Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
C1orf210	149466	broad.mit.edu	37	1	43748745	43748745	+	Missense_Mutation	SNP	G	A	A			TCGA-FY-A3NM-01A-11D-A21A-08	TCGA-FY-A3NM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	7a1ddc14-ba55-4811-98e4-4f15657410e6	7b5118e4-3bde-4fce-a1a3-81798b30420f	g.chr1:43748745G>A	uc001cit.3	-	3	287	c.53C>T	c.(52-54)TCT>TTT	p.S18F		NM_182517	NP_872323	Q8IVY1	CA210_HUMAN	hypothetical protein LOC149466	18	Extracellular (Potential).					integral to membrane					0	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				GGCCACAGCAGACGCTGTGGG	0.627000													5	21	---	---	---	---	0	0	0.001984	0	0
CENPF	1063	broad.mit.edu	37	1	214820611	214820611	+	Silent	SNP	G	A	A			TCGA-FY-A3NM-01A-11D-A21A-08	TCGA-FY-A3NM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	7a1ddc14-ba55-4811-98e4-4f15657410e6	7b5118e4-3bde-4fce-a1a3-81798b30420f	g.chr1:214820611G>A	uc001hkm.2	+	13	7872	c.7698G>A	c.(7696-7698)GAG>GAA	p.E2566E		NM_016343	NP_057427	P49454	CENPF_HUMAN	centromere protein F	2662	Potential.|Sufficient for self-association.|Sufficient for centromere localization.				cell differentiation|cell division|cell proliferation|DNA replication|G2 phase of mitotic cell cycle|kinetochore assembly|metaphase plate congression|mitotic cell cycle spindle assembly checkpoint|mitotic prometaphase|muscle organ development|negative regulation of transcription, DNA-dependent|protein transport|regulation of G2/M transition of mitotic cell cycle|regulation of striated muscle tissue development|response to drug	condensed chromosome outer kinetochore|cytosol|midbody|nuclear envelope|nuclear matrix|perinuclear region of cytoplasm|spindle pole	chromatin binding|dynein binding|protein C-terminus binding|protein homodimerization activity|transcription factor binding			ovary(6)|central_nervous_system(4)|large_intestine(2)|skin(1)	13				all cancers(67;0.00836)|OV - Ovarian serous cystadenocarcinoma(81;0.00855)|GBM - Glioblastoma multiforme(131;0.0694)|Epithelial(68;0.0833)		TGGAATTGGAGCAGAAGATCC	0.433000													3	76	---	---	---	---	0	0	0.009096	0	0
ZNF678	339500	broad.mit.edu	37	1	227843206	227843206	+	Missense_Mutation	SNP	C	T	T			TCGA-FY-A3NM-01A-11D-A21A-08	TCGA-FY-A3NM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	7a1ddc14-ba55-4811-98e4-4f15657410e6	7b5118e4-3bde-4fce-a1a3-81798b30420f	g.chr1:227843206C>T	uc001hqw.1	+	4	1600	c.1255C>T	c.(1255-1257)CAC>TAC	p.H419Y	ZNF678_uc009xet.1_Intron|ZNF678_uc009xeu.1_Intron	NM_178549	NP_848644	F5GXA7	F5GXA7_HUMAN	zinc finger protein 678	474					regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding			pancreas(1)	1		Prostate(94;0.0885)				ACAGTGCTCTCACCTAACTAG	0.368000													3	57	---	---	---	---	0	0	0.004672	0	0
LOC650623	650623	broad.mit.edu	37	10	81443821	81443821	+	RNA	SNP	C	G	G	rs150975459	by1000genomes	TCGA-FY-A3NM-01A-11D-A21A-08	TCGA-FY-A3NM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	7a1ddc14-ba55-4811-98e4-4f15657410e6	7b5118e4-3bde-4fce-a1a3-81798b30420f	g.chr10:81443821C>G	uc010qlu.1	+	1		c.1091C>G				NR_027512				Homo sapiens BEN domain containing 3 pseudogene (LOC650623), non-coding RNA.												0						GCAGCACCATCGCCTCAGACC	0.612000													3	33	---	---	---	---	0	0	0.021553	0	0
SLC26A10	65012	broad.mit.edu	37	12	58016597	58016597	+	Silent	SNP	G	T	T			TCGA-FY-A3NM-01A-11D-A21A-08	TCGA-FY-A3NM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	7a1ddc14-ba55-4811-98e4-4f15657410e6	7b5118e4-3bde-4fce-a1a3-81798b30420f	g.chr12:58016597G>T	uc001spe.2	+	6	1130	c.819G>T	c.(817-819)CTG>CTT	p.L273L	SLC26A10_uc001spf.2_RNA|SLC26A10_uc009zpz.1_5'Flank	NM_133489	NP_597996	Q8NG04	S2610_HUMAN	solute carrier family 26, member 10	273						integral to membrane	antiporter activity			large_intestine(1)|central_nervous_system(1)	2	Melanoma(17;0.122)					TCCCCAACCTGGCTGAGCTGC	0.567000													6	155	---	---	---	---	3.09899e-07	3.56853e-07	0.004482	1	0
KCNK10	54207	broad.mit.edu	37	14	88658695	88658695	+	Silent	SNP	G	A	A			TCGA-FY-A3NM-01A-11D-A21A-08	TCGA-FY-A3NM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	7a1ddc14-ba55-4811-98e4-4f15657410e6	7b5118e4-3bde-4fce-a1a3-81798b30420f	g.chr14:88658695G>A	uc001xwo.2	-	5	1183	c.726C>T	c.(724-726)GCC>GCT	p.A242A	KCNK10_uc001xwm.2_Silent_p.A247A|KCNK10_uc001xwn.2_Silent_p.A247A	NM_021161	NP_066984	P57789	KCNKA_HUMAN	potassium channel, subfamily K, member 10	242	Helical; (Potential).				signal transduction	integral to membrane	potassium channel activity|voltage-gated ion channel activity			ovary(2)|skin(2)|pancreas(1)	5						CAATGCAGCCGGCCAAGATGA	0.498000													10	293	---	---	---	---	0	0	0.020292	0	0
