Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
FBXO42	54455	broad.mit.edu	37	1	16577866	16577866	+	Missense_Mutation	SNP	G	C	C			TCGA-E8-A2EA-01A-11D-A17V-08	TCGA-E8-A2EA-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5cab1bb-ba14-4072-84f9-e3d3eaa2046f	6c7bc841-870d-438c-9692-1e6660eceb58	g.chr1:16577866G>C	uc001ayg.2	-	10	1669	c.1453C>G	c.(1453-1455)CGA>GGA	p.R485G	FBXO42_uc001aye.3_Missense_Mutation_p.R203G|FBXO42_uc001ayf.2_Missense_Mutation_p.R392G	NM_018994	NP_061867	Q6P3S6	FBX42_HUMAN	F-box protein 42	485										upper_aerodigestive_tract(1)|skin(1)	2		Colorectal(325;0.000147)|Renal(390;0.00145)|Breast(348;0.00224)|Lung NSC(340;0.00475)|all_lung(284;0.00671)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0646)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0193)|Colorectal(212;3.16e-07)|COAD - Colon adenocarcinoma(227;1.46e-05)|BRCA - Breast invasive adenocarcinoma(304;4.37e-05)|Kidney(64;0.000246)|KIRC - Kidney renal clear cell carcinoma(64;0.00336)|STAD - Stomach adenocarcinoma(313;0.0139)|READ - Rectum adenocarcinoma(331;0.0693)		GATCCTCGTCGGGGGGCCAAA	0.483000													4	71	---	---	---	---	0	0	1.23904e-05	0	0
NBPF1	55672	broad.mit.edu	37	1	16913547	16913548	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-E8-A2EA-01A-11D-A17V-08	TCGA-E8-A2EA-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5cab1bb-ba14-4072-84f9-e3d3eaa2046f	6c7bc841-870d-438c-9692-1e6660eceb58	g.chr1:16913547_16913548GG>TT	uc009vos.1	-	11	1663_1664	c.775_776CC>AA	c.(775-777)CCA>AAA	p.P259K	NBPF1_uc009vot.1_5'UTR|NBPF1_uc001ayz.1_5'UTR|NBPF1_uc010oce.1_Intron	NM_017940	NP_060410	Q3BBV0	NBPF1_HUMAN	hypothetical protein LOC55672	259	NBPF 1.					cytoplasm					0				UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		GAGGCTACCTGGGAGAATGTTT	0.401000													16	646	---	---	---	---	0	0	6.4e-05	0	0
NBPF1	55672	broad.mit.edu	37	1	16914223	16914224	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-E8-A2EA-01A-11D-A17V-08	TCGA-E8-A2EA-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5cab1bb-ba14-4072-84f9-e3d3eaa2046f	6c7bc841-870d-438c-9692-1e6660eceb58	g.chr1:16914223_16914224GG>TT	uc009vos.1	-	10	1450_1451	c.562_563CC>AA	c.(562-564)CCC>AAC	p.P188N	NBPF1_uc009vot.1_5'Flank|NBPF1_uc001ayz.1_5'Flank|NBPF1_uc010oce.1_Intron	NM_017940	NP_060410	Q3BBV0	NBPF1_HUMAN	hypothetical protein LOC55672	188	NBPF 1.					cytoplasm					0				UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		GTGTTACCTGGGGGCAGATGAT	0.441000													12	693	---	---	---	---	0	0	6.4e-05	0	0
RTCD1	8634	broad.mit.edu	37	1	100752669	100752669	+	Missense_Mutation	SNP	G	C	C			TCGA-E8-A2EA-01A-11D-A17V-08	TCGA-E8-A2EA-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5cab1bb-ba14-4072-84f9-e3d3eaa2046f	6c7bc841-870d-438c-9692-1e6660eceb58	g.chr1:100752669G>C	uc001dtc.2	+	10	1127	c.909G>C	c.(907-909)ATG>ATC	p.M303I	RTCD1_uc001dtd.2_Missense_Mutation_p.M316I	NM_003729	NP_003720	O00442	RTC1_HUMAN	RNA terminal phosphate cyclase domain 1 isoform	303					RNA processing	mitochondrion|nucleoplasm	ATP binding|protein binding|RNA binding|RNA-3'-phosphate cyclase activity				0		all_epithelial(167;0.000686)|all_lung(203;0.0154)|Lung NSC(277;0.0155)		Epithelial(280;0.0513)|all cancers(265;0.0902)|COAD - Colon adenocarcinoma(174;0.149)|Colorectal(144;0.169)|Lung(183;0.196)		TTGTTTTCATGGCATTAGCCA	0.338000													3	80	---	---	---	---	0	0	6.4e-05	0	0
DENND2D	79961	broad.mit.edu	37	1	111741363	111741363	+	Missense_Mutation	SNP	C	G	G			TCGA-E8-A2EA-01A-11D-A17V-08	TCGA-E8-A2EA-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5cab1bb-ba14-4072-84f9-e3d3eaa2046f	6c7bc841-870d-438c-9692-1e6660eceb58	g.chr1:111741363C>G	uc001eak.1	-	3	445	c.245G>C	c.(244-246)CGG>CCG	p.R82P	DENND2D_uc001eal.1_Missense_Mutation_p.R79P	NM_024901	NP_079177	Q9H6A0	DEN2D_HUMAN	DENN/MADD domain containing 2D	82	UDENN.									ovary(1)	1		all_cancers(81;0.00198)|all_epithelial(167;0.000686)|all_lung(203;0.00318)|Lung NSC(277;0.00499)		Lung(183;0.0162)|Colorectal(144;0.069)|all cancers(265;0.0757)|LUSC - Lung squamous cell carcinoma(189;0.0845)|Epithelial(280;0.114)|COAD - Colon adenocarcinoma(174;0.14)		CAGGTTCTCCCGCTATAAGGC	0.552000													3	38	---	---	---	---	0	0	6.4e-05	0	0
FLG	2312	broad.mit.edu	37	1	152281340	152281341	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-E8-A2EA-01A-11D-A17V-08	TCGA-E8-A2EA-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5cab1bb-ba14-4072-84f9-e3d3eaa2046f	6c7bc841-870d-438c-9692-1e6660eceb58	g.chr1:152281340_152281341GG>TT	uc001ezu.1	-	3	6057_6058	c.6021_6022CC>AA	c.(6019-6024)TCCCAC>TCAAAC	p.H2008N		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	2008	Ser-rich.|Filaggrin 12.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			AGCTGGTGGTGGGATCCATGTC	0.554000									Ichthyosis				19	879	---	---	---	---	0	0	6.4e-05	0	0
