Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
C1orf151	440574	broad.mit.edu	37	1	19948613	19948613	+	Silent	SNP	A	T	T			TCGA-FY-A3NN-01A-11D-A21A-08	TCGA-FY-A3NN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	94685f1a-d017-41d1-8b00-1c24ac80ee18	2275d069-2d8f-4ea6-b1af-7ea5f185b985	g.chr1:19948613A>T	uc001bci.1	+	2	157	c.84A>T	c.(82-84)GGA>GGT	p.G28G	C1orf151_uc001bch.1_RNA|NBL1_uc009vpl.1_Intron	NM_001032363	NP_001027535	Q5TGZ0	CA151_HUMAN	chromosome 1 open reading frame 151 protein	28	Helical; (Potential).					integral to membrane|mitochondrion				central_nervous_system(1)	1		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000323)|Lung NSC(340;0.000401)|Breast(348;0.00043)|Ovarian(437;0.00374)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00492)|BRCA - Breast invasive adenocarcinoma(304;3.58e-05)|Kidney(64;0.000191)|GBM - Glioblastoma multiforme(114;0.000696)|KIRC - Kidney renal clear cell carcinoma(64;0.00274)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0656)		TTGGATTAGGAATTGTTTTCT	0.343000													8	36	---	---	---	---	0	0	0.006214	0	0
FGF3	2248	broad.mit.edu	37	11	69625427	69625427	+	Silent	SNP	G	A	A			TCGA-FY-A3NN-01A-11D-A21A-08	TCGA-FY-A3NN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	94685f1a-d017-41d1-8b00-1c24ac80ee18	2275d069-2d8f-4ea6-b1af-7ea5f185b985	g.chr11:69625427G>A	uc001oph.2	-	3	857	c.366C>T	c.(364-366)CAC>CAT	p.H122H		NM_005247	NP_005238	P11487	FGF3_HUMAN	fibroblast growth factor 3 precursor	122					fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|negative regulation of cardiac muscle tissue development|positive regulation of cell division|positive regulation of cell proliferation	extracellular region	growth factor activity			ovary(1)|lung(1)	2			LUSC - Lung squamous cell carcinoma(11;5.05e-15)|STAD - Stomach adenocarcinoma(18;0.0278)			AGCCCAGCTCGTGGATCCGCT	0.647000													7	174	---	---	---	---	0	0	0.004482	0	0
KRT85	3891	broad.mit.edu	37	12	52756206	52756206	+	Missense_Mutation	SNP	G	A	A	rs143320259		TCGA-FY-A3NN-01A-11D-A21A-08	TCGA-FY-A3NN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	94685f1a-d017-41d1-8b00-1c24ac80ee18	2275d069-2d8f-4ea6-b1af-7ea5f185b985	g.chr12:52756206G>A	uc001sag.2	-	7	1247	c.1127C>T	c.(1126-1128)GCG>GTG	p.A376V		NM_002283	NP_002274	P78386	KRT85_HUMAN	keratin 85	376	Rod.|Coil 2.				epidermis development	keratin filament	protein binding|structural molecule activity			ovary(1)	1	Myeloproliferative disorder(4;0.0484)|all_hematologic(5;0.088)			BRCA - Breast invasive adenocarcinoma(357;0.189)		GCTGAGGGCCGCCTCACCCTG	0.632000													4	68	---	---	---	---	0	0	0.001984	0	0
F10	2159	broad.mit.edu	37	13	113803259	113803259	+	Missense_Mutation	SNP	G	A	A			TCGA-FY-A3NN-01A-11D-A21A-08	TCGA-FY-A3NN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	94685f1a-d017-41d1-8b00-1c24ac80ee18	2275d069-2d8f-4ea6-b1af-7ea5f185b985	g.chr13:113803259G>A	uc001vsx.2	+	8	952	c.895G>A	c.(895-897)GGT>AGT	p.G299S	F10_uc001vsy.2_Silent_p.A295A|F10_uc001vsz.2_Silent_p.A297A	NM_000504	NP_000495	P00742	FA10_HUMAN	coagulation factor X preproprotein	299	Peptidase S1.				blood coagulation, extrinsic pathway|blood coagulation, intrinsic pathway|peptidyl-glutamic acid carboxylation|positive regulation of cell migration|positive regulation of protein kinase B signaling cascade|post-translational protein modification|proteolysis	endoplasmic reticulum lumen|extracellular region|Golgi lumen	calcium ion binding|phospholipid binding|protein binding|serine-type endopeptidase activity			pancreas(1)	1	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)	all_cancers(25;0.113)|all_lung(25;0.0364)|all_epithelial(44;0.0373)|Lung NSC(25;0.128)|Breast(118;0.188)	all cancers(43;0.0805)|Epithelial(84;0.231)		Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Coagulation factor VIIa(DB00036)|Enoxaparin(DB01225)|Heparin(DB01109)|Menadione(DB00170)|Reteplase(DB00015)|Tenecteplase(DB00031)	GGAGGAGGGCGGTGAGGCGGT	0.602000													5	322	---	---	---	---	0	0	0.001984	0	0
