Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
SLC25A33	84275	broad.mit.edu	37	1	9642501	9642501	+	Missense_Mutation	SNP	C	T	T			TCGA-EL-A3T9-01A-21D-A22D-08	TCGA-EL-A3T9-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d692ecd0-2433-426b-9af2-a30c44a80f7c	60ecca33-9f6a-4c77-a862-6f3d723029c9	g.chr1:9642501C>T	uc001apw.2	+	7	1131	c.908C>T	c.(907-909)GCC>GTC	p.A303V	SLC25A33_uc001apx.2_Missense_Mutation_p.A236V	NM_032315	NP_115691	Q9BSK2	S2533_HUMAN	mitochondrial carrier protein MGC4399	303	Solcar 3.|Helical; Name=6; (Potential).				transport	integral to membrane|mitochondrial inner membrane					0	all_lung(157;0.246)	all_epithelial(116;1.16e-18)|all_lung(118;2.44e-05)|Lung NSC(185;4.08e-05)|Renal(390;0.000147)|Breast(348;0.00191)|Colorectal(325;0.00205)|Hepatocellular(190;0.00825)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.01e-08)|COAD - Colon adenocarcinoma(227;1.44e-05)|Kidney(185;0.000262)|KIRC - Kidney renal clear cell carcinoma(229;0.000957)|BRCA - Breast invasive adenocarcinoma(304;0.0019)|STAD - Stomach adenocarcinoma(132;0.00355)|READ - Rectum adenocarcinoma(331;0.0419)		CCAAATACTGCCATTGTGTTG	0.453000													7	20	---	---	---	---	0	0	0.003080	0	0
GJA8	2703	broad.mit.edu	37	1	147380580	147380580	+	Silent	SNP	C	A	A			TCGA-EL-A3T9-01A-21D-A22D-08	TCGA-EL-A3T9-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d692ecd0-2433-426b-9af2-a30c44a80f7c	60ecca33-9f6a-4c77-a862-6f3d723029c9	g.chr1:147380580C>A	uc001epu.1	+	2	561	c.498C>A	c.(496-498)ATC>ATA	p.I166I		NM_005267	NP_005258	P48165	CXA8_HUMAN	connexin 50	166	Helical; (Potential).				cell communication|visual perception	connexon complex|integral to plasma membrane	channel activity			ovary(2)|large_intestine(2)|breast(1)|skin(1)	6	all_hematologic(923;0.0276)					TGGGCTTCATCGTGGGCCACT	0.607000													101	144	---	---	---	---	9.33504e-39	1.02925e-38	0.014410	1	0
RPL13AP6	644511	broad.mit.edu	37	10	112696573	112696573	+	Missense_Mutation	SNP	T	C	C			TCGA-EL-A3T9-01A-21D-A22D-08	TCGA-EL-A3T9-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d692ecd0-2433-426b-9af2-a30c44a80f7c	60ecca33-9f6a-4c77-a862-6f3d723029c9	g.chr10:112696573T>C	uc010qrh.1	-	1	441	c.419A>G	c.(418-420)CAC>CGC	p.H140R	SHOC2_uc001kzl.3_Intron|SHOC2_uc009xxx.2_Intron|SHOC2_uc010qrg.1_Intron	NR_026715				SubName: Full=cDNA FLJ51256, highly similar to 60S ribosomal protein L13a;												0						GTGAGCCAGGTGCCCCAGATA	0.537000													2	15	---	---	---	---	0	0	0.004672	0	0
VWA2	340706	broad.mit.edu	37	10	116045883	116045883	+	Missense_Mutation	SNP	G	A	A			TCGA-EL-A3T9-01A-21D-A22D-08	TCGA-EL-A3T9-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d692ecd0-2433-426b-9af2-a30c44a80f7c	60ecca33-9f6a-4c77-a862-6f3d723029c9	g.chr10:116045883G>A	uc001lbl.1	+	11	1504	c.1183G>A	c.(1183-1185)GTG>ATG	p.V395M	VWA2_uc001lbk.1_Missense_Mutation_p.V395M|VWA2_uc009xyf.1_Missense_Mutation_p.V91M	NM_198496	NP_940898	Q5GFL6	VWA2_HUMAN	von Willebrand factor A domain containing 2	395	VWFA 2.					extracellular region				ovary(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5				Epithelial(162;0.036)|all cancers(201;0.0793)		GCTGGTGGCGGTGCCTGTGGG	0.662000													4	177	---	---	---	---	0	0	0.009096	0	0
LDHAL6A	160287	broad.mit.edu	37	11	18500402	18500402	+	Silent	SNP	G	A	A			TCGA-EL-A3T9-01A-21D-A22D-08	TCGA-EL-A3T9-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d692ecd0-2433-426b-9af2-a30c44a80f7c	60ecca33-9f6a-4c77-a862-6f3d723029c9	g.chr11:18500402G>A	uc001mop.1	+	8	1245	c.984G>A	c.(982-984)AAG>AAA	p.K328K	LDHAL6A_uc001moq.2_Silent_p.K328K	NM_001144071	NP_001137543	Q6ZMR3	LDH6A_HUMAN	lactate dehydrogenase A-like 6A	328					glycolysis	cytoplasm	binding|L-lactate dehydrogenase activity				0					NADH(DB00157)	AAATTCAGAAGGAGCTCAAGC	0.348000													3	178	---	---	---	---	0	0	0.000602	0	0
ETS1	2113	broad.mit.edu	37	11	128332410	128332410	+	Missense_Mutation	SNP	C	T	T			TCGA-EL-A3T9-01A-21D-A22D-08	TCGA-EL-A3T9-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d692ecd0-2433-426b-9af2-a30c44a80f7c	60ecca33-9f6a-4c77-a862-6f3d723029c9	g.chr11:128332410C>T	uc010sbs.1	-	8	1488	c.1172G>A	c.(1171-1173)CGT>CAT	p.R391H	ETS1_uc001qej.2_Missense_Mutation_p.R435H|ETS1_uc009zch.2_Missense_Mutation_p.R175H|ETS1_uc009zcg.2_3'UTR	NM_005238	NP_005229	P14921	ETS1_HUMAN	v-ets erythroblastosis virus E26 oncogene	391	ETS.				cell motility|immune response|induction of apoptosis|negative regulation of cell cycle|negative regulation of cell cycle|negative regulation of cell proliferation|PML body organization|positive regulation of cellular component movement|positive regulation of erythrocyte differentiation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|response to antibiotic|transcription from RNA polymerase II promoter	nucleus|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|sequence-specific DNA binding transcription factor activity|transcription factor binding			lung(4)|central_nervous_system(1)|pleura(1)	6	all_hematologic(175;0.0537)	Lung NSC(97;0.000542)|all_lung(97;0.000665)|Breast(109;0.00765)|all_neural(223;0.0351)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;1.47e-05)|OV - Ovarian serous cystadenocarcinoma(99;0.0174)|LUSC - Lung squamous cell carcinoma(976;0.0815)|Lung(307;0.0833)		GCGTAGGCCACGGCTCAGTTT	0.458000													21	42	---	---	---	---	0	0	0.014323	0	0
