Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
CROCCL1	84809	broad.mit.edu	37	1	16946407	16946407	+	RNA	SNP	T	G	G	rs10796418	by1000genomes	TCGA-FY-A3WA-01A-11D-A22D-08	TCGA-FY-A3WA-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d6c94a2f-7b2f-4067-9d0b-7606c893f9e9	2184c4d7-dcda-4c5d-ae4e-ee823a887d79	g.chr1:16946407T>G	uc010ocf.1	-	3		c.491A>C			CROCCL1_uc009vov.1_RNA|CROCCL1_uc001aze.2_RNA|CROCCL1_uc001azf.2_RNA					Homo sapiens mRNA for FLJ00313 protein.												0						AGCAATCTCCTCACTCAGCTG	0.672000													3	31	---	---	---	---	0	0	0.009096	0	0
LYZL2	119180	broad.mit.edu	37	10	30915131	30915131	+	Silent	SNP	G	A	A			TCGA-FY-A3WA-01A-11D-A22D-08	TCGA-FY-A3WA-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d6c94a2f-7b2f-4067-9d0b-7606c893f9e9	2184c4d7-dcda-4c5d-ae4e-ee823a887d79	g.chr10:30915131G>A	uc001ivk.2	-	3	352	c.339C>T	c.(337-339)GAC>GAT	p.D113D		NM_183058	NP_898881	Q7Z4W2	LYZL2_HUMAN	lysozyme-like 2	67					cell wall macromolecule catabolic process	extracellular region	lysozyme activity				0		Prostate(175;0.151)				CGATGCTGCCGTCATCCAGGA	0.587000													24	53	---	---	---	---	0	0	0.003954	0	0
GPR83	10888	broad.mit.edu	37	11	94129622	94129622	+	Silent	SNP	G	A	A			TCGA-FY-A3WA-01A-11D-A22D-08	TCGA-FY-A3WA-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d6c94a2f-7b2f-4067-9d0b-7606c893f9e9	2184c4d7-dcda-4c5d-ae4e-ee823a887d79	g.chr11:94129622G>A	uc001pet.2	-	2	628	c.456C>T	c.(454-456)TAC>TAT	p.Y152Y		NM_016540	NP_057624	Q9NYM4	GPR83_HUMAN	G protein-coupled receptor 83 precursor	152	Helical; Name=3; (Potential).					integral to membrane|plasma membrane	neuropeptide Y receptor activity			central_nervous_system(2)|ovary(1)	3		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.0123)				GCAGTGAGCAGTACTGGGCAA	0.552000													3	117	---	---	---	---	0	0	0.000602	0	0
CCNT1	904	broad.mit.edu	37	12	49087277	49087277	+	Missense_Mutation	SNP	T	C	C			TCGA-FY-A3WA-01A-11D-A22D-08	TCGA-FY-A3WA-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d6c94a2f-7b2f-4067-9d0b-7606c893f9e9	2184c4d7-dcda-4c5d-ae4e-ee823a887d79	g.chr12:49087277T>C	uc001rse.1	-	9	2043	c.1720A>G	c.(1720-1722)AGG>GGG	p.R574G	LOC144438_uc001rsd.3_5'Flank|CCNT1_uc009zkz.1_Missense_Mutation_p.R289G	NM_001240	NP_001231	O60563	CCNT1_HUMAN	cyclin T1	574	Ser-rich.				cell cycle|cell division|interspecies interaction between organisms|positive regulation of viral transcription|protein phosphorylation|regulation of cyclin-dependent protein kinase activity|regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|viral reproduction	nucleoplasm	DNA binding|protein kinase binding			ovary(3)|lung(1)|breast(1)|skin(1)	6						GAGGGTCCCCTTTTACGAGTA	0.443000													3	141	---	---	---	---	0	0	0.004672	0	0
ADAM6	8755	broad.mit.edu	37	14	106236827	106236827	+	RNA	SNP	G	T	T			TCGA-FY-A3WA-01A-11D-A22D-08	TCGA-FY-A3WA-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d6c94a2f-7b2f-4067-9d0b-7606c893f9e9	2184c4d7-dcda-4c5d-ae4e-ee823a887d79	g.chr14:106236827G>T	uc010tyt.1	-	3613		c.57521C>A			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Intron|uc001ysf.2_Intron|uc001ysh.1_RNA|uc001ysi.1_RNA					Parts of antibodies, mostly variable regions.												0						CCTGGGCACCGTGGGCACGGG	0.637000													4	195	---	---	---	---	0.000602214	0.000635671	0.000602	1	0
