal(34;0.0129)|COAD - Colon adenocarcinoma(134;0.0833)		TGCTGAGGCCACGGACGTCGG	0.622000													4	26	---	---	---	---	0	0	0.001168	0	0
CCRL1	51554	broad.mit.edu	37	3	132319255	132319255	+	Missense_Mutation	SNP	A	C	C			TCGA-DJ-A2Q3-01A-11D-A18F-08	TCGA-DJ-A2Q3-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	ddec4477-986f-45fd-9d67-3c0b60db69ce	75811819-5756-4255-9e6c-397b11987a25	g.chr3:132319255A>C	uc003eow.2	+	2	97	c.14A>C	c.(13-15)CAG>CCG	p.Q5P	ACAD11_uc003eov.3_Intron|ACAD11_uc011blr.1_Intron|CCRL1_uc003eox.2_Missense_Mutation_p.Q5P	NM_016557	NP_057641	Q9NPB9	CCRL1_HUMAN	chemokine (C-C motif) receptor-like 1	5	Extracellular (Potential).				chemotaxis|immune response	integral to plasma membrane	C-C chemokine receptor activity				0						GCTTTGGAACAGAACCAGTCA	0.338000													5	7	---	---	---	---	0	0	0.001168	0	0
GPR151	134391	broad.mit.edu	37	5	145895152	145895152	+	Missense_Mutation	SNP	A	T	T			TCGA-DJ-A2Q3-01A-11D-A18F-08	TCGA-DJ-A2Q3-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	ddec4477-986f-45fd-9d67-3c0b60db69ce	75811819-5756-4255-9e6c-397b11987a25	g.chr5:145895152A>T	uc003lod.1	-	1	525	c.525T>A	c.(523-525)TTT>TTA	p.F175L		NM_194251	NP_919227	Q8TDV0	GP151_HUMAN	G protein-coupled receptor 151	175	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TGATGGTGCTAAAGAACCATT	0.522000													12	39	---	---	---	---	0	0	0.016723	0	0
ZNF679	168417	broad.mit.edu	37	7	63720697	63720697	+	Silent	SNP	A	G	G			TCGA-DJ-A2Q3-01A-11D-A18F-08	TCGA-DJ-A2Q3-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	ddec4477-986f-45fd-9d67-3c0b60db69ce	75811819-5756-4255-9e6c-397b11987a25	g.chr7:63720697A>G	uc003tsx.2	+	3	407	c.138A>G	c.(136-138)TTA>TTG	p.L46L		NM_153363	NP_699194	Q8IYX0	ZN679_HUMAN	zinc finger protein 679	46	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						ATGTGATGTTAGAGAACTACA	0.378000													3	124	---	---	---	---	0	0	0.004672	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-DJ-A2Q3-01A-11D-A18F-08	TCGA-DJ-A2Q3-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	ddec4477-986f-45fd-9d67-3c0b60db69ce	75811819-5756-4255-9e6c-397b11987a25	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				10	50	---	---	---	---	0	0	0.016723	0	0
SH2D4A	63898	broad.mit.edu	37	8	19231046	19231046	+	Missense_Mutation	SNP	A	G	G			TCGA-DJ-A2Q3-01A-11D-A18F-08	TCGA-DJ-A2Q3-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	ddec4477-986f-45fd-9d67-3c0b60db69ce	75811819-5756-4255-9e6c-397b11987a25	g.chr8:19231046A>G	uc003wzb.2	+	8	1259	c.923A>G	c.(922-924)CAG>CGG	p.Q308R	SH2D4A_uc011kym.1_Missense_Mutation_p.Q263R|SH2D4A_uc003wzc.2_Missense_Mutation_p.Q308R	NM_022071	NP_071354	Q9H788	SH24A_HUMAN	SH2 domain containing 4A	308						cytoplasm|nucleus	protein binding				0				Colorectal(111;0.0732)		AACAGAAATCAGGGAGTGGTG	0.358000													3	30	---	---	---	---	0	0	0.014758	0	0
EBF2	64641	broad.mit.edu	37	8	25890631	25890631	+	Missense_Mutation	SNP	T	C	C			TCGA-DJ-A2Q3-01A-11D-A18F-08	TCGA-DJ-A2Q3-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	ddec4477-986f-45fd-9d67-3c0b60db69ce	75811819-5756-4255-9e6c-397b11987a25	g.chr8:25890631T>C	uc003xes.1	-	6	538	c.521A>G	c.(520-522)GAG>GGG	p.E174G	PPP2R2A_uc003xek.2_Intron|EBF2_uc003xet.1_Missense_Mutation_p.E174G	NM_022659	NP_073150	Q9HAK2	COE2_HUMAN	early B-cell factor 2	174					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|metal ion binding			ovary(3)|skin(1)	4		all_cancers(63;0.0989)|Ovarian(32;2.74e-05)|all_epithelial(46;0.0608)|Prostate(55;0.0845)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0277)|Epithelial(17;3.29e-10)|Colorectal(74;0.00383)|COAD - Colon adenocarcinoma(73;0.00738)		CGATGGAGTCTCATTTCGGTT	0.393000													3	79	---	---	---	---	0	0	0.004672	0	0
