Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
MST1P2	11209	broad.mit.edu	37	1	16974592	16974592	+	RNA	SNP	C	T	T	rs150466841	by1000genomes	TCGA-H2-A2K9-01A-11D-A17V-08	TCGA-H2-A2K9-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	40507884-f752-4b6f-897d-3596bbba94cd	c000393d-a685-4e79-94bc-87176343d388	g.chr1:16974592C>T	uc010och.1	+	7		c.1052C>T			MST1P2_uc001azk.2_RNA|MST1P2_uc001azl.3_RNA|MST1P2_uc009vox.2_RNA|MST1P2_uc001azm.3_RNA	NR_027504				Homo sapiens cDNA FLJ43241 fis, clone HEART1000010, weakly  similar to Hepatocyte growth factor-like protein precursor.												0						TGCCGGAACCCCGACGGCTCA	0.667000													5	34	---	---	---	---	0	0	0.000602	0	0
NRAS	4893	broad.mit.edu	37	1	115256529	115256529	+	Missense_Mutation	SNP	T	C	C	rs11554290		TCGA-H2-A2K9-01A-11D-A17V-08	TCGA-H2-A2K9-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	40507884-f752-4b6f-897d-3596bbba94cd	c000393d-a685-4e79-94bc-87176343d388	g.chr1:115256529T>C	uc009wgu.2	-	3	436	c.182A>G	c.(181-183)CAA>CGA	p.Q61R		NM_002524	NP_002515	P01111	RASN_HUMAN	neuroblastoma RAS viral (v-ras) oncogene homolog	61	GTP.		Q -> K (in neuroblastoma cell).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	Golgi membrane|plasma membrane	GTP binding|GTPase activity	p.Q61R(757)|p.Q61K(537)|p.Q61L(147)|p.Q61H(95)|p.Q61P(21)|p.Q61E(9)|p.Q61?(4)|p.Q61Q(3)|p.Q61_E62>HK(1)		haematopoietic_and_lymphoid_tissue(1008)|skin(956)|thyroid(334)|large_intestine(62)|NS(60)|soft_tissue(32)|lung(31)|upper_aerodigestive_tract(25)|urinary_tract(12)|liver(10)|adrenal_gland(9)|autonomic_ganglia(8)|testis(8)|central_nervous_system(8)|prostate(8)|breast(7)|biliary_tract(6)|ovary(6)|stomach(5)|pancreas(5)|endometrium(2)|kidney(2)|cervix(2)|eye(1)	2607	all_epithelial(7;5.11e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		GTACTCTTCTTGTCCAGCTGT	0.458000	Q61L(HEPG2_LIVER)|Q61R(SKMEL2_SKIN)|Q61R(KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(IPC298_SKIN)|Q61P(TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(MHHES1_BONE)|Q61R(HT1197_URINARY_TRACT)|Q61L(MELJUSO_SKIN)|Q61R(ONS76_CENTRAL_NERVOUS_SYSTEM)|Q61R(KU1919_URINARY_TRACT)|Q61L(C3A_LIVER)|Q61R(TT2609C02_THYROID)|Q61R(NCIH2347_LUNG)|Q61L(KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61R(SW1271_LUNG)|Q61L(HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)	50	Mis		melanoma|MM|AML|thyroid				Noonan_syndrome	TSP Lung(23;0.16)|Multiple Myeloma(1;<1E-6)			59	81	---	---	---	---	0	0	0.014410	0	0
CST6	1474	broad.mit.edu	37	11	65780827	65780827	+	Nonsense_Mutation	SNP	C	T	T			TCGA-H2-A2K9-01A-11D-A17V-08	TCGA-H2-A2K9-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	40507884-f752-4b6f-897d-3596bbba94cd	c000393d-a685-4e79-94bc-87176343d388	g.chr11:65780827C>T	uc001ogr.2	+	3	460	c.406C>T	c.(406-408)CAG>TAG	p.Q136*	CST6_uc001ogs.1_3'UTR	NM_001323	NP_001314	Q15828	CYTM_HUMAN	cystatin M precursor	136					anatomical structure morphogenesis	extracellular region	cysteine-type endopeptidase inhibitor activity			ovary(1)	1						GGTTCCCTGGCAGAACTCCTC	0.582000													8	85	---	---	---	---	0	0	0.010729	0	0
