Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
CHD5	26038	broad.mit.edu	37	1	6172219	6172219	+	Silent	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr1:6172219G>A	uc001amb.1	-	35	5221	c.5121C>T	c.(5119-5121)ATC>ATT	p.I1707I	CHD5_uc001alz.1_Silent_p.I564I|CHD5_uc001ama.1_RNA	NM_015557	NP_056372	Q8TDI0	CHD5_HUMAN	chromodomain helicase DNA binding protein 5	1707					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|DNA binding|zinc ion binding			central_nervous_system(3)|breast(3)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)|skin(1)|pancreas(1)	12	Ovarian(185;0.0634)	all_cancers(23;5.36e-32)|all_epithelial(116;2.32e-17)|all_neural(13;3.68e-06)|all_lung(118;3.94e-06)|all_hematologic(16;2.39e-05)|Lung NSC(185;5.33e-05)|Acute lymphoblastic leukemia(12;0.000372)|Glioma(11;0.00127)|Renal(390;0.00188)|Colorectal(325;0.00342)|Breast(487;0.00373)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.15)		Epithelial(90;3.08e-37)|GBM - Glioblastoma multiforme(13;1.36e-31)|OV - Ovarian serous cystadenocarcinoma(86;7.7e-19)|Colorectal(212;9.97e-08)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(185;6.16e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.00109)|BRCA - Breast invasive adenocarcinoma(365;0.0012)|STAD - Stomach adenocarcinoma(132;0.00346)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.193)		CCCCGTCCGCGATGTTGAACA	0.517													7	32					0	0	0.00198382	0	0
CHD5	26038	broad.mit.edu	37	1	6202348	6202348	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr1:6202348G>A	uc001amb.1	-	15	2376	c.2276C>T	c.(2275-2277)TCC>TTC	p.S759F	CHD5_uc001ama.1_RNA|CHD5_uc001amc.1_RNA	NM_015557	NP_056372	Q8TDI0	CHD5_HUMAN	chromodomain helicase DNA binding protein 5	759	Helicase ATP-binding.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|DNA binding|zinc ion binding			central_nervous_system(3)|breast(3)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)|skin(1)|pancreas(1)	12	Ovarian(185;0.0634)	all_cancers(23;5.36e-32)|all_epithelial(116;2.32e-17)|all_neural(13;3.68e-06)|all_lung(118;3.94e-06)|all_hematologic(16;2.39e-05)|Lung NSC(185;5.33e-05)|Acute lymphoblastic leukemia(12;0.000372)|Glioma(11;0.00127)|Renal(390;0.00188)|Colorectal(325;0.00342)|Breast(487;0.00373)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.15)		Epithelial(90;3.08e-37)|GBM - Glioblastoma multiforme(13;1.36e-31)|OV - Ovarian serous cystadenocarcinoma(86;7.7e-19)|Colorectal(212;9.97e-08)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(185;6.16e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.00109)|BRCA - Breast invasive adenocarcinoma(365;0.0012)|STAD - Stomach adenocarcinoma(132;0.00346)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.193)		GATGATGGTGGAGAGGGGCGC	0.642													7	43					0	0	0.000157383	0	0
TNFRSF8	943	broad.mit.edu	37	1	12175638	12175638	+	Missense_Mutation	SNP	C	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr1:12175638C>A	uc001atq.2	+	8	1020	c.798C>A	c.(796-798)GAC>GAA	p.D266E	TNFRSF8_uc010obc.1_Missense_Mutation_p.D155E	NM_001243	NP_001234	P28908	TNR8_HUMAN	tumor necrosis factor receptor superfamily,	266	TNFR-Cys 5.|Extracellular (Potential).				cellular response to mechanical stimulus|negative regulation of cell proliferation|positive regulation of apoptosis|positive regulation of TRAIL biosynthetic process|positive regulation of tumor necrosis factor biosynthetic process	cytoplasm|integral to membrane|plasma membrane				skin(2)|ovary(1)|pancreas(1)|central_nervous_system(1)	5	Ovarian(185;0.249)	Lung NSC(185;8.71e-05)|all_lung(284;9.89e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.66e-06)|COAD - Colon adenocarcinoma(227;0.000261)|BRCA - Breast invasive adenocarcinoma(304;0.000304)|Kidney(185;0.000777)|KIRC - Kidney renal clear cell carcinoma(229;0.00261)|STAD - Stomach adenocarcinoma(313;0.0073)|READ - Rectum adenocarcinoma(331;0.0649)		CCTTAGATGACCTTGTGGAGA	0.572													7	92					2.17888e-05	8.59305e-05	0.000442599	1	0
PRAMEF1	65121	broad.mit.edu	37	1	12855615	12855615	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr1:12855615G>A	uc001auj.1	+	4	998	c.895G>A	c.(895-897)GAA>AAA	p.E299K		NM_023013	NP_075389	O95521	PRAM1_HUMAN	PRAME family member 1	299											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		GGAGAACTTGGAATTAACTTA	0.463													11	86					0	0	0.000978159	0	0
MST1P2	11209	broad.mit.edu	37	1	16976345	16976345	+	RNA	SNP	T	C	C	rs139809665	by1000genomes	TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr1:16976345T>C	uc010och.1	+	13		c.2190T>C			MST1P2_uc001azl.3_RNA|MST1P2_uc009vox.2_RNA|MST1P2_uc001azm.3_RNA	NR_027504				Homo sapiens cDNA FLJ43241 fis, clone HEART1000010, weakly  similar to Hepatocyte growth factor-like protein precursor.												0						CCTTGCTGAATGTCATCTCCA	0.582													4	68					0	0	0.000602214	0	0
PLA2G5	5322	broad.mit.edu	37	1	20417110	20417110	+	Silent	SNP	C	T	T	rs144012929		TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr1:20417110C>T	uc001bcy.2	+	5	610	c.342C>T	c.(340-342)CTC>CTT	p.L114L	PLA2G5_uc001bcw.2_RNA|PLA2G5_uc001bcx.2_Silent_p.L145L	NM_000929	NP_000920	P39877	PA2G5_HUMAN	phospholipase A2, group V precursor	114					lipid catabolic process	extracellular region	calcium ion binding|calcium-dependent phospholipase A2 activity	p.L114L(1)		skin(1)	1		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000249)|Lung NSC(340;0.000287)|Breast(348;0.000812)|Ovarian(437;0.00328)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0182)|COAD - Colon adenocarcinoma(152;1.22e-05)|BRCA - Breast invasive adenocarcinoma(304;8.15e-05)|Kidney(64;0.000184)|GBM - Glioblastoma multiforme(114;0.00089)|KIRC - Kidney renal clear cell carcinoma(64;0.0027)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0652)		ACCGGAAGCTCGTCTACTGCC	0.567													7	78					0	0	0.00198382	0	0
ECE1	1889	broad.mit.edu	37	1	21551766	21551766	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr1:21551766C>T	uc001bek.2	-	17	2092	c.2017G>A	c.(2017-2019)GGG>AGG	p.G673R	ECE1_uc001bem.2_Missense_Mutation_p.G657R|ECE1_uc001bej.2_Missense_Mutation_p.G661R|ECE1_uc001bei.2_Missense_Mutation_p.G670R|ECE1_uc010odl.1_Missense_Mutation_p.G673R	NM_001397	NP_001388	P42892	ECE1_HUMAN	endothelin converting enzyme 1 isoform 1	673	Extracellular (Potential).				bradykinin catabolic process|calcitonin catabolic process|ear development|embryonic digit morphogenesis|endothelin maturation|heart development|positive regulation of receptor recycling|substance P catabolic process	early endosome|external side of plasma membrane|integral to membrane|intrinsic to endosome membrane|membrane fraction|perinuclear region of cytoplasm|plasma membrane|Weibel-Palade body	metal ion binding|metalloendopeptidase activity|protein homodimerization activity			ovary(2)|skin(1)	3		Lung NSC(340;1.14e-05)|all_lung(284;1.23e-05)|Colorectal(325;3.46e-05)|Renal(390;9.67e-05)|Breast(348;0.00147)|Ovarian(437;0.00432)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0183)|OV - Ovarian serous cystadenocarcinoma(117;4.83e-27)|COAD - Colon adenocarcinoma(152;1.36e-06)|GBM - Glioblastoma multiforme(114;1.47e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000162)|STAD - Stomach adenocarcinoma(196;0.00326)|KIRC - Kidney renal clear cell carcinoma(1967;0.00755)|READ - Rectum adenocarcinoma(331;0.0678)|Lung(427;0.206)		TTGAGACCCCCGTTGTCGGCG	0.647													5	49					0	0	0.00116845	0	0
