Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
DDX11	1663	broad.mit.edu	37	12	31256617	31256617	+	Missense_Mutation	SNP	T	C	C			TCGA-EM-A3AI-01A-11D-A202-08	TCGA-EM-A3AI-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2d60229-ba66-4c45-968a-72292b48add3	466ebb6e-b9e9-4556-9f48-3b7685f0f4e2	g.chr12:31256617T>C	uc001rjt.1	+	26	2889	c.2638T>C	c.(2638-2640)TGT>CGT	p.C880R	DDX11_uc001rjr.1_Silent_p.R881R|DDX11_uc001rjs.1_Silent_p.R831R|DDX11_uc001rju.1_Silent_p.R553R|DDX11_uc001rjv.1_Missense_Mutation_p.C880R|DDX11_uc001rjw.1_Silent_p.R855R|DDX11_uc009zjn.1_RNA|DDX11_uc009zjo.1_Missense_Mutation_p.C49R	NM_152438	NP_689651	Q96FC9	DDX11_HUMAN	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11	880					G2/M transition of mitotic cell cycle|interspecies interaction between organisms|mitotic sister chromatid segregation|positive regulation of cell proliferation|S phase of mitotic cell cycle|sister chromatid cohesion	midbody|nuclear chromatin|nucleolus|spindle pole	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding|RNA binding			breast(3)	3	all_cancers(9;1.77e-11)|all_lung(12;6.21e-11)|all_epithelial(9;6.49e-11)|Lung NSC(12;1.06e-08)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Lung SC(12;0.0592)|Esophageal squamous(101;0.233)					TCCGAGCCCGTGTGGAGGTCA	0.597										Multiple Myeloma(12;0.14)			5	156	---	---	---	---	0	0	0.001168	0	0
GPR133	283383	broad.mit.edu	37	12	131484927	131484927	+	Splice_Site	SNP	G	C	C			TCGA-EM-A3AI-01A-11D-A202-08	TCGA-EM-A3AI-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2d60229-ba66-4c45-968a-72292b48add3	466ebb6e-b9e9-4556-9f48-3b7685f0f4e2	g.chr12:131484927G>C	uc001uit.3	+	9	1526	c.967_splice	c.e9-1	p.T323_splice	GPR133_uc010tbm.1_Splice_Site_p.T355_splice	NM_198827	NP_942122	Q6QNK2	GP133_HUMAN	G protein-coupled receptor 133 precursor						neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(5)|ovary(3)|skin(2)	10	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;1.68e-06)|all cancers(50;2.71e-06)|Epithelial(86;6.75e-06)		TCCACCTTTAGACCTTCTTAA	0.408													28	95	---	---	---	---	0	0	0.008361	0	0
EDDM3B	64184	broad.mit.edu	37	14	21238577	21238577	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EM-A3AI-01A-11D-A202-08	TCGA-EM-A3AI-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2d60229-ba66-4c45-968a-72292b48add3	466ebb6e-b9e9-4556-9f48-3b7685f0f4e2	g.chr14:21238577C>T	uc001vyd.2	+	2	366	c.268C>T	c.(268-270)CGA>TGA	p.R90*		NM_022360	NP_071755	P56851	EP3B_HUMAN	human epididymis-specific 3 beta precursor	90					spermatid development	extracellular region				ovary(1)	1						GGATCGCTTCCGAAATGCATA	0.408													58	63	---	---	---	---	0	0	0.003610	0	0