GABRB3	2562	broad.mit.edu	37	15	26806094	26806094	+	Missense_Mutation	SNP	C	G	G			TCGA-FY-A3NM-01A-11D-A21A-08	TCGA-FY-A3NM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	7a1ddc14-ba55-4811-98e4-4f15657410e6	7b5118e4-3bde-4fce-a1a3-81798b30420f	g.chr15:26806094C>G	uc001zaz.2	-	8	1207	c.1065G>C	c.(1063-1065)AAG>AAC	p.K355N	GABRB3_uc010uae.1_Missense_Mutation_p.K270N|GABRB3_uc001zba.2_Missense_Mutation_p.K355N|GABRB3_uc001zbb.2_Missense_Mutation_p.K411N	NM_000814	NP_000805	P28472	GBRB3_HUMAN	gamma-aminobutyric acid (GABA) A receptor, beta	355	Cytoplasmic (Probable).				synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			upper_aerodigestive_tract(1)|ovary(1)|lung(1)|liver(1)|central_nervous_system(1)	5		all_cancers(20;1.89e-22)|all_lung(180;6.35e-15)|Breast(32;0.000279)|Colorectal(260;0.232)		all cancers(64;1.46e-07)|Epithelial(43;2.89e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0251)|COAD - Colon adenocarcinoma(236;0.235)|Lung(196;0.243)	Ethchlorvynol(DB00189)|Flurazepam(DB00690)|Lorazepam(DB00186)|Midazolam(DB00683)	TGCTTTCGCTCTTTGAACGGT	0.473000													3	178	---	---	---	---	0	0	0.009096	0	0
TJP1	7082	broad.mit.edu	37	15	30001016	30001016	+	Missense_Mutation	SNP	T	C	C			TCGA-FY-A3NM-01A-11D-A21A-08	TCGA-FY-A3NM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	7a1ddc14-ba55-4811-98e4-4f15657410e6	7b5118e4-3bde-4fce-a1a3-81798b30420f	g.chr15:30001016T>C	uc001zcr.2	-	25	5072	c.4597A>G	c.(4597-4599)ACA>GCA	p.T1533A	TJP1_uc010azl.2_Missense_Mutation_p.T1521A|TJP1_uc001zcq.2_Missense_Mutation_p.T1457A|TJP1_uc001zcs.2_Missense_Mutation_p.T1453A	NM_003257	NP_003248	Q07157	ZO1_HUMAN	tight junction protein 1 isoform a	1533					cell-cell junction assembly|cellular component disassembly involved in apoptosis	basolateral plasma membrane|cell-cell adherens junction|Golgi apparatus|tight junction				ovary(4)|central_nervous_system(1)|pancreas(1)	6		all_lung(180;7.48e-11)|Breast(32;0.000153)		all cancers(64;3.29e-10)|Epithelial(43;5.34e-09)|BRCA - Breast invasive adenocarcinoma(123;0.0034)|GBM - Glioblastoma multiforme(186;0.0139)|Lung(196;0.186)		GCAGAACTTGTATATGGTTTT	0.403000													5	305	---	---	---	---	0	0	0.001984	0	0
DPP8	54878	broad.mit.edu	37	15	65739246	65739246	+	Silent	SNP	A	C	C			TCGA-FY-A3NM-01A-11D-A21A-08	TCGA-FY-A3NM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	7a1ddc14-ba55-4811-98e4-4f15657410e6	7b5118e4-3bde-4fce-a1a3-81798b30420f	g.chr15:65739246A>C	uc002aov.2	-	20	4251	c.2673T>G	c.(2671-2673)CGT>CGG	p.R891R	DPP8_uc002aow.2_Silent_p.R891R|DPP8_uc010uiv.1_RNA|DPP8_uc002aox.2_Silent_p.R875R|DPP8_uc002aoy.2_Silent_p.R840R|DPP8_uc002aoz.2_Silent_p.R775R|DPP8_uc010bhj.2_Silent_p.R891R|DPP8_uc002apa.2_Silent_p.R684R|DPP8_uc010bhi.2_Silent_p.R194R	NM_130434	NP_569118	Q6V1X1	DPP8_HUMAN	dipeptidyl peptidase 8 isoform 1	891					immune response|proteolysis	cytoplasm|membrane|nucleus	aminopeptidase activity|dipeptidyl-peptidase activity|serine-type peptidase activity			ovary(1)	1						GAGCAGCAATACGTGATCCAA	0.388000													53	61	---	---	---	---	0	0	0.014410	0	0
C15orf44	81556	broad.mit.edu	37	15	65877142	65877142	+	Missense_Mutation	SNP	T	C	C			TCGA-FY-A3NM-01A-11D-A21A-08	TCGA-FY-A3NM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	7a1ddc14-ba55-4811-98e4-4f15657410e6	7b5118e4-3bde-4fce-a1a3-81798b30420f	g.chr15:65877142T>C	uc002apd.2	-	10	1541	c.1205A>G	c.(1204-1206)AAT>AGT	p.N402S	C15orf44_uc010uix.1_Missense_Mutation_p.N438S|C15orf44_uc010uiz.1_Missense_Mutation_p.N366S|C15orf44_uc010uja.1_Missense_Mutation_p.N352S|C15orf44_uc010ujb.1_Missense_Mutation_p.N323S|C15orf44_uc002ape.3_Missense_Mutation_p.N402S|C15orf44_uc010uiy.1_Missense_Mutation_p.N323S	NM_030800	NP_110427	Q96SY0	CO044_HUMAN	hypothetical protein LOC81556 isoform 2	402										ovary(1)	1						GACAGTCACATTCTGGGCATA	0.468000													14	26	---	---	---	---	0	0	0.004990	0	0