UBAP2L	9898	broad.mit.edu	37	1	154239019	154239020	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-E8-A2EA-01A-11D-A17V-08	TCGA-E8-A2EA-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5cab1bb-ba14-4072-84f9-e3d3eaa2046f	6c7bc841-870d-438c-9692-1e6660eceb58	g.chr1:154239019_154239020CG>AT	uc001fep.3	+	25	3112_3113	c.2945_2946CG>AT	c.(2944-2946)TCG>TAT	p.S982Y	UBAP2L_uc010pel.1_Missense_Mutation_p.S992Y|UBAP2L_uc001feq.2_Missense_Mutation_p.S178Y|UBAP2L_uc001fer.2_Missense_Mutation_p.S178Y	NM_014847	NP_055662	Q14157	UBP2L_HUMAN	ubiquitin associated protein 2-like isoform a	982					binding of sperm to zona pellucida		protein binding			ovary(1)|central_nervous_system(1)	2	all_lung(78;1.09e-30)|Lung NSC(65;1.66e-28)|Hepatocellular(266;0.0877)		LUSC - Lung squamous cell carcinoma(543;0.185)			CCAGATATCTCGGGTTCTGTGT	0.500000													7	263	---	---	---	---	0	0	6.4e-05	0	0
C1orf110	339512	broad.mit.edu	37	1	162824952	162824952	+	Missense_Mutation	SNP	G	C	C	rs150783672	by1000genomes	TCGA-E8-A2EA-01A-11D-A17V-08	TCGA-E8-A2EA-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5cab1bb-ba14-4072-84f9-e3d3eaa2046f	6c7bc841-870d-438c-9692-1e6660eceb58	g.chr1:162824952G>C	uc001gck.2	-	4	687	c.512C>G	c.(511-513)CCC>CGC	p.P171R	C1orf110_uc009wuw.1_Intron|C1orf110_uc009wux.1_Missense_Mutation_p.P170R	NM_178550	NP_848645	Q86UF4	CA110_HUMAN	hypothetical protein LOC339512	171											0						GCCCTTGCTGGGGTCTACGTC	0.468000													4	220	---	---	---	---	0	0	3.59834e-05	0	0
NUP133	55746	broad.mit.edu	37	1	229577762	229577763	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-E8-A2EA-01A-11D-A17V-08	TCGA-E8-A2EA-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5cab1bb-ba14-4072-84f9-e3d3eaa2046f	6c7bc841-870d-438c-9692-1e6660eceb58	g.chr1:229577762_229577763CG>AT	uc001htn.2	-	26	3451_3452	c.3359_3360CG>AT	c.(3358-3360)CCG>CAT	p.P1120H		NM_018230	NP_060700	Q8WUM0	NU133_HUMAN	nucleoporin 133kDa	1120					carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA export from nucleus|nuclear pore organization|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	condensed chromosome kinetochore|cytosol|Nup107-160 complex	nucleocytoplasmic transporter activity|protein binding			breast(4)|skin(2)|ovary(1)	7	Breast(184;0.104)|Ovarian(103;0.249)	Prostate(94;0.167)				CTTTCACCTCCGGTAAGTACTC	0.351000													6	191	---	---	---	---	0	0	6.4e-05	0	0
PFKP	5214	broad.mit.edu	37	10	3155654	3155654	+	Missense_Mutation	SNP	G	A	A			TCGA-E8-A2EA-01A-11D-A17V-08	TCGA-E8-A2EA-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5cab1bb-ba14-4072-84f9-e3d3eaa2046f	6c7bc841-870d-438c-9692-1e6660eceb58	g.chr10:3155654G>A	uc001igp.2	+	13	1351	c.1315G>A	c.(1315-1317)GAC>AAC	p.D439N	PFKP_uc001igq.2_Missense_Mutation_p.D431N|PFKP_uc009xhr.2_Missense_Mutation_p.D401N|PFKP_uc009xhs.1_Missense_Mutation_p.D223N|PFKP_uc009xht.2_Missense_Mutation_p.D177N|PFKP_uc009xhu.2_5'UTR	NM_002627	NP_002618	Q01813	K6PP_HUMAN	phosphofructokinase, platelet	439					glycolysis	6-phosphofructokinase complex	6-phosphofructokinase activity|ATP binding|metal ion binding|protein binding			upper_aerodigestive_tract(1)|ovary(1)|lung(1)	3				GBM - Glioblastoma multiforme(1;0.000975)|all cancers(11;0.00351)|Epithelial(11;0.142)		GGGCATTGCCGACGGCCACAG	0.617000													10	21	---	---	---	---	0	0	3.86212e-05	0	0
REEP3	221035	broad.mit.edu	37	10	65379435	65379435	+	Missense_Mutation	SNP	G	C	C			TCGA-E8-A2EA-01A-11D-A17V-08	TCGA-E8-A2EA-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5cab1bb-ba14-4072-84f9-e3d3eaa2046f	6c7bc841-870d-438c-9692-1e6660eceb58	g.chr10:65379435G>C	uc001jmt.2	+	7	769	c.586G>C	c.(586-588)GAC>CAC	p.D196H		NM_001001330	NP_001001330	Q6NUK4	REEP3_HUMAN	receptor accessory protein 3	196						integral to membrane					0	Prostate(12;0.0119)|all_hematologic(501;0.191)					TCCACTGAAAGACGGAGATGA	0.418000													3	15	---	---	---	---	0	0	2.56e-06	0	0
TRIM5	85363	broad.mit.edu	37	11	5686237	5686237	+	Silent	SNP	G	C	C			TCGA-E8-A2EA-01A-11D-A17V-08	TCGA-E8-A2EA-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5cab1bb-ba14-4072-84f9-e3d3eaa2046f	6c7bc841-870d-438c-9692-1e6660eceb58	g.chr11:5686237G>C	uc001mbm.1	-	8	1541	c.1284C>G	c.(1282-1284)CCC>CCG	p.P428P	TRIM78P_uc009yer.2_Intron|TRIM5_uc001mbl.1_RNA|TRIM5_uc001mbn.2_Intron|TRIM5_uc001mbo.2_Intron	NM_033034	NP_149023	Q9C035	TRIM5_HUMAN	tripartite motif protein TRIM5 isoform alpha	428	B30.2/SPRY.				interspecies interaction between organisms|protein trimerization|response to virus	cytoplasm|cytoplasmic mRNA processing body	ligase activity|protein binding|protein homodimerization activity|zinc ion binding			ovary(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0204)|all_neural(188;0.0212)|Lung NSC(207;0.138)|all_lung(207;0.221)		Epithelial(150;7.21e-09)|BRCA - Breast invasive adenocarcinoma(625;0.139)		TCACAGAGAGGGGCACAATGA	0.418000													3	70	---	---	---	---	0	0	6.4e-05	0	0