LOC642846	642846	broad.mit.edu	37	12	9447432	9447432	+	Missense_Mutation	SNP	C	G	G			TCGA-EL-A3T9-01A-21D-A22D-08	TCGA-EL-A3T9-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d692ecd0-2433-426b-9af2-a30c44a80f7c	60ecca33-9f6a-4c77-a862-6f3d723029c9	g.chr12:9447432C>G	uc010sgq.1	+	5	513	c.422C>G	c.(421-423)ACA>AGA	p.T141R	LOC642846_uc010sgp.1_RNA|LOC642846_uc009zgn.1_5'UTR|LOC642846_uc001qvo.2_5'UTR					SubName: Full=cDNA FLJ60032, highly similar to Probable ATP-dependent RNA helicase DDX11 (EC 3.6.1.-);												0						GAAGAAGAAACAGAGAATCTC	0.632000													3	11	---	---	---	---	0	0	0.004672	0	0
LRP1	4035	broad.mit.edu	37	12	57553705	57553705	+	Silent	SNP	G	A	A			TCGA-EL-A3T9-01A-21D-A22D-08	TCGA-EL-A3T9-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d692ecd0-2433-426b-9af2-a30c44a80f7c	60ecca33-9f6a-4c77-a862-6f3d723029c9	g.chr12:57553705G>A	uc001snd.2	+	12	2362	c.1896G>A	c.(1894-1896)CTG>CTA	p.L632L		NM_002332	NP_002323	Q07954	LRP1_HUMAN	low density lipoprotein-related protein 1	632	LDL-receptor class B 5.|Extracellular (Potential).				aorta morphogenesis|apoptotic cell clearance|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of Wnt receptor signaling pathway|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			ovary(8)|lung(3)|breast(3)|large_intestine(2)|central_nervous_system(2)|skin(2)|pancreas(2)	22				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	TGGCCAGGCTGGAGAAAGCTG	0.567000													3	130	---	---	---	---	0	0	0.009096	0	0
POC1B	282809	broad.mit.edu	37	12	89864264	89864264	+	Silent	SNP	G	A	A			TCGA-EL-A3T9-01A-21D-A22D-08	TCGA-EL-A3T9-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d692ecd0-2433-426b-9af2-a30c44a80f7c	60ecca33-9f6a-4c77-a862-6f3d723029c9	g.chr12:89864264G>A	uc001tbc.2	-	7	789	c.684C>T	c.(682-684)AGC>AGT	p.S228S	POC1B_uc001tba.2_Silent_p.S186S|POC1B_uc001tbb.2_Silent_p.S98S|POC1B_uc010sun.1_RNA|POC1B_uc009zsp.2_RNA|POC1B_uc009zsq.2_Intron	NM_172240	NP_758440	Q8TC44	POC1B_HUMAN	WD repeat domain 51B	228	WD 6.				cell projection organization	centriole|microtubule basal body				ovary(1)	1						TAACTCCACCGCTGTGAACTG	0.388000													3	68	---	---	---	---	0	0	0.009096	0	0
WDR66	144406	broad.mit.edu	37	12	122359381	122359381	+	Missense_Mutation	SNP	C	T	T			TCGA-EL-A3T9-01A-21D-A22D-08	TCGA-EL-A3T9-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d692ecd0-2433-426b-9af2-a30c44a80f7c	60ecca33-9f6a-4c77-a862-6f3d723029c9	g.chr12:122359381C>T	uc009zxk.2	+	2	312	c.170C>T	c.(169-171)ACG>ATG	p.T57M		NM_144668	NP_653269	Q8TBY9	WDR66_HUMAN	WD repeat domain 66	57	Glu-rich.						calcium ion binding			ovary(1)|skin(1)	2	all_neural(191;0.0496)|Medulloblastoma(191;0.0922)			OV - Ovarian serous cystadenocarcinoma(86;0.000155)|Epithelial(86;0.000634)|BRCA - Breast invasive adenocarcinoma(302;0.248)		gagaggaaaacgggcgaggag	0.294000													7	17	---	---	---	---	0	0	0.001984	0	0
GPR135	64582	broad.mit.edu	37	14	59930877	59930877	+	Silent	SNP	G	A	A			TCGA-EL-A3T9-01A-21D-A22D-08	TCGA-EL-A3T9-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d692ecd0-2433-426b-9af2-a30c44a80f7c	60ecca33-9f6a-4c77-a862-6f3d723029c9	g.chr14:59930877G>A	uc010apj.2	-	1	1183	c.1068C>T	c.(1066-1068)GCC>GCT	p.A356A	GPR135_uc001xed.2_RNA	NM_022571	NP_072093	Q8IZ08	GP135_HUMAN	G protein-coupled receptor 135	356	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity				0				OV - Ovarian serous cystadenocarcinoma(108;0.134)		GGGCCTGCCGGGCGGCGGCCA	0.667000													5	16	---	---	---	---	0	0	0.001168	0	0
NTRK3	4916	broad.mit.edu	37	15	88679156	88679156	+	Missense_Mutation	SNP	T	G	G			TCGA-EL-A3T9-01A-21D-A22D-08	TCGA-EL-A3T9-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d692ecd0-2433-426b-9af2-a30c44a80f7c	60ecca33-9f6a-4c77-a862-6f3d723029c9	g.chr15:88679156T>G	uc002bme.1	-	8	1043	c.881A>C	c.(880-882)AAT>ACT	p.N294T	NTRK3_uc002bmh.2_Missense_Mutation_p.N294T|NTRK3_uc002bmf.1_Missense_Mutation_p.N294T|NTRK3_uc010upl.1_Missense_Mutation_p.N196T|NTRK3_uc010bnh.1_Missense_Mutation_p.N294T|NTRK3_uc002bmg.2_Missense_Mutation_p.N294T	NM_001012338	NP_001012338	Q16288	NTRK3_HUMAN	neurotrophic tyrosine kinase, receptor, type 3	294	Ig-like C2-type 1.|Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity		ETV6/NTRK3(234)	soft_tissue(85)|kidney(66)|breast(56)|salivary_gland(26)|lung(22)|large_intestine(6)|ovary(6)|stomach(5)|central_nervous_system(3)|pancreas(3)|haematopoietic_and_lymphoid_tissue(2)|skin(1)	281			BRCA - Breast invasive adenocarcinoma(143;0.211)			AACACTGGCATTGCTCATGCC	0.542000			T	ETV6	congenital fibrosarcoma|Secretory breast 					TSP Lung(13;0.10)			33	63	---	---	---	---	0	0	0.003271	0	0
