Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
NRAS	4893	broad.mit.edu	37	1	115256529	115256529	+	Missense_Mutation	SNP	T	C	C	rs11554290		TCGA-EL-A3T2-01A-11D-A22D-08	TCGA-EL-A3T2-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	2155c3ec-aa6e-41bf-9092-94b89ba47845	38f0d4b5-0437-48dd-81cf-8e1d9d0ec2ea	g.chr1:115256529T>C	uc009wgu.2	-	3	436	c.182A>G	c.(181-183)CAA>CGA	p.Q61R		NM_002524	NP_002515	P01111	RASN_HUMAN	neuroblastoma RAS viral (v-ras) oncogene homolog	61	GTP.		Q -> K (in neuroblastoma cell).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	Golgi membrane|plasma membrane	GTP binding|GTPase activity	p.Q61R(757)|p.Q61K(537)|p.Q61L(147)|p.Q61H(95)|p.Q61P(21)|p.Q61E(9)|p.Q61?(4)|p.Q61Q(3)|p.Q61_E62>HK(1)		haematopoietic_and_lymphoid_tissue(1008)|skin(956)|thyroid(334)|large_intestine(62)|NS(60)|soft_tissue(32)|lung(31)|upper_aerodigestive_tract(25)|urinary_tract(12)|liver(10)|adrenal_gland(9)|autonomic_ganglia(8)|testis(8)|central_nervous_system(8)|prostate(8)|breast(7)|biliary_tract(6)|ovary(6)|stomach(5)|pancreas(5)|endometrium(2)|kidney(2)|cervix(2)|eye(1)	2607	all_epithelial(7;5.11e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		GTACTCTTCTTGTCCAGCTGT	0.458000	Q61L(HEPG2_LIVER)|Q61R(SKMEL2_SKIN)|Q61R(KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(IPC298_SKIN)|Q61P(TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(MHHES1_BONE)|Q61R(HT1197_URINARY_TRACT)|Q61L(MELJUSO_SKIN)|Q61R(ONS76_CENTRAL_NERVOUS_SYSTEM)|Q61R(KU1919_URINARY_TRACT)|Q61L(C3A_LIVER)|Q61R(TT2609C02_THYROID)|Q61R(NCIH2347_LUNG)|Q61L(KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61R(SW1271_LUNG)|Q61L(HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)	50	Mis		melanoma|MM|AML|thyroid				Noonan_syndrome	TSP Lung(23;0.16)|Multiple Myeloma(1;<1E-6)			69	90	---	---	---	---	0	0	0.014410	0	0
THBS3	7059	broad.mit.edu	37	1	155168008	155168008	+	Missense_Mutation	SNP	T	C	C			TCGA-EL-A3T2-01A-11D-A22D-08	TCGA-EL-A3T2-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	2155c3ec-aa6e-41bf-9092-94b89ba47845	38f0d4b5-0437-48dd-81cf-8e1d9d0ec2ea	g.chr1:155168008T>C	uc001fix.2	-	18	2101	c.2078A>G	c.(2077-2079)AAT>AGT	p.N693S	RAG1AP1_uc010pey.1_Intron|THBS3_uc009wqi.2_Missense_Mutation_p.N684S|THBS3_uc001fiz.2_Missense_Mutation_p.N656S|THBS3_uc001fiy.2_Missense_Mutation_p.N222S|THBS3_uc010pfu.1_Missense_Mutation_p.N573S|THBS3_uc010pfv.1_RNA	NM_007112	NP_009043	P49746	TSP3_HUMAN	thrombospondin 3 precursor	693	TSP type-3 8.				cell-matrix adhesion	extracellular region|perinuclear region of cytoplasm	calcium ion binding|heparin binding|structural molecule activity			breast(3)|ovary(2)	5	all_epithelial(22;5.72e-28)|all_lung(78;2.07e-24)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		Epithelial(20;3.72e-10)|all cancers(21;1.19e-09)|BRCA - Breast invasive adenocarcinoma(34;0.000752)|LUSC - Lung squamous cell carcinoma(543;0.193)			ACCAACGCCATTGCCTGGGCA	0.537000													37	72	---	---	---	---	0	0	0.006230	0	0
SBF2	81846	broad.mit.edu	37	11	10064433	10064433	+	Silent	SNP	G	A	A			TCGA-EL-A3T2-01A-11D-A22D-08	TCGA-EL-A3T2-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	2155c3ec-aa6e-41bf-9092-94b89ba47845	38f0d4b5-0437-48dd-81cf-8e1d9d0ec2ea	g.chr11:10064433G>A	uc001mib.2	-	3	375	c.237C>T	c.(235-237)TAC>TAT	p.Y79Y	SBF2_uc001mif.3_5'UTR|SBF2_uc001mij.2_RNA	NM_030962	NP_112224	Q86WG5	MTMRD_HUMAN	SET binding factor 2	79	UDENN.				myelination	cytoplasm|membrane	phosphatase activity|protein binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3				all cancers(16;2.88e-11)|Epithelial(150;3.61e-10)|BRCA - Breast invasive adenocarcinoma(625;0.00887)		GGCATGAGCAGTAATGTCGAT	0.443000													3	138	---	---	---	---	0	0	0.004672	0	0
LOC100288778	100288778	broad.mit.edu	37	12	88651	88651	+	Missense_Mutation	SNP	A	G	G			TCGA-EL-A3T2-01A-11D-A22D-08	TCGA-EL-A3T2-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	2155c3ec-aa6e-41bf-9092-94b89ba47845	38f0d4b5-0437-48dd-81cf-8e1d9d0ec2ea	g.chr12:88651A>G	uc010scy.1	+	6	715	c.160A>G	c.(160-162)AGC>GGC	p.S54G	LOC100288778_uc010scz.1_RNA|LOC100288778_uc010sdb.1_RNA|LOC100288778_uc010sdc.1_RNA|LOC100288778_uc010sdd.1_Missense_Mutation_p.S54G|LOC100288778_uc010sde.1_Missense_Mutation_p.S54G|LOC100288778_uc010sdf.1_Missense_Mutation_p.S54G|LOC100288778_uc010sdg.1_Missense_Mutation_p.S54G|LOC100288778_uc010sdh.1_RNA					SubName: Full=Actin nucleation promoting factor; Flags: Fragment;												0						TGACCTGCCCAGCATTGCCAA	0.587000													4	57	---	---	---	---	0	0	0.006214	0	0
