Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
WASH7P	653635	broad.mit.edu	37	1	14976	14976	+	RNA	SNP	G	A	A			TCGA-J8-A3NZ-01A-11D-A21A-08	TCGA-J8-A3NZ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	862a2fcb-d576-4e6f-9a5e-fbd57fed25f0	0dbbbd24-6a84-45d4-aec5-6e394cb1c1b2	g.chr1:14976G>A	uc009vis.2	-	3		c.369C>T			WASH7P_uc009vit.2_RNA|WASH7P_uc001aae.3_RNA|WASH7P_uc009viu.2_RNA|WASH7P_uc001aab.3_RNA|WASH7P_uc001aah.3_RNA|WASH7P_uc009vir.2_RNA|WASH7P_uc009viq.2_Intron|WASH7P_uc001aac.3_RNA|WASH7P_uc009viv.2_RNA|WASH7P_uc009viw.2_RNA					Homo sapiens cDNA FLJ31670 fis, clone NT2RI2004984.												0						CTACCCTTGCGCCTCATGACC	0.582000													4	8	---	---	---	---	0	0	0.029380	0	0
GJA4	2701	broad.mit.edu	37	1	35260771	35260771	+	Silent	SNP	C	G	G			TCGA-J8-A3NZ-01A-11D-A21A-08	TCGA-J8-A3NZ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	862a2fcb-d576-4e6f-9a5e-fbd57fed25f0	0dbbbd24-6a84-45d4-aec5-6e394cb1c1b2	g.chr1:35260771C>G	uc001bya.2	+	2	1045	c.957C>G	c.(955-957)CCC>CCG	p.P319P	GJA4_uc009vul.2_Silent_p.P395P|GJA4_uc009vum.1_Silent_p.P319P	NM_002060	NP_002051	P35212	CXA4_HUMAN	connexin 37	319	Cytoplasmic (Potential).				cell-cell junction assembly	integral to plasma membrane				central_nervous_system(1)	1		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.234)				GCCAAAAACCCCCAAGTCGTC	0.587000													13	51	---	---	---	---	0	0	0.028581	0	0
NBPF10	100132406	broad.mit.edu	37	1	145328378	145328378	+	Missense_Mutation	SNP	T	C	C			TCGA-J8-A3NZ-01A-11D-A21A-08	TCGA-J8-A3NZ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	862a2fcb-d576-4e6f-9a5e-fbd57fed25f0	0dbbbd24-6a84-45d4-aec5-6e394cb1c1b2	g.chr1:145328378T>C	uc001end.3	+	35	4486	c.4451T>C	c.(4450-4452)ATT>ACT	p.I1484T	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF10_uc001emp.3_Intron|NBPF10_uc010oyi.1_Intron|NBPF10_uc010oyk.1_Intron|NBPF10_uc010oyl.1_Intron|NBPF10_uc001enc.2_Intron|NBPF10_uc010oym.1_Intron|NBPF10_uc010oyn.1_Intron|NBPF10_uc010oyo.1_Intron|NBPF10_uc010oyp.1_Intron	NM_001039703	NP_001034792	A6NDV3	A6NDV3_HUMAN	hypothetical protein LOC100132406	1409											0	all_hematologic(923;0.032)			Colorectal(1306;1.36e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)		ATTGCAGGAATTAAAAAGGAC	0.463000													3	51	---	---	---	---	0	0	0.004672	0	0
OR52N2	390077	broad.mit.edu	37	11	5841775	5841775	+	Missense_Mutation	SNP	C	G	G			TCGA-J8-A3NZ-01A-11D-A21A-08	TCGA-J8-A3NZ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	862a2fcb-d576-4e6f-9a5e-fbd57fed25f0	0dbbbd24-6a84-45d4-aec5-6e394cb1c1b2	g.chr11:5841775C>G	uc010qzp.1	+	1	210	c.210C>G	c.(208-210)TTC>TTG	p.F70L	TRIM5_uc001mbq.1_Intron	NM_001005174	NP_001005174	Q8NGI0	O52N2_HUMAN	olfactory receptor, family 52, subfamily N,	70	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;2.49e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TGCTCTCCTTCACTGATGTCA	0.537000													3	203	---	---	---	---	0	0	0.009096	0	0
OR56A5	390084	broad.mit.edu	37	11	5989487	5989487	+	Missense_Mutation	SNP	C	T	T			TCGA-J8-A3NZ-01A-11D-A21A-08	TCGA-J8-A3NZ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	862a2fcb-d576-4e6f-9a5e-fbd57fed25f0	0dbbbd24-6a84-45d4-aec5-6e394cb1c1b2	g.chr11:5989487C>T	uc010qzu.1	-	1	238	c.238G>A	c.(238-240)GTC>ATC	p.V80I		NM_001146033	NP_001139505	P0C7T3	O56A5_HUMAN	olfactory receptor, family 56, subfamily A,	80	Helical; Name=2; (Potential).					integral to membrane|plasma membrane	olfactory receptor activity				0						TTGGGGATGACGGTGAGGCAG	0.532000													40	72	---	---	---	---	0	0	0.048971	0	0
TAS2R46	259292	broad.mit.edu	37	12	11214130	11214130	+	Missense_Mutation	SNP	A	G	G			TCGA-J8-A3NZ-01A-11D-A21A-08	TCGA-J8-A3NZ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	862a2fcb-d576-4e6f-9a5e-fbd57fed25f0	0dbbbd24-6a84-45d4-aec5-6e394cb1c1b2	g.chr12:11214130A>G	uc001qzp.1	-	1	764	c.764T>C	c.(763-765)CTG>CCG	p.L255P	PRR4_uc009zhp.2_Intron|PRH1_uc001qzb.3_Intron|PRH1_uc001qzc.2_Intron|PRB4_uc001qzf.1_Intron|PRH1_uc001qzj.2_Intron	NM_176887	NP_795368	P59540	T2R46_HUMAN	taste receptor, type 2, member 46	255	Extracellular (Potential).				sensory perception of taste	cilium membrane|integral to membrane	G-protein coupled receptor activity			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(49;0.0344)	BRCA - Breast invasive adenocarcinoma(232;0.196)		TTTGTTTTCCAGACTCTCAAA	0.418000													6	122	---	---	---	---	0	0	0.047766	0	0
