Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
BEST4	266675	broad.mit.edu	37	1	45250578	45250578	+	Missense_Mutation	SNP	T	C	C			TCGA-ET-A2N5-01A-11D-A18F-08	TCGA-ET-A2N5-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f94cb83-7a8f-4eda-8c8e-51811c764160	bc834ff5-cc6c-4711-b85e-9870f290b91f	g.chr1:45250578T>C	uc001cmm.2	-	7	1041	c.992A>G	c.(991-993)CAG>CGG	p.Q331R		NM_153274	NP_695006	Q8NFU0	BEST4_HUMAN	bestrophin 4	331	Cytoplasmic (Potential).					chloride channel complex|plasma membrane	chloride channel activity			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)					CTTGCTCACCTGCAAGTTGCG	0.577000													3	73	---	---	---	---	0	0	0.004672	0	0
AMPD1	270	broad.mit.edu	37	1	115222322	115222322	+	Missense_Mutation	SNP	A	G	G			TCGA-ET-A2N5-01A-11D-A18F-08	TCGA-ET-A2N5-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f94cb83-7a8f-4eda-8c8e-51811c764160	bc834ff5-cc6c-4711-b85e-9870f290b91f	g.chr1:115222322A>G	uc001efe.1	-	7	859	c.775T>C	c.(775-777)TAT>CAT	p.Y259H	AMPD1_uc001eff.1_Missense_Mutation_p.Y255H	NM_000036	NP_000027	P23109	AMPD1_HUMAN	adenosine monophosphate deaminase 1 (isoform M)	259					purine base metabolic process|purine ribonucleoside monophosphate biosynthetic process|purine-containing compound salvage	cytosol	AMP deaminase activity|metal ion binding			ovary(2)|large_intestine(1)|skin(1)	4	all_epithelial(7;7.83e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)	Adenosine monophosphate(DB00131)	CGGTGGGTATAGGTCTTACTG	0.413000													3	114	---	---	---	---	0	0	0.004672	0	0
Unknown	0	broad.mit.edu	37	1	148882025	148882025	+	RNA	SNP	C	T	T	rs150449871	by1000genomes	TCGA-ET-A2N5-01A-11D-A18F-08	TCGA-ET-A2N5-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f94cb83-7a8f-4eda-8c8e-51811c764160	bc834ff5-cc6c-4711-b85e-9870f290b91f	g.chr1:148882025C>T	uc009wkv.1	+	3		c.246C>T								Homo sapiens cDNA, FLJ17483.																		TGTTTTCTAGCAGTGACAAAT	0.343000													5	84	---	---	---	---	0	0	0.001984	0	0
HRAS	3265	broad.mit.edu	37	11	533874	533874	+	Missense_Mutation	SNP	T	C	C	rs121913233		TCGA-ET-A2N5-01A-11D-A18F-08	TCGA-ET-A2N5-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f94cb83-7a8f-4eda-8c8e-51811c764160	bc834ff5-cc6c-4711-b85e-9870f290b91f	g.chr11:533874T>C	uc001lpv.2	-	3	370	c.182A>G	c.(181-183)CAG>CGG	p.Q61R	HRAS_uc010qvw.1_Missense_Mutation_p.Q61R|HRAS_uc010qvx.1_Missense_Mutation_p.Q61R|HRAS_uc010qvy.1_RNA	NM_005343	NP_005334	P01112	RASH_HUMAN	v-Ha-ras Harvey rat sarcoma viral oncogene	61	GTP.		Q -> L (in melanoma; strongly reduced GTP hydrolysis in the presence of RAF1; increases transformation of cultured cell lines).	Q->V: Strongly increased transformation of cultured cell lines.|Q->I: Moderately increased transformation of cultured cell lines.	