DENND5B	160518	broad.mit.edu	37	12	31600669	31600669	+	Missense_Mutation	SNP	A	G	G			TCGA-EL-A3T2-01A-11D-A22D-08	TCGA-EL-A3T2-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	2155c3ec-aa6e-41bf-9092-94b89ba47845	38f0d4b5-0437-48dd-81cf-8e1d9d0ec2ea	g.chr12:31600669A>G	uc001rki.1	-	6	1850	c.1664T>C	c.(1663-1665)CTG>CCG	p.L555P	DENND5B_uc001rkh.1_Missense_Mutation_p.L590P|DENND5B_uc009zjq.1_Intron|DENND5B_uc001rkj.2_Missense_Mutation_p.L577P	NM_144973	NP_659410	Q6ZUT9	DEN5B_HUMAN	DENN/MADD domain containing 5B	555	dDENN.					integral to membrane				ovary(1)|central_nervous_system(1)	2						AAGAAATGGCAGGTAAGGCTC	0.403000													2	13	---	---	---	---	0	0	0.004672	0	0
KDM2B	84678	broad.mit.edu	37	12	121877692	121877692	+	Missense_Mutation	SNP	G	T	T			TCGA-EL-A3T2-01A-11D-A22D-08	TCGA-EL-A3T2-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	2155c3ec-aa6e-41bf-9092-94b89ba47845	38f0d4b5-0437-48dd-81cf-8e1d9d0ec2ea	g.chr12:121877692G>T	uc001uat.2	-	22	3901	c.3797C>A	c.(3796-3798)ACC>AAC	p.T1266N	KDM2B_uc001uaq.2_Missense_Mutation_p.T706N|KDM2B_uc010szy.1_Missense_Mutation_p.T706N|KDM2B_uc001uar.2_Missense_Mutation_p.T857N|KDM2B_uc001uas.2_Missense_Mutation_p.T1197N|KDM2B_uc001uau.2_Intron|KDM2B_uc001uao.2_Missense_Mutation_p.T514N|KDM2B_uc010szx.1_Missense_Mutation_p.T514N|KDM2B_uc001uap.2_RNA	NM_032590	NP_115979	Q8NHM5	KDM2B_HUMAN	F-box and leucine-rich repeat protein 10 isoform	1266	LRR 5.				embryonic camera-type eye morphogenesis|fourth ventricle development|histone H2A monoubiquitination|initiation of neural tube closure|lateral ventricle development|midbrain development|midbrain-hindbrain boundary morphogenesis|negative regulation of neural precursor cell proliferation|negative regulation of neuron apoptosis|negative regulation of transcription from RNA polymerase II promoter|spermatogenesis|third ventricle development|transcription, DNA-dependent	nucleolus	DNA binding|histone demethylase activity (H3-K36 specific)|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|rRNA binding|zinc ion binding			ovary(1)|skin(1)	2						GGAGTCTCGGGTGGTGGTGCC	0.572000													15	50	---	---	---	---	2.89027e-11	3.10704e-11	0.014323	1	0
MYH6	4624	broad.mit.edu	37	14	23858160	23858160	+	Silent	SNP	G	A	A			TCGA-EL-A3T2-01A-11D-A22D-08	TCGA-EL-A3T2-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	2155c3ec-aa6e-41bf-9092-94b89ba47845	38f0d4b5-0437-48dd-81cf-8e1d9d0ec2ea	g.chr14:23858160G>A	uc001wjv.2	-	29	4150	c.4083C>T	c.(4081-4083)CGC>CGT	p.R1361R	uc010tnn.1_5'Flank|MIR208A_hsa-mir-208a|MI0000251_5'Flank	NM_002471	NP_002462	P13533	MYH6_HUMAN	myosin heavy chain 6	1361	Potential.				adult heart development|atrial cardiac muscle tissue morphogenesis|cardiac muscle fiber development|in utero embryonic development|muscle filament sliding|regulation of ATPase activity|regulation of blood pressure|regulation of heart rate|regulation of the force of heart contraction|sarcomere organization|striated muscle contraction|ventricular cardiac muscle tissue morphogenesis|visceral muscle development	cytosol|focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|protein kinase binding|structural constituent of muscle			pancreas(2)|ovary(1)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00764)|READ - Rectum adenocarcinoma(4;0.0289)|Colorectal(4;0.0441)		TGGACAGGACGCGCTGCAGCT	0.647000													4	88	---	---	---	---	0	0	0.000602	0	0
FLVCR2	55640	broad.mit.edu	37	14	76101253	76101253	+	Missense_Mutation	SNP	G	C	C			TCGA-EL-A3T2-01A-11D-A22D-08	TCGA-EL-A3T2-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	2155c3ec-aa6e-41bf-9092-94b89ba47845	38f0d4b5-0437-48dd-81cf-8e1d9d0ec2ea	g.chr14:76101253G>C	uc001xrs.2	+	5	1397	c.1021G>C	c.(1021-1023)GGG>CGG	p.G341R	FLVCR2_uc010tvd.1_Missense_Mutation_p.G136R	NM_017791	NP_060261	Q9UPI3	FLVC2_HUMAN	feline leukemia virus subgroup C cellular	341					transmembrane transport	integral to membrane|plasma membrane	heme binding|heme transporter activity				0				BRCA - Breast invasive adenocarcinoma(234;0.029)		GTTTCCCCAGGGGGAAGAAGT	0.527000													3	25	---	---	---	---	0	0	0.004672	0	0
