Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
AKR1C3	8644	broad.mit.edu	37	10	5141540	5141540	+	Missense_Mutation	SNP	G	C	C			TCGA-H2-A3RH-01A-11D-A21Z-08	TCGA-H2-A3RH-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	e76ddf7f-bf62-4428-8f38-301ea24157f6	10dd44e4-375e-47c0-b545-60c6dc0d1920	g.chr10:5141540G>C	uc001ihr.2	+	5	652	c.469G>C	c.(469-471)GCA>CCA	p.A157P	AKR1C3_uc010qap.1_Missense_Mutation_p.A134P|AKR1C3_uc001ihu.2_Missense_Mutation_p.A157P	NM_003739	NP_003730	P42330	AK1C3_HUMAN	aldo-keto reductase family 1, member C3	157					prostaglandin metabolic process	cytoplasm	aldo-keto reductase (NADP) activity|androsterone dehydrogenase (A-specific) activity|indanol dehydrogenase activity|prostaglandin-F synthase activity|testosterone 17-beta-dehydrogenase (NAD+) activity|testosterone 17-beta-dehydrogenase (NADP+) activity|trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity			skin(1)	1					Dimethyl sulfoxide(DB01093)|NADH(DB00157)	GTGTAAGGATGCAGGATTGGC	0.498000													3	117	---	---	---	---	0	0	0.004672	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37430948	37430948	+	Missense_Mutation	SNP	C	G	G			TCGA-H2-A3RH-01A-11D-A21Z-08	TCGA-H2-A3RH-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	e76ddf7f-bf62-4428-8f38-301ea24157f6	10dd44e4-375e-47c0-b545-60c6dc0d1920	g.chr10:37430948C>G	uc001iza.1	+	7	1054	c.955C>G	c.(955-957)CCA>GCA	p.P319A		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	375						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						ATTTACGTGGCCAGCAAAAGG	0.423000													4	130	---	---	---	---	0	0	0.009096	0	0
DLG5	9231	broad.mit.edu	37	10	79595529	79595529	+	Missense_Mutation	SNP	C	A	A			TCGA-H2-A3RH-01A-11D-A21Z-08	TCGA-H2-A3RH-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	e76ddf7f-bf62-4428-8f38-301ea24157f6	10dd44e4-375e-47c0-b545-60c6dc0d1920	g.chr10:79595529C>A	uc001jzk.2	-	8	1659	c.1589G>T	c.(1588-1590)CGA>CTA	p.R530L	DLG5_uc001jzj.2_Missense_Mutation_p.R285L|DLG5_uc009xru.1_RNA|DLG5_uc001jzl.3_Missense_Mutation_p.R134L	NM_004747	NP_004738	Q8TDM6	DLG5_HUMAN	discs large homolog 5	530					cell-cell adhesion|intracellular signal transduction|negative regulation of cell proliferation|regulation of apoptosis	cell junction|cytoplasm	beta-catenin binding|cytoskeletal protein binding|receptor signaling complex scaffold activity			ovary(5)|breast(3)	8	all_cancers(46;0.0316)|all_epithelial(25;0.00147)|Breast(12;0.0015)|Prostate(51;0.0146)		Epithelial(14;0.00105)|OV - Ovarian serous cystadenocarcinoma(4;0.00151)|all cancers(16;0.00446)			AATCTTGTCTCGCTCCTGGAA	0.622000													19	22	---	---	---	---	2.37509e-13	2.71439e-13	0.055883	1	0
C10orf12	26148	broad.mit.edu	37	10	98741586	98741586	+	Missense_Mutation	SNP	A	G	G			TCGA-H2-A3RH-01A-11D-A21Z-08	TCGA-H2-A3RH-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	e76ddf7f-bf62-4428-8f38-301ea24157f6	10dd44e4-375e-47c0-b545-60c6dc0d1920	g.chr10:98741586A>G	uc001kmv.2	+	1	546	c.439A>G	c.(439-441)AGG>GGG	p.R147G	C10orf12_uc009xvg.1_Missense_Mutation_p.R457G	NM_015652	NP_056467	Q8N655	CJ012_HUMAN	hypothetical protein LOC26148	147										skin(2)	2		Colorectal(252;0.172)		Epithelial(162;6.35e-09)|all cancers(201;3.21e-07)		GAAAAGTAAAAGGGCATCAGG	0.423000													3	104	---	---	---	---	0	0	0.009096	0	0
OR8K5	219453	broad.mit.edu	37	11	55926983	55926983	+	Missense_Mutation	SNP	C	A	A			TCGA-H2-A3RH-01A-11D-A21Z-08	TCGA-H2-A3RH-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	e76ddf7f-bf62-4428-8f38-301ea24157f6	10dd44e4-375e-47c0-b545-60c6dc0d1920	g.chr11:55926983C>A	uc010rja.1	-	1	811	c.811G>T	c.(811-813)GAT>TAT	p.D271Y		NM_001004058	NP_001004058	Q8NH50	OR8K5_HUMAN	olfactory receptor, family 8, subfamily K,	271	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|skin(1)	4	Esophageal squamous(21;0.00693)	Lung NSC(402;0.197)|all_epithelial(135;0.236)				GCCATTTTATCAGTATCAAAG	0.398000													3	72	---	---	---	---	0.00909568	0.00970206	0.009096	1	0