ANO2	57101	broad.mit.edu	37	12	5916525	5916525	+	Missense_Mutation	SNP	G	C	C			TCGA-H2-A2K9-01A-11D-A17V-08	TCGA-H2-A2K9-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	40507884-f752-4b6f-897d-3596bbba94cd	c000393d-a685-4e79-94bc-87176343d388	g.chr12:5916525G>C	uc001qnm.2	-	8	962	c.890C>G	c.(889-891)TCT>TGT	p.S297C		NM_020373	NP_065106	Q9NQ90	ANO2_HUMAN	anoctamin 2	302	Cytoplasmic (Potential).					chloride channel complex|plasma membrane	intracellular calcium activated chloride channel activity			ovary(4)|large_intestine(2)|central_nervous_system(1)	7						TGCGATCAGAGAGTTAATACC	0.403000													4	3	---	---	---	---	0	0	0.001168	0	0
Unknown	0	broad.mit.edu	37	14	36841080	36841080	+	Silent	SNP	C	A	A			TCGA-H2-A2K9-01A-11D-A17V-08	TCGA-H2-A2K9-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	40507884-f752-4b6f-897d-3596bbba94cd	c000393d-a685-4e79-94bc-87176343d388	g.chr14:36841080C>A	uc001wtp.2	+	1	711	c.462C>A	c.(460-462)ACC>ACA	p.T154T		NM_199286	NP_954980			stella																		ATCAAGACACCAAGCCACTTC	0.378000													8	99	---	---	---	---	6.19805e-25	3.92543e-24	0.005524	1	0
CATSPERB	79820	broad.mit.edu	37	14	92126274	92126274	+	Missense_Mutation	SNP	G	C	C			TCGA-H2-A2K9-01A-11D-A17V-08	TCGA-H2-A2K9-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	40507884-f752-4b6f-897d-3596bbba94cd	c000393d-a685-4e79-94bc-87176343d388	g.chr14:92126274G>C	uc001xzs.1	-	15	1479	c.1339C>G	c.(1339-1341)CAT>GAT	p.H447D	CATSPERB_uc010aub.1_Intron	NM_024764	NP_079040	Q9H7T0	CTSRB_HUMAN	cation channel, sperm-associated, beta	447					cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				breast(2)|skin(2)|ovary(1)	5		all_cancers(154;0.0663)|all_epithelial(191;0.236)				ATATCATCATGAAAGTTAGCT	0.353000													3	70	---	---	---	---	0	0	0.004672	0	0
ADAM6	8755	broad.mit.edu	37	14	106235608	106235608	+	RNA	SNP	G	A	A			TCGA-H2-A2K9-01A-11D-A17V-08	TCGA-H2-A2K9-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	40507884-f752-4b6f-897d-3596bbba94cd	c000393d-a685-4e79-94bc-87176343d388	g.chr14:106235608G>A	uc010tyt.1	-	3617		c.58239C>T			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Intron|uc001ysf.2_Intron|uc001ysh.1_RNA|uc001ysi.1_RNA					Parts of antibodies, mostly variable regions.												0						GCTCTTCTGCGTGAAGCGGTT	0.622000													29	80	---	---	---	---	0	0	0.007291	0	0
DMXL2	23312	broad.mit.edu	37	15	51837864	51837864	+	Missense_Mutation	SNP	C	A	A			TCGA-H2-A2K9-01A-11D-A17V-08	TCGA-H2-A2K9-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	40507884-f752-4b6f-897d-3596bbba94cd	c000393d-a685-4e79-94bc-87176343d388	g.chr15:51837864C>A	uc002abf.2	-	8	1071	c.846G>T	c.(844-846)CAG>CAT	p.Q282H	DMXL2_uc010ufy.1_Missense_Mutation_p.Q282H|DMXL2_uc010bfa.2_Missense_Mutation_p.Q282H	NM_015263	NP_056078	Q8TDJ6	DMXL2_HUMAN	Dmx-like 2	282						cell junction|synaptic vesicle membrane	Rab GTPase binding			ovary(6)|skin(3)	9				all cancers(107;0.00494)		TCTCACAAATCTGCTCACCCA	0.433000													63	48	---	---	---	---	1.08241e-25	7.15329e-25	0.014410	1	0