STON2	85439	broad.mit.edu	37	14	81743303	81743303	+	Silent	SNP	G	A	A			TCGA-FY-A3NN-01A-11D-A21A-08	TCGA-FY-A3NN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	94685f1a-d017-41d1-8b00-1c24ac80ee18	2275d069-2d8f-4ea6-b1af-7ea5f185b985	g.chr14:81743303G>A	uc010tvu.1	-	4	2553	c.2352C>T	c.(2350-2352)TAC>TAT	p.Y784Y	STON2_uc001xvk.1_Silent_p.Y784Y|STON2_uc010tvt.1_Silent_p.Y581Y	NM_033104	NP_149095	Q8WXE9	STON2_HUMAN	stonin 2	784	MHD.				endocytosis|intracellular protein transport|regulation of endocytosis	clathrin adaptor complex|nucleolus	protein binding			skin(3)|pancreas(2)	5				BRCA - Breast invasive adenocarcinoma(234;0.0348)		AGGCATGCTCGTACTTGGCAG	0.493000													5	166	---	---	---	---	0	0	0.001984	0	0
ABCA3	21	broad.mit.edu	37	16	2328297	2328297	+	Silent	SNP	G	A	A			TCGA-FY-A3NN-01A-11D-A21A-08	TCGA-FY-A3NN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	94685f1a-d017-41d1-8b00-1c24ac80ee18	2275d069-2d8f-4ea6-b1af-7ea5f185b985	g.chr16:2328297G>A	uc002cpy.1	-	30	5422	c.4710C>T	c.(4708-4710)ACC>ACT	p.T1570T	ABCA3_uc010bsk.1_Silent_p.T1512T	NM_001089	NP_001080	Q99758	ABCA3_HUMAN	ATP-binding cassette, sub-family A member 3	1570	ABC transporter 2.				response to drug	integral to membrane|lamellar body|membrane fraction|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			breast(5)|ovary(5)|central_nervous_system(3)|upper_aerodigestive_tract(1)|lung(1)|skin(1)	16		Ovarian(90;0.17)				ACCTGTGGGAGGTGATGATGA	0.647000													3	92	---	---	---	---	0	0	0.009096	0	0
ITGAM	3684	broad.mit.edu	37	16	31336828	31336828	+	Missense_Mutation	SNP	G	A	A			TCGA-FY-A3NN-01A-11D-A21A-08	TCGA-FY-A3NN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	94685f1a-d017-41d1-8b00-1c24ac80ee18	2275d069-2d8f-4ea6-b1af-7ea5f185b985	g.chr16:31336828G>A	uc002ebq.2	+	21	2611	c.2513G>A	c.(2512-2514)CGC>CAC	p.R838H	ITGAM_uc002ebr.2_Missense_Mutation_p.R839H|ITGAM_uc010can.2_Missense_Mutation_p.R244H|ITGAM_uc002ebs.1_Missense_Mutation_p.R244H	NM_000632	NP_000623	P11215	ITAM_HUMAN	integrin alpha M isoform 2 precursor	838	Extracellular (Potential).				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration	integrin complex	glycoprotein binding|receptor activity			kidney(1)	1						CAGAACCAGCGCTCACAGCGA	0.602000													36	48	---	---	---	---	0	0	0.009718	0	0
KRT33A	3883	broad.mit.edu	37	17	39504836	39504836	+	Missense_Mutation	SNP	G	A	A			TCGA-FY-A3NN-01A-11D-A21A-08	TCGA-FY-A3NN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	94685f1a-d017-41d1-8b00-1c24ac80ee18	2275d069-2d8f-4ea6-b1af-7ea5f185b985	g.chr17:39504836G>A	uc002hwk.1	-	3	524	c.487C>T	c.(487-489)CGC>TGC	p.R163C		NM_004138	NP_004129	O76009	KT33A_HUMAN	keratin 33A	163	Rod.|Coil 1B.					intermediate filament	protein binding|structural molecule activity				0		Breast(137;0.000496)				AGGATCCTGCGCAGGCCATTG	0.607000													4	170	---	---	---	---	0	0	0.009096	0	0
PPM1D	8493	broad.mit.edu	37	17	58740503	58740503	+	Missense_Mutation	SNP	G	A	A			TCGA-FY-A3NN-01A-11D-A21A-08	TCGA-FY-A3NN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	94685f1a-d017-41d1-8b00-1c24ac80ee18	2275d069-2d8f-4ea6-b1af-7ea5f185b985	g.chr17:58740503G>A	uc002iyt.1	+	6	1630	c.1408G>A	c.(1408-1410)GAT>AAT	p.D470N	PPM1D_uc010ddm.1_RNA	NM_003620	NP_003611	O15297	PPM1D_HUMAN	protein phosphatase 1D	470					negative regulation of cell proliferation|protein dephosphorylation|response to radiation	nucleus|protein serine/threonine phosphatase complex	metal ion binding|protein binding|protein serine/threonine phosphatase activity			upper_aerodigestive_tract(1)	1	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)		Epithelial(12;6.75e-12)|all cancers(12;1.96e-10)			ACCCTCAAAAGATCCAGAACC	0.423000											OREG0031485	type=REGULATORY REGION|TFbs=ESR1|Dataset=Estrogen Receptor Alpha Binding Sites|EvidenceSubtype=Chromatin immunoprecipitation with tag sequencing (ChIP-TS)	3	59	---	---	---	---	0	0	0.004672	0	0