TRIM63	84676	broad.mit.edu	37	1	26384907	26384907	+	Missense_Mutation	SNP	C	T	T	rs61749355	byFrequency	TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr1:26384907C>T	uc001bli.1	-	5	941	c.805G>A	c.(805-807)GAG>AAG	p.E269K		NM_032588	NP_115977	Q969Q1	TRI63_HUMAN	muscle specific ring finger protein 1	269	COS.|Potential.					cytoplasm|microtubule|nucleus	ligase activity|signal transducer activity|titin binding|zinc ion binding			kidney(1)	1		Colorectal(325;3.46e-05)|Lung NSC(340;0.000154)|all_lung(284;0.00021)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0133)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0298)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;9.15e-26)|Colorectal(126;3.16e-08)|COAD - Colon adenocarcinoma(152;1.72e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.000767)|BRCA - Breast invasive adenocarcinoma(304;0.00101)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.00655)|READ - Rectum adenocarcinoma(331;0.0649)		CCCCCAGGCTCGTCCAGGGAC	0.502													9	63					0	0	0.000274275	0	0
CD164L2	388611	broad.mit.edu	37	1	27709047	27709047	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr1:27709047C>T	uc001boc.2	-	2	275	c.199G>A	c.(199-201)GAC>AAC	p.D67N		NM_207397	NP_997280	Q6UWJ8	C16L2_HUMAN	CD164 sialomucin-like 2	67	Extracellular (Potential).					integral to membrane					0		all_lung(284;1.6e-05)|Lung NSC(340;2.92e-05)|Colorectal(325;3.46e-05)|Renal(390;0.0007)|Breast(348;0.0021)|Ovarian(437;0.0175)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0415)|OV - Ovarian serous cystadenocarcinoma(117;2.89e-26)|Colorectal(126;1.24e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00128)|KIRC - Kidney renal clear cell carcinoma(1967;0.00155)|STAD - Stomach adenocarcinoma(196;0.00303)|READ - Rectum adenocarcinoma(331;0.0419)		CGCGCTCTGTCTCCCTCCACG	0.642													8	32					0	0	0.000274275	0	0
FGR	2268	broad.mit.edu	37	1	27943786	27943786	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr1:27943786C>T	uc001boj.2	-	4	596	c.450G>A	c.(448-450)GGG>GGA	p.G150G	FGR_uc001boi.2_5'Flank|FGR_uc001bok.2_Silent_p.G150G|FGR_uc001bol.2_Silent_p.G150G|FGR_uc001bom.2_Silent_p.G150G	NM_005248	NP_005239	P09769	FGR_HUMAN	proto-oncogene tyrosine-protein kinase FGR	150	SH2.				platelet activation|response to virus	cytosol	ATP binding|non-membrane spanning protein tyrosine kinase activity			skin(2)	2		all_lung(284;2.05e-05)|Colorectal(325;3.46e-05)|Lung NSC(340;3.67e-05)|Renal(390;0.00121)|Breast(348;0.0021)|Ovarian(437;0.00503)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0416)|OV - Ovarian serous cystadenocarcinoma(117;1.25e-24)|Colorectal(126;1.24e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00244)|KIRC - Kidney renal clear cell carcinoma(1967;0.0027)|STAD - Stomach adenocarcinoma(196;0.00303)|READ - Rectum adenocarcinoma(331;0.0419)		CATCCTTTCTCCCAATCTTTC	0.532													8	43					0	0	0.000442599	0	0
DLGAP3	58512	broad.mit.edu	37	1	35369961	35369961	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr1:35369961C>T	uc001byc.2	-	1	1024	c.1024G>A	c.(1024-1026)GAT>AAT	p.D342N		NM_001080418	NP_001073887	O95886	DLGP3_HUMAN	discs, large (Drosophila) homolog-associated	342					cell-cell signaling	cell junction|postsynaptic density|postsynaptic membrane				ovary(3)	3		Myeloproliferative disorder(586;0.0393)				GGGTATCCATCCCGGCCCTGG	0.622													8	48					0	0	0.000157383	0	0
TRIT1	54802	broad.mit.edu	37	1	40312931	40312932	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr1:40312931_40312932GG>AA	uc010oiz.1	-	8	980_981	c.966_967CC>TT	c.(964-969)GCCCGG>GCTTGG	p.R323W	TRIT1_uc001cec.3_RNA|TRIT1_uc001ced.3_Missense_Mutation_p.R19W|TRIT1_uc001cee.3_RNA|TRIT1_uc001cef.3_RNA|TRIT1_uc001ceg.3_Missense_Mutation_p.R77W|TRIT1_uc001ceh.3_Missense_Mutation_p.R77W|TRIT1_uc009vvv.2_Intron|TRIT1_uc001cei.3_Missense_Mutation_p.R77W|TRIT1_uc001ceq.2_Missense_Mutation_p.R19W|TRIT1_uc001cek.2_Missense_Mutation_p.R19W|TRIT1_uc009vvx.2_Intron|TRIT1_uc001cel.2_Intron|TRIT1_uc001cem.2_Missense_Mutation_p.R241W|TRIT1_uc001cen.2_Missense_Mutation_p.R77W|TRIT1_uc001ceo.2_Missense_Mutation_p.R77W|TRIT1_uc001cep.2_Missense_Mutation_p.R77W	NM_017646	NP_060116	Q9H3H1	MOD5_HUMAN	tRNA isopentenyltransferase 1 precursor	323	Interaction with substrate tRNA (By similarity).|Interaction with substrate tRNA (By similarity).				tRNA processing	mitochondrion	ATP binding|metal ion binding|tRNA dimethylallyltransferase activity			ovary(1)	1	all_cancers(7;4.55e-14)|all_lung(5;1.23e-16)|all_epithelial(6;2.17e-16)|Lung NSC(20;7.03e-07)|Ovarian(52;0.00167)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0393)	OV - Ovarian serous cystadenocarcinoma(33;3.29e-18)|Epithelial(16;3.07e-17)|all cancers(16;6.21e-16)|LUSC - Lung squamous cell carcinoma(16;0.000261)|Lung(16;0.000457)			TTTTGTTTCCGGGCATATCTCT	0.391													6	49					0	0	6.4e-05	0	0
KIAA0467	23334	broad.mit.edu	37	1	43896717	43896717	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr1:43896717C>T	uc001cjk.1	+	18	2637	c.2175C>T	c.(2173-2175)CCC>CCT	p.P725P		NM_015284	NP_056099	Q5T011	SZT2_HUMAN	hypothetical protein LOC23334	1624						peroxisome					0	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				TGACTTTGCCCCTGGAAGTGG	0.617													5	43					0	0	0.00116845	0	0
ST3GAL3	6487	broad.mit.edu	37	1	44360079	44360080	+	Silent	DNP	CC	TT	TT			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr1:44360079_44360080CC>TT	uc001ckc.2	+	6	504_505	c.327_328CC>TT	c.(325-330)TTCCTG>TTTTTG	p.109_110FL>FL	ST3GAL3_uc009vwu.1_RNA|ST3GAL3_uc010okj.1_RNA|ST3GAL3_uc001cjz.2_Silent_p.124_125FL>FL|ST3GAL3_uc001cka.2_Silent_p.93_94FL>FL|ST3GAL3_uc001ckb.2_Silent_p.178_179FL>FL|ST3GAL3_uc001ckd.2_Silent_p.163_164FL>FL|ST3GAL3_uc001cke.2_Silent_p.93_94FL>FL|ST3GAL3_uc001ckf.2_Silent_p.147_148FL>FL|ST3GAL3_uc001ckg.2_Silent_p.109_110FL>FL|ST3GAL3_uc001ckh.2_Silent_p.124_125FL>FL|ST3GAL3_uc001cki.2_Silent_p.109_110FL>FL|ST3GAL3_uc009vwv.2_Silent_p.109_110FL>FL|ST3GAL3_uc001ckj.2_RNA|ST3GAL3_uc009vww.2_RNA|ST3GAL3_uc001ckk.2_Silent_p.78_79FL>FL|ST3GAL3_uc009vwy.2_Silent_p.15_16FL>FL|ST3GAL3_uc009vwx.2_RNA|ST3GAL3_uc001ckm.2_Silent_p.108_109FL>FL|ST3GAL3_uc001ckl.2_Silent_p.109_110FL>FL|ST3GAL3_uc009vwz.2_5'UTR|ST3GAL3_uc001ckn.2_RNA|ST3GAL3_uc001ckp.2_Silent_p.108_109FL>FL|ST3GAL3_uc001cko.2_Silent_p.93_94FL>FL|ST3GAL3_uc009vxa.2_5'UTR|ST3GAL3_uc001ckq.2_Silent_p.93_94FL>FL|ST3GAL3_uc001ckr.2_Silent_p.62_63FL>FL|ST3GAL3_uc009vxb.2_Intron	NM_006279	NP_006270	Q11203	SIAT6_HUMAN	sialyltransferase 6 isoform j	109_110	Lumenal (Potential).				protein glycosylation	extracellular region|Golgi cisterna membrane|integral to Golgi membrane	N-acetyllactosaminide alpha-2,3-sialyltransferase activity			ovary(3)	3	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0518)				CACCCATGTTCCTGGATGACTC	0.505													24	175					0	0	6.4e-05	0	0
