Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	isArtifactMode	oxoGCut
RLF	6018	broad.mit.edu	37	1	40668129	40668129	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr1:40668129G>A	uc001cfc.3	+	5	684	c.653G>A	c.(652-654)CGA>CAA	p.R218Q		NM_012421	NP_036553	Q13129	RLF_HUMAN	rearranged L-myc fusion	218					chromosome organization|DNA integration|DNA mediated transformation|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			ovary(2)|pancreas(1)	3	Lung NSC(20;4.38e-06)|Ovarian(52;0.00167)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;5.87e-19)|Epithelial(16;7.02e-16)|all cancers(16;1.69e-14)|Lung(16;0.0427)|LUSC - Lung squamous cell carcinoma(16;0.0461)			CTGCAAATGCGAATAAAACAT	0.333													21	88					0	0	0	0
MSH4	4438	broad.mit.edu	37	1	76378560	76378560	+	Missense_Mutation	SNP	G	T	T			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr1:76378560G>T	uc001dhd.1	+	20	2840	c.2799G>T	c.(2797-2799)AAG>AAT	p.K933N		NM_002440	NP_002431	O15457	MSH4_HUMAN	mutS homolog 4	933					chiasma assembly|homologous chromosome segregation|mismatch repair|reciprocal meiotic recombination	synaptonemal complex	ATP binding|DNA-dependent ATPase activity|mismatched DNA binding			lung(3)|ovary(2)	5						TTCCAGAAAAGACTGAAGAAT	0.303								MMR					9	38					1.33987e-11	1.62699e-11	1	0
GBP7	388646	broad.mit.edu	37	1	89618020	89618020	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr1:89618020C>T	uc001dna.2	-	5	695	c.556G>A	c.(556-558)GAG>AAG	p.E186K	GBP2_uc001dmy.1_5'Flank	NM_207398	NP_997281	Q8N8V2	GBP7_HUMAN	guanylate binding protein 4-like	186						integral to membrane	GTP binding|GTPase activity			ovary(1)|skin(1)	2		Lung NSC(277;0.0908)		all cancers(265;0.00835)|Epithelial(280;0.0322)		AACTTCAGCTCCAGGGTAAAA	0.478													6	227					0	0	0	0
C1orf103	55791	broad.mit.edu	37	1	111495337	111495337	+	Missense_Mutation	SNP	G	C	C			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr1:111495337G>C	uc001eaa.2	-	2	425	c.169C>G	c.(169-171)CCA>GCA	p.P57A	C1orf103_uc001dzz.2_5'UTR|C1orf103_uc001eab.2_Intron|C1orf103_uc001eac.1_Intron	NM_018372	NP_060842	Q5T3J3	LRIF1_HUMAN	receptor-interacting factor 1 isoform 1	57					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear matrix	protein binding				0		all_cancers(81;1.02e-05)|all_epithelial(167;1.87e-05)|all_lung(203;0.000234)|Lung NSC(277;0.000451)		Lung(183;0.0155)|Colorectal(144;0.0314)|all cancers(265;0.082)|LUSC - Lung squamous cell carcinoma(189;0.0826)|Epithelial(280;0.0891)|COAD - Colon adenocarcinoma(174;0.134)		TGAACTAGTGGTATAAGATTT	0.398													22	99					0	0	0	0
NOTCH2	4853	broad.mit.edu	37	1	120510064	120510064	+	Missense_Mutation	SNP	C	G	G			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr1:120510064C>G	uc001eik.2	-	8	1701	c.1445G>C	c.(1444-1446)TGC>TCC	p.C482S	NOTCH2_uc001eil.2_Missense_Mutation_p.C482S|NOTCH2_uc001eim.3_Missense_Mutation_p.C399S	NM_024408	NP_077719	Q04721	NOTC2_HUMAN	notch 2 preproprotein	482	Extracellular (Potential).|EGF-like 12; calcium-binding (Potential).				anti-apoptosis|bone remodeling|cell cycle arrest|cell fate determination|cell growth|hemopoiesis|induction of apoptosis|negative regulation of cell proliferation|nervous system development|Notch receptor processing|Notch signaling pathway|organ morphogenesis|positive regulation of Ras protein signal transduction|regulation of transcription, DNA-dependent|stem cell maintenance|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|ligand-regulated transcription factor activity|protein binding|receptor activity			lung(8)|haematopoietic_and_lymphoid_tissue(7)|ovary(4)|central_nervous_system(2)|skin(2)|kidney(2)|breast(1)|prostate(1)	27	all_neural(166;0.153)	all_lung(203;1.96e-06)|Lung NSC(69;1.47e-05)|all_epithelial(167;0.000809)		Lung(183;0.0242)|LUSC - Lung squamous cell carcinoma(189;0.133)		ACCTGGCATGCACAGACATGT	0.488			N|F|Mis		marginal zone lymphoma|DLBCL				Alagille_Syndrome				85	247					0	0	0	0
PSMD4	5710	broad.mit.edu	37	1	151238835	151238835	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr1:151238835G>A	uc001exl.2	+	8	877	c.815G>A	c.(814-816)CGC>CAC	p.R272H	PSMD4_uc001exn.2_Missense_Mutation_p.R275H	NM_002810	NP_002801	P55036	PSMD4_HUMAN	proteasome 26S non-ATPase subunit 4	272					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA repair|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|regulation of transcription, DNA-dependent|S phase of mitotic cell cycle|viral reproduction	proteasome complex	protein binding|zinc ion binding				0	Lung SC(34;0.00471)|Ovarian(49;0.0147)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.112)|LUSC - Lung squamous cell carcinoma(543;0.181)			GAGTTTGGCCGCACTGGGCTT	0.547													5	228					0	0	0	0
ZNF687	57592	broad.mit.edu	37	1	151260750	151260750	+	Silent	SNP	G	A	A			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr1:151260750G>A	uc001exq.2	+	2	2081	c.1983G>A	c.(1981-1983)CCG>CCA	p.P661P	ZNF687_uc001exp.1_Silent_p.P670P|ZNF687_uc009wmo.2_Silent_p.P661P|ZNF687_uc009wmp.2_Silent_p.P661P	NM_020832	NP_065883	Q8N1G0	ZN687_HUMAN	zinc finger protein 687	661					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus	DNA binding|zinc ion binding			central_nervous_system(3)|ovary(1)	4	Lung SC(34;0.00471)|Ovarian(49;0.0147)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.112)|LUSC - Lung squamous cell carcinoma(543;0.181)			CCACAGAGCCGCCTGCTGCCC	0.637													18	54					0	0	0	0
RC3H1	149041	broad.mit.edu	37	1	173934116	173934116	+	Missense_Mutation	SNP	G	T	T			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr1:173934116G>T	uc001gju.3	-	9	1564	c.1477C>A	c.(1477-1479)CTG>ATG	p.L493M	RC3H1_uc010pms.1_Missense_Mutation_p.L493M|RC3H1_uc001gjv.2_Missense_Mutation_p.L493M|RC3H1_uc010pmt.1_Missense_Mutation_p.L493M	NM_172071	NP_742068	Q5TC82	RC3H1_HUMAN	roquin	493					cytoplasmic mRNA processing body assembly|negative regulation of activated T cell proliferation|negative regulation of B cell proliferation|negative regulation of germinal center formation|negative regulation of T-helper cell differentiation|nuclear-transcribed mRNA catabolic process|regulation of mRNA stability|regulation of T cell receptor signaling pathway	cytoplasmic mRNA processing body|stress granule	mRNA 3'-UTR binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(2)	2						CCATTTGGCAGAGCAGGAGGT	0.483													59	150					2.79145e-41	3.65036e-41	1	0
DHX9	1660	broad.mit.edu	37	1	182827949	182827949	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr1:182827949G>A	uc001gpr.2	+	10	1145	c.982G>A	c.(982-984)GGT>AGT	p.G328S	DHX9_uc001gps.2_Missense_Mutation_p.G114S	NM_001357	NP_001348	Q08211	DHX9_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 9	328					CRD-mediated mRNA stabilization|nuclear mRNA splicing, via spliceosome	centrosome|CRD-mediated mRNA stability complex|nucleolus|nucleoplasm|ribonucleoprotein complex	ATP binding|ATP-dependent DNA helicase activity|ATP-dependent RNA helicase activity|DNA binding|double-stranded RNA binding|protein binding			ovary(2)	2						AAACCAAGTGGGTGTGGTTCC	0.438													48	127					0	0	0	0
OBSCN	84033	broad.mit.edu	37	1	228480267	228480267	+	Silent	SNP	C	T	T			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr1:228480267C>T	uc009xez.1	+	40	10691	c.10647C>T	c.(10645-10647)GCC>GCT	p.A3549A	OBSCN_uc001hsn.2_Silent_p.A3549A|OBSCN_uc001hsq.1_Silent_p.A805A	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	3549	Ig-like 36.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				ACCAGGAGGCCAGAGAAGGGG	0.552													4	216					0	0	0	0
Unknown	0	broad.mit.edu	37	1	237167512	237167512	+	RNA	SNP	G	A	A			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr1:237167512G>A	uc001hyk.1	-	1		c.207C>T								Homo sapiens metallothionein 1H-like protein mRNA, complete cds.																		GCACTTTTCCGAAGCCCCTTT	0.547													15	51					0	0	0	0
AGAP5	729092	broad.mit.edu	37	10	75434549	75434549	+	Missense_Mutation	SNP	G	C	C			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr10:75434549G>C	uc009xri.2	-	8	1910	c.1869C>G	c.(1867-1869)GAC>GAG	p.D623E	AGAP5_uc001juu.3_Missense_Mutation_p.D584E	NM_001144000	NP_001137472	A6NIR3	AGAP5_HUMAN	ArfGAP with GTPase domain, ankyrin repeat and PH	623	ANK 1.				regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding				0						CCGTGCAGCCGTCTCCCTCCC	0.662													38	223					0	0	0	0
GBF1	8729	broad.mit.edu	37	10	104118286	104118286	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr10:104118286C>T	uc001kux.1	+	10	1051	c.811C>T	c.(811-813)CCC>TCC	p.P271S	GBF1_uc001kuw.2_Missense_Mutation_p.P271S|GBF1_uc001kuy.1_Missense_Mutation_p.P271S|GBF1_uc001kuz.1_Missense_Mutation_p.P271S	NM_004193	NP_004184	Q92538	GBF1_HUMAN	golgi-specific brefeldin A resistant guanine	271					COPI coating of Golgi vesicle|post-Golgi vesicle-mediated transport|regulation of ARF protein signal transduction|retrograde vesicle-mediated transport, Golgi to ER	Golgi membrane	ARF guanyl-nucleotide exchange factor activity|protein binding			ovary(1)|central_nervous_system(1)	2		Colorectal(252;0.0236)		Epithelial(162;5.16e-08)|all cancers(201;1.19e-06)		CATTGATGTGCCCACTCCCAT	0.517													4	145					0	0	0	0
TMEM80	283232	broad.mit.edu	37	11	703061	703061	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr11:703061G>A	uc001lqr.2	+	5	555	c.418G>A	c.(418-420)GCG>ACG	p.A140T	TMEM80_uc001lqs.2_Missense_Mutation_p.A132T|TMEM80_uc010qwi.1_Missense_Mutation_p.A140T	NM_001042463	NP_001035928	Q96HE8	TMM80_HUMAN	transmembrane protein 80 isoform 2	140	Helical; (Potential).					integral to membrane					0		all_cancers(49;5.11e-06)|all_epithelial(84;0.00143)|Breast(177;0.00234)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;3.44e-27)|Epithelial(43;2.29e-26)|OV - Ovarian serous cystadenocarcinoma(40;1.19e-20)|BRCA - Breast invasive adenocarcinoma(625;4.23e-05)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)		AGTGTTGTGGGCGGACTGGGC	0.697													30	61					0	0	0	0
