Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
CROCCL1	84809	broad.mit.edu	37	1	16973519	16973519	+	5'Flank	SNP	G	A	A	rs2501762		TCGA-EM-A2CP-01A-11D-A17V-08	TCGA-EM-A2CP-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8cd6882-be27-4742-bc63-3227d31bf704	e6101d92-5616-476e-8b38-8b6847ae3d48	g.chr1:16973519G>A	uc001azg.1	-						CROCCL1_uc001azi.1_5'Flank|MST1P2_uc009vow.2_RNA|MST1P2_uc010ocg.1_RNA|MST1P2_uc010och.1_RNA|MST1P2_uc010oci.1_RNA|MST1P2_uc001azk.2_RNA|MST1P2_uc001azl.3_RNA|MST1P2_uc009vox.2_5'Flank|MST1P2_uc001azm.3_5'Flank					Homo sapiens mRNA for FLJ00313 protein.												0						AACTTCTGCCGTAACCCTGAT	0.632000													10	42	---	---	---	---	0	0	0.000566183	0	0
HRNR	388697	broad.mit.edu	37	1	152188314	152188315	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-EM-A2CP-01A-11D-A17V-08	TCGA-EM-A2CP-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8cd6882-be27-4742-bc63-3227d31bf704	e6101d92-5616-476e-8b38-8b6847ae3d48	g.chr1:152188314_152188315GG>TT	uc001ezt.1	-	3	5866_5867	c.5790_5791CC>AA	c.(5788-5793)TCCCGT>TCAAGT	p.R1931S		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	1931	21.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			AAAGACTGACGGGAGCCAGACC	0.574000													12	709	---	---	---	---	0	0	6.4e-05	0	0
C11orf2	738	broad.mit.edu	37	11	64878010	64878010	+	Missense_Mutation	SNP	G	C	C			TCGA-EM-A2CP-01A-11D-A17V-08	TCGA-EM-A2CP-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8cd6882-be27-4742-bc63-3227d31bf704	e6101d92-5616-476e-8b38-8b6847ae3d48	g.chr11:64878010G>C	uc001ocr.1	+	8	1975	c.1935G>C	c.(1933-1935)AAG>AAC	p.K645N	TM7SF2_uc001oct.2_5'Flank|TM7SF2_uc010rny.1_5'Flank|TM7SF2_uc001ocu.2_5'Flank|TM7SF2_uc001ocv.2_5'Flank|C11orf2_uc001ocs.1_Missense_Mutation_p.K521N	NM_013265	NP_037397	Q9UID3	FFR_HUMAN	chromosome 11 open reading frame 2	645					lipid transport|protein transport	Golgi apparatus|integral to membrane					0						ACTCCAGCAAGAGGACTTTCT	0.637000											OREG0021071	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	193	---	---	---	---	0	0	0.00024832	0	0
LRRC32	2615	broad.mit.edu	37	11	76371702	76371702	+	Missense_Mutation	SNP	C	T	T			TCGA-EM-A2CP-01A-11D-A17V-08	TCGA-EM-A2CP-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8cd6882-be27-4742-bc63-3227d31bf704	e6101d92-5616-476e-8b38-8b6847ae3d48	g.chr11:76371702C>T	uc001oxq.3	-	3	1178	c.935G>A	c.(934-936)CGC>CAC	p.R312H	LRRC32_uc001oxr.3_Missense_Mutation_p.R312H|LRRC32_uc010rsf.1_Missense_Mutation_p.R312H	NM_005512	NP_005503	Q14392	LRC32_HUMAN	leucine rich repeat containing 32 precursor	312	Extracellular (Potential).					integral to plasma membrane					0						GGAAAGGGGGCGGCCGCTGGC	0.622000													7	44	---	---	---	---	0	0	0.000157383	0	0
RPL13AP20	387841	broad.mit.edu	37	12	13028751	13028751	+	Missense_Mutation	SNP	G	C	C			TCGA-EM-A2CP-01A-11D-A17V-08	TCGA-EM-A2CP-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8cd6882-be27-4742-bc63-3227d31bf704	e6101d92-5616-476e-8b38-8b6847ae3d48	g.chr12:13028751G>C	uc010sho.1	+	1	341	c.319G>C	c.(319-321)GGC>CGC	p.G107R		NR_003932				SubName: Full=Ribosomal protein L13a variant; Flags: Fragment;												0						GGTGTTTGACGGCATCCCACC	0.612000													4	20	---	---	---	---	0	0	1.23904e-05	0	0