FLI1	2313	broad.mit.edu	37	11	128680730	128680730	+	Silent	SNP	T	C	C			TCGA-H2-A3RH-01A-11D-A21Z-08	TCGA-H2-A3RH-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	e76ddf7f-bf62-4428-8f38-301ea24157f6	10dd44e4-375e-47c0-b545-60c6dc0d1920	g.chr11:128680730T>C	uc010sbu.1	+	9	1547	c.1206T>C	c.(1204-1206)CCT>CCC	p.P402P	FLI1_uc010sbt.1_Silent_p.P209P|FLI1_uc010sbv.1_Silent_p.P369P|FLI1_uc009zci.2_Silent_p.P336P	NM_002017	NP_002008	Q01543	FLI1_HUMAN	Friend leukemia virus integration 1	402					hemostasis|organ morphogenesis	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		EWSR1/FLI1(2266)	bone(2210)|soft_tissue(48)|autonomic_ganglia(4)|central_nervous_system(4)|lung(3)|ovary(2)|pancreas(2)	2273	all_hematologic(175;0.0641)	Lung NSC(97;0.00588)|all_lung(97;0.00764)|Breast(109;0.0115)|Medulloblastoma(222;0.0523)|all_neural(223;0.0862)|all_hematologic(192;0.182)		OV - Ovarian serous cystadenocarcinoma(99;0.01)|LUSC - Lung squamous cell carcinoma(976;0.0324)|Lung(977;0.0327)		ACTTTGTCCCTCCCCATCCAT	0.567000			T	EWSR1	Ewing sarcoma								3	64	---	---	---	---	0	0	0.009096	0	0
KRAS	3845	broad.mit.edu	37	12	25380277	25380278	+	Missense_Mutation	DNP	GA	TT	TT	rs121913238		TCGA-H2-A3RH-01A-11D-A21Z-08	TCGA-H2-A3RH-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	e76ddf7f-bf62-4428-8f38-301ea24157f6	10dd44e4-375e-47c0-b545-60c6dc0d1920	g.chr12:25380277_25380278GA>TT	uc001rgp.1	-	3	361_362	c.180_181TC>AA	c.(178-183)GGTCAA>GGAAAA	p.Q61K	KRAS_uc001rgq.1_Missense_Mutation_p.Q61K	NM_033360	NP_203524	P01116	RASK_HUMAN	c-K-ras2 protein isoform a precursor	61	GTP.		Q -> R (in a colorectal cancer sample; somatic mutation).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	plasma membrane	GTP binding|GTPase activity|protein binding	p.Q61H(140)|p.Q61L(51)|p.Q61R(44)|p.Q61K(24)|p.Q61P(11)|p.Q61E(10)|p.Q61D(1)		large_intestine(12391)|pancreas(3285)|lung(2847)|biliary_tract(521)|ovary(443)|endometrium(339)|haematopoietic_and_lymphoid_tissue(318)|stomach(203)|thyroid(149)|prostate(85)|soft_tissue(77)|small_intestine(62)|upper_aerodigestive_tract(59)|cervix(49)|urinary_tract(48)|skin(38)|liver(31)|breast(28)|testis(17)|oesophagus(15)|central_nervous_system(9)|peritoneum(6)|salivary_gland(6)|kidney(5)|gastrointestinal_tract_(site_indeterminate)(5)|thymus(5)|eye(4)|autonomic_ganglia(2)|bone(2)|genital_tract(1)|penis(1)|adrenal_gland(1)	21052	all_cancers(2;1e-35)|all_epithelial(2;1.97e-38)|all_lung(3;2.1e-23)|Lung NSC(3;1.16e-22)|Acute lymphoblastic leukemia(6;0.00231)|all_hematologic(7;0.00259)|Melanoma(3;0.0301)|Colorectal(261;0.11)|Ovarian(17;0.12)		OV - Ovarian serous cystadenocarcinoma(3;1.23e-21)|Epithelial(3;1.31e-20)|all cancers(3;5.45e-18)|STAD - Stomach adenocarcinoma(2;2.68e-05)			TACTCCTCTTGACCTGCTGTGT	0.411000	Q61K(CALU6_LUNG)	119	Mis		pancreatic|colorectal|lung|thyroid|AML|others				Cardiofaciocutaneous_syndrome|Noonan_syndrome	TSP Lung(1;<1E-08)|Multiple Myeloma(2;<1E-6)			24	47	---	---	---	---	0	0	0.004672	0	0
SERPINE3	647174	broad.mit.edu	37	13	51915403	51915403	+	Missense_Mutation	SNP	T	C	C			TCGA-H2-A3RH-01A-11D-A21Z-08	TCGA-H2-A3RH-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	e76ddf7f-bf62-4428-8f38-301ea24157f6	10dd44e4-375e-47c0-b545-60c6dc0d1920	g.chr13:51915403T>C	uc001vfh.2	+	1	236	c.176T>C	c.(175-177)CTC>CCC	p.L59P	SERPINE3_uc010tgp.1_Missense_Mutation_p.L59P	NM_001101320	NP_001094790	A8MV23	SERP3_HUMAN	nexin-related serine protease inhibitor	59					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)	2						GGTGTGTCCCTCCCCCTGGAG	0.557000													3	51	---	---	---	---	0	0	0.004672	0	0
IREB2	3658	broad.mit.edu	37	15	78755395	78755395	+	Missense_Mutation	SNP	T	C	C			TCGA-H2-A3RH-01A-11D-A21Z-08	TCGA-H2-A3RH-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	e76ddf7f-bf62-4428-8f38-301ea24157f6	10dd44e4-375e-47c0-b545-60c6dc0d1920	g.chr15:78755395T>C	uc002bdr.2	+	3	400	c.238T>C	c.(238-240)TTT>CTT	p.F80L	IREB2_uc010unb.1_5'UTR|IREB2_uc002bdq.2_Missense_Mutation_p.F80L	NM_004136	NP_004127	P48200	IREB2_HUMAN	iron-responsive element binding protein 2	80							4 iron, 4 sulfur cluster binding|metal ion binding|protein binding				0				UCEC - Uterine corpus endometrioid carcinoma (272;0.232)		TGAAGTGCCCTTTTTCCCTGC	0.358000													4	227	---	---	---	---	0	0	0.014758	0	0
Unknown	0	broad.mit.edu	37	15	102304883	102304884	+	5'Flank	DNP	CG	GA	GA	rs143982735	by1000genomes	TCGA-H2-A3RH-01A-11D-A21Z-08	TCGA-H2-A3RH-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	e76ddf7f-bf62-4428-8f38-301ea24157f6	10dd44e4-375e-47c0-b545-60c6dc0d1920	g.chr15:102304883_102304884CG>GA	uc002cbx.1	-						uc002ccc.1_5'Flank|uc002ccg.3_RNA|uc010uth.1_5'Flank|uc002cci.2_5'Flank|uc002ccj.2_5'Flank|uc002cck.2_5'Flank|uc002ccl.1_5'Flank|uc002ccm.1_5'Flank					DQ582460																		CGCGTGGGAACGAGAAGACACT	0.564000													3	21	---	---	---	---	0	0	0.004672	0	0