GOLGA6L5	374650	broad.mit.edu	37	15	85053142	85053142	+	RNA	SNP	C	T	T			TCGA-H2-A2K9-01A-11D-A17V-08	TCGA-H2-A2K9-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	40507884-f752-4b6f-897d-3596bbba94cd	c000393d-a685-4e79-94bc-87176343d388	g.chr15:85053142C>T	uc002bkm.2	-	9		c.1905G>A			uc002bkl.1_5'Flank	NR_003246				Homo sapiens cDNA FLJ33459 fis, clone BRAMY2000585.												0						TTTTTCAATTCCTTGACCCGC	0.393000													5	7	---	---	---	---	0	0	0.001984	0	0
MYCBPAP	84073	broad.mit.edu	37	17	48596401	48596401	+	Missense_Mutation	SNP	A	T	T			TCGA-H2-A2K9-01A-11D-A17V-08	TCGA-H2-A2K9-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	40507884-f752-4b6f-897d-3596bbba94cd	c000393d-a685-4e79-94bc-87176343d388	g.chr17:48596401A>T	uc010wmr.1	+	6	1010	c.848A>T	c.(847-849)GAG>GTG	p.E283V	MYCBPAP_uc002iqx.2_Missense_Mutation_p.E283V|MYCBPAP_uc002iqz.2_RNA	NM_032133	NP_115509	Q8TBZ2	MYBPP_HUMAN	Myc-binding protein-associated protein	246					cell differentiation|multicellular organismal development|spermatogenesis|synaptic transmission	cytoplasm|membrane	protein binding			urinary_tract(2)|skin(2)|ovary(1)|pancreas(1)	6	Breast(11;1.23e-18)		BRCA - Breast invasive adenocarcinoma(22;1.23e-09)			CGGATCCAGGAGGAGCGGGAG	0.602000													26	38	---	---	---	---	0	0	0.008361	0	0
FUZ	80199	broad.mit.edu	37	19	50315885	50315885	+	Missense_Mutation	SNP	T	C	C			TCGA-H2-A2K9-01A-11D-A17V-08	TCGA-H2-A2K9-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	40507884-f752-4b6f-897d-3596bbba94cd	c000393d-a685-4e79-94bc-87176343d388	g.chr19:50315885T>C	uc002ppq.1	-	2	325	c.220A>G	c.(220-222)AGC>GGC	p.S74G	FUZ_uc002ppr.1_Intron|FUZ_uc002pps.1_RNA|FUZ_uc002ppt.1_RNA|FUZ_uc002ppu.1_Intron|FUZ_uc002ppv.1_Missense_Mutation_p.S24G|FUZ_uc010ybd.1_Missense_Mutation_p.S74G	NM_025129	NP_079405	Q9BT04	FUZZY_HUMAN	fuzzy homolog	74					cilium assembly|embryonic body morphogenesis|embryonic skeletal system morphogenesis|establishment of planar polarity|hair follicle development|neural tube closure|protein transport|regulation of smoothened signaling pathway	cytoplasm|cytoskeleton					0		all_lung(116;1.05e-05)|Lung NSC(112;3.77e-05)|all_neural(266;0.107)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.00793)|GBM - Glioblastoma multiforme(134;0.0116)		TCATGGAAGCTTTTCCACACC	0.572000													3	62	---	---	---	---	0	0	0.009096	0	0
LILRB4	11006	broad.mit.edu	37	19	55179342	55179342	+	Missense_Mutation	SNP	C	T	T			TCGA-H2-A2K9-01A-11D-A17V-08	TCGA-H2-A2K9-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	40507884-f752-4b6f-897d-3596bbba94cd	c000393d-a685-4e79-94bc-87176343d388	g.chr19:55179342C>T	uc002qgp.2	+	12	1581	c.1219C>T	c.(1219-1221)CCC>TCC	p.P407S	LILRB4_uc002qgq.2_Missense_Mutation_p.P406S|LILRB4_uc002qgr.2_Missense_Mutation_p.P449S|LILRB4_uc010ert.2_Missense_Mutation_p.P448S|LILRB4_uc010eru.2_Missense_Mutation_p.P437S	NM_006847	NP_006838	Q8NHJ6	LIRB4_HUMAN	leukocyte immunoglobulin-like receptor,	407	Cytoplasmic (Potential).					integral to membrane|plasma membrane	antigen binding|receptor activity			ovary(3)	3				GBM - Glioblastoma multiforme(193;0.035)		ATCTGAAGCCCCCCAGGATGT	0.647000													4	68	---	---	---	---	0	0	0.009096	0	0