LRP5	4041	broad.mit.edu	37	11	68201226	68201226	+	Missense_Mutation	SNP	G	C	C			TCGA-E8-A2EA-01A-11D-A17V-08	TCGA-E8-A2EA-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5cab1bb-ba14-4072-84f9-e3d3eaa2046f	6c7bc841-870d-438c-9692-1e6660eceb58	g.chr11:68201226G>C	uc001ont.2	+	18	3995	c.3920G>C	c.(3919-3921)CGG>CCG	p.R1307P	LRP5_uc009ysg.2_Missense_Mutation_p.R717P	NM_002335	NP_002326	O75197	LRP5_HUMAN	low density lipoprotein receptor-related protein	1307	LDL-receptor class A 2.|Extracellular (Potential).				adipose tissue development|bone marrow development|bone morphogenesis|canonical Wnt receptor signaling pathway|cholesterol homeostasis|endocytosis|glucose catabolic process|negative regulation of osteoblast differentiation|negative regulation of protein serine/threonine kinase activity|positive regulation of fat cell differentiation|positive regulation of mesenchymal cell proliferation|positive regulation of mitosis|positive regulation of transcription from RNA polymerase II promoter|regulation of blood pressure|regulation of canonical Wnt receptor signaling pathway|retina morphogenesis in camera-type eye|retinal blood vessel morphogenesis|Wnt receptor signaling pathway involved in dorsal/ventral axis specification	endoplasmic reticulum|integral to membrane|plasma membrane|receptor complex	protein binding|receptor activity			lung(2)|skin(2)|ovary(1)|pancreas(1)|breast(1)	7						CCCTGCGCGCGGGGTCAGTGT	0.711000													3	43	---	---	---	---	0	0	1.23904e-05	0	0
DYRK4	8798	broad.mit.edu	37	12	4708955	4708955	+	Splice_Site	SNP	G	A	A			TCGA-E8-A2EA-01A-11D-A17V-08	TCGA-E8-A2EA-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5cab1bb-ba14-4072-84f9-e3d3eaa2046f	6c7bc841-870d-438c-9692-1e6660eceb58	g.chr12:4708955G>A	uc001qmx.2	+	8	941	c.781_splice	c.e8+1	p.V261_splice	DYRK4_uc009zeh.1_Splice_Site_p.V376_splice|DYRK4_uc001qmy.1_Splice_Site_p.V261_splice	NM_003845	NP_003836	Q9NR20	DYRK4_HUMAN	dual-specificity tyrosine-(Y)-phosphorylation							Golgi apparatus	ATP binding|metal ion binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(2)|skin(1)	3			Colorectal(7;0.103)			CACCAGAAAGGTGAGCCCCAT	0.353000													18	62	---	---	---	---	0	0	3.10358e-05	0	0
CAND1	55832	broad.mit.edu	37	12	67704013	67704013	+	Missense_Mutation	SNP	C	G	G			TCGA-E8-A2EA-01A-11D-A17V-08	TCGA-E8-A2EA-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5cab1bb-ba14-4072-84f9-e3d3eaa2046f	6c7bc841-870d-438c-9692-1e6660eceb58	g.chr12:67704013C>G	uc001stn.2	+	13	3714	c.3277C>G	c.(3277-3279)CTA>GTA	p.L1093V	CAND1_uc001sto.2_Missense_Mutation_p.L603V	NM_018448	NP_060918	Q86VP6	CAND1_HUMAN	TIP120 protein	1093	HEAT 25.				cell differentiation|negative regulation of catalytic activity|protein ubiquitination|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|ubiquitin ligase complex	protein binding			central_nervous_system(1)|skin(1)	2			GBM - Glioblastoma multiforme(1;1.13e-10)|Lung(24;0.000342)|LUSC - Lung squamous cell carcinoma(43;0.196)	GBM - Glioblastoma multiforme(28;0.0279)		GTACACACTTCTAGACAGTTG	0.343000													3	59	---	---	---	---	0	0	6.4e-05	0	0
STOML3	161003	broad.mit.edu	37	13	39541133	39541133	+	Silent	SNP	G	A	A			TCGA-E8-A2EA-01A-11D-A17V-08	TCGA-E8-A2EA-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5cab1bb-ba14-4072-84f9-e3d3eaa2046f	6c7bc841-870d-438c-9692-1e6660eceb58	g.chr13:39541133G>A	uc001uwx.2	-	7	843	c.705C>T	c.(703-705)TCC>TCT	p.S235S	STOML3_uc010tez.1_Silent_p.S226S	NM_145286	NP_660329	Q8TAV4	STML3_HUMAN	stomatin-like 3 isoform 1	235	Cytoplasmic (Potential).					integral to membrane|plasma membrane				ovary(1)	1		Lung NSC(96;1.42e-05)|Prostate(109;0.00851)|Breast(139;0.0199)|Lung SC(185;0.0743)		all cancers(112;2.93e-08)|Epithelial(112;3.64e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.00107)|BRCA - Breast invasive adenocarcinoma(63;0.00349)|GBM - Glioblastoma multiforme(144;0.0137)		CCAGCACCATGGAGGCTGACT	0.468000													9	37	---	---	---	---	0	0	1.12685e-05	0	0
SLC15A1	6564	broad.mit.edu	37	13	99339859	99339859	+	Silent	SNP	C	G	G	rs146831294		TCGA-E8-A2EA-01A-11D-A17V-08	TCGA-E8-A2EA-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5cab1bb-ba14-4072-84f9-e3d3eaa2046f	6c7bc841-870d-438c-9692-1e6660eceb58	g.chr13:99339859C>G	uc001vno.2	-	21	1880	c.1803G>C	c.(1801-1803)ACG>ACC	p.T601T		NM_005073	NP_005064	P46059	S15A1_HUMAN	solute carrier family 15 (oligopeptide	601	Helical; (Potential).				digestion|protein transport	integral to plasma membrane|membrane fraction	peptide:hydrogen symporter activity			ovary(1)	1	all_neural(89;0.101)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)				Cefadroxil(DB01140)|Ceftibuten(DB01415)|Cyclacillin(DB01000)	ATTCCAATCCCGTGACAGAGA	0.423000													4	152	---	---	---	---	0	0	2.56e-06	0	0
POTEG	404785	broad.mit.edu	37	14	19553736	19553736	+	Missense_Mutation	SNP	C	G	G			TCGA-E8-A2EA-01A-11D-A17V-08	TCGA-E8-A2EA-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5cab1bb-ba14-4072-84f9-e3d3eaa2046f	6c7bc841-870d-438c-9692-1e6660eceb58	g.chr14:19553736C>G	uc001vuz.1	+	1	372	c.320C>G	c.(319-321)CCC>CGC	p.P107R	POTEG_uc001vva.1_RNA|POTEG_uc010ahc.1_RNA	NM_001005356	NP_001005356	Q6S5H5	POTEG_HUMAN	POTE ankyrin domain family, member G	107										ovary(1)	1						CACTGCTTCCCCTGCTGCAGG	0.602000													6	451	---	---	---	---	0	0	3.59834e-05	0	0