PODN	127435	broad.mit.edu	37	1	53542943	53542943	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr1:53542943C>T	uc001cuv.2	+	6	814	c.807C>T	c.(805-807)GTC>GTT	p.V269V	PODN_uc001cuw.2_Silent_p.V250V|PODN_uc010onr.1_Silent_p.V250V|PODN_uc010ons.1_Intron	NM_153703	NP_714914	Q7Z5L7	PODN_HUMAN	podocan	221	LRR 6.				negative regulation of cell migration|negative regulation of cell proliferation	cytoplasm|extracellular space|proteinaceous extracellular matrix	collagen binding			ovary(1)|pancreas(1)	2						ACGTCGAGGTCCTCATCCTGT	0.632													12	104					0	0	0.00136819	0	0
MYSM1	114803	broad.mit.edu	37	1	59139288	59139288	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr1:59139288C>T	uc009wab.1	-	11	1552	c.1529G>A	c.(1528-1530)GGA>GAA	p.G510E	MYSM1_uc001czc.2_RNA	NM_001085487	NP_001078956	Q5VVJ2	MYSM1_HUMAN	Myb-like, SWIRM and MPN domains 1	510					histone deubiquitination|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromatin remodeling complex	DNA binding|histone binding|metal ion binding|metallopeptidase activity|transcription coactivator activity|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			skin(1)	1	all_cancers(7;9.36e-06)					ACACCAGTTTCCCCATGGGTC	0.383													6	50					0	0	0.000157383	0	0
ROR1	4919	broad.mit.edu	37	1	64643408	64643408	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr1:64643408G>A	uc001dbj.2	+	9	2083	c.1684G>A	c.(1684-1686)GAG>AAG	p.E562K	uc001dbm.2_5'Flank	NM_005012	NP_005003	Q01973	ROR1_HUMAN	receptor tyrosine kinase-like orphan receptor 1	562	Cytoplasmic (Potential).|Protein kinase.		E -> D (in a breast cancer sample; somatic mutation).		transmembrane receptor protein tyrosine kinase signaling pathway	cytoplasm|integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity|Wnt-protein binding	p.E562D(1)		ovary(6)|large_intestine(3)|breast(3)|stomach(2)|lung(2)|central_nervous_system(1)|skin(1)|kidney(1)	19						GGATCTCCATGAGTTCCTCAT	0.488													12	69					0	0	0.000978159	0	0
C1orf173	127254	broad.mit.edu	37	1	75036989	75036989	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr1:75036989C>T	uc001dgg.2	-	14	4624	c.4405G>A	c.(4405-4407)GGA>AGA	p.G1469R		NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	1469	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						TCAGCTGCTCCTGTCTCCTGC	0.582													10	96					0	0	0.00136819	0	0
ELTD1	64123	broad.mit.edu	37	1	79392765	79392765	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr1:79392765C>T	uc001diq.3	-	8	1045	c.889G>A	c.(889-891)GTT>ATT	p.V297I		NM_022159	NP_071442	Q9HBW9	ELTD1_HUMAN	EGF, latrophilin and seven transmembrane domain	297	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(1)|skin(1)	2				COAD - Colon adenocarcinoma(225;0.0905)|Colorectal(170;0.103)|all cancers(265;0.105)|Epithelial(280;0.148)		ACAAATGCAACTGCAACATTG	0.274													6	45					0	0	0.00116845	0	0
ABCA4	24	broad.mit.edu	37	1	94520779	94520779	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr1:94520779C>T	uc001dqh.2	-	16	2579	c.2475G>A	c.(2473-2475)GGG>GGA	p.G825G	ABCA4_uc010otn.1_Silent_p.G751G	NM_000350	NP_000341	P78363	ABCA4_HUMAN	ATP-binding cassette, sub-family A member 4	825					phototransduction, visible light|visual perception	integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)|skin(4)|central_nervous_system(2)|upper_aerodigestive_tract(1)|breast(1)	12		all_lung(203;0.000757)|Lung NSC(277;0.00335)		all cancers(265;0.00432)|GBM - Glioblastoma multiforme(16;0.00715)|Epithelial(280;0.171)		TGGGACTGTTCCCGATGTTGC	0.542													7	52					0	0	0.000274275	0	0
ARHGAP29	9411	broad.mit.edu	37	1	94668540	94668540	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr1:94668540C>T	uc001dqj.3	-	10	1257	c.888G>A	c.(886-888)AGG>AGA	p.R296R	ARHGAP29_uc009wdq.1_RNA|ARHGAP29_uc001dql.2_Silent_p.R296R	NM_004815	NP_004806	Q52LW3	RHG29_HUMAN	PTPL1-associated RhoGAP 1	296	Potential.				Rho protein signal transduction	cytosol	metal ion binding|Rho GTPase activator activity			breast(4)|skin(3)|lung(2)|upper_aerodigestive_tract(1)|ovary(1)	11		all_lung(203;0.000732)|Lung NSC(277;0.00328)		all cancers(265;0.0187)|Epithelial(280;0.159)		TTTCATTTTTCCTTCCAAGTA	0.294													8	88					0	0	0.000274275	0	0
S1PR1	1901	broad.mit.edu	37	1	101705419	101705419	+	Silent	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr1:101705419G>A	uc001dud.2	+	2	1393	c.879G>A	c.(877-879)GCG>GCA	p.A293A	S1PR1_uc009weg.2_Silent_p.A293A	NM_001400	NP_001391	P21453	S1PR1_HUMAN	sphingosine-1-phosphate receptor 1	293	Extracellular (By similarity).				cell adhesion	integral to membrane	lysosphingolipid and lysophosphatidic acid receptor activity			ovary(2)|lung(1)	3						TCTTCAGAGCGGAGTACTTCC	0.562													26	151					0	0	0.00106085	0	0
OVGP1	5016	broad.mit.edu	37	1	111957374	111957374	+	Silent	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr1:111957374G>A	uc001eba.2	-	11	1805	c.1749C>T	c.(1747-1749)GTC>GTT	p.V583V	OVGP1_uc001eaz.2_Silent_p.V545V|OVGP1_uc010owb.1_Silent_p.V231V	NM_002557	NP_002548	Q12889	OVGP1_HUMAN	oviductal glycoprotein 1 precursor	583					chitin catabolic process|female pregnancy|single fertilization	transport vesicle	cation binding|chitinase activity			ovary(4)|large_intestine(1)	5		all_cancers(81;8.18e-06)|all_epithelial(167;5.64e-06)|all_lung(203;0.000152)|Lung NSC(277;0.000302)		Lung(183;0.0253)|Colorectal(144;0.033)|all cancers(265;0.0552)|Epithelial(280;0.0802)|COAD - Colon adenocarcinoma(174;0.123)|LUSC - Lung squamous cell carcinoma(189;0.14)		CTTCAGGGGTGACTGATATGT	0.517													14	82					0	0	0.00244969	0	0
HAO2	51179	broad.mit.edu	37	1	119927555	119927555	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr1:119927555C>T	uc001ehq.1	+	5	792	c.440C>T	c.(439-441)TCC>TTC	p.S147F	HAO2_uc001ehr.1_Missense_Mutation_p.S147F	NM_001005783	NP_001005783	Q9NYQ3	HAOX2_HUMAN	hydroxyacid oxidase 2	147	FMN hydroxy acid dehydrogenase.				fatty acid alpha-oxidation	peroxisome	(S)-2-hydroxy-acid oxidase activity			ovary(2)|skin(2)	4	all_neural(166;0.187)	all_lung(203;1.06e-06)|Lung NSC(69;7.5e-06)|all_epithelial(167;0.000284)		Lung(183;0.0155)|LUSC - Lung squamous cell carcinoma(189;0.0856)		AGGGTAGAATCCCTAGGTTTC	0.463													14	78					0	0	0.000422831	0	0
HAO2	51179	broad.mit.edu	37	1	119936434	119936434	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr1:119936434C>T	uc001ehq.1	+	9	1379	c.1027C>T	c.(1027-1029)CGA>TGA	p.R343*	HAO2_uc001ehr.1_Nonsense_Mutation_p.R343*	NM_001005783	NP_001005783	Q9NYQ3	HAOX2_HUMAN	hydroxyacid oxidase 2	343	FMN hydroxy acid dehydrogenase.				fatty acid alpha-oxidation	peroxisome	(S)-2-hydroxy-acid oxidase activity			ovary(2)|skin(2)	4	all_neural(166;0.187)	all_lung(203;1.06e-06)|Lung NSC(69;7.5e-06)|all_epithelial(167;0.000284)		Lung(183;0.0155)|LUSC - Lung squamous cell carcinoma(189;0.0856)		TGAGATCAATCGAAACTTGGT	0.478													17	116					0	0	0.00074312	0	0
ADAM30	11085	broad.mit.edu	37	1	120437452	120437452	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr1:120437452C>T	uc001eij.2	-	1	1662	c.1508G>A	c.(1507-1509)AGA>AAA	p.R503K		NM_021794	NP_068566	Q9UKF2	ADA30_HUMAN	ADAM metallopeptidase domain 30 preproprotein	503	Cys-rich.|Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			ovary(2)|lung(1)	3	all_cancers(5;7.07e-10)|all_epithelial(5;1.62e-10)|all_neural(166;0.153)|Breast(55;0.234)	all_lung(203;1.55e-06)|Lung NSC(69;1.04e-05)|all_epithelial(167;0.00138)		Lung(183;0.0204)|LUSC - Lung squamous cell carcinoma(189;0.117)		CTGCATATATCTGGATCTGCA	0.458													52	450					0	0	0.000781405	0	0