Unknown	0	broad.mit.edu	37	15	28948349	28948349	+	5'Flank	SNP	T	C	C			TCGA-FY-A3WA-01A-11D-A22D-08	TCGA-FY-A3WA-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d6c94a2f-7b2f-4067-9d0b-7606c893f9e9	2184c4d7-dcda-4c5d-ae4e-ee823a887d79	g.chr15:28948349T>C	uc001zcd.2	+											DQ593033																		CCACTGGCTCTCAGAAGGGGT	0.567000													2	12	---	---	---	---	0	0	0.004672	0	0
RAD51	5888	broad.mit.edu	37	15	41022057	41022057	+	Missense_Mutation	SNP	G	A	A			TCGA-FY-A3WA-01A-11D-A22D-08	TCGA-FY-A3WA-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d6c94a2f-7b2f-4067-9d0b-7606c893f9e9	2184c4d7-dcda-4c5d-ae4e-ee823a887d79	g.chr15:41022057G>A	uc001zmi.3	+	9	1080	c.781G>A	c.(781-783)GTA>ATA	p.V261I	RAD51_uc010bbw.2_Intron|RAD51_uc010bbx.2_Missense_Mutation_p.V262I|RAD51_uc001zmk.3_RNA|RAD51_uc001zml.3_Missense_Mutation_p.V262I	NM_002875	NP_002866	Q06609	RAD51_HUMAN	RAD51 homolog protein isoform 1	261					DNA recombinase assembly|DNA unwinding involved in replication|mitotic recombination|positive regulation of DNA ligation|protein homooligomerization|reciprocal meiotic recombination	mitochondrial matrix|nucleus|perinuclear region of cytoplasm|PML body	ATP binding|damaged DNA binding|double-stranded DNA binding|identical protein binding|protein C-terminus binding|single-stranded DNA binding|single-stranded DNA-dependent ATPase activity				0		all_cancers(109;1.19e-18)|all_epithelial(112;2.33e-15)|Lung NSC(122;5.34e-11)|all_lung(180;1.33e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.0946)		GBM - Glioblastoma multiforme(113;1.45e-05)|BRCA - Breast invasive adenocarcinoma(123;0.000421)|COAD - Colon adenocarcinoma(120;0.163)		TCAGTTTGGTGTAGCAGTGGT	0.443000								Homologous_recombination					3	93	---	---	---	---	0	0	0.009096	0	0
LOC645752	645752	broad.mit.edu	37	15	78207569	78207569	+	Missense_Mutation	SNP	G	A	A	rs56314252	by1000genomes	TCGA-FY-A3WA-01A-11D-A22D-08	TCGA-FY-A3WA-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d6c94a2f-7b2f-4067-9d0b-7606c893f9e9	2184c4d7-dcda-4c5d-ae4e-ee823a887d79	g.chr15:78207569G>A	uc010bky.2	-	18	2107	c.1343C>T	c.(1342-1344)GCA>GTA	p.A448V	LOC645752_uc010umq.1_Missense_Mutation_p.A95V|uc002bcw.1_5'Flank|uc002bcx.1_5'Flank	NR_027024				SubName: Full=GOLGA6 protein; Flags: Fragment;												0						GATCTGCTGTGCAGTGGGGTT	0.572000													5	52	---	---	---	---	0	0	0.001984	0	0
KRT32	3882	broad.mit.edu	37	17	39623409	39623409	+	Missense_Mutation	SNP	G	A	A	rs141134486	byFrequency	TCGA-FY-A3WA-01A-11D-A22D-08	TCGA-FY-A3WA-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d6c94a2f-7b2f-4067-9d0b-7606c893f9e9	2184c4d7-dcda-4c5d-ae4e-ee823a887d79	g.chr17:39623409G>A	uc002hwr.2	-	1	230	c.169C>T	c.(169-171)CGG>TGG	p.R57W		NM_002278	NP_002269	Q14532	K1H2_HUMAN	keratin 32	57	Head.				epidermis development	intermediate filament	protein binding|structural molecule activity				0		Breast(137;0.000812)				CTGGCTGGCCGGAAGGTGGTG	0.652000													3	95	---	---	---	---	0	0	0.004672	0	0