KIAA0284	283638	broad.mit.edu	37	14	105353277	105353277	+	Missense_Mutation	SNP	G	A	A			TCGA-EL-A3T2-01A-11D-A22D-08	TCGA-EL-A3T2-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	2155c3ec-aa6e-41bf-9092-94b89ba47845	38f0d4b5-0437-48dd-81cf-8e1d9d0ec2ea	g.chr14:105353277G>A	uc010axb.2	+	12	2925	c.2701G>A	c.(2701-2703)GCA>ACA	p.A901T	INF2_uc010tyi.1_Intron|KIAA0284_uc001ypr.2_Missense_Mutation_p.A831T|KIAA0284_uc001yps.2_Missense_Mutation_p.A807T|KIAA0284_uc001ypt.2_5'Flank	NM_001112726	NP_001106197	Q9Y4F5	K0284_HUMAN	hypothetical protein LOC283638 isoform 1	901						cytoplasm|microtubule				breast(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000472)|OV - Ovarian serous cystadenocarcinoma(23;0.00596)|Epithelial(46;0.0149)|GBM - Glioblastoma multiforme(11;0.116)	Epithelial(152;0.178)		TACCCGGGCCGCACGCATGGA	0.662000													3	65	---	---	---	---	0	0	0.009096	0	0
Unknown	0	broad.mit.edu	37	15	22440536	22440536	+	Missense_Mutation	SNP	A	G	G			TCGA-EL-A3T2-01A-11D-A22D-08	TCGA-EL-A3T2-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	2155c3ec-aa6e-41bf-9092-94b89ba47845	38f0d4b5-0437-48dd-81cf-8e1d9d0ec2ea	g.chr15:22440536A>G	uc001yug.2	-	1	330	c.311T>C	c.(310-312)ATT>ACT	p.I104T						full-length cDNA clone CS0DI014YE21 of Placenta Cot 25-normalized of Homo sapiens (human).																		TGTGCTGTCAATGAGCACAAT	0.498000													21	54	---	---	---	---	0	0	0.003954	0	0
Unknown	0	broad.mit.edu	37	16	70268158	70268158	+	RNA	SNP	A	C	C			TCGA-EL-A3T2-01A-11D-A22D-08	TCGA-EL-A3T2-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	2155c3ec-aa6e-41bf-9092-94b89ba47845	38f0d4b5-0437-48dd-81cf-8e1d9d0ec2ea	g.chr16:70268158A>C	uc010cfp.1	-	3		c.257T>G								Homo sapiens cDNA, FLJ98908.																		TTCTTCATTAAAACAGCTACT	0.333000													2	6	---	---	---	---	0	0	0.004672	0	0
TSR1	55720	broad.mit.edu	37	17	2238870	2238870	+	Missense_Mutation	SNP	G	C	C			TCGA-EL-A3T2-01A-11D-A22D-08	TCGA-EL-A3T2-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	2155c3ec-aa6e-41bf-9092-94b89ba47845	38f0d4b5-0437-48dd-81cf-8e1d9d0ec2ea	g.chr17:2238870G>C	uc002fuj.2	-	3	1313	c.356C>G	c.(355-357)ACC>AGC	p.T119S	SGSM2_uc002fum.3_5'Flank|SGSM2_uc010vqw.1_5'Flank|SGSM2_uc002fun.3_5'Flank	NM_018128	NP_060598	Q2NL82	TSR1_HUMAN	TSR1, 20S rRNA accumulation	119					ribosome assembly	nucleolus	protein binding			ovary(1)	1						AAAGTTCTGGGTGTTTCCCAA	0.483000													3	115	---	---	---	---	0	0	0.000602	0	0
Unknown	0	broad.mit.edu	37	17	45127107	45127107	+	Missense_Mutation	SNP	C	G	G	rs147409399	by1000genomes	TCGA-EL-A3T2-01A-11D-A22D-08	TCGA-EL-A3T2-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	2155c3ec-aa6e-41bf-9092-94b89ba47845	38f0d4b5-0437-48dd-81cf-8e1d9d0ec2ea	g.chr17:45127107C>G	uc010wkj.1	+	2	659	c.305C>G	c.(304-306)ACC>AGC	p.T102S	uc010wkl.1_RNA					SubName: Full=Putative uncharacterized protein LRRC37A3;																		CCTTCGTTCACCCAAGAGCAT	0.592000													3	87	---	---	---	---	0	0	0.004672	0	0
TMX3	54495	broad.mit.edu	37	18	66367682	66367682	+	Missense_Mutation	SNP	T	C	C			TCGA-EL-A3T2-01A-11D-A22D-08	TCGA-EL-A3T2-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	2155c3ec-aa6e-41bf-9092-94b89ba47845	38f0d4b5-0437-48dd-81cf-8e1d9d0ec2ea	g.chr18:66367682T>C	uc002lkf.2	-	6	487	c.352A>G	c.(352-354)ACA>GCA	p.T118A	TMX3_uc010xez.1_5'UTR|TMX3_uc010xfa.1_Intron|TMX3_uc002lkg.3_Missense_Mutation_p.T118A	NM_019022	NP_061895	Q96JJ7	TMX3_HUMAN	thioredoxin domain containing 10 precursor	118	Thioredoxin.|Lumenal (Potential).				cell redox homeostasis|glycerol ether metabolic process	endoplasmic reticulum membrane|integral to membrane	electron carrier activity|protein disulfide isomerase activity|protein disulfide oxidoreductase activity			skin(1)	1						TCATCTTTTGTTCGTGGTCCT	0.244000													10	105	---	---	---	---	0	0	0.002450	0	0
REXO1	57455	broad.mit.edu	37	19	1828209	1828209	+	Silent	SNP	T	C	C			TCGA-EL-A3T2-01A-11D-A22D-08	TCGA-EL-A3T2-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	2155c3ec-aa6e-41bf-9092-94b89ba47845	38f0d4b5-0437-48dd-81cf-8e1d9d0ec2ea	g.chr19:1828209T>C	uc002lua.3	-	2	674	c.579A>G	c.(577-579)GGA>GGG	p.G193G	REXO1_uc010dsr.1_Silent_p.G147G	NM_020695	NP_065746	Q8N1G1	REXO1_HUMAN	transcription elongation factor B polypeptide 3	193	Poly-Gly.					nucleus	exonuclease activity|nucleic acid binding				0		Ovarian(11;1.78e-06)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CGCCACCCCCTCCACCTCTGC	0.706000													2	21	---	---	---	---	0	0	0.004672	0	0
ZNF443	10224	broad.mit.edu	37	19	12542283	12542283	+	Missense_Mutation	SNP	A	G	G			TCGA-EL-A3T2-01A-11D-A22D-08	TCGA-EL-A3T2-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	2155c3ec-aa6e-41bf-9092-94b89ba47845	38f0d4b5-0437-48dd-81cf-8e1d9d0ec2ea	g.chr19:12542283A>G	uc002mtu.2	-	4	901	c.703T>C	c.(703-705)TCT>CCT	p.S235P		NM_005815	NP_005806	Q9Y2A4	ZN443_HUMAN	zinc finger protein 443	235	C2H2-type 4.				induction of apoptosis|regulation of transcription, DNA-dependent|response to stress|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)	1						CTGTAAAAAGAAAAGGCTTTA	0.378000													3	165	---	---	---	---	0	0	0.004672	0	0