HIST2H2BA	337875	broad.mit.edu	37	1	120906358	120906358	+	RNA	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr1:120906358G>A	uc001eio.2	+	1		c.325G>A				NR_027337				Homo sapiens histone cluster 2, H2ba, mRNA (cDNA clone IMAGE:40032208).												0						GCTGCCCGGCGAGCTGGCCAA	0.637													6	29					0	0	0.00198382	0	0
NOTCH2NL	388677	broad.mit.edu	37	1	145273351	145273351	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr1:145273351C>T	uc001emn.3	+	3	575	c.205C>T	c.(205-207)CCA>TCA	p.P69S	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|NBPF10_uc001emp.3_5'UTR|NOTCH2NL_uc001emm.3_Missense_Mutation_p.P69S|NOTCH2NL_uc001emo.2_Missense_Mutation_p.P69S|NOTCH2NL_uc010oyh.1_RNA	NM_203458	NP_982283	Q7Z3S9	NT2NL_HUMAN	Notch homolog 2 N-terminal like protein	69	EGF-like 3.				cell differentiation|multicellular organismal development|Notch signaling pathway	cytoplasm|extracellular region	calcium ion binding			ovary(1)	1						GACATCTCATCCATGCTTTGT	0.552													36	870					0	0	0.000953801	0	0
CELF3	11189	broad.mit.edu	37	1	151677575	151677575	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr1:151677575C>T	uc001eys.1	-	12	2134	c.1340G>A	c.(1339-1341)GGC>GAC	p.G447D	CELF3_uc010pdh.1_Missense_Mutation_p.G233D|CELF3_uc001eyr.2_Missense_Mutation_p.G446D|CELF3_uc009wmy.2_Missense_Mutation_p.G397D|CELF3_uc009wmx.1_Missense_Mutation_p.G446D	NM_007185	NP_009116	Q5SZQ8	CELF3_HUMAN	trinucleotide repeat containing 4	447	RRM 3.				nuclear mRNA splicing, via spliceosome|regulation of alternative nuclear mRNA splicing, via spliceosome	cytoplasm|nucleus	mRNA binding|nucleotide binding			ovary(1)|central_nervous_system(1)	2						GCGCTTCATGCCGATCTGGAA	0.642													8	45					0	0	0.000157383	0	0
FLG2	388698	broad.mit.edu	37	1	152327551	152327551	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr1:152327551G>T	uc001ezw.3	-	3	2784	c.2711C>A	c.(2710-2712)TCA>TAA	p.S904*	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	904	Ser-rich.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GTATTGTCCTGAGCCAGTCCC	0.483													48	273					1.39193e-11	5.53237e-11	0.000781405	1	0
NUP210L	91181	broad.mit.edu	37	1	153998161	153998161	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr1:153998161G>A	uc001fdw.2	-	30	4051	c.3979C>T	c.(3979-3981)CTC>TTC	p.L1327F	NUP210L_uc009woq.2_Missense_Mutation_p.L236F|NUP210L_uc010peh.1_Missense_Mutation_p.L1327F	NM_207308	NP_997191	Q5VU65	P210L_HUMAN	nucleoporin 210kDa-like isoform 1	1327						integral to membrane				skin(5)|ovary(4)|large_intestine(1)|central_nervous_system(1)	11	all_lung(78;9.35e-31)|Lung NSC(65;1.33e-28)|Hepatocellular(266;0.0877)|Melanoma(130;0.128)		LUSC - Lung squamous cell carcinoma(543;0.151)|Colorectal(543;0.198)			AAACACTTGAGAACACGAGAA	0.468													22	191					0	0	0.00229938	0	0
HAX1	10456	broad.mit.edu	37	1	154245824	154245824	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr1:154245824C>T	uc001fes.2	+	2	227	c.66C>T	c.(64-66)CCC>CCT	p.P22P	HAX1_uc001fet.2_Intron|HAX1_uc010peo.1_Silent_p.P22P|HAX1_uc009wou.2_5'UTR|HAX1_uc009wov.2_5'UTR	NM_006118	NP_006109	O00165	HAX1_HUMAN	HCLS1 associated protein X-1 isoform a	22	Required for localization in mitochondria (By similarity).					actin cytoskeleton|cytoplasmic membrane-bounded vesicle|lamellipodium|mitochondrion|nuclear membrane|sarcoplasmic reticulum|soluble fraction	interleukin-1 binding|protein N-terminus binding				0	all_lung(78;2.62e-30)|Lung NSC(65;3.94e-28)|Hepatocellular(266;0.0877)		LUSC - Lung squamous cell carcinoma(543;0.185)			ACAGAGATCCCTTTTTTGGAG	0.493									Kostmann_syndrome				13	74					0	0	0.00244969	0	0
VHLL	391104	broad.mit.edu	37	1	156268578	156268578	+	Silent	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr1:156268578G>A	uc001fok.2	-	1	851	c.403C>T	c.(403-405)CTG>TTG	p.L135L		NM_001004319	NP_001004319	Q6RSH7	VHLL_HUMAN	von Hippel-Lindau tumor suppressor-like	135	Beta-domain.				protein ubiquitination	nucleus				ovary(1)	1	Hepatocellular(266;0.158)					ATACACTGCAGTGTGATGTTG	0.453													16	123					0	0	0.00074312	0	0
FCRL4	83417	broad.mit.edu	37	1	157556203	157556203	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr1:157556203C>T	uc001fqw.2	-	6	1026	c.890G>A	c.(889-891)GGG>GAG	p.G297E	FCRL4_uc010phy.1_RNA	NM_031282	NP_112572	Q96PJ5	FCRL4_HUMAN	Fc receptor-like 4 precursor	297	Ig-like C2-type 4.|Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(2)|kidney(1)|skin(1)	4	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.245)				AGCCTGGCCCCCTGAGGGCTG	0.612													5	45					0	0	0.000157383	0	0
DUSP23	54935	broad.mit.edu	37	1	159751976	159751976	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr1:159751976C>T	uc001ftz.1	+	3	328	c.301C>T	c.(301-303)CGC>TGC	p.R101C	DUSP23_uc001fua.1_Missense_Mutation_p.R101C|DUSP23_uc001fub.1_Missense_Mutation_p.R101C	NM_017823	NP_060293	Q9BVJ7	DUS23_HUMAN	dual specificity phosphatase 23	101	Tyrosine-protein phosphatase.					cytosol|nucleus	protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			lung(1)	1	all_hematologic(112;0.0537)					GGGCTTTGGCCGCACTGGCAC	0.617													5	45					0	0	0.00198382	0	0
LY9	4063	broad.mit.edu	37	1	160783651	160783651	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr1:160783651C>T	uc001fwu.2	+	3	730	c.680C>T	c.(679-681)CCC>CTC	p.P227L	LY9_uc010pjs.1_Missense_Mutation_p.P227L|LY9_uc001fwv.2_Missense_Mutation_p.P227L|LY9_uc001fww.2_Missense_Mutation_p.P227L|LY9_uc001fwx.2_Missense_Mutation_p.P227L|LY9_uc001fwy.1_Missense_Mutation_p.P129L|LY9_uc001fwz.2_5'Flank	NM_002348	NP_002339	Q9HBG7	LY9_HUMAN	lymphocyte antigen 9 isoform a	227	Extracellular (Potential).|Ig-like C2-type 1.				cell adhesion|immunoglobulin mediated immune response	integral to membrane				ovary(1)	1	all_cancers(52;2.72e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00737)			GCCCAGAACCCCGTCAGCCAG	0.547													6	115					0	0	0.000157383	0	0
CD244	51744	broad.mit.edu	37	1	160801166	160801166	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr1:160801166C>T	uc009wtq.2	-	9	1262	c.1084G>A	c.(1084-1086)GAG>AAG	p.E362K	CD244_uc001fxa.2_Missense_Mutation_p.E357K|CD244_uc009wtp.2_RNA|CD244_uc009wtr.2_Missense_Mutation_p.E265K	NM_016382	NP_057466	Q9BZW8	CD244_HUMAN	CD244 natural killer cell receptor 2B4	362	Cytoplasmic (Potential).				blood coagulation|leukocyte migration	integral to membrane|plasma membrane	protein binding|receptor activity			ovary(1)	1	all_cancers(52;2.72e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00737)			TTCTCCAGCTCTTTGCGGCTC	0.453													11	116					0	0	0.000422831	0	0
SELE	6401	broad.mit.edu	37	1	169698654	169698654	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr1:169698654C>T	uc001ggm.3	-	6	1033	c.876G>A	c.(874-876)TGG>TGA	p.W292*	C1orf112_uc001ggj.2_Intron	NM_000450	NP_000441	P16581	LYAM2_HUMAN	selectin E precursor	292	Sushi 2.|Extracellular (Potential).				actin filament-based process|activation of phospholipase C activity|calcium-mediated signaling|heterophilic cell-cell adhesion|leukocyte migration involved in inflammatory response|leukocyte tethering or rolling|positive regulation of receptor internalization|regulation of inflammatory response|response to interleukin-1|response to lipopolysaccharide|response to tumor necrosis factor	caveola|coated pit|cortical cytoskeleton|extracellular space|integral to membrane|perinuclear region of cytoplasm	oligosaccharide binding|phospholipase binding|sialic acid binding|transmembrane receptor activity			ovary(3)|skin(2)	5	all_hematologic(923;0.208)					TCTCGTTGTCCCAATTCCCAG	0.453													5	82					0	0	0.00116845	0	0