POTEC	388468	broad.mit.edu	37	18	14543133	14543133	+	Missense_Mutation	SNP	C	A	A			TCGA-FY-A3WA-01A-11D-A22D-08	TCGA-FY-A3WA-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d6c94a2f-7b2f-4067-9d0b-7606c893f9e9	2184c4d7-dcda-4c5d-ae4e-ee823a887d79	g.chr18:14543133C>A	uc010dln.2	-	1	467	c.13G>T	c.(13-15)GTT>TTT	p.V5F	POTEC_uc010xaj.1_RNA	NM_001137671	NP_001131143	B2RU33	POTEC_HUMAN	ANKRD26-like family B, member 2	5										skin(3)	3						ATTGAACAAACCTCAGTCACC	0.552000													31	52	---	---	---	---	1.465e-08	1.63736e-08	0.008740	1	0
PIAS2	9063	broad.mit.edu	37	18	44470887	44470887	+	Missense_Mutation	SNP	G	A	A			TCGA-FY-A3WA-01A-11D-A22D-08	TCGA-FY-A3WA-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d6c94a2f-7b2f-4067-9d0b-7606c893f9e9	2184c4d7-dcda-4c5d-ae4e-ee823a887d79	g.chr18:44470887G>A	uc002lck.2	-	2	313	c.155C>T	c.(154-156)GCG>GTG	p.A52V	PIAS2_uc010dnp.2_5'UTR|PIAS2_uc002lcl.2_Missense_Mutation_p.A52V|PIAS2_uc010xda.1_Intron|PIAS2_uc002lcm.2_Missense_Mutation_p.A52V|PIAS2_uc002lcn.1_Missense_Mutation_p.A56V	NM_004671	NP_004662	O75928	PIAS2_HUMAN	protein inhibitor of activated STAT X isoform	52					androgen receptor signaling pathway|negative regulation of androgen receptor signaling pathway|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear speck|PML body	androgen receptor binding|DNA binding|protein binding|SUMO ligase activity|transcription coactivator activity|zinc ion binding			ovary(2)|breast(1)|skin(1)	4						AATCTGAACCGCAGGGCTGCA	0.448000													3	53	---	---	---	---	0	0	0.004672	0	0
SERPINB4	6318	broad.mit.edu	37	18	61309020	61309020	+	Missense_Mutation	SNP	C	T	T			TCGA-FY-A3WA-01A-11D-A22D-08	TCGA-FY-A3WA-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d6c94a2f-7b2f-4067-9d0b-7606c893f9e9	2184c4d7-dcda-4c5d-ae4e-ee823a887d79	g.chr18:61309020C>T	uc002ljf.2	-	4	411	c.325G>A	c.(325-327)GGA>AGA	p.G109R	SERPINB4_uc002lje.2_Missense_Mutation_p.G109R|SERPINB4_uc002ljg.2_Intron	NM_002974	NP_002965	P48594	SPB4_HUMAN	serine (or cysteine) proteinase inhibitor, clade	109					immune response|regulation of proteolysis	cytoplasm|extracellular region	protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|lung(1)	3						GTCTTTTCTCCGAAGAGCTTG	0.413000													74	116	---	---	---	---	0	0	0.014410	0	0
SERPINB4	6318	broad.mit.edu	37	18	61310686	61310686	+	Silent	SNP	G	A	A			TCGA-FY-A3WA-01A-11D-A22D-08	TCGA-FY-A3WA-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d6c94a2f-7b2f-4067-9d0b-7606c893f9e9	2184c4d7-dcda-4c5d-ae4e-ee823a887d79	g.chr18:61310686G>A	uc002ljf.2	-	2	212	c.126C>T	c.(124-126)CTC>CTT	p.L42L	SERPINB4_uc002lje.2_Silent_p.L42L|SERPINB4_uc002ljg.2_Intron	NM_002974	NP_002965	P48594	SPB4_HUMAN	serine (or cysteine) proteinase inhibitor, clade	42					immune response|regulation of proteolysis	cytoplasm|extracellular region	protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|lung(1)	3						TGGCTCCTAAGAGGACCATCC	0.433000													3	149	---	---	---	---	0	0	0.004672	0	0