TRAF6	7189	broad.mit.edu	37	11	36511809	36511809	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr11:36511809C>T	uc001mwr.1	-	8	1488	c.1148G>A	c.(1147-1149)GGC>GAC	p.G383D	uc001mwq.1_5'Flank|TRAF6_uc001mws.1_Missense_Mutation_p.G383D	NM_145803	NP_665802	Q9Y4K3	TRAF6_HUMAN	TNF receptor-associated factor 6	383	MATH.				activation of MAPK activity|activation of NF-kappaB-inducing kinase activity|anti-apoptosis|apoptosis|induction of apoptosis by extracellular signals|innate immune response|JNK cascade|membrane protein intracellular domain proteolysis|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of transcription from RNA polymerase II promoter|nerve growth factor receptor signaling pathway|ossification|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-2 production|positive regulation of JUN kinase activity|positive regulation of NF-kappaB transcription factor activity|positive regulation of osteoclast differentiation|positive regulation of T cell cytokine production|protein autoubiquitination|protein K63-linked ubiquitination|response to interleukin-1|stress-activated MAPK cascade|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	CD40 receptor complex|cell cortex|cytosol|endosome membrane|internal side of plasma membrane|nuclear membrane	histone deacetylase binding|mitogen-activated protein kinase kinase kinase binding|protein kinase B binding|protein N-terminus binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)	1	all_lung(20;0.211)	all_hematologic(20;0.107)				CCCGGGTTTGCCAGTGTAGAA	0.433													4	277					0	0	0	0
OR5M10	390167	broad.mit.edu	37	11	56345153	56345153	+	Silent	SNP	T	C	C			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr11:56345153T>C	uc001niz.1	-	1	45	c.45A>G	c.(43-45)TTA>TTG	p.L15L		NM_001004741	NP_001004741	Q6IEU7	OR5MA_HUMAN	olfactory receptor, family 5, subfamily M,	15	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CTGTCAGTCCTAAGAGAATGA	0.458													7	149					0	0	0	0
OR5M1	390168	broad.mit.edu	37	11	56380883	56380883	+	Silent	SNP	A	C	C			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr11:56380883A>C	uc001nja.1	-	1	96	c.96T>G	c.(94-96)CTT>CTG	p.L32L		NM_001004740	NP_001004740	Q8NGP8	OR5M1_HUMAN	olfactory receptor, family 5, subfamily M,	32	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1						GGTAGATCGCAAGGAATACCC	0.493													10	124					0	0	0	0
OR5M1	390168	broad.mit.edu	37	11	56380889	56380889	+	Silent	SNP	T	C	C			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr11:56380889T>C	uc001nja.1	-	1	90	c.90A>G	c.(88-90)GTA>GTG	p.V30V		NM_001004740	NP_001004740	Q8NGP8	OR5M1_HUMAN	olfactory receptor, family 5, subfamily M,	30	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1						TCGCAAGGAATACCCCAAACA	0.478													13	127					0	0	0	0
TMEM179B	374395	broad.mit.edu	37	11	62557444	62557444	+	Silent	SNP	G	A	A			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr11:62557444G>A	uc001nvd.3	+	5	615	c.585G>A	c.(583-585)CGG>CGA	p.R195R		NM_199337	NP_955369	Q7Z7N9	T179B_HUMAN	transmembrane protein 179B	195						integral to membrane					0						CCCCATACCGGCCTCTGGAGA	0.557													75	232					0	0	0	0
FOLH1B	219595	broad.mit.edu	37	11	89413808	89413808	+	Silent	SNP	A	G	G			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr11:89413808A>G	uc001pda.2	+	8	1006	c.480A>G	c.(478-480)CCA>CCG	p.P160P		NM_153696	NP_710163	Q9HBA9	FOH1B_HUMAN	folate hydrolase 1B	160					proteolysis	cytoplasm	dipeptidase activity|metal ion binding|metallopeptidase activity			ovary(3)|skin(2)|central_nervous_system(1)	6						ATTGTACACCACTGATGTACA	0.294													6	70					0	0	0	0
CCDC77	84318	broad.mit.edu	37	12	539877	539877	+	Missense_Mutation	SNP	G	C	C			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr12:539877G>C	uc001qig.2	+	7	738	c.558G>C	c.(556-558)CAG>CAC	p.Q186H	CCDC77_uc009zdk.2_Missense_Mutation_p.Q154H|CCDC77_uc010sdp.1_Missense_Mutation_p.Q154H|CCDC77_uc010sdq.1_Missense_Mutation_p.Q154H	NM_032358	NP_115734	Q9BR77	CCD77_HUMAN	coiled-coil domain containing 77 isoform a	186						centrosome				ovary(1)	1	all_cancers(10;0.0149)|all_epithelial(11;0.035)|all_lung(10;0.111)|Ovarian(42;0.142)|Lung NSC(10;0.156)		OV - Ovarian serous cystadenocarcinoma(31;0.00123)|BRCA - Breast invasive adenocarcinoma(9;0.033)			AATGTGAGCAGAGTGAATCTT	0.343													67	252					0	0	0	0
LOC653113	653113	broad.mit.edu	37	12	8384442	8384442	+	RNA	SNP	C	T	T			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr12:8384442C>T	uc010sgk.1	-	5		c.1346G>A				NR_024254				Homo sapiens family with sequence similarity 86, member A pseudogene (LOC653113), non-coding RNA.												0						CAGGGCAAACCCTTTCGAGCA	0.582													7	68					0	0	0	0
GRIN2B	2904	broad.mit.edu	37	12	13717097	13717097	+	Silent	SNP	G	A	A			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr12:13717097G>A	uc001rbt.2	-	13	3254	c.3075C>T	c.(3073-3075)ATC>ATT	p.I1025I		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	1025	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	AGGGGAGGCCGATGTCCAGGG	0.587													19	56					0	0	0	0
CAPRIN2	65981	broad.mit.edu	37	12	30863009	30863009	+	Missense_Mutation	SNP	A	C	C			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr12:30863009A>C	uc001rji.1	-	18	3962	c.3211T>G	c.(3211-3213)TTG>GTG	p.L1071V	CAPRIN2_uc001rjf.1_3'UTR|CAPRIN2_uc001rjg.1_Missense_Mutation_p.L738V|CAPRIN2_uc001rjh.1_Missense_Mutation_p.L1021V|CAPRIN2_uc001rjj.1_Missense_Mutation_p.L737V|CAPRIN2_uc001rjk.3_3'UTR|CAPRIN2_uc001rjl.3_3'UTR	NM_001002259	NP_001002259	Q6IMN6	CAPR2_HUMAN	C1q domain containing 1 isoform 1	1071	C1q.				negative regulation of cell growth|negative regulation of translation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of dendrite morphogenesis|positive regulation of dendritic spine morphogenesis|positive regulation of peptidyl-serine phosphorylation|positive regulation of protein binding|positive regulation of transcription from RNA polymerase II promoter	mitochondrion|receptor complex	receptor binding|RNA binding			ovary(1)|central_nervous_system(1)	2	all_lung(12;1.13e-09)|Lung NSC(12;7.98e-08)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0355)|Lung SC(12;0.0905)|Esophageal squamous(101;0.233)					GCTGATACCAAGACCTCTTCA	0.443													35	124					0	0	0	0
DDN	23109	broad.mit.edu	37	12	49391856	49391856	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr12:49391856C>T	uc001rsv.1	-	2	821	c.803G>A	c.(802-804)CGC>CAC	p.R268H	uc001rsw.2_5'Flank	NM_015086	NP_055901	O94850	DEND_HUMAN	dendrin	268						dendritic spine membrane|endoplasmic reticulum membrane|nucleus|perikaryon				large_intestine(1)	1						CTTCTTTGTGCGCCCTCCGTC	0.652													5	158					0	0	0	0
DDN	23109	broad.mit.edu	37	12	49391990	49391990	+	Silent	SNP	C	T	T			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr12:49391990C>T	uc001rsv.1	-	2	687	c.669G>A	c.(667-669)CGG>CGA	p.R223R	uc001rsw.2_5'Flank	NM_015086	NP_055901	O94850	DEND_HUMAN	dendrin	223	Interaction with MAGI2.					dendritic spine membrane|endoplasmic reticulum membrane|nucleus|perikaryon				large_intestine(1)	1						AGGGTGGCGGCCGGTCCCAGC	0.701													3	61					0	0	0	0
AAAS	8086	broad.mit.edu	37	12	53715239	53715239	+	Missense_Mutation	SNP	A	C	C			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr12:53715239A>C	uc001scr.3	-	1	174	c.11T>G	c.(10-12)CTG>CGG	p.L4R	AAAS_uc001scs.3_Missense_Mutation_p.L4R	NM_015665	NP_056480	Q9NRG9	AAAS_HUMAN	achalasia, adrenocortical insufficiency,	4					carbohydrate metabolic process|glucose transport|nucleocytoplasmic transport|regulation of glucose transport|regulation of nucleocytoplasmic transport|transmembrane transport|viral reproduction	nuclear pore				ovary(1)	1						GAACAACCCCAGAGAGCACAT	0.622											OREG0021865	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	103	239					0	0	0	0
ZBTB39	9880	broad.mit.edu	37	12	57398238	57398238	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr12:57398238G>A	uc001sml.1	-	2	550	c.464C>T	c.(463-465)CCC>CTC	p.P155L	RDH16_uc010sqx.1_5'Flank	NM_014830	NP_055645	O15060	ZBT39_HUMAN	zinc finger and BTB domain containing 39	155					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)	1						TTCTCCAAGGGGATGGGCAGG	0.552													79	151					0	0	0	0
Unknown	0	broad.mit.edu	37	12	80749653	80749653	+	5'Flank	SNP	C	A	A			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr12:80749653C>A	uc009zsg.1	+						uc001szd.2_5'Flank					RecName: Full=Uncharacterized protein C12orf64;																		AGAGCCCACGCCAGTTTGTGA	0.433													75	202					2.97807e-44	3.93221e-44	1	0
RNF10	9921	broad.mit.edu	37	12	120995094	120995094	+	Missense_Mutation	SNP	A	G	G			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr12:120995094A>G	uc001typ.3	+	5	1138	c.655A>G	c.(655-657)AGC>GGC	p.S219G	RNF10_uc010szk.1_RNA|RNF10_uc001tyq.3_Missense_Mutation_p.S125G	NM_014868	NP_055683	Q8N5U6	RNF10_HUMAN	ring finger protein 10	219					negative regulation of Schwann cell proliferation|positive regulation of myelination|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|nucleus	protein binding|transcription regulatory region DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					GCGCATTTGTAGCCATGAAGT	0.483													3	212					0	0	0	0
TPTE2	93492	broad.mit.edu	37	13	19997299	19997299	+	Missense_Mutation	SNP	C	A	A			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr13:19997299C>A	uc001umd.2	-	21	1683	c.1472G>T	c.(1471-1473)TGT>TTT	p.C491F	TPTE2_uc009zzk.2_RNA|TPTE2_uc009zzl.2_Missense_Mutation_p.C380F|TPTE2_uc001ume.2_Missense_Mutation_p.C414F|TPTE2_uc009zzm.2_Missense_Mutation_p.C162F|TPTE2_uc010tcm.1_RNA|TPTE2_uc010tcl.1_Missense_Mutation_p.C162F	NM_199254	NP_954863	Q6XPS3	TPTE2_HUMAN	TPTE and PTEN homologous inositol lipid	491	C2 tensin-type.					endoplasmic reticulum membrane|integral to membrane	ion channel activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity				0		all_cancers(29;1.23e-20)|all_lung(29;1.97e-20)|all_epithelial(30;5.86e-20)|Lung NSC(5;3.36e-17)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;1.73e-05)|Epithelial(112;7.42e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.000785)|Lung(94;0.0176)|LUSC - Lung squamous cell carcinoma(192;0.089)		TCTTGGTAGACAAAGCCTAAG	0.353													10	89					2.17888e-05	2.49015e-05	1	0