DNM3	26052	broad.mit.edu	37	1	172348277	172348277	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr1:172348277C>T	uc001gie.2	+	18	2189	c.2013C>T	c.(2011-2013)ATC>ATT	p.I671I	DNM3_uc001gif.2_Silent_p.I667I|DNM3_uc001gih.1_Silent_p.I27I	NM_015569	NP_056384	Q9UQ16	DYN3_HUMAN	dynamin 3 isoform a	677	GED.				endocytosis|filopodium assembly|synapse assembly	dendritic spine|microtubule|perinuclear region of cytoplasm|postsynaptic density	GTP binding|GTPase activity|protein binding			breast(1)	1						ACAAATGTATCCGAGATCTAA	0.398													5	24					0	0	0.00116845	0	0
C1orf125	126859	broad.mit.edu	37	1	179462017	179462017	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr1:179462017G>A	uc001gmo.2	+	20	2446	c.2319G>A	c.(2317-2319)ATG>ATA	p.M773I	C1orf125_uc009wxg.2_RNA|C1orf125_uc001gmp.2_Missense_Mutation_p.M773I|C1orf125_uc009wxh.2_RNA	NM_144696	NP_653297	Q5T1B0	AXDN1_HUMAN	hypothetical protein LOC126859 isoform 1	773											0						TAACAGCAATGGCTCTGAGTA	0.373													10	55					0	0	0.000673444	0	0
TDRD5	163589	broad.mit.edu	37	1	179620142	179620142	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr1:179620142C>T	uc001gnf.1	+	12	2191	c.1941C>T	c.(1939-1941)TTC>TTT	p.F647F	TDRD5_uc010pnp.1_Silent_p.F647F|TDRD5_uc001gnh.1_Silent_p.F202F	NM_173533	NP_775804	Q8NAT2	TDRD5_HUMAN	tudor domain containing 5	647					DNA methylation involved in gamete generation|P granule organization|spermatid development	chromatoid body|pi-body	nucleic acid binding			ovary(2)|skin(2)|central_nervous_system(1)	5						ATGTCTATTTCCATCATGTCT	0.383													13	103					0	0	0.00185496	0	0
CACNA1E	777	broad.mit.edu	37	1	181741317	181741317	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr1:181741317G>A	uc001gow.2	+	37	5254	c.5089G>A	c.(5089-5091)GAT>AAT	p.D1697N	CACNA1E_uc009wxs.2_Missense_Mutation_p.D1585N|CACNA1E_uc001gox.1_Missense_Mutation_p.D923N|CACNA1E_uc009wxt.2_Missense_Mutation_p.D923N	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	1697	Extracellular (Potential).|IV.				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						CTGCGGCACCGATCTGGCCTA	0.557													9	88					0	0	0.000673444	0	0
FAM129A	116496	broad.mit.edu	37	1	184792371	184792371	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr1:184792371C>T	uc001gra.2	-	8	1109	c.915G>A	c.(913-915)CTG>CTA	p.L305L	FAM129A_uc001grb.1_Silent_p.L68L|FAM129A_uc009wyh.1_Silent_p.L133L|FAM129A_uc009wyi.1_Silent_p.L103L	NM_052966	NP_443198	Q9BZQ8	NIBAN_HUMAN	niban protein isoform 2	305					negative regulation of protein phosphorylation|positive regulation of protein phosphorylation|positive regulation of translation|response to endoplasmic reticulum stress	cytoplasm|nucleus|plasma membrane				ovary(3)|skin(1)	4						TCGTTCCTTCCAGGCCCTTTG	0.448													13	52					0	0	0.00185496	0	0
FAM5C	339479	broad.mit.edu	37	1	190067958	190067958	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr1:190067958C>T	uc001gse.1	-	8	1723	c.1491G>A	c.(1489-1491)ATG>ATA	p.M497I	FAM5C_uc010pot.1_Missense_Mutation_p.M395I	NM_199051	NP_950252	Q76B58	FAM5C_HUMAN	family with sequence similarity 5, member C	497						extracellular region				lung(2)|ovary(1)|kidney(1)|skin(1)	5	Prostate(682;0.198)					GCAGATATTTCATCTCGAGAT	0.498													17	139					0	0	0.00121646	0	0
PLXNA2	5362	broad.mit.edu	37	1	208390773	208390773	+	Silent	SNP	C	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr1:208390773C>A	uc001hgz.2	-	2	1253	c.495G>T	c.(493-495)ACG>ACT	p.T165T	PLXNA2_uc001hha.3_Silent_p.T219T	NM_025179	NP_079455	O75051	PLXA2_HUMAN	plexin A2 precursor	165	Extracellular (Potential).|Sema.				axon guidance	integral to membrane|intracellular|plasma membrane				ovary(2)|central_nervous_system(1)	3				OV - Ovarian serous cystadenocarcinoma(81;0.199)		ACATGGTGCCCGTCTTGTTGA	0.582													6	141					0.00198382	0.00774869	0.00198382	1	0
EPRS	2058	broad.mit.edu	37	1	220156683	220156683	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr1:220156683G>A	uc001hly.1	-	22	3418	c.3148C>T	c.(3148-3150)CGT>TGT	p.R1050C		NM_004446	NP_004437	P07814	SYEP_HUMAN	glutamyl-prolyl tRNA synthetase	1050	Prolyl-tRNA synthetase.				glutamyl-tRNA aminoacylation|prolyl-tRNA aminoacylation|protein complex assembly	cytosol|soluble fraction	ATP binding|glutamate-tRNA ligase activity|proline-tRNA ligase activity|protein binding|RNA binding			ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(131;0.0735)	L-Glutamic Acid(DB00142)|L-Proline(DB00172)	GCCCAGGGACGAAGAATATAA	0.378													5	49					0	0	0.00198382	0	0
SLC35F3	148641	broad.mit.edu	37	1	234452397	234452397	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr1:234452397C>T	uc001hwa.1	+	4	899	c.671C>T	c.(670-672)GCT>GTT	p.A224V	SLC35F3_uc001hvy.1_Missense_Mutation_p.A293V	NM_173508	NP_775779	Q8IY50	S35F3_HUMAN	solute carrier family 35, member F3	224	Helical; (Potential).				transport	integral to membrane				ovary(2)	2	Ovarian(103;0.0454)	all_cancers(173;0.145)|Prostate(94;0.0885)	OV - Ovarian serous cystadenocarcinoma(106;0.00531)			ATGACCTACGCTGATGGCTTC	0.582													26	172					0	0	0.00047179	0	0
RYR2	6262	broad.mit.edu	37	1	237936894	237936894	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr1:237936894C>T	uc001hyl.1	+	87	11841	c.11721C>T	c.(11719-11721)TCC>TCT	p.S3907S	RYR2_uc010pya.1_Silent_p.S322S	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	3907					cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			GGAATTTCTCCAAAGCTATCC	0.348													4	49					0	0	0.000602214	0	0
ZNF238	10472	broad.mit.edu	37	1	244217908	244217908	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr1:244217908C>T	uc001iae.2	+	1	1327	c.805C>T	c.(805-807)CTG>TTG	p.L269L	ZNF238_uc001iad.3_Silent_p.L278L|ZNF238_uc001iaf.1_3'UTR	NM_006352	NP_006343	Q99592	ZN238_HUMAN	zinc finger protein 238 isoform 2	269					negative regulation of transcription from RNA polymerase II promoter|skeletal muscle tissue development	nuclear chromosome	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)|pancreas(2)	5	all_cancers(71;6.42e-05)|all_epithelial(71;7e-05)|Breast(184;0.0333)|Ovarian(71;0.0619)|all_lung(81;0.089)|all_neural(11;0.101)|Lung NSC(105;0.123)		all cancers(7;1.35e-08)|GBM - Glioblastoma multiforme(7;1e-06)|OV - Ovarian serous cystadenocarcinoma(106;0.00223)			GAGAAGCAACCTGGTGCAGGT	0.468													7	50					0	0	0.000442599	0	0
OR1C1	26188	broad.mit.edu	37	1	247920941	247920941	+	Silent	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr1:247920941G>A	uc010pza.1	-	1	768	c.768C>T	c.(766-768)ATC>ATT	p.I256I		NM_012353	NP_036485	Q15619	OR1C1_HUMAN	olfactory receptor, family 1, subfamily C,	256	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;4.34e-05)|all_epithelial(71;1.13e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0786)|Lung NSC(105;0.0858)	all_cancers(173;0.0247)	OV - Ovarian serous cystadenocarcinoma(106;0.0168)			AATAGACGGCGATGGCTGTGC	0.522													7	43					0	0	0.00198382	0	0