RRN3P1	730092	broad.mit.edu	37	16	21817457	21817457	+	Silent	SNP	G	A	A	rs150520281	by1000genomes	TCGA-H2-A3RH-01A-11D-A21Z-08	TCGA-H2-A3RH-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	e76ddf7f-bf62-4428-8f38-301ea24157f6	10dd44e4-375e-47c0-b545-60c6dc0d1920	g.chr16:21817457G>A	uc010vbl.1	-	7	603	c.106C>T	c.(106-108)CTG>TTG	p.L36L	uc002diq.3_Intron	NR_003370				SubName: Full=Putative uncharacterized protein ENSP00000219758;												0						CTTACATCCAGCTTGAGTAGT	0.254000													3	42	---	---	---	---	0	0	0.029380	0	0
KRT35	3886	broad.mit.edu	37	17	39633889	39633889	+	Silent	SNP	G	A	A			TCGA-H2-A3RH-01A-11D-A21Z-08	TCGA-H2-A3RH-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	e76ddf7f-bf62-4428-8f38-301ea24157f6	10dd44e4-375e-47c0-b545-60c6dc0d1920	g.chr17:39633889G>A	uc002hws.2	-	6	1144	c.1101C>T	c.(1099-1101)GCC>GCT	p.A367A		NM_002280	NP_002271	Q92764	KRT35_HUMAN	keratin 35	367	Rod.|Coil 2.				anatomical structure morphogenesis	intermediate filament	protein binding|structural molecule activity			ovary(1)|skin(1)	2		Breast(137;0.000286)				CCCGGATCTCGGCCAGCTGGG	0.647000													5	98	---	---	---	---	0	0	0.014758	0	0
TUBG1	7283	broad.mit.edu	37	17	40762598	40762599	+	Missense_Mutation	DNP	GA	CG	CG			TCGA-H2-A3RH-01A-11D-A21Z-08	TCGA-H2-A3RH-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	e76ddf7f-bf62-4428-8f38-301ea24157f6	10dd44e4-375e-47c0-b545-60c6dc0d1920	g.chr17:40762598_40762599GA>CG	uc002ian.2	+	3	718_719	c.320_321GA>CG	c.(319-321)GGA>GCG	p.G107A	FAM134C_uc002ial.2_5'Flank|FAM134C_uc010wgq.1_5'Flank|FAM134C_uc002iam.1_5'Flank|FAM134C_uc010cyk.1_5'UTR	NM_001070	NP_001061	P23258	TBG1_HUMAN	tubulin, gamma 1	107					G2/M transition of mitotic cell cycle|meiotic spindle organization|protein polymerization	condensed nuclear chromosome|cytosol|gamma-tubulin complex|polar microtubule	GTP binding|GTPase activity|protein binding|structural constituent of cytoskeleton			ovary(1)	1		Breast(137;0.00116)		BRCA - Breast invasive adenocarcinoma(366;0.129)		TGGGCCAGCGGATTCTCCCAGG	0.569000													8	78	---	---	---	---	0	0	0.004672	0	0
MRPL10	124995	broad.mit.edu	37	17	45904011	45904011	+	Missense_Mutation	SNP	G	A	A			TCGA-H2-A3RH-01A-11D-A21Z-08	TCGA-H2-A3RH-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	e76ddf7f-bf62-4428-8f38-301ea24157f6	10dd44e4-375e-47c0-b545-60c6dc0d1920	g.chr17:45904011G>A	uc002ilz.2	-	4	550	c.524C>T	c.(523-525)CCG>CTG	p.P175L	MRPL10_uc010wky.1_Missense_Mutation_p.P136L|MRPL10_uc002ily.2_Missense_Mutation_p.P185L	NM_145255	NP_660298	Q7Z7H8	RM10_HUMAN	mitochondrial ribosomal protein L10 precursor	175					ribosome biogenesis|translation	mitochondrial large ribosomal subunit	structural constituent of ribosome			ovary(1)	1						ACCTAGCAGCGGCAGGAATGG	0.557000													7	119	---	---	---	---	0	0	0.058154	0	0
GRAMD1A	57655	broad.mit.edu	37	19	35500211	35500211	+	Missense_Mutation	SNP	G	A	A			TCGA-H2-A3RH-01A-11D-A21Z-08	TCGA-H2-A3RH-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	e76ddf7f-bf62-4428-8f38-301ea24157f6	10dd44e4-375e-47c0-b545-60c6dc0d1920	g.chr19:35500211G>A	uc010xse.1	+	2	334	c.197G>A	c.(196-198)CGG>CAG	p.R66Q	GRAMD1A_uc002nxi.1_Missense_Mutation_p.R153Q|GRAMD1A_uc002nxk.2_Missense_Mutation_p.R66Q|GRAMD1A_uc002nxl.2_5'UTR|GRAMD1A_uc010xsf.1_Missense_Mutation_p.R71Q	NM_020895	NP_065946	Q96CP6	GRM1A_HUMAN	GRAM domain containing 1A isoform 1	66						integral to membrane					0	all_lung(56;2.66e-08)|Lung NSC(56;4.13e-08)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0849)			CTAGGCAGCCGGAACTTCATC	0.637000													3	69	---	---	---	---	0	0	0.004672	0	0
ZNF135	7694	broad.mit.edu	37	19	58578503	58578503	+	Silent	SNP	G	A	A			TCGA-H2-A3RH-01A-11D-A21Z-08	TCGA-H2-A3RH-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	e76ddf7f-bf62-4428-8f38-301ea24157f6	10dd44e4-375e-47c0-b545-60c6dc0d1920	g.chr19:58578503G>A	uc010yhq.1	+	5	783	c.687G>A	c.(685-687)CAG>CAA	p.Q229Q	ZNF135_uc002qre.2_Silent_p.Q217Q|ZNF135_uc002qrd.1_Silent_p.Q175Q|ZNF135_uc002qrf.2_Silent_p.Q175Q|ZNF135_uc002qrg.2_Silent_p.Q187Q|ZNF135_uc010yhr.1_Silent_p.Q38Q	NM_003436	NP_003427	B4DHH9	B4DHH9_HUMAN	zinc finger protein 135 isoform 2	229					regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0412)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0161)		ACAAATGTCAGGAATGCGGAA	0.473000													3	119	---	---	---	---	0	0	0.004672	0	0