NR4A2	4929	broad.mit.edu	37	2	157182823	157182823	+	Missense_Mutation	SNP	C	T	T			TCGA-H2-A2K9-01A-11D-A17V-08	TCGA-H2-A2K9-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	40507884-f752-4b6f-897d-3596bbba94cd	c000393d-a685-4e79-94bc-87176343d388	g.chr2:157182823C>T	uc002tyz.3	-	7	1801	c.1379G>A	c.(1378-1380)GGT>GAT	p.G460D	NR4A2_uc002tyx.3_Missense_Mutation_p.G397D|NR4A2_uc010zcf.1_Missense_Mutation_p.G460D|NR4A2_uc010zcg.1_Intron	NM_006186	NP_006177	P43354	NR4A2_HUMAN	nuclear receptor subfamily 4, group A, member 2	460					cellular response to extracellular stimulus|dopaminergic neuron differentiation|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to protein stimulus	nucleoplasm	sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(3)	3						GATGAGTTTACCCTCCACTGG	0.428000													23	26	---	---	---	---	0	0	0.004656	0	0
PKDREJ	10343	broad.mit.edu	37	22	46653016	46653016	+	Nonsense_Mutation	SNP	A	C	C			TCGA-H2-A2K9-01A-11D-A17V-08	TCGA-H2-A2K9-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	40507884-f752-4b6f-897d-3596bbba94cd	c000393d-a685-4e79-94bc-87176343d388	g.chr22:46653016A>C	uc003bhh.2	-	1	6204	c.6204T>G	c.(6202-6204)TAT>TAG	p.Y2068*		NM_006071	NP_006062	Q9NTG1	PKDRE_HUMAN	receptor for egg jelly-like protein precursor	2068	Cytoplasmic (Potential).				acrosome reaction|neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity			breast(3)|ovary(2)	5		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00459)		AGAATCTGGAATACCTGAGGG	0.463000													12	16	---	---	---	---	0	0	0.013537	0	0
PENK	5179	broad.mit.edu	37	8	57353902	57353902	+	Missense_Mutation	SNP	C	T	T			TCGA-H2-A2K9-01A-11D-A17V-08	TCGA-H2-A2K9-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	40507884-f752-4b6f-897d-3596bbba94cd	c000393d-a685-4e79-94bc-87176343d388	g.chr8:57353902C>T	uc003xsz.2	-	2	814	c.733G>A	c.(733-735)GAA>AAA	p.E245K	PENK_uc003xta.3_Missense_Mutation_p.E245K	NM_006211	NP_006202	P01210	PENK_HUMAN	proenkephalin	245					neuropeptide signaling pathway	extracellular region	neuropeptide hormone activity|opioid peptide activity			ovary(2)|central_nervous_system(1)|skin(1)	4		all_lung(136;0.229)	Epithelial(17;0.000873)|all cancers(17;0.0069)			TCGCCTTCTTCGTCGGAGGGC	0.498000													23	86	---	---	---	---	0	0	0.002780	0	0