AHNAK2	113146	broad.mit.edu	37	14	105409977	105409977	+	Silent	SNP	G	A	A			TCGA-EM-A3AI-01A-11D-A202-08	TCGA-EM-A3AI-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2d60229-ba66-4c45-968a-72292b48add3	466ebb6e-b9e9-4556-9f48-3b7685f0f4e2	g.chr14:105409977G>A	uc010axc.1	-	7	11931	c.11811C>T	c.(11809-11811)GAC>GAT	p.D3937D	AHNAK2_uc001ypx.2_Silent_p.D3837D	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	3937						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			GGGCCTCGACGTCCACCTCCA	0.597													6	408	---	---	---	---	0	0	0.006214	0	0
EFNB3	1949	broad.mit.edu	37	17	7612771	7612771	+	Silent	SNP	C	T	T			TCGA-EM-A3AI-01A-11D-A202-08	TCGA-EM-A3AI-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2d60229-ba66-4c45-968a-72292b48add3	466ebb6e-b9e9-4556-9f48-3b7685f0f4e2	g.chr17:7612771C>T	uc002gis.2	+	5	1297	c.900C>T	c.(898-900)GGC>GGT	p.G300G		NM_001406	NP_001397	Q15768	EFNB3_HUMAN	ephrin-B3 precursor	300	Cytoplasmic (Potential).				cell-cell signaling|interspecies interaction between organisms	integral to plasma membrane	ephrin receptor binding|transmembrane-ephrin receptor activity			ovary(1)	1		all_cancers(10;1.14e-06)|Prostate(122;0.081)				TGCGGGGTGGCGGGGCTGCAG	0.667													15	85	---	---	---	---	0	0	0.006122	0	0
FLJ36000	284124	broad.mit.edu	37	17	21904155	21904155	+	RNA	SNP	G	A	A			TCGA-EM-A3AI-01A-11D-A202-08	TCGA-EM-A3AI-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2d60229-ba66-4c45-968a-72292b48add3	466ebb6e-b9e9-4556-9f48-3b7685f0f4e2	g.chr17:21904155G>A	uc002gza.2	+	1		c.94G>A				NR_027084				Homo sapiens cDNA FLJ36000 fis, clone TESTI2015180.												0						aaccacaggcggagtccgggg	0													8	180	---	---	---	---	0	0	0.004482	0	0
NEDD4L	23327	broad.mit.edu	37	18	55998052	55998052	+	Missense_Mutation	SNP	G	T	T			TCGA-EM-A3AI-01A-11D-A202-08	TCGA-EM-A3AI-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2d60229-ba66-4c45-968a-72292b48add3	466ebb6e-b9e9-4556-9f48-3b7685f0f4e2	g.chr18:55998052G>T	uc002lgy.2	+	11	1170	c.896G>T	c.(895-897)GGA>GTA	p.G299V	NEDD4L_uc002lgz.2_Missense_Mutation_p.G299V|NEDD4L_uc002lgx.2_Missense_Mutation_p.G299V|NEDD4L_uc010xee.1_Missense_Mutation_p.G178V|NEDD4L_uc002lhc.2_Missense_Mutation_p.G291V|NEDD4L_uc002lhd.2_Missense_Mutation_p.G178V|NEDD4L_uc002lhb.2_Missense_Mutation_p.G178V|NEDD4L_uc002lhe.2_Missense_Mutation_p.G291V|NEDD4L_uc002lhf.2_Missense_Mutation_p.G178V|NEDD4L_uc002lhg.2_Missense_Mutation_p.G178V|NEDD4L_uc002lhh.2_Missense_Mutation_p.G178V|NEDD4L_uc010dpm.1_Missense_Mutation_p.G150V	NM_001144967	NP_001138439	Q96PU5	NED4L_HUMAN	neural precursor cell expressed, developmentally	299					cellular sodium ion homeostasis|excretion|interspecies interaction between organisms|positive regulation of endocytosis|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|regulation of protein catabolic process|response to metal ion|sodium ion transport|water homeostasis	cytoplasm	protein binding|sodium channel regulator activity|ubiquitin-protein ligase activity			lung(4)	4						GCCTCCCCAGGATCTCGGACC	0.542													6	47	---	---	---	---	0.00116845	0.00194741	0.001168	1	0