Unknown	0	broad.mit.edu	37	15	102300091	102300091	+	5'Flank	SNP	A	G	G			TCGA-EL-A3T9-01A-21D-A22D-08	TCGA-EL-A3T9-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d692ecd0-2433-426b-9af2-a30c44a80f7c	60ecca33-9f6a-4c77-a862-6f3d723029c9	g.chr15:102300091A>G	uc002bzk.2	-						uc002bzn.2_5'Flank|uc010uso.1_5'Flank|uc002bzs.2_5'Flank|uc010usv.1_5'Flank|uc002cam.2_RNA|uc010usx.1_5'Flank|uc002cao.2_5'Flank|uc002cap.2_5'Flank|uc002caq.2_5'Flank|uc010usz.1_5'Flank|uc010uta.1_5'Flank|uc002cas.2_5'Flank|uc002cat.1_5'Flank|uc002cau.2_5'Flank|uc010utb.1_5'Flank|uc002cav.2_5'Flank|uc002caw.2_5'Flank|uc002cax.2_5'Flank|uc010utc.1_5'Flank|uc002cay.2_5'Flank|uc002cbb.2_5'Flank|uc002cbc.1_5'Flank|uc002cbd.2_5'Flank|uc002cbe.2_5'Flank|uc002cbg.2_5'Flank|uc002cbh.2_5'Flank|uc002cbi.2_5'Flank|uc002cbk.2_5'Flank|uc002cbl.2_5'Flank|uc010utd.1_5'Flank|uc002cbm.2_5'Flank|uc002cbn.2_5'Flank|uc010ute.1_5'Flank					DQ593627																		GAAGACACTCATGGAGGAGTC	0.582000													2	4	---	---	---	---	0	0	0.004672	0	0
ITGAL	3683	broad.mit.edu	37	16	30510706	30510706	+	Missense_Mutation	SNP	C	T	T			TCGA-EL-A3T9-01A-21D-A22D-08	TCGA-EL-A3T9-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d692ecd0-2433-426b-9af2-a30c44a80f7c	60ecca33-9f6a-4c77-a862-6f3d723029c9	g.chr16:30510706C>T	uc002dyi.3	+	17	2217	c.2041C>T	c.(2041-2043)CGG>TGG	p.R681W	ITGAL_uc002dyj.3_Missense_Mutation_p.R598W|ITGAL_uc010vev.1_Missense_Mutation_p.R77W	NM_002209	NP_002200	P20701	ITAL_HUMAN	integrin alpha L isoform a precursor	681	Extracellular (Potential).				blood coagulation|heterophilic cell-cell adhesion|inflammatory response|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response|T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell	integrin complex	cell adhesion molecule binding|receptor activity			ovary(3)|lung(3)|central_nervous_system(3)|breast(1)	10					Efalizumab(DB00095)	GGATGGCCACCGGACCAGAAG	0.537000													57	185	---	---	---	---	0	0	0.014410	0	0
CAPS	828	broad.mit.edu	37	19	5915243	5915243	+	Silent	SNP	G	A	A			TCGA-EL-A3T9-01A-21D-A22D-08	TCGA-EL-A3T9-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d692ecd0-2433-426b-9af2-a30c44a80f7c	60ecca33-9f6a-4c77-a862-6f3d723029c9	g.chr19:5915243G>A	uc002mdt.2	+	5	630	c.480G>A	c.(478-480)GCG>GCA	p.A160A	CAPS_uc002mdu.2_Silent_p.A133A	NM_004058	NP_004049	Q13938	CAYP1_HUMAN	calcyphosine isoform a	160	4.|EF-hand 4.				intracellular signal transduction	cytoplasm	calcium ion binding				0						TCACACTGGCGGAATTCCAGG	0.667000													18	37	---	---	---	---	0	0	0.008871	0	0
ZNF414	84330	broad.mit.edu	37	19	8576745	8576745	+	Silent	SNP	G	A	A			TCGA-EL-A3T9-01A-21D-A22D-08	TCGA-EL-A3T9-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d692ecd0-2433-426b-9af2-a30c44a80f7c	60ecca33-9f6a-4c77-a862-6f3d723029c9	g.chr19:8576745G>A	uc002mkf.2	-	5	748	c.630C>T	c.(628-630)CCC>CCT	p.P210P	ZNF414_uc002mke.3_Silent_p.P210P|ZNF414_uc010dwf.2_Silent_p.P199P	NM_032370	NP_115746	Q96IQ9	ZN414_HUMAN	zinc finger protein 414 isoform 2	210					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CCAGGGCCGGGGGTGGCGGCG	0.726000													3	5	---	---	---	---	0	0	0.009096	0	0
MEF2B	100271849	broad.mit.edu	37	19	19258532	19258532	+	Missense_Mutation	SNP	G	A	A			TCGA-EL-A3T9-01A-21D-A22D-08	TCGA-EL-A3T9-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d692ecd0-2433-426b-9af2-a30c44a80f7c	60ecca33-9f6a-4c77-a862-6f3d723029c9	g.chr19:19258532G>A	uc002nlm.2	-	4	482	c.368C>T	c.(367-369)CCG>CTG	p.P123L	MEF2B_uc002nln.2_Missense_Mutation_p.P170L|MEF2B_uc002nll.2_Missense_Mutation_p.P123L|LOC729991-MEF2B_uc010xqo.1_Missense_Mutation_p.P123L|LOC729991-MEF2B_uc010xqp.1_Missense_Mutation_p.P123L|LOC729991-MEF2B_uc002nlo.2_Missense_Mutation_p.P123L|LOC729991-MEF2B_uc002nlp.2_Missense_Mutation_p.P123L|MEF2B_uc002nlk.2_Missense_Mutation_p.P126L	NM_001145785	NP_001139257			myocyte enhancer factor 2B isoform a											skin(1)	1			OV - Ovarian serous cystadenocarcinoma(5;0.00011)|Epithelial(12;0.00412)			GGGCAAGGCCGGATCACCCCC	0.627000													3	114	---	---	---	---	0	0	0.009096	0	0