IFT88	8100	broad.mit.edu	37	13	21219018	21219018	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr13:21219018G>A	uc001unh.2	+	22	2293	c.1897G>A	c.(1897-1899)GAG>AAG	p.E633K	IFT88_uc001uni.2_Missense_Mutation_p.E624K|IFT88_uc001unj.2_Missense_Mutation_p.E623K|IFT88_uc010tcq.1_Missense_Mutation_p.E604K	NM_175605	NP_783195	Q13099	IFT88_HUMAN	intraflagellar transport 88 homolog isoform 1	633	TPR 11.				cilium morphogenesis	centriole|intraflagellar transport particle B|microtubule basal body|microtubule-based flagellum	protein binding			ovary(1)	1		all_cancers(29;5.79e-25)|all_epithelial(30;2.57e-20)|all_lung(29;3.13e-16)|Lung SC(185;0.0262)|Ovarian(182;0.0825)|Hepatocellular(188;0.244)		all cancers(112;0.000667)|Epithelial(112;0.00119)|OV - Ovarian serous cystadenocarcinoma(117;0.0141)|Lung(94;0.0183)|LUSC - Lung squamous cell carcinoma(192;0.0528)		TGAAGTCATTGAGTGGCTTGG	0.308													36	149					0	0	0	0
C14orf93	60686	broad.mit.edu	37	14	23459034	23459034	+	Missense_Mutation	SNP	A	G	G			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr14:23459034A>G	uc001wib.1	-	5	1311	c.1001T>C	c.(1000-1002)ATT>ACT	p.I334T	C14orf93_uc001wic.1_Missense_Mutation_p.I154T|C14orf93_uc001wid.1_Missense_Mutation_p.I334T|C14orf93_uc001wig.2_Missense_Mutation_p.I334T|C14orf93_uc001wih.2_Missense_Mutation_p.I334T|C14orf93_uc001wie.2_Missense_Mutation_p.I334T|C14orf93_uc001wia.3_Missense_Mutation_p.I334T|C14orf93_uc001wif.2_Missense_Mutation_p.I154T	NM_021944	NP_068763	Q9H972	CN093_HUMAN	hypothetical protein LOC60686 precursor	334						extracellular region				ovary(1)	1	all_cancers(95;3.3e-05)			GBM - Glioblastoma multiforme(265;0.0127)		CACTACTGAAATATTCCAAGA	0.418													37	96					0	0	0	0
MBIP	51562	broad.mit.edu	37	14	36783737	36783737	+	Silent	SNP	A	G	G			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr14:36783737A>G	uc001wtm.2	-	4	640	c.552T>C	c.(550-552)AAT>AAC	p.N184N	MBIP_uc001wto.2_Silent_p.N184N|MBIP_uc010tpy.1_Silent_p.N43N|MBIP_uc001wtn.2_Silent_p.N184N	NM_016586	NP_057670	Q9NS73	MBIP1_HUMAN	MAP3K12 binding inhibitory protein 1 isoform 1	184	Interaction with MAP3K12.				histone H3 acetylation|inactivation of MAPK activity involved in osmosensory signaling pathway	Ada2/Gcn5/Ada3 transcription activator complex|cytoplasm|nucleolus	identical protein binding|protein kinase inhibitor activity				0	all_cancers(3;1.55e-52)|all_epithelial(1;2.69e-62)|Breast(36;0.0505)|Hepatocellular(127;0.158)|Esophageal squamous(585;0.164)		Lung(8;1.28e-07)|LUAD - Lung adenocarcinoma(9;3e-07)|Epithelial(34;0.0303)|all cancers(34;0.0781)	GBM - Glioblastoma multiforme(112;0.0191)		AATCAATAACATTGCAAAATT	0.279													13	44					0	0	0	0
SPTB	6710	broad.mit.edu	37	14	65262141	65262141	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr14:65262141G>A	uc001xht.2	-	11	1612	c.1558C>T	c.(1558-1560)CGG>TGG	p.R520W	SPTB_uc001xhr.2_Missense_Mutation_p.R520W|SPTB_uc001xhs.2_Missense_Mutation_p.R520W|SPTB_uc001xhu.2_Missense_Mutation_p.R520W	NM_000347	NP_000338	P11277	SPTB1_HUMAN	spectrin beta isoform b	520	Spectrin 3.				actin filament capping|axon guidance	cell surface|cytosol|intrinsic to internal side of plasma membrane|protein complex|spectrin|spectrin-associated cytoskeleton	actin filament binding|structural constituent of cytoskeleton			ovary(7)|skin(2)|lung(1)|central_nervous_system(1)	11		all_lung(585;4.15e-09)		all cancers(60;4.33e-34)|OV - Ovarian serous cystadenocarcinoma(108;8.32e-20)|BRCA - Breast invasive adenocarcinoma(234;0.0628)		CTCTGGCGCCGGGACTGCAGC	0.602													32	80					0	0	0	0
BTBD7	55727	broad.mit.edu	37	14	93717956	93717956	+	Missense_Mutation	SNP	G	A	A	rs147262200	by1000genomes	TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr14:93717956G>A	uc001ybo.2	-	8	2121	c.1795C>T	c.(1795-1797)CGC>TGC	p.R599C	BTBD7_uc010aur.2_Missense_Mutation_p.R124C|BTBD7_uc010two.1_Missense_Mutation_p.R419C|BTBD7_uc001ybp.2_Missense_Mutation_p.R248C	NM_001002860	NP_001002860	Q9P203	BTBD7_HUMAN	BTB (POZ) domain containing 7 isoform 1	599										pancreas(1)	1		all_cancers(154;0.08)		Epithelial(152;0.196)|COAD - Colon adenocarcinoma(157;0.212)|all cancers(159;0.223)		ATTCGCAAGCGCACAAGATCC	0.438													5	327					0	0	0	0
CYP46A1	10858	broad.mit.edu	37	14	100188342	100188342	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr14:100188342G>A	uc001ygo.2	+	12	1115	c.1115G>A	c.(1114-1116)CGC>CAC	p.R372H	CYP46A1_uc001ygp.2_Missense_Mutation_p.R219H	NM_006668	NP_006659	Q9Y6A2	CP46A_HUMAN	cytochrome P450, family 46	372					bile acid biosynthetic process|cholesterol catabolic process|nervous system development|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	cholesterol 24-hydroxylase activity|electron carrier activity|heme binding|steroid hydroxylase activity				0		Melanoma(154;0.0866)|all_epithelial(191;0.179)				GGCACCTTTCGCCTGCTGGAA	0.622													45	123					0	0	0	0
ALPK3	57538	broad.mit.edu	37	15	85384098	85384098	+	Silent	SNP	C	A	A			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr15:85384098C>A	uc002ble.2	+	5	2361	c.2194C>A	c.(2194-2196)CGG>AGG	p.R732R		NM_020778	NP_065829	Q96L96	ALPK3_HUMAN	alpha-kinase 3	732					heart development	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(3)|ovary(3)|lung(2)|skin(2)|central_nervous_system(1)|breast(1)	12			BRCA - Breast invasive adenocarcinoma(143;0.0587)			GCCCCCTGCCCGGCGGAGACA	0.647													28	48					4.7796e-09	5.60367e-09	1	0
CLUAP1	23059	broad.mit.edu	37	16	3554771	3554771	+	Missense_Mutation	SNP	A	G	G			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr16:3554771A>G	uc002cvk.1	+	2	179	c.74A>G	c.(73-75)GAA>GGA	p.E25G	CLUAP1_uc002cvj.1_Missense_Mutation_p.E25G|CLUAP1_uc002cvl.1_Missense_Mutation_p.E25G	NM_015041	NP_055856	Q96AJ1	CLUA1_HUMAN	clusterin associated protein 1 isoform 1	25						nucleus	protein binding			ovary(1)|breast(1)|pancreas(1)	3						ATTTCTATGGAAAATTTCCGT	0.413													23	100					0	0	0	0
DNAH3	55567	broad.mit.edu	37	16	20959878	20959878	+	Missense_Mutation	SNP	T	C	C			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr16:20959878T>C	uc010vbe.1	-	57	11270	c.11270A>G	c.(11269-11271)AAG>AGG	p.K3757R	DNAH3_uc010vbd.1_Missense_Mutation_p.K1192R	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	3757					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		CTCAATTTCCTTACAGTAGAA	0.527													3	85					0	0	0	0
ZNF768	79724	broad.mit.edu	37	16	30537133	30537133	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr16:30537133G>A	uc002dyk.3	-	2	504	c.328C>T	c.(328-330)CAG>TAG	p.Q110*	ZNF768_uc010vex.1_Nonsense_Mutation_p.Q79*|uc002dyl.1_5'Flank|ZNF768_uc010vew.1_Nonsense_Mutation_p.Q79*	NM_024671	NP_078947	Q9H5H4	ZN768_HUMAN	zinc finger protein 768	110	Pro-rich.				regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	DNA-directed RNA polymerase II, core complex	DNA binding|zinc ion binding				0						TCAGGGCTCTGAGAATCTGAT	0.592													61	172					0	0	0	0
ADAMTS18	170692	broad.mit.edu	37	16	77387771	77387771	+	Silent	SNP	C	A	A	rs148669189		TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr16:77387771C>A	uc002ffc.3	-	10	1892	c.1473G>T	c.(1471-1473)GCG>GCT	p.A491A	ADAMTS18_uc010chc.1_Silent_p.A79A|ADAMTS18_uc002ffe.1_Silent_p.A187A	NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	491	Peptidase M12B.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						CTAGACACCCCGCCTGAGGTG	0.418													57	226					2.67592e-24	3.43326e-24	1	0
MAF	4094	broad.mit.edu	37	16	79633679	79633679	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr16:79633679G>A	uc002ffn.2	-	1	944	c.121C>T	c.(121-123)CGC>TGC	p.R41C	MAF_uc002ffm.2_Missense_Mutation_p.R41C	NM_001031804	NP_001026974	O75444	MAF_HUMAN	v-maf musculoaponeurotic fibrosarcoma oncogene	41					transcription from RNA polymerase II promoter	chromatin|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			lung(1)	1		all_epithelial(2;0.139)|Lung NSC(2;0.186)|Melanoma(2;0.211)		UCEC - Uterine corpus endometrioid carcinoma (2;0.0178)		CTGATGATGCGGTCGGTCTCC	0.607			T	IGH@	MM								19	55					0	0	0	0
TP53	7157	broad.mit.edu	37	17	7579310	7579310	+	Splice_Site	SNP	A	T	T			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr17:7579310A>T	uc002gim.2	-	4	569	c.375_splice	c.e4+1	p.T125_splice	TP53_uc002gig.1_Splice_Site_p.T125_splice|TP53_uc002gih.2_Splice_Site_p.T125_splice|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_5'Flank|TP53_uc010cng.1_5'Flank|TP53_uc002gii.1_5'Flank|TP53_uc010cnh.1_Splice_Site_p.T125_splice|TP53_uc010cni.1_Splice_Site_p.T125_splice|TP53_uc002gij.2_Splice_Site_p.T125_splice|TP53_uc010cnj.1_5'Flank|TP53_uc002gin.2_Intron|TP53_uc002gio.2_Intron|TP53_uc010vug.1_Splice_Site_p.T86_splice	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a						activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.0?(7)|p.?(5)|p.V73fs*9(1)|p.Y126fs*11(1)|p.P13fs*18(1)|p.T125_Y126insX(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		AGGGCAACTGACCGTGCAAGT	0.532		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			56	81					0	0	0	0
SLFN13	146857	broad.mit.edu	37	17	33772744	33772744	+	Translation_Start_Site	SNP	G	C	C			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr17:33772744G>C	uc002hjk.1	-	1	286	c.-44C>G	c.(-46--42)ATCAA>ATGAA		SLFN13_uc010wch.1_Intron|SLFN13_uc002hjl.2_Intron|SLFN13_uc010ctt.2_Intron|SLFN13_uc002hjm.2_Intron	NM_144682	NP_653283	Q68D06	SLN13_HUMAN	schlafen family member 13							intracellular	ATP binding			ovary(1)|breast(1)	2				UCEC - Uterine corpus endometrioid carcinoma (308;0.0185)		TTTCATTTTTGATTAAAAAAT	0.244													5	15					0	0	0	0