HK2	3099	broad.mit.edu	37	2	75061718	75061718	+	Missense_Mutation	SNP	C	G	G			TCGA-H2-A3RH-01A-11D-A21Z-08	TCGA-H2-A3RH-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	e76ddf7f-bf62-4428-8f38-301ea24157f6	10dd44e4-375e-47c0-b545-60c6dc0d1920	g.chr2:75061718C>G	uc002snd.2	+	1	1937	c.11C>G	c.(10-12)TCG>TGG	p.S4W		NM_000189	NP_000180	P52789	HXK2_HUMAN	hexokinase 2	4	Hydrophobic.				apoptotic mitochondrial changes|glucose transport|glycolysis|transmembrane transport	cytosol|mitochondrial outer membrane	ATP binding|glucokinase activity			ovary(1)|lung(1)	2						ATGATTGCCTCGCATCTGCTT	0.662000													3	106	---	---	---	---	0	0	0.009096	0	0
CNNM4	26504	broad.mit.edu	37	2	97464932	97464932	+	Missense_Mutation	SNP	A	G	G			TCGA-H2-A3RH-01A-11D-A21Z-08	TCGA-H2-A3RH-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	e76ddf7f-bf62-4428-8f38-301ea24157f6	10dd44e4-375e-47c0-b545-60c6dc0d1920	g.chr2:97464932A>G	uc002swx.2	+	4	1918	c.1820A>G	c.(1819-1821)AAG>AGG	p.K607R	CNNM4_uc010yuy.1_Missense_Mutation_p.K94R	NM_020184	NP_064569	Q6P4Q7	CNNM4_HUMAN	cyclin M4	607					biomineral tissue development|ion transport|response to stimulus|visual perception	integral to membrane|plasma membrane				breast(2)|ovary(1)	3						ACCCGAAATAAGCCGGCCGAC	0.582000													3	105	---	---	---	---	0	0	0.004672	0	0
SMARCAL1	50485	broad.mit.edu	37	2	217332707	217332707	+	Missense_Mutation	SNP	T	C	C			TCGA-H2-A3RH-01A-11D-A21Z-08	TCGA-H2-A3RH-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	e76ddf7f-bf62-4428-8f38-301ea24157f6	10dd44e4-375e-47c0-b545-60c6dc0d1920	g.chr2:217332707T>C	uc002vgc.3	+	14	2512	c.2182T>C	c.(2182-2184)TTT>CTT	p.F728L	SMARCAL1_uc010fvf.2_RNA|SMARCAL1_uc002vgd.3_Missense_Mutation_p.F728L|SMARCAL1_uc010fvg.2_Missense_Mutation_p.F706L	NM_014140	NP_054859	Q9NZC9	SMAL1_HUMAN	SWI/SNF-related matrix-associated	728	Helicase C-terminal.				chromatin modification|DNA metabolic process|regulation of transcription from RNA polymerase II promoter	nucleus	ATP binding|DNA binding|DNA helicase activity|DNA-dependent ATPase activity			ovary(3)|breast(3)|skin(1)	7		Renal(323;0.0458)		Epithelial(149;9.48e-06)|all cancers(144;0.000621)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.0111)		AAGAGAGAAGTTTTTAGTATT	0.393000									Schimke_Immuno-Osseous_Dysplasia				4	106	---	---	---	---	0	0	0.009096	0	0
RAF1	5894	broad.mit.edu	37	3	12626642	12626642	+	Silent	SNP	A	G	G			TCGA-H2-A3RH-01A-11D-A21Z-08	TCGA-H2-A3RH-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	e76ddf7f-bf62-4428-8f38-301ea24157f6	10dd44e4-375e-47c0-b545-60c6dc0d1920	g.chr3:12626642A>G	uc003bxf.3	-	15	2062	c.1647T>C	c.(1645-1647)TCT>TCC	p.S549S	RAF1_uc011aut.1_Silent_p.S334S|RAF1_uc011auu.1_Silent_p.S467S	NM_002880	NP_002871	P04049	RAF1_HUMAN	v-raf-1 murine leukemia viral oncogene homolog	549	Protein kinase.				activation of MAPKK activity|apoptosis|axon guidance|cell proliferation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|negative regulation of apoptosis|negative regulation of cell proliferation|negative regulation of protein complex assembly|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of peptidyl-serine phosphorylation|Ras protein signal transduction|synaptic transmission	cytosol|mitochondrial outer membrane|plasma membrane	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|receptor signaling protein activity		ESRP1/RAF1(4)|SRGAP3/RAF1(4)	central_nervous_system(4)|prostate(4)|lung(2)|upper_aerodigestive_tract(1)|stomach(1)|liver(1)|ovary(1)	14					Sorafenib(DB00398)	TGTTGATGTGAGAATAAGGAA	0.522000			T	SRGAP3	pilocytic astrocytoma				Noonan_syndrome				3	87	---	---	---	---	0	0	0.014758	0	0
PLK4	10733	broad.mit.edu	37	4	128806990	128806990	+	Missense_Mutation	SNP	T	G	G			TCGA-H2-A3RH-01A-11D-A21Z-08	TCGA-H2-A3RH-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	e76ddf7f-bf62-4428-8f38-301ea24157f6	10dd44e4-375e-47c0-b545-60c6dc0d1920	g.chr4:128806990T>G	uc003ifo.2	+	5	710	c.465T>G	c.(463-465)TTT>TTG	p.F155L	PLK4_uc011cgs.1_Missense_Mutation_p.F123L|PLK4_uc011cgt.1_Missense_Mutation_p.F114L	NM_014264	NP_055079	O00444	PLK4_HUMAN	polo-like kinase 4	155	Protein kinase.				G2/M transition of mitotic cell cycle|positive regulation of centriole replication|trophoblast giant cell differentiation	centriole|cleavage furrow|cytosol|nucleolus	ATP binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity				0						TTGCTGATTTTGGGCTGGCAA	0.418000													3	170	---	---	---	---	0	0	0.014758	0	0