MLLT1	4298	broad.mit.edu	37	19	6230647	6230647	+	Silent	SNP	G	A	A			TCGA-FY-A3WA-01A-11D-A22D-08	TCGA-FY-A3WA-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d6c94a2f-7b2f-4067-9d0b-7606c893f9e9	2184c4d7-dcda-4c5d-ae4e-ee823a887d79	g.chr19:6230647G>A	uc002mek.2	-	4	518	c.354C>T	c.(352-354)CGC>CGT	p.R118R		NM_005934	NP_005925	Q03111	ENL_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	118					regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|nucleolus	DNA binding|protein binding			skin(1)	1						GCTTCTCGCAGCGCAGGTGGT	0.632000			T	MLL	AL								3	97	---	---	---	---	0	0	0.004672	0	0
ZNF99	7652	broad.mit.edu	37	19	22941152	22941152	+	Missense_Mutation	SNP	T	C	C			TCGA-FY-A3WA-01A-11D-A22D-08	TCGA-FY-A3WA-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d6c94a2f-7b2f-4067-9d0b-7606c893f9e9	2184c4d7-dcda-4c5d-ae4e-ee823a887d79	g.chr19:22941152T>C	uc010xrh.1	-	5	1286	c.1286A>G	c.(1285-1287)CAT>CGT	p.H429R		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				GGCTGAGAAATGCTTAAAAGC	0.353000													5	39	---	---	---	---	0	0	0.000602	0	0
BCL2L12	83596	broad.mit.edu	37	19	50170383	50170383	+	Missense_Mutation	SNP	C	G	G			TCGA-FY-A3WA-01A-11D-A22D-08	TCGA-FY-A3WA-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d6c94a2f-7b2f-4067-9d0b-7606c893f9e9	2184c4d7-dcda-4c5d-ae4e-ee823a887d79	g.chr19:50170383C>G	uc002ppa.2	+	3	1149	c.467C>G	c.(466-468)TCT>TGT	p.S156C	IRF3_uc002pot.1_5'Flank|IRF3_uc010end.1_5'Flank|IRF3_uc002pox.1_5'Flank|IRF3_uc002poy.1_5'Flank|IRF3_uc002pou.2_5'Flank|IRF3_uc002pov.2_5'Flank|IRF3_uc002pow.2_5'Flank|IRF3_uc002poz.1_5'Flank|IRF3_uc010ene.1_5'Flank|BCL2L12_uc002ppb.2_Missense_Mutation_p.S155C	NM_138639	NP_619580	Q9HB09	B2L12_HUMAN	BCL2-like 12 isoform 1	156					apoptosis					central_nervous_system(1)	1		all_lung(116;3.24e-07)|Lung NSC(112;1.6e-06)|all_neural(266;0.0459)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.000681)|GBM - Glioblastoma multiforme(134;0.0214)		CGGCCTTGCTCTCTGCCCATC	0.567000													20	343	---	---	---	---	0	0	0.014323	0	0
ZNF8	7554	broad.mit.edu	37	19	58806382	58806382	+	Missense_Mutation	SNP	G	A	A			TCGA-FY-A3WA-01A-11D-A22D-08	TCGA-FY-A3WA-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d6c94a2f-7b2f-4067-9d0b-7606c893f9e9	2184c4d7-dcda-4c5d-ae4e-ee823a887d79	g.chr19:58806382G>A	uc002qry.1	+	4	1338	c.1208G>A	c.(1207-1209)GGG>GAG	p.G403E	ZNF8_uc002qrz.2_RNA	NM_021089	NP_066575	P17098	ZNF8_HUMAN	zinc finger protein 8	403	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		all_cancers(17;6.46e-05)|Lung NSC(17;0.0233)|all_neural(62;0.0381)|all_epithelial(17;0.0427)|all_lung(17;0.057)|Ovarian(87;0.17)|Colorectal(82;0.227)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.00619)		AACCACTGCGGGAAGGGCTTC	0.602000													3	129	---	---	---	---	0	0	0.004672	0	0