ZNF799	90576	broad.mit.edu	37	19	12502821	12502821	+	Missense_Mutation	SNP	A	G	G	rs2902319		TCGA-EM-A3AI-01A-11D-A202-08	TCGA-EM-A3AI-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2d60229-ba66-4c45-968a-72292b48add3	466ebb6e-b9e9-4556-9f48-3b7685f0f4e2	g.chr19:12502821A>G	uc010dyt.2	-	4	541	c.391T>C	c.(391-393)TAT>CAT	p.Y131H	ZNF799_uc002mts.3_Intron	NM_001080821	NP_001074290	Q96GE5	ZN799_HUMAN	zinc finger protein 799	131					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(3)|ovary(2)|skin(1)	6						TGATACTCATATGGTTTGTGC	0.448													3	99	---	---	---	---	0	0	0.004672	0	0
ELL	8178	broad.mit.edu	37	19	18572546	18572546	+	Missense_Mutation	SNP	C	T	T			TCGA-EM-A3AI-01A-11D-A202-08	TCGA-EM-A3AI-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2d60229-ba66-4c45-968a-72292b48add3	466ebb6e-b9e9-4556-9f48-3b7685f0f4e2	g.chr19:18572546C>T	uc002njh.2	-	5	658	c.586G>A	c.(586-588)GTG>ATG	p.V196M	ELL_uc010ebq.2_Missense_Mutation_p.V139M|ELL_uc002njg.2_Missense_Mutation_p.V63M	NM_006532	NP_006523	P55199	ELL_HUMAN	elongation factor RNA polymerase II	196					positive regulation of transcription elongation, DNA-dependent|positive regulation of viral transcription|transcription elongation from RNA polymerase II promoter|viral reproduction	Cajal body|nuclear speck|transcription elongation factor complex	protein binding			lung(1)	1				GBM - Glioblastoma multiforme(1328;7.81e-07)		CCCCCACTCACGGCACTGGCA	0.667			T	MLL	AL						OREG0025366	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	25	39	---	---	---	---	0	0	0.002780	0	0
C20orf165	128497	broad.mit.edu	37	20	44515629	44515629	+	Missense_Mutation	SNP	T	C	C			TCGA-EM-A3AI-01A-11D-A202-08	TCGA-EM-A3AI-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2d60229-ba66-4c45-968a-72292b48add3	466ebb6e-b9e9-4556-9f48-3b7685f0f4e2	g.chr20:44515629T>C	uc002xqf.2	-	2	220	c.211A>G	c.(211-213)AGG>GGG	p.R71G		NM_080608	NP_542175	Q9BR10	CT165_HUMAN	chromosome 20 open reading frame 165	71						integral to membrane					0		Myeloproliferative disorder(115;0.0122)				GGGCAGCCCCTGGCTTGTGGC	0.642													73	210	---	---	---	---	0	0	0.003610	0	0
PRPF6	24148	broad.mit.edu	37	20	62657293	62657293	+	Missense_Mutation	SNP	C	T	T			TCGA-EM-A3AI-01A-11D-A202-08	TCGA-EM-A3AI-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2d60229-ba66-4c45-968a-72292b48add3	466ebb6e-b9e9-4556-9f48-3b7685f0f4e2	g.chr20:62657293C>T	uc002yho.2	+	15	2078	c.1910C>T	c.(1909-1911)GCC>GTC	p.A637V	PRPF6_uc002yhp.2_Intron	NM_012469	NP_036601	O94906	PRP6_HUMAN	PRP6 pre-mRNA processing factor 6 homolog	637	HAT 6.				assembly of spliceosomal tri-snRNP|positive regulation of transcription from RNA polymerase II promoter|spliceosome assembly	catalytic step 2 spliceosome|nucleoplasm|U4/U6 snRNP|U4/U6 x U5 tri-snRNP complex|U5 snRNP	androgen receptor binding|ribonucleoprotein binding|transcription coactivator activity			ovary(2)	2	all_cancers(38;6.47e-12)|all_epithelial(29;1.26e-13)|Lung NSC(23;9.37e-10)|all_lung(23;3.23e-09)					GCCCTTCAGGCCAACCCCAAC	0.612													127	419	---	---	---	---	0	0	0.003610	0	0