NAPSB	256236	broad.mit.edu	37	19	50838162	50838162	+	Missense_Mutation	SNP	G	A	A			TCGA-FY-A3NN-01A-11D-A21A-08	TCGA-FY-A3NN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	94685f1a-d017-41d1-8b00-1c24ac80ee18	2275d069-2d8f-4ea6-b1af-7ea5f185b985	g.chr19:50838162G>A	uc002prw.2	-	7	853	c.77C>T	c.(76-78)CCT>CTT	p.P26L	NR1H2_uc002prv.3_Intron	NR_002798				Homo sapiens napsin B pseudogene, mRNA sequence.											central_nervous_system(1)	1						TACGATGACAGGTGTGCCTGT	0.617000													3	42	---	---	---	---	0	0	0.000602	0	0
TTC21B	79809	broad.mit.edu	37	2	166770121	166770121	+	Missense_Mutation	SNP	A	G	G			TCGA-FY-A3NN-01A-11D-A21A-08	TCGA-FY-A3NN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	94685f1a-d017-41d1-8b00-1c24ac80ee18	2275d069-2d8f-4ea6-b1af-7ea5f185b985	g.chr2:166770121A>G	uc002udk.2	-	16	2307	c.2174T>C	c.(2173-2175)TTT>TCT	p.F725S		NM_024753	NP_079029	Q7Z4L5	TT21B_HUMAN	tetratricopeptide repeat domain 21B	725	TPR 9.					cilium axoneme|cytoplasm|cytoskeleton	binding			ovary(2)|pancreas(2)|breast(1)	5						AAGGAGAAGAAAAGACCGAGG	0.323000													18	51	---	---	---	---	0	0	0.002780	0	0
TWF2	11344	broad.mit.edu	37	3	52266070	52266070	+	Silent	SNP	G	A	A			TCGA-FY-A3NN-01A-11D-A21A-08	TCGA-FY-A3NN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	94685f1a-d017-41d1-8b00-1c24ac80ee18	2275d069-2d8f-4ea6-b1af-7ea5f185b985	g.chr3:52266070G>A	uc003ddd.2	-	3	323	c.172C>T	c.(172-174)CTG>TTG	p.L58L	TLR9_uc003ddb.2_5'Flank|TLR9_uc003ddc.1_5'Flank|TWF2_uc010hmc.2_Silent_p.L58L	NM_007284	NP_009215	Q6IBS0	TWF2_HUMAN	twinfilin-like protein	58	ADF-H 1.					cytoskeleton|perinuclear region of cytoplasm	actin binding|ATP binding			stomach(1)|ovary(1)|lung(1)	3				BRCA - Breast invasive adenocarcinoma(193;2.43e-05)|Kidney(197;0.000539)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)		AGCAGTGGCAGCACGGCCCTG	0.662000											OREG0015610	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	3	41	---	---	---	---	0	0	0.004672	0	0
MTHFD2L	441024	broad.mit.edu	37	4	75147202	75147202	+	Missense_Mutation	SNP	G	A	A			TCGA-FY-A3NN-01A-11D-A21A-08	TCGA-FY-A3NN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	94685f1a-d017-41d1-8b00-1c24ac80ee18	2275d069-2d8f-4ea6-b1af-7ea5f185b985	g.chr4:75147202G>A	uc011cbk.1	+	7	893	c.866G>A	c.(865-867)GGT>GAT	p.G289D	MTHFD2L_uc003hhu.2_RNA|uc003hhv.1_Intron	NM_001144978	NP_001138450	Q9H903	MTD2L_HUMAN	methylenetetrahydrofolate dehydrogenase 2-like	231					folic acid-containing compound biosynthetic process|histidine biosynthetic process|methionine biosynthetic process|one-carbon metabolic process|purine nucleotide biosynthetic process		binding|methenyltetrahydrofolate cyclohydrolase activity|methylenetetrahydrofolate dehydrogenase (NAD+) activity			ovary(1)|central_nervous_system(1)	2			all cancers(17;0.0101)|Lung(101;0.196)			ATTGATGTGGGTATCAACTAT	0.368000													3	50	---	---	---	---	0	0	0.004672	0	0
CDH12	1010	broad.mit.edu	37	5	21817055	21817055	+	Missense_Mutation	SNP	T	C	C			TCGA-FY-A3NN-01A-11D-A21A-08	TCGA-FY-A3NN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	94685f1a-d017-41d1-8b00-1c24ac80ee18	2275d069-2d8f-4ea6-b1af-7ea5f185b985	g.chr5:21817055T>C	uc010iuc.2	-	6	1459	c.1001A>G	c.(1000-1002)AAG>AGG	p.K334R	CDH12_uc011cno.1_Missense_Mutation_p.K294R|CDH12_uc003jgk.2_Missense_Mutation_p.K334R	NM_004061	NP_004052	P55289	CAD12_HUMAN	cadherin 12, type 2 preproprotein	334	Extracellular (Potential).|Cadherin 3.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2						TCTATATACCTTTTTCAATTT	0.284000										HNSCC(59;0.17)			3	109	---	---	---	---	0	0	0.004672	0	0