OR2L2	26246	broad.mit.edu	37	1	248202095	248202095	+	Missense_Mutation	SNP	T	G	G			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr1:248202095T>G	uc001idw.2	+	1	622	c.526T>G	c.(526-528)TTT>GTT	p.F176V	OR2L13_uc001ids.2_Intron	NM_001004686	NP_001004686	Q8NH16	OR2L2_HUMAN	olfactory receptor, family 2, subfamily L,	176	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0278)			CATCAATCATTTTTTCTGTGA	0.438													4	153					0	0	0.00024832	0	0
CCDC3	83643	broad.mit.edu	37	10	12940532	12940532	+	Missense_Mutation	SNP	T	G	G			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr10:12940532T>G	uc001ilq.1	-	3	831	c.697A>C	c.(697-699)AAG>CAG	p.K233Q	CCDC3_uc009xjb.1_RNA|CCDC3_uc001ilr.2_RNA|CCDC3_uc009xjc.1_RNA	NM_031455	NP_113643	Q9BQI4	CCDC3_HUMAN	coiled-coil domain containing 3 precursor	233	Potential.					endoplasmic reticulum|extracellular region				ovary(1)	1		Ovarian(717;0.0822)	BRCA - Breast invasive adenocarcinoma(52;0.163)			CGGCCCTTCTTACGCGCCTGC	0.667													5	49					0	0	0.000602214	0	0
ACBD7	414149	broad.mit.edu	37	10	15063863	15063863	+	Splice_Site	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr10:15063863C>T	uc010qby.1	-	4	230	c.-79_splice	c.e4-1					Q8N6N7	ACBD7_HUMAN	SubName: Full=cDNA FLJ52263, highly similar to Artemis protein (EC 3.1.-.-);								fatty-acyl-CoA binding				0						CAATAGATATCTGTAAAAATA	0.333													6	47					0	0	0.00116845	0	0
MYO3A	53904	broad.mit.edu	37	10	26310516	26310516	+	Missense_Mutation	SNP	G	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr10:26310516G>T	uc001isn.2	+	8	1030	c.670G>T	c.(670-672)GGT>TGT	p.G224C	MYO3A_uc009xko.1_Missense_Mutation_p.G224C|MYO3A_uc009xkp.1_RNA|MYO3A_uc009xkq.1_Missense_Mutation_p.G224C|MYO3A_uc001ism.2_Missense_Mutation_p.G224C	NM_017433	NP_059129	Q8NEV4	MYO3A_HUMAN	myosin IIIA	224	Protein kinase.				protein autophosphorylation|response to stimulus|sensory perception of sound|visual perception	cytoplasm|filamentous actin|filopodium|myosin complex	actin binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|plus-end directed microfilament motor activity|protein serine/threonine kinase activity			ovary(6)|stomach(3)|lung(3)|central_nervous_system(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	18						CATTGAGCTGGGTGATGGAGA	0.488													7	82					0.00198382	0.00774869	0.00198382	1	0
MKX	283078	broad.mit.edu	37	10	27964450	27964450	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr10:27964450C>T	uc001ity.3	-	6	1097	c.872G>A	c.(871-873)AGC>AAC	p.S291N	MKX_uc001itx.3_Missense_Mutation_p.S291N	NM_173576	NP_775847	Q8IYA7	MKX_HUMAN	mohawk homeobox	291					muscle organ development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						TTTTGCTCACCTTTCACCCTT	0.373													5	29					0	0	0.000602214	0	0
DRGX	644168	broad.mit.edu	37	10	50574314	50574314	+	Silent	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr10:50574314G>A	uc010qgq.1	-	6	654	c.654C>T	c.(652-654)GCC>GCT	p.A218A		NM_001080520	NP_001073989	A6NNA5	DRGX_HUMAN	dorsal root ganglia homeobox	218					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						AGTGCTCGCGGGCCTTCATGC	0.677													8	73					0	0	0.000442599	0	0
NCOA4	8031	broad.mit.edu	37	10	51585487	51585487	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr10:51585487C>T	uc001jis.3	+	8	1789	c.1586C>T	c.(1585-1587)ACT>ATT	p.T529I	PARG_uc001jih.2_Intron|uc010qha.1_Intron|uc001jin.2_Intron|uc010qhb.1_Intron|uc010qhc.1_Intron|NCOA4_uc009xon.2_Missense_Mutation_p.T545I|NCOA4_uc010qhd.1_Missense_Mutation_p.T545I|NCOA4_uc010qhe.1_Missense_Mutation_p.T429I|NCOA4_uc010qhf.1_Missense_Mutation_p.T363I|NCOA4_uc001jit.2_Missense_Mutation_p.T529I|NCOA4_uc009xoo.2_Missense_Mutation_p.T529I	NM_001145263	NP_001138735	Q13772	NCOA4_HUMAN	nuclear receptor coactivator 4 isoform 3	529					androgen receptor signaling pathway|male gonad development|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	androgen receptor binding|transcription coactivator activity			central_nervous_system(1)|kidney(1)	2						CCCATGAATACTTCCTGGTGT	0.498			T	RET	papillary thyroid 								10	91					0	0	0.000442599	0	0
CDH23	64072	broad.mit.edu	37	10	73406336	73406336	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr10:73406336G>A	uc001jrx.3	+	13	1788	c.1411G>A	c.(1411-1413)GAG>AAG	p.E471K	CDH23_uc001jrw.3_Missense_Mutation_p.E471K|CDH23_uc001jry.2_Missense_Mutation_p.E87K|CDH23_uc001jrz.2_Missense_Mutation_p.E87K	NM_022124	NP_071407	Q9H251	CAD23_HUMAN	cadherin-like 23 isoform 1 precursor	471	Cadherin 5.|Extracellular (Potential).				calcium ion transport|calcium-dependent cell-cell adhesion|cytosolic calcium ion homeostasis|equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	cytosol|integral to membrane|plasma membrane|stereocilium	calcium ion binding|protein binding			central_nervous_system(5)|large_intestine(4)|ovary(2)	11						CAGCCTGTACGAGAACGTCAC	0.582													11	98					0	0	0.00136819	0	0
GPR120	338557	broad.mit.edu	37	10	95347082	95347082	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr10:95347082C>T	uc010qnt.1	+	4	906	c.850C>T	c.(850-852)CTC>TTC	p.L284F	GPR120_uc010qnu.1_Missense_Mutation_p.L268F	NM_181745	NP_859529	Q5NUL3	O3FA1_HUMAN	G protein-coupled receptor 120	284	Cytoplasmic (Potential).				negative regulation of cytokine secretion|negative regulation of inflammatory response|regulation of glucose transport	integral to membrane|plasma membrane	fatty acid binding				0		Colorectal(252;0.122)				CACCCTCTTCCTCCTCATGGT	0.567													14	94					0	0	0.00185496	0	0
RRP12	23223	broad.mit.edu	37	10	99139485	99139485	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr10:99139485G>A	uc001knf.2	-	14	1715	c.1576C>T	c.(1576-1578)CCC>TCC	p.P526S	RRP12_uc009xvm.2_Missense_Mutation_p.P244S|RRP12_uc010qou.1_Missense_Mutation_p.P465S|RRP12_uc009xvn.2_Missense_Mutation_p.P426S	NM_015179	NP_055994	Q5JTH9	RRP12_HUMAN	ribosomal RNA processing 12 homolog isoform 1	526						integral to membrane|nuclear membrane|nucleolus	protein binding			ovary(2)|central_nervous_system(1)	3		Colorectal(252;0.162)		Epithelial(162;2.72e-09)|all cancers(201;1.76e-07)		GCCGTGTGGGGGAAATGAGGG	0.597													8	32					0	0	0.000442599	0	0
HABP2	3026	broad.mit.edu	37	10	115337887	115337887	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr10:115337887G>A	uc001lai.3	+	6	654	c.551G>A	c.(550-552)GGG>GAG	p.G184E	HABP2_uc010qrz.1_RNA|HABP2_uc010qry.1_Missense_Mutation_p.G173R	NM_004132	NP_004123	Q14520	HABP2_HUMAN	hyaluronan binding protein 2 preproprotein	184	EGF-like 3.				cell adhesion|proteolysis	extracellular space	glycosaminoglycan binding|serine-type endopeptidase activity			ovary(2)|skin(1)	3		Colorectal(252;0.0233)|Breast(234;0.0672)		Epithelial(162;0.00319)|all cancers(201;0.0112)		CAGTTCAAGGGGAAATTCTGT	0.547													14	51					0	0	0.00074312	0	0