ZNF493	284443	broad.mit.edu	37	19	21606544	21606544	+	Silent	SNP	C	T	T			TCGA-FY-A3NM-01A-11D-A21A-08	TCGA-FY-A3NM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	7a1ddc14-ba55-4811-98e4-4f15657410e6	7b5118e4-3bde-4fce-a1a3-81798b30420f	g.chr19:21606544C>T	uc002npx.2	+	2	979	c.699C>T	c.(697-699)TCC>TCT	p.S233S	ZNF493_uc002npw.2_Silent_p.S361S|ZNF493_uc002npy.2_Silent_p.S233S	NM_175910	NP_787106	Q6ZR52	ZN493_HUMAN	zinc finger protein 493 isoform 1	233	C2H2-type 8; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						ATAAGGAGTCCTCACACCTTA	0.358000													4	55	---	---	---	---	0	0	0.021553	0	0
ZNF845	91664	broad.mit.edu	37	19	53855364	53855365	+	Missense_Mutation	DNP	CA	TG	TG			TCGA-FY-A3NM-01A-11D-A21A-08	TCGA-FY-A3NM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	7a1ddc14-ba55-4811-98e4-4f15657410e6	7b5118e4-3bde-4fce-a1a3-81798b30420f	g.chr19:53855364_53855365CA>TG	uc010ydv.1	+	4	1553_1554	c.1436_1437CA>TG	c.(1435-1437)ACA>ATG	p.T479M	ZNF845_uc010ydw.1_Missense_Mutation_p.T479M	NM_138374	NP_612383	Q96IR2	ZN845_HUMAN	zinc finger protein 845	479	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TTCAGTCAGACATCATCCCTTG	0.381000													5	101	---	---	---	---	0	0	0.004672	0	0
DNMT3A	1788	broad.mit.edu	37	2	25497865	25497865	+	Missense_Mutation	SNP	G	A	A			TCGA-FY-A3NM-01A-11D-A21A-08	TCGA-FY-A3NM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	7a1ddc14-ba55-4811-98e4-4f15657410e6	7b5118e4-3bde-4fce-a1a3-81798b30420f	g.chr2:25497865G>A	uc002rgc.2	-	6	841	c.584C>T	c.(583-585)CCC>CTC	p.P195L	DNMT3A_uc002rgd.2_Missense_Mutation_p.P195L|DNMT3A_uc010eyi.2_RNA	NM_022552	NP_072046	Q9Y6K1	DNM3A_HUMAN	DNA cytosine methyltransferase 3 alpha isoform	195					regulation of gene expression by genetic imprinting	cytoplasm|euchromatin|nuclear matrix	DNA (cytosine-5-)-methyltransferase activity|DNA binding|metal ion binding|protein binding			haematopoietic_and_lymphoid_tissue(133)|lung(4)|ovary(3)	140	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GATGTAGTAGGGGTCCCCCGC	0.701000			Mis|F|N|S		AML								8	16	---	---	---	---	0	0	0.008291	0	0
CSNK2A1	1457	broad.mit.edu	37	20	470440	470440	+	Missense_Mutation	SNP	T	C	C	rs61730060		TCGA-FY-A3NM-01A-11D-A21A-08	TCGA-FY-A3NM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	7a1ddc14-ba55-4811-98e4-4f15657410e6	7b5118e4-3bde-4fce-a1a3-81798b30420f	g.chr20:470440T>C	uc002wdw.1	-	10	1100	c.707A>G	c.(706-708)CAT>CGT	p.H236R	CSNK2A1_uc002wdx.1_Missense_Mutation_p.H236R|CSNK2A1_uc002wdy.1_Missense_Mutation_p.H100R	NM_177559	NP_808227	P68400	CSK21_HUMAN	casein kinase II alpha 1 subunit isoform a	236	Protein kinase.				axon guidance|Wnt receptor signaling pathway	cytosol|NuRD complex|plasma membrane|Sin3 complex	ATP binding|protein N-terminus binding|protein serine/threonine kinase activity			ovary(1)	1		Breast(17;0.231)	OV - Ovarian serous cystadenocarcinoma(29;0.0969)			ATAATTGTCATGTCCATGGAA	0.373000													3	56	---	---	---	---	0	0	0.004672	0	0
FRG1B	284802	broad.mit.edu	37	20	29625947	29625947	+	Missense_Mutation	SNP	T	C	C			TCGA-FY-A3NM-01A-11D-A21A-08	TCGA-FY-A3NM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	7a1ddc14-ba55-4811-98e4-4f15657410e6	7b5118e4-3bde-4fce-a1a3-81798b30420f	g.chr20:29625947T>C	uc010ztl.1	+	2	133	c.101T>C	c.(100-102)ATT>ACT	p.I34T	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Intron					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						TCAGATGCAATTGGACCAAGA	0.343000													5	64	---	---	---	---	0	0	0.014758	0	0
FRG1B	284802	broad.mit.edu	37	20	29628300	29628300	+	Missense_Mutation	SNP	G	A	A			TCGA-FY-A3NM-01A-11D-A21A-08	TCGA-FY-A3NM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	7a1ddc14-ba55-4811-98e4-4f15657410e6	7b5118e4-3bde-4fce-a1a3-81798b30420f	g.chr20:29628300G>A	uc010ztl.1	+	3	244	c.212G>A	c.(211-213)AGT>AAT	p.S71N	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Missense_Mutation_p.S23N					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						GAAGCAAAAAGTAAAACAGCA	0.358000													4	83	---	---	---	---	0	0	0.021553	0	0
C3orf19	51244	broad.mit.edu	37	3	14706561	14706561	+	Missense_Mutation	SNP	G	A	A			TCGA-FY-A3NM-01A-11D-A21A-08	TCGA-FY-A3NM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	7a1ddc14-ba55-4811-98e4-4f15657410e6	7b5118e4-3bde-4fce-a1a3-81798b30420f	g.chr3:14706561G>A	uc003byw.2	+	6	603	c.512G>A	c.(511-513)CGT>CAT	p.R171H	C3orf19_uc010hei.1_Missense_Mutation_p.R171H|C3orf19_uc010hej.2_Missense_Mutation_p.R76H	NM_016474	NP_057558	Q6PII3	CC019_HUMAN	hypothetical protein LOC51244	171											0						TCTTTGGGGCGTTCCCGGCGC	0.473000													4	173	---	---	---	---	0	0	0.021553	0	0