GPR179	440435	broad.mit.edu	37	17	36485440	36485440	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr17:36485440G>A	uc002hpz.2	-	11	4033	c.4012C>T	c.(4012-4014)CAG>TAG	p.Q1338*		NM_001004334	NP_001004334	Q6PRD1	GP179_HUMAN	GPR158-like 1 precursor	1338	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)	3	Breast(7;2.97e-12)	Breast(25;0.0101)|Ovarian(249;0.15)				CCAGGGTCCTGAGGAGCTGAC	0.612													36	134					0	0	0	0
PRKAR1A	5573	broad.mit.edu	37	17	66518980	66518980	+	Silent	SNP	C	A	A			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr17:66518980C>A	uc002jhg.2	+	3	441	c.261C>A	c.(259-261)CCC>CCA	p.P87P	PRKAR1A_uc002jhh.2_Silent_p.P87P|PRKAR1A_uc002jhi.2_Silent_p.P87P|PRKAR1A_uc002jhj.2_Silent_p.P87P|PRKAR1A_uc002jhk.2_5'UTR|PRKAR1A_uc002jhl.2_Silent_p.P87P|PRKAR1A_uc002jhm.2_Silent_p.P87P	NM_212471	NP_997636	P10644	KAP0_HUMAN	cAMP-dependent protein kinase, regulatory	87	Dimerization and phosphorylation.				activation of phospholipase C activity|activation of protein kinase A activity|blood coagulation|cellular response to glucagon stimulus|energy reserve metabolic process|intracellular signal transduction|nerve growth factor receptor signaling pathway|regulation of insulin secretion|regulation of transcription from RNA polymerase II promoter|transmembrane transport|water transport	cAMP-dependent protein kinase complex|cytosol	cAMP binding|cAMP-dependent protein kinase regulator activity|protein binding			adrenal_gland(4)|lung(3)|thyroid(2)|soft_tissue(2)|breast(1)	12	Breast(10;1.64e-13)					CTCCTCCACCCAACCCAGTGG	0.488			T|Mis|N|F|S	RET	papillary thyroid	myxoma|endocrine|papillary thyroid			Carney_Complex|Primary_Pigmented_Nodular_Adrenocortical_Disease_Familial|Cardiac_Myxomas_Familial_Clustering_of				4	126					0.000602214	0.000676869	1	0
ABCA5	23461	broad.mit.edu	37	17	67310534	67310534	+	Missense_Mutation	SNP	A	G	G			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr17:67310534A>G	uc002jif.2	-	1	1241	c.23T>C	c.(22-24)GTA>GCA	p.V8A	ABCA5_uc002jig.2_Missense_Mutation_p.V8A|ABCA5_uc002jih.2_Missense_Mutation_p.V8A|ABCA5_uc010dfe.2_Missense_Mutation_p.V8A	NM_018672	NP_061142	Q8WWZ7	ABCA5_HUMAN	ATP-binding cassette, sub-family A , member 5	8					cholesterol efflux|high-density lipoprotein particle remodeling|negative regulation of macrophage derived foam cell differentiation	Golgi membrane|integral to membrane|late endosome membrane|lysosomal membrane	ATP binding|ATPase activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Breast(10;3.72e-11)					CCAAACTCCTACCTCCCTAAT	0.358													5	208					0	0	0	0
CABLES1	91768	broad.mit.edu	37	18	20833900	20833900	+	Silent	SNP	C	T	T			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr18:20833900C>T	uc002kuc.2	+	9	1761	c.1761C>T	c.(1759-1761)GAC>GAT	p.D587D	C18orf45_uc010xaq.1_Intron|CABLES1_uc002kub.2_Silent_p.D90D|CABLES1_uc002kud.2_Silent_p.D322D	NM_001100619	NP_001094089	Q8TDN4	CABL1_HUMAN	Cdk5 and Abl enzyme substrate 1 isoform 2	587					blood coagulation|cell cycle|cell division|regulation of cell cycle|regulation of cell division	cytosol|nucleus	cyclin-dependent protein kinase regulator activity|protein binding			breast(1)	1	all_cancers(21;0.000102)|all_epithelial(16;2.48e-06)|Lung NSC(20;0.00696)|all_lung(20;0.0197)|Colorectal(14;0.0202)|Ovarian(20;0.127)					ATTTAATTGACGTAAGTAGCC	0.507													19	60					0	0	0	0
C18orf8	29919	broad.mit.edu	37	18	21098936	21098936	+	Silent	SNP	C	T	T			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr18:21098936C>T	uc010xax.1	+	8	857	c.736C>T	c.(736-738)CTA>TTA	p.L246L	C18orf8_uc010xau.1_Silent_p.L89L|C18orf8_uc010xav.1_Silent_p.L198L|C18orf8_uc010xaw.1_Silent_p.L89L|C18orf8_uc002kul.2_RNA	NM_013326	NP_037458	Q96DM3	MIC1_HUMAN	colon cancer-associated protein Mic1	246										ovary(1)	1	all_cancers(21;0.000122)|all_epithelial(16;8.08e-07)|Lung NSC(20;0.00206)|all_lung(20;0.00659)|Colorectal(14;0.0202)|Ovarian(20;0.127)					CCTCTATCATCTACCACGGTA	0.433													29	101					0	0	0	0
GTF2F1	2962	broad.mit.edu	37	19	6389470	6389470	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr19:6389470C>T	uc002meq.2	-	4	596	c.311G>A	c.(310-312)GGC>GAC	p.G104D	GTF2F1_uc010xjb.1_5'Flank|GTF2F1_uc010xjc.1_Missense_Mutation_p.G76D	NM_002096	NP_002087	P35269	T2FA_HUMAN	general transcription factor IIF, polypeptide 1,	104					mRNA capping|nuclear mRNA splicing, via spliceosome|positive regulation of transcription, DNA-dependent|positive regulation of viral transcription|response to virus|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|viral reproduction	cell junction|transcription factor TFIIF complex	catalytic activity|DNA binding|phosphatase activator activity|transcription coactivator activity|transcription factor binding				0						GCCTGATTTGCCGTTGACCCG	0.612													4	279					0	0	0	0
MUC16	94025	broad.mit.edu	37	19	9059514	9059514	+	Missense_Mutation	SNP	C	A	A			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr19:9059514C>A	uc002mkp.2	-	3	28136	c.27932G>T	c.(27931-27933)AGT>ATT	p.S9311I		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	9313	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGTGGGCACACTAGAAAGGAC	0.498													5	275					0.000602214	0.000676869	1	0
ZNF844	284391	broad.mit.edu	37	19	12187475	12187475	+	Missense_Mutation	SNP	C	G	G			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr19:12187475C>G	uc002mtb.2	+	4	1683	c.1540C>G	c.(1540-1542)CAT>GAT	p.H514D	ZNF844_uc010dym.1_Missense_Mutation_p.H357D	NM_001136501	NP_001129973	Q08AG5	ZN844_HUMAN	zinc finger protein 844	514					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AAAGCCTTCACATCTGCCTCA	0.408													3	101					0	0	0	0
CACNA1A	773	broad.mit.edu	37	19	13366020	13366020	+	Silent	SNP	C	A	A			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr19:13366020C>A	uc010dze.2	-	29	4883	c.4647G>T	c.(4645-4647)CCG>CCT	p.P1549P	CACNA1A_uc010xnd.1_Silent_p.P254P|CACNA1A_uc002mwx.3_Silent_p.P254P|CACNA1A_uc010dzc.2_Silent_p.P1074P|CACNA1A_uc002mwy.3_Silent_p.P1548P|CACNA1A_uc010xne.1_Silent_p.P1077P|CACNA1A_uc002mwv.3_Silent_p.P65P	NM_001127221	NP_001120693	O00555	CAC1A_HUMAN	calcium channel, alpha 1A subunit isoform 3	1549	Cytoplasmic (Potential).				cell death|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|membrane depolarization|regulation of insulin secretion	cytoplasm|nucleus	syntaxin binding			large_intestine(2)	2			OV - Ovarian serous cystadenocarcinoma(19;5.07e-21)		Bepridil(DB01244)|Cinnarizine(DB00568)|Loperamide(DB00836)|Nisoldipine(DB00401)|Pregabalin(DB00230)	GCTTGTTCTGCGGCATGTGTC	0.607													3	38					0.004672	0.00516579	1	0
ZNF222	7673	broad.mit.edu	37	19	44536829	44536829	+	Silent	SNP	C	G	G			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr19:44536829C>G	uc002oyc.2	+	4	1185	c.1002C>G	c.(1000-1002)GTC>GTG	p.V334V	ZNF284_uc010ejd.2_Intron|ZNF222_uc002oye.2_Silent_p.V374V|ZNF222_uc002oyd.2_Silent_p.V280V	NM_013360	NP_037492	Q9UK12	ZN222_HUMAN	zinc finger protein 222 isoform 2	334	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)	3		Prostate(69;0.0435)				ATCAACGAGTCCACACTGGAG	0.428													48	194					0	0	0	0
TTC15	51112	broad.mit.edu	37	2	3391502	3391502	+	Silent	SNP	C	T	T			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr2:3391502C>T	uc002qxm.1	+	2	314	c.108C>T	c.(106-108)ATC>ATT	p.I36I	TTC15_uc002qxn.1_Silent_p.I36I|TTC15_uc010ewm.1_Silent_p.I36I|TTC15_uc002qxl.1_Silent_p.I36I	NM_016030	NP_057114	Q8WVT3	TTC15_HUMAN	tetratricopeptide repeat domain 15	36							binding			ovary(2)|breast(1)|pancreas(1)	4	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.093)	all_cancers(51;0.214)		OV - Ovarian serous cystadenocarcinoma(76;0.0402)|Epithelial(75;0.0986)|all cancers(51;0.149)		AGGAAACCATCGATCTTGGCG	0.652													6	20					0	0	0	0
AGBL5	60509	broad.mit.edu	37	2	27278581	27278581	+	Missense_Mutation	SNP	C	A	A			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr2:27278581C>A	uc002rie.2	+	7	1157	c.940C>A	c.(940-942)CAG>AAG	p.Q314K	AGBL5_uc002ric.2_Missense_Mutation_p.Q314K|AGBL5_uc002rid.2_Missense_Mutation_p.Q314K|AGBL5_uc002rif.2_RNA	NM_021831	NP_068603	Q8NDL9	CBPC5_HUMAN	ATP/GTP binding protein-like 5 isoform 1	314					protein branching point deglutamylation|proteolysis	cytosol|nucleus	metallocarboxypeptidase activity|tubulin binding|zinc ion binding			ovary(1)|breast(1)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TCTGAACCGTCAGTACCTGAA	0.537													24	134					1.55469e-16	1.9398e-16	1	0
AGBL5	60509	broad.mit.edu	37	2	27278587	27278587	+	Silent	SNP	C	T	T			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr2:27278587C>T	uc002rie.2	+	7	1163	c.946C>T	c.(946-948)CTG>TTG	p.L316L	AGBL5_uc002ric.2_Silent_p.L316L|AGBL5_uc002rid.2_Silent_p.L316L|AGBL5_uc002rif.2_RNA	NM_021831	NP_068603	Q8NDL9	CBPC5_HUMAN	ATP/GTP binding protein-like 5 isoform 1	316					protein branching point deglutamylation|proteolysis	cytosol|nucleus	metallocarboxypeptidase activity|tubulin binding|zinc ion binding			ovary(1)|breast(1)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CCGTCAGTACCTGAAGCCTGA	0.542													25	137					0	0	0	0
FSHR	2492	broad.mit.edu	37	2	49190547	49190547	+	Silent	SNP	G	T	T			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr2:49190547G>T	uc002rww.2	-	10	1487	c.1413C>A	c.(1411-1413)ATC>ATA	p.I471I	FSHR_uc002rwx.2_Silent_p.I409I|FSHR_uc010fbn.2_Silent_p.I445I	NM_000145	NP_000136	P23945	FSHR_HUMAN	follicle stimulating hormone receptor isoform 1	471	Cytoplasmic (Potential).				female gamete generation|male gonad development|spermatogenesis	integral to membrane|plasma membrane	follicle-stimulating hormone receptor activity|protein binding			ovary(4)|lung(2)|central_nervous_system(1)|skin(1)	8		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.181)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)		Choriogonadotropin alfa(DB00097)|Follitropin beta(DB00066)|Menotropins(DB00032)|Urofollitropin(DB00094)	TGGCATGCGTGATGGTATGCC	0.542									Gonadal_Dysgenesis_46_XX				16	46					6.31663e-08	7.3424e-08	1	0