ADAMTS7	11173	broad.mit.edu	37	15	79069817	79069817	+	Missense_Mutation	SNP	C	G	G			TCGA-E8-A2EA-01A-11D-A17V-08	TCGA-E8-A2EA-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5cab1bb-ba14-4072-84f9-e3d3eaa2046f	6c7bc841-870d-438c-9692-1e6660eceb58	g.chr15:79069817C>G	uc002bej.3	-	9	1647	c.1436G>C	c.(1435-1437)GGG>GCG	p.G479A	ADAMTS7_uc010und.1_Intron|ADAMTS7_uc002bek.1_Missense_Mutation_p.G479A	NM_014272	NP_055087	Q9UKP4	ATS7_HUMAN	ADAM metallopeptidase with thrombospondin type 1	479	Disintegrin.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0						AGAGTAGGCCCCGTACTGGAG	0.652000													3	16	---	---	---	---	0	0	6.4e-05	0	0
C15orf51	196968	broad.mit.edu	37	15	100332133	100332133	+	RNA	SNP	C	T	T			TCGA-E8-A2EA-01A-11D-A17V-08	TCGA-E8-A2EA-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5cab1bb-ba14-4072-84f9-e3d3eaa2046f	6c7bc841-870d-438c-9692-1e6660eceb58	g.chr15:100332133C>T	uc010urx.1	-	5		c.2059G>A			C15orf51_uc010ury.1_RNA	NR_003260				Homo sapiens cDNA FLJ43799 fis, clone TESTI4000288.												0						GGAGCCAATGCCCAGGAGGAG	0.592000													5	41	---	---	---	---	0	0	1.23904e-05	0	0
RSL1D1	26156	broad.mit.edu	37	16	11931906	11931907	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-E8-A2EA-01A-11D-A17V-08	TCGA-E8-A2EA-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5cab1bb-ba14-4072-84f9-e3d3eaa2046f	6c7bc841-870d-438c-9692-1e6660eceb58	g.chr16:11931906_11931907CC>AA	uc002dbp.1	-	9	1283_1284	c.1210_1211GG>TT	c.(1210-1212)GGG>TTG	p.G404L	RSL1D1_uc010buv.1_Missense_Mutation_p.G403L|RSL1D1_uc010uyw.1_Missense_Mutation_p.G184L	NM_015659	NP_056474	O76021	RL1D1_HUMAN	ribosomal L1 domain containing 1	404					regulation of protein localization|translation	large ribosomal subunit|nucleolus	protein binding|RNA binding|structural constituent of ribosome				0						tcttttcttccCACGAGGTGTG	0.183000													11	361	---	---	---	---	0	0	6.4e-05	0	0
CDR2	1039	broad.mit.edu	37	16	22360757	22360757	+	Missense_Mutation	SNP	C	T	T			TCGA-E8-A2EA-01A-11D-A17V-08	TCGA-E8-A2EA-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5cab1bb-ba14-4072-84f9-e3d3eaa2046f	6c7bc841-870d-438c-9692-1e6660eceb58	g.chr16:22360757C>T	uc002dkn.2	-	4	657	c.349G>A	c.(349-351)GAA>AAA	p.E117K		NM_001802	NP_001793	Q01850	CDR2_HUMAN	cerebellar degeneration-related protein 2	117	Potential.					nucleus	protein binding			skin(1)	1				GBM - Glioblastoma multiforme(48;0.0188)		TCAATCGTTTCAGTCAGGCTG	0.512000													10	142	---	---	---	---	0	0	6.40141e-05	0	0
TMEM49	81671	broad.mit.edu	37	17	57917128	57917129	+	Splice_Site	DNP	GG	TT	TT			TCGA-E8-A2EA-01A-11D-A17V-08	TCGA-E8-A2EA-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5cab1bb-ba14-4072-84f9-e3d3eaa2046f	6c7bc841-870d-438c-9692-1e6660eceb58	g.chr17:57917128_57917129GG>TT	uc002ixu.3	+	12	1351	c.1078_splice	c.e12-1	p.G360_splice	TMEM49_uc010wog.1_Splice_Site_p.G168_splice|TMEM49_uc010woh.1_Splice_Site_p.G304_splice|TMEM49_uc010woi.1_Splice_Site_p.G263_splice|TMEM49_uc010woj.1_Splice_Site_p.G226_splice|TMEM49_uc002ixv.2_RNA|MIR21_hsa-mir-21|MI0000077_5'Flank	NM_030938	NP_112200	Q96GC9	VMP1_HUMAN	transmembrane protein 49						autophagy|cell adhesion	endoplasmic reticulum|ER-Golgi intermediate compartment membrane|integral to membrane|plasma membrane|vacuolar membrane					0	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)		Epithelial(12;1.15e-09)|all cancers(12;1.15e-08)			TATTTCTACAGGGAGAAAACTG	0.361000													9	289	---	---	---	---	0	0	6.4e-05	0	0
LOC644669	644669	broad.mit.edu	37	18	15323347	15323347	+	RNA	SNP	T	C	C			TCGA-E8-A2EA-01A-11D-A17V-08	TCGA-E8-A2EA-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5cab1bb-ba14-4072-84f9-e3d3eaa2046f	6c7bc841-870d-438c-9692-1e6660eceb58	g.chr18:15323347T>C	uc002ktd.1	-	3		c.112A>G				NR_027417				Homo sapiens cDNA FLJ40312 fis, clone TESTI2029880.												0						CCAATAAAAGTGGTGTGTGGC	0.303000													3	8	---	---	---	---	0	0	6.4e-05	0	0
ZNF878	729747	broad.mit.edu	37	19	12155667	12155668	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-E8-A2EA-01A-11D-A17V-08	TCGA-E8-A2EA-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5cab1bb-ba14-4072-84f9-e3d3eaa2046f	6c7bc841-870d-438c-9692-1e6660eceb58	g.chr19:12155667_12155668GG>TT	uc002mta.1	-	5	689_690	c.689_690CC>AA	c.(688-690)CCC>CAA	p.P230Q		NM_001080404	NP_001073873	C9JN71	ZN878_HUMAN	zinc finger protein 878	183	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding				0						GAACAGAACTGGGAAAACTGAA	0.396000													10	364	---	---	---	---	0	0	6.4e-05	0	0
SAMD1	90378	broad.mit.edu	37	19	14199308	14199308	+	Missense_Mutation	SNP	A	G	G			TCGA-E8-A2EA-01A-11D-A17V-08	TCGA-E8-A2EA-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5cab1bb-ba14-4072-84f9-e3d3eaa2046f	6c7bc841-870d-438c-9692-1e6660eceb58	g.chr19:14199308A>G	uc010xnl.1	-	7	1538	c.1538T>C	c.(1537-1539)CTG>CCG	p.L513P		NM_138352	NP_612361	Q6SPF0	SAMD1_HUMAN	sterile alpha motif domain containing 1	513	SAM.					cytoplasm|extracellular region					0		Renal(1328;0.00183)|Hepatocellular(1079;0.00826)		GBM - Glioblastoma multiforme(1328;0.000411)|STAD - Stomach adenocarcinoma(1328;0.00644)|Lung(535;0.199)		GTAGATTTTCAGGGCTGGCCC	0.582000													3	67	---	---	---	---	0	0	6.4e-05	0	0