SPHKAP	80309	broad.mit.edu	37	2	228882979	228882979	+	Missense_Mutation	SNP	G	A	A	rs145565567		TCGA-FY-A3WA-01A-11D-A22D-08	TCGA-FY-A3WA-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d6c94a2f-7b2f-4067-9d0b-7606c893f9e9	2184c4d7-dcda-4c5d-ae4e-ee823a887d79	g.chr2:228882979G>A	uc002vpq.2	-	7	2638	c.2591C>T	c.(2590-2592)ACG>ATG	p.T864M	SPHKAP_uc002vpp.2_Missense_Mutation_p.T864M|SPHKAP_uc010zlx.1_Missense_Mutation_p.T864M	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	864						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		CTGGCTGACCGTTGGGGACCT	0.483000													4	157	---	---	---	---	0	0	0.009096	0	0
CLIC6	54102	broad.mit.edu	37	21	36088676	36088676	+	Missense_Mutation	SNP	A	G	G			TCGA-FY-A3WA-01A-11D-A22D-08	TCGA-FY-A3WA-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d6c94a2f-7b2f-4067-9d0b-7606c893f9e9	2184c4d7-dcda-4c5d-ae4e-ee823a887d79	g.chr21:36088676A>G	uc010gmt.1	+	7	2011	c.2011A>G	c.(2011-2013)AGA>GGA	p.R671G	CLIC6_uc002yuf.1_Missense_Mutation_p.R653G	NM_053277	NP_444507	Q96NY7	CLIC6_HUMAN	chloride intracellular channel 6	671	GST C-terminal.					chloride channel complex|cytoplasm|plasma membrane	voltage-gated chloride channel activity			ovary(1)|central_nervous_system(1)	2						TGGCATCTGGAGATACTTGAA	0.363000													6	93	---	---	---	---	0	0	0.001168	0	0
DNASE1L3	1776	broad.mit.edu	37	3	58196559	58196559	+	Silent	SNP	G	A	A			TCGA-FY-A3WA-01A-11D-A22D-08	TCGA-FY-A3WA-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d6c94a2f-7b2f-4067-9d0b-7606c893f9e9	2184c4d7-dcda-4c5d-ae4e-ee823a887d79	g.chr3:58196559G>A	uc003djo.1	-	1	172	c.75C>T	c.(73-75)TCC>TCT	p.S25S	DNASE1L3_uc011bfd.1_Silent_p.S25S|DNASE1L3_uc003djp.1_Silent_p.S25S|DNASE1L3_uc003djq.1_Silent_p.S25S	NM_004944	NP_004935	Q13609	DNSL3_HUMAN	deoxyribonuclease I-like 3 precursor	25					apoptosis|DNA catabolic process	nucleus	calcium ion binding|DNA binding|endodeoxyribonuclease activity, producing 5'-phosphomonoesters			breast(2)|large_intestine(1)	3				BRCA - Breast invasive adenocarcinoma(55;0.00021)|KIRC - Kidney renal clear cell carcinoma(284;0.0445)|Kidney(284;0.0556)|OV - Ovarian serous cystadenocarcinoma(275;0.202)		TGACGTTGAAGGAGCAGATCC	0.577000													4	166	---	---	---	---	0	0	0.000602	0	0
POLQ	10721	broad.mit.edu	37	3	121179063	121179063	+	Missense_Mutation	SNP	G	A	A			TCGA-FY-A3WA-01A-11D-A22D-08	TCGA-FY-A3WA-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d6c94a2f-7b2f-4067-9d0b-7606c893f9e9	2184c4d7-dcda-4c5d-ae4e-ee823a887d79	g.chr3:121179063G>A	uc003eee.3	-	25	7115	c.6986C>T	c.(6985-6987)GCT>GTT	p.A2329V	POLQ_uc003eed.2_Missense_Mutation_p.A1501V	NM_199420	NP_955452	O75417	DPOLQ_HUMAN	DNA polymerase theta	2329					DNA repair|DNA replication	nucleoplasm	ATP binding|ATP-dependent helicase activity|damaged DNA binding|DNA-directed DNA polymerase activity|single-stranded DNA-dependent ATPase activity			ovary(4)|breast(3)|lung(2)|upper_aerodigestive_tract(1)|skin(1)	11				GBM - Glioblastoma multiforme(114;0.0915)		AGAGTAGTCAGCAGCCAGTAT	0.393000								DNA_polymerases_(catalytic_subunits)					3	67	---	---	---	---	0	0	0.004672	0	0