TRPV4	59341	broad.mit.edu	37	12	110232220	110232220	+	Missense_Mutation	SNP	C	T	T			TCGA-J8-A3NZ-01A-11D-A21A-08	TCGA-J8-A3NZ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	862a2fcb-d576-4e6f-9a5e-fbd57fed25f0	0dbbbd24-6a84-45d4-aec5-6e394cb1c1b2	g.chr12:110232220C>T	uc001tpj.1	-	7	1500	c.1405G>A	c.(1405-1407)GTC>ATC	p.V469I	TRPV4_uc001tpg.1_Missense_Mutation_p.V435I|TRPV4_uc001tph.1_Missense_Mutation_p.V422I|TRPV4_uc001tpi.1_Missense_Mutation_p.V362I|TRPV4_uc001tpk.1_Missense_Mutation_p.V469I|TRPV4_uc001tpl.1_Missense_Mutation_p.V409I	NM_021625	NP_067638	Q9HBA0	TRPV4_HUMAN	transient receptor potential cation channel,	469	Helical; (Potential).				actin cytoskeleton reorganization|actin filament organization|calcium ion import|cell death|cell volume homeostasis|cell-cell junction assembly|cellular hypotonic response|cortical microtubule organization|elevation of cytosolic calcium ion concentration|microtubule polymerization|negative regulation of neuron projection development|osmosensory signaling pathway|positive regulation of microtubule depolymerization|response to mechanical stimulus	cortical actin cytoskeleton|filopodium|focal adhesion|growth cone|integral to membrane|lamellipodium|ruffle membrane	actin filament binding|alpha-tubulin binding|beta-tubulin binding|calcium channel activity|calmodulin binding|microtubule binding|protein binding|protein kinase C binding|SH2 domain binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4						TAGAAGGAGACGGCCCCGAAC	0.617000													4	199	---	---	---	---	0	0	0.014758	0	0
LOC374491	374491	broad.mit.edu	37	13	25168432	25168432	+	RNA	SNP	T	C	C	rs149337771	by1000genomes	TCGA-J8-A3NZ-01A-11D-A21A-08	TCGA-J8-A3NZ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	862a2fcb-d576-4e6f-9a5e-fbd57fed25f0	0dbbbd24-6a84-45d4-aec5-6e394cb1c1b2	g.chr13:25168432T>C	uc001upm.2	+	10		c.1104T>C			LOC374491_uc001upn.2_RNA|LOC374491_uc001upo.2_RNA					Homo sapiens mRNA; cDNA DKFZp434J0717 (from clone DKFZp434J0717).												0						TTGAAACAGCTGGTGTATTAA	0.373000													3	27	---	---	---	---	0	0	0.009096	0	0
MYO5C	55930	broad.mit.edu	37	15	52529700	52529700	+	Missense_Mutation	SNP	T	A	A			TCGA-J8-A3NZ-01A-11D-A21A-08	TCGA-J8-A3NZ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	862a2fcb-d576-4e6f-9a5e-fbd57fed25f0	0dbbbd24-6a84-45d4-aec5-6e394cb1c1b2	g.chr15:52529700T>A	uc010bff.2	-	22	2984	c.2847A>T	c.(2845-2847)AGA>AGT	p.R949S	MYO5C_uc010uga.1_RNA|MYO5C_uc010ugb.1_RNA	NM_018728	NP_061198	Q9NQX4	MYO5C_HUMAN	myosin VC	949	Potential.					myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(7)|central_nervous_system(3)|large_intestine(2)|skin(2)	14				all cancers(107;0.0137)		CATCCCTGTATCTCTTCCCCT	0.512000													5	467	---	---	---	---	0	0	0.021553	0	0
ULK3	25989	broad.mit.edu	37	15	75134762	75134762	+	Splice_Site	SNP	C	G	G			TCGA-J8-A3NZ-01A-11D-A21A-08	TCGA-J8-A3NZ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	862a2fcb-d576-4e6f-9a5e-fbd57fed25f0	0dbbbd24-6a84-45d4-aec5-6e394cb1c1b2	g.chr15:75134762C>G	uc010bkf.1	-	2	209	c.103_splice	c.e2-1	p.K35_splice	ULK3_uc010ulp.1_Splice_Site|ULK3_uc010ulq.1_Splice_Site_p.K46_splice|ULK3_uc010ulr.1_Splice_Site|ULK3_uc002ayv.2_Splice_Site_p.K35_splice|ULK3_uc010uls.1_Splice_Site|ULK3_uc010ult.1_Splice_Site|ULK3_uc010ulu.1_Splice_Site	NM_001099436	NP_001092906	Q6PHR2	ULK3_HUMAN	unc-51-like kinase 3							cytoplasm	ATP binding|protein serine/threonine kinase activity			breast(2)	2						GAGTGTCCTTCTGCGAGACAG	0.557000													65	168	---	---	---	---	0	0	0.048971	0	0
LRRC36	55282	broad.mit.edu	37	16	67401213	67401213	+	Missense_Mutation	SNP	A	G	G			TCGA-J8-A3NZ-01A-11D-A21A-08	TCGA-J8-A3NZ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	862a2fcb-d576-4e6f-9a5e-fbd57fed25f0	0dbbbd24-6a84-45d4-aec5-6e394cb1c1b2	g.chr16:67401213A>G	uc002esv.2	+	8	1067	c.1048A>G	c.(1048-1050)AGG>GGG	p.R350G	LRRC36_uc002esw.2_Intron|LRRC36_uc010ceh.2_Intron|LRRC36_uc002esx.2_Missense_Mutation_p.R229G|LRRC36_uc010vjk.1_Missense_Mutation_p.R229G|LRRC36_uc010vjl.1_Intron|LRRC36_uc002esy.2_Intron	NM_018296	NP_060766	Q1X8D7	LRC36_HUMAN	leucine rich repeat containing 36 isoform 1	350											0		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0669)|Epithelial(162;0.161)		TCTTGGTAAAAGGCCTCAGAG	0.403000													3	122	---	---	---	---	0	0	0.009096	0	0
TBC1D3P2	440452	broad.mit.edu	37	17	60342339	60342339	+	RNA	SNP	A	C	C			TCGA-J8-A3NZ-01A-11D-A21A-08	TCGA-J8-A3NZ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	862a2fcb-d576-4e6f-9a5e-fbd57fed25f0	0dbbbd24-6a84-45d4-aec5-6e394cb1c1b2	g.chr17:60342339A>C	uc010woz.1	-	14		c.1790T>G				NR_027486				Homo sapiens cDNA FLJ60189 complete cds, highly similar to TBC1 domain family member 3.												0						TGTTAAGCCTAGGGAAATTAT	0.478000													4	64	---	---	---	---	0	0	0.021553	0	0