ZNF577	84765	broad.mit.edu	37	19	52376484	52376484	+	Silent	SNP	C	A	A			TCGA-E8-A2EA-01A-11D-A17V-08	TCGA-E8-A2EA-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5cab1bb-ba14-4072-84f9-e3d3eaa2046f	6c7bc841-870d-438c-9692-1e6660eceb58	g.chr19:52376484C>A	uc010yde.1	-	7	1150	c.759G>T	c.(757-759)CGG>CGT	p.R253R	ZNF577_uc010ydd.1_Intron|ZNF577_uc002pxx.3_Silent_p.R194R|ZNF577_uc002pxv.2_Silent_p.R246R|ZNF577_uc002pxw.2_Silent_p.R187R	NM_032679	NP_116068	Q9BSK1	ZN577_HUMAN	zinc finger protein 577 isoform a	253	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		all_neural(266;0.0602)		GBM - Glioblastoma multiforme(134;0.00161)|OV - Ovarian serous cystadenocarcinoma(262;0.019)		GCCGGCACTTCCGGCTGAAGG	0.498000													12	29	---	---	---	---	2.80697e-09	2.78651e-07	6.40141e-05	1	0
ZNF580	51157	broad.mit.edu	37	19	56153901	56153901	+	Silent	SNP	C	G	G			TCGA-E8-A2EA-01A-11D-A17V-08	TCGA-E8-A2EA-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5cab1bb-ba14-4072-84f9-e3d3eaa2046f	6c7bc841-870d-438c-9692-1e6660eceb58	g.chr19:56153901C>G	uc002qlo.2	+	2	197	c.27C>G	c.(25-27)CCC>CCG	p.P9P	ZNF580_uc002qlm.2_Silent_p.P22P|ZNF581_uc002qln.2_Intron|ZNF580_uc002qlp.2_Silent_p.P9P|ZNF580_uc010ygd.1_Silent_p.P9P|ZNF581_uc002qlq.2_5'Flank	NM_207115	NP_996998	Q9UK33	ZN580_HUMAN	zinc finger protein 580	9	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0			BRCA - Breast invasive adenocarcinoma(297;0.18)	GBM - Glioblastoma multiforme(193;0.105)		CGCGGCCACCCCACCCTCGGT	0.617000													3	36	---	---	---	---	0	0	6.4e-05	0	0
GPAT2	150763	broad.mit.edu	37	2	96691942	96691942	+	Missense_Mutation	SNP	A	G	G			TCGA-E8-A2EA-01A-11D-A17V-08	TCGA-E8-A2EA-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5cab1bb-ba14-4072-84f9-e3d3eaa2046f	6c7bc841-870d-438c-9692-1e6660eceb58	g.chr2:96691942A>G	uc002svf.2	-	11	1367	c.1144T>C	c.(1144-1146)TTT>CTT	p.F382L	GPAT2_uc002svd.2_Missense_Mutation_p.F195L|GPAT2_uc002sve.2_Missense_Mutation_p.F184L|GPAT2_uc002svg.2_Missense_Mutation_p.F255L|GPAT2_uc010yuh.1_Missense_Mutation_p.F311L|GPAT2_uc002svh.2_Missense_Mutation_p.F382L	NM_207328	NP_997211	Q6NUI2	GPAT2_HUMAN	glycerol-3-phosphate acyltransferase 2,	382					glycerol-3-phosphate metabolic process|phospholipid biosynthetic process|triglyceride biosynthetic process	integral to membrane|mitochondrial outer membrane	glycerol-3-phosphate O-acyltransferase activity				0						TGCAGGGAAAAGGGCTGAGCT	0.647000													3	65	---	---	---	---	0	0	6.4e-05	0	0
RGPD3	653489	broad.mit.edu	37	2	107049681	107049681	+	Missense_Mutation	SNP	T	C	C			TCGA-E8-A2EA-01A-11D-A17V-08	TCGA-E8-A2EA-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5cab1bb-ba14-4072-84f9-e3d3eaa2046f	6c7bc841-870d-438c-9692-1e6660eceb58	g.chr2:107049681T>C	uc010ywi.1	-	16	2323	c.2266A>G	c.(2266-2268)AAC>GAC	p.N756D		NM_001144013	NP_001137485	A6NKT7	RGPD3_HUMAN	RANBP2-like and GRIP domain containing 3	756					intracellular transport		binding			ovary(1)	1						TCACTATAGTTTTCGAGTTCC	0.373000													5	440	---	---	---	---	0	0	1.23904e-05	0	0
WASH2P	375260	broad.mit.edu	37	2	114355998	114355998	+	Missense_Mutation	SNP	C	G	G			TCGA-E8-A2EA-01A-11D-A17V-08	TCGA-E8-A2EA-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5cab1bb-ba14-4072-84f9-e3d3eaa2046f	6c7bc841-870d-438c-9692-1e6660eceb58	g.chr2:114355998C>G	uc002tkh.2	+	5	674	c.616C>G	c.(616-618)CAC>GAC	p.H206D	WASH2P_uc002tka.2_RNA|WASH2P_uc002tkb.2_RNA|WASH2P_uc002tkd.2_RNA	NM_182905	NP_878908			WAS protein family homolog 1												0						CCAAGGTGGGCACTTGATGTC	0.612000													3	12	---	---	---	---	0	0	1.23904e-05	0	0
MARCH7	64844	broad.mit.edu	37	2	160605230	160605231	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-E8-A2EA-01A-11D-A17V-08	TCGA-E8-A2EA-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5cab1bb-ba14-4072-84f9-e3d3eaa2046f	6c7bc841-870d-438c-9692-1e6660eceb58	g.chr2:160605230_160605231GG>TT	uc002uax.2	+	5	1551_1552	c.1429_1430GG>TT	c.(1429-1431)GGG>TTG	p.G477L	MARCH7_uc010foq.2_Missense_Mutation_p.G477L|MARCH7_uc010zcn.1_Missense_Mutation_p.G421L|MARCH7_uc010for.2_Missense_Mutation_p.G439L|MARCH7_uc002uay.2_RNA	NM_022826	NP_073737	Q9H992	MARH7_HUMAN	axotrophin	477							ligase activity|zinc ion binding				0						AGGAATATCAGGGATTCTTCCT	0.470000													11	282	---	---	---	---	0	0	6.4e-05	0	0
ZNF217	7764	broad.mit.edu	37	20	52193757	52193757	+	Missense_Mutation	SNP	A	C	C			TCGA-E8-A2EA-01A-11D-A17V-08	TCGA-E8-A2EA-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5cab1bb-ba14-4072-84f9-e3d3eaa2046f	6c7bc841-870d-438c-9692-1e6660eceb58	g.chr20:52193757A>C	uc002xwq.3	-	3	1817	c.1546T>G	c.(1546-1548)TAT>GAT	p.Y516D	ZNF217_uc010gij.1_Missense_Mutation_p.Y508D	NM_006526	NP_006517	O75362	ZN217_HUMAN	zinc finger protein 217	516	C2H2-type 7.				negative regulation of transcription, DNA-dependent	histone deacetylase complex	protein binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			skin(2)|ovary(1)|large_intestine(1)|lung(1)|breast(1)	6	all_cancers(1;6.75e-17)|all_epithelial(1;1.76e-18)|Breast(2;3.83e-14)|Lung NSC(4;9.04e-07)|all_lung(4;2.5e-06)|Ovarian(1;0.0398)		BRCA - Breast invasive adenocarcinoma(1;9.88e-17)|Epithelial(1;1.56e-14)|all cancers(1;9.44e-13)|STAD - Stomach adenocarcinoma(23;0.0474)|Colorectal(105;0.198)			TCCAAGTGATACCTCAGAGAT	0.398000													23	78	---	---	---	---	0	0	3.10358e-05	0	0