KRTAP4-9	100132386	broad.mit.edu	37	17	39262247	39262247	+	Missense_Mutation	SNP	T	G	G			TCGA-EM-A2CP-01A-11D-A17V-08	TCGA-EM-A2CP-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8cd6882-be27-4742-bc63-3227d31bf704	e6101d92-5616-476e-8b38-8b6847ae3d48	g.chr17:39262247T>G	uc010wfp.1	+	1	607	c.607T>G	c.(607-609)TTG>GTG	p.L203V		NM_001146041	NP_001139513	Q9BYQ8	KRA49_HUMAN	keratin associated protein 4-9	203						keratin filament					0						CCCCCGCCCCTTGTGCTGTGC	0.547000													2	6	---	---	---	---	0	0	6.4e-05	0	0
PSG3	5671	broad.mit.edu	37	19	43242965	43242966	+	Missense_Mutation	DNP	CG	AT	AT	rs149473391	byFrequency	TCGA-EM-A2CP-01A-11D-A17V-08	TCGA-EM-A2CP-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8cd6882-be27-4742-bc63-3227d31bf704	e6101d92-5616-476e-8b38-8b6847ae3d48	g.chr19:43242965_43242966CG>AT	uc002oue.2	-	2	472_473	c.340_341CG>AT	c.(340-342)CGG>ATG	p.R114M	PSG3_uc002ouf.2_RNA|PSG1_uc002oug.1_Intron|PSG3_uc010eil.2_Missense_Mutation_p.R136M	NM_021016	NP_066296	Q16557	PSG3_HUMAN	pregnancy specific beta-1-glycoprotein 3	114	Ig-like V-type.				defense response|female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00682)				TGCGTCCTCCCGGGTGACATTC	0.460000													10	593	---	---	---	---	0	0	6.4e-05	0	0
STK36	27148	broad.mit.edu	37	2	219561866	219561866	+	Silent	SNP	A	G	G			TCGA-EM-A2CP-01A-11D-A17V-08	TCGA-EM-A2CP-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8cd6882-be27-4742-bc63-3227d31bf704	e6101d92-5616-476e-8b38-8b6847ae3d48	g.chr2:219561866A>G	uc002viu.2	+	23	2957	c.2691A>G	c.(2689-2691)GCA>GCG	p.A897A	STK36_uc002viv.2_Silent_p.A876A|STK36_uc002viw.2_Silent_p.A75A|STK36_uc002vix.2_5'UTR	NM_015690	NP_056505	Q9NRP7	STK36_HUMAN	serine/threonine kinase 36	897					cilium assembly|positive regulation of hh target transcription factor activity|positive regulation of smoothened signaling pathway|post-embryonic development	aggresome|cytoplasm|focal adhesion|intermediate filament cytoskeleton|nucleus	ATP binding|protein serine/threonine kinase activity|transcription factor binding			ovary(4)|stomach(2)|lung(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)	11		Renal(207;0.0915)		Epithelial(149;9.65e-07)|all cancers(144;0.000174)|LUSC - Lung squamous cell carcinoma(224;0.00813)|Lung(261;0.00984)		AGGCATCTGCACAGGAAGGGG	0.537000													5	235	---	---	---	---	0	0	3.59834e-05	0	0
LOC96610	96610	broad.mit.edu	37	22	22661474	22661474	+	RNA	SNP	C	T	T			TCGA-EM-A2CP-01A-11D-A17V-08	TCGA-EM-A2CP-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8cd6882-be27-4742-bc63-3227d31bf704	e6101d92-5616-476e-8b38-8b6847ae3d48	g.chr22:22661474C>T	uc011aim.1	+	28		c.1698C>T			LOC96610_uc011aiq.1_RNA|LOC96610_uc011aip.1_RNA|LOC96610_uc010gto.2_RNA					Parts of antibodies, mostly variable regions.												0						CCCTCAGATGCGTCTGAAGAA	0.493000													7	63	---	---	---	---	0	0	0.000442599	0	0
C22orf31	25770	broad.mit.edu	37	22	29456530	29456530	+	Missense_Mutation	SNP	G	C	C			TCGA-EM-A2CP-01A-11D-A17V-08	TCGA-EM-A2CP-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8cd6882-be27-4742-bc63-3227d31bf704	e6101d92-5616-476e-8b38-8b6847ae3d48	g.chr22:29456530G>C	uc003aej.1	-	2	432	c.305C>G	c.(304-306)TCG>TGG	p.S102W		NM_015370	NP_056185	O95567	CV031_HUMAN	hypothetical protein LOC25770	102											0						TAATCTCTTCGAGAGTTTTCC	0.483000													3	141	---	---	---	---	0	0	6.4e-05	0	0