NANOS2	339345	broad.mit.edu	37	19	46417736	46417736	+	Silent	SNP	G	A	A			TCGA-EL-A3T2-01A-11D-A22D-08	TCGA-EL-A3T2-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	2155c3ec-aa6e-41bf-9092-94b89ba47845	38f0d4b5-0437-48dd-81cf-8e1d9d0ec2ea	g.chr19:46417736G>A	uc002pdu.2	-	1	301	c.216C>T	c.(214-216)TCC>TCT	p.S72S		NM_001029861	NP_001025032	P60321	NANO2_HUMAN	nanos homolog 2	72	Nanos-type.|C2HC 1.				germ-line stem cell maintenance|mRNA catabolic process|multicellular organismal development|negative regulation of meiosis|regulation of translation|spermatogenesis	cytoplasmic mRNA processing body|perinuclear region of cytoplasm	RNA binding|zinc ion binding				0		Ovarian(192;0.0308)|all_neural(266;0.0476)		OV - Ovarian serous cystadenocarcinoma(262;0.00442)|GBM - Glioblastoma multiforme(486;0.0668)|Epithelial(262;0.231)		AGACGTGGCGGGACTCCCCGT	0.692000													3	82	---	---	---	---	0	0	0.004672	0	0
UBR3	130507	broad.mit.edu	37	2	170843170	170843170	+	Missense_Mutation	SNP	A	T	T			TCGA-EL-A3T2-01A-11D-A22D-08	TCGA-EL-A3T2-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	2155c3ec-aa6e-41bf-9092-94b89ba47845	38f0d4b5-0437-48dd-81cf-8e1d9d0ec2ea	g.chr2:170843170A>T	uc010zdi.1	+	25	3650	c.3650A>T	c.(3649-3651)GAT>GTT	p.D1217V	UBR3_uc002ufr.3_Intron|UBR3_uc010fqa.2_Missense_Mutation_p.D38V|UBR3_uc002uft.3_Missense_Mutation_p.D70V	NM_172070	NP_742067	Q6ZT12	UBR3_HUMAN	E3 ubiquitin-protein ligase UBR3	1217					sensory perception of smell|suckling behavior|ubiquitin-dependent protein catabolic process	integral to membrane	ubiquitin-protein ligase activity|zinc ion binding				0						CCTGAGAATGATATTCCTATG	0.418000													5	54	---	---	---	---	0	0	0.001984	0	0
UNC80	285175	broad.mit.edu	37	2	210658442	210658442	+	Splice_Site	SNP	A	G	G			TCGA-EL-A3T2-01A-11D-A22D-08	TCGA-EL-A3T2-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	2155c3ec-aa6e-41bf-9092-94b89ba47845	38f0d4b5-0437-48dd-81cf-8e1d9d0ec2ea	g.chr2:210658442A>G	uc010zjc.1	+	7	879	c.799_splice	c.e7-2	p.G267_splice	UNC80_uc002vdj.1_Splice_Site_p.G267_splice	NM_032504	NP_115893	Q8N2C7	UNC80_HUMAN	chromosome 2 open reading frame 21 isoform 1							integral to membrane					0						TGCCTCCAAAAGGGACTCCAG	0.428000													3	63	---	---	---	---	0	0	0.004672	0	0
KRTAP8-1	337879	broad.mit.edu	37	21	32185391	32185391	+	Missense_Mutation	SNP	C	T	T			TCGA-EL-A3T2-01A-11D-A22D-08	TCGA-EL-A3T2-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	2155c3ec-aa6e-41bf-9092-94b89ba47845	38f0d4b5-0437-48dd-81cf-8e1d9d0ec2ea	g.chr21:32185391C>T	uc002you.2	-	1	180	c.148G>A	c.(148-150)GGG>AGG	p.G50R		NM_175857	NP_787053	Q8IUC2	KRA81_HUMAN	keratin associated protein 8-1	50	12 X 2 AA repeats of G-[YCGS].					intermediate filament					0						CCGAAAGCCCCACAGCCGTTG	0.567000													8	160	---	---	---	---	0	0	0.006214	0	0
MYO18B	84700	broad.mit.edu	37	22	26219630	26219630	+	Missense_Mutation	SNP	G	A	A			TCGA-EL-A3T2-01A-11D-A22D-08	TCGA-EL-A3T2-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	2155c3ec-aa6e-41bf-9092-94b89ba47845	38f0d4b5-0437-48dd-81cf-8e1d9d0ec2ea	g.chr22:26219630G>A	uc003abz.1	+	13	2930	c.2680G>A	c.(2680-2682)GAG>AAG	p.E894K	MYO18B_uc003aca.1_Missense_Mutation_p.E775K|MYO18B_uc010guy.1_Missense_Mutation_p.E775K|MYO18B_uc010guz.1_Missense_Mutation_p.E775K|MYO18B_uc011aka.1_Missense_Mutation_p.E48K|MYO18B_uc011akb.1_Missense_Mutation_p.E407K	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	894	Myosin head-like.					nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						CCTCGAGGATGAGGAAACCAG	0.562000													4	135	---	---	---	---	0	0	0.009096	0	0
MAGI1	9223	broad.mit.edu	37	3	65365210	65365210	+	Silent	SNP	C	T	T			TCGA-EL-A3T2-01A-11D-A22D-08	TCGA-EL-A3T2-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	2155c3ec-aa6e-41bf-9092-94b89ba47845	38f0d4b5-0437-48dd-81cf-8e1d9d0ec2ea	g.chr3:65365210C>T	uc003dmn.2	-	17	3247	c.2721G>A	c.(2719-2721)GAG>GAA	p.E907E	MAGI1_uc003dmm.2_Silent_p.E935E|MAGI1_uc003dmo.2_Silent_p.E935E|MAGI1_uc003dmp.2_Silent_p.E907E|MAGI1_uc003dmq.1_RNA|MAGI1_uc010hnx.1_Silent_p.E218E	NM_001033057	NP_001028229	Q96QZ7	MAGI1_HUMAN	membrane associated guanylate kinase, WW and PDZ	935					cell adhesion|cell surface receptor linked signaling pathway|protein complex assembly	tight junction	ATP binding|protein C-terminus binding			lung(2)|skin(1)|breast(1)|kidney(1)|pancreas(1)	6		Lung NSC(201;0.0016)		BRCA - Breast invasive adenocarcinoma(55;0.00138)|KIRC - Kidney renal clear cell carcinoma(15;0.0988)|Kidney(15;0.133)		GCGAGGGCACCTCGTTCTCGG	0.622000													79	141	---	---	---	---	0	0	0.014410	0	0