TBC1D14	57533	broad.mit.edu	37	4	7032081	7032081	+	Missense_Mutation	SNP	C	T	T			TCGA-FY-A3WA-01A-11D-A22D-08	TCGA-FY-A3WA-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d6c94a2f-7b2f-4067-9d0b-7606c893f9e9	2184c4d7-dcda-4c5d-ae4e-ee823a887d79	g.chr4:7032081C>T	uc011bwg.1	+	14	2123	c.2044C>T	c.(2044-2046)CGG>TGG	p.R682W	TBC1D14_uc003gjs.3_Missense_Mutation_p.R682W|TBC1D14_uc010idh.2_Missense_Mutation_p.R402W|TBC1D14_uc011bwh.1_Missense_Mutation_p.R329W|TBC1D14_uc003gju.3_Missense_Mutation_p.R173W	NM_001113361	NP_001106832	Q9P2M4	TBC14_HUMAN	TBC1 domain family, member 14 isoform a	682						intracellular	Rab GTPase activator activity			ovary(1)|pancreas(1)	2						GAAAGACAGCCGGGAAATGGA	0.577000													29	58	---	---	---	---	0	0	0.008361	0	0
TRAF1	7185	broad.mit.edu	37	9	123673658	123673658	+	Missense_Mutation	SNP	C	A	A			TCGA-FY-A3WA-01A-11D-A22D-08	TCGA-FY-A3WA-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d6c94a2f-7b2f-4067-9d0b-7606c893f9e9	2184c4d7-dcda-4c5d-ae4e-ee823a887d79	g.chr9:123673658C>A	uc004bku.1	-	6	1411	c.839G>T	c.(838-840)TGC>TTC	p.C280F	TRAF1_uc011lyg.1_Missense_Mutation_p.C158F|TRAF1_uc010mvl.1_Missense_Mutation_p.C280F	NM_005658	NP_005649	Q13077	TRAF1_HUMAN	TNF receptor-associated factor 1	280	MATH.				apoptosis|positive regulation of NF-kappaB transcription factor activity|protein complex assembly|regulation of apoptosis|signal transduction	cytoplasm	protein binding|zinc ion binding			skin(2)|ovary(1)	3						CGACTCATGGCACCGCCTGGT	0.637000													3	37	---	---	---	---	0.004672	0.00479827	0.004672	1	0
Unknown	0	broad.mit.edu	37	1	4204653	4204654	+	IGR	INS	-	CAC	CAC			TCGA-FY-A3WA-01A-11D-A22D-08	TCGA-FY-A3WA-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d6c94a2f-7b2f-4067-9d0b-7606c893f9e9	2184c4d7-dcda-4c5d-ae4e-ee823a887d79	g.chr1:4204653_4204654insCAC								LOC100133612 (370776 upstream) : LOC284661 (267457 downstream)																							caccactaccacaccaccacca	0.035													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	1	143391935	143391936	+	IGR	INS	-	TG	TG			TCGA-FY-A3WA-01A-11D-A22D-08	TCGA-FY-A3WA-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d6c94a2f-7b2f-4067-9d0b-7606c893f9e9	2184c4d7-dcda-4c5d-ae4e-ee823a887d79	g.chr1:143391935_143391936insTG								None (None upstream) : LOC100286793 (255703 downstream)																							ATATATATATATAAAGAGATTG	0.252													2	4	---	---	---	---					
CYB5R1	51706	broad.mit.edu	37	1	202936479	202936479	+	5'Flank	DEL	C	-	-			TCGA-FY-A3WA-01A-11D-A22D-08	TCGA-FY-A3WA-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d6c94a2f-7b2f-4067-9d0b-7606c893f9e9	2184c4d7-dcda-4c5d-ae4e-ee823a887d79	g.chr1:202936479delC	uc001gyt.2	-						CYB5R1_uc010pqe.1_5'Flank	NM_016243	NP_057327	Q9UHQ9	NB5R1_HUMAN	cytochrome b5 reductase 1						sterol biosynthetic process	integral to membrane	cytochrome-b5 reductase activity			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(75;0.141)			cggggcctggcgggggggggg	0.045													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	1	208650030	208650030	+	IGR	DEL	C	-	-			TCGA-FY-A3WA-01A-11D-A22D-08	TCGA-FY-A3WA-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d6c94a2f-7b2f-4067-9d0b-7606c893f9e9	