CNGA1	1259	broad.mit.edu	37	4	47939187	47939187	+	Missense_Mutation	SNP	A	G	G			TCGA-FY-A3NM-01A-11D-A21A-08	TCGA-FY-A3NM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	7a1ddc14-ba55-4811-98e4-4f15657410e6	7b5118e4-3bde-4fce-a1a3-81798b30420f	g.chr4:47939187A>G	uc003gxt.3	-	11	1590	c.1324T>C	c.(1324-1326)TGG>CGG	p.W442R	uc003gxr.1_Intron|CNGA1_uc003gxu.2_Missense_Mutation_p.W511R	NM_000087	NP_000078	P29973	CNGA1_HUMAN	cyclic nucleotide gated channel alpha 1 isoform	442	Extracellular (Potential).				response to stimulus|visual perception	integral to plasma membrane	cGMP binding|ion channel activity			ovary(2)	2						TTGTTGGTCCACAGGTAGTCA	0.328000													5	122	---	---	---	---	0	0	0.021553	0	0
NPFFR2	10886	broad.mit.edu	37	4	73013276	73013276	+	Missense_Mutation	SNP	A	G	G			TCGA-FY-A3NM-01A-11D-A21A-08	TCGA-FY-A3NM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	7a1ddc14-ba55-4811-98e4-4f15657410e6	7b5118e4-3bde-4fce-a1a3-81798b30420f	g.chr4:73013276A>G	uc003hgg.2	+	4	1414	c.1316A>G	c.(1315-1317)AAC>AGC	p.N439S	NPFFR2_uc010iig.1_Missense_Mutation_p.N221S|NPFFR2_uc003hgi.2_Missense_Mutation_p.N340S|NPFFR2_uc003hgh.2_Missense_Mutation_p.N337S|NPFFR2_uc003hgj.2_RNA	NM_004885	NP_004876	Q9Y5X5	NPFF2_HUMAN	neuropeptide FF receptor 2 isoform 1	439	Cytoplasmic (Potential).				detection of abiotic stimulus	actin cytoskeleton|integral to plasma membrane	neuropeptide receptor activity			ovary(2)|central_nervous_system(1)	3			Lung(101;0.0935)|LUSC - Lung squamous cell carcinoma(112;0.138)			GGTTTCTTCAACGAGAATTTC	0.453000													24	65	---	---	---	---	0	0	0.027356	0	0
SLC26A8	116369	broad.mit.edu	37	6	35923195	35923195	+	Missense_Mutation	SNP	C	G	G			TCGA-FY-A3NM-01A-11D-A21A-08	TCGA-FY-A3NM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	7a1ddc14-ba55-4811-98e4-4f15657410e6	7b5118e4-3bde-4fce-a1a3-81798b30420f	g.chr6:35923195C>G	uc003olm.2	-	17	2077	c.1966G>C	c.(1966-1968)GCA>CCA	p.A656P	SLC26A8_uc010jwa.2_RNA|SLC26A8_uc003olk.2_Missense_Mutation_p.A238P|SLC26A8_uc003oln.2_Missense_Mutation_p.A656P|SLC26A8_uc003oll.2_Missense_Mutation_p.A551P	NM_052961	NP_443193	Q96RN1	S26A8_HUMAN	solute carrier family 26, member 8 isoform a	656	STAS.|Cytoplasmic (Potential).				cell differentiation|meiosis|multicellular organismal development|spermatogenesis	integral to membrane|plasma membrane	anion:anion antiporter activity|chloride channel activity|oxalate transmembrane transporter activity|protein binding|sulfate transmembrane transporter activity			ovary(2)	2						TCTTCGGATGCAGTTTGGCTT	0.443000													49	75	---	---	---	---	0	0	0.014410	0	0
HEY2	23493	broad.mit.edu	37	6	126080274	126080274	+	Missense_Mutation	SNP	G	A	A			TCGA-FY-A3NM-01A-11D-A21A-08	TCGA-FY-A3NM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	7a1ddc14-ba55-4811-98e4-4f15657410e6	7b5118e4-3bde-4fce-a1a3-81798b30420f	g.chr6:126080274G>A	uc003qad.2	+	5	531	c.340G>A	c.(340-342)GCA>ACA	p.A114T	HEY2_uc011ebr.1_Missense_Mutation_p.A68T	NM_012259	NP_036391	Q9UBP5	HEY2_HUMAN	hairy/enhancer-of-split related with YRPW motif	114	Transcriptional repression and interaction with NCOR1 and SIN3A (By similarity).				negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription initiation from RNA polymerase II promoter|negative regulation of transcription regulatory region DNA binding|Notch signaling pathway|smooth muscle cell differentiation|transcription, DNA-dependent	transcriptional repressor complex	histone deacetylase binding|RNA polymerase II activating transcription factor binding|sequence-specific DNA binding			breast(1)	1				UCEC - Uterine corpus endometrioid carcinoma (4;0.0608)|GBM - Glioblastoma multiforme(226;0.0361)|all cancers(137;0.193)		CTACTTTGACGCACACGCTCT	0.527000													3	74	---	---	---	---	0	0	0.021553	0	0