Unknown	0	broad.mit.edu	37	5	79655273	79655273	+	Missense_Mutation	SNP	G	C	C	rs142881653	by1000genomes	TCGA-EM-A2CP-01A-11D-A17V-08	TCGA-EM-A2CP-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8cd6882-be27-4742-bc63-3227d31bf704	e6101d92-5616-476e-8b38-8b6847ae3d48	g.chr5:79655273G>C	uc003kgo.2	-	1	635	c.472C>G	c.(472-474)CGA>GGA	p.R158G						SubName: Full=Putative uncharacterized protein; Flags: Fragment;																		GAACCACTTCGACCTCTTTGG	0.274000													3	42	---	---	---	---	0	0	6.4e-05	0	0
LOC100133050	100133050	broad.mit.edu	37	5	99715520	99715520	+	RNA	SNP	C	T	T			TCGA-EM-A2CP-01A-11D-A17V-08	TCGA-EM-A2CP-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8cd6882-be27-4742-bc63-3227d31bf704	e6101d92-5616-476e-8b38-8b6847ae3d48	g.chr5:99715520C>T	uc011cuw.1	-	4		c.390G>A				NR_027503				Homo sapiens glucuronidase, beta pseudogene (LOC100133050), non-coding RNA.												0						TCACCAGCAGCGGACAGTCGA	0.597000													4	22	---	---	---	---	0	0	3.59834e-05	0	0
PMS2L11	441263	broad.mit.edu	37	7	76631515	76631515	+	RNA	SNP	G	A	A	rs61737189	by1000genomes	TCGA-EM-A2CP-01A-11D-A17V-08	TCGA-EM-A2CP-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8cd6882-be27-4742-bc63-3227d31bf704	e6101d92-5616-476e-8b38-8b6847ae3d48	g.chr7:76631515G>A	uc003ufw.3	+	4		c.656G>A			PMS2L11_uc011kgn.1_RNA	NR_023383				Homo sapiens cDNA FLJ59034 complete cds, moderately similar to Protein deltex-2.												0						TGTCCGCAGCGTCTGGATACA	0.617000													7	61	---	---	---	---	0	0	8.12818e-05	0	0
PRUNE2	158471	broad.mit.edu	37	9	79322343	79322343	+	Missense_Mutation	SNP	C	T	T			TCGA-EM-A2CP-01A-11D-A17V-08	TCGA-EM-A2CP-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8cd6882-be27-4742-bc63-3227d31bf704	e6101d92-5616-476e-8b38-8b6847ae3d48	g.chr9:79322343C>T	uc010mpk.2	-	8	4971	c.4847G>A	c.(4846-4848)CGC>CAC	p.R1616H		NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	1616					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						AGGAGTTTTGCGATCAAAGCT	0.353000													4	56	---	---	---	---	0	0	0.00024832	0	0
MAGED2	10916	broad.mit.edu	37	X	54841696	54841696	+	Missense_Mutation	SNP	C	T	T			TCGA-EM-A2CP-01A-11D-A17V-08	TCGA-EM-A2CP-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8cd6882-be27-4742-bc63-3227d31bf704	e6101d92-5616-476e-8b38-8b6847ae3d48	g.chrX:54841696C>T	uc004dtk.1	+	12	1496	c.1402C>T	c.(1402-1404)CCC>TCC	p.P468S	MAGED2_uc004dtl.1_Missense_Mutation_p.P468S|MAGED2_uc004dtm.1_Missense_Mutation_p.P383S|MAGED2_uc010nkc.1_Intron|MAGED2_uc004dtn.1_Missense_Mutation_p.P468S|MAGED2_uc004dto.1_Missense_Mutation_p.P442S	NM_177433	NP_803182	Q9UNF1	MAGD2_HUMAN	melanoma antigen family D, 2	468	MAGE.									ovary(2)|breast(1)	3						AAAGAAGGATCCCAAGGAATG	0.378000													4	70	---	---	---	---	0	0	1.23904e-05	0	0
PRRG3	79057	broad.mit.edu	37	X	150869382	150869382	+	Silent	SNP	C	T	T			TCGA-EM-A2CP-01A-11D-A17V-08	TCGA-EM-A2CP-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8cd6882-be27-4742-bc63-3227d31bf704	e6101d92-5616-476e-8b38-8b6847ae3d48	g.chrX:150869382C>T	uc004few.1	+	4	963	c.573C>T	c.(571-573)CCC>CCT	p.P191P		NM_024082	NP_076987	Q9BZD7	TMG3_HUMAN	proline rich Gla (G-carboxyglutamic acid) 3	191	Cytoplasmic (Potential).					extracellular region|integral to membrane	calcium ion binding			ovary(3)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					CCACCCCTCCCCCCTCCTACG	0.647000													4	63	---	---	---	---	0	0	1.23904e-05	0	0