PRDM9	56979	broad.mit.edu	37	5	23527083	23527083	+	Missense_Mutation	SNP	G	C	C	rs112192848		TCGA-FY-A3NN-01A-11D-A21A-08	TCGA-FY-A3NN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	94685f1a-d017-41d1-8b00-1c24ac80ee18	2275d069-2d8f-4ea6-b1af-7ea5f185b985	g.chr5:23527083G>C	uc003jgo.2	+	11	2068	c.1886G>C	c.(1885-1887)AGA>ACA	p.R629T		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	629	C2H2-type 5.				meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						CACCAGAGGAGACACACAGGG	0.612000										HNSCC(3;0.000094)			4	113	---	---	---	---	0	0	0.000602	0	0
NOTCH4	4855	broad.mit.edu	37	6	32190351	32190351	+	Missense_Mutation	SNP	T	C	C			TCGA-FY-A3NN-01A-11D-A21A-08	TCGA-FY-A3NN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	94685f1a-d017-41d1-8b00-1c24ac80ee18	2275d069-2d8f-4ea6-b1af-7ea5f185b985	g.chr6:32190351T>C	uc003obb.2	-	3	527	c.388A>G	c.(388-390)AGG>GGG	p.R130G	NOTCH4_uc011dpu.1_RNA|NOTCH4_uc011dpv.1_RNA|NOTCH4_uc003obc.2_Missense_Mutation_p.R130G	NM_004557	NP_004548	Q99466	NOTC4_HUMAN	notch4 preproprotein	130	EGF-like 3.|Extracellular (Potential).				cell fate determination|embryo development|hemopoiesis|mammary gland development|negative regulation of endothelial cell differentiation|Notch receptor processing|Notch signaling pathway|patterning of blood vessels|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|protein heterodimerization activity|receptor activity			lung(8)|ovary(5)|breast(4)|central_nervous_system(3)|upper_aerodigestive_tract(1)|skin(1)	22						CAGCGGCCCCTTTTGGAACAG	0.622000													3	80	---	---	---	---	0	0	0.009096	0	0
COBL	23242	broad.mit.edu	37	7	51111289	51111289	+	Silent	SNP	C	T	T			TCGA-FY-A3NN-01A-11D-A21A-08	TCGA-FY-A3NN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	94685f1a-d017-41d1-8b00-1c24ac80ee18	2275d069-2d8f-4ea6-b1af-7ea5f185b985	g.chr7:51111289C>T	uc003tpr.3	-	8	1382	c.1197G>A	c.(1195-1197)GCG>GCA	p.A399A	COBL_uc003tps.2_Silent_p.A456A|COBL_uc011kcl.1_Silent_p.A399A|COBL_uc010kzc.2_Silent_p.A399A|COBL_uc003tpp.3_Silent_p.A185A|COBL_uc003tpq.3_Silent_p.A340A	NM_015198	NP_056013	O75128	COBL_HUMAN	cordon-bleu homolog	399										skin(3)|ovary(2)	5	Glioma(55;0.08)					TGTCCTCCGACGCAAAACAGC	0.607000													5	93	---	---	---	---	0	0	0.001168	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-FY-A3NN-01A-11D-A21A-08	TCGA-FY-A3NN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	94685f1a-d017-41d1-8b00-1c24ac80ee18	2275d069-2d8f-4ea6-b1af-7ea5f185b985	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				28	60	---	---	---	---	0	0	0.012213	0	0
COL22A1	169044	broad.mit.edu	37	8	139658912	139658912	+	Missense_Mutation	SNP	G	A	A			TCGA-FY-A3NN-01A-11D-A21A-08	TCGA-FY-A3NN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	94685f1a-d017-41d1-8b00-1c24ac80ee18	2275d069-2d8f-4ea6-b1af-7ea5f185b985	g.chr8:139658912G>A	uc003yvd.2	-	47	3908	c.3461C>T	c.(3460-3462)CCT>CTT	p.P1154L	COL22A1_uc011ljo.1_Missense_Mutation_p.P434L	NM_152888	NP_690848	Q8NFW1	COMA1_HUMAN	collagen, type XXII, alpha 1	1154	Pro-rich.|Gly-rich.|Collagen-like 10.				cell adhesion	collagen|cytoplasm	structural molecule activity	p.P1154S(1)		ovary(11)|pancreas(1)|skin(1)	13	all_epithelial(106;1.55e-12)|Lung NSC(106;1.67e-05)|all_lung(105;3.39e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0517)			TAGGCCTGGAGGCCCAGCCTC	0.493000										HNSCC(7;0.00092)			3	5	---	---	---	---	0	0	0.004672	0	0
ZNF623	9831	broad.mit.edu	37	8	144733418	144733418	+	Missense_Mutation	SNP	A	G	G			TCGA-FY-A3NN-01A-11D-A21A-08	TCGA-FY-A3NN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	94685f1a-d017-41d1-8b00-1c24ac80ee18	2275d069-2d8f-4ea6-b1af-7ea5f185b985	g.chr8:144733418A>G	uc003yzd.2	+	1	1465	c.1376A>G	c.(1375-1377)TAT>TGT	p.Y459C	ZNF623_uc011lkp.1_Missense_Mutation_p.Y419C|ZNF623_uc003yzc.2_Missense_Mutation_p.Y419C	NM_014789	NP_055604	O75123	ZN623_HUMAN	zinc finger protein 623 isoform 1	459	C2H2-type 13.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(97;3.74e-11)|all_epithelial(106;2.62e-09)|Lung NSC(106;0.00013)|all_lung(105;0.000374)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;5.28e-40)|all cancers(56;5.23e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.146)			GAAAAGCCCTATGTGTGCAGT	0.443000													34	50	---	---	---	---	0	0	0.007835	0	0