UNC13B	10497	broad.mit.edu	37	9	35399705	35399705	+	Missense_Mutation	SNP	C	G	G			TCGA-DJ-A2Q3-01A-11D-A18F-08	TCGA-DJ-A2Q3-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	ddec4477-986f-45fd-9d67-3c0b60db69ce	75811819-5756-4255-9e6c-397b11987a25	g.chr9:35399705C>G	uc003zwq.2	+	35	4360	c.4068C>G	c.(4066-4068)GAC>GAG	p.D1356E	UNC13B_uc003zwr.2_Missense_Mutation_p.D1356E	NM_006377	NP_006368	O14795	UN13B_HUMAN	UNC13 (C. elegans)-like	1356	MHD2.				excretion|induction of apoptosis|intracellular signal transduction	cell junction|Golgi apparatus|synapse	metal ion binding|receptor activity			ovary(3)|large_intestine(1)|skin(1)	5	all_epithelial(49;0.212)		LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)|STAD - Stomach adenocarcinoma(86;0.194)			CAGTCCTTGACCTCGCCCTGG	0.547000													11	159	---	---	---	---	0	0	0.013537	0	0
Unknown	0	broad.mit.edu	37	1	700514	700514	+	RNA	DEL	A	-	-			TCGA-DJ-A2Q3-01A-11D-A18F-08	TCGA-DJ-A2Q3-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	ddec4477-986f-45fd-9d67-3c0b60db69ce	75811819-5756-4255-9e6c-397b11987a25	g.chr1:700514delA	uc001abo.2	-	7		c.1040delT								Homo sapiens cDNA clone IMAGE:4129277, partial cds.																		actccatctcaaaaaaaaaaa	0.179													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	112210759	112210759	+	IGR	DEL	A	-	-			TCGA-DJ-A2Q3-01A-11D-A18F-08	TCGA-DJ-A2Q3-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	ddec4477-986f-45fd-9d67-3c0b60db69ce	75811819-5756-4255-9e6c-397b11987a25	g.chr10:112210759delA								SMNDC1 (146052 upstream) : DUSP5 (46866 downstream)																							GATGCAGaagaaaaaaaaaaa	0.408													4	8	---	---	---	---					
Unknown	0	broad.mit.edu	37	11	87191989	87191989	+	IGR	DEL	T	-	-			TCGA-DJ-A2Q3-01A-11D-A18F-08	TCGA-DJ-A2Q3-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	ddec4477-986f-45fd-9d67-3c0b60db69ce	75811819-5756-4255-9e6c-397b11987a25	g.chr11:87191989delT								TMEM135 (157421 upstream) : RAB38 (654442 downstream)																							CTCACCCAGCTTTTTTTTGCC	0.443													3	6	---	---	---	---					
ADAM6	8755	broad.mit.edu	37	14	106354475	106354481	+	Splice_Site	DEL	ACAGGAG	-	-			TCGA-DJ-A2Q3-01A-11D-A18F-08	TCGA-DJ-A2Q3-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	ddec4477-986f-45fd-9d67-3c0b60db69ce	75811819-5756-4255-9e6c-397b11987a25	g.chr14:106354475_106354481delACAGGAG	uc010tyt.1	-	3087		c.49304_splice	c.e3087+0		KIAA0125_uc001ysq.2_5'Flank|KIAA0125_uc001ysr.2_5'Flank					Parts of antibodies, mostly variable regions.												0						TCCTGTCCCTACAGGAGACTGGTGTCA	0.541													6	10	---	---	---	---					
ADAM6	8755	broad.mit.edu	37	14	106774086	106774087	+	Splice_Site	INS	-	AGTAATACACGGCA	AGTAATACACGGCA			TCGA-DJ-A2Q3-01A-11D-A18F-08	TCGA-DJ-A2Q3-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	ddec4477-986f-45fd-9d67-3c0b60db69ce	75811819-5756-4255-9e6c-397b11987a25	g.chr14:106774086_106774087insAGTAATACACGGCA	uc010tyt.1	-	430		c.15674_splice	c.e430+1							Parts of antibodies, mostly variable regions.												0						GCCTCTTGCACGTGTCCTCAGC	0.550													5	7	---	---	---	---					