RAVER1	125950	broad.mit.edu	37	19	10431412	10431412	+	Silent	SNP	G	A	A			TCGA-J8-A3NZ-01A-11D-A21A-08	TCGA-J8-A3NZ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	862a2fcb-d576-4e6f-9a5e-fbd57fed25f0	0dbbbd24-6a84-45d4-aec5-6e394cb1c1b2	g.chr19:10431412G>A	uc002moa.2	-	9	1820	c.1740C>T	c.(1738-1740)TCC>TCT	p.S580S	RAVER1_uc002mnz.2_5'Flank	NM_133452	NP_597709	Q8IY67	RAVR1_HUMAN	RAVER1	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment						cytoplasm|nucleus	nucleotide binding|protein binding|RNA binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(20;1.81e-09)|Epithelial(33;3.65e-06)|all cancers(31;8.35e-06)			TGAGCAGGCGGGACTTGAGCT	0.697000													3	19	---	---	---	---	0	0	0.009096	0	0
BCAM	4059	broad.mit.edu	37	19	45317503	45317503	+	Silent	SNP	G	A	A			TCGA-J8-A3NZ-01A-11D-A21A-08	TCGA-J8-A3NZ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	862a2fcb-d576-4e6f-9a5e-fbd57fed25f0	0dbbbd24-6a84-45d4-aec5-6e394cb1c1b2	g.chr19:45317503G>A	uc002ozu.2	+	7	923	c.879G>A	c.(877-879)GGG>GGA	p.G293G	BCAM_uc002ozt.1_Silent_p.G293G	NM_005581	NP_005572	P50895	BCAM_HUMAN	basal cell adhesion molecule isoform 1	293	Extracellular (Potential).|Ig-like C2-type 1.				cell-matrix adhesion	integral to plasma membrane	laminin binding|laminin receptor activity			skin(1)	1	Lung NSC(12;0.000789)|all_lung(12;0.00218)	Ovarian(192;0.0728)|all_neural(266;0.112)				TCTGCCGGGGGGACGGCAGCC	0.672000													83	82	---	---	---	---	0	0	0.048971	0	0
ZNF419	79744	broad.mit.edu	37	19	58005274	58005274	+	Missense_Mutation	SNP	T	C	C			TCGA-J8-A3NZ-01A-11D-A21A-08	TCGA-J8-A3NZ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	862a2fcb-d576-4e6f-9a5e-fbd57fed25f0	0dbbbd24-6a84-45d4-aec5-6e394cb1c1b2	g.chr19:58005274T>C	uc002qov.2	+	5	1589	c.1349T>C	c.(1348-1350)ATT>ACT	p.I450T	ZNF547_uc002qpm.3_Intron|ZNF419_uc010ety.1_Missense_Mutation_p.I451T|ZNF419_uc010etz.1_Missense_Mutation_p.I438T|ZNF419_uc010eua.1_Missense_Mutation_p.I437T|ZNF419_uc002qow.2_Missense_Mutation_p.I418T|ZNF419_uc010eub.1_Missense_Mutation_p.I405T|ZNF419_uc010euc.1_Missense_Mutation_p.I404T	NM_024691	NP_078967	Q96HQ0	ZN419_HUMAN	zinc finger protein 419 isoform 2	450					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0694)|Breast(46;0.0848)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0252)|Lung(386;0.171)		AAAGTTCACATTGGAGAAAAG	0.428000													3	139	---	---	---	---	0	0	0.009096	0	0
FRG1B	284802	broad.mit.edu	37	20	29623231	29623231	+	5'Flank	SNP	C	T	T			TCGA-J8-A3NZ-01A-11D-A21A-08	TCGA-J8-A3NZ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	862a2fcb-d576-4e6f-9a5e-fbd57fed25f0	0dbbbd24-6a84-45d4-aec5-6e394cb1c1b2	g.chr20:29623231C>T	uc010ztl.1	+						FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Intron					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						GGTCTTTTTACCCTGGGAGCT	0.418000													21	390	---	---	---	---	0	0	0.076483	0	0
FRG1B	284802	broad.mit.edu	37	20	29628283	29628283	+	Silent	SNP	G	C	C			TCGA-J8-A3NZ-01A-11D-A21A-08	TCGA-J8-A3NZ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	862a2fcb-d576-4e6f-9a5e-fbd57fed25f0	0dbbbd24-6a84-45d4-aec5-6e394cb1c1b2	g.chr20:29628283G>C	uc010ztl.1	+	3	227	c.195G>C	c.(193-195)GGG>GGC	p.G65G	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Silent_p.G17G					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						ATGAAGCAGGGGACATAGAAG	0.378000													9	120	---	---	---	---	0	0	0.080935	0	0
C3orf15	89876	broad.mit.edu	37	3	119462867	119462867	+	Silent	SNP	C	T	T			TCGA-J8-A3NZ-01A-11D-A21A-08	TCGA-J8-A3NZ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	862a2fcb-d576-4e6f-9a5e-fbd57fed25f0	0dbbbd24-6a84-45d4-aec5-6e394cb1c1b2	g.chr3:119462867C>T	uc003ede.3	+	14	1803	c.1726C>T	c.(1726-1728)CTA>TTA	p.L576L	C3orf15_uc010hqz.2_Silent_p.L514L|C3orf15_uc011bjd.1_Silent_p.L450L|C3orf15_uc011bje.1_Silent_p.L556L	NM_033364	NP_203528	Q7Z4T9	AAT1_HUMAN	AAT1-alpha	412	Potential.					mitochondrion	protein binding			ovary(2)|pancreas(1)	3				GBM - Glioblastoma multiforme(114;0.186)		AGGAAGGGCACTAGCAGACAT	0.488000													54	60	---	---	---	---	0	0	0.048971	0	0
PODXL2	50512	broad.mit.edu	37	3	127379384	127379384	+	Silent	SNP	G	A	A			TCGA-J8-A3NZ-01A-11D-A21A-08	TCGA-J8-A3NZ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	862a2fcb-d576-4e6f-9a5e-fbd57fed25f0	0dbbbd24-6a84-45d4-aec5-6e394cb1c1b2	g.chr3:127379384G>A	uc003ejq.2	+	3	537	c.513G>A	c.(511-513)GAG>GAA	p.E171E		NM_015720	NP_056535	Q9NZ53	PDXL2_HUMAN	podocalyxin-like 2 precursor	171	Extracellular (Potential).|Glu-rich.				leukocyte tethering or rolling	integral to plasma membrane	glycosaminoglycan binding|protein binding			ovary(1)|central_nervous_system(1)	2						aggaagaggaggagagggaga	0.343000													3	71	---	---	---	---	0	0	0.004672	0	0