activation of MAPKK activity|axon guidance|blood coagulation|cell cycle arrest|cellular senescence|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|mitotic cell cycle G1/S transition checkpoint|negative regulation of cell proliferation|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of DNA replication|positive regulation of epithelial cell proliferation|Ras protein signal transduction|synaptic transmission	cytosol|Golgi membrane|plasma membrane	GTP binding|GTPase activity|protein C-terminus binding	p.Q61R(112)|p.Q61L(93)|p.Q61K(39)|p.Q61H(20)|p.Q61P(3)|p.Q61Q(1)|p.Q61E(1)		urinary_tract(174)|thyroid(155)|skin(126)|upper_aerodigestive_tract(112)|soft_tissue(37)|prostate(29)|salivary_gland(24)|cervix(23)|stomach(14)|pituitary(10)|lung(9)|haematopoietic_and_lymphoid_tissue(9)|breast(6)|testis(5)|endometrium(4)|bone(3)|large_intestine(2)|oesophagus(2)|penis(2)|kidney(1)|adrenal_gland(1)|thymus(1)	749		all_cancers(49;4.37e-09)|all_epithelial(84;2.09e-06)|Breast(177;0.000162)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.0538)|all_lung(207;0.0713)		all cancers(45;7.63e-28)|Epithelial(43;7.29e-27)|OV - Ovarian serous cystadenocarcinoma(40;7.15e-21)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0375)|LUSC - Lung squamous cell carcinoma(625;0.0703)	Sulindac(DB00605)	GTACTCCTCCTGGCCGGCGGT	0.597000	Q61L(KNS62_LUNG)|Q61L(NCIH1915_LUNG)|Q61L(KYSE30_OESOPHAGUS)	6	Mis		infrequent sarcomas|rare other types	rhadomyosarcoma|ganglioneuroblastoma|bladder			Costello_syndrome	HNSCC(11;0.0054)			38	58	---	---	---	---	0	0	0.006230	0	0
PTPRB	5787	broad.mit.edu	37	12	70948968	70948968	+	Nonsense_Mutation	SNP	G	T	T			TCGA-ET-A2N5-01A-11D-A18F-08	TCGA-ET-A2N5-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f94cb83-7a8f-4eda-8c8e-51811c764160	bc834ff5-cc6c-4711-b85e-9870f290b91f	g.chr12:70948968G>T	uc001swb.3	-	18	4491	c.4461C>A	c.(4459-4461)TAC>TAA	p.Y1487*	PTPRB_uc010sto.1_Nonsense_Mutation_p.Y1397*|PTPRB_uc010stp.1_Nonsense_Mutation_p.Y1397*|PTPRB_uc001swc.3_Nonsense_Mutation_p.Y1705*|PTPRB_uc001swa.3_Nonsense_Mutation_p.Y1617*	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	1487	Fibronectin type-III 17.|Extracellular (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			CCACTGTGAAGTATTTCACAG	0.443000													28	46	---	---	---	---	4.74835e-14	1.19839e-13	0.010818	1	0
ZFP90	146198	broad.mit.edu	37	16	68598529	68598529	+	Missense_Mutation	SNP	A	T	T			TCGA-ET-A2N5-01A-11D-A18F-08	TCGA-ET-A2N5-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f94cb83-7a8f-4eda-8c8e-51811c764160	bc834ff5-cc6c-4711-b85e-9870f290b91f	g.chr16:68598529A>T	uc010cff.2	+	5	2131	c.1839A>T	c.(1837-1839)GAA>GAT	p.E613D	ZFP90_uc002ewb.2_3'UTR|ZFP90_uc002ewc.2_3'UTR|ZFP90_uc002ewd.2_Missense_Mutation_p.E613D|ZFP90_uc002ewe.2_Missense_Mutation_p.E613D	NM_133458	NP_597715	Q8TF47	ZFP90_HUMAN	zinc finger protein 90	613	C2H2-type 13.				positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.00233)|Epithelial(162;0.0184)|all cancers(182;0.0946)		CTTGTAAGGAATGTGGGAAAA	0.383000													52	69	---	---	---	---	0	0	0.014410	0	0
GPR179	440435	broad.mit.edu	37	17	36484690	36484690	+	Missense_Mutation	SNP	C	T	T			TCGA-ET-A2N5-01A-11D-A18F-08	TCGA-ET-A2N5-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f94cb83-7a8f-4eda-8c8e-51811c764160	bc834ff5-cc6c-4711-b85e-9870f290b91f	g.chr17:36484690C>T	uc002hpz.2	-	11	4783	c.4762G>A	c.(4762-4764)GCC>ACC	p.A1588T		NM_001004334	NP_001004334	Q6PRD1	GP179_HUMAN	GPR158-like 1 precursor	1588	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)	3	Breast(7;2.97e-12)	Breast(25;0.0101)|Ovarian(249;0.15)				TCTGTTTTGGCAGGTGTTGCT	0.502000													5	159	---	---	---	---	0	0	0.001168	0	0