2184c4d7-dcda-4c5d-ae4e-ee823a887d79	g.chr1:208650030delC								PLXNA2 (232365 upstream) : LOC642587 (952138 downstream)																							CCTTTCCGCTCAGATCAGGCA	0.483													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	38742888	38742888	+	IGR	DEL	C	-	-			TCGA-FY-A3WA-01A-11D-A22D-08	TCGA-FY-A3WA-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d6c94a2f-7b2f-4067-9d0b-7606c893f9e9	2184c4d7-dcda-4c5d-ae4e-ee823a887d79	g.chr10:38742888delC								LOC399744 (1808 upstream) : None (None downstream)																							TCAGGATCTGCCCCCCGGGTG	0.617													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	132587319	132587319	+	IGR	DEL	A	-	-	rs11363055		TCGA-FY-A3WA-01A-11D-A22D-08	TCGA-FY-A3WA-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d6c94a2f-7b2f-4067-9d0b-7606c893f9e9	2184c4d7-dcda-4c5d-ae4e-ee823a887d79	g.chr10:132587319delA								GLRX3 (604535 upstream) : TCERG1L (303337 downstream)																							ggggagcaggaggagcagggg	0.000													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	15	84858138	84858139	+	IGR	INS	-	T	T	rs71453232		TCGA-FY-A3WA-01A-11D-A22D-08	TCGA-FY-A3WA-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d6c94a2f-7b2f-4067-9d0b-7606c893f9e9	2184c4d7-dcda-4c5d-ae4e-ee823a887d79	g.chr15:84858138_84858139insT								ADAMTSL3 (149547 upstream) : LOC388152 (9461 downstream)																							TGGGGAGCTGGTGCAGAGGCCT	0.599													4	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	33967110	33967110	+	IGR	DEL	A	-	-			TCGA-FY-A3WA-01A-11D-A22D-08	TCGA-FY-A3WA-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d6c94a2f-7b2f-4067-9d0b-7606c893f9e9	2184c4d7-dcda-4c5d-ae4e-ee823a887d79	g.chr16:33967110delA								MIR1826 (1518 upstream) : UBE2MP1 (436692 downstream)																							AATGAATGTTAAAGACTATTT	0.234													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	25268526	25268529	+	IGR	DEL	TGAG	-	-			TCGA-FY-A3WA-01A-11D-A22D-08	TCGA-FY-A3WA-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d6c94a2f-7b2f-4067-9d0b-7606c893f9e9	2184c4d7-dcda-4c5d-ae4e-ee823a887d79	g.chr17:25268526_25268529delTGAG								None (None upstream) : WSB1 (352577 downstream)																							ACCAGTCAACTGAGTAATTCACTG	0.382													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	64603265	64603266	+	IGR	INS	-	C	C			TCGA-FY-A3WA-01A-11D-A22D-08	TCGA-FY-A3WA-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d6c94a2f-7b2f-4067-9d0b-7606c893f9e9	2184c4d7-dcda-4c5d-ae4e-ee823a887d79	g.chr2:64603265_64603266insC								PELI1 (231660 upstream) : HSPC159 (78061 downstream)																							atcaccaccataccactaccac	0.000													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	132768083	132768084	+	IGR	INS	-	G	G	rs111469343	by1000genomes	TCGA-FY-A3WA-01A-11D-A22D-08	TCGA-FY-A3WA-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d6c94a2f-7b2f-4067-9d0b-7606c893f9e9	2184c4d7-dcda-4c5d-ae4e-ee823a887d79	g.chr2:132768083_132768084insG								C2orf27B (208849 upstream) : NCRNA00164 (137080 