Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
FBXO44	93611	broad.mit.edu	37	1	11718892	11718892	+	Silent	SNP	G	A	A			TCGA-FY-A3W9-01A-11D-A22D-08	TCGA-FY-A3W9-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	394b10da-aa66-49cb-8448-6c82165ae22a	c2b952ae-aee7-4ac2-a122-bea1eead79f5	g.chr1:11718892G>A	uc001asm.2	+	5	714	c.588G>A	c.(586-588)GCG>GCA	p.A196A	FBXO44_uc001ask.2_Missense_Mutation_p.D155N|FBXO44_uc001asl.2_Silent_p.A196A|FBXO44_uc001asn.2_Missense_Mutation_p.D155N|FBXO44_uc010oar.1_Missense_Mutation_p.D187N|FBXO44_uc010oas.1_Silent_p.A56A	NM_033182	NP_149438	Q9H4M3	FBX44_HUMAN	F-box protein 44 isoform 1	196	FBA.				protein catabolic process	SCF ubiquitin ligase complex	protein binding			ovary(1)	1	Ovarian(185;0.249)	Lung NSC(185;4.15e-05)|all_lung(284;4.76e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.41e-06)|COAD - Colon adenocarcinoma(227;0.000255)|BRCA - Breast invasive adenocarcinoma(304;0.0003)|Kidney(185;0.000758)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(313;0.00727)|READ - Rectum adenocarcinoma(331;0.0649)		CAGACCCGGCGACCATCCAGC	0.617000													53	42	---	---	---	---	0	0	1	0	0
NRAS	4893	broad.mit.edu	37	1	115256529	115256529	+	Missense_Mutation	SNP	T	C	C	rs11554290		TCGA-FY-A3W9-01A-11D-A22D-08	TCGA-FY-A3W9-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	394b10da-aa66-49cb-8448-6c82165ae22a	c2b952ae-aee7-4ac2-a122-bea1eead79f5	g.chr1:115256529T>C	uc009wgu.2	-	3	436	c.182A>G	c.(181-183)CAA>CGA	p.Q61R		NM_002524	NP_002515	P01111	RASN_HUMAN	neuroblastoma RAS viral (v-ras) oncogene homolog	61	GTP.		Q -> K (in neuroblastoma cell).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	Golgi membrane|plasma membrane	GTP binding|GTPase activity	p.Q61R(757)|p.Q61K(537)|p.Q61L(147)|p.Q61H(95)|p.Q61P(21)|p.Q61E(9)|p.Q61?(4)|p.Q61Q(3)|p.Q61_E62>HK(1)		haematopoietic_and_lymphoid_tissue(1008)|skin(956)|thyroid(334)|large_intestine(62)|NS(60)|soft_tissue(32)|lung(31)|upper_aerodigestive_tract(25)|urinary_tract(12)|liver(10)|adrenal_gland(9)|autonomic_ganglia(8)|testis(8)|central_nervous_system(8)|prostate(8)|breast(7)|biliary_tract(6)|ovary(6)|stomach(5)|pancreas(5)|endometrium(2)|kidney(2)|cervix(2)|eye(1)	2607	all_epithelial(7;5.11e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		GTACTCTTCTTGTCCAGCTGT	0.458000	Q61L(HEPG2_LIVER)|Q61R(SKMEL2_SKIN)|Q61R(KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(IPC298_SKIN)|Q61P(TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(MHHES1_BONE)|Q61R(HT1197_URINARY_TRACT)|Q61L(MELJUSO_SKIN)|Q61R(ONS76_CENTRAL_NERVOUS_SYSTEM)|Q61R(KU1919_URINARY_TRACT)|Q61L(C3A_LIVER)|Q61R(TT2609C02_THYROID)|Q61R(NCIH2347_LUNG)|Q61L(KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61R(SW1271_LUNG)|Q61L(HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)	50	Mis		melanoma|MM|AML|thyroid				Noonan_syndrome	TSP Lung(23;0.16)|Multiple Myeloma(1;<1E-6)			81	96	---	---	---	---	0	0	1	0	0
PHGDH	26227	broad.mit.edu	37	1	120286533	120286533	+	Missense_Mutation	SNP	G	T	T			TCGA-FY-A3W9-01A-11D-A22D-08	TCGA-FY-A3W9-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	394b10da-aa66-49cb-8448-6c82165ae22a	c2b952ae-aee7-4ac2-a122-bea1eead79f5	g.chr1:120286533G>T	uc001ehz.2	+	12	1699	c.1472G>T	c.(1471-1473)CGG>CTG	p.R491L	PHGDH_uc009whm.2_Missense_Mutation_p.R389L|PHGDH_uc001eia.2_Missense_Mutation_p.R490L|PHGDH_uc009whn.2_Missense_Mutation_p.R368L|PHGDH_uc001eib.2_Missense_Mutation_p.R457L|PHGDH_uc001eic.2_RNA	NM_006623	NP_006614	O43175	SERA_HUMAN	phosphoglycerate dehydrogenase	491					brain development|L-serine biosynthetic process		electron carrier activity|NAD binding|phosphoglycerate dehydrogenase activity			ovary(1)	1	all_cancers(5;1.18e-09)|all_epithelial(5;2.16e-10)|Melanoma(3;1.93e-05)|all_neural(166;0.219)	all_lung(203;3.66e-05)|Lung NSC(69;0.000202)|all_epithelial(167;0.0347)		Lung(183;0.0111)|LUSC - Lung squamous cell carcinoma(189;0.0593)	NADH(DB00157)	GCAGGCGTGCGGCTGCTGTCC	0.582000											OREG0013728	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	12	128	---	---	---	---	0.000978159	0.000978159	1	1	0
SUSD4	55061	broad.mit.edu	37	1	223441914	223441914	+	Silent	SNP	G	A	A			TCGA-FY-A3W9-01A-11D-A22D-08	TCGA-FY-A3W9-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	394b10da-aa66-49cb-8448-6c82165ae22a	c2b952ae-aee7-4ac2-a122-bea1eead79f5	g.chr1:223441914G>A	uc001hnx.2	-	3	1099	c.465C>T	c.(463-465)TAC>TAT	p.Y155Y	SUSD4_uc001hny.3_Silent_p.Y155Y|SUSD4_uc010puw.1_5'UTR|SUSD4_uc001hnz.2_Silent_p.Y155Y|SUSD4_uc010pux.1_Silent_p.Y84Y	NM_017982	NP_060452	Q5VX71	SUSD4_HUMAN	sushi domain containing 4 isoform a	155	Sushi 2.|Extracellular (Potential).					integral to membrane					0				GBM - Glioblastoma multiforme(131;0.0611)		GTAGGTCGGGGTACCGGATCT	0.448000													3	76	---	---	---	---	0	0	1	0	0