ZNF681	148213	broad.mit.edu	37	19	23927314	23927314	+	Silent	SNP	G	A	A			TCGA-EL-A3T9-01A-21D-A22D-08	TCGA-EL-A3T9-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d692ecd0-2433-426b-9af2-a30c44a80f7c	60ecca33-9f6a-4c77-a862-6f3d723029c9	g.chr19:23927314G>A	uc002nrk.3	-	4	1180	c.1038C>T	c.(1036-1038)GCC>GCT	p.A346A	ZNF681_uc002nrl.3_Silent_p.A277A|ZNF681_uc002nrj.3_Silent_p.A277A	NM_138286	NP_612143	Q96N22	ZN681_HUMAN	zinc finger protein 681	346	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_lung(12;0.11)|Lung NSC(12;0.163)|all_epithelial(12;0.206)				ACTGGTTAAAGGCTTTGCCAC	0.433000													3	73	---	---	---	---	0	0	0.004672	0	0
SLC8A1	6546	broad.mit.edu	37	2	40342768	40342768	+	Missense_Mutation	SNP	G	T	T			TCGA-EL-A3T9-01A-21D-A22D-08	TCGA-EL-A3T9-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d692ecd0-2433-426b-9af2-a30c44a80f7c	60ecca33-9f6a-4c77-a862-6f3d723029c9	g.chr2:40342768G>T	uc002rrx.2	-	10	2571	c.2547C>A	c.(2545-2547)GAC>GAA	p.D849E	uc002rrw.2_Intron|SLC8A1_uc002rry.2_Missense_Mutation_p.D844E|SLC8A1_uc002rrz.2_Missense_Mutation_p.D836E|SLC8A1_uc002rsa.2_Missense_Mutation_p.D813E|SLC8A1_uc002rsd.3_Missense_Mutation_p.D813E	NM_021097	NP_066920	P32418	NAC1_HUMAN	solute carrier family 8 (sodium/calcium	849	Extracellular (Potential).|Alpha-2.				cell communication|muscle contraction|platelet activation	integral to plasma membrane	calcium:sodium antiporter activity|calmodulin binding|heat shock protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4					Alpha-Linolenic Acid(DB00132)|Icosapent(DB00159)	TGGCAAATGTGTCTGCAGAGG	0.507000													16	49	---	---	---	---	2.89027e-11	3.03126e-11	0.014323	1	0
ANKRD20B	729171	broad.mit.edu	37	2	95522772	95522772	+	RNA	SNP	T	C	C			TCGA-EL-A3T9-01A-21D-A22D-08	TCGA-EL-A3T9-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d692ecd0-2433-426b-9af2-a30c44a80f7c	60ecca33-9f6a-4c77-a862-6f3d723029c9	g.chr2:95522772T>C	uc010fhp.2	-	1		c.49A>G				NR_003366				Homo sapiens ankyrin repeat domain 20B (ANKRD20B), non-coding RNA.												0						GCGCTCCACCTCCGCGGCGTC	0.682000													3	57	---	---	---	---	0	0	0.004672	0	0
ITGA6	3655	broad.mit.edu	37	2	173292654	173292654	+	Silent	SNP	C	T	T			TCGA-EL-A3T9-01A-21D-A22D-08	TCGA-EL-A3T9-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d692ecd0-2433-426b-9af2-a30c44a80f7c	60ecca33-9f6a-4c77-a862-6f3d723029c9	g.chr2:173292654C>T	uc002uhp.1	+	1	341	c.138C>T	c.(136-138)TTC>TTT	p.F46F	ITGA6_uc010fqk.1_Intron|ITGA6_uc010zdy.1_Intron|ITGA6_uc002uho.1_Silent_p.F46F	NM_001079818	NP_001073286	P23229	ITA6_HUMAN	integrin alpha chain, alpha 6 isoform a	46	FG-GAP 1.|Extracellular (Potential).				blood coagulation|cell adhesion|hemidesmosome assembly|integrin-mediated signaling pathway|leukocyte migration|negative regulation of apoptosis|positive regulation of apoptosis|positive regulation of phosphorylation|positive regulation of transcription from RNA polymerase II promoter	integrin complex	protein binding|receptor activity			ovary(1)|lung(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0979)			TCTTCGGCTTCTCGCTGGCCA	0.672000													19	39	---	---	---	---	0	0	0.012319	0	0
COL20A1	57642	broad.mit.edu	37	20	61941834	61941834	+	Silent	SNP	C	T	T			TCGA-EL-A3T9-01A-21D-A22D-08	TCGA-EL-A3T9-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d692ecd0-2433-426b-9af2-a30c44a80f7c	60ecca33-9f6a-4c77-a862-6f3d723029c9	g.chr20:61941834C>T	uc011aau.1	+	11	1465	c.1365C>T	c.(1363-1365)GGC>GGT	p.G455G	COL20A1_uc011aav.1_Silent_p.G276G	NM_020882	NP_065933	Q9P218	COKA1_HUMAN	collagen, type XX, alpha 1	455	Fibronectin type-III 2.				cell adhesion	collagen|extracellular space	structural molecule activity			central_nervous_system(1)	1	all_cancers(38;1.39e-10)					GCGGGGTTGGCGAAGGCCTGC	0.687000													3	12	---	---	---	---	0	0	0.004672	0	0
COL6A2	1292	broad.mit.edu	37	21	47532397	47532397	+	Missense_Mutation	SNP	C	T	T			TCGA-EL-A3T9-01A-21D-A22D-08	TCGA-EL-A3T9-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d692ecd0-2433-426b-9af2-a30c44a80f7c	60ecca33-9f6a-4c77-a862-6f3d723029c9	g.chr21:47532397C>T	uc002zia.1	+	3	702	c.620C>T	c.(619-621)ACG>ATG	p.T207M	COL6A2_uc002zhy.1_Missense_Mutation_p.T207M|COL6A2_uc002zhz.1_Missense_Mutation_p.T207M|COL6A2_uc002zib.1_Intron	NM_001849	NP_001840	P12110	CO6A2_HUMAN	alpha 2 type VI collagen isoform 2C2 precursor	207	VWFA 1.|Nonhelical region.				axon guidance|cell-cell adhesion|extracellular matrix organization|protein heterotrimerization	collagen|extracellular space|protein complex	extracellular matrix structural constituent|protein binding, bridging			central_nervous_system(7)|ovary(1)	8	Breast(49;0.245)			Colorectal(79;0.0303)|READ - Rectum adenocarcinoma(84;0.0649)		ATCGCCAGCACGCCGCACGAG	0.662000													13	26	---	---	---	---	0	0	0.013537	0	0