LYPD6B	130576	broad.mit.edu	37	2	150017336	150017336	+	Frame_Shift_Del	DEL	T	-	-			TCGA-DJ-A2Q3-01A-11D-A18F-08	TCGA-DJ-A2Q3-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	ddec4477-986f-45fd-9d67-3c0b60db69ce	75811819-5756-4255-9e6c-397b11987a25	g.chr2:150017336delT	uc002twv.1	+	3	465	c.64delT	c.(64-66)TTCfs	p.F22fs	LYPD6B_uc002tww.1_Intron|LYPD6B_uc002twx.1_Intron	NM_177964	NP_808879	Q8NI32	LPD6B_HUMAN	LY6/PLAUR domain containing 6B	Error:Variant_position_missing_in_Q8NI32_after_alignment						anchored to membrane|plasma membrane					0						GACAACCACATTCTCCTTCTC	0.468													2	4	---	---	---	---					
IFT52	51098	broad.mit.edu	37	20	42271199	42271199	+	Frame_Shift_Del	DEL	C	-	-			TCGA-DJ-A2Q3-01A-11D-A18F-08	TCGA-DJ-A2Q3-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	ddec4477-986f-45fd-9d67-3c0b60db69ce	75811819-5756-4255-9e6c-397b11987a25	g.chr20:42271199delC	uc002xkw.2	+	13	1323	c.1201delC	c.(1201-1203)CAGfs	p.Q401fs	IFT52_uc002xky.2_Frame_Shift_Del_p.Q401fs|IFT52_uc002xkx.2_RNA|IFT52_uc010ggn.2_Frame_Shift_Del_p.Q377fs|IFT52_uc002xkz.2_Intron	NM_016004	NP_057088	Q9Y366	IFT52_HUMAN	intraflagellar transport 52 homolog	401						intraflagellar transport particle B|microtubule-based flagellum	protein C-terminus binding			ovary(2)	2		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.0031)			AAAGGACCAACAGGATGCCAA	0.448													11	34	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	2433788	2433788	+	IGR	DEL	T	-	-			TCGA-DJ-A2Q3-01A-11D-A18F-08	TCGA-DJ-A2Q3-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	ddec4477-986f-45fd-9d67-3c0b60db69ce	75811819-5756-4255-9e6c-397b11987a25	g.chr7:2433788delT								EIF3B (13413 upstream) : CHST12 (9435 downstream)																							tttcttcttcttttttttttt	0.214													5	11	---	---	---	---					
NEFM	4741	broad.mit.edu	37	8	24774945	24774945	+	Frame_Shift_Del	DEL	A	-	-			TCGA-DJ-A2Q3-01A-11D-A18F-08	TCGA-DJ-A2Q3-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	ddec4477-986f-45fd-9d67-3c0b60db69ce	75811819-5756-4255-9e6c-397b11987a25	g.chr8:24774945delA	uc003xed.3	+	3	1610	c.1577delA	c.(1576-1578)GAAfs	p.E526fs	NEFM_uc011lac.1_Frame_Shift_Del_p.E526fs|NEFM_uc010lue.2_Frame_Shift_Del_p.E150fs	NM_005382	NP_005373	P07197	NFM_HUMAN	neurofilament, medium polypeptide 150kDa isoform	526	Tail.					neurofilament	protein binding|structural constituent of cytoskeleton			breast(1)	1		Prostate(55;0.157)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0197)|Epithelial(17;2.44e-10)|Colorectal(74;0.0108)|COAD - Colon adenocarcinoma(73;0.0375)		gaggaaggggaaaaggaggaa	0.244													2	4	---	---	---	---					
KIAA2026	158358	broad.mit.edu	37	9	5968044	5968044	+	Frame_Shift_Del	DEL	T	-	-			TCGA-DJ-A2Q3-01A-11D-A18F-08	TCGA-DJ-A2Q3-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	ddec4477-986f-45fd-9d67-3c0b60db69ce	75811819-5756-4255-9e6c-397b11987a25	g.chr9:5968044delT	uc003zjq.3	-	3	2403	c.2187delA	c.(2185-2187)AAAfs	p.K729fs		NM_001017969	NP_001017969	Q5HYC2	K2026_HUMAN	hypothetical protein LOC158358	729	Lys-rich.									ovary(2)|central_nervous_system(1)	3		Acute lymphoblastic leukemia(23;0.158)		GBM - Glioblastoma multiforme(50;0.00155)|Lung(218;0.124)		TGTGTTTTGCTTTTTTTTTGA	0.323													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	X	26180110	26180111	+	IGR	INS	-	TC	TC			TCGA-DJ-A2Q3-01A-11D-A18F-08	TCGA-DJ-A2Q3-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	ddec4477-986f-45fd-9d67-3c0b60db69ce	75811819-5756-4255-9e6c-397b11987a25	g.chrX:26180110_26180111insTC								MAGEB18 (21258 upstream) : MAGEB6 (30446 downstream)																							CAAGATATGTATTTCTTTTGTC	0.356													4	7	---	---	---	---					