ESRP1	54845	broad.mit.edu	37	8	95683762	95683762	+	Missense_Mutation	SNP	C	T	T			TCGA-H2-A2K9-01A-11D-A17V-08	TCGA-H2-A2K9-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	40507884-f752-4b6f-897d-3596bbba94cd	c000393d-a685-4e79-94bc-87176343d388	g.chr8:95683762C>T	uc003ygq.3	+	11	1498	c.1315C>T	c.(1315-1317)CCC>TCC	p.P439S	ESRP1_uc003ygr.3_Missense_Mutation_p.P439S|ESRP1_uc003ygs.3_Missense_Mutation_p.P439S|ESRP1_uc003ygt.3_Missense_Mutation_p.P439S|ESRP1_uc003ygu.3_Missense_Mutation_p.P439S|ESRP1_uc003ygv.2_Missense_Mutation_p.P279S|ESRP1_uc003ygw.2_Missense_Mutation_p.P279S	NM_017697	NP_060167	Q6NXG1	ESRP1_HUMAN	RNA binding motif protein 35A isoform 1	439					mRNA processing|regulation of RNA splicing|RNA splicing	nucleus|plasma membrane	mRNA binding|nucleotide binding		ESRP1/RAF1(4)	prostate(4)	4						GCAATTTGTGCCCCCTACAAA	0.493000													5	64	---	---	---	---	0	0	0.000602	0	0
DAPK1	1612	broad.mit.edu	37	9	90296352	90296352	+	Nonsense_Mutation	SNP	C	T	T			TCGA-H2-A2K9-01A-11D-A17V-08	TCGA-H2-A2K9-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	40507884-f752-4b6f-897d-3596bbba94cd	c000393d-a685-4e79-94bc-87176343d388	g.chr9:90296352C>T	uc004apc.2	+	20	2173	c.2035C>T	c.(2035-2037)CGA>TGA	p.R679*	DAPK1_uc004apd.2_Nonsense_Mutation_p.R679*|DAPK1_uc011ltg.1_Nonsense_Mutation_p.R679*|DAPK1_uc011lth.1_Nonsense_Mutation_p.R416*|DAPK1_uc004apf.1_Nonsense_Mutation_p.R233*	NM_004938	NP_004929	P53355	DAPK1_HUMAN	death-associated protein kinase 1	679					apoptosis|induction of apoptosis by extracellular signals|intracellular protein kinase cascade	actin cytoskeleton|cytoplasm	ATP binding|calmodulin binding|protein serine/threonine kinase activity			ovary(1)|breast(1)	2						CCAGCAGCTCCGACCCACACA	0.502000									Chronic_Lymphocytic_Leukemia_Familial_Clustering_of				63	86	---	---	---	---	0	0	0.014410	0	0
TBC1D2	55357	broad.mit.edu	37	9	100973003	100973003	+	Silent	SNP	G	A	A			TCGA-H2-A2K9-01A-11D-A17V-08	TCGA-H2-A2K9-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	40507884-f752-4b6f-897d-3596bbba94cd	c000393d-a685-4e79-94bc-87176343d388	g.chr9:100973003G>A	uc011lvb.1	-	8	1788	c.1608C>T	c.(1606-1608)GTC>GTT	p.V536V	TBC1D2_uc004ayp.2_Silent_p.V76V|TBC1D2_uc004ayq.2_Silent_p.V536V|TBC1D2_uc004ayr.2_Silent_p.V318V|TBC1D2_uc004ayo.3_Silent_p.V536V	NM_018421	NP_060891	Q9BYX2	TBD2A_HUMAN	TBC1 domain family, member 2	536						cell junction|cytoplasmic membrane-bounded vesicle|nucleus	Rab GTPase activator activity			ovary(3)	3		Myeloproliferative disorder(762;0.0255)		OV - Ovarian serous cystadenocarcinoma(323;2.55e-37)		GTGCCTCCTGGACAAGCTGCC	0.637000													4	3	---	---	---	---	0	0	0.009096	0	0
Unknown	0	broad.mit.edu	37	10	42672240	42672241	+	IGR	INS	-	TAAG	TAAG	rs71529068		TCGA-H2-A2K9-01A-11D-A17V-08	TCGA-H2-A2K9-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	40507884-f752-4b6f-897d-3596bbba94cd	c000393d-a685-4e79-94bc-87176343d388	g.chr10:42672240_42672241insTAAG								None (None upstream) : LOC441666 (155074 downstream)																							TGGCACATATTTTTGTTACCTC	0.366													4	5	---	---	---	---					