downstream)																							TCTTGATGTTAACTATcagctg	0.218													5	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	133018715	133018715	+	IGR	DEL	T	-	-	rs66735050		TCGA-FY-A3WA-01A-11D-A22D-08	TCGA-FY-A3WA-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d6c94a2f-7b2f-4067-9d0b-7606c893f9e9	2184c4d7-dcda-4c5d-ae4e-ee823a887d79	g.chr2:133018715delT								NCRNA00164 (3173 upstream) : GPR39 (155432 downstream)																							GGCGGGGTGGTGGGGGGTGCC	0.532													6	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	20	26231887	26231887	+	IGR	DEL	G	-	-			TCGA-FY-A3WA-01A-11D-A22D-08	TCGA-FY-A3WA-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d6c94a2f-7b2f-4067-9d0b-7606c893f9e9	2184c4d7-dcda-4c5d-ae4e-ee823a887d79	g.chr20:26231887delG								MIR663 (42973 upstream) : None (None downstream)																							gcacgactttggggggactca	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	21	10718817	10718818	+	IGR	INS	-	A	A	rs145308056		TCGA-FY-A3WA-01A-11D-A22D-08	TCGA-FY-A3WA-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d6c94a2f-7b2f-4067-9d0b-7606c893f9e9	2184c4d7-dcda-4c5d-ae4e-ee823a887d79	g.chr21:10718817_10718818insA								None (None upstream) : TPTE (187925 downstream)																							gtctagtttttttgtgagaata	0.000													4	2	---	---	---	---					
Unknown	0	broad.mit.edu	37	21	44756755	44756755	+	IGR	DEL	A	-	-			TCGA-FY-A3WA-01A-11D-A22D-08	TCGA-FY-A3WA-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d6c94a2f-7b2f-4067-9d0b-7606c893f9e9	2184c4d7-dcda-4c5d-ae4e-ee823a887d79	g.chr21:44756755delA								CRYAA (163842 upstream) : SIK1 (77643 downstream)																							caccatcaccaccaccatcac	0.000													5	8	---	---	---	---					
Unknown	0	broad.mit.edu	37	22	16909977	16909981	+	IGR	DEL	CAAAA	-	-	rs111736616		TCGA-FY-A3WA-01A-11D-A22D-08	TCGA-FY-A3WA-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d6c94a2f-7b2f-4067-9d0b-7606c893f9e9	2184c4d7-dcda-4c5d-ae4e-ee823a887d79	g.chr22:16909977_16909981delCAAAA								OR11H1 (460173 upstream) : CCT8L2 (161667 downstream)																							ATGGCTCTGTCAAAATAAACAAAAT	0.322													3	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	5	120952552	120952552	+	IGR	DEL	A	-	-			TCGA-FY-A3WA-01A-11D-A22D-08	TCGA-FY-A3WA-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d6c94a2f-7b2f-4067-9d0b-7606c893f9e9	2184c4d7-dcda-4c5d-ae4e-ee823a887d79	g.chr5:120952552delA								PRR16 (929590 upstream) : FTMT (235098 downstream)																							GGATACTGACAAAAAAAAAAG	0.299													2	4	---	---	---	---					
UBXN8	7993	broad.mit.edu	37	8	30601611	30601611	+	5'Flank	DEL	C	-	-	rs3217273		TCGA-FY-A3WA-01A-11D-A22D-08	TCGA-FY-A3WA-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	d6c94a2f-7b2f-4067-9d0b-7606c893f9e9	2184c4d7-dcda-4c5d-ae4e-ee823a887d79	g.chr8:30601611delC	uc003xii.2	+						UBXN8_uc010lvi.2_5'Flank|UBXN8_uc011lbb.1_5'Flank	NM_005671	NP_005662	O00124	UBXN8_HUMAN	reproduction 8						single fertilization						0						TTGACCCTCTCCCAGCCGGCC	0.587													3	3	---	---	---	---					