SOX14	8403	broad.mit.edu	37	3	137484265	137484265	+	Silent	SNP	G	A	A			TCGA-J8-A3NZ-01A-11D-A21A-08	TCGA-J8-A3NZ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	862a2fcb-d576-4e6f-9a5e-fbd57fed25f0	0dbbbd24-6a84-45d4-aec5-6e394cb1c1b2	g.chr3:137484265G>A	uc003erm.1	+	1	687	c.639G>A	c.(637-639)CAG>CAA	p.Q213Q		NM_004189	NP_004180	O95416	SOX14_HUMAN	SRY-box 14	213					negative regulation of transcription from RNA polymerase II promoter|nervous system development|transcription, DNA-dependent	nucleus	sequence-specific DNA binding				0						CCACCCTGCAGCCCCCCGTCG	0.657000													4	72	---	---	---	---	0	0	0.021553	0	0
BDH1	622	broad.mit.edu	37	3	197238954	197238954	+	Missense_Mutation	SNP	C	T	T	rs145598252		TCGA-J8-A3NZ-01A-11D-A21A-08	TCGA-J8-A3NZ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	862a2fcb-d576-4e6f-9a5e-fbd57fed25f0	0dbbbd24-6a84-45d4-aec5-6e394cb1c1b2	g.chr3:197238954C>T	uc003fxr.2	-	8	1246	c.844G>A	c.(844-846)GCC>ACC	p.A282T	BDH1_uc003fxs.2_Missense_Mutation_p.A282T|BDH1_uc003fxt.2_Missense_Mutation_p.A195T|BDH1_uc003fxu.2_Missense_Mutation_p.A282T	NM_203314	NP_976059	Q02338	BDH_HUMAN	3-hydroxybutyrate dehydrogenase, type 1	282					cellular lipid metabolic process|ketone body biosynthetic process|ketone body catabolic process	mitochondrial matrix	3-hydroxybutyrate dehydrogenase activity			ovary(1)	1	all_cancers(143;3.35e-10)|Ovarian(172;0.0418)|Breast(254;0.0437)	Lung NSC(153;0.118)	Epithelial(36;3.52e-24)|all cancers(36;1.79e-22)|OV - Ovarian serous cystadenocarcinoma(49;2.32e-19)|LUSC - Lung squamous cell carcinoma(58;1.02e-06)|Lung(62;1.34e-06)	GBM - Glioblastoma multiforme(93;0.0977)	NADH(DB00157)	TCCATCTTGGCGATCTTTTCA	0.582000													71	107	---	---	---	---	0	0	0.048971	0	0
PCDHB3	56132	broad.mit.edu	37	5	140482147	140482147	+	Missense_Mutation	SNP	C	G	G	rs144773246	byFrequency	TCGA-J8-A3NZ-01A-11D-A21A-08	TCGA-J8-A3NZ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	862a2fcb-d576-4e6f-9a5e-fbd57fed25f0	0dbbbd24-6a84-45d4-aec5-6e394cb1c1b2	g.chr5:140482147C>G	uc003lio.2	+	1	1914	c.1914C>G	c.(1912-1914)CAC>CAG	p.H638Q	uc003lin.2_5'Flank	NM_018937	NP_061760	Q9Y5E6	PCDB3_HUMAN	protocadherin beta 3 precursor	638	Extracellular (Potential).|Cadherin 6.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CGGCCAAGCACAGGCTGGTGG	0.697000													3	122	---	---	---	---	0	0	0.004672	0	0
KIAA1244	57221	broad.mit.edu	37	6	138584107	138584107	+	Missense_Mutation	SNP	G	A	A			TCGA-J8-A3NZ-01A-11D-A21A-08	TCGA-J8-A3NZ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	862a2fcb-d576-4e6f-9a5e-fbd57fed25f0	0dbbbd24-6a84-45d4-aec5-6e394cb1c1b2	g.chr6:138584107G>A	uc003qhu.2	+	12	1487	c.1487G>A	c.(1486-1488)GGG>GAG	p.G496E		NM_020340	NP_065073	Q5TH69	BIG3_HUMAN	brefeldin A-inhibited guanine	496					regulation of ARF protein signal transduction	cytoplasm|integral to membrane	ARF guanyl-nucleotide exchange factor activity			ovary(1)|skin(1)	2	Breast(32;0.135)			OV - Ovarian serous cystadenocarcinoma(155;0.00102)|GBM - Glioblastoma multiforme(68;0.00259)		TGGGAGTCAGGGAACGAGAGG	0.592000													3	3	---	---	---	---	0	0	0.004672	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-J8-A3NZ-01A-11D-A21A-08	TCGA-J8-A3NZ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	862a2fcb-d576-4e6f-9a5e-fbd57fed25f0	0dbbbd24-6a84-45d4-aec5-6e394cb1c1b2	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				25	45	---	---	---	---	0	0	0.045705	0	0
Unknown	0	broad.mit.edu	37	9	68413602	68413602	+	RNA	SNP	A	G	G			TCGA-J8-A3NZ-01A-11D-A21A-08	TCGA-J8-A3NZ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	862a2fcb-d576-4e6f-9a5e-fbd57fed25f0	0dbbbd24-6a84-45d4-aec5-6e394cb1c1b2	g.chr9:68413602A>G	uc004aex.2	+	1		c.157A>G								Homo sapiens mRNA; cDNA DKFZp564N0763 (from clone DKFZp564N0763).																		CCTTTTGCTGAAACTCTGGGG	0.602000													2	1	---	---	---	---	0	0	0.004672	0	0
Unknown	0	broad.mit.edu	37	MT	12730	12730	+	RNA	SNP	G	A	A			TCGA-J8-A3NZ-01A-11D-A21A-08	TCGA-J8-A3NZ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	862a2fcb-d576-4e6f-9a5e-fbd57fed25f0	0dbbbd24-6a84-45d4-aec5-6e394cb1c1b2	g.chrM:12730G>A	uc004cox.3	+	1		c.394G>A			uc004coy.2_5'Flank					Homo sapiens NADH dehydrogenase subunit 5 (MTND5) mRNA, RNA 5, complete cds; mitochondrial gene for mitochondrial product.																		TACTAATCTTAGTTACCGCTA	0.393000													9	7	---	---	---	---	0	0	0.069234	0	0