ARAP3	64411	broad.mit.edu	37	5	141041612	141041612	+	Frame_Shift_Del	DEL	G	-	-			TCGA-H2-A2K9-01A-11D-A17V-08	TCGA-H2-A2K9-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	40507884-f752-4b6f-897d-3596bbba94cd	c000393d-a685-4e79-94bc-87176343d388	g.chr5:141041612delG	uc003llm.2	-	20	3089	c.3011delC	c.(3010-3012)GCTfs	p.A1004fs	ARAP3_uc003lll.2_5'UTR|ARAP3_uc011dbe.1_Frame_Shift_Del_p.A666fs|ARAP3_uc003lln.2_Intron	NM_022481	NP_071926	Q8WWN8	ARAP3_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	1004	Rho-GAP.				cytoskeleton organization|negative regulation of cell migration|negative regulation of Rho protein signal transduction|regulation of ARF GTPase activity|regulation of cell shape|small GTPase mediated signal transduction|vesicle-mediated transport	cytoskeleton|cytosol|lamellipodium|plasma membrane|ruffle	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|Rho GTPase activator activity|zinc ion binding			breast(5)|ovary(1)|large_intestine(1)	7						AGGAATACCAGCAGCCTCCCT	0.577													38	30	---	---	---	---					
Unknown	0	broad.mit.edu	37	5	177398373	177398396	+	IGR	DEL	AGGACGAAGAGCTGGAGAGCGCCA	-	-	rs145131557		TCGA-H2-A2K9-01A-11D-A17V-08	TCGA-H2-A2K9-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	40507884-f752-4b6f-897d-3596bbba94cd	c000393d-a685-4e79-94bc-87176343d388	g.chr5:177398373_177398396delAGGACGAAGAGCTGGAGAGCGCCA								LOC728554 (87106 upstream) : PROP1 (20840 downstream)																							GTCCCCGGGGAGGACGAAGAGCTGGAGAGCGCCAAGGACGACGA	0.531													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	5	180708697	180708698	+	IGR	INS	-	A	A	rs70973987		TCGA-H2-A2K9-01A-11D-A17V-08	TCGA-H2-A2K9-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	40507884-f752-4b6f-897d-3596bbba94cd	c000393d-a685-4e79-94bc-87176343d388	g.chr5:180708697_180708698insA								TRIM52 (20578 upstream) : None (None downstream)																							ggggcggtaggcgggggctgga	0.213													2	4	---	---	---	---					
TTLL11	158135	broad.mit.edu	37	9	124855330	124855331	+	In_Frame_Ins	INS	-	TGGCCT	TGGCCT			TCGA-H2-A2K9-01A-11D-A17V-08	TCGA-H2-A2K9-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	40507884-f752-4b6f-897d-3596bbba94cd	c000393d-a685-4e79-94bc-87176343d388	g.chr9:124855330_124855331insTGGCCT	uc004blt.1	-	1	555_556	c.367_368insAGGCCA	c.(367-369)ACA>AAGGCCACA	p.122_123insKA	TTLL11_uc011lyl.1_In_Frame_Ins_p.122_123insKA|TTLL11_uc004blr.2_RNA|TTLL11_uc004blu.1_In_Frame_Ins_p.122_123insKA	NM_194252	NP_919228	Q8NHH1	TTL11_HUMAN	tubulin tyrosine ligase-like family, member 11	122_123					protein modification process	cilium|microtubule basal body	tubulin-tyrosine ligase activity				0						cgtctccgctgtggcctcggcc	0.351													3	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	141032061	141032061	+	IGR	DEL	C	-	-			TCGA-H2-A2K9-01A-11D-A17V-08	TCGA-H2-A2K9-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	40507884-f752-4b6f-897d-3596bbba94cd	c000393d-a685-4e79-94bc-87176343d388	g.chr9:141032061delC								CACNA1B (12986 upstream) : TUBBP5 (12504 downstream)																							ACTGTGGGCTCCCAGCCGTCA	0.597													2	4	---	---	---	---					