SLC27A4	10999	broad.mit.edu	37	9	131112801	131112801	+	Missense_Mutation	SNP	G	A	A			TCGA-FY-A3NN-01A-11D-A21A-08	TCGA-FY-A3NN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	94685f1a-d017-41d1-8b00-1c24ac80ee18	2275d069-2d8f-4ea6-b1af-7ea5f185b985	g.chr9:131112801G>A	uc004but.2	+	6	1108	c.824G>A	c.(823-825)CGC>CAC	p.R275H	SLC27A4_uc004buu.2_Intron	NM_005094	NP_005085	Q6P1M0	S27A4_HUMAN	solute carrier family 27 (fatty acid	275					long-chain fatty acid transport|transmembrane transport	integral to membrane	fatty acid transporter activity|nucleotide binding|protein binding				0						TATGGATTCCGCATGCGGCCC	0.607000													3	36	---	---	---	---	0	0	0.000602	0	0
AIM1L	55057	broad.mit.edu	37	1	26671506	26671556	+	5'Flank	DEL	ACCTCTTTCCAGGTGGGAAATGAGGCATCAGGAGCACCGGGGCCCTTCACG	-	-	rs67044151	by1000genomes	TCGA-FY-A3NN-01A-11D-A21A-08	TCGA-FY-A3NN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	94685f1a-d017-41d1-8b00-1c24ac80ee18	2275d069-2d8f-4ea6-b1af-7ea5f185b985	g.chr1:26671506_26671556delACCTCTTTCCAGGTGGGAAATGAGGCATCAGGAGCACCGGGGCCCTTCACG	uc001bmd.3	-							NM_001039775	NP_001034864	Q8N1P7	AIM1L_HUMAN	absent in melanoma 1-like								sugar binding			pancreas(1)	1		all_cancers(24;4.67e-25)|Colorectal(325;3.46e-05)|all_lung(284;5.94e-05)|Lung NSC(340;7.26e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.00637)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;1.51e-27)|Colorectal(126;1.61e-08)|COAD - Colon adenocarcinoma(152;9.32e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.000792)|BRCA - Breast invasive adenocarcinoma(304;0.00104)|STAD - Stomach adenocarcinoma(196;0.00154)|GBM - Glioblastoma multiforme(114;0.00858)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.165)|LUSC - Lung squamous cell carcinoma(448;0.239)		GCCCTTCACAACCTCTTTCCAGGTGGGAAATGAGGCATCAGGAGCACCGGGGCCCTTCACGACCTCTTTCC	0.629													4	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	1	121483792	121483792	+	IGR	DEL	T	-	-			TCGA-FY-A3NN-01A-11D-A21A-08	TCGA-FY-A3NN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	94685f1a-d017-41d1-8b00-1c24ac80ee18	2275d069-2d8f-4ea6-b1af-7ea5f185b985	g.chr1:121483792delT								LOC647121 (170106 upstream) : None (None downstream)																							cgaaagagtgtttccaaactg	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	11	49059018	49059018	+	IGR	DEL	T	-	-			TCGA-FY-A3NN-01A-11D-A21A-08	TCGA-FY-A3NN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	94685f1a-d017-41d1-8b00-1c24ac80ee18	2275d069-2d8f-4ea6-b1af-7ea5f185b985	g.chr11:49059018delT								OR4A47 (547746 upstream) : FOLH1 (109170 downstream)																							ATGTTTTCTCTTTTTTTTGCA	0.313													3	6	---	---	---	---					
AMHR2	269	broad.mit.edu	37	12	53818999	53819001	+	In_Frame_Del	DEL	CTG	-	-			TCGA-FY-A3NN-01A-11D-A21A-08	TCGA-FY-A3NN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	94685f1a-d017-41d1-8b00-1c24ac80ee18	2275d069-2d8f-4ea6-b1af-7ea5f185b985	g.chr12:53818999_53819001delCTG	uc001scx.1	+	4	553_555	c.475_477delCTG	c.(475-477)CTGdel	p.L162del	AMHR2_uc009zmy.1_In_Frame_Del_p.L162del	NM_020547	NP_065434	Q16671	AMHR2_HUMAN	anti-Mullerian hormone receptor, type II isoform	162	Helical; (Potential).				Mullerian duct regression		ATP binding|hormone binding|metal ion binding			ovary(1)|skin(1)	2					Adenosine triphosphate(DB00171)	CCTCCTCCTCCTGCTGCTGCTGG	0.591									Persistant_Mullerian_Duct_Syndrome_(type_I_and_II)				7	257	---	---	---	---					
Unknown	0	broad.mit.edu	37	12	80613571	80613572	+	IGR	DEL	TT	-	-			TCGA-FY-A3NN-01A-11D-A21A-08	TCGA-FY-A3NN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	94685f1a-d017-41d1-8b00-1c24ac80ee18	2275d069-2d8f-4ea6-b1af-7ea5f185b985	g.chr12:80613571_80613572delTT								PPP1R12A (284336 upstream) : PTPRQ (224554 downstream)																							AGAAGATAACTTTTTTTTTTTT	0.351													3	4	---	---	---	---					