APLF	200558	broad.mit.edu	37	2	68740274	68740274	+	Missense_Mutation	SNP	A	G	G			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr2:68740274A>G	uc002sep.2	+	4	577	c.404A>G	c.(403-405)AAT>AGT	p.N135S	APLF_uc010fdf.2_Missense_Mutation_p.N111S	NM_173545	NP_775816	Q8IW19	APLF_HUMAN	aprataxin and PNKP like factor	135					double-strand break repair|single strand break repair	cytosol|nucleus	3'-5' exonuclease activity|DNA-(apurinic or apyrimidinic site) lyase activity|endodeoxyribonuclease activity|metal ion binding|nucleotide binding|protein binding			ovary(2)	2						CCCGTGATTAATTTACCTCAT	0.358													55	126					0	0	0	0
CTNNA2	1496	broad.mit.edu	37	2	80620389	80620389	+	Silent	SNP	T	C	C			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr2:80620389T>C	uc010ysh.1	+	7	1115	c.1110T>C	c.(1108-1110)ACT>ACC	p.T370T	CTNNA2_uc010yse.1_Silent_p.T370T|CTNNA2_uc010ysf.1_Silent_p.T370T|CTNNA2_uc010ysg.1_Silent_p.T370T|CTNNA2_uc010ysi.1_Silent_p.T2T	NM_004389	NP_004380	P26232	CTNA2_HUMAN	catenin, alpha 2 isoform 1	370					axonogenesis|brain morphogenesis|cell-cell adhesion|dendrite morphogenesis|muscle cell differentiation|positive regulation of muscle cell differentiation|prepulse inhibition|radial glia guided migration of Purkinje cell|regulation of synapse structural plasticity	actin cytoskeleton|axon|cytosol	cadherin binding|structural constituent of cytoskeleton			pancreas(4)|lung(3)|breast(1)|skin(1)	9						ATAAGATGACTAAGAAAACAA	0.318													56	158					0	0	0	0
MAT2A	4144	broad.mit.edu	37	2	85769823	85769823	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr2:85769823G>A	uc002spr.2	+	7	1027	c.904G>A	c.(904-906)GCA>ACA	p.A302T	MAT2A_uc010ysr.1_Missense_Mutation_p.A302T|MAT2A_uc010fgk.2_Missense_Mutation_p.A276T|MAT2A_uc010fgl.2_Missense_Mutation_p.A239T	NM_005911	NP_005902	P31153	METK2_HUMAN	methionine adenosyltransferase II, alpha	302					methylation|xenobiotic metabolic process	cytosol	ATP binding|metal ion binding|methionine adenosyltransferase activity				0					L-Methionine(DB00134)|S-Adenosylmethionine(DB00118)	TCGTTGGGTGGCAAAATCCCT	0.478													4	112					0	0	0	0
GPR45	11250	broad.mit.edu	37	2	105858867	105858867	+	Silent	SNP	G	T	T			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr2:105858867G>T	uc002tco.1	+	1	668	c.552G>T	c.(550-552)CTG>CTT	p.L184L		NM_007227	NP_009158	Q9Y5Y3	GPR45_HUMAN	G protein-coupled receptor 45	184	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity|protein binding			ovary(1)|breast(1)|central_nervous_system(1)	3						AGTGCGTGCTGGGCTACACGG	0.687													9	38					0.00829132	0.0090937	1	0
RGPD4	285190	broad.mit.edu	37	2	108496477	108496477	+	Missense_Mutation	SNP	A	C	C			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr2:108496477A>C	uc010ywk.1	+	21	5060	c.4978A>C	c.(4978-4980)AGT>CGT	p.S1660R	RGPD4_uc002tdu.2_Missense_Mutation_p.S847R|RGPD4_uc010ywl.1_RNA	NM_182588	NP_872394	Q7Z3J3	RGPD4_HUMAN	RANBP2-like and GRIP domain containing 4	1660					intracellular transport		binding			skin(2)	2						TCAGAAGCTCAGTTCCACCAC	0.408													4	237					0	0	0	0
DDX11L2	84771	broad.mit.edu	37	2	114357557	114357557	+	Nonstop_Mutation	SNP	A	G	G	rs115341812	by1000genomes	TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr2:114357557A>G	uc010yxx.1	-	3	709	c.382T>C	c.(382-384)TAG>CAG	p.*128Q						SubName: Full=DEAD/H box polypeptide 11 like 2;												0						GCCTACTTCTAGTGAAACTGG	0.567													4	39					0	0	0	0
TBC1D20	128637	broad.mit.edu	37	20	419364	419364	+	Missense_Mutation	SNP	T	A	A			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr20:419364T>A	uc002wds.2	-	8	1216	c.1078A>T	c.(1078-1080)ACC>TCC	p.T360S	TBC1D20_uc002wdv.2_Missense_Mutation_p.T183S|TBC1D20_uc002wdt.2_RNA|TBC1D20_uc002wdu.2_RNA	NM_144628	NP_653229	Q96BZ9	TBC20_HUMAN	TBC1 domain family, member 20	360					interspecies interaction between organisms	integral to membrane|intracellular	Rab GTPase activator activity			central_nervous_system(1)	1		all_epithelial(17;0.228)|Breast(17;0.231)				CTTGGCTTGGTCAGGACATCT	0.567													91	227					0	0	0	0
BAGE2	85319	broad.mit.edu	37	21	11058168	11058168	+	Missense_Mutation	SNP	A	T	T			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr21:11058168A>T	uc002yit.1	-	3	480	c.272T>A	c.(271-273)CTG>CAG	p.L91Q	BAGE_uc002yiw.1_RNA	NM_182482	NP_872288			B melanoma antigen family, member 2 precursor												0			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		TACATCTTTCAGGAGCTTGGT	0.388													8	179					0	0	0	0
GCAT	23464	broad.mit.edu	37	22	38212212	38212212	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr22:38212212G>A	uc003atz.2	+	8	1012	c.992G>A	c.(991-993)CGT>CAT	p.R331H	GCAT_uc003aua.1_Missense_Mutation_p.R357H	NM_014291	NP_055106	O75600	KBL_HUMAN	glycine C-acetyltransferase precursor	331					biosynthetic process|cellular amino acid metabolic process		glycine C-acetyltransferase activity|pyridoxal phosphate binding|transferase activity, transferring nitrogenous groups				0	Melanoma(58;0.045)				Glycine(DB00145)|Pyridoxal Phosphate(DB00114)	CACAGGTTCCGTAGTAAGATG	0.612													26	60					0	0	0	0
ZBTB20	26137	broad.mit.edu	37	3	114057937	114057937	+	Missense_Mutation	SNP	G	C	C			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr3:114057937G>C	uc003ebi.2	-	5	2321	c.2141C>G	c.(2140-2142)ACT>AGT	p.T714S	ZBTB20_uc003ebj.2_Missense_Mutation_p.T641S|ZBTB20_uc010hqp.2_Missense_Mutation_p.T641S|ZBTB20_uc003ebk.2_Missense_Mutation_p.T641S|ZBTB20_uc003ebl.2_Missense_Mutation_p.T641S|ZBTB20_uc003ebm.2_Missense_Mutation_p.T641S|ZBTB20_uc003ebn.2_Missense_Mutation_p.T641S	NM_015642	NP_056457	Q9HC78	ZBT20_HUMAN	zinc finger and BTB domain containing 20 isoform	714					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)|skin(1)	5				LUSC - Lung squamous cell carcinoma(41;0.0581)|Lung(219;0.191)		GCAGACGTAAGTGGTCCCCTC	0.612													4	138					0	0	0	0
RAB7A	7879	broad.mit.edu	37	3	128526498	128526498	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr3:128526498G>A	uc003eks.1	+	5	744	c.512G>A	c.(511-513)CGG>CAG	p.R171Q	RAB7A_uc010hsv.1_Missense_Mutation_p.R124Q|RAB7A_uc003ekt.2_Intron	NM_004637	NP_004628	P51149	RAB7A_HUMAN	RAB7, member RAS oncogene family	171					endocytosis|endosome to lysosome transport|epidermal growth factor catabolic process|protein transport|small GTPase mediated signal transduction	Golgi apparatus|late endosome|lysosome|melanosome|phagocytic vesicle	GDP binding|GTP binding|GTPase activity|protein binding				0				GBM - Glioblastoma multiforme(114;0.231)		ACGATTGCACGGAATGCACTT	0.577													4	234					0	0	0	0
EPHB1	2047	broad.mit.edu	37	3	134885846	134885846	+	Missense_Mutation	SNP	G	T	T			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr3:134885846G>T	uc003eqt.2	+	9	1977	c.1757G>T	c.(1756-1758)CGA>CTA	p.R586L	EPHB1_uc003equ.2_Missense_Mutation_p.R147L	NM_004441	NP_004432	P54762	EPHB1_HUMAN	ephrin receptor EphB1 precursor	586	Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity|protein binding			lung(11)|ovary(6)|stomach(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|pancreas(1)	30						AGCACAGGCCGAGGTAAGTAG	0.547													89	420					1.59228e-47	2.12304e-47	1	0
IFT80	57560	broad.mit.edu	37	3	160025482	160025482	+	Missense_Mutation	SNP	C	A	A			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr3:160025482C>A	uc011boy.1	-	10	1478	c.1045G>T	c.(1045-1047)GTT>TTT	p.V349F	IFT80_uc003fda.2_RNA|IFT80_uc003fdb.1_Missense_Mutation_p.V212F|IFT80_uc003fdd.1_Missense_Mutation_p.V32F|IFT80_uc003fde.1_Missense_Mutation_p.V212F	NM_020800	NP_065851	Q9P2H3	IFT80_HUMAN	WD repeat domain 56	349						cilium axoneme|microtubule basal body				ovary(1)	1			Lung(72;0.00334)|LUSC - Lung squamous cell carcinoma(72;0.00523)			GACGTTGAAACAACTAAGTGT	0.358													27	61					5.61819e-17	7.07476e-17	1	0
GRID2	2895	broad.mit.edu	37	4	94138038	94138038	+	Missense_Mutation	SNP	G	T	T			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr4:94138038G>T	uc011cdt.1	+	6	1197	c.939G>T	c.(937-939)AAG>AAT	p.K313N	GRID2_uc010ikx.2_Missense_Mutation_p.K313N|GRID2_uc011cdu.1_Missense_Mutation_p.K218N|GRID2_uc010ikz.1_Translation_Start_Site	NM_001510	NP_001501	O43424	GRID2_HUMAN	glutamate receptor, ionotropic, delta 2	313	Extracellular (Potential).				glutamate signaling pathway	cell junction|integral to plasma membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.177)		OV - Ovarian serous cystadenocarcinoma(123;3.22e-06)|LUSC - Lung squamous cell carcinoma(81;0.185)|Lung(65;0.191)	L-Glutamic Acid(DB00142)	GTGATCCAAAGGATCCATTTG	0.418													52	179					4.33383e-22	5.50842e-22	1	0
UNC5C	8633	broad.mit.edu	37	4	96256707	96256707	+	Missense_Mutation	SNP	T	C	C			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr4:96256707T>C	uc003htp.1	-	2	354	c.200A>G	c.(199-201)GAG>GGG	p.E67G	UNC5C_uc010ilc.1_Missense_Mutation_p.E67G|UNC5C_uc003htq.2_Missense_Mutation_p.E67G	NM_003728	NP_003719	O95185	UNC5C_HUMAN	unc5C precursor	67	Extracellular (Potential).|Ig-like.				apoptosis|axon guidance|brain development	integral to membrane	netrin receptor activity			ovary(3)|pancreas(1)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;8.72e-10)		TTCTTCAGGCTCAATAAGGAA	0.418													3	140					0	0	0	0