CSF2RB	1439	broad.mit.edu	37	22	37333582	37333582	+	Missense_Mutation	SNP	C	T	T			TCGA-E8-A2EA-01A-11D-A17V-08	TCGA-E8-A2EA-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5cab1bb-ba14-4072-84f9-e3d3eaa2046f	6c7bc841-870d-438c-9692-1e6660eceb58	g.chr22:37333582C>T	uc003aqa.3	+	14	1949	c.1732C>T	c.(1732-1734)CAC>TAC	p.H578Y	CSF2RB_uc003aqc.3_Missense_Mutation_p.H584Y	NM_000395	NP_000386	P32927	IL3RB_HUMAN	colony stimulating factor 2 receptor, beta	578	Cytoplasmic (Potential).				respiratory gaseous exchange	granulocyte macrophage colony-stimulating factor receptor complex	cytokine receptor activity			skin(2)|pancreas(1)	3					Sargramostim(DB00020)	TGCCGCCTCCCACACACCTGA	0.662000													7	18	---	---	---	---	0	0	5.18039e-06	0	0
TBC1D1	23216	broad.mit.edu	37	4	38016200	38016200	+	Missense_Mutation	SNP	C	G	G			TCGA-E8-A2EA-01A-11D-A17V-08	TCGA-E8-A2EA-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5cab1bb-ba14-4072-84f9-e3d3eaa2046f	6c7bc841-870d-438c-9692-1e6660eceb58	g.chr4:38016200C>G	uc003gtb.2	+	3	831	c.488C>G	c.(487-489)TCC>TGC	p.S163C	TBC1D1_uc011byd.1_Missense_Mutation_p.S163C|TBC1D1_uc010ifd.2_Intron|TBC1D1_uc011byf.1_Missense_Mutation_p.S34C	NM_015173	NP_055988	Q86TI0	TBCD1_HUMAN	TBC1 (tre-2/USP6, BUB2, cdc16) domain family,	163						nucleus	Rab GTPase activator activity			ovary(1)	1						CACTGCCCGTCCGAGTTCGAC	0.622000													28	120	---	---	---	---	0	0	2.90539e-05	0	0
PDS5A	23244	broad.mit.edu	37	4	39910084	39910084	+	Silent	SNP	G	T	T			TCGA-E8-A2EA-01A-11D-A17V-08	TCGA-E8-A2EA-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5cab1bb-ba14-4072-84f9-e3d3eaa2046f	6c7bc841-870d-438c-9692-1e6660eceb58	g.chr4:39910084G>T	uc003guv.3	-	11	1704	c.1164C>A	c.(1162-1164)GCC>GCA	p.A388A	PDS5A_uc010ifo.2_Silent_p.A348A|PDS5A_uc003guw.3_Silent_p.A388A	NM_001100399	NP_001093869	Q29RF7	PDS5A_HUMAN	PDS5, regulator of cohesion maintenance, homolog	388					cell division|mitosis|negative regulation of DNA replication	chromatin|nucleus	identical protein binding				0						GGTCCCTCTTGGCAGCTGTTA	0.358000													96	208	---	---	---	---	3.61922e-38	3.66928e-36	0.000147903	1	0
CHRNA9	55584	broad.mit.edu	37	4	40351272	40351273	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-E8-A2EA-01A-11D-A17V-08	TCGA-E8-A2EA-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5cab1bb-ba14-4072-84f9-e3d3eaa2046f	6c7bc841-870d-438c-9692-1e6660eceb58	g.chr4:40351272_40351273CC>AA	uc003gva.1	+	4	755_756	c.739_740CC>AA	c.(739-741)CCA>AAA	p.P247K		NM_017581	NP_060051	Q9UGM1	ACHA9_HUMAN	cholinergic receptor, nicotinic, alpha 9	247	Helical; (Potential).				elevation of cytosolic calcium ion concentration|synaptic transmission	cell junction|postsynaptic membrane	calcium channel activity|receptor activity			breast(3)|skin(3)|central_nervous_system(1)	7					Nicotine(DB00184)	CCTCCTCATCCCATGCGTCCTC	0.525000													10	442	---	---	---	---	0	0	6.4e-05	0	0
SDHA	6389	broad.mit.edu	37	5	230998	230998	+	Missense_Mutation	SNP	G	C	C	rs1126413		TCGA-E8-A2EA-01A-11D-A17V-08	TCGA-E8-A2EA-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5cab1bb-ba14-4072-84f9-e3d3eaa2046f	6c7bc841-870d-438c-9692-1e6660eceb58	g.chr5:230998G>C	uc003jao.3	+	7	893	c.778G>C	c.(778-780)GGG>CGG	p.G260R	SDHA_uc003jan.2_Missense_Mutation_p.G260R|SDHA_uc011clv.1_Missense_Mutation_p.G260R|SDHA_uc011clw.1_Missense_Mutation_p.G212R|SDHA_uc003jap.3_Missense_Mutation_p.G260R|SDHA_uc003jaq.3_Missense_Mutation_p.G35R|SDHA_uc003jar.3_5'UTR	NM_004168	NP_004159	P31040	DHSA_HUMAN	succinate dehydrogenase complex, subunit A,	260					nervous system development|respiratory electron transport chain|succinate metabolic process|transport|tricarboxylic acid cycle	mitochondrial respiratory chain complex II	electron carrier activity|flavin adenine dinucleotide binding|protein binding|succinate dehydrogenase (ubiquinone) activity				0			Epithelial(17;0.0159)|all cancers(22;0.0236)|OV - Ovarian serous cystadenocarcinoma(19;0.0674)|Lung(60;0.113)		Succinic acid(DB00139)	CAGAGGCTACGGGCGCACCTA	0.602000									Familial_Paragangliomas				3	61	---	---	---	---	0	0	6.4e-05	0	0
Unknown	0	broad.mit.edu	37	7	100551902	100551903	+	RNA	DNP	GG	TT	TT			TCGA-E8-A2EA-01A-11D-A17V-08	TCGA-E8-A2EA-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5cab1bb-ba14-4072-84f9-e3d3eaa2046f	6c7bc841-870d-438c-9692-1e6660eceb58	g.chr7:100551902_100551903GG>TT	uc003uxk.1	+	1		c.1153_1154GG>TT			uc003uxl.1_Missense_Mutation_p.R118I					Homo sapiens MUC3B mRNA for intestinal mucin, partial cds.																		TCTTTCACTAGGGGAAGTACGT	0.436000													20	868	---	---	---	---	0	0	6.4e-05	0	0