IGF2	3481	broad.mit.edu	37	11	2156739	2156739	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr11:2156739C>T	uc009yde.2	-	2	118	c.15G>A	c.(13-15)ATG>ATA	p.M5I	IGF2_uc001lvf.2_5'Flank|IGF2_uc001lvg.2_Missense_Mutation_p.M5I|IGF2_uc009ydf.2_Missense_Mutation_p.M61I|IGF2_uc001lvh.2_Missense_Mutation_p.M5I|INS-IGF2_uc001lvi.2_RNA|MIR483_hsa-mir-483|MI0002467_5'Flank|INS-IGF2_uc001lvj.1_RNA	NM_001007139	NP_001007140	P01344	IGF2_HUMAN	insulin-like growth factor 2 isoform 1	5					glucose metabolic process|ossification|phosphatidylinositol 3-kinase cascade involved in insulin receptor signaling|positive regulation of activated T cell proliferation|positive regulation of cell division|positive regulation of glycogen (starch) synthase activity|positive regulation of glycogen biosynthetic process|positive regulation of insulin receptor signaling pathway|positive regulation of MAPKKK cascade|positive regulation of mitosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of protein kinase B signaling cascade|regulation of gene expression by genetic imprinting|regulation of transcription, DNA-dependent|skeletal system development	extracellular space	growth factor activity|hormone activity|insulin receptor binding|insulin-like growth factor receptor binding|protein serine/threonine kinase activator activity|receptor activator activity			central_nervous_system(1)	1		all_epithelial(84;5.04e-06)|Breast(177;0.000777)|Ovarian(85;0.0014)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.191)|all_lung(207;0.24)	Colorectal(5;0.0179)|COAD - Colon adenocarcinoma(6;0.029)	BRCA - Breast invasive adenocarcinoma(625;1.09e-05)|LUSC - Lung squamous cell carcinoma(625;0.082)|Lung(200;0.153)		TCGACTTCCCCATTGGGATTC	0.637													4	18					0	0	0.000602214	0	0
OR56A3	390083	broad.mit.edu	37	11	5968762	5968762	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr11:5968762C>T	uc010qzt.1	+	1	186	c.186C>T	c.(184-186)CCC>CCT	p.P62P		NM_001003443	NP_001003443	Q8NH54	O56A3_HUMAN	olfactory receptor, family 56, subfamily A,	62	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;9.41e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TGCACCAGCCCCTGTACTACC	0.612													13	83					0	0	0.00136819	0	0
OR10A5	144124	broad.mit.edu	37	11	6867192	6867192	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr11:6867192C>T	uc001met.1	+	1	279	c.279C>T	c.(277-279)ATC>ATT	p.I93I		NM_178168	NP_835462	Q9H207	O10A5_HUMAN	olfactory receptor, family 10, subfamily A,	93	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.68e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		ACACAACCATCTCCTTCCTTG	0.493													8	64					0	0	0.000442599	0	0
ZDHHC13	54503	broad.mit.edu	37	11	19187864	19187864	+	Missense_Mutation	SNP	A	G	G			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr11:19187864A>G	uc001mpi.2	+	14	1511	c.1406A>G	c.(1405-1407)CAC>CGC	p.H469R	ZDHHC13_uc001mpj.2_Missense_Mutation_p.H339R	NM_019028	NP_061901	Q8IUH4	ZDH13_HUMAN	zinc finger, DHHC domain containing 13 isoform	469	DHHC-type.				positive regulation of I-kappaB kinase/NF-kappaB cascade	Golgi-associated vesicle membrane|integral to membrane	magnesium ion transmembrane transporter activity|palmitoyltransferase activity|signal transducer activity|zinc ion binding				0						GGCAACCATCACTATTACATA	0.313													5	34					0	0	0.000602214	0	0
OR4C15	81309	broad.mit.edu	37	11	55322146	55322146	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr11:55322146C>T	uc010rig.1	+	1	364	c.364C>T	c.(364-366)CTG>TTG	p.L122L		NM_001001920	NP_001001920	Q8NGM1	OR4CF_HUMAN	olfactory receptor, family 4, subfamily C,	68	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						CCTGTCCTTCCTGGATGCGTG	0.473										HNSCC(20;0.049)			17	145					0	0	0.00074312	0	0
OR4C11	219429	broad.mit.edu	37	11	55371070	55371070	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr11:55371070C>T	uc010rii.1	-	1	780	c.780G>A	c.(778-780)CCG>CCA	p.P260P		NM_001004700	NP_001004700	Q6IEV9	OR4CB_HUMAN	olfactory receptor, family 4, subfamily C,	260	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						GGAAAGTGGTCGGGGGGCGTG	0.438													6	49					0	0	0.00116845	0	0
OR5D16	390144	broad.mit.edu	37	11	55606700	55606700	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr11:55606700C>T	uc010rio.1	+	1	473	c.473C>T	c.(472-474)TCC>TTC	p.S158F		NM_001005496	NP_001005496	Q8NGK9	OR5DG_HUMAN	olfactory receptor, family 5, subfamily D,	158	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)|skin(1)	5		all_epithelial(135;0.208)				GTCGCATGTTCCCTGACACTC	0.448													7	47					0	0	0.00198382	0	0
OR5AS1	219447	broad.mit.edu	37	11	55798623	55798623	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr11:55798623C>T	uc010riw.1	+	1	729	c.729C>T	c.(727-729)TCC>TCT	p.S243S		NM_001001921	NP_001001921	Q8N127	O5AS1_HUMAN	olfactory receptor, family 5, subfamily AS,	243	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|liver(1)|skin(1)	5	Esophageal squamous(21;0.00693)					CTTGTGCTTCCCACCTCATAG	0.448													20	131					0	0	0.00152264	0	0
OR8H1	219469	broad.mit.edu	37	11	56058290	56058290	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr11:56058290C>T	uc010rje.1	-	1	249	c.249G>A	c.(247-249)GCG>GCA	p.A83A		NM_001005199	NP_001005199	Q8NGG4	OR8H1_HUMAN	olfactory receptor, family 8, subfamily H,	83	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3	Esophageal squamous(21;0.00448)					TCAGTAAGTTCGCTAAGGTTT	0.418													18	231					0	0	0.00152264	0	0
OR5AK2	390181	broad.mit.edu	37	11	56756415	56756415	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr11:56756415C>T	uc010rjp.1	+	1	27	c.27C>T	c.(25-27)GTC>GTT	p.V9V		NM_001005323	NP_001005323	Q8NH90	O5AK2_HUMAN	olfactory receptor, family 5, subfamily AK,	9	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3						GCACTGAAGTCACTGAATTCT	0.403													24	136					0	0	0.000720815	0	0
OR10W1	81341	broad.mit.edu	37	11	58035019	58035019	+	Silent	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr11:58035019G>A	uc001nmq.1	-	1	714	c.312C>T	c.(310-312)TTC>TTT	p.F104F		NM_207374	NP_997257	Q8NGF6	O10W1_HUMAN	olfactory receptor, family 10, subfamily W,	104	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.0589)				CAGCCAAGAGGAAGCAATCAG	0.537													9	46					0	0	0.000673444	0	0
GLYATL1	92292	broad.mit.edu	37	11	58714518	58714518	+	Splice_Site	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr11:58714518G>A	uc001nnf.2	+	4	335	c.-41_splice	c.e4-1		uc001nng.1_Intron|GLYATL1_uc001nnh.1_Splice_Site_p.E50_splice|GLYATL1_uc001nni.1_Splice_Site|GLYATL1_uc001nnj.1_Splice_Site			Q969I3	GLYL1_HUMAN	SubName: Full=Glycine acyltransferase family-C; SubName: Full=Glycine-N-acyltransferase-like 1, isoform CRA_a;							mitochondrion	glycine N-acyltransferase activity			ovary(1)	1					Glycine(DB00145)	TATCTTTTCAGAGTTTCTTCT	0.294													6	60					0	0	0.00198382	0	0
C11orf66	220004	broad.mit.edu	37	11	61254516	61254516	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr11:61254516G>A	uc001nru.1	+	10	1056	c.931G>A	c.(931-933)GAG>AAG	p.E311K	C11orf66_uc009ynq.1_Missense_Mutation_p.E291K	NM_145017	NP_659454	Q7Z5V6	CK066_HUMAN	IIIG9 protein	311										ovary(1)	1						GCTTGGCCGGGAGACTGTGGG	0.582													17	105					0	0	0.000566183	0	0
POLR2G	5436	broad.mit.edu	37	11	62532814	62532814	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr11:62532814C>T	uc001nva.2	+	5	446	c.336C>T	c.(334-336)TCC>TCT	p.S112S	POLR2G_uc001nvb.2_RNA	NM_002696	NP_002687	P62487	RPB7_HUMAN	DNA directed RNA polymerase II polypeptide G	112					mRNA capping|nuclear mRNA splicing, via spliceosome|positive regulation of viral transcription|protein phosphorylation|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	DNA-directed RNA polymerase II, core complex	DNA-directed RNA polymerase activity|protein binding|RNA binding				0						CCTTTCAGTCCATCCCTTCAG	0.463													22	181					0	0	0.000878237	0	0