ZNF491	126069	broad.mit.edu	37	19	11917928	11917928	+	Missense_Mutation	SNP	A	G	G			TCGA-ET-A2N5-01A-11D-A18F-08	TCGA-ET-A2N5-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f94cb83-7a8f-4eda-8c8e-51811c764160	bc834ff5-cc6c-4711-b85e-9870f290b91f	g.chr19:11917928A>G	uc002mso.1	+	3	1445	c.1160A>G	c.(1159-1161)CAT>CGT	p.H387R		NM_152356	NP_689569	Q8N8L2	ZN491_HUMAN	zinc finger protein 491	387	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						GAATGTAAGCATTGTGGGAAA	0.393000													27	36	---	---	---	---	0	0	0.004656	0	0
ASXL1	171023	broad.mit.edu	37	20	31024411	31024411	+	Missense_Mutation	SNP	G	A	A			TCGA-ET-A2N5-01A-11D-A18F-08	TCGA-ET-A2N5-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f94cb83-7a8f-4eda-8c8e-51811c764160	bc834ff5-cc6c-4711-b85e-9870f290b91f	g.chr20:31024411G>A	uc002wxs.2	+	12	4322	c.3896G>A	c.(3895-3897)GGC>GAC	p.G1299D	ASXL1_uc010geb.2_Missense_Mutation_p.G1190D	NM_015338	NP_056153	Q8IXJ9	ASXL1_HUMAN	additional sex combs like 1 isoform 1	1299					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	PR-DUB complex	metal ion binding|protein binding			haematopoietic_and_lymphoid_tissue(239)|large_intestine(6)|central_nervous_system(2)|ovary(1)	248						AATGTTACAGGCCAAGGGAAG	0.557000			F|N|Mis		MDS|CMML								27	48	---	---	---	---	0	0	0.005443	0	0
CEP250	11190	broad.mit.edu	37	20	34087927	34087927	+	Missense_Mutation	SNP	C	T	T			TCGA-ET-A2N5-01A-11D-A18F-08	TCGA-ET-A2N5-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f94cb83-7a8f-4eda-8c8e-51811c764160	bc834ff5-cc6c-4711-b85e-9870f290b91f	g.chr20:34087927C>T	uc002xcm.2	+	29	4498	c.3827C>T	c.(3826-3828)ACT>ATT	p.T1276I	CEP250_uc010zve.1_Missense_Mutation_p.T644I	NM_007186	NP_009117	Q9BV73	CP250_HUMAN	centrosomal protein 2	1276	Gln/Glu-rich.|Potential.				centriole-centriole cohesion|G2/M transition of mitotic cell cycle|protein localization|regulation of centriole-centriole cohesion	centriole|cilium|cytosol|microtubule basal body|perinuclear region of cytoplasm|protein complex	protein C-terminus binding|protein kinase binding			ovary(4)|central_nervous_system(1)	5	Lung NSC(9;0.00156)|all_lung(11;0.00243)		BRCA - Breast invasive adenocarcinoma(18;0.0106)			CTAACTGATACTGAGGCTGAG	0.512000													45	65	---	---	---	---	0	0	0.013114	0	0
EPHA6	285220	broad.mit.edu	37	3	97467477	97467477	+	Missense_Mutation	SNP	A	G	G			TCGA-ET-A2N5-01A-11D-A18F-08	TCGA-ET-A2N5-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f94cb83-7a8f-4eda-8c8e-51811c764160	bc834ff5-cc6c-4711-b85e-9870f290b91f	g.chr3:97467477A>G	uc010how.1	+	18	3368	c.3325A>G	c.(3325-3327)ATA>GTA	p.I1109V		NM_001080448	NP_001073917	Q9UF33	EPHA6_HUMAN	EPH receptor A6 isoform a	1014	SAM.|Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			stomach(5)|lung(4)|central_nervous_system(3)|breast(1)|skin(1)|ovary(1)|kidney(1)	16						CCAGAGACGAATAGTCAGCAG	0.318000													3	31	---	---	---	---	0	0	0.014758	0	0