Unknown	0	broad.mit.edu	37	MT	15045	15045	+	Silent	SNP	G	A	A			TCGA-J8-A3NZ-01A-11D-A21A-08	TCGA-J8-A3NZ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	862a2fcb-d576-4e6f-9a5e-fbd57fed25f0	0dbbbd24-6a84-45d4-aec5-6e394cb1c1b2	g.chrM:15045G>A	uc004coy.2	+	1	285	c.210G>A	c.(208-210)GCG>GCA	p.A70A	uc004coz.1_5'Flank					Homo sapiens clone 35w unknown mRNA; mitochondrial.																		ACACATCGGGCGAGGCCTATA	0.473000													15	1	---	---	---	---	0	0	0.033300	0	0
ABCB7	22	broad.mit.edu	37	X	74296488	74296488	+	Missense_Mutation	SNP	G	A	A			TCGA-J8-A3NZ-01A-11D-A21A-08	TCGA-J8-A3NZ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	862a2fcb-d576-4e6f-9a5e-fbd57fed25f0	0dbbbd24-6a84-45d4-aec5-6e394cb1c1b2	g.chrX:74296488G>A	uc004eca.2	-	5	480	c.455C>T	c.(454-456)GCC>GTC	p.A152V	ABCB7_uc004ebz.2_Missense_Mutation_p.A153V|ABCB7_uc011mqn.1_Missense_Mutation_p.A126V|ABCB7_uc010nls.2_Missense_Mutation_p.A113V|ABCB7_uc010nlt.2_Missense_Mutation_p.A112V	NM_004299	NP_004290	O75027	ABCB7_HUMAN	ATP-binding cassette, sub-family B, member 7	152	ABC transmembrane type-1.|Helical; (Potential).				cellular iron ion homeostasis	integral to membrane|mitochondrial inner membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|heme transporter activity			ovary(1)	1						AATATTCATGGCCTAAAAACA	0.318000													3	35	---	---	---	---	0	0	0.004672	0	0
DCX	1641	broad.mit.edu	37	X	110654079	110654079	+	Missense_Mutation	SNP	A	C	C			TCGA-J8-A3NZ-01A-11D-A21A-08	TCGA-J8-A3NZ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	862a2fcb-d576-4e6f-9a5e-fbd57fed25f0	0dbbbd24-6a84-45d4-aec5-6e394cb1c1b2	g.chrX:110654079A>C	uc004epd.2	-	1	296	c.124T>G	c.(124-126)TCA>GCA	p.S42A	DCX_uc011msv.1_Missense_Mutation_p.S42A|DCX_uc004epe.2_Intron|DCX_uc004epf.2_Intron|DCX_uc004epg.2_Intron	NM_000555	NP_000546	O43602	DCX_HUMAN	doublecortin isoform a	42					axon guidance|central nervous system development|intracellular signal transduction	cytosol|microtubule associated complex	microtubule binding			central_nervous_system(2)|lung(1)|skin(1)	4						GTTGTAAATGAATCCATAGCC	0.423000													7	174	---	---	---	---	0	0	0.029380	0	0
ZNF185	7739	broad.mit.edu	37	X	152087589	152087589	+	Missense_Mutation	SNP	A	T	T			TCGA-J8-A3NZ-01A-11D-A21A-08	TCGA-J8-A3NZ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	862a2fcb-d576-4e6f-9a5e-fbd57fed25f0	0dbbbd24-6a84-45d4-aec5-6e394cb1c1b2	g.chrX:152087589A>T	uc010ntv.1	+	7	531	c.494A>T	c.(493-495)GAG>GTG	p.E165V	ZNF185_uc011myg.1_Missense_Mutation_p.E165V|ZNF185_uc011myh.1_Missense_Mutation_p.E165V|ZNF185_uc011myi.1_Missense_Mutation_p.E165V|ZNF185_uc011myj.1_Missense_Mutation_p.E165V|ZNF185_uc011myk.1_Missense_Mutation_p.E165V|ZNF185_uc004fgw.3_Missense_Mutation_p.E30V|ZNF185_uc004fgu.2_5'UTR|ZNF185_uc004fgv.2_5'Flank	NM_007150	NP_009081	O15231	ZN185_HUMAN	zinc finger protein 185	165	Poly-Glu.					cytoplasm|cytoskeleton|focal adhesion	zinc ion binding			ovary(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					gaggaggaggaggTGGTGCCA	0.507000													3	49	---	---	---	---	0	0	0.009096	0	0
Unknown	0	broad.mit.edu	37	1	2796663	2796663	+	IGR	DEL	G	-	-	rs4648408	by1000genomes	TCGA-J8-A3NZ-01A-11D-A21A-08	TCGA-J8-A3NZ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	862a2fcb-d576-4e6f-9a5e-fbd57fed25f0	0dbbbd24-6a84-45d4-aec5-6e394cb1c1b2	g.chr1:2796663delG								MMEL1 (232182 upstream) : ACTRT2 (141383 downstream)																							TGCTGTGCCCGGGGGGGCTTC	0.642													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	31421991	31421992	+	IGR	DEL	CC	-	-			TCGA-J8-A3NZ-01A-11D-A21A-08	TCGA-J8-A3NZ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	862a2fcb-d576-4e6f-9a5e-fbd57fed25f0	0dbbbd24-6a84-45d4-aec5-6e394cb1c1b2	g.chr10:31421991_31421992delCC								ZNF438 (101125 upstream) : LOC220930 (183466 downstream)																							TCCCTCCCTTCCTCCCTCCCCA	0.604													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	135524666	135524667	+	IGR	INS	-	G	G			TCGA-J8-A3NZ-01A-11D-A21A-08	TCGA-J8-A3NZ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	862a2fcb-d576-4e6f-9a5e-fbd57fed25f0	0dbbbd24-6a84-45d4-aec5-6e394cb1c1b2	g.chr10:135524666_135524667insG								LOC653544 (29473 upstream) : None (None downstream)																							ggtgagggttagggtgagggtt	0.000													2	4	---	---	---	---					
FNBP4	23360	broad.mit.edu	37	11	47788664	47788669	+	In_Frame_Del	DEL	GGTGGT	-	-	rs59413596		TCGA-J8-A3NZ-01A-11D-A21A-08	TCGA-J8-A3NZ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	862a2fcb-d576-4e6f-9a5e-fbd57fed25f0	0dbbbd24-6a84-45d4-aec5-6e394cb1c1b2	g.chr11:47788664_47788669delGGTGGT	uc009ylv.2	-	1	325_330	c.172_177delACCACC	c.(172-177)ACCACCdel	p.TT58del	FNBP4_uc001ngj.2_5'UTR|FNBP4_uc001ngl.2_RNA	NM_015308	NP_056123	Q8N3X1	FNBP4_HUMAN	formin binding protein 4	58_59										ovary(1)	1						CAGTCACCGCGGTGGTGGTGGTCGTC	0.748													6	13	---	---	---	---					