LOC96610	96610	broad.mit.edu	37	22	22453352	22453352	+	RNA	SNP	C	T	T			TCGA-EL-A3T9-01A-21D-A22D-08	TCGA-EL-A3T9-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d692ecd0-2433-426b-9af2-a30c44a80f7c	60ecca33-9f6a-4c77-a862-6f3d723029c9	g.chr22:22453352C>T	uc011aim.1	+	7		c.485C>T								Parts of antibodies, mostly variable regions.												0						CAGGAGCCATCGTTCTCAGTG	0.522000													22	46	---	---	---	---	0	0	0.003954	0	0
SEZ6L	23544	broad.mit.edu	37	22	26695087	26695087	+	Missense_Mutation	SNP	A	C	C			TCGA-EL-A3T9-01A-21D-A22D-08	TCGA-EL-A3T9-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d692ecd0-2433-426b-9af2-a30c44a80f7c	60ecca33-9f6a-4c77-a862-6f3d723029c9	g.chr22:26695087A>C	uc003acb.2	+	5	1456	c.1300A>C	c.(1300-1302)ATC>CTC	p.I434L	SEZ6L_uc003acc.2_Missense_Mutation_p.I434L|SEZ6L_uc011akc.1_Missense_Mutation_p.I434L|SEZ6L_uc003acd.2_Missense_Mutation_p.I434L|SEZ6L_uc011akd.1_Missense_Mutation_p.I434L|SEZ6L_uc003ace.2_Missense_Mutation_p.I434L|SEZ6L_uc003acf.1_Missense_Mutation_p.I207L|SEZ6L_uc010gvc.1_Missense_Mutation_p.I207L	NM_021115	NP_066938	Q9BYH1	SE6L1_HUMAN	seizure related 6 homolog (mouse)-like	434	Sushi 1.|Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane				ovary(4)|central_nervous_system(1)|pancreas(1)	6						GCTGACATGCATCAATGCCTC	0.597000													7	25	---	---	---	---	0	0	0.001984	0	0
ELFN2	114794	broad.mit.edu	37	22	37769205	37769205	+	Silent	SNP	G	A	A	rs148494870	by1000genomes	TCGA-EL-A3T9-01A-21D-A22D-08	TCGA-EL-A3T9-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d692ecd0-2433-426b-9af2-a30c44a80f7c	60ecca33-9f6a-4c77-a862-6f3d723029c9	g.chr22:37769205G>A	uc003asq.3	-	3	3156	c.2370C>T	c.(2368-2370)CAC>CAT	p.H790H		NM_052906	NP_443138	Q5R3F8	LRFN6_HUMAN	leucine rich repeat containing 62	790	Cytoplasmic (Potential).					cell surface|integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2	Melanoma(58;0.0574)					TGCGCAGGGCGTGACCGGCGG	0.627000													44	82	---	---	---	---	0	0	0.014410	0	0
C3orf43	255798	broad.mit.edu	37	3	196235046	196235046	+	Silent	SNP	T	C	C			TCGA-EL-A3T9-01A-21D-A22D-08	TCGA-EL-A3T9-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d692ecd0-2433-426b-9af2-a30c44a80f7c	60ecca33-9f6a-4c77-a862-6f3d723029c9	g.chr3:196235046T>C	uc003fws.2	-	3	514	c.357A>G	c.(355-357)AGA>AGG	p.R119R	C3orf43_uc003fwr.2_Silent_p.R111R	NM_001077657	NP_001071125	Q147U7	CC043_HUMAN	hypothetical protein LOC255798	119						integral to membrane				ovary(1)	1	all_cancers(143;1e-08)|Ovarian(172;0.0634)|Breast(254;0.206)		Epithelial(36;2.13e-23)|all cancers(36;2e-21)|OV - Ovarian serous cystadenocarcinoma(49;1.76e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00298)		CCCATACAACTCTAACGCGCT	0.483000													25	73	---	---	---	---	0	0	0.003954	0	0
ALB	213	broad.mit.edu	37	4	74274412	74274412	+	Missense_Mutation	SNP	A	T	T			TCGA-EL-A3T9-01A-21D-A22D-08	TCGA-EL-A3T9-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d692ecd0-2433-426b-9af2-a30c44a80f7c	60ecca33-9f6a-4c77-a862-6f3d723029c9	g.chr4:74274412A>T	uc003hgs.3	+	4	445	c.372A>T	c.(370-372)GAA>GAT	p.E124D	ALB_uc003hgw.3_Intron|ALB_uc011cbe.1_Intron|ALB_uc003hgt.3_Missense_Mutation_p.E124D|ALB_uc010iii.2_Intron|ALB_uc003hgu.3_Intron|ALB_uc003hgv.3_Intron|ALB_uc011cbf.1_Missense_Mutation_p.E14D|ALB_uc010iij.2_RNA|ALB_uc003hgx.3_5'Flank	NM_000477	NP_000468	P02768	ALBU_HUMAN	albumin preproprotein	124	Albumin 1.				bile acid and bile salt transport|bile acid metabolic process|cellular response to starvation|hemolysis by symbiont of host erythrocytes|lipoprotein metabolic process|maintenance of mitochondrion location|negative regulation of apoptosis|platelet activation|platelet degranulation|sodium-independent organic anion transport|transmembrane transport	extracellular space|platelet alpha granule lumen|protein complex	antioxidant activity|chaperone binding|copper ion binding|DNA binding|drug binding|fatty acid binding|pyridoxal phosphate binding|toxin binding			ovary(3)|skin(3)	6	Breast(15;0.00102)		Epithelial(6;4.8e-05)|OV - Ovarian serous cystadenocarcinoma(6;0.000263)|all cancers(17;0.000472)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)		Acenocoumarol(DB01418)|Acitretin(DB00459)|Alfentanil(DB00802)|Aluminium(DB01370)|Auranofin(DB00995)|Bismuth(DB01402)|Captopril(DB01197)|Carboplatin(DB00958)|Cefalotin(DB00456)|Cefazolin(DB01327)|Cefonicid(DB01328)|Cefoperazone(DB01329)|Chlorpheniramine(DB01114)|Chlorpromazine(DB00477)|Ciprofloxacin(DB00537)|Clonazepam(DB01068)|Cloxacillin(DB01147)|Cytarabine(DB00987)|Dantrolene(DB01219)|Diclofenac(DB00586)|Diflunisal(DB00861)|Digitoxin(DB01396)|Estrone(DB00655)|Ethacrynic acid(DB00903)|Etodolac(DB00749)|Flurbiprofen(DB00712)|Gadobenate Dimeglumine(DB00743)|Gatifloxacin(DB01044)|Gliclazide(DB01120)|Halothane(DB01159)|Human Serum