GRM4	2914	broad.mit.edu	37	6	34003992	34003992	+	Missense_Mutation	SNP	C	T	T			TCGA-H2-A3RH-01A-11D-A21Z-08	TCGA-H2-A3RH-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	e76ddf7f-bf62-4428-8f38-301ea24157f6	10dd44e4-375e-47c0-b545-60c6dc0d1920	g.chr6:34003992C>T	uc003oir.3	-	8	2065	c.1895G>A	c.(1894-1896)GGC>GAC	p.G632D	GRM4_uc011dsn.1_Missense_Mutation_p.G585D|GRM4_uc010jvh.2_Missense_Mutation_p.G632D|GRM4_uc010jvi.2_Missense_Mutation_p.G324D|GRM4_uc003oio.2_Missense_Mutation_p.G324D|GRM4_uc003oip.2_RNA|GRM4_uc011dsl.1_Missense_Mutation_p.G492D|GRM4_uc003oiq.2_Missense_Mutation_p.G499D|GRM4_uc011dsm.1_Missense_Mutation_p.G463D	NM_000841	NP_000832	Q14833	GRM4_HUMAN	glutamate receptor, metabotropic 4 precursor	632	Helical; Name=2; (Potential).				activation of MAPK activity|inhibition of adenylate cyclase activity by metabotropic glutamate receptor signaling pathway|neuroprotection|neurotransmitter secretion|positive regulation of MAPKKK cascade	cytoplasmic vesicle|integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			lung(3)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	6					L-Glutamic Acid(DB00142)	CAGGAAGATGCCTGCCAGCAG	0.597000													3	44	---	---	---	---	0	0	0.004672	0	0
PHF3	23469	broad.mit.edu	37	6	64394725	64394725	+	Missense_Mutation	SNP	G	A	A			TCGA-H2-A3RH-01A-11D-A21Z-08	TCGA-H2-A3RH-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	e76ddf7f-bf62-4428-8f38-301ea24157f6	10dd44e4-375e-47c0-b545-60c6dc0d1920	g.chr6:64394725G>A	uc003pep.1	+	3	1128	c.1102G>A	c.(1102-1104)GAT>AAT	p.D368N	PHF3_uc010kaf.1_Missense_Mutation_p.D368N|PHF3_uc003pem.2_Missense_Mutation_p.D321N|PHF3_uc010kag.1_Missense_Mutation_p.D280N|PHF3_uc010kah.1_Missense_Mutation_p.D182N|PHF3_uc003pen.2_Missense_Mutation_p.D280N|PHF3_uc011dxs.1_Intron|PHF3_uc003peo.2_Missense_Mutation_p.D368N	NM_015153	NP_055968	Q92576	PHF3_HUMAN	PHD finger protein 3	368					multicellular organismal development|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(3)|lung(1)|skin(1)	5	all_cancers(3;0.0241)|all_epithelial(2;0.00306)|Lung NSC(77;0.121)		LUSC - Lung squamous cell carcinoma(74;0.0644)|Lung(124;0.148)			TAGTTGTGTAGATGAAGTGAC	0.373000													32	67	---	---	---	---	0	0	0.064281	0	0
IQCE	23288	broad.mit.edu	37	7	2613074	2613074	+	Silent	SNP	C	A	A			TCGA-H2-A3RH-01A-11D-A21Z-08	TCGA-H2-A3RH-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	e76ddf7f-bf62-4428-8f38-301ea24157f6	10dd44e4-375e-47c0-b545-60c6dc0d1920	g.chr7:2613074C>A	uc003smo.3	+	6	601	c.417C>A	c.(415-417)GTC>GTA	p.V139V	IQCE_uc010ksm.1_Silent_p.V139V|IQCE_uc003sml.1_Silent_p.V139V|IQCE_uc011jvy.1_Silent_p.V123V|IQCE_uc011jvz.1_Silent_p.V74V|IQCE_uc003smk.3_Silent_p.V123V|IQCE_uc003smn.3_Silent_p.V74V	NM_152558	NP_689771	Q6IPM2	IQCE_HUMAN	IQ motif containing E isoform 1	139											0		Ovarian(82;0.0112)		OV - Ovarian serous cystadenocarcinoma(56;1.23e-13)		GGACTCCTGTCTACAGAGAAA	0.348000													3	53	---	---	---	---	0.00024832	0.000274008	0.009096	1	0
FAM71F1	84691	broad.mit.edu	37	7	128359074	128359074	+	Silent	SNP	T	A	A			TCGA-H2-A3RH-01A-11D-A21Z-08	TCGA-H2-A3RH-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	e76ddf7f-bf62-4428-8f38-301ea24157f6	10dd44e4-375e-47c0-b545-60c6dc0d1920	g.chr7:128359074T>A	uc003vno.1	+	3	677	c.624T>A	c.(622-624)CCT>CCA	p.P208P	FAM71F1_uc010llo.1_Silent_p.P109P|FAM71F1_uc011koq.1_Silent_p.P100P|FAM71F1_uc003vnm.1_RNA|FAM71F1_uc003vnn.1_Silent_p.P109P|FAM71F1_uc010llp.1_RNA|FAM71F1_uc003vnp.1_Silent_p.P208P	NM_032599	NP_115988	Q96KD3	F71F1_HUMAN	testes development-related NYD-SP18	208										skin(1)	1						CCAAAGACCCTAGGATTCTTG	0.532000													69	85	---	---	---	---	0	0	0.048971	0	0
ANK1	286	broad.mit.edu	37	8	41530362	41530362	+	Missense_Mutation	SNP	G	A	A	rs146416859	byFrequency	TCGA-H2-A3RH-01A-11D-A21Z-08	TCGA-H2-A3RH-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	e76ddf7f-bf62-4428-8f38-301ea24157f6	10dd44e4-375e-47c0-b545-60c6dc0d1920	g.chr8:41530362G>A	uc003xok.2	-	38	4690	c.4606C>T	c.(4606-4608)CGT>TGT	p.R1536C	NKX6-3_uc010lxa.1_Intron|ANK1_uc003xoh.2_Intron|ANK1_uc003xoi.2_Missense_Mutation_p.R1536C|ANK1_uc003xoj.2_Missense_Mutation_p.R1536C|ANK1_uc003xol.2_Intron|ANK1_uc003xom.2_Missense_Mutation_p.R1577C	NM_020476	NP_065209	P16157	ANK1_HUMAN	ankyrin 1 isoform 1	1536	55 kDa regulatory domain.				axon guidance|cytoskeleton organization|exocytosis|maintenance of epithelial cell apical/basal polarity|signal transduction	basolateral plasma membrane|cytosol|sarcomere|sarcoplasmic reticulum|spectrin-associated cytoskeleton	cytoskeletal adaptor activity|enzyme binding|protein binding|spectrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(3)|lung(2)|breast(1)	9	Ovarian(28;0.00541)|Colorectal(14;0.0398)|Lung SC(25;0.211)	all_lung(54;0.000626)|Lung NSC(58;0.00245)|Esophageal squamous(32;0.0559)|Hepatocellular(245;0.0663)|Renal(179;0.188)	OV - Ovarian serous cystadenocarcinoma(14;0.000984)|Lung(22;0.00108)|Colorectal(10;0.00245)|LUSC - Lung squamous cell carcinoma(45;0.00392)|COAD - Colon adenocarcinoma(11;0.0264)			TGGTCTGCACGTAGCGGAGAG	0.607000													11	19	---	---	---	---	0	0	0.105934	0	0