GRIK1	2897	broad.mit.edu	37	21	31023467	31023467	+	Missense_Mutation	SNP	C	T	T			TCGA-EM-A3AI-01A-11D-A202-08	TCGA-EM-A3AI-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2d60229-ba66-4c45-968a-72292b48add3	466ebb6e-b9e9-4556-9f48-3b7685f0f4e2	g.chr21:31023467C>T	uc002yno.1	-	6	1389	c.925G>A	c.(925-927)GAG>AAG	p.E309K	GRIK1_uc002ynn.2_Missense_Mutation_p.E309K|GRIK1_uc011acs.1_Missense_Mutation_p.E309K|GRIK1_uc011act.1_Missense_Mutation_p.E253K|GRIK1_uc010glq.1_Missense_Mutation_p.E167K|GRIK1_uc002ynr.2_Missense_Mutation_p.E309K	NM_000830	NP_000821	P39086	GRIK1_HUMAN	glutamate receptor, ionotropic, kainate 1	309	Extracellular (Potential).				central nervous system development|synaptic transmission	cell junction|postsynaptic membrane	kainate selective glutamate receptor activity			large_intestine(1)|ovary(1)|skin(1)	3					L-Glutamic Acid(DB00142)|Topiramate(DB00273)	AGGCCAGTCTCGGGCCTGGGT	0.463													11	62	---	---	---	---	0	0	0.002450	0	0
TRAPPC10	7109	broad.mit.edu	37	21	45511884	45511884	+	Missense_Mutation	SNP	A	G	G			TCGA-EM-A3AI-01A-11D-A202-08	TCGA-EM-A3AI-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2d60229-ba66-4c45-968a-72292b48add3	466ebb6e-b9e9-4556-9f48-3b7685f0f4e2	g.chr21:45511884A>G	uc002zea.2	+	19	3120	c.2951A>G	c.(2950-2952)GAT>GGT	p.D984G	TRAPPC10_uc010gpo.2_Missense_Mutation_p.D695G|TRAPPC10_uc011afa.1_Missense_Mutation_p.D362G|TRAPPC10_uc011afb.1_Missense_Mutation_p.D89G	NM_003274	NP_003265	P48553	TPC10_HUMAN	trafficking protein particle complex 10	984					vesicle-mediated transport	Golgi apparatus|integral to membrane	binding|sodium ion transmembrane transporter activity			ovary(1)|skin(1)	2						GATACCGGTGATAGTACCGAC	0.408													4	123	---	---	---	---	0	0	0.000248	0	0
PI4K2B	55300	broad.mit.edu	37	4	25265420	25265420	+	Missense_Mutation	SNP	A	G	G			TCGA-EM-A3AI-01A-11D-A202-08	TCGA-EM-A3AI-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2d60229-ba66-4c45-968a-72292b48add3	466ebb6e-b9e9-4556-9f48-3b7685f0f4e2	g.chr4:25265420A>G	uc003grk.2	+	7	1160	c.1027A>G	c.(1027-1029)ATT>GTT	p.I343V	PI4K2B_uc011bxs.1_Missense_Mutation_p.I247V	NM_018323	NP_060793	Q8TCG2	P4K2B_HUMAN	phosphatidylinositol 4-kinase type 2 beta	343	PI3K/PI4K.					cytoplasm|membrane	1-phosphatidylinositol 4-kinase activity|ATP binding			ovary(2)|skin(2)	4		Breast(46;0.173)				AATAGCTGCAATTGATAATGG	0.303													41	50	---	---	---	---	0	0	0.002852	0	0
CDH9	1007	broad.mit.edu	37	5	26890658	26890658	+	Silent	SNP	C	T	T			TCGA-EM-A3AI-01A-11D-A202-08	TCGA-EM-A3AI-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2d60229-ba66-4c45-968a-72292b48add3	466ebb6e-b9e9-4556-9f48-3b7685f0f4e2	g.chr5:26890658C>T	uc003jgs.1	-	8	1438	c.1269G>A	c.(1267-1269)CGG>CGA	p.R423R	CDH9_uc011cnv.1_Silent_p.R16R	NM_016279	NP_057363	Q9ULB4	CADH9_HUMAN	cadherin 9, type 2 preproprotein	423	Extracellular (Potential).|Cadherin 4.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)	9						TATCAGTATGCCGATCAACAG	0.388													4	120	---	---	---	---	0	0	0.000248	0	0