Albumin(DB00062)|Hyaluronidase(DB00070)|Ibuprofen(DB01050)|Insulin-detemir(DB01307)|Insulin-glargine(DB01308)|Iodipamide(DB04711)|Ketoprofen(DB01009)|Levamisole(DB00848)|Levothyroxine(DB00451)|Liothyronine(DB00279)|Mefenamic acid(DB00784)|Mephenytoin(DB00532)|Methotrexate(DB00563)|Nortriptyline(DB00540)|Oxazepam(DB00842)|Paclitaxel(DB01229)|Phenprocoumon(DB00946)|Probenecid(DB01032)|Propofol(DB00818)|Pyridoxine(DB00165)|Salicyclic acid(DB00936)|Saquinavir(DB01232)|Serum albumin(DB00096)|Serum albumin iodonated(DB00064)|Sodium lauryl sulfate(DB00815)|Sucralfate(DB00364)|Sulfamethizole(DB00576)|Sulindac(DB00605)|Suprofen(DB00870)|Testosterone(DB00624)|Xanthophyll(DB00137)	AGAGAAATGAATGCTTCTTGC	0.433000													14	35	---	---	---	---	0	0	0.002450	0	0
KIAA1109	84162	broad.mit.edu	37	4	123185435	123185435	+	Silent	SNP	C	T	T			TCGA-EL-A3T9-01A-21D-A22D-08	TCGA-EL-A3T9-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d692ecd0-2433-426b-9af2-a30c44a80f7c	60ecca33-9f6a-4c77-a862-6f3d723029c9	g.chr4:123185435C>T	uc003ieh.2	+	43	7215	c.7170C>T	c.(7168-7170)CCC>CCT	p.P2390P	KIAA1109_uc003iel.1_Silent_p.P325P|KIAA1109_uc003iek.2_Silent_p.P1009P	NM_015312	NP_056127	Q2LD37	K1109_HUMAN	fragile site-associated protein	2390					regulation of cell growth|regulation of epithelial cell differentiation	integral to membrane|nucleus				ovary(8)|skin(2)|pancreas(1)|central_nervous_system(1)	12						CAACAATACCCTCAGCCTCAG	0.398000													27	64	---	---	---	---	0	0	0.003755	0	0
ITGA2	3673	broad.mit.edu	37	5	52360756	52360756	+	Silent	SNP	G	A	A			TCGA-EL-A3T9-01A-21D-A22D-08	TCGA-EL-A3T9-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d692ecd0-2433-426b-9af2-a30c44a80f7c	60ecca33-9f6a-4c77-a862-6f3d723029c9	g.chr5:52360756G>A	uc003joy.2	+	14	1760	c.1617G>A	c.(1615-1617)CAG>CAA	p.Q539Q	ITGA2_uc011cqa.1_RNA|ITGA2_uc011cqb.1_RNA|ITGA2_uc011cqc.1_Silent_p.Q463Q|ITGA2_uc011cqd.1_RNA|ITGA2_uc011cqe.1_RNA	NM_002203	NP_002194	P17301	ITA2_HUMAN	integrin alpha 2 precursor	539	FG-GAP 5.|Extracellular (Potential).				axon guidance|blood coagulation|cell-matrix adhesion|integrin-mediated signaling pathway|interspecies interaction between organisms|organ morphogenesis	integrin complex	collagen binding|identical protein binding|receptor activity			lung(1)	1		Lung NSC(810;3.11e-05)|Breast(144;0.014)|Prostate(461;0.0181)				TTTTGGGTCAGCACCAATTTC	0.368000													3	104	---	---	---	---	0	0	0.004672	0	0
PCSK1	5122	broad.mit.edu	37	5	95735751	95735751	+	Missense_Mutation	SNP	C	T	T			TCGA-EL-A3T9-01A-21D-A22D-08	TCGA-EL-A3T9-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d692ecd0-2433-426b-9af2-a30c44a80f7c	60ecca33-9f6a-4c77-a862-6f3d723029c9	g.chr5:95735751C>T	uc003kls.1	-	10	1542	c.1336G>A	c.(1336-1338)GCC>ACC	p.A446T	PCSK1_uc010jbi.1_Missense_Mutation_p.A136T	NM_000439	NP_000430	P29120	NEC1_HUMAN	proprotein convertase subtilisin/kexin type 1	446					cell-cell signaling|cellular nitrogen compound metabolic process|energy reserve metabolic process|hormone biosynthetic process|peptide biosynthetic process|peptide hormone processing|regulation of insulin secretion	extracellular space|stored secretory granule|transport vesicle	serine-type endopeptidase activity			ovary(2)	2		all_cancers(142;2.67e-06)|all_epithelial(76;6.92e-09)|all_lung(232;0.00307)|Lung NSC(167;0.00452)|Ovarian(225;0.0112)|Colorectal(57;0.0341)|Breast(839;0.244)		all cancers(79;3.44e-16)	Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	AGAGCTTTGGCATTTAGCAAG	0.493000													47	49	---	---	---	---	0	0	0.014410	0	0
PCDHB12	56124	broad.mit.edu	37	5	140590348	140590348	+	Silent	SNP	G	A	A			TCGA-EL-A3T9-01A-21D-A22D-08	TCGA-EL-A3T9-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d692ecd0-2433-426b-9af2-a30c44a80f7c	60ecca33-9f6a-4c77-a862-6f3d723029c9	g.chr5:140590348G>A	uc003liz.2	+	1	2058	c.1869G>A	c.(1867-1869)GAG>GAA	p.E623E	PCDHB12_uc011dak.1_Silent_p.E286E	NM_018932	NP_061755	Q9Y5F1	PCDBC_HUMAN	protocadherin beta 12 precursor	623	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ACAATGGCGAGGTGCGCACCG	0.701000													4	157	---	---	---	---	0	0	0.009096	0	0
HSPA1L	3305	broad.mit.edu	37	6	31779208	31779208	+	Missense_Mutation	SNP	G	A	A			TCGA-EL-A3T9-01A-21D-A22D-08	TCGA-EL-A3T9-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d692ecd0-2433-426b-9af2-a30c44a80f7c	60ecca33-9f6a-4c77-a862-6f3d723029c9	g.chr6:31779208G>A	uc003nxh.2	-	2	725	c.542C>T	c.(541-543)GCT>GTT	p.A181V	HSPA1L_uc010jte.2_Missense_Mutation_p.A181V	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	181					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						GGCAATGGCAGCAGCCGTGGG	0.458000													3	72	---	---	---	---	0	0	0.001168	0	0