CHRM3	1131	broad.mit.edu	37	1	240071606	240071606	+	Silent	SNP	C	A	A			TCGA-FY-A3W9-01A-11D-A22D-08	TCGA-FY-A3W9-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	394b10da-aa66-49cb-8448-6c82165ae22a	c2b952ae-aee7-4ac2-a122-bea1eead79f5	g.chr1:240071606C>A	uc001hyp.2	+	5	1634	c.855C>A	c.(853-855)GGC>GGA	p.G285G		NM_000740	NP_000731	P20309	ACM3_HUMAN	cholinergic receptor, muscarinic 3	285	Cytoplasmic (By similarity).				cell proliferation|energy reserve metabolic process|nervous system development|protein modification process|regulation of insulin secretion	basolateral plasma membrane|cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(1)	5	Ovarian(103;0.127)	all_cancers(173;0.00567)|all_neural(198;0.203)	OV - Ovarian serous cystadenocarcinoma(106;0.00989)		Anisotropine Methylbromide(DB00517)|Atropine(DB00572)|Benzquinamide(DB00767)|Cevimeline(DB00185)|Cryptenamine(DB00785)|Cyclizine(DB01176)|Darifenacin(DB00496)|Diphemanil Methylsulfate(DB00729)|Diphenidol(DB01231)|Homatropine Methylbromide(DB00725)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Olanzapine(DB00334)|Oxybutynin(DB01062)|Oxyphencyclimine(DB00383)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Solifenacin(DB01591)|Thiethylperazine(DB00372)|Tiotropium(DB01409)|Tolterodine(DB01036)|Tridihexethyl(DB00505)	ACCCCACGGGCAGTTCTCGAA	0.517000													16	21	---	---	---	---	1.3612e-06	1.45508e-06	1	1	0
CALCB	797	broad.mit.edu	37	11	15096620	15096620	+	Missense_Mutation	SNP	A	G	G			TCGA-FY-A3W9-01A-11D-A22D-08	TCGA-FY-A3W9-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	394b10da-aa66-49cb-8448-6c82165ae22a	c2b952ae-aee7-4ac2-a122-bea1eead79f5	g.chr11:15096620A>G	uc001mlx.1	+	3	173	c.100A>G	c.(100-102)AGC>GGC	p.S34G	CALCB_uc009ygr.1_Missense_Mutation_p.S34G	NM_000728	NP_000719	P10092	CALCB_HUMAN	calcitonin-related polypeptide, beta precursor	34					cellular calcium ion homeostasis|signal transduction|vasodilation	extracellular region|soluble fraction	neuropeptide hormone activity				0						TGCCCTGGAGAGCAGCCCAGA	0.617000											OREG0020793	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	42	57	---	---	---	---	0	0	1	0	0
SACS	26278	broad.mit.edu	37	13	23904954	23904954	+	Missense_Mutation	SNP	T	A	A			TCGA-FY-A3W9-01A-11D-A22D-08	TCGA-FY-A3W9-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	394b10da-aa66-49cb-8448-6c82165ae22a	c2b952ae-aee7-4ac2-a122-bea1eead79f5	g.chr13:23904954T>A	uc001uon.2	-	10	13650	c.13061A>T	c.(13060-13062)CAT>CTT	p.H4354L	SACS_uc001uoo.2_Missense_Mutation_p.H4207L|SACS_uc001uop.1_Intron|SACS_uc001uoq.1_Intron	NM_014363	NP_055178	Q9NZJ4	SACS_HUMAN	sacsin	4354	J.				cell death|negative regulation of inclusion body assembly|protein folding	axon|cell body fiber|dendrite|mitochondrion|nucleus	ATP binding|chaperone binding|Hsp70 protein binding|proteasome binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		all_cancers(29;1.51e-22)|all_epithelial(30;7.82e-19)|all_lung(29;4.71e-18)|Lung SC(185;0.0225)|Breast(139;0.128)		all cancers(112;0.00197)|Epithelial(112;0.00854)|OV - Ovarian serous cystadenocarcinoma(117;0.0298)|Lung(94;0.189)		ATTCTGCAAATGTTTAAAAAC	0.383000													40	6	---	---	---	---	0	0	1	0	0
MYH7	4625	broad.mit.edu	37	14	23887535	23887535	+	Silent	SNP	C	T	T			TCGA-FY-A3W9-01A-11D-A22D-08	TCGA-FY-A3W9-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	394b10da-aa66-49cb-8448-6c82165ae22a	c2b952ae-aee7-4ac2-a122-bea1eead79f5	g.chr14:23887535C>T	uc001wjx.2	-	30	4159	c.4053G>A	c.(4051-4053)ACG>ACA	p.T1351T	MIR208B_hsa-mir-208b|MI0005570_5'Flank	NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	1351	Potential.				adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		CCTTGGCCTCCGTCTCCTCCT	0.672000													3	110	---	---	---	---	0	0	1	0	0
PKD1	5310	broad.mit.edu	37	16	2160529	2160529	+	Missense_Mutation	SNP	G	A	A			TCGA-FY-A3W9-01A-11D-A22D-08	TCGA-FY-A3W9-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	394b10da-aa66-49cb-8448-6c82165ae22a	c2b952ae-aee7-4ac2-a122-bea1eead79f5	g.chr16:2160529G>A	uc002cos.1	-	15	4848	c.4639C>T	c.(4639-4641)CGC>TGC	p.R1547C	PKD1_uc002cot.1_Missense_Mutation_p.R1547C	NM_001009944	NP_001009944	P98161	PKD1_HUMAN	polycystin 1 isoform 1 precursor	1547	Extracellular (Potential).|PKD 10.				calcium-independent cell-matrix adhesion|homophilic cell adhesion|neuropeptide signaling pathway	basolateral plasma membrane|integral to plasma membrane	protein domain specific binding|sugar binding			central_nervous_system(2)|skin(1)	3						CCCCGCACGCGCCGCTTCACC	0.647000													3	104	---	---	---	---	0	0	1	0	0
SPHK1	8877	broad.mit.edu	37	17	74383472	74383472	+	Silent	SNP	A	G	G			TCGA-FY-A3W9-01A-11D-A22D-08	TCGA-FY-A3W9-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	394b10da-aa66-49cb-8448-6c82165ae22a	c2b952ae-aee7-4ac2-a122-bea1eead79f5	g.chr17:74383472A>G	uc002jrf.1	+	8	1769	c.960A>G	c.(958-960)GTA>GTG	p.V320V	SPHK1_uc002jrg.1_Silent_p.V269V|SPHK1_uc002jrh.2_Silent_p.V334V|SPHK1_uc002jrj.2_Silent_p.V406V|SPHK1_uc002jri.2_Silent_p.V320V|SPHK1_uc002jrk.3_Silent_p.V320V|uc010wtd.1_RNA	NM_001142602	NP_001136074	Q9NYA1	SPHK1_HUMAN	sphingosine kinase 1 isoform 3	320					'de novo' posttranslational protein folding|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|anti-apoptosis|calcium-mediated signaling|positive regulation of angiogenesis|positive regulation of cell growth|positive regulation of cell migration|positive regulation of fibroblast proliferation|positive regulation of mitotic cell cycle|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of protein ubiquitination|positive regulation of smooth muscle contraction|regulation of tumor necrosis factor-mediated signaling pathway|sphingoid catabolic process|sphingosine metabolic process	cytosol|membrane fraction|nucleus|plasma membrane|soluble fraction	ATP binding|calmodulin binding|D-erythro-sphingosine kinase activity|diacylglycerol kinase activity|DNA binding|magnesium ion binding|protein phosphatase 2A binding|sphinganine kinase activity			kidney(1)	1						CCTACTTGGTATATGTGCCCG	0.592000													25	31	---	---	---	---	0	0	1	0	0