Unknown	0	broad.mit.edu	37	1	13354395	13354396	+	IGR	INS	-	T	T			TCGA-EM-A2CP-01A-11D-A17V-08	TCGA-EM-A2CP-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8cd6882-be27-4742-bc63-3227d31bf704	e6101d92-5616-476e-8b38-8b6847ae3d48	g.chr1:13354395_13354396insT								PRAMEF3 (22724 upstream) : PRAMEF9 (66780 downstream)																							GACACAGGTGCttttttttttt	0.257													3	3	---	---	---	---					
CHD2	1106	broad.mit.edu	37	15	93545433	93545434	+	Frame_Shift_Ins	INS	-	A	A			TCGA-EM-A2CP-01A-11D-A17V-08	TCGA-EM-A2CP-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8cd6882-be27-4742-bc63-3227d31bf704	e6101d92-5616-476e-8b38-8b6847ae3d48	g.chr15:93545433_93545434insA	uc002bsp.2	+	33	4739_4740	c.4164_4165insA	c.(4162-4167)ATGAAAfs	p.M1388fs	CHD2_uc002bso.1_Frame_Shift_Ins_p.M1388fs	NM_001271	NP_001262	O14647	CHD2_HUMAN	chromodomain helicase DNA binding protein 2	1388_1389					regulation of transcription from RNA polymerase II promoter	nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|skin(1)	2	Lung NSC(78;0.00976)|all_lung(78;0.016)		BRCA - Breast invasive adenocarcinoma(143;0.0282)|OV - Ovarian serous cystadenocarcinoma(32;0.0814)			AAAGTCCAATgaaaaaaaaaca	0.158													8	160	---	---	---	---					
PRR25	388199	broad.mit.edu	37	16	863356	863372	+	Frame_Shift_Del	DEL	GGACGCCGGACCGACAC	-	-	rs113623365		TCGA-EM-A2CP-01A-11D-A17V-08	TCGA-EM-A2CP-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8cd6882-be27-4742-bc63-3227d31bf704	e6101d92-5616-476e-8b38-8b6847ae3d48	g.chr16:863356_863372delGGACGCCGGACCGACAC	uc010uut.1	+	3	704_720	c.704_720delGGACGCCGGACCGACAC	c.(703-720)AGGACGCCGGACCGACACfs	p.R235fs		NM_001013638	NP_001013660	Q96S07	PRR25_HUMAN	proline rich 25	235_240										large_intestine(1)	1						GGACCGGCAAGGACGCCGGACCGACACGGCCTCCCCA	0.714													8	7	---	---	---	---					
KDM6B	23135	broad.mit.edu	37	17	7751764	7751765	+	Frame_Shift_Ins	INS	-	C	C	rs146391855		TCGA-EM-A2CP-01A-11D-A17V-08	TCGA-EM-A2CP-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8cd6882-be27-4742-bc63-3227d31bf704	e6101d92-5616-476e-8b38-8b6847ae3d48	g.chr17:7751764_7751765insC	uc002giw.1	+	11	2534_2535	c.2158_2159insC	c.(2158-2160)GCCfs	p.A720fs	KDM6B_uc002gix.2_Frame_Shift_Ins_p.A22fs	NM_001080424	NP_001073893	O15054	KDM6B_HUMAN	lysine (K)-specific demethylase 6B	720	Pro-rich.				inflammatory response	nucleus	metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			central_nervous_system(1)|pancreas(1)	2						AGCAGGCGTGGCCCCCCAACCC	0.559													11	195	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	16745185	16745185	+	IGR	DEL	A	-	-			TCGA-EM-A2CP-01A-11D-A17V-08	TCGA-EM-A2CP-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8cd6882-be27-4742-bc63-3227d31bf704	e6101d92-5616-476e-8b38-8b6847ae3d48	g.chr17:16745185delA								LOC162632 (37366 upstream) : TNFRSF13B (87664 downstream)																							AGGCTGAAAGAAAAAAAAAAA	0.567													3	