ZNF92	168374	broad.mit.edu	37	7	64863789	64863789	+	Silent	SNP	G	A	A			TCGA-FY-A3NM-01A-11D-A21A-08	TCGA-FY-A3NM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	7a1ddc14-ba55-4811-98e4-4f15657410e6	7b5118e4-3bde-4fce-a1a3-81798b30420f	g.chr7:64863789G>A	uc003ttz.2	+	4	905	c.762G>A	c.(760-762)GAG>GAA	p.E254E	ZNF92_uc003tua.2_Silent_p.E185E|ZNF92_uc010kzu.2_Silent_p.E222E|ZNF92_uc003tub.2_Silent_p.E178E	NM_152626	NP_689839	Q03936	ZNF92_HUMAN	zinc finger protein 92 isoform 2	254						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Lung NSC(55;0.159)				ATACTGGAGAGAAACCCTACA	0.353000													5	94	---	---	---	---	0	0	0.003080	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110457580	110457580	+	Missense_Mutation	SNP	G	A	A			TCGA-FY-A3NM-01A-11D-A21A-08	TCGA-FY-A3NM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	7a1ddc14-ba55-4811-98e4-4f15657410e6	7b5118e4-3bde-4fce-a1a3-81798b30420f	g.chr8:110457580G>A	uc003yne.2	+	38	5586	c.5482G>A	c.(5482-5484)GTC>ATC	p.V1828I		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	1828	Extracellular (Potential).|IPT/TIG 10.				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			AAACCTGACTGTCAGCAGCCC	0.493000										HNSCC(38;0.096)			4	76	---	---	---	---	0	0	0.009096	0	0
CNTLN	54875	broad.mit.edu	37	9	17236415	17236415	+	Silent	SNP	G	A	A			TCGA-FY-A3NM-01A-11D-A21A-08	TCGA-FY-A3NM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	7a1ddc14-ba55-4811-98e4-4f15657410e6	7b5118e4-3bde-4fce-a1a3-81798b30420f	g.chr9:17236415G>A	uc003zmz.2	+	5	704	c.678G>A	c.(676-678)AAG>AAA	p.K226K	CNTLN_uc003zmx.3_Silent_p.K226K|CNTLN_uc003zmy.2_Silent_p.K226K|CNTLN_uc010mio.2_5'UTR	NM_017738	NP_060208	Q9NXG0	CNTLN_HUMAN	centlein isoform 1	226						centriole|membrane	two-component sensor activity			pancreas(1)	1				GBM - Glioblastoma multiforme(50;6.14e-10)		AGGACACTAAGGAGTGTGTAC	0.368000													11	45	---	---	---	---	0	0	0.028581	0	0
FAM47C	442444	broad.mit.edu	37	X	37028026	37028026	+	Missense_Mutation	SNP	T	C	C	rs141294322		TCGA-FY-A3NM-01A-11D-A21A-08	TCGA-FY-A3NM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	7a1ddc14-ba55-4811-98e4-4f15657410e6	7b5118e4-3bde-4fce-a1a3-81798b30420f	g.chrX:37028026T>C	uc004ddl.1	+	1	1557	c.1543T>C	c.(1543-1545)TCT>CCT	p.S515P		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	515										ovary(3)	3						CCCAGAGCCTTCTGAGACTGG	0.612000													5	118	---	---	---	---	0	0	0.001984	0	0
TMEM88B	643965	broad.mit.edu	37	1	1361531	1361533	+	In_Frame_Del	DEL	GGA	-	-			TCGA-FY-A3NM-01A-11D-A21A-08	TCGA-FY-A3NM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	7a1ddc14-ba55-4811-98e4-4f15657410e6	7b5118e4-3bde-4fce-a1a3-81798b30420f	g.chr1:1361531_1361533delGGA	uc010nyp.1	+	1	24_26	c.24_26delGGA	c.(22-27)ACGGAG>ACG	p.E12del		NM_001146685	NP_001140157	A6NKF7	TM88B_HUMAN	transmembrane protein 88B	12	Poly-Glu.					integral to membrane					0						GGAGGGAGACGGAGGAGGAGGAG	0.700													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	1	212688585	212688593	+	IGR	DEL	CCCGCCCCG	-	-	rs71881358		TCGA-FY-A3NM-01A-11D-A21A-08	TCGA-FY-A3NM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	7a1ddc14-ba55-4811-98e4-4f15657410e6	7b5118e4-3bde-4fce-a1a3-81798b30420f	g.chr1:212688585_212688593delCCCGCCCCG								NENF (68866 upstream) : ATF3 (50104 downstream)																							ACAAcccccccccgccccgccccgccccg	0.502													3	4	---	---	---	---					
LRP1	4035	broad.mit.edu	37	12	57605740	57605742	+	In_Frame_Del	DEL	TGC	-	-			TCGA-FY-A3NM-01A-11D-A21A-08	TCGA-FY-A3NM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	7a1ddc14-ba55-4811-98e4-4f15657410e6	7b5118e4-3bde-4fce-a1a3-81798b30420f	g.chr12:57605740_57605742delTGC	uc001snd.2	+	87	13755_13757	c.13289_13291delTGC	c.(13288-13293)TTGCTG>TTG	p.4430_4431LL>L		NM_002332	NP_002323	Q07954	LRP1_HUMAN	low density lipoprotein-related protein 1	4430_4431	Helical; (Potential).				aorta morphogenesis|apoptotic cell clearance|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of Wnt receptor signaling pathway|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			ovary(8)|lung(3)|breast(3)|large_intestine(2)|central_nervous_system(2)|skin(2)|pancreas(2)	22				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	CCTCTGCTGTTGCTGCTGCTGCT	0.557													10	406	---	---	---	---					