CNGA3	1261	broad.mit.edu	37	2	98999896	98999896	+	Silent	SNP	G	A	A			TCGA-FY-A3W9-01A-11D-A22D-08	TCGA-FY-A3W9-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	394b10da-aa66-49cb-8448-6c82165ae22a	c2b952ae-aee7-4ac2-a122-bea1eead79f5	g.chr2:98999896G>A	uc002syt.2	+	5	858	c.441G>A	c.(439-441)ACG>ACA	p.T147T	CNGA3_uc002syu.2_Intron|CNGA3_uc010fij.2_Silent_p.T151T	NM_001298	NP_001289	Q16281	CNGA3_HUMAN	cyclic nucleotide gated channel alpha 3 isoform	147					signal transduction|visual perception	integral to membrane	cGMP binding			ovary(5)|upper_aerodigestive_tract(1)	6						GCAACAACACGGAGGAGGAGT	0.587000													15	81	---	---	---	---	0	0	1	0	0
CCDC108	255101	broad.mit.edu	37	2	219890815	219890815	+	Missense_Mutation	SNP	G	A	A	rs141456868	by1000genomes	TCGA-FY-A3W9-01A-11D-A22D-08	TCGA-FY-A3W9-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	394b10da-aa66-49cb-8448-6c82165ae22a	c2b952ae-aee7-4ac2-a122-bea1eead79f5	g.chr2:219890815G>A	uc002vjl.1	-	14	2362	c.2278C>T	c.(2278-2280)CGG>TGG	p.R760W		NM_194302	NP_919278	Q6ZU64	CC108_HUMAN	coiled-coil domain containing 108 isoform 1	760						integral to membrane	structural molecule activity			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4		Renal(207;0.0915)		Epithelial(149;1.12e-06)|all cancers(144;0.000196)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CCTCGTGCCCGCACCGTCAGG	0.592000													4	89	---	---	---	---	0	0	1	0	0
COL6A3	1293	broad.mit.edu	37	2	238280890	238280890	+	Missense_Mutation	SNP	C	T	T			TCGA-FY-A3W9-01A-11D-A22D-08	TCGA-FY-A3W9-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	394b10da-aa66-49cb-8448-6c82165ae22a	c2b952ae-aee7-4ac2-a122-bea1eead79f5	g.chr2:238280890C>T	uc002vwl.2	-	9	4055	c.3770G>A	c.(3769-3771)AGG>AAG	p.R1257K	COL6A3_uc002vwo.2_Missense_Mutation_p.R1051K|COL6A3_uc010znj.1_Missense_Mutation_p.R650K|COL6A3_uc002vwq.2_Missense_Mutation_p.R1051K|COL6A3_uc002vwr.2_Missense_Mutation_p.R850K	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	1257	VWFA 7.|Nonhelical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		GTCAACCAGCCTCTCTATGAG	0.582000													5	52	---	---	---	---	0	0	1	0	0
UBP1	7342	broad.mit.edu	37	3	33454278	33454278	+	Silent	SNP	G	A	A	rs143011066		TCGA-FY-A3W9-01A-11D-A22D-08	TCGA-FY-A3W9-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	394b10da-aa66-49cb-8448-6c82165ae22a	c2b952ae-aee7-4ac2-a122-bea1eead79f5	g.chr3:33454278G>A	uc003cfq.3	-	4	914	c.384C>T	c.(382-384)TAC>TAT	p.Y128Y	UBP1_uc003cfr.3_Silent_p.Y128Y|UBP1_uc010hga.2_Silent_p.Y128Y	NM_014517	NP_055332	Q9NZI7	UBIP1_HUMAN	upstream binding protein 1 (LBP-1a) isoform a	128					negative regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|viral genome replication	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			kidney(2)	2						GATGCTCTGTGTATTGTAGCC	0.453000													4	144	---	---	---	---	0	0	1	0	0
WDFY3	23001	broad.mit.edu	37	4	85639709	85639709	+	Silent	SNP	G	A	A			TCGA-FY-A3W9-01A-11D-A22D-08	TCGA-FY-A3W9-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	394b10da-aa66-49cb-8448-6c82165ae22a	c2b952ae-aee7-4ac2-a122-bea1eead79f5	g.chr4:85639709G>A	uc003hpd.2	-	48	8028	c.7620C>T	c.(7618-7620)TAC>TAT	p.Y2540Y	WDFY3_uc003hpe.1_Silent_p.Y151Y	NM_014991	NP_055806	Q8IZQ1	WDFY3_HUMAN	WD repeat and FYVE domain containing 3 isoform	2540						cytoplasmic part|extrinsic to membrane|nuclear envelope	1-phosphatidylinositol binding|metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000808)		GAGCACAGCGGTACATGTGTT	0.408000													3	56	---	---	---	---	0	0	1	0	0
KIAA0947	23379	broad.mit.edu	37	5	5462371	5462371	+	Missense_Mutation	SNP	C	T	T			TCGA-FY-A3W9-01A-11D-A22D-08	TCGA-FY-A3W9-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	394b10da-aa66-49cb-8448-6c82165ae22a	c2b952ae-aee7-4ac2-a122-bea1eead79f5	g.chr5:5462371C>T	uc003jdm.3	+	13	3146	c.2924C>T	c.(2923-2925)GCT>GTT	p.A975V		NM_015325	NP_056140	Q9Y2F5	K0947_HUMAN	hypothetical protein LOC23379	975										ovary(1)|central_nervous_system(1)	2						GTGAGAGAAGCTGCAGTGCAG	0.478000													9	11	---	---	---	---	0	0	1	0	0
DDX4	54514	broad.mit.edu	37	5	55088550	55088550	+	Nonsense_Mutation	SNP	A	T	T			TCGA-FY-A3W9-01A-11D-A22D-08	TCGA-FY-A3W9-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	394b10da-aa66-49cb-8448-6c82165ae22a	c2b952ae-aee7-4ac2-a122-bea1eead79f5	g.chr5:55088550A>T	uc003jqg.3	+	17	1458	c.1384A>T	c.(1384-1386)AAG>TAG	p.K462*	DDX4_uc010ivz.2_Nonsense_Mutation_p.K442*|DDX4_uc003jqh.3_Nonsense_Mutation_p.K428*|DDX4_uc003jqj.2_Nonsense_Mutation_p.K313*	NM_001136034	NP_001129506	Q9NQI0	DDX4_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform	462	Helicase ATP-binding.				multicellular organismal development|sperm motility	perinuclear region of cytoplasm|pi-body|piP-body	ATP binding|ATP-dependent helicase activity|nucleic acid binding			ovary(1)|skin(1)	2		Lung NSC(810;6.93e-05)|all_neural(839;0.00409)|Prostate(74;0.0107)|Breast(144;0.0544)|Ovarian(174;0.223)				AGAAATGAAGAAGTTAATTTC	0.363000													31	34	---	---	---	---	0	0	1	0	0