MMP12	4321	broad.mit.edu	37	11	102738793	102738794	+	Splice_Site	INS	-	T	T	rs139197361	by1000genomes	TCGA-J8-A3NZ-01A-11D-A21A-08	TCGA-J8-A3NZ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	862a2fcb-d576-4e6f-9a5e-fbd57fed25f0	0dbbbd24-6a84-45d4-aec5-6e394cb1c1b2	g.chr11:102738793_102738794insT	uc001phk.2	-	5	675	c.630_splice	c.e5+1	p.T210_splice		NM_002426	NP_002417	P39900	MMP12_HUMAN	matrix metalloproteinase 12 preproprotein						positive regulation of epithelial cell proliferation involved in wound healing|proteolysis|wound healing, spreading of epidermal cells	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding				0		all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)		BRCA - Breast invasive adenocarcinoma(274;0.014)	Acetohydroxamic Acid(DB00551)	TGAGGAACAAGTGGTGCCTAAG	0.416													7	11	---	---	---	---					
Unknown	0	broad.mit.edu	37	12	3181349	3181350	+	IGR	INS	-	T	T			TCGA-J8-A3NZ-01A-11D-A21A-08	TCGA-J8-A3NZ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	862a2fcb-d576-4e6f-9a5e-fbd57fed25f0	0dbbbd24-6a84-45d4-aec5-6e394cb1c1b2	g.chr12:3181349_3181350insT								TEAD4 (31508 upstream) : TSPAN9 (5207 downstream)																							TTtttttttccttttttttttt	0.317													4	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	13	107500986	107500987	+	IGR	INS	-	C	C			TCGA-J8-A3NZ-01A-11D-A21A-08	TCGA-J8-A3NZ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	862a2fcb-d576-4e6f-9a5e-fbd57fed25f0	0dbbbd24-6a84-45d4-aec5-6e394cb1c1b2	g.chr13:107500986_107500987insC								ARGLU1 (280472 upstream) : FAM155A (319893 downstream)																							GAcgccccccgccccgcccccc	0.282													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	15	57616444	57616460	+	IGR	DEL	TTGTGTCCCTCCTCCCC	-	-			TCGA-J8-A3NZ-01A-11D-A21A-08	TCGA-J8-A3NZ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	862a2fcb-d576-4e6f-9a5e-fbd57fed25f0	0dbbbd24-6a84-45d4-aec5-6e394cb1c1b2	g.chr15:57616444_57616460delTTGTGTCCCTCCTCCCC								LOC283663 (16479 upstream) : CGNL1 (52245 downstream)																							cctccccctattgtgtccctcctccccttgtgtccct	0.018													8	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	80078799	80078800	+	IGR	INS	-	G	G	rs67057683		TCGA-J8-A3NZ-01A-11D-A21A-08	TCGA-J8-A3NZ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	862a2fcb-d576-4e6f-9a5e-fbd57fed25f0	0dbbbd24-6a84-45d4-aec5-6e394cb1c1b2	g.chr16:80078799_80078800insG								MAF (444177 upstream) : DYNLRB2 (496054 downstream)																							AGCTAGGGGATGGGGGGGGGGG	0.554													5	1	---	---	---	---					
HAP1	9001	broad.mit.edu	37	17	39888235	39888237	+	In_Frame_Del	DEL	CTT	-	-	rs150945451	byFrequency	TCGA-J8-A3NZ-01A-11D-A21A-08	TCGA-J8-A3NZ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	862a2fcb-d576-4e6f-9a5e-fbd57fed25f0	0dbbbd24-6a84-45d4-aec5-6e394cb1c1b2	g.chr17:39888235_39888237delCTT	uc002hxm.1	-	4	860_862	c.848_850delAAG	c.(847-852)GAAGCA>GCA	p.E283del	JUP_uc010wfs.1_Intron|HAP1_uc002hxn.1_In_Frame_Del_p.E283del|HAP1_uc002hxo.1_In_Frame_Del_p.E291del|HAP1_uc002hxp.1_In_Frame_Del_p.E283del	NM_177977	NP_817084	P54257	HAP1_HUMAN	huntingtin-associated protein 1 isoform 2	283	Glu-rich.|HAP1 N-terminal.				brain development|protein localization|synaptic transmission	actin cytoskeleton	protein binding			ovary(2)	2		Breast(137;0.000162)	BRCA - Breast invasive adenocarcinoma(4;0.0677)			tcttcctctgcttcttcttcttc	0.079													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	72562152	72562154	+	IGR	DEL	GGA	-	-	rs56277374		TCGA-J8-A3NZ-01A-11D-A21A-08	TCGA-J8-A3NZ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	862a2fcb-d576-4e6f-9a5e-fbd57fed25f0	0dbbbd24-6a84-45d4-aec5-6e394cb1c1b2	g.chr17:72562152_72562154delGGA								CD300C (19870 upstream) : CD300LD (13957 downstream)																							aggggggcggggagggggcgggg	0.212													3	6	---	---	---	---					
HAUS8	93323	broad.mit.edu	37	19	17160706	17160707	+	Frame_Shift_Del	DEL	GA	-	-			TCGA-J8-A3NZ-01A-11D-A21A-08	TCGA-J8-A3NZ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	862a2fcb-d576-4e6f-9a5e-fbd57fed25f0	0dbbbd24-6a84-45d4-aec5-6e394cb1c1b2	g.chr19:17160706_17160707delGA	uc002nfe.2	-	11	1320_1321	c.1209_1210delTC	c.(1207-1212)TCTCGTfs	p.S403fs	HAUS8_uc002nff.2_Frame_Shift_Del_p.S402fs|HAUS8_uc002nfg.1_Frame_Shift_Del_p.S341fs|HAUS8_uc002nfh.1_Frame_Shift_Del_p.S402fs	NM_033417	NP_219485	Q9BT25	HAUS8_HUMAN	sarcoma antigen NY-SAR-48 isoform a	403_404					cell division|centrosome organization|mitosis|spindle assembly	centrosome|HAUS complex|microtubule|spindle pole					0						CTCCCTGAACGAGAGAGAGAGG	0.495													8	394	---	---	---	---					