APEX1	328	broad.mit.edu	37	14	20923820	20923820	+	Frame_Shift_Del	DEL	A	-	-			TCGA-FY-A3NM-01A-11D-A21A-08	TCGA-FY-A3NM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	7a1ddc14-ba55-4811-98e4-4f15657410e6	7b5118e4-3bde-4fce-a1a3-81798b30420f	g.chr14:20923820delA	uc001vxg.2	+	2	348	c.16delA	c.(16-18)AAAfs	p.K6fs	OSGEP_uc001vxf.2_5'Flank|APEX1_uc001vxh.2_Frame_Shift_Del_p.K6fs|APEX1_uc001vxi.2_Frame_Shift_Del_p.K6fs|APEX1_uc001vxj.2_Frame_Shift_Del_p.K6fs	NM_001641	NP_001632	P27695	APEX1_HUMAN	APEX nuclease 1	6	Necessary for interaction with YBX1, binding to RNA, NPM1-dependent association with rRNA, endoribonuclease activity on abasic RNA and localization in the nucleoli.			K->R: Lack of acetylation, does not stimulate the YBX1-mediated MDR1 promoter activity and alter nuclear subcellular localization; when associated with R-7. Does not inhibit interaction with HDAC1, HDAC2 and HDAC3. Absence of increase in nCaRE binding activity.	base-excision repair|DNA demethylation|DNA recombination|positive regulation of anti-apoptosis|positive regulation of DNA repair|regulation of mRNA stability|regulation of transcription, DNA-dependent|transcription, DNA-dependent	centrosome|endoplasmic reticulum|mitochondrion|nuclear speck|nucleolus|perinuclear region of cytoplasm|ribosome	3'-5' exonuclease activity|chromatin DNA binding|damaged DNA binding|DNA-(apurinic or apyrimidinic site) lyase activity|metal ion binding|oxidoreductase activity|phosphodiesterase I activity|protein binding|ribonuclease H activity|RNA binding|site-specific endodeoxyribonuclease activity, specific for altered base|transcription coactivator activity|transcription corepressor activity|uracil DNA N-glycosylase activity			ovary(2)|breast(2)	4	all_cancers(95;0.00123)	all_lung(585;0.235)	Epithelial(56;1.09e-07)|all cancers(55;1.19e-06)	GBM - Glioblastoma multiforme(265;0.0224)|READ - Rectum adenocarcinoma(17;0.193)	Lucanthone(DB04967)	GAAGCGTGGGAAAAAGGGAGC	0.557								Direct_reversal_of_damage|Other_BER_factors					8	284	---	---	---	---					
SLC7A7	9056	broad.mit.edu	37	14	23291331	23291332	+	5'Flank	INS	-	C	C			TCGA-FY-A3NM-01A-11D-A21A-08	TCGA-FY-A3NM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	7a1ddc14-ba55-4811-98e4-4f15657410e6	7b5118e4-3bde-4fce-a1a3-81798b30420f	g.chr14:23291331_23291332insC	uc001wgu.3	-						SLC7A7_uc001wgv.3_5'Flank	NM_001126106	NP_001119578	Q9UM01	YLAT1_HUMAN	solute carrier family 7 member 7						blood coagulation|cellular amino acid metabolic process|ion transport|leukocyte migration|protein complex assembly	basolateral plasma membrane|integral to plasma membrane	amino acid transmembrane transporter activity			ovary(1)|breast(1)	2	all_cancers(95;8.44e-05)			GBM - Glioblastoma multiforme(265;0.00741)		CCCCCTCTCCGCCCCCGCCCAA	0.673													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	15	32680129	32680130	+	IGR	INS	-	A	A			TCGA-FY-A3NM-01A-11D-A21A-08	TCGA-FY-A3NM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	7a1ddc14-ba55-4811-98e4-4f15657410e6	7b5118e4-3bde-4fce-a1a3-81798b30420f	g.chr15:32680129_32680130insA								CHRNA7 (218896 upstream) : ARHGAP11A (227215 downstream)																							CCCGCCCCCCCACCAAGCATGG	0.619													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	89137083	89137084	+	IGR	INS	-	C	C			TCGA-FY-A3NM-01A-11D-A21A-08	TCGA-FY-A3NM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	7a1ddc14-ba55-4811-98e4-4f15657410e6	7b5118e4-3bde-4fce-a1a3-81798b30420f	g.chr16:89137083_89137084insC								CBFA2T3 (93682 upstream) : ACSF3 (23170 downstream)																							CATGGCCCTTACCCCCACCCCC	0.421													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	18	11110713	11110713	+	IGR	DEL	G	-	-			TCGA-FY-A3NM-01A-11D-A21A-08	TCGA-FY-A3NM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	7a1ddc14-ba55-4811-98e4-4f15657410e6	7b5118e4-3bde-4fce-a1a3-81798b30420f	g.chr18:11110713delG								FAM38B (408734 upstream) : GNAL (578423 downstream)																							cggcccgcccgccccgGGTCT	0.498													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	1282508	1282508	+	IGR	DEL	A	-	-			TCGA-FY-A3NM-01A-11D-A21A-08	TCGA-FY-A3NM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	7a1ddc14-ba55-4811-98e4-4f15657410e6	7b5118e4-3bde-4fce-a1a3-81798b30420f	g.chr19:1282508delA								C19orf24 (3266 upstream) : EFNA2 (3660 downstream)																							gtgtgaagggaaggagggagg	0.000													3	5	---	---	---	---					