MUC17	140453	broad.mit.edu	37	7	100677148	100677148	+	Silent	SNP	G	C	C			TCGA-E8-A2EA-01A-11D-A17V-08	TCGA-E8-A2EA-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5cab1bb-ba14-4072-84f9-e3d3eaa2046f	6c7bc841-870d-438c-9692-1e6660eceb58	g.chr7:100677148G>C	uc003uxp.1	+	3	2504	c.2451G>C	c.(2449-2451)CCG>CCC	p.P817P	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	817	Extracellular (Potential).|Ser-rich.|59 X approximate tandem repeats.|11.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					GCATCACACCGGTGACCAGTC	0.488000													6	509	---	---	---	---	0	0	8.12818e-05	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-E8-A2EA-01A-11D-A17V-08	TCGA-E8-A2EA-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5cab1bb-ba14-4072-84f9-e3d3eaa2046f	6c7bc841-870d-438c-9692-1e6660eceb58	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				13	30	---	---	---	---	0	0	0.00010058	0	0
KCNU1	157855	broad.mit.edu	37	8	36698048	36698048	+	Missense_Mutation	SNP	G	A	A			TCGA-E8-A2EA-01A-11D-A17V-08	TCGA-E8-A2EA-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5cab1bb-ba14-4072-84f9-e3d3eaa2046f	6c7bc841-870d-438c-9692-1e6660eceb58	g.chr8:36698048G>A	uc010lvw.2	+	15	1673	c.1586G>A	c.(1585-1587)CGT>CAT	p.R529H	KCNU1_uc003xjw.2_RNA	NM_001031836	NP_001027006	A8MYU2	KCNU1_HUMAN	potassium channel, subfamily U, member 1	529	Cytoplasmic (Potential).					voltage-gated potassium channel complex	binding|large conductance calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(67;0.0504)|Kidney(114;0.0634)		CTGACCCAACGTCTCTCTGAT	0.383000													8	15	---	---	---	---	0	0	5.18039e-06	0	0
PCDH11X	27328	broad.mit.edu	37	X	91131979	91131979	+	Missense_Mutation	SNP	C	G	G			TCGA-E8-A2EA-01A-11D-A17V-08	TCGA-E8-A2EA-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5cab1bb-ba14-4072-84f9-e3d3eaa2046f	6c7bc841-870d-438c-9692-1e6660eceb58	g.chrX:91131979C>G	uc004efk.1	+	2	1585	c.740C>G	c.(739-741)CCA>CGA	p.P247R	PCDH11X_uc004efl.1_Missense_Mutation_p.P247R|PCDH11X_uc004efo.1_Missense_Mutation_p.P247R|PCDH11X_uc010nmv.1_Missense_Mutation_p.P247R|PCDH11X_uc004efm.1_Missense_Mutation_p.P247R|PCDH11X_uc004efn.1_Missense_Mutation_p.P247R|PCDH11X_uc004efh.1_Missense_Mutation_p.P247R|PCDH11X_uc004efj.1_Missense_Mutation_p.P247R	NM_032968	NP_116750	Q9BZA7	PC11X_HUMAN	protocadherin 11 X-linked isoform c	247	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to plasma membrane	calcium ion binding			large_intestine(2)	2						GACAACCACCCAGTCTTTAAG	0.433000													4	127	---	---	---	---	0	0	2.56e-06	0	0
NXF3	56000	broad.mit.edu	37	X	102333522	102333522	+	Missense_Mutation	SNP	G	C	C			TCGA-E8-A2EA-01A-11D-A17V-08	TCGA-E8-A2EA-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5cab1bb-ba14-4072-84f9-e3d3eaa2046f	6c7bc841-870d-438c-9692-1e6660eceb58	g.chrX:102333522G>C	uc004eju.2	-	17	1488	c.1417C>G	c.(1417-1419)CGG>GGG	p.R473G	NXF3_uc010noi.1_Missense_Mutation_p.P319R	NM_022052	NP_071335	Q9H4D5	NXF3_HUMAN	nuclear RNA export factor 3	473	NTF2.					cytoplasm|nuclear RNA export factor complex	nucleocytoplasmic transporter activity|nucleotide binding|protein binding			ovary(1)|lung(1)|central_nervous_system(1)	3						ATGAAGGTCCGGGTGAAGGCG	0.542000													4	188	---	---	---	---	0	0	3.59834e-05	0	0
PLXNB3	5365	broad.mit.edu	37	X	153039673	153039673	+	Missense_Mutation	SNP	G	C	C			TCGA-E8-A2EA-01A-11D-A17V-08	TCGA-E8-A2EA-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5cab1bb-ba14-4072-84f9-e3d3eaa2046f	6c7bc841-870d-438c-9692-1e6660eceb58	g.chrX:153039673G>C	uc004fii.2	+	21	3726	c.3552G>C	c.(3550-3552)GAG>GAC	p.E1184D	PLXNB3_uc010nuk.2_Missense_Mutation_p.E1207D|PLXNB3_uc011mzd.1_Missense_Mutation_p.E823D|PLXNB3_uc004fij.1_5'Flank|SRPK3_uc004fik.2_5'Flank	NM_005393	NP_005384	Q9ULL4	PLXB3_HUMAN	plexin B3 isoform 1	1184	IPT/TIG 4.|Extracellular (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane	protein binding|receptor activity			lung(1)	1	all_hematologic(71;4.25e-06)|all_lung(58;3.83e-05)|Lung NSC(58;5.54e-05)|Acute lymphoblastic leukemia(192;6.56e-05)					TCAGCAAGGAGGAGGTGCGCG	0.711000													4	13	---	---	---	---	0	0	1.23904e-05	0	0
Unknown	0	broad.mit.edu	37	1	43357226	43357230	+	IGR	DEL	ACTTT	-	-			TCGA-E8-A2EA-01A-11D-A17V-08	TCGA-E8-A2EA-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5cab1bb-ba14-4072-84f9-e3d3eaa2046f	6c7bc841-870d-438c-9692-1e6660eceb58	g.chr1:43357226_43357230delACTTT								ZNF691 (39082 upstream) : SLC2A1 (33816 downstream)																							TCTGGGCAGGACTTTATGATCTTGC	0.449													16	60	---	---	---	---					
GALNT2	2590	broad.mit.edu	37	1	230203102	230203102	+	Frame_Shift_Del	DEL	G	-	-			TCGA-E8-A2EA-01A-11D-A17V-08	TCGA-E8-A2EA-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5cab1bb-ba14-4072-84f9-e3d3eaa2046f	6c7bc841-870d-438c-9692-1e6660eceb58	g.chr1:230203102delG	uc010pwa.1	+	1	147	c.75delG	c.(73-75)TCGfs	p.S25fs	GALNT2_uc010pvy.1_Intron|GALNT2_uc010pvz.1_RNA	NM_004481	NP_004472	Q10471	GALT2_HUMAN	polypeptide N-acetylgalactosaminyltransferase 2	25	Lumenal (Potential).				immunoglobulin biosynthetic process|protein O-linked glycosylation via serine|protein O-linked glycosylation via threonine	extracellular region|Golgi cisterna membrane|integral to Golgi membrane|perinuclear region of cytoplasm	manganese ion binding|polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)	2	Breast(184;0.193)|Ovarian(103;0.249)	all_cancers(173;0.156)|Prostate(94;0.179)				ACATGTACTCGGGGGGCGGCT	0.458													2	4	---	---	---	---					