KIF4B	285643	broad.mit.edu	37	5	154394056	154394056	+	Missense_Mutation	SNP	C	T	T			TCGA-FY-A3W9-01A-11D-A22D-08	TCGA-FY-A3W9-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	394b10da-aa66-49cb-8448-6c82165ae22a	c2b952ae-aee7-4ac2-a122-bea1eead79f5	g.chr5:154394056C>T	uc010jih.1	+	1	797	c.637C>T	c.(637-639)CAT>TAT	p.H213Y		NM_001099293	NP_001092763	Q2VIQ3	KIF4B_HUMAN	kinesin family member 4B	213	Kinesin-motor.				axon guidance|blood coagulation|microtubule-based movement	cytosol|microtubule|nuclear matrix	ATP binding|DNA binding|microtubule motor activity			ovary(1)	1	Renal(175;0.00488)	Medulloblastoma(196;0.0523)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			GTCCCGATCTCATGCCATCTT	0.468000													40	34	---	---	---	---	0	0	1	0	0
ADAMTS2	9509	broad.mit.edu	37	5	178579222	178579222	+	Missense_Mutation	SNP	C	T	T			TCGA-FY-A3W9-01A-11D-A22D-08	TCGA-FY-A3W9-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	394b10da-aa66-49cb-8448-6c82165ae22a	c2b952ae-aee7-4ac2-a122-bea1eead79f5	g.chr5:178579222C>T	uc003mjw.2	-	10	1550	c.1550G>A	c.(1549-1551)TGC>TAC	p.C517Y	ADAMTS2_uc011dgm.1_Missense_Mutation_p.C517Y	NM_014244	NP_055059	O95450	ATS2_HUMAN	ADAM metallopeptidase with thrombospondin type 1	517	Disintegrin.				collagen catabolic process	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4	all_cancers(89;0.000456)|all_epithelial(37;0.000138)|Renal(175;0.000159)|Lung NSC(126;0.00184)|all_lung(126;0.00326)	all_cancers(40;0.00604)|all_neural(177;0.00411)|Medulloblastoma(196;0.00508)|Lung NSC(249;0.0569)|all_lung(500;0.129)|all_hematologic(541;0.211)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	GBM - Glioblastoma multiforme(465;0.0473)		AGGATGGCTGCACCACAGCTG	0.607000													15	19	---	---	---	---	0	0	1	0	0
C6orf146	222826	broad.mit.edu	37	6	4069773	4069773	+	Silent	SNP	T	C	C			TCGA-FY-A3W9-01A-11D-A22D-08	TCGA-FY-A3W9-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	394b10da-aa66-49cb-8448-6c82165ae22a	c2b952ae-aee7-4ac2-a122-bea1eead79f5	g.chr6:4069773T>C	uc003mvx.2	-	7	1024	c.684A>G	c.(682-684)CCA>CCG	p.P228P	C6orf146_uc010jnq.1_Intron|C6orf146_uc003mvy.2_Silent_p.P165P	NM_173563	NP_775834	Q8IXS0	CF146_HUMAN	hypothetical protein LOC222826	228										ovary(1)	1	Ovarian(93;0.0925)	all_hematologic(90;0.108)				TTATTGTTTCTGGCTTCAAGT	0.368000													10	99	---	---	---	---	0	0	1	0	0
CRISP2	7180	broad.mit.edu	37	6	49665595	49665595	+	Missense_Mutation	SNP	A	T	T			TCGA-FY-A3W9-01A-11D-A22D-08	TCGA-FY-A3W9-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	394b10da-aa66-49cb-8448-6c82165ae22a	c2b952ae-aee7-4ac2-a122-bea1eead79f5	g.chr6:49665595A>T	uc003ozq.2	-	8	749	c.493T>A	c.(493-495)TAT>AAT	p.Y165N	CRISP2_uc003ozl.2_Missense_Mutation_p.Y165N|CRISP2_uc003ozn.2_Missense_Mutation_p.Y165N|CRISP2_uc003ozr.2_Missense_Mutation_p.Y165N|CRISP2_uc003ozo.2_Missense_Mutation_p.Y165N|CRISP2_uc003ozm.2_Missense_Mutation_p.Y165N|CRISP2_uc003ozp.2_Missense_Mutation_p.Y165N	NM_001142408	NP_001135880	P16562	CRIS2_HUMAN	cysteine-rich secretory protein 2 precursor	165						extracellular space				skin(1)	1	Lung NSC(77;0.0161)		KIRC - Kidney renal clear cell carcinoma(2;0.106)|Kidney(12;0.156)			TGGCAAACATAGTAGTATTTT	0.328000													62	92	---	---	---	---	0	0	1	0	0
CYB5R4	51167	broad.mit.edu	37	6	84634311	84634311	+	Missense_Mutation	SNP	G	A	A			TCGA-FY-A3W9-01A-11D-A22D-08	TCGA-FY-A3W9-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	394b10da-aa66-49cb-8448-6c82165ae22a	c2b952ae-aee7-4ac2-a122-bea1eead79f5	g.chr6:84634311G>A	uc003pkf.2	+	10	946	c.814G>A	c.(814-816)GGT>AGT	p.G272S		NM_016230	NP_057314	Q7L1T6	NB5R4_HUMAN	cytochrome b5 reductase 4	272					cell development|detection of oxygen|generation of precursor metabolites and energy|glucose homeostasis|insulin secretion|response to antibiotic|superoxide metabolic process	endoplasmic reticulum|perinuclear region of cytoplasm	cytochrome-b5 reductase activity|heme binding|NAD(P)H oxidase activity			breast(2)	2		all_cancers(76;7e-07)|Acute lymphoblastic leukemia(125;2.69e-07)|all_hematologic(105;0.000151)|all_epithelial(107;0.00128)		BRCA - Breast invasive adenocarcinoma(397;0.0871)		GAAAGATACAGGTATGCTGTG	0.348000													68	98	---	---	---	---	0	0	1	0	0
HBS1L	10767	broad.mit.edu	37	6	135287541	135287541	+	Missense_Mutation	SNP	T	C	C			TCGA-FY-A3W9-01A-11D-A22D-08	TCGA-FY-A3W9-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	394b10da-aa66-49cb-8448-6c82165ae22a	c2b952ae-aee7-4ac2-a122-bea1eead79f5	g.chr6:135287541T>C	uc003qez.2	-	17	2176	c.1969A>G	c.(1969-1971)AAA>GAA	p.K657E	HBS1L_uc003qey.2_Missense_Mutation_p.K493E|HBS1L_uc011ecy.1_Missense_Mutation_p.K381E|HBS1L_uc011ecz.1_Missense_Mutation_p.K493E|HBS1L_uc011eda.1_Missense_Mutation_p.K615E	NM_006620	NP_006611	Q9Y450	HBS1L_HUMAN	Hsp70 subfamily B suppressor 1-like protein	657					signal transduction		GTP binding|GTPase activity|translation elongation factor activity			skin(2)	2	Colorectal(23;0.221)			OV - Ovarian serous cystadenocarcinoma(155;0.0046)|GBM - Glioblastoma multiforme(68;0.00702)		TTAAAGTCTTTATATAGCTCA	0.363000													6	160	---	---	---	---	0	0	1	0	0