NR3C2	4306	broad.mit.edu	37	4	149357399	149357399	+	Missense_Mutation	SNP	C	A	A			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr4:149357399C>A	uc003ilj.3	-	2	948	c.614G>T	c.(613-615)TGC>TTC	p.C205F	NR3C2_uc003ilk.3_Missense_Mutation_p.C205F|NR3C2_uc010iph.2_RNA	NM_000901	NP_000892	P08235	MCR_HUMAN	nuclear receptor subfamily 3, group C, member 2	205	Modulating.				regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	endoplasmic reticulum membrane|nucleoplasm	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|zinc ion binding			large_intestine(1)	1	all_hematologic(180;0.151)			GBM - Glioblastoma multiforme(119;0.0614)	Desoxycorticosterone Pivalate(DB01134)|Eplerenone(DB00700)|Fludrocortisone(DB00687)|Spironolactone(DB00421)	AGCAGGGCTGCAAACCGAAGA	0.537													30	95					7.38237e-10	8.80704e-10	1	0
CMYA5	202333	broad.mit.edu	37	5	79032114	79032114	+	Missense_Mutation	SNP	A	T	T			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr5:79032114A>T	uc003kgc.2	+	2	7598	c.7526A>T	c.(7525-7527)AAA>ATA	p.K2509I		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	2509						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		AAAGAATCAAAAGCCGATGCT	0.368													22	81					0	0	0	0
GPR98	84059	broad.mit.edu	37	5	89943453	89943453	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr5:89943453C>T	uc003kju.2	+	17	3257	c.3161C>T	c.(3160-3162)CCT>CTT	p.P1054L	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	1054	Calx-beta 8.|Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		GATTTCATTCCTGTTGAAAAA	0.423													41	137					0	0	0	0
GPR98	84059	broad.mit.edu	37	5	90106533	90106533	+	Silent	SNP	T	C	C			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr5:90106533T>C	uc003kju.2	+	74	15552	c.15456T>C	c.(15454-15456)CCT>CCC	p.P5152P	GPR98_uc003kjt.2_Silent_p.P2858P|GPR98_uc003kjw.2_Silent_p.P813P	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	5152	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		CTCTCATTCCTGTAGAAACTG	0.458													85	237					0	0	0	0
SLC23A1	9963	broad.mit.edu	37	5	138714989	138714989	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr5:138714989G>A	uc003leh.2	-	9	1077	c.980C>T	c.(979-981)GCC>GTC	p.A327V	SLC23A1_uc003leg.2_Missense_Mutation_p.A331V	NM_005847	NP_005838	Q9UHI7	S23A1_HUMAN	solute carrier family 23 (nucleobase	327	Helical; (Potential).				brain development|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|response to toxin|transepithelial L-ascorbic acid transport|water-soluble vitamin metabolic process	apical plasma membrane|cytoplasm|integral to plasma membrane|intracellular organelle|membrane fraction	dehydroascorbic acid transporter activity|L-ascorbate:sodium symporter activity|nucleobase transmembrane transporter activity|protein binding|sodium-dependent L-ascorbate transmembrane transporter activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00325)		Vitamin C(DB00126)	TGCCAGAGTGGCGCTGAACAT	0.607													34	78					0	0	0	0
PCDHA2	56146	broad.mit.edu	37	5	140176610	140176610	+	Silent	SNP	G	T	T			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr5:140176610G>T	uc003lhd.2	+	1	2167	c.2061G>T	c.(2059-2061)GCG>GCT	p.A687A	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhc.1_Silent_p.A687A|PCDHA2_uc011czy.1_Silent_p.A687A	NM_018905	NP_061728	Q9Y5H9	PCDA2_HUMAN	protocadherin alpha 2 isoform 1 precursor	687	Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGGGCGCCGCGGGCTCAGAGG	0.647													39	152					5.57489e-27	7.22081e-27	1	0
PCDHA13	56136	broad.mit.edu	37	5	140261993	140261993	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr5:140261993G>A	uc003lif.2	+	1	140	c.140G>A	c.(139-141)CGC>CAC	p.R47H	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Missense_Mutation_p.R47H|PCDHA13_uc003lid.2_Missense_Mutation_p.R47H	NM_018904	NP_061727	Q9Y5I0	PCDAD_HUMAN	protocadherin alpha 13 isoform 1 precursor	47	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|skin(2)|central_nervous_system(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TTCGTGGGCCGCATCGCTCAG	0.642													78	221					0	0	0	0
ABLIM3	22885	broad.mit.edu	37	5	148620311	148620311	+	Missense_Mutation	SNP	A	G	G			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr5:148620311A>G	uc003lpy.2	+	14	1528	c.1277A>G	c.(1276-1278)CAG>CGG	p.Q426R	ABLIM3_uc003lpz.1_Missense_Mutation_p.Q426R|ABLIM3_uc003lqa.1_Intron|ABLIM3_uc003lqb.2_Intron|ABLIM3_uc003lqc.1_Intron|ABLIM3_uc003lqd.1_Intron|ABLIM3_uc003lqf.2_Intron|ABLIM3_uc003lqe.1_Intron	NM_014945	NP_055760	O94929	ABLM3_HUMAN	actin binding LIM protein family, member 3	426					axon guidance|cytoskeleton organization	cytoplasm	actin binding|zinc ion binding			ovary(2)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACCTCTTACCAGGCTCCCAAG	0.592													3	201					0	0	0	0
SLU7	10569	broad.mit.edu	37	5	159831502	159831502	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr5:159831502C>T	uc003lyg.2	-	15	1681	c.1526G>A	c.(1525-1527)CGA>CAA	p.R509Q		NM_006425	NP_006416	O95391	SLU7_HUMAN	step II splicing factor SLU7	509					alternative nuclear mRNA splicing, via spliceosome|nuclear mRNA 3'-splice site recognition	catalytic step 2 spliceosome|cytoplasm|nuclear speck|small nuclear ribonucleoprotein complex	pre-mRNA 3'-splice site binding|second spliceosomal transesterification activity|zinc ion binding			ovary(1)	1	Renal(175;0.00196)	Medulloblastoma(196;0.0354)|all_neural(177;0.116)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			ACTGCTCTTTCGATGcttctt	0.269													16	104					0	0	0	0
HIST1H2BH	8345	broad.mit.edu	37	6	26251971	26251971	+	Silent	SNP	A	G	G			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr6:26251971A>G	uc003nhh.2	+	1	93	c.93A>G	c.(91-93)AAA>AAG	p.K31K	HIST1H3F_uc003nhg.1_5'Flank	NM_003524	NP_003515	Q93079	H2B1H_HUMAN	histone cluster 1, H2bh	31					nucleosome assembly	nucleosome|nucleus	DNA binding			ovary(3)	3						AGAAGCGTAAACGCAGCCGCA	0.557													62	206					0	0	0	0
TRIM39	56658	broad.mit.edu	37	6	30309645	30309645	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr6:30309645C>T	uc010jrz.2	+	9	1478	c.1166C>T	c.(1165-1167)ACC>ATC	p.T389I	TRIM39_uc003npz.2_Missense_Mutation_p.T359I|TRIM39_uc003nqb.2_Missense_Mutation_p.T359I|TRIM39_uc003nqc.2_Missense_Mutation_p.T359I|TRIM39_uc010jsa.1_Missense_Mutation_p.T359I	NM_021253	NP_067076	Q9HCM9	TRI39_HUMAN	tripartite motif-containing 39 isoform 1	389	B30.2/SPRY.				apoptosis	cytosol|mitochondrion	identical protein binding|zinc ion binding			ovary(3)	3						GAGGGTTTCACCTCAGGTCGA	0.592													22	94					0	0	0	0
HLA-C	3107	broad.mit.edu	37	6	31238903	31238903	+	Missense_Mutation	SNP	A	T	T			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr6:31238903A>T	uc003nsy.2	-	3	573	c.566T>A	c.(565-567)GTG>GAG	p.V189E	HLA-C_uc011dnj.1_Missense_Mutation_p.V161E|HLA-C_uc003nsx.2_Missense_Mutation_p.V68E|HLA-C_uc003nsz.2_Missense_Mutation_p.V189E|HLA-C_uc010jsl.2_Missense_Mutation_p.V189E|HLA-C_uc003nta.2_Missense_Mutation_p.V189E|HLA-C_uc003ntb.2_Intron|HLA-C_uc003ntc.1_Intron|HLA-B_uc010jsm.1_Intron|HLA-B_uc011dnk.1_Intron|HLA-C_uc011dnl.1_Missense_Mutation_p.V68E|HLA-B_uc003ntf.2_Missense_Mutation_p.V189E	NM_002117	NP_002108	Q9TNN7	1C05_HUMAN	major histocompatibility complex, class I, C	189	Extracellular (Potential).|Alpha-2.				antigen processing and presentation of peptide antigen via MHC class I|interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|regulation of immune response|type I interferon-mediated signaling pathway	integral to membrane|MHC class I protein complex					0						GAGCCACTCCACGCACGTGCC	0.677													4	65					0	0	0	0
MRPS10	55173	broad.mit.edu	37	6	42185571	42185571	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr6:42185571G>A	uc003osa.3	-	1	63	c.17C>T	c.(16-18)GCG>GTG	p.A6V	MRPS10_uc011dup.1_5'UTR	NM_018141	NP_060611	P82664	RT10_HUMAN	mitochondrial ribosomal protein S10	6					translation	actin cytoskeleton|mitochondrion|ribosome	structural constituent of ribosome				0	Colorectal(47;0.196)		Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)|Epithelial(12;0.00528)			AGCACCGAACGCTGTCCGCGC	0.597													12	53					0	0	0	0
TMEM63B	55362	broad.mit.edu	37	6	44117677	44117677	+	Missense_Mutation	SNP	G	T	T			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr6:44117677G>T	uc003owr.2	+	16	1559	c.1495G>T	c.(1495-1497)GCC>TCC	p.A499S	TMEM63B_uc003ows.2_Missense_Mutation_p.A402S|TMEM63B_uc010jyz.2_RNA	NM_018426	NP_060896	Q5T3F8	TM63B_HUMAN	transmembrane protein 63B	499	Helical; (Potential).					integral to membrane	nucleotide binding|protein binding			pancreas(2)|central_nervous_system(1)	3	all_cancers(18;1.66e-06)|Lung NSC(15;0.00108)|all_lung(25;0.00278)|Hepatocellular(11;0.00309)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0215)			CTACTACTCAGCCTTCTTTGA	0.602													11	23					1.41608e-15	1.75079e-15	1	0
KCNQ5	56479	broad.mit.edu	37	6	73900382	73900382	+	Missense_Mutation	SNP	C	A	A			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr6:73900382C>A	uc003pgk.2	+	12	2011	c.1664C>A	c.(1663-1665)GCT>GAT	p.A555D	KCNQ5_uc011dyh.1_Missense_Mutation_p.A574D|KCNQ5_uc011dyi.1_Missense_Mutation_p.A565D|KCNQ5_uc010kat.2_Missense_Mutation_p.A546D|KCNQ5_uc011dyj.1_Missense_Mutation_p.A445D|KCNQ5_uc011dyk.1_Missense_Mutation_p.A305D	NM_019842	NP_062816	Q9NR82	KCNQ5_HUMAN	potassium voltage-gated channel, KQT-like	555					protein complex assembly|synaptic transmission	voltage-gated potassium channel complex	inward rectifier potassium channel activity			ovary(4)|large_intestine(2)|skin(1)	7		all_epithelial(107;0.116)|Lung NSC(302;0.219)		COAD - Colon adenocarcinoma(1;0.0107)|Colorectal(1;0.0583)		CAATATTCTGCTGGTCATCTG	0.353													29	81					1.16021e-09	1.37207e-09	1	0
FAM71F1	84691	broad.mit.edu	37	7	128359088	128359088	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr7:128359088C>T	uc003vno.1	+	3	691	c.638C>T	c.(637-639)ACG>ATG	p.T213M	FAM71F1_uc010llo.1_Missense_Mutation_p.T114M|FAM71F1_uc011koq.1_Missense_Mutation_p.T105M|FAM71F1_uc003vnm.1_RNA|FAM71F1_uc003vnn.1_Missense_Mutation_p.T114M|FAM71F1_uc010llp.1_RNA|FAM71F1_uc003vnp.1_Missense_Mutation_p.T213M	NM_032599	NP_115988	Q96KD3	F71F1_HUMAN	testes development-related NYD-SP18	213										skin(1)	1						ATTCTTGTCACGCACTGCCTG	0.537													5	214					0	0	0	0