PSIP1	11168	broad.mit.edu	37	9	15474206	15474206	+	Missense_Mutation	SNP	T	C	C			TCGA-H2-A3RH-01A-11D-A21Z-08	TCGA-H2-A3RH-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	e76ddf7f-bf62-4428-8f38-301ea24157f6	10dd44e4-375e-47c0-b545-60c6dc0d1920	g.chr9:15474206T>C	uc003zlv.3	-	9	989	c.659A>G	c.(658-660)AAG>AGG	p.K220R	PSIP1_uc003zlw.3_Missense_Mutation_p.K220R|PSIP1_uc003zlz.3_Missense_Mutation_p.K220R|PSIP1_uc003zma.3_Missense_Mutation_p.K211R|PSIP1_uc003zly.2_Missense_Mutation_p.K220R	NM_033222	NP_150091	O75475	PSIP1_HUMAN	PC4 and SFRS1 interacting protein 1 isoform 2	220					initiation of viral infection|interspecies interaction between organisms|nuclear mRNA 5'-splice site recognition|provirus integration|regulation of transcription, DNA-dependent|response to heat|response to oxidative stress|transcription, DNA-dependent	cytosol|nuclear heterochromatin|nuclear periphery|nucleoplasm|nucleoplasm|transcriptionally active chromatin	activating transcription factor binding|chromatin binding|DNA secondary structure binding|RNA polymerase II transcription coactivator activity			breast(1)	1				GBM - Glioblastoma multiforme(50;2.38e-06)		CTCTTGCCCCTTTTTCTTACT	0.358000													4	302	---	---	---	---	0	0	0.009096	0	0
RSPO1	284654	broad.mit.edu	37	1	38078467	38078469	+	In_Frame_Del	DEL	TGC	-	-			TCGA-H2-A3RH-01A-11D-A21Z-08	TCGA-H2-A3RH-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	e76ddf7f-bf62-4428-8f38-301ea24157f6	10dd44e4-375e-47c0-b545-60c6dc0d1920	g.chr1:38078467_38078469delTGC	uc001cbl.1	-	8	1538_1540	c.750_752delGCA	c.(748-753)CAGCAA>CAA	p.250_251QQ>Q	RSPO1_uc001cbm.1_In_Frame_Del_p.250_251QQ>Q|RSPO1_uc009vvf.1_In_Frame_Del_p.223_224QQ>Q|RSPO1_uc009vvg.1_In_Frame_Del_p.187_188QQ>Q	NM_001038633	NP_001033722	Q2MKA7	RSPO1_HUMAN	R-spondin1 precursor	250_251					positive regulation of canonical Wnt receptor signaling pathway|regulation of receptor internalization		heparin binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				CACTGTCCCTTGCTGCTGCTGCT	0.621													7	261	---	---	---	---					
Unknown	0	broad.mit.edu	37	1	121484720	121484721	+	IGR	INS	-	G	G	rs2200142		TCGA-H2-A3RH-01A-11D-A21Z-08	TCGA-H2-A3RH-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	e76ddf7f-bf62-4428-8f38-301ea24157f6	10dd44e4-375e-47c0-b545-60c6dc0d1920	g.chr1:121484720_121484721insG								LOC647121 (171034 upstream) : None (None downstream)																							tctttggaaacggttttttctc	0.000													16	586	---	---	---	---					
Unknown	0	broad.mit.edu	37	1	153198550	153198550	+	IGR	DEL	A	-	-			TCGA-H2-A3RH-01A-11D-A21Z-08	TCGA-H2-A3RH-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	e76ddf7f-bf62-4428-8f38-301ea24157f6	10dd44e4-375e-47c0-b545-60c6dc0d1920	g.chr1:153198550delA								LELP1 (20956 upstream) : LOR (33629 downstream)																							tacttctttcaaaaaaaaatg	0.149													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42392726	42392748	+	IGR	DEL	AATCGAATGGAATTATCGAATGC	-	-	rs67625628		TCGA-H2-A3RH-01A-11D-A21Z-08	TCGA-H2-A3RH-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	e76ddf7f-bf62-4428-8f38-301ea24157f6	10dd44e4-375e-47c0-b545-60c6dc0d1920	g.chr10:42392726_42392748delAATCGAATGGAATTATCGAATGC								None (None upstream) : LOC441666 (434567 downstream)																							cctcaaatggaatcgaatggaattatcgaatgcaatcgaatgg	0.000													8	1114	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42396450	42396450	+	IGR	DEL	T	-	-			TCGA-H2-A3RH-01A-11D-A21Z-08	TCGA-H2-A3RH-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	e76ddf7f-bf62-4428-8f38-301ea24157f6	10dd44e4-375e-47c0-b545-60c6dc0d1920	g.chr10:42396450delT								None (None upstream) : LOC441666 (430865 downstream)																							tggtctcgaatggaatcacct	0.000													9	148	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42596908	42596910	+	IGR	DEL	TCA	-	-	rs74210869		TCGA-H2-A3RH-01A-11D-A21Z-08	TCGA-H2-A3RH-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	e76ddf7f-bf62-4428-8f38-301ea24157f6	10dd44e4-375e-47c0-b545-60c6dc0d1920	g.chr10:42596908_42596910delTCA								None (None upstream) : LOC441666 (230405 downstream)																							ggaatcatcttcaaatggaaagg	0.000													15	853	---	---	---	---					