LOC729375	729375	broad.mit.edu	37	3	129821725	129821725	+	RNA	SNP	G	C	C			TCGA-ET-A2N5-01A-11D-A18F-08	TCGA-ET-A2N5-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f94cb83-7a8f-4eda-8c8e-51811c764160	bc834ff5-cc6c-4711-b85e-9870f290b91f	g.chr3:129821725G>C	uc003ene.2	-	2		c.191C>G			LOC729375_uc011ble.1_RNA					Homo sapiens cDNA FLJ42457 fis, clone BRACE2018700.												0						CCCCGACCAGGGACACGATGG	0.597000													4	64	---	---	---	---	0	0	0.009096	0	0
CLCN2	1181	broad.mit.edu	37	3	184071569	184071569	+	Missense_Mutation	SNP	C	T	T			TCGA-ET-A2N5-01A-11D-A18F-08	TCGA-ET-A2N5-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f94cb83-7a8f-4eda-8c8e-51811c764160	bc834ff5-cc6c-4711-b85e-9870f290b91f	g.chr3:184071569C>T	uc003foi.2	-	16	1860	c.1736G>A	c.(1735-1737)CGT>CAT	p.R579H	CLCN2_uc003foh.2_Missense_Mutation_p.R103H|CLCN2_uc010hya.1_Missense_Mutation_p.R562H|CLCN2_uc011brl.1_Missense_Mutation_p.R579H|CLCN2_uc011brm.1_Missense_Mutation_p.R535H	NM_004366	NP_004357	P51788	CLCN2_HUMAN	chloride channel 2	579	Cytoplasmic (By similarity).					chloride channel complex	voltage-gated chloride channel activity				0	all_cancers(143;6.66e-11)|Ovarian(172;0.0339)		Epithelial(37;2.22e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)		Lubiprostone(DB01046)	GTCCTCCACACGCACCCGGTA	0.642000													3	11	---	---	---	---	0	0	0.004672	0	0
WHSC2	7469	broad.mit.edu	37	4	1985181	1985181	+	Silent	SNP	C	T	T			TCGA-ET-A2N5-01A-11D-A18F-08	TCGA-ET-A2N5-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f94cb83-7a8f-4eda-8c8e-51811c764160	bc834ff5-cc6c-4711-b85e-9870f290b91f	g.chr4:1985181C>T	uc003gem.2	-	11	1725	c.1485G>A	c.(1483-1485)GAG>GAA	p.E495E	WHSC2_uc003gek.2_Silent_p.E221E|WHSC2_uc003gel.2_Silent_p.E409E|WHSC2_uc003gen.2_Silent_p.E349E	NM_005663	NP_005654	Q9H3P2	NELFA_HUMAN	Wolf-Hirschhorn syndrome candidate 2 protein	484					multicellular organismal development|positive regulation of viral transcription|regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|viral reproduction	nucleoplasm				skin(1)	1			OV - Ovarian serous cystadenocarcinoma(23;0.0155)			CCTCCGTGTGCTCGCTCAGCT	0.642000													4	150	---	---	---	---	0	0	0.009096	0	0
BCAP31	10134	broad.mit.edu	37	X	152986357	152986357	+	Missense_Mutation	SNP	G	A	A			TCGA-ET-A2N5-01A-11D-A18F-08	TCGA-ET-A2N5-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f94cb83-7a8f-4eda-8c8e-51811c764160	bc834ff5-cc6c-4711-b85e-9870f290b91f	g.chrX:152986357G>A	uc011myz.1	-	3	319	c.163C>T	c.(163-165)CTC>TTC	p.L55F	BCAP31_uc011myy.1_5'UTR|BCAP31_uc004fid.2_Missense_Mutation_p.L122F|BCAP31_uc011mza.1_Missense_Mutation_p.L55F|BCAP31_uc004fie.2_Missense_Mutation_p.L55F	NM_001139441	NP_001132913	P51572	BAP31_HUMAN	B-cell receptor-associated protein 31 isoform b	55	Helical; (Potential).				cellular component disassembly involved in apoptosis|immune response|intracellular protein transport|vesicle-mediated transport	cytosol|endoplasmic reticulum membrane|ER-Golgi intermediate compartment membrane|integral to plasma membrane	receptor binding				0	all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					ATGACAATGAGAACCACAAAG	0.502000													7	70	---	---	---	---	0	0	0.001984	0	0
Unknown	0	broad.mit.edu	37	11	112332121	112332121	+	IGR	DEL	T	-	-			TCGA-ET-A2N5-01A-11D-A18F-08	TCGA-ET-A2N5-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f94cb83-7a8f-4eda-8c8e-51811c764160	bc834ff5-cc6c-4711-b85e-9870f290b91f	g.chr11:112332121delT								PTS (191444 upstream) : NCAM1 (499874 downstream)																							TGATTTTATGTTTTTTTTTTT	0.378													2	4	---	---	---	---					