WDR62	284403	broad.mit.edu	37	19	36583666	36583668	+	In_Frame_Del	DEL	GCA	-	-			TCGA-J8-A3NZ-01A-11D-A21A-08	TCGA-J8-A3NZ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	862a2fcb-d576-4e6f-9a5e-fbd57fed25f0	0dbbbd24-6a84-45d4-aec5-6e394cb1c1b2	g.chr19:36583666_36583668delGCA	uc002odc.2	+	19	2377_2379	c.2286_2288delGCA	c.(2284-2289)CGGCAG>CGG	p.Q766del	WDR62_uc002odd.2_In_Frame_Del_p.Q766del	NM_173636	NP_775907	O43379	WDR62_HUMAN	WD repeat domain 62 isoform 2	766					cerebral cortex development	nucleus					0	Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.06)			TTGACCACCGGCAGCAGCAGCAG	0.567													7	300	---	---	---	---					
ANKRD44	91526	broad.mit.edu	37	2	197943383	197943384	+	Frame_Shift_Del	DEL	TG	-	-			TCGA-J8-A3NZ-01A-11D-A21A-08	TCGA-J8-A3NZ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	862a2fcb-d576-4e6f-9a5e-fbd57fed25f0	0dbbbd24-6a84-45d4-aec5-6e394cb1c1b2	g.chr2:197943383_197943384delTG	uc002uub.2	-	16	1860_1861	c.1693_1694delCA	c.(1693-1695)CATfs	p.H565fs	ANKRD44_uc002utz.3_Intron|ANKRD44_uc002uua.1_Intron|ANKRD44_uc010zgw.1_Frame_Shift_Del_p.H493fs	NM_153697	NP_710181	Q8N8A2	ANR44_HUMAN	ankyrin repeat domain 44	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							protein binding			ovary(4)|skin(1)	5			OV - Ovarian serous cystadenocarcinoma(117;0.246)			ATTTGGGGTATGTGTGTGTGTG	0.342													5	7	---	---	---	---					
AP1S3	130340	broad.mit.edu	37	2	224702456	224702458	+	5'Flank	DEL	CTC	-	-			TCGA-J8-A3NZ-01A-11D-A21A-08	TCGA-J8-A3NZ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	862a2fcb-d576-4e6f-9a5e-fbd57fed25f0	0dbbbd24-6a84-45d4-aec5-6e394cb1c1b2	g.chr2:224702456_224702458delCTC	uc010fwx.1	-						AP1S3_uc002vnn.2_5'Flank|AP1S3_uc010fww.2_5'Flank|AP1S3_uc002vno.2_5'Flank	NM_001039569	NP_001034658	Q96PC3	AP1S3_HUMAN	adaptor-related protein complex 1, sigma 3						endocytosis|intracellular protein transport|post-Golgi vesicle-mediated transport|regulation of defense response to virus by virus|viral reproduction	coated pit|cytoplasmic vesicle membrane|cytosol|Golgi membrane|lysosomal membrane|membrane coat	protein transporter activity				0		Renal(207;0.0112)|Lung NSC(271;0.0186)|all_lung(227;0.0272)		Epithelial(121;7.6e-10)|all cancers(144;3.62e-07)|Lung(261;0.0086)|LUSC - Lung squamous cell carcinoma(224;0.00902)		ctcctcccttctcctcctcctcc	0.409													4	9	---	---	---	---					
Unknown	0	broad.mit.edu	37	22	44718227	44718227	+	IGR	DEL	A	-	-			TCGA-J8-A3NZ-01A-11D-A21A-08	TCGA-J8-A3NZ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	862a2fcb-d576-4e6f-9a5e-fbd57fed25f0	0dbbbd24-6a84-45d4-aec5-6e394cb1c1b2	g.chr22:44718227delA								KIAA1644 (9496 upstream) : LDOC1L (170223 downstream)																							TCTGCCCATGAGTTGGAGGTG	0.627													5	2	---	---	---	---					
Unknown	0	broad.mit.edu	37	3	99916572	99916572	+	IGR	DEL	A	-	-			TCGA-J8-A3NZ-01A-11D-A21A-08	TCGA-J8-A3NZ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	862a2fcb-d576-4e6f-9a5e-fbd57fed25f0	0dbbbd24-6a84-45d4-aec5-6e394cb1c1b2	g.chr3:99916572delA								TMEM30C (3546 upstream) : TBC1D23 (63114 downstream)																							ctaactacctactctaacaGA	0.010													2	4	---	---	---	---					
OTOP1	133060	broad.mit.edu	37	4	4228274	4228282	+	In_Frame_Del	DEL	CCACAGCAG	-	-	rs111245977		TCGA-J8-A3NZ-01A-11D-A21A-08	TCGA-J8-A3NZ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	862a2fcb-d576-4e6f-9a5e-fbd57fed25f0	0dbbbd24-6a84-45d4-aec5-6e394cb1c1b2	g.chr4:4228274_4228282delCCACAGCAG	uc003ghp.1	-	1	340_348	c.310_318delCTGCTGTGG	c.(310-318)CTGCTGTGGdel	p.LLW104del		NM_177998	NP_819056	Q7RTM1	OTOP1_HUMAN	otopetrin 1	104_106	Helical; (Potential).				biomineral tissue development	extracellular space|integral to membrane				ovary(2)|central_nervous_system(1)	3				UCEC - Uterine corpus endometrioid carcinoma (64;0.168)		ACCACAGCATCCACAGCAGCTGCAGCAGC	0.727													8	59	---	---	---	---					
DDX60L	91351	broad.mit.edu	37	4	169325133	169325133	+	Frame_Shift_Del	DEL	A	-	-			TCGA-J8-A3NZ-01A-11D-A21A-08	TCGA-J8-A3NZ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	862a2fcb-d576-4e6f-9a5e-fbd57fed25f0	0dbbbd24-6a84-45d4-aec5-6e394cb1c1b2	g.chr4:169325133delA	uc003irq.3	-	25	3559	c.3338delT	c.(3337-3339)TTGfs	p.L1113fs	DDX60L_uc003irr.1_Frame_Shift_Del_p.L1113fs|DDX60L_uc003irs.1_Frame_Shift_Del_p.L808fs	NM_001012967	NP_001012985	Q5H9U9	DDX6L_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like	1113							ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)	1		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.175)		AGTTACTTACAAAAAAAATAT	0.274													2	4	---	---	---	---					