GBE1	2632	broad.mit.edu	37	3	81699052	81699052	+	Silent	SNP	G	A	A			TCGA-EL-A3T2-01A-11D-A22D-08	TCGA-EL-A3T2-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	2155c3ec-aa6e-41bf-9092-94b89ba47845	38f0d4b5-0437-48dd-81cf-8e1d9d0ec2ea	g.chr3:81699052G>A	uc003dqg.2	-	5	733	c.450C>T	c.(448-450)AGC>AGT	p.S150S	GBE1_uc011bgm.1_Silent_p.S109S	NM_000158	NP_000149	Q04446	GLGB_HUMAN	glucan (1,4-alpha-), branching enzyme 1	150					glucose metabolic process|glycogen biosynthetic process	cytosol	1,4-alpha-glucan branching enzyme activity|cation binding|hydrolase activity, hydrolyzing O-glycosyl compounds			ovary(3)	3		Lung NSC(201;0.0117)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0654)|Epithelial(33;0.00305)|LUSC - Lung squamous cell carcinoma(29;0.00646)|BRCA - Breast invasive adenocarcinoma(55;0.00813)|Lung(72;0.0129)|KIRC - Kidney renal clear cell carcinoma(39;0.212)|Kidney(39;0.247)		AGATCTCTCCGCTTTTACTAG	0.368000									Glycogen_Storage_Disease_type_IV				3	39	---	---	---	---	0	0	0.009096	0	0
LOC285501	285501	broad.mit.edu	37	4	178897099	178897099	+	Splice_Site	SNP	T	C	C			TCGA-EL-A3T2-01A-11D-A22D-08	TCGA-EL-A3T2-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	2155c3ec-aa6e-41bf-9092-94b89ba47845	38f0d4b5-0437-48dd-81cf-8e1d9d0ec2ea	g.chr4:178897099T>C	uc010iru.2	+	5		c.766_splice	c.e5+2			NR_028342				Homo sapiens cDNA clone IMAGE:4828874.												0		all_lung(41;6.03e-08)|Lung NSC(41;4.26e-07)|Breast(14;0.00066)|Melanoma(52;0.00168)|Prostate(90;0.0129)|all_hematologic(60;0.0202)|Renal(120;0.0246)|Colorectal(36;0.0508)|Hepatocellular(41;0.236)		all cancers(43;9.24e-25)|Epithelial(43;6.28e-22)|OV - Ovarian serous cystadenocarcinoma(60;5.29e-10)|LUSC - Lung squamous cell carcinoma(1;2.61e-05)|Lung(1;3.22e-05)|GBM - Glioblastoma multiforme(59;0.000185)|Colorectal(24;0.000244)|STAD - Stomach adenocarcinoma(60;0.000777)|COAD - Colon adenocarcinoma(29;0.000884)		AAATGCCAGGTGAGTATGCAA	0.328000													8	152	---	---	---	---	0	0	0.004482	0	0
NIPBL	25836	broad.mit.edu	37	5	37001181	37001181	+	Splice_Site	SNP	G	A	A			TCGA-EL-A3T2-01A-11D-A22D-08	TCGA-EL-A3T2-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	2155c3ec-aa6e-41bf-9092-94b89ba47845	38f0d4b5-0437-48dd-81cf-8e1d9d0ec2ea	g.chr5:37001181G>A	uc003jkl.3	+	14	4163	c.3664_splice	c.e14+1	p.G1222_splice	NIPBL_uc003jkk.3_Splice_Site_p.G1222_splice	NM_133433	NP_597677	Q6KC79	NIPBL_HUMAN	delangin isoform A						brain development|cellular protein localization|cellular response to X-ray|cognition|developmental growth|ear morphogenesis|embryonic arm morphogenesis|embryonic digestive tract morphogenesis|external genitalia morphogenesis|eye morphogenesis|face morphogenesis|gall bladder development|maintenance of mitotic sister chromatid cohesion|metanephros development|negative regulation of transcription from RNA polymerase II promoter|outflow tract morphogenesis|positive regulation of histone deacetylation|regulation of developmental growth|regulation of embryonic development|regulation of hair cycle|response to DNA damage stimulus|sensory perception of sound|uterus morphogenesis	SMC loading complex	chromo shadow domain binding|histone deacetylase binding|protein C-terminus binding|protein N-terminus binding			ovary(4)|lung(2)|large_intestine(1)|breast(1)|kidney(1)	9	all_lung(31;0.000447)|Hepatocellular(1;0.108)		Epithelial(62;0.072)|COAD - Colon adenocarcinoma(61;0.14)|all cancers(62;0.191)|Colorectal(62;0.202)			ACTGCGTTTGGTAAAATCAAC	0.333000													33	45	---	---	---	---	0	0	0.013726	0	0
DNAH8	1769	broad.mit.edu	37	6	38854566	38854566	+	Splice_Site	SNP	G	C	C			TCGA-EL-A3T2-01A-11D-A22D-08	TCGA-EL-A3T2-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	2155c3ec-aa6e-41bf-9092-94b89ba47845	38f0d4b5-0437-48dd-81cf-8e1d9d0ec2ea	g.chr6:38854566G>C	uc003ooe.1	+	55	8209	c.7609_splice	c.e55-1	p.I2537_splice		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						TGAAATTTCAGATAACTAATG	0.338000													7	90	---	---	---	---	0	0	0.006214	0	0