KIAA0415	9907	broad.mit.edu	37	7	4830986	4830986	+	Silent	SNP	G	T	T			TCGA-EL-A3T9-01A-21D-A22D-08	TCGA-EL-A3T9-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d692ecd0-2433-426b-9af2-a30c44a80f7c	60ecca33-9f6a-4c77-a862-6f3d723029c9	g.chr7:4830986G>T	uc003sne.2	+	17	2477	c.2394G>T	c.(2392-2394)GTG>GTT	p.V798V	KIAA0415_uc010ksp.2_RNA|KIAA0415_uc003snf.2_Silent_p.V275V	NM_014855	NP_055670	O43299	K0415_HUMAN	hypothetical protein LOC9907	798					cell death|double-strand break repair via homologous recombination	cytoplasm|nucleus	protein binding			central_nervous_system(1)	1		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.091)|OV - Ovarian serous cystadenocarcinoma(56;8.35e-15)		GCCGGCTGGTGGAGAGGGAGG	0.667000													18	28	---	---	---	---	1.02788e-11	1.10497e-11	0.004990	1	0
FLNC	2318	broad.mit.edu	37	7	128494189	128494189	+	Missense_Mutation	SNP	G	A	A			TCGA-EL-A3T9-01A-21D-A22D-08	TCGA-EL-A3T9-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d692ecd0-2433-426b-9af2-a30c44a80f7c	60ecca33-9f6a-4c77-a862-6f3d723029c9	g.chr7:128494189G>A	uc003vnz.3	+	40	6855	c.6646G>A	c.(6646-6648)GAC>AAC	p.D2216N	FLNC_uc003voa.3_Missense_Mutation_p.D2183N	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	2216	Intradomain insert.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						GGTCGGCGGGGACCCCTTCCC	0.697000													30	38	---	---	---	---	0	0	0.003271	0	0
GPT	2875	broad.mit.edu	37	8	145730778	145730778	+	Silent	SNP	G	A	A			TCGA-EL-A3T9-01A-21D-A22D-08	TCGA-EL-A3T9-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d692ecd0-2433-426b-9af2-a30c44a80f7c	60ecca33-9f6a-4c77-a862-6f3d723029c9	g.chr8:145730778G>A	uc011lli.1	+	6	802	c.645G>A	c.(643-645)GCG>GCA	p.A215A	GPT_uc011llj.1_Silent_p.A215A|GPT_uc003zdh.3_Silent_p.A215A	NM_005309	NP_005300	P24298	ALAT1_HUMAN	glutamic pyruvate transaminase	215					gluconeogenesis	cytosol	1-aminocyclopropane-1-carboxylate synthase activity|L-alanine:2-oxoglutarate aminotransferase activity|pyridoxal phosphate binding			ovary(1)|central_nervous_system(1)	2	all_cancers(97;5.56e-11)|all_epithelial(106;3.54e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.48e-41)|Epithelial(56;1.85e-40)|all cancers(56;3.59e-35)|BRCA - Breast invasive adenocarcinoma(115;0.0483)|Colorectal(110;0.055)		L-Alanine(DB00160)|L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)	GTGCCTGGGCGCTGGACGTGG	0.672000													3	39	---	---	---	---	0	0	0.009096	0	0
STOML2	30968	broad.mit.edu	37	9	35102741	35102741	+	Missense_Mutation	SNP	G	A	A			TCGA-EL-A3T9-01A-21D-A22D-08	TCGA-EL-A3T9-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d692ecd0-2433-426b-9af2-a30c44a80f7c	60ecca33-9f6a-4c77-a862-6f3d723029c9	g.chr9:35102741G>A	uc003zwi.2	-	2	188	c.125C>T	c.(124-126)CCG>CTG	p.P42L	STOML2_uc003zwh.2_5'UTR|STOML2_uc003zwj.2_5'UTR|STOML2_uc011lou.1_Missense_Mutation_p.P42L|STOML2_uc003zwk.2_5'UTR	NM_013442	NP_038470	Q9UJZ1	STML2_HUMAN	stomatin (EPB72)-like 2	42						cytoskeleton	receptor binding				0			LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)			CTCCTGCTGCGGCACGAACAG	0.642000													52	111	---	---	---	---	0	0	0.014410	0	0
EFNB1	1947	broad.mit.edu	37	X	68060182	68060182	+	Silent	SNP	G	A	A			TCGA-EL-A3T9-01A-21D-A22D-08	TCGA-EL-A3T9-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d692ecd0-2433-426b-9af2-a30c44a80f7c	60ecca33-9f6a-4c77-a862-6f3d723029c9	g.chrX:68060182G>A	uc004dxd.3	+	5	1506	c.726G>A	c.(724-726)GCG>GCA	p.A242A	EFNB1_uc004dxe.2_Silent_p.A242A	NM_004429	NP_004420	P98172	EFNB1_HUMAN	ephrin-B1 precursor	242	Helical; (Potential).				cell adhesion|cell-cell signaling	integral to plasma membrane|soluble fraction|synapse	ephrin receptor binding				0						CATTGTTCGCGGCTGTCGGTG	0.587000													9	36	---	---	---	---	0	0	0.010729	0	0
Unknown	0	broad.mit.edu	37	1	120429341	120429342	+	IGR	DEL	AC	-	-			TCGA-EL-A3T9-01A-21D-A22D-08	TCGA-EL-A3T9-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d692ecd0-2433-426b-9af2-a30c44a80f7c	60ecca33-9f6a-4c77-a862-6f3d723029c9	g.chr1:120429341_120429342delAC								NBPF7 (41562 upstream) : ADAM30 (6815 downstream)																							TCTCTCTcatacacacacacac	0.277													2	4	---	---	---	---					
PCP4L1	654790	broad.mit.edu	37	1	161254154	161254156	+	In_Frame_Del	DEL	GGA	-	-			TCGA-EL-A3T9-01A-21D-A22D-08	TCGA-EL-A3T9-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d692ecd0-2433-426b-9af2-a30c44a80f7c	60ecca33-9f6a-4c77-a862-6f3d723029c9	g.chr1:161254154_161254156delGGA	uc001gad.2	+	3	338_340	c.90_92delGGA	c.(88-93)GCGGAG>GCG	p.E35del		NM_001102566	NP_001096036	A6NKN8	PC4L1_HUMAN	Purkinje cell protein 4 like 1	35											0	all_cancers(52;4.16e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00376)			TCAAGAAGGCGGAGGAGGAGGAG	0.488													7	275	---	---	---	---					