SLC12A7	10723	broad.mit.edu	37	5	1078124	1078125	+	Splice_Site	INS	-	GCAG	GCAG			TCGA-J8-A3NZ-01A-11D-A21A-08	TCGA-J8-A3NZ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	862a2fcb-d576-4e6f-9a5e-fbd57fed25f0	0dbbbd24-6a84-45d4-aec5-6e394cb1c1b2	g.chr5:1078124_1078125insGCAG	uc003jbu.2	-	12	1521	c.1455_splice	c.e12-1	p.K485_splice		NM_006598	NP_006589	Q9Y666	S12A7_HUMAN	solute carrier family 12 (potassium/chloride						potassium ion transport|sodium ion transport	integral to plasma membrane	potassium:chloride symporter activity			skin(2)|large_intestine(1)|ovary(1)	4	Lung NSC(6;2.47e-13)|all_lung(6;1.67e-12)|all_epithelial(6;5.44e-09)		Epithelial(17;0.000497)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|all cancers(22;0.00241)|Lung(60;0.165)		Potassium Chloride(DB00761)	TCCCCGAACCTgcaggcaggcg	0.550													9	10	---	---	---	---					
Unknown	0	broad.mit.edu	37	5	65172954	65172956	+	IGR	DEL	CTC	-	-			TCGA-J8-A3NZ-01A-11D-A21A-08	TCGA-J8-A3NZ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	862a2fcb-d576-4e6f-9a5e-fbd57fed25f0	0dbbbd24-6a84-45d4-aec5-6e394cb1c1b2	g.chr5:65172954_65172956delCTC								NLN (53567 upstream) : ERBB2IP (49428 downstream)																							TCGTCGTCATctcctcctcctcc	0.025													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	5	178802928	178802929	+	IGR	INS	-	A	A			TCGA-J8-A3NZ-01A-11D-A21A-08	TCGA-J8-A3NZ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	862a2fcb-d576-4e6f-9a5e-fbd57fed25f0	0dbbbd24-6a84-45d4-aec5-6e394cb1c1b2	g.chr5:178802928_178802929insA								ADAMTS2 (30599 upstream) : RUFY1 (174642 downstream)																							ggggaagggggaagagtccaac	0.129													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	70352929	70352930	+	IGR	DEL	AG	-	-			TCGA-J8-A3NZ-01A-11D-A21A-08	TCGA-J8-A3NZ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	862a2fcb-d576-4e6f-9a5e-fbd57fed25f0	0dbbbd24-6a84-45d4-aec5-6e394cb1c1b2	g.chr7:70352929_70352930delAG								AUTS2 (95045 upstream) : WBSCR17 (244859 downstream)																							GGGgtggggaagagagagagaa	0.064													4	7	---	---	---	---					
ATXN7L1	222255	broad.mit.edu	37	7	105254802	105254804	+	In_Frame_Del	DEL	GAG	-	-			TCGA-J8-A3NZ-01A-11D-A21A-08	TCGA-J8-A3NZ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	862a2fcb-d576-4e6f-9a5e-fbd57fed25f0	0dbbbd24-6a84-45d4-aec5-6e394cb1c1b2	g.chr7:105254802_105254804delGAG	uc003vde.2	-	10	2004_2006	c.1977_1979delCTC	c.(1975-1980)TCCTCT>TCT	p.659_660SS>S	ATXN7L1_uc003vdf.2_In_Frame_Del_p.535_536SS>S|ATXN7L1_uc003vdg.3_In_Frame_Del_p.319_320SS>S|ATXN7L1_uc003vdh.3_In_Frame_Del_p.443_444SS>S	NM_020725	NP_065776	Q9ULK2	AT7L1_HUMAN	ataxin 7-like 1 isoform 1	659_660	Ser-rich.										0						CTGCAaggaagaggaggaggagg	0.424													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	126899535	126899535	+	IGR	DEL	A	-	-			TCGA-J8-A3NZ-01A-11D-A21A-08	TCGA-J8-A3NZ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	862a2fcb-d576-4e6f-9a5e-fbd57fed25f0	0dbbbd24-6a84-45d4-aec5-6e394cb1c1b2	g.chr7:126899535delA								GRM8 (6388 upstream) : ZNF800 (110819 downstream)																							cactgccaccaccaccatcac	0.000													3	3	---	---	---	---					
MIR1277	100302214	broad.mit.edu	37	X	117520366	117520367	+	RNA	DEL	AT	-	-			TCGA-J8-A3NZ-01A-11D-A21A-08	TCGA-J8-A3NZ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	862a2fcb-d576-4e6f-9a5e-fbd57fed25f0	0dbbbd24-6a84-45d4-aec5-6e394cb1c1b2	g.chrX:117520366_117520367delAT	hsa-mir-1277|MI0006419	+			c.10_11delAT			WDR44_uc004eqn.2_Intron|WDR44_uc004eqo.2_Intron|WDR44_uc011mtr.1_Intron																	0						AACCTCCCAAatatatatatat	0.203													7	46	---	---	---	---					
CD99L2	83692	broad.mit.edu	37	X	149937526	149937528	+	In_Frame_Del	DEL	GGC	-	-	rs7877654	byFrequency	TCGA-J8-A3NZ-01A-11D-A21A-08	TCGA-J8-A3NZ-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	862a2fcb-d576-4e6f-9a5e-fbd57fed25f0	0dbbbd24-6a84-45d4-aec5-6e394cb1c1b2	g.chrX:149937526_149937528delGGC	uc004fel.2	-	11	886_888	c.768_770delGCC	c.(766-771)CCGCCC>CCC	p.256_257PP>P	CD99L2_uc004fek.2_RNA|CD99L2_uc004fem.2_In_Frame_Del_p.207_208PP>P|CD99L2_uc004fen.2_In_Frame_Del_p.184_185PP>P|CD99L2_uc004feo.2_RNA|CD99L2_uc011myb.1_In_Frame_Del_p.183_184PP>P	NM_031462	NP_113650	Q8TCZ2	C99L2_HUMAN	CD99 antigen-like 2 isoform E3'-E4'-E3-E4	256_257	Cytoplasmic (Potential).|Poly-Pro.				cell adhesion	cell junction|integral to membrane				large_intestine(2)|ovary(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					GGCTGGTTCGGGCGGCGGCGGCG	0.611													8	453	---	---	---	---					