NFE2L3	9603	broad.mit.edu	37	7	26224962	26224962	+	Silent	SNP	T	C	C			TCGA-EL-A3T2-01A-11D-A22D-08	TCGA-EL-A3T2-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	2155c3ec-aa6e-41bf-9092-94b89ba47845	38f0d4b5-0437-48dd-81cf-8e1d9d0ec2ea	g.chr7:26224962T>C	uc003sxq.2	+	4	1916	c.1644T>C	c.(1642-1644)CCT>CCC	p.P548P		NM_004289	NP_004280	Q9Y4A8	NF2L3_HUMAN	nuclear factor erythroid 2-like 3	548					transcription from RNA polymerase II promoter	nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			skin(3)|ovary(1)	4						TGCATATCCCTTTTTCTGTAG	0.418000													4	79	---	---	---	---	0	0	0.009096	0	0
OR6V1	346517	broad.mit.edu	37	7	142750057	142750057	+	Missense_Mutation	SNP	G	C	C			TCGA-EL-A3T2-01A-11D-A22D-08	TCGA-EL-A3T2-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	2155c3ec-aa6e-41bf-9092-94b89ba47845	38f0d4b5-0437-48dd-81cf-8e1d9d0ec2ea	g.chr7:142750057G>C	uc011ksv.1	+	1	620	c.620G>C	c.(619-621)AGC>ACC	p.S207T		NM_001001667	NP_001001667	Q8N148	OR6V1_HUMAN	olfactory receptor, family 6, subfamily V,	207	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	Melanoma(164;0.059)					TTTGTCCTCAGCTCCTTCCTG	0.542000													4	203	---	---	---	---	0	0	0.009096	0	0
WHSC1L1	54904	broad.mit.edu	37	8	38187086	38187086	+	Missense_Mutation	SNP	G	A	A			TCGA-EL-A3T2-01A-11D-A22D-08	TCGA-EL-A3T2-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	2155c3ec-aa6e-41bf-9092-94b89ba47845	38f0d4b5-0437-48dd-81cf-8e1d9d0ec2ea	g.chr8:38187086G>A	uc003xli.2	-	6	1909	c.1391C>T	c.(1390-1392)CCG>CTG	p.P464L	WHSC1L1_uc011lbm.1_Missense_Mutation_p.P464L|WHSC1L1_uc010lwe.2_Missense_Mutation_p.P464L|WHSC1L1_uc003xlj.2_Missense_Mutation_p.P464L	NM_023034	NP_075447	Q9BZ95	NSD3_HUMAN	WHSC1L1 protein isoform long	464					cell differentiation|cell growth|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome	histone-lysine N-methyltransferase activity|zinc ion binding			breast(1)	1	Colorectal(12;0.000442)|Esophageal squamous(3;0.0725)	all_lung(54;0.00787)|Lung NSC(58;0.0295)|Hepatocellular(245;0.065)	Epithelial(3;3.12e-43)|all cancers(3;1.72e-38)|BRCA - Breast invasive adenocarcinoma(5;2.84e-27)|LUSC - Lung squamous cell carcinoma(2;2.79e-25)|Lung(2;5.03e-23)|COAD - Colon adenocarcinoma(9;0.0511)			TTTAACAGGCGGTGGCTCTTC	0.517000			T	NUP98	AML								34	45	---	---	---	---	0	0	0.004878	0	0
LOC442421	442421	broad.mit.edu	37	9	66499659	66499659	+	Missense_Mutation	SNP	A	G	G			TCGA-EL-A3T2-01A-11D-A22D-08	TCGA-EL-A3T2-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	2155c3ec-aa6e-41bf-9092-94b89ba47845	38f0d4b5-0437-48dd-81cf-8e1d9d0ec2ea	g.chr9:66499659A>G	uc004aee.1	+	1	469	c.469A>G	c.(469-471)ACC>GCC	p.T157A	LOC442421_uc004aed.1_RNA					Homo sapiens hypothetical LOC442421, mRNA (cDNA clone IMAGE:40031134).												0						GCTGCGTACCACCAGCCACTG	0.587000													4	18	---	---	---	---	0	0	0.009096	0	0
C9orf103	414328	broad.mit.edu	37	9	86258573	86258573	+	Silent	SNP	T	C	C	rs138577393		TCGA-EL-A3T2-01A-11D-A22D-08	TCGA-EL-A3T2-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	2155c3ec-aa6e-41bf-9092-94b89ba47845	38f0d4b5-0437-48dd-81cf-8e1d9d0ec2ea	g.chr9:86258573T>C	uc004amu.1	+	5	456	c.442T>C	c.(442-444)TTG>CTG	p.L148L	C9orf103_uc004amt.1_Silent_p.L102L|C9orf103_uc010mpv.1_Silent_p.L102L	NM_001001551	NP_001001551	Q5T6J7	GNTK_HUMAN	gluconokinase-like protein	148					carbohydrate metabolic process	cytoplasm	ATP binding|gluconokinase activity|shikimate kinase activity				0						CCCTGAATTATTGCAGTCCCA	0.463000													4	104	---	---	---	---	0	0	0.009096	0	0
FCN2	2220	broad.mit.edu	37	9	137779025	137779025	+	Missense_Mutation	SNP	A	G	G			TCGA-EL-A3T2-01A-11D-A22D-08	TCGA-EL-A3T2-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	2155c3ec-aa6e-41bf-9092-94b89ba47845	38f0d4b5-0437-48dd-81cf-8e1d9d0ec2ea	g.chr9:137779025A>G	uc004cfg.1	+	8	716	c.706A>G	c.(706-708)ACG>GCG	p.T236A	FCN2_uc004cfh.1_Missense_Mutation_p.T198A	NM_004108	NP_004099	Q15485	FCN2_HUMAN	ficolin 2 isoform a precursor	236	Fibrinogen C-terminal.				complement activation, lectin pathway|opsonization|signal transduction	collagen|extracellular space	antigen binding|calcium ion binding|calcium-dependent protein binding|receptor binding|sugar binding			large_intestine(1)	1		Myeloproliferative disorder(178;0.0333)		OV - Ovarian serous cystadenocarcinoma(145;3.58e-08)|Epithelial(140;6.41e-08)|all cancers(34;3.96e-07)		AGATTCCCTGACGTTCCACAA	0.468000													8	113	---	---	---	---	0	0	0.008291	0	0