NUMBL	9253	broad.mit.edu	37	19	41179384	41179384	+	Frame_Shift_Del	DEL	C	-	-			TCGA-FY-A3NM-01A-11D-A21A-08	TCGA-FY-A3NM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	7a1ddc14-ba55-4811-98e4-4f15657410e6	7b5118e4-3bde-4fce-a1a3-81798b30420f	g.chr19:41179384delC	uc002oon.2	-	8	1069	c.901delG	c.(901-903)GTTfs	p.V301fs	NUMBL_uc010xvq.1_Frame_Shift_Del_p.V260fs|NUMBL_uc002ooo.2_Frame_Shift_Del_p.V300fs|NUMBL_uc010xvr.1_Frame_Shift_Del_p.V260fs	NM_004756	NP_004747	Q9Y6R0	NUMBL_HUMAN	numb homolog (Drosophila)-like	301					cytokine-mediated signaling pathway|lateral ventricle development|neuroblast division in subventricular zone|protein metabolic process	cytoplasm	protein binding			lung(3)|ovary(1)|breast(1)	5			Lung(22;0.000393)|LUSC - Lung squamous cell carcinoma(20;0.00105)			CCCTGGCGAACCAGCTGCTCC	0.657													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	53294737	53294737	+	IGR	DEL	A	-	-			TCGA-FY-A3NM-01A-11D-A21A-08	TCGA-FY-A3NM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	7a1ddc14-ba55-4811-98e4-4f15657410e6	7b5118e4-3bde-4fce-a1a3-81798b30420f	g.chr19:53294737delA								ZNF600 (4703 upstream) : ZNF28 (5925 downstream)																							TCCAAAGAGGAATATCACTTC	0.433													74	84	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	29300438	29300439	+	IGR	DEL	AC	-	-			TCGA-FY-A3NM-01A-11D-A21A-08	TCGA-FY-A3NM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	7a1ddc14-ba55-4811-98e4-4f15657410e6	7b5118e4-3bde-4fce-a1a3-81798b30420f	g.chr2:29300438_29300439delAC								C2orf71 (3311 upstream) : CLIP4 (20132 downstream)																							acacacacagacacacacacaT	0.238													4	4	---	---	---	---					
EVX2	344191	broad.mit.edu	37	2	176944986	176944988	+	In_Frame_Del	DEL	CCG	-	-			TCGA-FY-A3NM-01A-11D-A21A-08	TCGA-FY-A3NM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	7a1ddc14-ba55-4811-98e4-4f15657410e6	7b5118e4-3bde-4fce-a1a3-81798b30420f	g.chr2:176944986_176944988delCCG	uc010zeu.1	-	3	1464_1466	c.1278_1280delCGG	c.(1276-1281)GGCGGG>GGG	p.426_427GG>G		NM_001080458	NP_001073927	Q03828	EVX2_HUMAN	even-skipped homeobox 2	426_427	Poly-Gly.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0207)|Epithelial(96;0.18)	READ - Rectum adenocarcinoma(9;0.0678)|Colorectal(32;0.115)		Cccggcgcccccgccgccgccgc	0.374													2	4	---	---	---	---					
TMEM90B	79953	broad.mit.edu	37	20	24524183	24524185	+	In_Frame_Del	DEL	GGA	-	-			TCGA-FY-A3NM-01A-11D-A21A-08	TCGA-FY-A3NM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	7a1ddc14-ba55-4811-98e4-4f15657410e6	7b5118e4-3bde-4fce-a1a3-81798b30420f	g.chr20:24524183_24524185delGGA	uc002wtw.1	+	2	1083_1085	c.450_452delGGA	c.(448-453)GTGGAG>GTG	p.E155del		NM_024893	NP_079169	Q9H7V2	SYNG1_HUMAN	transmembrane protein 90B	155	Poly-Glu.|Cytoplasmic (Potential).				response to biotic stimulus	early endosome membrane|integral to membrane|plasma membrane					0						CCTACGATGTGGAGGAGGAGGAG	0.547													7	292	---	---	---	---					
VSTM2L	128434	broad.mit.edu	37	20	36531465	36531466	+	5'Flank	DEL	GC	-	-			TCGA-FY-A3NM-01A-11D-A21A-08	TCGA-FY-A3NM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	7a1ddc14-ba55-4811-98e4-4f15657410e6	7b5118e4-3bde-4fce-a1a3-81798b30420f	g.chr20:36531465_36531466delGC	uc002xhk.3	+							NM_080607	NP_542174	Q96N03	VTM2L_HUMAN	V-set and transmembrane domain containing 2 like											ovary(1)|central_nervous_system(1)	2		Myeloproliferative disorder(115;0.00878)				gaggagggaggcgggaggaggg	0.515													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	20	56014376	56014376	+	IGR	DEL	T	-	-	rs111385647		TCGA-FY-A3NM-01A-11D-A21A-08	TCGA-FY-A3NM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	7a1ddc14-ba55-4811-98e4-4f15657410e6	7b5118e4-3bde-4fce-a1a3-81798b30420f	g.chr20:56014376delT								RBM38 (29992 upstream) : CTCFL (49504 downstream)																							gcactgcccctcccacccccc	0.070													3	3	---	---	---	---					
FAM3B	54097	broad.mit.edu	37	21	42675816	42675816	+	5'Flank	DEL	G	-	-			TCGA-FY-A3NM-01A-11D-A21A-08	TCGA-FY-A3NM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	7a1ddc14-ba55-4811-98e4-4f15657410e6	7b5118e4-3bde-4fce-a1a3-81798b30420f	g.chr21:42675816delG	uc011aeq.1	+						FAM3B_uc002yza.2_5'Flank	NM_058186	NP_478066	P58499	FAM3B_HUMAN	family with sequence similarity 3, member B						apoptosis|insulin secretion	extracellular space	cytokine activity				0		Prostate(19;1.57e-07)|all_epithelial(19;0.0404)				gtgtgtgGCAGGGGGGGGGTT	0.547													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	22	49153040	49153042	+	IGR	DEL	AGA	-	-			TCGA-FY-A3NM-01A-11D-A21A-08	TCGA-FY-A3NM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	7a1ddc14-ba55-4811-98e4-4f15657410e6	7b5118e4-3bde-4fce-a1a3-81798b30420f	g.chr22:49153040_49153042delAGA								FAM19A5 (5298 upstream) : C22orf34 (655134 downstream)																							AAggaggaggagaagggaggagg	0.069													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	3	75853940	75853941	+	IGR	DEL	AT	-	-	rs147501217		TCGA-FY-A3NM-01A-11D-A21A-08	TCGA-FY-A3NM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	7a1ddc14-ba55-4811-98e4-4f15657410e6	7b5118e4-3bde-4fce-a1a3-81798b30420f	g.chr3:75853940_75853941delAT								ZNF717 (19270 upstream) : None (None downstream)																							tctcaaaaaaatgtgtgtgtgt	0.000													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	68485521	68485522	+	IGR	INS	-	GGT	GGT	rs147232648	by1000genomes	TCGA-FY-A3NM-01A-11D-A21A-08	TCGA-FY-A3NM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	7a1ddc14-ba55-4811-98e4-4f15657410e6	7b5118e4-3bde-4fce-a1a3-81798b30420f	g.chr7:68485521_68485522insGGT								None (None upstream) : AUTS2 (578383 downstream)																							gtggtggtggaggtggtggtgg	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	8	23342959	23342960	+	IGR	DEL	GT	-	-	rs13257250	by1000genomes	TCGA-FY-A3NM-01A-11D-A21A-08	TCGA-FY-A3NM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	7a1ddc14-ba55-4811-98e4-4f15657410e6	7b5118e4-3bde-4fce-a1a3-81798b30420f	g.chr8:23342959_23342960delGT								ENTPD4 (27715 upstream) : SLC25A37 (43403 downstream)																							TTTCAGTAGCgtgtgtgtgtgt	0.342													2	4	---	---	---	---					
UBE2W	55284	broad.mit.edu	37	8	74717937	74717937	+	Frame_Shift_Del	DEL	A	-	-			TCGA-FY-A3NM-01A-11D-A21A-08	TCGA-FY-A3NM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	7a1ddc14-ba55-4811-98e4-4f15657410e6	7b5118e4-3bde-4fce-a1a3-81798b30420f	g.chr8:74717937delA	uc003xzv.2	-	5	444	c.391delT	c.(391-393)TATfs	p.Y131fs	UBE2W_uc003xzt.2_Frame_Shift_Del_p.Y131fs|UBE2W_uc003xzu.2_Frame_Shift_Del_p.Y142fs|UBE2W_uc003xzw.2_RNA	NM_018299	NP_060769	Q96B02	UBE2W_HUMAN	ubiquitin-conjugating enzyme E2W (putative)	131					protein K11-linked ubiquitination|protein monoubiquitination		ATP binding|protein binding|ubiquitin-protein ligase activity				0	Breast(64;0.0311)		Epithelial(68;0.0235)|all cancers(69;0.0687)|BRCA - Breast invasive adenocarcinoma(89;0.069)			GTTCGCACATAAAAAGAATTA	0.299													2	4	---	---	---	---					
HSF1	3297	broad.mit.edu	37	8	145515453	145515454	+	Frame_Shift_Ins	INS	-	GG	GG			TCGA-FY-A3NM-01A-11D-A21A-08	TCGA-FY-A3NM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	7a1ddc14-ba55-4811-98e4-4f15657410e6	7b5118e4-3bde-4fce-a1a3-81798b30420f	g.chr8:145515453_145515454insGG	uc003zbt.3	+	1	184_185	c.14_15insGG	c.(13-15)GTGfs	p.V5fs	BOP1_uc003zbr.1_5'Flank|HSF1_uc003zbu.3_RNA	NM_005526	NP_005517	Q00613	HSF1_HUMAN	heat shock transcription factor 1	5						cytoplasm	protein binding|sequence-specific DNA binding transcription factor activity				0	all_cancers(97;6.64e-12)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;3.94e-40)|Epithelial(56;1.12e-39)|all cancers(56;9.11e-35)|BRCA - Breast invasive adenocarcinoma(115;0.0547)|Colorectal(110;0.055)			GATCTGCCCGTgggccccggcg	0.599													2	4	---	---	---	---					
PLCXD1	55344	broad.mit.edu	37	X	197043	197044	+	5'Flank	INS	-	C	C			TCGA-FY-A3NM-01A-11D-A21A-08	TCGA-FY-A3NM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	7a1ddc14-ba55-4811-98e4-4f15657410e6	7b5118e4-3bde-4fce-a1a3-81798b30420f	g.chrX:197043_197044insC	uc004cpc.2	+						PLCXD1_uc011mgx.1_Intron	NM_018390	NP_060860	Q9NUJ7	PLCX1_HUMAN	phosphatidylinositol-specific phospholipase C, X						intracellular signal transduction|lipid metabolic process		phospholipase C activity				0		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				gcagggggaagggaggccgtgc	0.050													3	6	---	---	---	---					
PPP1R3F	89801	broad.mit.edu	37	X	49126549	49126551	+	In_Frame_Del	DEL	GGC	-	-			TCGA-FY-A3NM-01A-11D-A21A-08	TCGA-FY-A3NM-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	7a1ddc14-ba55-4811-98e4-4f15657410e6	7b5118e4-3bde-4fce-a1a3-81798b30420f	g.chrX:49126549_49126551delGGC	uc004dnh.1	+	1	233_235	c.217_219delGGC	c.(217-219)GGCdel	p.G78del	PPP1R3F_uc011mnd.1_Intron|PPP1R3F_uc004dni.2_Intron	NM_033215	NP_149992	Q6ZSY5	PPR3F_HUMAN	protein phosphatase 1, regulatory (inhibitor)	78	Extracellular (Potential).					integral to membrane				ovary(2)|skin(1)	3	Ovarian(276;0.236)					cgggcaagatggcggcggcggcg	0.310													2	4	---	---	---	---					