ESCO2	157570	broad.mit.edu	37	8	27634109	27634109	+	Missense_Mutation	SNP	A	G	G			TCGA-FY-A3W9-01A-11D-A22D-08	TCGA-FY-A3W9-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	394b10da-aa66-49cb-8448-6c82165ae22a	c2b952ae-aee7-4ac2-a122-bea1eead79f5	g.chr8:27634109A>G	uc003xgg.2	+	3	367	c.284A>G	c.(283-285)AAT>AGT	p.N95S	ESCO2_uc010luy.1_RNA|ESCO2_uc003xgh.2_Missense_Mutation_p.N95S	NM_001017420	NP_001017420	Q56NI9	ESCO2_HUMAN	establishment of cohesion 1 homolog 2	95					cell cycle|post-translational protein acetylation|regulation of DNA replication	chromatin|nucleus	acyltransferase activity|metal ion binding			central_nervous_system(1)	1		Ovarian(32;0.000953)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0204)|KIRC - Kidney renal clear cell carcinoma(542;0.0955)|Kidney(114;0.115)|Colorectal(74;0.132)		TGGTACCTCAATCCACTGGAG	0.358000									SC_Phocomelia_syndrome				7	44	---	---	---	---	0	0	1	0	0
CA13	377677	broad.mit.edu	37	8	86178909	86178909	+	Missense_Mutation	SNP	G	A	A			TCGA-FY-A3W9-01A-11D-A22D-08	TCGA-FY-A3W9-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	394b10da-aa66-49cb-8448-6c82165ae22a	c2b952ae-aee7-4ac2-a122-bea1eead79f5	g.chr8:86178909G>A	uc003ydg.2	+	4	769	c.427G>A	c.(427-429)GCT>ACT	p.A143T	CA13_uc003ydf.1_RNA	NM_198584	NP_940986	Q8N1Q1	CAH13_HUMAN	carbonic anhydrase XIII	143					one-carbon metabolic process		carbonate dehydratase activity|zinc ion binding				0						AGATGGACTGGCTGTCTTGGG	0.418000													38	38	---	---	---	---	0	0	1	0	0
Unknown	0	broad.mit.edu	37	10	42383710	42383711	+	IGR	INS	-	T	T			TCGA-FY-A3W9-01A-11D-A22D-08	TCGA-FY-A3W9-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	394b10da-aa66-49cb-8448-6c82165ae22a	c2b952ae-aee7-4ac2-a122-bea1eead79f5	g.chr10:42383710_42383711insT								None (None upstream) : LOC441666 (443604 downstream)																							atcaaatggaatcaaaataacc	0.000													12	192	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42385707	42385722	+	IGR	DEL	AATGGAATCATCATTA	-	-	rs33914712		TCGA-FY-A3W9-01A-11D-A22D-08	TCGA-FY-A3W9-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	394b10da-aa66-49cb-8448-6c82165ae22a	c2b952ae-aee7-4ac2-a122-bea1eead79f5	g.chr10:42385707_42385722delAATGGAATCATCATTA								None (None upstream) : LOC441666 (441593 downstream)																							aatggaatcgaatggaatcatcattaaatggaatca	0.042													29	231	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42391470	42391470	+	IGR	DEL	T	-	-	rs28839468		TCGA-FY-A3W9-01A-11D-A22D-08	TCGA-FY-A3W9-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	394b10da-aa66-49cb-8448-6c82165ae22a	c2b952ae-aee7-4ac2-a122-bea1eead79f5	g.chr10:42391470delT								None (None upstream) : LOC441666 (435845 downstream)																							tcaaacggaatcaaacggaat	0.000													7	1031	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42392726	42392748	+	IGR	DEL	AATCGAATGGAATTATCGAATGC	-	-	rs67625628		TCGA-FY-A3W9-01A-11D-A22D-08	TCGA-FY-A3W9-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	394b10da-aa66-49cb-8448-6c82165ae22a	c2b952ae-aee7-4ac2-a122-bea1eead79f5	g.chr10:42392726_42392748delAATCGAATGGAATTATCGAATGC								None (None upstream) : LOC441666 (434567 downstream)																							cctcaaatggaatcgaatggaattatcgaatgcaatcgaatgg	0.000													22	3508	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42400410	42400410	+	IGR	DEL	C	-	-	rs74186261		TCGA-FY-A3W9-01A-11D-A22D-08	TCGA-FY-A3W9-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	394b10da-aa66-49cb-8448-6c82165ae22a	c2b952ae-aee7-4ac2-a122-bea1eead79f5	g.chr10:42400410delC								None (None upstream) : LOC441666 (426905 downstream)																							aacgggatttcttcacataat	0.000													39	370	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42400487	42400487	+	IGR	DEL	C	-	-			TCGA-FY-A3W9-01A-11D-A22D-08	TCGA-FY-A3W9-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	394b10da-aa66-49cb-8448-6c82165ae22a	c2b952ae-aee7-4ac2-a122-bea1eead79f5	g.chr10:42400487delC								None (None upstream) : LOC441666 (426828 downstream)																							gttgaaccttcctttagacag	0.000													9	1040	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42600053	42600053	+	IGR	DEL	T	-	-			TCGA-FY-A3W9-01A-11D-A22D-08	TCGA-FY-A3W9-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	394b10da-aa66-49cb-8448-6c82165ae22a	c2b952ae-aee7-4ac2-a122-bea1eead79f5	g.chr10:42600053delT								None (None upstream) : LOC441666 (227262 downstream)																							ttgaacggaattgaatggaat	0.000													16	1063	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42600174	42600174	+	IGR	DEL	A	-	-	rs71503913		TCGA-FY-A3W9-01A-11D-A22D-08	TCGA-FY-A3W9-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	394b10da-aa66-49cb-8448-6c82165ae22a	c2b952ae-aee7-4ac2-a122-bea1eead79f5	g.chr10:42600174delA								None (None upstream) : LOC441666 (227141 downstream)																							ttatggaatgaaatccaatgt	0.000													7	1838	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42681216	42681216	+	IGR	DEL	T	-	-			TCGA-FY-A3W9-01A-11D-A22D-08	TCGA-FY-A3W9-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	394b10da-aa66-49cb-8448-6c82165ae22a	c2b952ae-aee7-4ac2-a122-bea1eead79f5	g.chr10:42681216delT								None (None upstream) : LOC441666 (146099 downstream)																							CTTATTACTGTCAACAGAGTG	0.488													11	228	---	---	---	---					