STAG2	10735	broad.mit.edu	37	X	123211862	123211862	+	Missense_Mutation	SNP	T	G	G			TCGA-EL-A3T2-01A-11D-A22D-08	TCGA-EL-A3T2-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	2155c3ec-aa6e-41bf-9092-94b89ba47845	38f0d4b5-0437-48dd-81cf-8e1d9d0ec2ea	g.chrX:123211862T>G	uc004etz.3	+	26	3068	c.2729T>G	c.(2728-2730)ATA>AGA	p.I910R	STAG2_uc004eua.2_Missense_Mutation_p.I910R|STAG2_uc004eub.2_Missense_Mutation_p.I910R|STAG2_uc004euc.2_Missense_Mutation_p.I910R|STAG2_uc004eud.2_Missense_Mutation_p.I910R|STAG2_uc004eue.2_Missense_Mutation_p.I910R	NM_006603	NP_006594	Q8N3U4	STAG2_HUMAN	stromal antigen 2 isoform b	910					cell division|meiosis|mitotic metaphase/anaphase transition|mitotic prometaphase|negative regulation of DNA endoreduplication|sister chromatid cohesion	chromatin|chromosome, centromeric region|nucleoplasm	protein binding			ovary(4)|skin(1)	5						ACAAGGCAGATAGACAAAATT	0.313000													38	96	---	---	---	---	0	0	0.008740	0	0
BCL10	8915	broad.mit.edu	37	1	85736511	85736511	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EL-A3T2-01A-11D-A22D-08	TCGA-EL-A3T2-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	2155c3ec-aa6e-41bf-9092-94b89ba47845	38f0d4b5-0437-48dd-81cf-8e1d9d0ec2ea	g.chr1:85736511delT	uc001dkz.2	-	3	841	c.136delA	c.(136-138)ATAfs	p.I46fs		NM_003921	NP_003912	O95999	BCL10_HUMAN	B-cell CLL/lymphoma 10	46	CARD.			I->A: Abolishes cell death-inducing capability.	apoptosis|cellular response to mechanical stimulus|innate immune response|interleukin-6 biosynthetic process|lymphotoxin A biosynthetic process|negative regulation of mature B cell apoptosis|neural tube closure|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-8 biosynthetic process|positive regulation of mast cell cytokine production|positive regulation of NF-kappaB transcription factor activity|positive regulation of phosphorylation|positive regulation of protein ubiquitination|positive regulation of transcription, DNA-dependent|protein homooligomerization|response to molecule of bacterial origin|T cell receptor signaling pathway	CBM complex|cytosol|lysosome|membrane raft|nucleus|perinuclear region of cytoplasm	NF-kappaB binding|protease binding|protein C-terminus binding|protein kinase B binding|protein self-association|transcription coactivator activity|ubiquitin binding|ubiquitin protein ligase binding			lung(2)	2				all cancers(265;0.0114)|Epithelial(280;0.0311)		CTACTGAGTATTTTTTTTGCA	0.343			T	IGH@	MALT 								7	111	---	---	---	---					
TRIM33	51592	broad.mit.edu	37	1	114968116	114968118	+	In_Frame_Del	DEL	TGT	-	-			TCGA-EL-A3T2-01A-11D-A22D-08	TCGA-EL-A3T2-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	2155c3ec-aa6e-41bf-9092-94b89ba47845	38f0d4b5-0437-48dd-81cf-8e1d9d0ec2ea	g.chr1:114968116_114968118delTGT	uc001eew.2	-	9	1732_1734	c.1648_1650delACA	c.(1648-1650)ACAdel	p.T550del	TRIM33_uc010owr.1_In_Frame_Del_p.T140del|TRIM33_uc010ows.1_In_Frame_Del_p.T158del|TRIM33_uc001eex.2_In_Frame_Del_p.T550del	NM_015906	NP_056990	Q9UPN9	TRI33_HUMAN	tripartite motif-containing 33 protein isoform	550	Poly-Thr.				negative regulation of BMP signaling pathway|negative regulation of transcription, DNA-dependent|protein ubiquitination|regulation of transforming growth factor beta receptor signaling pathway|transcription, DNA-dependent	nucleus	co-SMAD binding|DNA binding|ligase activity|R-SMAD binding|zinc ion binding			lung(4)|central_nervous_system(3)|large_intestine(1)|breast(1)|skin(1)|ovary(1)	11	all_epithelial(7;0.000132)|all_lung(7;0.00106)|Lung SC(450;0.184)	all_cancers(81;3.03e-08)|all_epithelial(167;3.24e-08)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		GATGCTGTTGTGTTGTTGTTGTT	0.429			T	RET	papillary thyroid								7	366	---	---	---	---					
Unknown	0	broad.mit.edu	37	1	224170954	224170956	+	IGR	DEL	ATC	-	-			TCGA-EL-A3T2-01A-11D-A22D-08	TCGA-EL-A3T2-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	2155c3ec-aa6e-41bf-9092-94b89ba47845	38f0d4b5-0437-48dd-81cf-8e1d9d0ec2ea	g.chr1:224170954_224170956delATC								TP53BP2 (137280 upstream) : FBXO28 (130835 downstream)																							AGGGTATGGGATCATCACCAGAC	0.281													2	4	---	---	---	---					
ADAM6	8755	broad.mit.edu	37	14	106691799	106691801	+	RNA	DEL	ACT	-	-			TCGA-EL-A3T2-01A-11D-A22D-08	TCGA-EL-A3T2-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	2155c3ec-aa6e-41bf-9092-94b89ba47845	38f0d4b5-0437-48dd-81cf-8e1d9d0ec2ea	g.chr14:106691799_106691801delACT	uc010tyt.1	-	754		c.20562_20564delAGT								Parts of antibodies, mostly variable regions.												0						AGTATATGTAACTACTACTACTA	0.517													7	338	---	---	---	---					