PLXNA4	91584	broad.mit.edu	37	7	132192727	132192727	+	Silent	SNP	G	T	T			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr7:132192727G>T	uc003vra.3	-	2	955	c.726C>A	c.(724-726)ATC>ATA	p.I242I	PLXNA4_uc003vrc.2_Silent_p.I242I|PLXNA4_uc003vrb.2_Silent_p.I242I	NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	242	Extracellular (Potential).|Sema.					integral to membrane|intracellular|plasma membrane				ovary(1)	1						AGACATAGTAGATATCAAAGT	0.498													20	89					1.01871e-10	1.22606e-10	1	0
TBXAS1	6916	broad.mit.edu	37	7	139636105	139636105	+	Missense_Mutation	SNP	A	T	T			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr7:139636105A>T	uc011kqv.1	+	5	616	c.452A>T	c.(451-453)GAG>GTG	p.E151V	TBXAS1_uc003vvh.2_Missense_Mutation_p.E151V|TBXAS1_uc010lne.2_Missense_Mutation_p.E83V|TBXAS1_uc011kqu.1_Missense_Mutation_p.E102V|TBXAS1_uc003vvi.2_Missense_Mutation_p.E151V|TBXAS1_uc003vvj.2_Missense_Mutation_p.E151V|TBXAS1_uc011kqw.1_Missense_Mutation_p.E131V	NM_001130966	NP_001124438	P24557	THAS_HUMAN	thromboxane A synthase 1, platelet isoform	150	Cytoplasmic (Potential).				hormone biosynthetic process|prostaglandin biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum lumen|endoplasmic reticulum membrane|integral to membrane	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen|thromboxane-A synthase activity			ovary(2)|breast(1)	3	Melanoma(164;0.0142)					AAGCTGAACGAGGTAAGACAT	0.473													92	288					0	0	0	0
EPHA1	2041	broad.mit.edu	37	7	143088775	143088775	+	Nonsense_Mutation	SNP	G	T	T			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr7:143088775G>T	uc003wcz.2	-	17	2877	c.2790C>A	c.(2788-2790)TAC>TAA	p.Y930*		NM_005232	NP_005223	P21709	EPHA1_HUMAN	ephrin receptor EphA1 precursor	930	SAM.|Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			ovary(3)|lung(1)|breast(1)	5	Melanoma(164;0.205)	Myeloproliferative disorder(862;0.0255)				AGTGCAGGATGTAGCGTTTCA	0.607													13	41					1.02788e-11	1.25939e-11	1	0
WDR67	93594	broad.mit.edu	37	8	124156985	124156985	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr8:124156985G>A	uc003ypp.1	+	20	2954	c.2864G>A	c.(2863-2865)CGT>CAT	p.R955H	WDR67_uc011lig.1_Missense_Mutation_p.R859H|WDR67_uc011lih.1_Missense_Mutation_p.R845H|WDR67_uc003ypq.1_RNA|WDR67_uc003yps.1_Missense_Mutation_p.R589H|WDR67_uc003ypt.1_Missense_Mutation_p.R347H|WDR67_uc003ypu.1_Missense_Mutation_p.R347H	NM_145647	NP_663622	Q96DN5	WDR67_HUMAN	WD repeat domain 67 isoform 1	955						centrosome	Rab GTPase activator activity			skin(1)	1	Lung NSC(37;7e-10)|Ovarian(258;0.0205)		STAD - Stomach adenocarcinoma(47;0.00527)			AAAGAGTTCCGTTTGAGATCA	0.358													24	101					0	0	0	0
ADCY8	114	broad.mit.edu	37	8	131949376	131949376	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr8:131949376C>T	uc003ytd.3	-	5	1680	c.1424G>A	c.(1423-1425)CGC>CAC	p.R475H	ADCY8_uc010mds.2_Missense_Mutation_p.R475H	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	475	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			ATGGTCCTGGCGGGGCTCAGG	0.507										HNSCC(32;0.087)			25	131					0	0	0	0
PTK2	5747	broad.mit.edu	37	8	141678371	141678371	+	Silent	SNP	C	T	T			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr8:141678371C>T	uc003yvu.2	-	30	3092	c.2862G>A	c.(2860-2862)GTG>GTA	p.V954V	PTK2_uc011ljp.1_Silent_p.V262V|PTK2_uc003yvo.2_Silent_p.V582V|PTK2_uc011ljq.1_Silent_p.V652V|PTK2_uc003yvp.2_Silent_p.V622V|PTK2_uc003yvq.2_Silent_p.V459V|PTK2_uc003yvr.2_Silent_p.V897V|PTK2_uc003yvs.2_Silent_p.V908V|PTK2_uc003yvt.2_Silent_p.V976V|PTK2_uc003yvv.2_Silent_p.V857V|PTK2_uc011ljr.1_Silent_p.V967V	NM_153831	NP_722560	Q05397	FAK1_HUMAN	PTK2 protein tyrosine kinase 2 isoform a	954	Interaction with TGFB1I1.|Interaction with RGNEF (By similarity).				axon guidance|blood coagulation|cellular component disassembly involved in apoptosis|ephrin receptor signaling pathway|growth hormone receptor signaling pathway|integrin-mediated signaling pathway|peptidyl-tyrosine phosphorylation|protein autophosphorylation|regulation of cell adhesion mediated by integrin|signal complex assembly	cytoskeleton|cytosol|focal adhesion	ATP binding|JUN kinase binding|non-membrane spanning protein tyrosine kinase activity|SH2 domain binding|signal transducer activity			ovary(2)|lung(2)|central_nervous_system(1)|skin(1)	6	all_cancers(97;1.05e-15)|all_epithelial(106;2.09e-14)|Lung NSC(106;1.61e-06)|all_lung(105;2.5e-06)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)	Ovarian(118;2.72e-05)|Breast(495;0.159)	BRCA - Breast invasive adenocarcinoma(115;0.137)			ATTTTACCTTCACCATAGGGA	0.488											OREG0019022	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	22	83					0	0	0	0
PTK2	5747	broad.mit.edu	37	8	141856357	141856357	+	Splice_Site	SNP	A	G	G			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr8:141856357A>G	uc003yvu.2	-	7	823	c.593_splice	c.e7+1	p.E198_splice	PTK2_uc003yvq.2_Intron|PTK2_uc003yvr.2_Splice_Site_p.E97_splice|PTK2_uc003yvs.2_Splice_Site_p.E198_splice|PTK2_uc003yvt.2_Splice_Site_p.E220_splice|PTK2_uc003yvv.2_Splice_Site_p.E85_splice|PTK2_uc011ljr.1_Splice_Site_p.E198_splice	NM_153831	NP_722560	Q05397	FAK1_HUMAN	PTK2 protein tyrosine kinase 2 isoform a						axon guidance|blood coagulation|cellular component disassembly involved in apoptosis|ephrin receptor signaling pathway|growth hormone receptor signaling pathway|integrin-mediated signaling pathway|peptidyl-tyrosine phosphorylation|protein autophosphorylation|regulation of cell adhesion mediated by integrin|signal complex assembly	cytoskeleton|cytosol|focal adhesion	ATP binding|JUN kinase binding|non-membrane spanning protein tyrosine kinase activity|SH2 domain binding|signal transducer activity			ovary(2)|lung(2)|central_nervous_system(1)|skin(1)	6	all_cancers(97;1.05e-15)|all_epithelial(106;2.09e-14)|Lung NSC(106;1.61e-06)|all_lung(105;2.5e-06)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)	Ovarian(118;2.72e-05)|Breast(495;0.159)	BRCA - Breast invasive adenocarcinoma(115;0.137)			TACAATACTTACTCTAATACT	0.303													27	124					0	0	0	0
KIF27	55582	broad.mit.edu	37	9	86482718	86482718	+	Missense_Mutation	SNP	G	A	A	rs3199677	by1000genomes	TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr9:86482718G>A	uc004ana.2	-	13	2959	c.2815C>T	c.(2815-2817)CGC>TGC	p.R939C	KIF27_uc010mpw.2_Missense_Mutation_p.R873C|KIF27_uc010mpx.2_Intron	NM_017576	NP_060046	Q86VH2	KIF27_HUMAN	kinesin family member 27	939	Potential.				cilium assembly|microtubule-based movement	cilium|cytoplasm|microtubule	ATP binding|microtubule motor activity			lung(4)|skin(1)	5						AATTCTTGGCGTTGGTTCAGA	0.373													18	158					0	0	0	0
SCAI	286205	broad.mit.edu	37	9	127734036	127734036	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr9:127734036C>T	uc004bpe.2	-	16	1568	c.1487G>A	c.(1486-1488)CGC>CAC	p.R496H	SCAI_uc004bpd.2_Missense_Mutation_p.R519H|SCAI_uc010mwu.2_RNA	NM_001144877	NP_001138349	Q8N9R8	SCAI_HUMAN	suppressor of cancer cell invasion isoform 2	496					negative regulation of cell migration|negative regulation of Rho protein signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|integral to membrane|nucleus	protein binding|transcription corepressor activity			ovary(2)|breast(2)|central_nervous_system(1)	5						TAGGCCTCTGCGCATGCTTGA	0.423													53	163					0	0	0	0
TDGF3	6998	broad.mit.edu	37	X	109764228	109764228	+	RNA	SNP	C	T	T			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chrX:109764228C>T	uc004eos.1	+	1		c.689C>T				NR_002718				Human (clone CR-3) teratocarcinoma-derived growth factor 3 (TDGF3) mRNA, complete cds.												0						CTGGGGAACGCGAATTTCTCA	0.468													8	11					0	0	0	0
XIAP	331	broad.mit.edu	37	X	123040864	123040864	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chrX:123040864C>T	uc010nqu.2	+	7	1453	c.1327C>T	c.(1327-1329)CGC>TGC	p.R443C	XIAP_uc004etx.2_Missense_Mutation_p.R443C|XIAP_uc010nqv.2_Missense_Mutation_p.R69C	NM_001167	NP_001158	P98170	XIAP_HUMAN	baculoviral IAP repeat-containing protein 4	443					anti-apoptosis|apoptosis|induction of apoptosis by intracellular signals|response to DNA damage stimulus	cytosol	caspase inhibitor activity|ligase activity|protein binding|zinc ion binding			ovary(1)|lung(1)	2						GCAGCTAAGGCGCCTGCAAGA	0.323									X-linked_Lymphoproliferative_syndrome				37	33					0	0	0	0
DCAF12L1	139170	broad.mit.edu	37	X	125685920	125685920	+	Silent	SNP	C	T	T			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chrX:125685920C>T	uc004eul.2	-	1	923	c.672G>A	c.(670-672)CCG>CCA	p.P224P		NM_178470	NP_848565	Q5VU92	DC121_HUMAN	DDB1 and CUL4 associated factor 12-like 1	224	WD 2.									skin(3)|ovary(1)	4						CGAACTTGTCCGGGTCCATCC	0.642													33	33					0	0	0	0
ARHGAP36	158763	broad.mit.edu	37	X	130215772	130215772	+	Missense_Mutation	SNP	C	G	G			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chrX:130215772C>G	uc004evz.2	+	2	478	c.133C>G	c.(133-135)CGC>GGC	p.R45G	ARHGAP36_uc004ewa.2_Missense_Mutation_p.R33G|ARHGAP36_uc004ewb.2_Missense_Mutation_p.R14G|ARHGAP36_uc004ewc.2_5'Flank	NM_144967	NP_659404	Q6ZRI8	RHG36_HUMAN	hypothetical protein LOC158763 precursor	45					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(3)	3						CAACCCCGACCGCAGGACGAA	0.547													73	143					0	0	0	0