Unknown	0	broad.mit.edu	37	15	85815438	85815439	+	IGR	INS	-	C	C			TCGA-EL-A3T9-01A-21D-A22D-08	TCGA-EL-A3T9-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d692ecd0-2433-426b-9af2-a30c44a80f7c	60ecca33-9f6a-4c77-a862-6f3d723029c9	g.chr15:85815438_85815439insC								PDE8A (133068 upstream) : AKAP13 (108432 downstream)																							GGTCCCTCTGTCCCATTGCCCA	0.525													3	4	---	---	---	---					
CCDC155	147872	broad.mit.edu	37	19	49920666	49920668	+	In_Frame_Del	DEL	CTG	-	-			TCGA-EL-A3T9-01A-21D-A22D-08	TCGA-EL-A3T9-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d692ecd0-2433-426b-9af2-a30c44a80f7c	60ecca33-9f6a-4c77-a862-6f3d723029c9	g.chr19:49920666_49920668delCTG	uc002pnm.1	+	20	1762_1764	c.1588_1590delCTG	c.(1588-1590)CTGdel	p.L536del	CCDC155_uc010emx.1_In_Frame_Del_p.L507del	NM_144688	NP_653289	Q8N6L0	CC155_HUMAN	coiled-coil domain containing 155	536	Helical; (Potential).|Poly-Leu.					integral to membrane	calcium ion binding			ovary(1)|central_nervous_system(1)	2						TGTCCTGGGCctgctgctgctgc	0.586													3	5	---	---	---	---					
KCNK12	56660	broad.mit.edu	37	2	47797086	47797086	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EL-A3T9-01A-21D-A22D-08	TCGA-EL-A3T9-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d692ecd0-2433-426b-9af2-a30c44a80f7c	60ecca33-9f6a-4c77-a862-6f3d723029c9	g.chr2:47797086delT	uc002rwb.2	-	1	385	c.385delA	c.(385-387)ACCfs	p.T129fs	MSH2_uc002rvz.2_Intron	NM_022055	NP_071338	Q9HB15	KCNKC_HUMAN	potassium channel, subfamily K, member 12	129						integral to membrane	potassium channel activity|voltage-gated ion channel activity			ovary(1)	1		all_hematologic(82;0.0495)|Acute lymphoblastic leukemia(82;0.175)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)			TCACCTATGGTTGACACCACG	0.721													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	108520611	108520611	+	IGR	DEL	T	-	-			TCGA-EL-A3T9-01A-21D-A22D-08	TCGA-EL-A3T9-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d692ecd0-2433-426b-9af2-a30c44a80f7c	60ecca33-9f6a-4c77-a862-6f3d723029c9	g.chr2:108520611delT								RGPD4 (11612 upstream) : SLC5A7 (82384 downstream)																							Attttttgtcttttttttttt	0.333													4	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	133020743	133020744	+	IGR	INS	-	T	T	rs137914230		TCGA-EL-A3T9-01A-21D-A22D-08	TCGA-EL-A3T9-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d692ecd0-2433-426b-9af2-a30c44a80f7c	60ecca33-9f6a-4c77-a862-6f3d723029c9	g.chr2:133020743_133020744insT								NCRNA00164 (5201 upstream) : GPR39 (153403 downstream)																							TTAGATAGCTCTTTATTGTCAT	0.327													5	1	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	242820122	242820123	+	IGR	INS	-	C	C			TCGA-EL-A3T9-01A-21D-A22D-08	TCGA-EL-A3T9-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d692ecd0-2433-426b-9af2-a30c44a80f7c	60ecca33-9f6a-4c77-a862-6f3d723029c9	g.chr2:242820122_242820123insC								C2orf85 (4640 upstream) : LOC728323 (210721 downstream)																							tctccTGGCCGCCCCCCAAccc	0.054													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	20	62027278	62027279	+	5'Flank	INS	-	T	T	rs148732981	by1000genomes	TCGA-EL-A3T9-01A-21D-A22D-08	TCGA-EL-A3T9-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d692ecd0-2433-426b-9af2-a30c44a80f7c	60ecca33-9f6a-4c77-a862-6f3d723029c9	g.chr20:62027278_62027279insT	uc002yew.1	-											Homo sapiens cDNA FLJ31705 fis, clone NT2RI2006183, weakly similar to Proline-rich protein M14 precursor.																		CCCAGTGGAGGGGAGGGGCTGC	0.708													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	21	33157638	33157640	+	IGR	DEL	CAT	-	-	rs112554433	by1000genomes	TCGA-EL-A3T9-01A-21D-A22D-08	TCGA-EL-A3T9-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d692ecd0-2433-426b-9af2-a30c44a80f7c	60ecca33-9f6a-4c77-a862-6f3d723029c9	g.chr21:33157638_33157640delCAT								SFRS15 (53207 upstream) : HUNK (87988 downstream)																							ccaccaccaccatcaccatcacc	0.000													2	4	---	---	---	---					
KDM3B	51780	broad.mit.edu	37	5	137727661	137727661	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EL-A3T9-01A-21D-A22D-08	TCGA-EL-A3T9-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d692ecd0-2433-426b-9af2-a30c44a80f7c	60ecca33-9f6a-4c77-a862-6f3d723029c9	g.chr5:137727661delG	uc003lcy.1	+	8	2540	c.2340delG	c.(2338-2340)CCGfs	p.P780fs	KDM3B_uc010jew.1_Frame_Shift_Del_p.P436fs|KDM3B_uc011cys.1_Intron	NM_016604	NP_057688	Q7LBC6	KDM3B_HUMAN	jumonji domain containing 1B	780					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			ovary(3)|upper_aerodigestive_tract(2)|lung(2)|kidney(2)|central_nervous_system(1)|skin(1)	11						TGTCCTCCCCGGCAGATTTTT	0.532													193	270	---	---	---	---					