NAV3	89795	broad.mit.edu	37	12	78224975	78224976	+	5'Flank	INS	-	AG	AG	rs77759134	by1000genomes	TCGA-ET-A2N5-01A-11D-A18F-08	TCGA-ET-A2N5-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f94cb83-7a8f-4eda-8c8e-51811c764160	bc834ff5-cc6c-4711-b85e-9870f290b91f	g.chr12:78224975_78224976insAG	uc001syp.2	+						NAV3_uc001syo.2_5'Flank	NM_014903	NP_055718	Q8IVL0	NAV3_HUMAN	neuron navigator 3							nuclear outer membrane	ATP binding|nucleoside-triphosphatase activity			large_intestine(6)|ovary(5)|lung(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	17						gagagagagacagagagagaga	0.208										HNSCC(70;0.22)			4	8	---	---	---	---					
Unknown	0	broad.mit.edu	37	15	34808366	34808367	+	IGR	INS	-	TT	TT	rs35361274	by1000genomes	TCGA-ET-A2N5-01A-11D-A18F-08	TCGA-ET-A2N5-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f94cb83-7a8f-4eda-8c8e-51811c764160	bc834ff5-cc6c-4711-b85e-9870f290b91f	g.chr15:34808366_34808367insTT								GOLGA8A (126365 upstream) : GOLGA8B (9118 downstream)																							TTTTTTTTTTAAAGCACCAACC	0.431													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	21549913	21549914	+	IGR	DEL	CT	-	-	rs112001794		TCGA-ET-A2N5-01A-11D-A18F-08	TCGA-ET-A2N5-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f94cb83-7a8f-4eda-8c8e-51811c764160	bc834ff5-cc6c-4711-b85e-9870f290b91f	g.chr17:21549913_21549914delCT								C17orf51 (72182 upstream) : FAM27L (275456 downstream)																							TCAATGAAACCTTCTGTGGCAG	0.515													3	3	---	---	---	---					
CCDC137	339230	broad.mit.edu	37	17	79639617	79639619	+	In_Frame_Del	DEL	GGA	-	-	rs34191669		TCGA-ET-A2N5-01A-11D-A18F-08	TCGA-ET-A2N5-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f94cb83-7a8f-4eda-8c8e-51811c764160	bc834ff5-cc6c-4711-b85e-9870f290b91f	g.chr17:79639617_79639619delGGA	uc002kbc.3	+	6	789_791	c.753_755delGGA	c.(751-756)GTGGAG>GTG	p.E254del	CCDC137_uc002kbd.2_RNA	NM_199287	NP_954981	Q6PK04	CC137_HUMAN	coiled-coil domain containing 137	254	Potential.									central_nervous_system(1)	1	all_neural(118;0.0878)|all_lung(278;0.23)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0101)|OV - Ovarian serous cystadenocarcinoma(97;0.0739)			AGCGGATTGTGGAGGAGGAGAGA	0.670													4	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	21145547	21145547	+	IGR	DEL	A	-	-			TCGA-ET-A2N5-01A-11D-A18F-08	TCGA-ET-A2N5-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f94cb83-7a8f-4eda-8c8e-51811c764160	bc834ff5-cc6c-4711-b85e-9870f290b91f	g.chr19:21145547delA								ZNF85 (12046 upstream) : ZNF430 (57950 downstream)																							AAGAGGAAGTAAAAGGACTAC	0.522													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	3	27047736	27047737	+	IGR	INS	-	T	T	rs113724835		TCGA-ET-A2N5-01A-11D-A18F-08	TCGA-ET-A2N5-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f94cb83-7a8f-4eda-8c8e-51811c764160	bc834ff5-cc6c-4711-b85e-9870f290b91f	g.chr3:27047736_27047737insT								LRRC3B (295473 upstream) : NEK10 (104658 downstream)																							gggggaacctgttttttttttt	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	3	141189385	141189389	+	IGR	DEL	TTTTT	-	-	rs71629505		TCGA-ET-A2N5-01A-11D-A18F-08	TCGA-ET-A2N5-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f94cb83-7a8f-4eda-8c8e-51811c764160	bc834ff5-cc6c-4711-b85e-9870f290b91f	g.chr3:141189385_141189389delTTTTT								ZBTB38 (20760 upstream) : RASA2 (16537 downstream)																							ttcttttttcttttttttttttttt	0.190													3	5	---	---	---	---					