KDM2A	22992	broad.mit.edu	37	11	66995593	66995593	+	Frame_Shift_Del	DEL	C	-	-			TCGA-FY-A3W9-01A-11D-A22D-08	TCGA-FY-A3W9-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	394b10da-aa66-49cb-8448-6c82165ae22a	c2b952ae-aee7-4ac2-a122-bea1eead79f5	g.chr11:66995593delC	uc001ojw.2	+	11	1907	c.1043delC	c.(1042-1044)TCCfs	p.S348fs	KDM2A_uc001ojx.2_RNA|KDM2A_uc001ojy.2_Frame_Shift_Del_p.S42fs	NM_012308	NP_036440	Q9Y2K7	KDM2A_HUMAN	F-box and leucine-rich repeat protein 11	348					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	DNA binding|histone demethylase activity (H3-K36 specific)|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|zinc ion binding			ovary(4)|lung(3)|breast(1)|skin(1)	9						ACCAACCGTTCCCACCTAACT	0.453													70	88	---	---	---	---					
EMG1	10436	broad.mit.edu	37	12	7080212	7080213	+	Splice_Site	INS	-	C	C	rs17857448		TCGA-FY-A3W9-01A-11D-A22D-08	TCGA-FY-A3W9-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	394b10da-aa66-49cb-8448-6c82165ae22a	c2b952ae-aee7-4ac2-a122-bea1eead79f5	g.chr12:7080212_7080213insC	uc001qsh.3	+	2	272	c.129_splice	c.e2+1	p.L43_splice	PHB2_uc001qsd.2_5'Flank|PHB2_uc010sft.1_5'Flank|PHB2_uc010sfu.1_5'Flank|EMG1_uc009zfo.2_RNA|EMG1_uc010sfv.1_RNA	NM_006331	NP_006322	Q92979	NEP1_HUMAN	ribosome biogenesis protein NEP1						ribosomal small subunit biogenesis	cytoplasm|nucleolus	rRNA (pseudouridine) methyltransferase activity|rRNA binding				0						GAGGCCGTAGTTTATTGTGGTG	0.569													7	22	---	---	---	---					
Unknown	0	broad.mit.edu	37	12	89774201	89774202	+	IGR	INS	-	CTC	CTC	rs141494011	by1000genomes	TCGA-FY-A3W9-01A-11D-A22D-08	TCGA-FY-A3W9-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	394b10da-aa66-49cb-8448-6c82165ae22a	c2b952ae-aee7-4ac2-a122-bea1eead79f5	g.chr12:89774201_89774202insCTC								DUSP6 (27905 upstream) : POC1B (39299 downstream)																							ccctcccccttctcctcctcct	0.198													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	46389316	46389316	+	IGR	DEL	A	-	-	rs60889334		TCGA-FY-A3W9-01A-11D-A22D-08	TCGA-FY-A3W9-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	394b10da-aa66-49cb-8448-6c82165ae22a	c2b952ae-aee7-4ac2-a122-bea1eead79f5	g.chr16:46389316delA								None (None upstream) : ANKRD26P1 (113933 downstream)																							ctattattccattagattcca	0.000													8	102	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	46390181	46390182	+	IGR	INS	-	T	T	rs71222395		TCGA-FY-A3W9-01A-11D-A22D-08	TCGA-FY-A3W9-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	394b10da-aa66-49cb-8448-6c82165ae22a	c2b952ae-aee7-4ac2-a122-bea1eead79f5	g.chr16:46390181_46390182insT								None (None upstream) : ANKRD26P1 (113067 downstream)																							catgatgatactatttgagccc	0.000													7	180	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	46390749	46390749	+	IGR	DEL	A	-	-	rs4404095		TCGA-FY-A3W9-01A-11D-A22D-08	TCGA-FY-A3W9-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	394b10da-aa66-49cb-8448-6c82165ae22a	c2b952ae-aee7-4ac2-a122-bea1eead79f5	g.chr16:46390749delA								None (None upstream) : ANKRD26P1 (112500 downstream)																							tggtgattccactggatttct	0.000													7	119	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	46403697	46403698	+	IGR	INS	-	G	G	rs142975115		TCGA-FY-A3W9-01A-11D-A22D-08	TCGA-FY-A3W9-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	394b10da-aa66-49cb-8448-6c82165ae22a	c2b952ae-aee7-4ac2-a122-bea1eead79f5	g.chr16:46403697_46403698insG								None (None upstream) : ANKRD26P1 (99551 downstream)																							tttcattcgatgatgattccat	0.000													9	1306	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	46405916	46405916	+	IGR	DEL	T	-	-	rs77422485		TCGA-FY-A3W9-01A-11D-A22D-08	TCGA-FY-A3W9-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	394b10da-aa66-49cb-8448-6c82165ae22a	c2b952ae-aee7-4ac2-a122-bea1eead79f5	g.chr16:46405916delT								None (None upstream) : ANKRD26P1 (97333 downstream)																							ctttcaatcattCCCTTTGAT	0.050													8	549	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	21549913	21549914	+	IGR	DEL	CT	-	-	rs112001794		TCGA-FY-A3W9-01A-11D-A22D-08	TCGA-FY-A3W9-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	394b10da-aa66-49cb-8448-6c82165ae22a	c2b952ae-aee7-4ac2-a122-bea1eead79f5	g.chr17:21549913_21549914delCT								C17orf51 (72182 upstream) : FAM27L (275456 downstream)																							TCAATGAAACCTTCTGTGGCAG	0.515													3	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	22253249	22253249	+	IGR	DEL	C	-	-	rs140540869		TCGA-FY-A3W9-01A-11D-A22D-08	TCGA-FY-A3W9-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	394b10da-aa66-49cb-8448-6c82165ae22a	c2b952ae-aee7-4ac2-a122-bea1eead79f5	g.chr17:22253249delC								FLJ36000 (340179 upstream) : None (None downstream)																							ttgaacctttctttgatagtt	0.000													15	1145	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	44337987	44337989	+	IGR	DEL	TTT	-	-			TCGA-FY-A3W9-01A-11D-A22D-08	TCGA-FY-A3W9-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	394b10da-aa66-49cb-8448-6c82165ae22a	c2b952ae-aee7-4ac2-a122-bea1eead79f5	g.chr17:44337987_44337989delTTT								KIAA1267 (35270 upstream) : ARL17B (25874 downstream)																							CTCTAttctcttttttttttttt	0.296													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	18	18515832	18515832	+	IGR	DEL	G	-	-	rs111711714		