Unknown	0	broad.mit.edu	37	12	9557206	9557207	+	IGR	DEL	GG	-	-			TCGA-H2-A3RH-01A-11D-A21Z-08	TCGA-H2-A3RH-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	e76ddf7f-bf62-4428-8f38-301ea24157f6	10dd44e4-375e-47c0-b545-60c6dc0d1920	g.chr12:9557206_9557207delGG								LOC642846 (90522 upstream) : DDX12 (13081 downstream)																							ACCGCGAGGCGGGGGGGGGGGG	0.708													2	4	---	---	---	---					
SACS	26278	broad.mit.edu	37	13	23913335	23913340	+	In_Frame_Del	DEL	AAATCC	-	-			TCGA-H2-A3RH-01A-11D-A21Z-08	TCGA-H2-A3RH-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	e76ddf7f-bf62-4428-8f38-301ea24157f6	10dd44e4-375e-47c0-b545-60c6dc0d1920	g.chr13:23913335_23913340delAAATCC	uc001uon.2	-	10	5264_5269	c.4675_4680delGGATTT	c.(4675-4680)GGATTTdel	p.GF1559del	SACS_uc001uoo.2_In_Frame_Del_p.GF1412del|SACS_uc001uop.1_Intron|SACS_uc001uoq.1_Intron	NM_014363	NP_055178	Q9NZJ4	SACS_HUMAN	sacsin	1559_1560					cell death|negative regulation of inclusion body assembly|protein folding	axon|cell body fiber|dendrite|mitochondrion|nucleus	ATP binding|chaperone binding|Hsp70 protein binding|proteasome binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		all_cancers(29;1.51e-22)|all_epithelial(30;7.82e-19)|all_lung(29;4.71e-18)|Lung SC(185;0.0225)|Breast(139;0.128)		all cancers(112;0.00197)|Epithelial(112;0.00854)|OV - Ovarian serous cystadenocarcinoma(117;0.0298)|Lung(94;0.189)		ACACAGAATTAAATCCAAGACCAAAT	0.330													10	140	---	---	---	---					
Unknown	0	broad.mit.edu	37	18	33422636	33422637	+	IGR	INS	-	A	A	rs142073173	by1000genomes	TCGA-H2-A3RH-01A-11D-A21Z-08	TCGA-H2-A3RH-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	e76ddf7f-bf62-4428-8f38-301ea24157f6	10dd44e4-375e-47c0-b545-60c6dc0d1920	g.chr18:33422636_33422637insA								GALNT1 (130839 upstream) : MIR187 (62144 downstream)																							AGTTAATGCAGAAAAAAAAATG	0.391													3	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	27738491	27738491	+	IGR	DEL	T	-	-			TCGA-H2-A3RH-01A-11D-A21Z-08	TCGA-H2-A3RH-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	e76ddf7f-bf62-4428-8f38-301ea24157f6	10dd44e4-375e-47c0-b545-60c6dc0d1920	g.chr19:27738491delT								None (None upstream) : LOC148189 (542911 downstream)																							tggaaacgggtttttttcatg	0.000													33	541	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	48298226	48298237	+	IGR	DEL	TGCTGGGCGTGG	-	-	rs61719038		TCGA-H2-A3RH-01A-11D-A21Z-08	TCGA-H2-A3RH-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	e76ddf7f-bf62-4428-8f38-301ea24157f6	10dd44e4-375e-47c0-b545-60c6dc0d1920	g.chr19:48298226_48298237delTGCTGGGCGTGG								SEPW1 (10287 upstream) : TPRX1 (6263 downstream)																							ATGGAGTCTTTgctgggcgtggtggctcacgc	0.175													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	133118724	133118724	+	IGR	DEL	G	-	-			TCGA-H2-A3RH-01A-11D-A21Z-08	TCGA-H2-A3RH-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	e76ddf7f-bf62-4428-8f38-301ea24157f6	10dd44e4-375e-47c0-b545-60c6dc0d1920	g.chr2:133118724delG								NCRNA00164 (103182 upstream) : GPR39 (55423 downstream)																							TGCAGGCACAGGGCAGGCATT	0.726													2	4	---	---	---	---					
STK39	27347	broad.mit.edu	37	2	169103865	169103866	+	In_Frame_Ins	INS	-	GCC	GCC			TCGA-H2-A3RH-01A-11D-A21Z-08	TCGA-H2-A3RH-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	e76ddf7f-bf62-4428-8f38-301ea24157f6	10dd44e4-375e-47c0-b545-60c6dc0d1920	g.chr2:169103865_169103866insGCC	uc002uea.2	-	1	240_241	c.80_81insGGC	c.(79-81)GCC>GCGGCC	p.27_27A>AA		NM_013233	NP_037365	Q9UEW8	STK39_HUMAN	serine threonine kinase 39 (STE20/SPS1 homolog,	27	Ala/Pro-rich.				response to stress	cytoplasm|nucleus	ATP binding|protein binding|receptor signaling protein serine/threonine kinase activity			central_nervous_system(1)|skin(1)	2						cggccgccggggccgccgccgc	0.376													3	5	---	---	---	---					