GPX8	493869	broad.mit.edu	37	5	54456042	54456042	+	Missense_Mutation	SNP	C	T	T			TCGA-EM-A3AI-01A-11D-A202-08	TCGA-EM-A3AI-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2d60229-ba66-4c45-968a-72292b48add3	466ebb6e-b9e9-4556-9f48-3b7685f0f4e2	g.chr5:54456042C>T	uc003jpq.2	+	1	59	c.22C>T	c.(22-24)CCG>TCG	p.P8S	CDC20B_uc003jpn.1_Intron|CDC20B_uc010ivu.1_Intron|CDC20B_uc003jpo.1_Intron|CDC20B_uc010ivv.1_Intron|CDC20B_uc003jpp.2_Intron|GPX8_uc003jpr.2_Missense_Mutation_p.P8S|GPX8_uc003jps.2_RNA|GPX8_uc003jpt.2_Missense_Mutation_p.P8S	NM_001008397	NP_001008398	Q8TED1	GPX8_HUMAN	glutathione peroxidase 8	8					response to oxidative stress	integral to membrane	glutathione peroxidase activity				0					Glutathione(DB00143)	TGCAGCTTACCCGCTAAAATG	0.448													45	40	---	---	---	---	0	0	0.003610	0	0
PCSK1	5122	broad.mit.edu	37	5	95735729	95735729	+	Missense_Mutation	SNP	G	A	A			TCGA-EM-A3AI-01A-11D-A202-08	TCGA-EM-A3AI-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2d60229-ba66-4c45-968a-72292b48add3	466ebb6e-b9e9-4556-9f48-3b7685f0f4e2	g.chr5:95735729G>A	uc003kls.1	-	10	1564	c.1358C>T	c.(1357-1359)GCT>GTT	p.A453V	PCSK1_uc010jbi.1_Missense_Mutation_p.A143V	NM_000439	NP_000430	P29120	NEC1_HUMAN	proprotein convertase subtilisin/kexin type 1	453					cell-cell signaling|cellular nitrogen compound metabolic process|energy reserve metabolic process|hormone biosynthetic process|peptide biosynthetic process|peptide hormone processing|regulation of insulin secretion	extracellular space|stored secretory granule|transport vesicle	serine-type endopeptidase activity			ovary(2)	2		all_cancers(142;2.67e-06)|all_epithelial(76;6.92e-09)|all_lung(232;0.00307)|Lung NSC(167;0.00452)|Ovarian(225;0.0112)|Colorectal(57;0.0341)|Breast(839;0.244)		all cancers(79;3.44e-16)	Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	CCTGGGGTCAGCTAAATCCAC	0.463													3	91	---	---	---	---	0	0	0.000248	0	0
NCAPG2	54892	broad.mit.edu	37	7	158448053	158448053	+	Missense_Mutation	SNP	A	G	G			TCGA-EM-A3AI-01A-11D-A202-08	TCGA-EM-A3AI-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2d60229-ba66-4c45-968a-72292b48add3	466ebb6e-b9e9-4556-9f48-3b7685f0f4e2	g.chr7:158448053A>G	uc003wnv.1	-	20	2628	c.2483T>C	c.(2482-2484)CTG>CCG	p.L828P	NCAPG2_uc010lqu.1_Missense_Mutation_p.L620P|NCAPG2_uc003wnw.1_RNA|NCAPG2_uc003wnx.1_Missense_Mutation_p.L828P|NCAPG2_uc011kwe.1_Missense_Mutation_p.L828P|NCAPG2_uc011kwc.1_Missense_Mutation_p.L329P|NCAPG2_uc011kwd.1_Missense_Mutation_p.L271P	NM_017760	NP_060230	Q86XI2	CNDG2_HUMAN	leucine zipper protein 5	828					cell division|chromosome condensation|mitosis	nucleus	methylated histone residue binding			ovary(1)|breast(1)|kidney(1)	3	Ovarian(565;0.152)	all_cancers(7;3.44e-11)|all_epithelial(9;3.05e-05)|all_hematologic(28;0.014)	OV - Ovarian serous cystadenocarcinoma(82;0.00174)	UCEC - Uterine corpus endometrioid carcinoma (81;0.187)|STAD - Stomach adenocarcinoma(7;0.18)		ATGGATGCTCAGGCGACAGTG	0.522													4	481	---	---	---	---	0	0	0.000602	0	0