TCGA-FY-A3W9-01A-11D-A22D-08	TCGA-FY-A3W9-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	394b10da-aa66-49cb-8448-6c82165ae22a	c2b952ae-aee7-4ac2-a122-bea1eead79f5	g.chr18:18515832delG								None (None upstream) : ROCK1 (13873 downstream)																							cggtgcaaaaggaaatatctt	0.000													10	55	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	27732326	27732329	+	IGR	DEL	TGTT	-	-	rs74211006		TCGA-FY-A3W9-01A-11D-A22D-08	TCGA-FY-A3W9-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	394b10da-aa66-49cb-8448-6c82165ae22a	c2b952ae-aee7-4ac2-a122-bea1eead79f5	g.chr19:27732326_27732329delTGTT								None (None upstream) : LOC148189 (549073 downstream)																							ggaaacactctgtttgtaaaatct	0.000													14	301	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	36913800	36913800	+	IGR	DEL	A	-	-			TCGA-FY-A3W9-01A-11D-A22D-08	TCGA-FY-A3W9-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	394b10da-aa66-49cb-8448-6c82165ae22a	c2b952ae-aee7-4ac2-a122-bea1eead79f5	g.chr19:36913800delA								ZFP82 (4250 upstream) : ZNF566 (22222 downstream)																							CTTTGTCATTAAAAAAAAAAA	0.194													3	6	---	---	---	---					
DBP	1628	broad.mit.edu	37	19	49139149	49139149	+	Frame_Shift_Del	DEL	C	-	-			TCGA-FY-A3W9-01A-11D-A22D-08	TCGA-FY-A3W9-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	394b10da-aa66-49cb-8448-6c82165ae22a	c2b952ae-aee7-4ac2-a122-bea1eead79f5	g.chr19:49139149delC	uc002pjx.3	-	2	626	c.238delG	c.(238-240)GCAfs	p.A80fs	SEC1_uc010xzv.1_5'Flank|SEC1_uc002pka.2_5'Flank|SEC1_uc010xzw.1_5'Flank|SEC1_uc010ema.2_5'Flank|DBP_uc002pjy.2_Frame_Shift_Del_p.A80fs|DBP_uc010elz.1_Frame_Shift_Del_p.A80fs	NM_001352	NP_001343	Q10586	DBP_HUMAN	D site of albumin promoter (albumin D-box)	80					regulation of transcription from RNA polymerase II promoter|rhythmic process	nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0		all_lung(116;0.000125)|Lung NSC(112;0.000202)|all_epithelial(76;0.000283)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;9.98e-05)|all cancers(93;0.000112)|GBM - Glioblastoma multiforme(486;0.00615)|Epithelial(262;0.0155)		CCCACCACTGCCCCAGCCGGG	0.582													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	92319926	92319926	+	IGR	DEL	T	-	-			TCGA-FY-A3W9-01A-11D-A22D-08	TCGA-FY-A3W9-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	394b10da-aa66-49cb-8448-6c82165ae22a	c2b952ae-aee7-4ac2-a122-bea1eead79f5	g.chr2:92319926delT								FKSG73 (189432 upstream) : None (None downstream)																							gagttgaacctttcttttgag	0.000													10	42	---	---	---	---					
Unknown	0	broad.mit.edu	37	21	14898958	14898959	+	IGR	INS	-	A	A			TCGA-FY-A3W9-01A-11D-A22D-08	TCGA-FY-A3W9-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	394b10da-aa66-49cb-8448-6c82165ae22a	c2b952ae-aee7-4ac2-a122-bea1eead79f5	g.chr21:14898958_14898959insA								C21orf99 (408389 upstream) : POTED (83539 downstream)																							TGGAATGTCTGAAAAAAAAAAA	0.485													4	9	---	---	---	---					
Unknown	0	broad.mit.edu	37	22	20150736	20150738	+	IGR	DEL	CAC	-	-			TCGA-FY-A3W9-01A-11D-A22D-08	TCGA-FY-A3W9-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	394b10da-aa66-49cb-8448-6c82165ae22a	c2b952ae-aee7-4ac2-a122-bea1eead79f5	g.chr22:20150736_20150738delCAC								ZDHHC8 (15207 upstream) : LOC150197 (43117 downstream)																							ctaccaccatcaccaccaccacc	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	3	114998012	114998012	+	IGR	DEL	G	-	-			TCGA-FY-A3W9-01A-11D-A22D-08	TCGA-FY-A3W9-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	394b10da-aa66-49cb-8448-6c82165ae22a	c2b952ae-aee7-4ac2-a122-bea1eead79f5	g.chr3:114998012delG								ZBTB20 (131885 upstream) : GAP43 (344139 downstream)																							GACAACAATAGGGACCATGAT	0.403													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	49120948	49120948	+	IGR	DEL	C	-	-			TCGA-FY-A3W9-01A-11D-A22D-08	TCGA-FY-A3W9-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	394b10da-aa66-49cb-8448-6c82165ae22a	c2b952ae-aee7-4ac2-a122-bea1eead79f5	g.chr4:49120948delC								CWH43 (56855 upstream) : None (None downstream)																							ccattccattccagttgattc	0.000													7	128	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	49121582	49121582	+	IGR	DEL	C	-	-			TCGA-FY-A3W9-01A-11D-A22D-08	TCGA-FY-A3W9-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	394b10da-aa66-49cb-8448-6c82165ae22a	c2b952ae-aee7-4ac2-a122-bea1eead79f5	g.chr4:49121582delC								CWH43 (57489 upstream) : None (None downstream)																							gcattccattccattccactc	0.000													11	98	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	12165337	12165337	+	IGR	DEL	T	-	-			TCGA-FY-A3W9-01A-11D-A22D-08	TCGA-FY-A3W9-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	394b10da-aa66-49cb-8448-6c82165ae22a	c2b952ae-aee7-4ac2-a122-bea1eead79f5	g.chr6:12165337delT								HIVEP1 (106 upstream) : EDN1 (125192 downstream)																							CAACCCTTCATTTTTTTTATA	0.378													7	405	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	58778954	58778954	+	IGR	DEL	C	-	-	rs67064770		TCGA-FY-A3W9-01A-11D-A22D-08	TCGA-FY-A3W9-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	394b10da-aa66-49cb-8448-6c82165ae22a	c2b952ae-aee7-4ac2-a122-bea1eead79f5	g.chr6:58778954delC								GUSBL2 (491230 upstream) : None (None downstream)																							aacgggatttcttcgtataaa	0.000													12	448	---	---	---	---					