OR8H2	390151	broad.mit.edu	37	11	55872323	55872323	+	5'Flank	DEL	G	-	-	rs113669153		TCGA-E8-A2EA-01A-11D-A17V-08	TCGA-E8-A2EA-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5cab1bb-ba14-4072-84f9-e3d3eaa2046f	6c7bc841-870d-438c-9692-1e6660eceb58	g.chr11:55872323delG	uc010riy.1	+							NM_001005200	NP_001005200	Q8N162	OR8H2_HUMAN	olfactory receptor, family 8, subfamily H,						sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	Esophageal squamous(21;0.00693)					Gtttttttttgtttgtttttt	0.109										HNSCC(53;0.14)			2	4	---	---	---	---					
COMMD6	170622	broad.mit.edu	37	13	76112127	76112127	+	5'Flank	DEL	A	-	-			TCGA-E8-A2EA-01A-11D-A17V-08	TCGA-E8-A2EA-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5cab1bb-ba14-4072-84f9-e3d3eaa2046f	6c7bc841-870d-438c-9692-1e6660eceb58	g.chr13:76112127delA	uc001vjo.1	-						COMMD6_uc001vjn.1_5'Flank|COMMD6_uc010aet.1_5'Flank|COMMD6_uc001vjp.1_Intron	NM_203495	NP_987091	Q7Z4G1	COMD6_HUMAN	COMM domain containing 6 isoform b							cytoplasm|nucleus	protein binding				0		Breast(118;0.0979)|Prostate(6;0.122)		GBM - Glioblastoma multiforme(99;0.0104)		ACATTGAGCTAAAAGAAAATT	0.383													4	2	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	12670275	12670276	+	IGR	INS	-	A	A			TCGA-E8-A2EA-01A-11D-A17V-08	TCGA-E8-A2EA-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5cab1bb-ba14-4072-84f9-e3d3eaa2046f	6c7bc841-870d-438c-9692-1e6660eceb58	g.chr19:12670275_12670276insA								ZNF709 (7919 upstream) : ZNF490 (16644 downstream)																							actccatctccaaaaaaaaaaa	0.252													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	20442506	20442507	+	IGR	INS	-	T	T			TCGA-E8-A2EA-01A-11D-A17V-08	TCGA-E8-A2EA-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5cab1bb-ba14-4072-84f9-e3d3eaa2046f	6c7bc841-870d-438c-9692-1e6660eceb58	g.chr19:20442506_20442507insT								LOC284441 (72003 upstream) : ZNF826 (8571 downstream)																							GGCAGCTCGtgttttttttttg	0.307													4	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	20	17993502	17993503	+	IGR	DEL	GC	-	-			TCGA-E8-A2EA-01A-11D-A17V-08	TCGA-E8-A2EA-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5cab1bb-ba14-4072-84f9-e3d3eaa2046f	6c7bc841-870d-438c-9692-1e6660eceb58	g.chr20:17993502_17993503delGC								C20orf72 (21743 upstream) : OVOL2 (11293 downstream)																							TTTTGTGTGTGCGTACTTAGCT	0.337													10	213	---	---	---	---					
Unknown	0	broad.mit.edu	37	22	20151841	20151842	+	IGR	INS	-	CAC	CAC	rs10627070		TCGA-E8-A2EA-01A-11D-A17V-08	TCGA-E8-A2EA-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5cab1bb-ba14-4072-84f9-e3d3eaa2046f	6c7bc841-870d-438c-9692-1e6660eceb58	g.chr22:20151841_20151842insCAC								ZDHHC8 (16312 upstream) : LOC150197 (42013 downstream)																							accaccaccatcaccaccacca	0.025													6	1	---	---	---	---					
Unknown	0	broad.mit.edu	37	22	43172335	43172336	+	IGR	INS	-	TTTTTTTTTT	TTTTTTTTTT			TCGA-E8-A2EA-01A-11D-A17V-08	TCGA-E8-A2EA-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5cab1bb-ba14-4072-84f9-e3d3eaa2046f	6c7bc841-870d-438c-9692-1e6660eceb58	g.chr22:43172335_43172336insTTTTTTTTTT								A4GALT (55049 upstream) : ARFGAP3 (20196 downstream)																							AATTACTTGGCTTTTTTTTTTT	0.351													6	12	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	53376246	53376246	+	IGR	DEL	A	-	-			TCGA-E8-A2EA-01A-11D-A17V-08	TCGA-E8-A2EA-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5cab1bb-ba14-4072-84f9-e3d3eaa2046f	6c7bc841-870d-438c-9692-1e6660eceb58	g.chr4:53376246delA								SPATA18 (412789 upstream) : USP46 (80883 downstream)																							gtcaccctcgaaccttgtggc	0.000													6	11	---	---	---	---					
Unknown	0	broad.mit.edu	37	8	49826830	49826831	+	IGR	INS	-	A	A	rs141577976		TCGA-E8-A2EA-01A-11D-A17V-08	TCGA-E8-A2EA-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5cab1bb-ba14-4072-84f9-e3d3eaa2046f	6c7bc841-870d-438c-9692-1e6660eceb58	g.chr8:49826830_49826831insA								EFCAB1 (178960 upstream) : SNAI2 (3408 downstream)																							tggaaaaaggcaaaaaaaAAAa	0.074													2	4	---	---	---	---					
FAM83A	84985	broad.mit.edu	37	8	124219784	124219784	+	Frame_Shift_Del	DEL	G	-	-			TCGA-E8-A2EA-01A-11D-A17V-08	TCGA-E8-A2EA-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5cab1bb-ba14-4072-84f9-e3d3eaa2046f	6c7bc841-870d-438c-9692-1e6660eceb58	g.chr8:124219784delG	uc003ypv.2	+	5	3175	c.1161delG	c.(1159-1161)CCGfs	p.P387fs	FAM83A_uc003ypw.2_Intron|FAM83A_uc003ypy.2_Intron|FAM83A_uc003ypx.2_Frame_Shift_Del_p.P387fs|FAM83A_uc003ypz.2_Intron	NM_032899	NP_116288	Q86UY5	FA83A_HUMAN	hypothetical protein LOC84985 isoform a	387	Pro-rich.									ovary(3)|skin(1)	4	Lung NSC(37;1.55e-09)|Ovarian(258;0.0205)		STAD - Stomach adenocarcinoma(47;0.00527)			ACCTCTCCCCGCGGCCCCACG	0.766													2	4	---	---	---	---					