PRAME	23532	broad.mit.edu	37	22	22900793	22900794	+	5'Flank	INS	-	G	G			TCGA-H2-A3RH-01A-11D-A21Z-08	TCGA-H2-A3RH-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	e76ddf7f-bf62-4428-8f38-301ea24157f6	10dd44e4-375e-47c0-b545-60c6dc0d1920	g.chr22:22900793_22900794insG	uc002zwf.2	-						LOC96610_uc011aim.1_Intron|PRAME_uc010gtr.2_5'Flank|PRAME_uc002zwg.2_Intron|PRAME_uc002zwh.2_Intron|PRAME_uc002zwi.2_Intron|PRAME_uc002zwj.2_Intron|PRAME_uc002zwk.2_Intron|LOC648691_uc011ais.1_5'Flank	NM_206956	NP_996839	P78395	PRAME_HUMAN	preferentially expressed antigen in melanoma						apoptosis|cell differentiation|negative regulation of apoptosis|negative regulation of cell differentiation|negative regulation of retinoic acid receptor signaling pathway|negative regulation of transcription, DNA-dependent|positive regulation of cell proliferation|regulation of growth|transcription, DNA-dependent	nucleus|plasma membrane	retinoic acid receptor binding			central_nervous_system(2)	2	all_hematologic(9;0.0135)|Acute lymphoblastic leukemia(84;0.17)	all_hematologic(6;1.74e-30)|Acute lymphoblastic leukemia(6;7.75e-22)|all_lung(157;4.03e-05)		READ - Rectum adenocarcinoma(21;0.0649)		ggggtggggatgggggaaggga	0.050													2	4	---	---	---	---					
NEK11	79858	broad.mit.edu	37	3	130881254	130881254	+	Frame_Shift_Del	DEL	A	-	-			TCGA-H2-A3RH-01A-11D-A21Z-08	TCGA-H2-A3RH-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	e76ddf7f-bf62-4428-8f38-301ea24157f6	10dd44e4-375e-47c0-b545-60c6dc0d1920	g.chr3:130881254delA	uc003eny.2	+	11	1291	c.965delA	c.(964-966)CAAfs	p.Q322fs	NEK11_uc003enx.2_Frame_Shift_Del_p.Q322fs|NEK11_uc003eoa.2_Frame_Shift_Del_p.Q322fs|NEK11_uc003enz.2_Frame_Shift_Del_p.Q140fs|NEK11_uc010htn.2_RNA|NEK11_uc011blk.1_Frame_Shift_Del_p.Q174fs|NEK11_uc011bll.1_Frame_Shift_Del_p.Q217fs|NEK11_uc011blm.1_Frame_Shift_Del_p.Q322fs	NM_024800	NP_079076	Q8NG66	NEK11_HUMAN	NIMA-related kinase 11 isoform 1	322					cell cycle|intra-S DNA damage checkpoint|intracellular protein kinase cascade	nucleolus	ATP binding|identical protein binding|metal ion binding|protein serine/threonine kinase activity			large_intestine(4)|stomach(1)|central_nervous_system(1)	6						ATTTATAGGCAAAAAAGGATC	0.423													8	488	---	---	---	---					
Unknown	0	broad.mit.edu	37	5	40579344	40579346	+	IGR	DEL	GAG	-	-			TCGA-H2-A3RH-01A-11D-A21Z-08	TCGA-H2-A3RH-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	e76ddf7f-bf62-4428-8f38-301ea24157f6	10dd44e4-375e-47c0-b545-60c6dc0d1920	g.chr5:40579344_40579346delGAG								None (None upstream) : PTGER4 (100686 downstream)																							ggaggaggaagaggaggaggagg	0.345													3	4	---	---	---	---					
EEF1A1	1915	broad.mit.edu	37	6	74228155	74228158	+	Frame_Shift_Del	DEL	GACA	-	-			TCGA-H2-A3RH-01A-11D-A21Z-08	TCGA-H2-A3RH-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	e76ddf7f-bf62-4428-8f38-301ea24157f6	10dd44e4-375e-47c0-b545-60c6dc0d1920	g.chr6:74228155_74228158delGACA	uc003phi.2	-	5	985_988	c.948_951delTGTC	c.(946-951)TCTGTCfs	p.S316fs	EEF1A1_uc003phd.2_Frame_Shift_Del_p.S41fs|EEF1A1_uc003phe.2_Frame_Shift_Del_p.S306fs|EEF1A1_uc003phf.2_Frame_Shift_Del_p.S316fs|EEF1A1_uc003phg.2_Frame_Shift_Del_p.S316fs|EEF1A1_uc003phh.2_Frame_Shift_Del_p.S162fs|EEF1A1_uc003phj.2_Frame_Shift_Del_p.S316fs|EEF1A1_uc003phk.2_Frame_Shift_Del_p.S316fs|EEF1A1_uc003phl.2_Intron|EEF1A1_uc003phm.1_Intron	NM_001402	NP_001393	P68104	EF1A1_HUMAN	eukaryotic translation elongation factor 1 alpha	316_317						cytosol|eukaryotic translation elongation factor 1 complex	GTP binding|GTPase activity|protein binding|translation elongation factor activity				0						GAACATCCTTGACAGACACATTCT	0.446											OREG0003895	type=REGULATORY REGION|Gene=D16891|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	35	43	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	93513725	93513727	+	IGR	DEL	AAC	-	-	rs34140480		TCGA-H2-A3RH-01A-11D-A21Z-08	TCGA-H2-A3RH-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	e76ddf7f-bf62-4428-8f38-301ea24157f6	10dd44e4-375e-47c0-b545-60c6dc0d1920	g.chr9:93513725_93513727delAAC								DIRAS2 (108617 upstream) : SYK (50285 downstream)																							AAAATAAGCAAACAACTGCCAGG	0.478													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	133834150	133834152	+	IGR	DEL	CAC	-	-			TCGA-H2-A3RH-01A-11D-A21Z-08	TCGA-H2-A3RH-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	e76ddf7f-bf62-4428-8f38-301ea24157f6	10dd44e4-375e-47c0-b545-60c6dc0d1920	g.chr9:133834150_133834152delCAC								FIBCD1 (19695 upstream) : LAMC3 (50352 downstream)																							ccatcaccatcaccaccaccacc	0.000													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	Y	13483364	13483364	+	IGR	DEL	T	-	-			TCGA-H2-A3RH-01A-11D-A21Z-08	TCGA-H2-A3RH-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	e76ddf7f-bf62-4428-8f38-301ea24157f6	10dd44e4-375e-47c0-b545-60c6dc0d1920	g.chrY:13483364delT								None (None upstream) : None (None downstream)																							tctgtcacaattcccctttag	0.000													14	28	---	---	---	---					