MYO6	4646	broad.mit.edu	37	6	76599857	76599858	+	Frame_Shift_Ins	INS	-	A	A			TCGA-FY-A3W9-01A-11D-A22D-08	TCGA-FY-A3W9-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	394b10da-aa66-49cb-8448-6c82165ae22a	c2b952ae-aee7-4ac2-a122-bea1eead79f5	g.chr6:76599857_76599858insA	uc003pih.1	+	26	3021_3022	c.2742_2743insA	c.(2740-2745)CAGAAAfs	p.Q914fs	MYO6_uc003pig.1_Frame_Shift_Ins_p.Q914fs|MYO6_uc003pii.1_Frame_Shift_Ins_p.Q914fs	NM_004999	NP_004990	Q9UM54	MYO6_HUMAN	myosin VI	914_915	Potential.				actin filament-based movement|DNA damage response, signal transduction by p53 class mediator|endocytosis|intracellular protein transport|positive regulation of transcription from RNA polymerase II promoter|regulation of secretion|sensory perception of sound|synaptic transmission	cell cortex|clathrin coated vesicle membrane|coated pit|cytosol|DNA-directed RNA polymerase II, holoenzyme|filamentous actin|Golgi apparatus|nuclear membrane|perinuclear region of cytoplasm|ruffle membrane|unconventional myosin complex	actin filament binding|ADP binding|ATP binding|calmodulin binding|minus-end directed microfilament motor activity|protein binding			kidney(1)|pancreas(1)	2		all_hematologic(105;0.189)		BRCA - Breast invasive adenocarcinoma(397;0.223)		GTGCATTACAGAAAAAAAAACA	0.381													7	76	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	61968843	61968843	+	IGR	DEL	A	-	-	rs10156099		TCGA-FY-A3W9-01A-11D-A22D-08	TCGA-FY-A3W9-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	394b10da-aa66-49cb-8448-6c82165ae22a	c2b952ae-aee7-4ac2-a122-bea1eead79f5	g.chr7:61968843delA								None (None upstream) : LOC643955 (782829 downstream)																							atcttcaaataaaaaccagac	0.000													7	1049	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	61970367	61970367	+	IGR	DEL	C	-	-	rs4718027		TCGA-FY-A3W9-01A-11D-A22D-08	TCGA-FY-A3W9-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	394b10da-aa66-49cb-8448-6c82165ae22a	c2b952ae-aee7-4ac2-a122-bea1eead79f5	g.chr7:61970367delC								None (None upstream) : LOC643955 (781305 downstream)																							aacgggatttcttcattgaat	0.000													12	1434	---	---	---	---					
ADCK5	203054	broad.mit.edu	37	8	145617535	145617549	+	Splice_Site	DEL	GGGGGTGCAAGGTGA	-	-	rs11270020		TCGA-FY-A3W9-01A-11D-A22D-08	TCGA-FY-A3W9-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	394b10da-aa66-49cb-8448-6c82165ae22a	c2b952ae-aee7-4ac2-a122-bea1eead79f5	g.chr8:145617535_145617549delGGGGGTGCAAGGTGA	uc003zch.2	+	12	1321	c.1267_splice	c.e12+1	p.D423_splice	ADCK5_uc003zcg.2_Intron|ADCK5_uc003zci.2_Splice_Site_p.D12_splice	NM_174922	NP_777582	Q3MIX3	ADCK5_HUMAN	aarF domain containing kinase 5							integral to membrane	protein serine/threonine kinase activity			stomach(1)	1	all_cancers(97;6.64e-12)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;8.96e-41)|Epithelial(56;4.08e-40)|all cancers(56;4.51e-35)|BRCA - Breast invasive adenocarcinoma(115;0.0323)|Colorectal(110;0.055)			CAGCCGCACTGGGGGTGCAAGGTGAGGGGGTGCAA	0.660													3	4	---	---	---	---					
TUSC1	286319	broad.mit.edu	37	9	25678177	25678178	+	In_Frame_Ins	INS	-	CGC	CGC			TCGA-FY-A3W9-01A-11D-A22D-08	TCGA-FY-A3W9-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	394b10da-aa66-49cb-8448-6c82165ae22a	c2b952ae-aee7-4ac2-a122-bea1eead79f5	g.chr9:25678177_25678178insCGC	uc003zpx.2	-	1	679_680	c.142_143insGCG	c.(142-144)GTG>GGCGTG	p.47_48insG		NM_001004125	NP_001004125	Q2TAM9	TUSC1_HUMAN	tumor suppressor candidate 1	47_48	Gly-rich.										0	all_hematologic(1;0.197)	all_neural(3;5.42e-18)|Glioma(3;5.54e-17)		GBM - Glioblastoma multiforme(1;1.51e-108)|Lung(42;2.88e-14)|LUSC - Lung squamous cell carcinoma(38;3.16e-11)		tcgccagcccacgccgccgccg	0.525													3	5	---	---	---	---					
EDF1	8721	broad.mit.edu	37	9	139760831	139760831	+	5'Flank	DEL	G	-	-	rs111812525		TCGA-FY-A3W9-01A-11D-A22D-08	TCGA-FY-A3W9-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	394b10da-aa66-49cb-8448-6c82165ae22a	c2b952ae-aee7-4ac2-a122-bea1eead79f5	g.chr9:139760831delG	uc004cjt.1	-						EDF1_uc004cju.1_5'Flank	NM_003792	NP_003783	O60869	EDF1_HUMAN	endothelial differentiation-related factor 1						endothelial cell differentiation|multicellular organismal development|positive regulation of DNA binding|positive regulation of transcription, DNA-dependent|regulation of lipid metabolic process|transcription, DNA-dependent	cytoplasm|cytoplasm|nucleolus|nucleus	calmodulin binding|protein binding|protein binding|sequence-specific DNA binding|transcription coactivator activity				0	all_cancers(76;0.0841)|all_epithelial(76;0.217)	Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;1.52e-05)|Epithelial(140;0.000171)		GGCTGCACGCGGGGGGCGGGC	0.746													6	0	---	---	---	---					
Unknown	0	broad.mit.edu	37	Y	13842691	13842691	+	IGR	DEL	T	-	-			TCGA-FY-A3W9-01A-11D-A22D-08	TCGA-FY-A3W9-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	394b10da-aa66-49cb-8448-6c82165ae22a	c2b952ae-aee7-4ac2-a122-bea1eead79f5	g.chrY:13842691delT								None (None upstream) : TTTY15 (931607 downstream)																							tggaatggaatggaatggaat	0.000													8	2443	---	---	---	---					