CSMD3	114788	broad.mit.edu	37	8	113529419	113529419	+	Missense_Mutation	SNP	G	A	A			TCGA-EM-A3AI-01A-11D-A202-08	TCGA-EM-A3AI-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2d60229-ba66-4c45-968a-72292b48add3	466ebb6e-b9e9-4556-9f48-3b7685f0f4e2	g.chr8:113529419G>A	uc003ynu.2	-	28	4759	c.4600C>T	c.(4600-4602)CCC>TCC	p.P1534S	CSMD3_uc003yns.2_Missense_Mutation_p.P806S|CSMD3_uc003ynt.2_Missense_Mutation_p.P1494S|CSMD3_uc011lhx.1_Missense_Mutation_p.P1430S	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	1534	Extracellular (Potential).|Sushi 8.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						CCATTCATGGGGACCCCTGGG	0.428										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			3	32	---	---	---	---	0	0	0.004672	0	0
TG	7038	broad.mit.edu	37	8	133885318	133885318	+	Missense_Mutation	SNP	T	G	G			TCGA-EM-A3AI-01A-11D-A202-08	TCGA-EM-A3AI-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2d60229-ba66-4c45-968a-72292b48add3	466ebb6e-b9e9-4556-9f48-3b7685f0f4e2	g.chr8:133885318T>G	uc003ytw.2	+	5	531	c.490T>G	c.(490-492)TGT>GGT	p.C164G		NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	164	Thyroglobulin type-1 3.				hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		TCCAAGGAGCTGTGAAATAAG	0.413													5	36	---	---	---	---	0	0	0.001168	0	0
MST4	51765	broad.mit.edu	37	X	131205246	131205246	+	Splice_Site	SNP	G	A	A			TCGA-EM-A3AI-01A-11D-A202-08	TCGA-EM-A3AI-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2d60229-ba66-4c45-968a-72292b48add3	466ebb6e-b9e9-4556-9f48-3b7685f0f4e2	g.chrX:131205246G>A	uc004ewk.1	+	8	1233	c.932_splice	c.e8+1	p.S311_splice	MST4_uc004ewl.1_Splice_Site_p.S234_splice|MST4_uc011mux.1_Splice_Site_p.S333_splice|MST4_uc010nrj.1_Splice_Site_p.S311_splice|MST4_uc004ewm.1_Splice_Site_p.S249_splice	NM_016542	NP_057626	Q9P289	MST4_HUMAN	serine/threonine protein kinase MST4 isoform 1						cellular component disassembly involved in apoptosis|regulation of apoptosis	cytosol|Golgi membrane	ATP binding|identical protein binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(3)|lung(3)|stomach(2)|upper_aerodigestive_tract(1)	9	Acute lymphoblastic leukemia(192;0.000127)					GCTCTGATTCGTATGTACAAA	0.348													12	110	---	---	---	---	0	0	0.000978	0	0