SACS	26278	broad.mit.edu	37	13	23914687	23914687	+	Frame_Shift_Del	DEL	T	-	-			TCGA-FY-A3NN-01A-11D-A21A-08	TCGA-FY-A3NN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	94685f1a-d017-41d1-8b00-1c24ac80ee18	2275d069-2d8f-4ea6-b1af-7ea5f185b985	g.chr13:23914687delT	uc001uon.2	-	10	3917	c.3328delA	c.(3328-3330)ATTfs	p.I1110fs	SACS_uc001uoo.2_Frame_Shift_Del_p.I963fs|SACS_uc001uop.1_Intron|SACS_uc001uoq.1_Intron	NM_014363	NP_055178	Q9NZJ4	SACS_HUMAN	sacsin	1110					cell death|negative regulation of inclusion body assembly|protein folding	axon|cell body fiber|dendrite|mitochondrion|nucleus	ATP binding|chaperone binding|Hsp70 protein binding|proteasome binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		all_cancers(29;1.51e-22)|all_epithelial(30;7.82e-19)|all_lung(29;4.71e-18)|Lung SC(185;0.0225)|Breast(139;0.128)		all cancers(112;0.00197)|Epithelial(112;0.00854)|OV - Ovarian serous cystadenocarcinoma(117;0.0298)|Lung(94;0.189)		AAGGCTTCAATTTTTTTTGCC	0.383													7	234	---	---	---	---					
TEP1	7011	broad.mit.edu	37	14	20854270	20854270	+	Frame_Shift_Del	DEL	G	-	-			TCGA-FY-A3NN-01A-11D-A21A-08	TCGA-FY-A3NN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	94685f1a-d017-41d1-8b00-1c24ac80ee18	2275d069-2d8f-4ea6-b1af-7ea5f185b985	g.chr14:20854270delG	uc001vxe.2	-	20	2986	c.2946delC	c.(2944-2946)CCCfs	p.P982fs	TEP1_uc010ahk.2_Frame_Shift_Del_p.P332fs|TEP1_uc010tlf.1_RNA|TEP1_uc010tlg.1_Frame_Shift_Del_p.P874fs	NM_007110	NP_009041	Q99973	TEP1_HUMAN	telomerase-associated protein 1	982					telomere maintenance via recombination	chromosome, telomeric region|cytoplasm|nuclear matrix|soluble fraction|telomerase holoenzyme complex	ATP binding|RNA binding			ovary(5)	5	all_cancers(95;0.00123)	all_lung(585;0.235)	Epithelial(56;7.42e-08)|all cancers(55;6.46e-07)	GBM - Glioblastoma multiforme(265;0.028)|READ - Rectum adenocarcinoma(17;0.233)		GGTTGTAGCTGGGGGGAATGT	0.557													7	238	---	---	---	---					
Unknown	0	broad.mit.edu	37	14	21189178	21189178	+	IGR	DEL	T	-	-			TCGA-FY-A3NN-01A-11D-A21A-08	TCGA-FY-A3NN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	94685f1a-d017-41d1-8b00-1c24ac80ee18	2275d069-2d8f-4ea6-b1af-7ea5f185b985	g.chr14:21189178delT								RNASE4 (20421 upstream) : EDDM3A (10682 downstream)																							TGTTGCACAAttttttttttt	0.239													7	41	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	6464804	6464805	+	IGR	INS	-	CTT	CTT	rs149974462	by1000genomes	TCGA-FY-A3NN-01A-11D-A21A-08	TCGA-FY-A3NN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	94685f1a-d017-41d1-8b00-1c24ac80ee18	2275d069-2d8f-4ea6-b1af-7ea5f185b985	g.chr17:6464804_6464805insCTT								PITPNM3 (4927 upstream) : KIAA0753 (16841 downstream)																							tcctcttcctcctcctcctcct	0.000													4	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	20397388	20397399	+	IGR	DEL	GCCGCCCCCGAT	-	-	rs71728273		TCGA-FY-A3NN-01A-11D-A21A-08	TCGA-FY-A3NN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	94685f1a-d017-41d1-8b00-1c24ac80ee18	2275d069-2d8f-4ea6-b1af-7ea5f185b985	g.chr17:20397388_20397399delGCCGCCCCCGAT								LGALS9B (26540 upstream) : CCDC144NL (369311 downstream)																							TGCGGCTGGAgccgcccccgatgccgcccccg	0.580													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	18	77393917	77393918	+	IGR	INS	-	TGG	TGG			TCGA-FY-A3NN-01A-11D-A21A-08	TCGA-FY-A3NN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	94685f1a-d017-41d1-8b00-1c24ac80ee18	2275d069-2d8f-4ea6-b1af-7ea5f185b985	g.chr18:77393917_77393918insTGG								NFATC1 (104595 upstream) : CTDP1 (45883 downstream)																							gatggtggtgatggtgatgatg	0.000													3	3	---	---	---	---					