SOX2	6657	broad.mit.edu	37	3	181430265	181430265	+	Frame_Shift_Del	DEL	C	-	-			TCGA-ET-A2N5-01A-11D-A18F-08	TCGA-ET-A2N5-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f94cb83-7a8f-4eda-8c8e-51811c764160	bc834ff5-cc6c-4711-b85e-9870f290b91f	g.chr3:181430265delC	uc003fkx.2	+	1	544	c.117delC	c.(115-117)GACfs	p.D39fs	SOX2OT_uc003fkv.2_Intron|SOX2OT_uc003fkw.3_Intron	NM_003106	NP_003097	P48431	SOX2_HUMAN	sex-determining region Y-box 2	39					cell cycle arrest|chromatin organization|eye development|glial cell fate commitment|inner ear development|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of epithelial cell proliferation|negative regulation of neuron differentiation|osteoblast differentiation|pituitary gland development|positive regulation of MAPKKK cascade|positive regulation of transcription from RNA polymerase II promoter|regulation of caspase activity|response to growth factor stimulus|response to wounding|somatic stem cell maintenance	cytosol|transcription factor complex	miRNA binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding				0	all_cancers(143;1.22e-16)|Ovarian(172;0.0283)		all cancers(12;1.82e-48)|Epithelial(37;9.85e-40)|OV - Ovarian serous cystadenocarcinoma(80;7.37e-23)|Lung(8;2.01e-21)|GBM - Glioblastoma multiforme(1;2.13e-08)			ACAGCCCGGACCGCGTCAAGC	0.687			A		NSCLC|oesophageal squamous carcinoma		MICROPHTHALMIA AND ESOPHAGEAL ATRESIA SYNDROME						19	12	---	---	---	---					
Unknown	0	broad.mit.edu	37	5	138873859	138873862	+	IGR	DEL	AAAT	-	-			TCGA-ET-A2N5-01A-11D-A18F-08	TCGA-ET-A2N5-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f94cb83-7a8f-4eda-8c8e-51811c764160	bc834ff5-cc6c-4711-b85e-9870f290b91f	g.chr5:138873859_138873862delAAAT								TMEM173 (11567 upstream) : UBE2D2 (66889 downstream)																							tctgtctcaaaaataaataaataa	0.201													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	131438391	131438392	+	IGR	INS	-	T	T	rs77696576		TCGA-ET-A2N5-01A-11D-A18F-08	TCGA-ET-A2N5-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f94cb83-7a8f-4eda-8c8e-51811c764160	bc834ff5-cc6c-4711-b85e-9870f290b91f	g.chr7:131438391_131438392insT								PODXL (197015 upstream) : PLXNA4 (369700 downstream)																							GGCAAGCTTTCTTTTTTTTTTT	0.173													5	1	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	68455229	68455230	+	IGR	INS	-	AC	AC			TCGA-ET-A2N5-01A-11D-A18F-08	TCGA-ET-A2N5-11B-11D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	2f94cb83-7a8f-4eda-8c8e-51811c764160	bc834ff5-cc6c-4711-b85e-9870f290b91f	g.chr9:68455229_68455230insAC								FAM27B (661040 upstream) : MIR1299 (547009 downstream)																							GGGAGACTTCTGTGCAGAGGCT	0.584													4	9	---	---	---	---					