Unknown	0	broad.mit.edu	37	14	44760816	44760816	+	IGR	DEL	A	-	-			TCGA-EM-A3AI-01A-11D-A202-08	TCGA-EM-A3AI-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2d60229-ba66-4c45-968a-72292b48add3	466ebb6e-b9e9-4556-9f48-3b7685f0f4e2	g.chr14:44760816delA								None (None upstream) : FSCB (212539 downstream)																							CTCTCCTAATAAAAAAAAAAT	0.393													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	15	40605564	40605564	+	IGR	DEL	T	-	-			TCGA-EM-A3AI-01A-11D-A202-08	TCGA-EM-A3AI-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2d60229-ba66-4c45-968a-72292b48add3	466ebb6e-b9e9-4556-9f48-3b7685f0f4e2	g.chr15:40605564delT								PLCB2 (5390 upstream) : C15orf52 (18090 downstream)																							CAAGAGAGAGTTTTTTTtttt	0.269													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	15	90825346	90825347	+	IGR	INS	-	T	T			TCGA-EM-A3AI-01A-11D-A202-08	TCGA-EM-A3AI-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2d60229-ba66-4c45-968a-72292b48add3	466ebb6e-b9e9-4556-9f48-3b7685f0f4e2	g.chr15:90825346_90825347insT								TTLL13 (9903 upstream) : GABARAPL3 (64418 downstream)																							AAAAGGTTTTGTTTTTTTTTTG	0.361													3	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	37238763	37238764	+	Frame_Shift_Del	DEL	GT	-	-			TCGA-EM-A3AI-01A-11D-A202-08	TCGA-EM-A3AI-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2d60229-ba66-4c45-968a-72292b48add3	466ebb6e-b9e9-4556-9f48-3b7685f0f4e2	g.chr19:37238763_37238764delGT	uc010efc.2	-	5	3337_3338	c.3172_3173delAC	c.(3172-3174)ACTfs	p.T1058fs	uc010xtm.1_Frame_Shift_Del_p.T1026fs					Homo sapiens zinc finger protein 850 pseudogene, mRNA (cDNA clone IMAGE:6082150).																		TTTCTCGCCAGTGTGAACACTC	0.421													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	133018713	133018714	+	IGR	DEL	GG	-	-	rs144729406		TCGA-EM-A3AI-01A-11D-A202-08	TCGA-EM-A3AI-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2d60229-ba66-4c45-968a-72292b48add3	466ebb6e-b9e9-4556-9f48-3b7685f0f4e2	g.chr2:133018713_133018714delGG								NCRNA00164 (3171 upstream) : GPR39 (155433 downstream)																							TGGGCGGGGTGGTGGGGGGTGC	0.530													3	4	---	---	---	---					
FABP2	2169	broad.mit.edu	37	4	120243417	120243418	+	5'Flank	INS	-	TC	TC	rs144572173	by1000genomes	TCGA-EM-A3AI-01A-11D-A202-08	TCGA-EM-A3AI-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2d60229-ba66-4c45-968a-72292b48add3	466ebb6e-b9e9-4556-9f48-3b7685f0f4e2	g.chr4:120243417_120243418insTC	uc003icw.2	-							NM_000134	NP_000125	P12104	FABPI_HUMAN	intestinal fatty acid binding protein 2								fatty acid binding			ovary(1)	1						TTAATTCTTATTAATTAATTCT	0.282													4	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	64975077	64975078	+	IGR	INS	-	AGAC	AGAC			TCGA-EM-A3AI-01A-11D-A202-08	TCGA-EM-A3AI-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	e2d60229-ba66-4c45-968a-72292b48add3	466ebb6e-b9e9-4556-9f48-3b7685f0f4e2	g.chr7:64975077_64975078insAGAC								ZNF92 (109080 upstream) : INTS4L2 (137699 downstream)																							AGTGCACCCGAAAACAAAGATG	0.455													4	7	---	---	---	---					