ANKRD36	375248	broad.mit.edu	37	2	97808574	97808575	+	Splice_Site	INS	-	A	A			TCGA-FY-A3NN-01A-11D-A21A-08	TCGA-FY-A3NN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	94685f1a-d017-41d1-8b00-1c24ac80ee18	2275d069-2d8f-4ea6-b1af-7ea5f185b985	g.chr2:97808574_97808575insA	uc010yva.1	+	8	1145	c.901_splice	c.e8+2	p.V301_splice	ANKRD36_uc010yuz.1_Splice_Site|ANKRD36_uc010fic.2_Intron|ANKRD36_uc002sxo.2_Intron|ANKRD36_uc002sxp.3_Splice_Site	NM_001164315	NP_001157787	A6QL64	AN36A_HUMAN	ankyrin repeat domain 36												0						CTGGGACAGGTATTTTGGAATA	0.302													6	6	---	---	---	---					
AP1S3	130340	broad.mit.edu	37	2	224702397	224702397	+	5'Flank	DEL	C	-	-			TCGA-FY-A3NN-01A-11D-A21A-08	TCGA-FY-A3NN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	94685f1a-d017-41d1-8b00-1c24ac80ee18	2275d069-2d8f-4ea6-b1af-7ea5f185b985	g.chr2:224702397delC	uc010fwx.1	-						AP1S3_uc002vnn.2_5'Flank|AP1S3_uc010fww.2_5'Flank|AP1S3_uc002vno.2_5'Flank	NM_001039569	NP_001034658	Q96PC3	AP1S3_HUMAN	adaptor-related protein complex 1, sigma 3						endocytosis|intracellular protein transport|post-Golgi vesicle-mediated transport|regulation of defense response to virus by virus|viral reproduction	coated pit|cytoplasmic vesicle membrane|cytosol|Golgi membrane|lysosomal membrane|membrane coat	protein transporter activity				0		Renal(207;0.0112)|Lung NSC(271;0.0186)|all_lung(227;0.0272)		Epithelial(121;7.6e-10)|all cancers(144;3.62e-07)|Lung(261;0.0086)|LUSC - Lung squamous cell carcinoma(224;0.00902)		cctccccgctccccccgctcc	0.358													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	21	42275475	42275475	+	IGR	DEL	T	-	-			TCGA-FY-A3NN-01A-11D-A21A-08	TCGA-FY-A3NN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	94685f1a-d017-41d1-8b00-1c24ac80ee18	2275d069-2d8f-4ea6-b1af-7ea5f185b985	g.chr21:42275475delT								DSCAM (56436 upstream) : C21orf130 (237952 downstream)																							TGCCAGCTCCTCCCAGTGCCT	0.567													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	3	155753117	155753119	+	IGR	DEL	CTC	-	-	rs150484872	by1000genomes	TCGA-FY-A3NN-01A-11D-A21A-08	TCGA-FY-A3NN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	94685f1a-d017-41d1-8b00-1c24ac80ee18	2275d069-2d8f-4ea6-b1af-7ea5f185b985	g.chr3:155753117_155753119delCTC								GMPS (97599 upstream) : KCNAB1 (85218 downstream)																							ttttgtctttctcctcctcctcc	0.103													2	4	---	---	---	---					
MUC4	4585	broad.mit.edu	37	3	195512373	195512374	+	In_Frame_Ins	INS	-	GAT	GAT	rs140335395	by1000genomes	TCGA-FY-A3NN-01A-11D-A21A-08	TCGA-FY-A3NN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	94685f1a-d017-41d1-8b00-1c24ac80ee18	2275d069-2d8f-4ea6-b1af-7ea5f185b985	g.chr3:195512373_195512374insGAT	uc011bto.1	-	2	6537_6538	c.6077_6078insATC	c.(6076-6078)TCC>TCATCC	p.2026_2026S>SS	MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Intron	NM_018406	NP_060876	Q99102	MUC4_HUMAN	mucin 4 isoform a	798	Ser-rich.				cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity				0	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		TGTCACCAGTGGATGCTGAGGA	0.579													2	4	---	---	---	---					
GABRA2	2555	broad.mit.edu	37	4	46392073	46392073	+	5'Flank	DEL	G	-	-			TCGA-FY-A3NN-01A-11D-A21A-08	TCGA-FY-A3NN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	94685f1a-d017-41d1-8b00-1c24ac80ee18	2275d069-2d8f-4ea6-b1af-7ea5f185b985	g.chr4:46392073delG	uc003gxc.3	-						GABRA2_uc010igc.2_5'Flank|GABRA2_uc011bzc.1_5'Flank|GABRA2_uc003gxe.2_Intron|GABRA2_uc010igd.1_5'Flank	NM_001114175	NP_001107647	P47869	GBRA2_HUMAN	gamma-aminobutyric acid A receptor, alpha 2						gamma-aminobutyric acid signaling pathway|neurotransmitter transport|regulation of neurotransmitter levels	cell junction|chloride channel complex|integral to synaptic vesicle membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)|skin(2)	4					Alprazolam(DB00404)|Bromazepam(DB01558)|Diazepam(DB00829)|Ethchlorvynol(DB00189)|Fludiazepam(DB01567)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	AGCTGGGGCCGGGGGGGGAAA	0.582													3	