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	25308941	25308943	+	IGR	DEL	TGA	-	-			TCGA-EM-A2CP-01A-11D-A17V-08	TCGA-EM-A2CP-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8cd6882-be27-4742-bc63-3227d31bf704	e6101d92-5616-476e-8b38-8b6847ae3d48	g.chr17:25308941_25308943delTGA								None (None upstream) : WSB1 (312163 downstream)																							CCGTGCTCTTTGAGGAGAAGAAC	0.586													7	130	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	64893259	64893259	+	IGR	DEL	A	-	-			TCGA-EM-A2CP-01A-11D-A17V-08	TCGA-EM-A2CP-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8cd6882-be27-4742-bc63-3227d31bf704	e6101d92-5616-476e-8b38-8b6847ae3d48	g.chr2:64893259delA								SERTAD2 (12213 upstream) : SLC1A4 (322320 downstream)																							AACTTAAAATAAAAAAAAAAA	0.269													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	21	40499414	40499415	+	IGR	INS	-	T	T	rs147438953	by1000genomes	TCGA-EM-A2CP-01A-11D-A17V-08	TCGA-EM-A2CP-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8cd6882-be27-4742-bc63-3227d31bf704	e6101d92-5616-476e-8b38-8b6847ae3d48	g.chr21:40499414_40499415insT								ETS2 (302538 upstream) : PSMG1 (47975 downstream)																							Ttttttttttgttttgttttgt	0.307													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	70267902	70267902	+	IGR	DEL	A	-	-			TCGA-EM-A2CP-01A-11D-A17V-08	TCGA-EM-A2CP-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8cd6882-be27-4742-bc63-3227d31bf704	e6101d92-5616-476e-8b38-8b6847ae3d48	g.chr4:70267902delA								UGT2B28 (107135 upstream) : UGT2B4 (77982 downstream)																							TTCCTATGACAAAAAAAAAAA	0.323													3	5	---	---	---	---					
HLA-DRB5	3127	broad.mit.edu	37	6	32557612	32557612	+	5'Flank	DEL	G	-	-			TCGA-EM-A2CP-01A-11D-A17V-08	TCGA-EM-A2CP-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8cd6882-be27-4742-bc63-3227d31bf704	e6101d92-5616-476e-8b38-8b6847ae3d48	g.chr6:32557612delG	uc003obk.3	-						HLA-DRB1_uc003obp.3_5'Flank	NM_002125	NP_002116	Q30154	DRB5_HUMAN	major histocompatibility complex, class II, DR						antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|immune response	endoplasmic reticulum membrane|Golgi apparatus|integral to membrane|late endosome membrane|lysosomal membrane|MHC class II protein complex					0						CCAAGTTATAGGGAGGAAGTT	0.507													5	7	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	160133097	160133113	+	IGR	DEL	CTCGGCTGCTCAGACCT	-	-	rs71551146		TCGA-EM-A2CP-01A-11D-A17V-08	TCGA-EM-A2CP-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8cd6882-be27-4742-bc63-3227d31bf704	e6101d92-5616-476e-8b38-8b6847ae3d48	g.chr6:160133097_160133113delCTCGGCTGCTCAGACCT								SOD2 (18744 upstream) : WTAP (15016 downstream)																							ataaccaccacTCGGCTGCTCAGacctccataaccac	0.074													5	7	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	57659644	57659644	+	IGR	DEL	G	-	-	rs111399871		TCGA-EM-A2CP-01A-11D-A17V-08	TCGA-EM-A2CP-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8cd6882-be27-4742-bc63-3227d31bf704	e6101d92-5616-476e-8b38-8b6847ae3d48	g.chr7:57659644delG								ZNF716 (126379 upstream) : None (None downstream)																							CATGTTTTTTGTGTTTTTCTT	0.353													7	5	---	---	---	---					