EPHA2	1969	broad.mit.edu	37	1	16461022	16461023	+	Frame_Shift_Ins	INS	-	A	A			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr1:16461022_16461023insA	uc001aya.1	-	8	1759_1760	c.1622_1623insT	c.(1621-1623)GTGfs	p.V541fs		NM_004431	NP_004422	P29317	EPHA2_HUMAN	ephrin receptor EphA2 precursor	541	Helical; (Potential).				activation of Rac GTPase activity|angiogenesis|apoptosis|cell chemotaxis|negative regulation of protein kinase B signaling cascade|positive regulation of establishment of protein localization in plasma membrane|protein kinase B signaling cascade|regulation of blood vessel endothelial cell migration|regulation of cell adhesion mediated by integrin|regulation of lamellipodium assembly|response to growth factor stimulus	focal adhesion|integral to plasma membrane|lamellipodium membrane|ruffle membrane	ATP binding|ephrin receptor activity|protein binding			lung(3)|central_nervous_system(3)|stomach(2)|ovary(2)	10		Colorectal(325;3.46e-05)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0181)|Colorectal(212;3.63e-07)|COAD - Colon adenocarcinoma(227;2.25e-05)|BRCA - Breast invasive adenocarcinoma(304;9.58e-05)|Kidney(64;0.000175)|KIRC - Kidney renal clear cell carcinoma(64;0.00261)|STAD - Stomach adenocarcinoma(313;0.00669)|READ - Rectum adenocarcinoma(331;0.0649)	Dasatinib(DB01254)	CACCGACAGCCACGCCGCCAAT	0.594													---	---	---							
Unknown	0	broad.mit.edu	37	1	242995203	242995204	+	IGR	INS	-	GAAA	GAAA	rs10926878	by1000genomes	TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr1:242995203_242995204insGAAA								PLD5 (307205 upstream) : CEP170 (292527 downstream)																							aaggaaggaaggaaggaaggag	0.000													---	---	---							
Unknown	0	broad.mit.edu	37	10	32391368	32391368	+	IGR	DEL	T	-	-			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr10:32391368delT								KIF5B (45997 upstream) : EPC1 (166491 downstream)																							CACCTATGTCTTTTTTTTTTT	0.353													---	---	---							
Unknown	0	broad.mit.edu	37	11	21747091	21747096	+	IGR	DEL	TGTGTT	-	-	rs141589228	by1000genomes	TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr11:21747091_21747096delTGTGTT								NELL1 (149864 upstream) : ANO5 (467626 downstream)																							tgtgtgtgtgtgtgtttgtgtgtttg	0.000													---	---	---							
Unknown	0	broad.mit.edu	37	11	49100260	49100261	+	IGR	INS	-	TTTC	TTTC	rs146682587	by1000genomes	TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr11:49100260_49100261insTTTC								OR4A47 (588988 upstream) : FOLH1 (67927 downstream)																							ccttctttctttttctttcttt	0.000													---	---	---							
Unknown	0	broad.mit.edu	37	12	106252430	106252431	+	IGR	INS	-	TG	TG	rs34932541		TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr12:106252430_106252431insTG								C12orf75 (487135 upstream) : NUAK1 (204694 downstream)																							gtgtgtgtttatgtgtgtgtgt	0.243													---	---	---							
Unknown	0	broad.mit.edu	37	13	74993520	74993535	+	5'Flank	DEL	CTTCCTTCCTTCCTTT	-	-	rs141656485	by1000genomes	TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr13:74993520_74993535delCTTCCTTCCTTCCTTT	uc001vjj.1	-											Homo sapiens cDNA FLJ35839 fis, clone TESTI2006659.																		ccctcccttccttccttccttcctttcttccttcct	0.000													---	---	---							
Unknown	0	broad.mit.edu	37	16	32437251	32437252	+	IGR	INS	-	C	C			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr16:32437251_32437252insC								HERC2P4 (273377 upstream) : TP53TG3B (247589 downstream)																							GACATTTTTTTCAAAATATTAA	0.282													---	---	---							
CDYL2	124359	broad.mit.edu	37	16	80646543	80646543	+	Frame_Shift_Del	DEL	G	-	-			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr16:80646543delG	uc002ffs.2	-	5	1303	c.1198delC	c.(1198-1200)CAGfs	p.Q400fs		NM_152342	NP_689555	Q8N8U2	CDYL2_HUMAN	chromodomain protein, Y-like 2	400						nucleus	catalytic activity|protein binding			central_nervous_system(1)	1						CCCAGGATCTGGGGGAAGGTG	0.627													---	---	---							
Unknown	0	broad.mit.edu	37	17	10647269	10647270	+	IGR	INS	-	CTTC	CTTC	rs139049457	by1000genomes	TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr17:10647269_10647270insCTTC								TMEM220 (13623 upstream) : PIRT (78523 downstream)																							tccctccttctcttccttcctt	0.158													---	---	---							
Unknown	0	broad.mit.edu	37	17	62371110	62371110	+	IGR	DEL	A	-	-	rs111736552		TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr17:62371110delA								TEX2 (30457 upstream) : PECAM1 (28754 downstream)																							ggaaggaaggaaggaaggaag	0.010													---	---	---							
Unknown	0	broad.mit.edu	37	17	62932554	62932555	+	IGR	INS	-	GTGT	GTGT	rs145593291	by1000genomes	TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr17:62932554_62932555insGTGT								LRRC37A3 (16968 upstream) : AMZ2P1 (30113 downstream)																							tgtgtgtgttcgtgtgtgtgtg	0.233													---	---	---							
Unknown	0	broad.mit.edu	37	19	31443058	31443059	+	IGR	INS	-	CTCC	CTCC	rs144141390	by1000genomes	TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr19:31443058_31443059insCTCC								ZNF536 (394093 upstream) : DKFZp566F0947 (197724 downstream)																							tccctccctctctccctccctc	0.005													---	---	---							
SLC7A10	56301	broad.mit.edu	37	19	33717095	33717104	+	5'Flank	DEL	TGTGTGTGTG	-	-	rs3064210		TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr19:33717095_33717104delTGTGTGTGTG	uc002num.2	-						SLC7A10_uc010xrq.1_5'Flank	NM_019849	NP_062823	Q9NS82	AAA1_HUMAN	solute carrier family 7, member 10						blood coagulation|cellular nitrogen compound metabolic process|ion transport|leukocyte migration	integral to plasma membrane	L-serine transmembrane transporter activity			ovary(1)|central_nervous_system(1)	2	Esophageal squamous(110;0.137)					GCCTGCACGAtgtgtgtgtgtgtgtgtgtg	0.357													---	---	---							
Unknown	0	broad.mit.edu	37	22	23915257	23915257	+	IGR	DEL	C	-	-	rs67279093		TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr22:23915257delC								ZDHHC8P1 (170458 upstream) : IGLL1 (58 downstream)																							ACACTGAGAACCCAGGAGAAG	0.502													---	---	---							
FAM194A	131831	broad.mit.edu	37	3	150421899	150421900	+	5'Flank	INS	-	C	C	rs148177227	by1000genomes	TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr3:150421899_150421900insC	uc003eyg.2	-						FAM194A_uc003eyh.2_5'Flank	NM_152394	NP_689607	Q7L0X2	F194A_HUMAN	hypothetical protein LOC131831											skin(2)|ovary(1)	3						TTCTGTCCCTGCTCTTCAGCGT	0.545													---	---	---							
Unknown	0	broad.mit.edu	37	4	46725773	46725775	+	IGR	DEL	GTT	-	-	rs80135740		TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr4:46725773_46725775delGTT								GABRA2 (333352 upstream) : COX7B2 (11074 downstream)																							ttttttcttggtttttttttttt	0.340													---	---	---							
Unknown	0	broad.mit.edu	37	4	46725774	46725774	+	IGR	DEL	T	-	-			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr4:46725774delT								GABRA2 (333353 upstream) : COX7B2 (11075 downstream)																							tttttcttggttttttttttt	0.343													---	---	---							
Unknown	0	broad.mit.edu	37	4	88180872	88180872	+	IGR	DEL	C	-	-	rs33959164		TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr4:88180872delC								KLHL8 (39198 upstream) : HSD17B13 (44069 downstream)																							ttctttctttctttttttttt	0.005													---	---	---							
PCDHGB4	8641	broad.mit.edu	37	5	140767492	140767497	+	In_Frame_Del	DEL	TGCCAG	-	-			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr5:140767492_140767497delTGCCAG	uc003lkc.1	+	1	41_46	c.41_46delTGCCAG	c.(40-48)CTGCCAGTG>CTG	p.PV15del	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc011dav.1_In_Frame_Del_p.PV15del	NM_003736	NP_003727	Q9UN71	PCDGG_HUMAN	protocadherin gamma subfamily B, 4 isoform 1	15_16					calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCTGAGAGGCTGCCAGTGCTCTTTCT	0.617											OREG0016859	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	---	---	---							
Unknown	0	broad.mit.edu	37	6	142790745	142790746	+	IGR	DEL	AC	-	-	rs150002640		TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr6:142790745_142790746delAC								GPR126 (23344 upstream) : LOC153910 (56846 downstream)																							gCTTCTTGATacacacacacac	0.045													---	---	---							
Unknown	0	broad.mit.edu	37	6	156227574	156227577	+	IGR	DEL	TCTC	-	-			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr6:156227574_156227577delTCTC								NOX3 (450537 upstream) : MIR1202 (40354 downstream)																							tttccttccttctctctctctttc	0.172													---	---	---							
Unknown	0	broad.mit.edu	37	6	160133097	160133113	+	IGR	DEL	CTCGGCTGCTCAGACCT	-	-	rs71551146		TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr6:160133097_160133113delCTCGGCTGCTCAGACCT								SOD2 (18744 upstream) : WTAP (15016 downstream)																							ataaccaccacTCGGCTGCTCAGacctccataaccac	0.074													---	---	---							
MAFA	389692	broad.mit.edu	37	8	144511954	144511956	+	In_Frame_Del	DEL	TGG	-	-			TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chr8:144511954_144511956delTGG	uc003yyc.1	-	1	621_623	c.621_623delCCA	c.(619-624)CACCAT>CAT	p.207_208HH>H		NM_201589	NP_963883	Q8NHW3	MAFA_HUMAN	v-maf musculoaponeurotic fibrosarcoma oncogene	207_208	His-rich.				insulin secretion|nitric oxide mediated signal transduction|response to glucose stimulus	nucleus	protein heterodimerization activity|protein homodimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	all_cancers(97;7.39e-11)|all_epithelial(106;5.44e-09)|Lung NSC(106;0.000167)|all_lung(105;0.000459)|Ovarian(258;0.0212)|Acute lymphoblastic leukemia(118;0.155)		Colorectal(110;0.107)|BRCA - Breast invasive adenocarcinoma(115;0.237)			CGCGCCGCCAtggtggtggtggt	0.581										HNSCC(29;0.082)			---	---	---							
Unknown	0	broad.mit.edu	37	X	135181861	135181862	+	IGR	DEL	TC	-	-	rs72229800		TCGA-CN-4726-01A-01D-1434-08	TCGA-CN-4726-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	2201e681-a727-4fd2-adec-cbcb543b2232	8aec558c-7b7e-47dd-b84f-db6dabacbd12	g.chrX:135181861_135181862delTC								SLC9A6 (52435 upstream) : FHL1 (46999 downstream)																							tttctttctttctctctctctc	0.050													---	---	---							