ADAMTS18	170692	broad.mit.edu	37	16	77356311	77356311	+	Frame_Shift_Del	DEL	A	-	-			TCGA-EL-A3T2-01A-11D-A22D-08	TCGA-EL-A3T2-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	2155c3ec-aa6e-41bf-9092-94b89ba47845	38f0d4b5-0437-48dd-81cf-8e1d9d0ec2ea	g.chr16:77356311delA	uc002ffc.3	-	14	2504	c.2085delT	c.(2083-2085)TTTfs	p.F695fs	ADAMTS18_uc010chc.1_Frame_Shift_Del_p.F283fs|ADAMTS18_uc002ffe.1_Frame_Shift_Del_p.F391fs	NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	695	Cys-rich.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding	p.A696fs*18(2)		large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						CGGACATTGCAAAAAAAAATT	0.403													7	130	---	---	---	---					
ABCA6	23460	broad.mit.edu	37	17	67125767	67125767	+	Frame_Shift_Del	DEL	A	-	-			TCGA-EL-A3T2-01A-11D-A22D-08	TCGA-EL-A3T2-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	2155c3ec-aa6e-41bf-9092-94b89ba47845	38f0d4b5-0437-48dd-81cf-8e1d9d0ec2ea	g.chr17:67125767delA	uc002jhw.1	-	7	1092	c.917delT	c.(916-918)TTAfs	p.L306fs		NM_080284	NP_525023	Q8N139	ABCA6_HUMAN	ATP-binding cassette, sub-family A, member 6	306	Helical; (Potential).				transport	integral to membrane	ATP binding|ATPase activity			upper_aerodigestive_tract(2)|large_intestine(2)|ovary(2)|skin(1)	7	Breast(10;5.65e-12)					TAAGCCATATAAAAAAAAGAG	0.308													7	106	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	20663034	20663034	+	IGR	DEL	G	-	-			TCGA-EL-A3T2-01A-11D-A22D-08	TCGA-EL-A3T2-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	2155c3ec-aa6e-41bf-9092-94b89ba47845	38f0d4b5-0437-48dd-81cf-8e1d9d0ec2ea	g.chr19:20663034delG								ZNF826 (55272 upstream) : ZNF737 (57765 downstream)																							agcttcttttgtccagctgct	0.000													3	6	---	---	---	---					
IAH1	285148	broad.mit.edu	37	2	9614667	9614668	+	5'Flank	INS	-	GCCCC	GCCCC			TCGA-EL-A3T2-01A-11D-A22D-08	TCGA-EL-A3T2-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	2155c3ec-aa6e-41bf-9092-94b89ba47845	38f0d4b5-0437-48dd-81cf-8e1d9d0ec2ea	g.chr2:9614667_9614668insGCCCC	uc002qzr.2	+						IAH1_uc002qzs.2_5'Flank|IAH1_uc002qzt.2_5'Flank|IAH1_uc010yiz.1_5'Flank	NM_001039613	NP_001034702	Q2TAA2	IAH1_HUMAN	isoamyl acetate-hydrolyzing esterase 1 homolog						lipid catabolic process		hydrolase activity, acting on ester bonds				0	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)					CGTGGCTggcggccccgccccg	0.614													2	4	---	---	---	---					
WNT6	7475	broad.mit.edu	37	2	219724790	219724792	+	In_Frame_Del	DEL	GCT	-	-			TCGA-EL-A3T2-01A-11D-A22D-08	TCGA-EL-A3T2-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	2155c3ec-aa6e-41bf-9092-94b89ba47845	38f0d4b5-0437-48dd-81cf-8e1d9d0ec2ea	g.chr2:219724790_219724792delGCT	uc002vjc.1	+	1	245_247	c.30_32delGCT	c.(28-33)GGGCTG>GGG	p.L17del		NM_006522	NP_006513	Q9Y6F9	WNT6_HUMAN	wingless-type MMTV integration site family,	17					anterior/posterior pattern formation|axis specification|canonical Wnt receptor signaling pathway|cellular response to retinoic acid|cornea development in camera-type eye|neuron differentiation|odontogenesis of dentine-containing tooth|positive regulation of gene expression|positive regulation of tooth mineralization|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	G-protein-coupled receptor binding|signal transducer activity			ovary(2)|skin(1)	3		Renal(207;0.0474)		Epithelial(149;4.53e-07)|all cancers(144;9.3e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CCCGCCTCGGGCTGCTGCTGCTG	0.773													2	4	---	---	---	---					
CACNA1D	776	broad.mit.edu	37	3	53529193	53529195	+	Translation_Start_Site	DEL	GAT	-	-			TCGA-EL-A3T2-01A-11D-A22D-08	TCGA-EL-A3T2-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	2155c3ec-aa6e-41bf-9092-94b89ba47845	38f0d4b5-0437-48dd-81cf-8e1d9d0ec2ea	g.chr3:53529193_53529195delGAT	uc003dgv.3	+	1					CACNA1D_uc003dgu.3_Translation_Start_Site|CACNA1D_uc003dgy.3_Translation_Start_Site	NM_001128840	NP_001122312	Q01668	CAC1D_HUMAN	calcium channel, voltage-dependent, L type,						axon guidance|energy reserve metabolic process|regulation of insulin secretion	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(6)|upper_aerodigestive_tract(2)|liver(1)|central_nervous_system(1)|skin(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.00029)|KIRC - Kidney renal clear cell carcinoma(284;0.0145)|Kidney(284;0.0175)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)	Verapamil(DB00661)	aatgttcgtGgatgatgatgatg	0.246													7	190	---	---	---	---					