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	49143585	49143587	+	IGR	DEL	GGA	-	-	rs144019894	by1000genomes	TCGA-FY-A3NN-01A-11D-A21A-08	TCGA-FY-A3NN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	94685f1a-d017-41d1-8b00-1c24ac80ee18	2275d069-2d8f-4ea6-b1af-7ea5f185b985	g.chr6:49143585_49143587delGGA								None (None upstream) : MUT (255407 downstream)																							aggaggaaggggaggaggaggag	0.167													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	81971624	81971626	+	IGR	DEL	GAG	-	-			TCGA-FY-A3NN-01A-11D-A21A-08	TCGA-FY-A3NN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	94685f1a-d017-41d1-8b00-1c24ac80ee18	2275d069-2d8f-4ea6-b1af-7ea5f185b985	g.chr6:81971624_81971626delGAG								BCKDHB (915637 upstream) : FAM46A (483822 downstream)																							ggagggggaagaggaggaggagg	0.192													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	116774462	116774463	+	IGR	INS	-	G	G			TCGA-FY-A3NN-01A-11D-A21A-08	TCGA-FY-A3NN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	94685f1a-d017-41d1-8b00-1c24ac80ee18	2275d069-2d8f-4ea6-b1af-7ea5f185b985	g.chr6:116774462_116774463insG								DSE (15022 upstream) : FAM26F (8093 downstream)																							ATTTTCTTTTTTACCATCTTTT	0.371													8	16	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	160132479	160132496	+	IGR	DEL	CACTCACATTGCTCTGAT	-	-	rs80151645		TCGA-FY-A3NN-01A-11D-A21A-08	TCGA-FY-A3NN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	94685f1a-d017-41d1-8b00-1c24ac80ee18	2275d069-2d8f-4ea6-b1af-7ea5f185b985	g.chr6:160132479_160132496delCACTCACATTGCTCTGAT								SOD2 (18126 upstream) : WTAP (15633 downstream)																							ccataaccaccactcacattgctctgatcaccataacc	0.000													20	119	---	---	---	---					
Unknown	0	broad.mit.edu	37	8	216248	216248	+	IGR	DEL	G	-	-			TCGA-FY-A3NN-01A-11D-A21A-08	TCGA-FY-A3NN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	94685f1a-d017-41d1-8b00-1c24ac80ee18	2275d069-2d8f-4ea6-b1af-7ea5f185b985	g.chr8:216248delG								ZNF596 (18916 upstream) : FBXO25 (140560 downstream)																							GTGTCCACCTGGGGGGGGGTC	0.726													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	136624831	136624865	+	IGR	DEL	CGGAGCGAGGGGAGGGGCGGAGCGAGGGGGAGGGA	-	-	rs61083985		TCGA-FY-A3NN-01A-11D-A21A-08	TCGA-FY-A3NN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	94685f1a-d017-41d1-8b00-1c24ac80ee18	2275d069-2d8f-4ea6-b1af-7ea5f185b985	g.chr9:136624831_136624865delCGGAGCGAGGGGAGGGGCGGAGCGAGGGGGAGGGA								SARDH (19754 upstream) : VAV2 (2152 downstream)																							gggggaggggcggagcgaggggaggggcggagcgagggggagggacggagcgggg	0.132													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	M	310	310	+	RNA	DEL	T	-	-			TCGA-FY-A3NN-01A-11D-A21A-08	TCGA-FY-A3NN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	94685f1a-d017-41d1-8b00-1c24ac80ee18	2275d069-2d8f-4ea6-b1af-7ea5f185b985	g.chrM:310delT	uc004coq.3	-	2		c.59delA			uc004cor.1_5'Flank|uc004cos.3_5'Flank					Homo sapiens cDNA: FLJ22857 fis, clone KAT01615.																		AAACCCCCCCCTCCCCCCGCT	0.408													7	74	---	---	---	---					
Unknown	0	broad.mit.edu	37	X	8434959	8434959	+	IGR	DEL	G	-	-			TCGA-FY-A3NN-01A-11D-A21A-08	TCGA-FY-A3NN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	94685f1a-d017-41d1-8b00-1c24ac80ee18	2275d069-2d8f-4ea6-b1af-7ea5f185b985	g.chrX:8434959delG								VCX3B (409 upstream) : KAL1 (61957 downstream)																							gagggagggagggaggaagag	0.000													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	Y	10029124	10029124	+	IGR	DEL	G	-	-			TCGA-FY-A3NN-01A-11D-A21A-08	TCGA-FY-A3NN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	94685f1a-d017-41d1-8b00-1c24ac80ee18	2275d069-2d8f-4ea6-b1af-7ea5f185b985	g.chrY:10029124delG								TTTY22 (378270 upstream) : None (None downstream)																							ACCAGTTTTTGGTTTATTTTG	0.408													2	4	---	---	---	---					