PRDX5	25824	broad.mit.edu	37	11	64087253	64087253	+	Silent	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr11:64087253G>A	uc001nzu.2	+	2	338	c.219G>A	c.(217-219)GGG>GGA	p.G73G	TRMT112_uc001nzt.2_5'Flank|PRDX5_uc001nzv.2_Silent_p.G73G|PRDX5_uc001nzw.2_Intron|PRDX5_uc001nzx.2_RNA	NM_012094	NP_036226	P30044	PRDX5_HUMAN	peroxiredoxin 5 isoform a precursor	73	Thioredoxin.				cell redox homeostasis|cellular response to reactive oxygen species|inflammatory response|negative regulation of apoptosis	cytosolic part|mitochondrion|peroxisome	caspase inhibitor activity|peroxidase activity|peroxiredoxin activity			breast(1)	1					Auranofin(DB00995)	GGGAGCCAGGGAACAAGGTGA	0.597													11	86					0	0	0.00244969	0	0
ATG2A	23130	broad.mit.edu	37	11	64668062	64668062	+	Silent	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr11:64668062G>A	uc001obx.2	-	31	4483	c.4368C>T	c.(4366-4368)TCC>TCT	p.S1456S	ATG2A_uc001obw.2_Silent_p.S221S	NM_015104	NP_055919	Q2TAZ0	ATG2A_HUMAN	autophagy related 2A	1456							protein binding			ovary(1)|central_nervous_system(1)	2						CAGAGCAGCGGGAAGGGGAGC	0.662													4	42					0	0	0.00024832	0	0
CATSPER1	117144	broad.mit.edu	37	11	65793650	65793650	+	Silent	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr11:65793650G>A	uc001ogt.2	-	1	339	c.201C>T	c.(199-201)CAC>CAT	p.H67H		NM_053054	NP_444282	Q8NEC5	CTSR1_HUMAN	sperm-associated cation channel 1	67	His-rich.|Cytoplasmic (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	cilium|flagellar membrane|integral to membrane	protein binding			ovary(2)	2						AGGCTTGGTCGTGGAAGTCTT	0.607													11	83					0	0	0.00136819	0	0
NPAS4	266743	broad.mit.edu	37	11	66191942	66191943	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr11:66191942_66191943CC>TT	uc001ohx.1	+	7	1757_1758	c.1581_1582CC>TT	c.(1579-1584)GCCCAT>GCTTAT	p.H528Y	NPAS4_uc010rpc.1_Missense_Mutation_p.H318Y	NM_178864	NP_849195	Q8IUM7	NPAS4_HUMAN	neuronal PAS domain protein 4	528					transcription, DNA-dependent		DNA binding|signal transducer activity				0						GCAGCCCTGCCCATGAACAGCT	0.589													13	137					0	0	6.4e-05	0	0
GPR152	390212	broad.mit.edu	37	11	67219361	67219361	+	Missense_Mutation	SNP	A	G	G			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr11:67219361A>G	uc001olm.2	-	1	840	c.835T>C	c.(835-837)TAC>CAC	p.Y279H	uc009yrw.1_5'Flank|CABP4_uc001oln.2_5'Flank	NM_206997	NP_996880	Q8TDT2	GP152_HUMAN	G protein-coupled receptor 152	279	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity				0			BRCA - Breast invasive adenocarcinoma(15;8.18e-06)			TAGTCGGAGTAGACCAGGGCC	0.637													9	46					0	0	0.000274275	0	0
ARHGEF17	9828	broad.mit.edu	37	11	73074358	73074358	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr11:73074358C>T	uc001otu.2	+	15	5125	c.5104C>T	c.(5104-5106)CCC>TCC	p.P1702S		NM_014786	NP_055601	Q96PE2	ARHGH_HUMAN	Rho guanine nucleotide exchange factor (GEF) 17	1702					actin cytoskeleton organization|apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity				0						GCCTGGTGGTCCCTGCGGCAC	0.667													5	22					0	0	0.000602214	0	0
C2CD3	26005	broad.mit.edu	37	11	73748620	73748620	+	Silent	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr11:73748620G>A	uc001ouu.2	-	30	6011	c.5784C>T	c.(5782-5784)GAC>GAT	p.D1928D	C2CD3_uc001out.2_RNA	NM_015531	NP_056346	Q4AC94	C2CD3_HUMAN	C2 calcium-dependent domain containing 3	1928						centrosome				ovary(4)|pancreas(2)|skin(1)	7	Breast(11;4.16e-06)					GCCCAAGATGGTCCCTACAGC	0.552													17	83					0	0	0.000566183	0	0
ODZ4	26011	broad.mit.edu	37	11	78380468	78380468	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr11:78380468G>A	uc001ozl.3	-	32	7385	c.6922C>T	c.(6922-6924)CAC>TAC	p.H2308Y	ODZ4_uc001ozk.3_Missense_Mutation_p.H533Y|ODZ4_uc009yvb.1_Missense_Mutation_p.H892Y	NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	2308	YD 22.|Extracellular (Potential).				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						TGCAGGTGGTGGCTGTGGCTG	0.602													12	75					0	0	0.00136819	0	0
FAT3	120114	broad.mit.edu	37	11	92592355	92592355	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr11:92592355G>A	uc001pdj.3	+	20	11542	c.11525G>A	c.(11524-11526)GGA>GAA	p.G3842E	FAT3_uc001pdi.3_Missense_Mutation_p.G282E	NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	3842	Laminin G-like.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				AGCTTTGCTGGAAACAGTTAC	0.388										TCGA Ovarian(4;0.039)			47	277					0	0	0.000781405	0	0
CCDC67	159989	broad.mit.edu	37	11	93088569	93088569	+	Missense_Mutation	SNP	T	C	C			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr11:93088569T>C	uc001pdq.2	+	3	162	c.62T>C	c.(61-63)TTA>TCA	p.L21S	CCDC67_uc001pdo.1_Missense_Mutation_p.L21S|CCDC67_uc001pdp.2_Missense_Mutation_p.L21S	NM_181645	NP_857596	Q05D60	CCD67_HUMAN	coiled-coil domain containing 67	21	Potential.									ovary(1)	1		Acute lymphoblastic leukemia(157;2.35e-05)|all_hematologic(158;0.00824)				CTTCAGGAATTAATGGAACAA	0.368													16	75					0	0	0.00121646	0	0
PIWIL4	143689	broad.mit.edu	37	11	94353025	94353025	+	Silent	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr11:94353025G>A	uc001pfa.2	+	18	2479	c.2268G>A	c.(2266-2268)GTG>GTA	p.V756V	PIWIL4_uc009ywk.1_RNA	NM_152431	NP_689644	Q7Z3Z4	PIWL4_HUMAN	piwi-like 4	756	Piwi.				cell differentiation|DNA methylation involved in gamete generation|gene silencing by RNA|meiosis|multicellular organismal development|piRNA metabolic process|regulation of translation|spermatogenesis	nucleus|piP-body	piRNA binding			skin(1)	1		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.0123)				GCACTGTTGTGGATTCAGAAG	0.443													11	63					0	0	0.000978159	0	0
GRIA4	2893	broad.mit.edu	37	11	105623907	105623907	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr11:105623907G>A	uc001pix.2	+	4	894	c.448G>A	c.(448-450)GAA>AAA	p.E150K	GRIA4_uc001piu.1_Missense_Mutation_p.E150K|GRIA4_uc001piw.2_Missense_Mutation_p.E150K|GRIA4_uc001piv.2_Missense_Mutation_p.E150K|GRIA4_uc009yxk.1_Missense_Mutation_p.E150K	NM_000829	NP_000820	P48058	GRIA4_HUMAN	glutamate receptor, ionotrophic, AMPA 4 isoform	150	Extracellular (Potential).				glutamate signaling pathway|synaptic transmission	cell junction|endocytic vesicle membrane|integral to membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity			ovary(3)|skin(3)|lung(1)|central_nervous_system(1)	8		Melanoma(852;0.000902)|Acute lymphoblastic leukemia(157;0.000994)|all_hematologic(158;0.0017)|Breast(348;0.0323)		BRCA - Breast invasive adenocarcinoma(274;0.000147)|Epithelial(105;0.0291)|all cancers(92;0.0899)	L-Glutamic Acid(DB00142)	GGATCACTACGAATGGAACTG	0.443													21	69					0	0	0.00229938	0	0
GUCY1A2	2977	broad.mit.edu	37	11	106558458	106558458	+	Silent	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr11:106558458G>A	uc001pjg.1	-	8	2406	c.2016C>T	c.(2014-2016)TTC>TTT	p.F672F	GUCY1A2_uc010rvo.1_Silent_p.F693F|GUCY1A2_uc009yxn.1_Silent_p.F703F	NM_000855	NP_000846	P33402	GCYA2_HUMAN	guanylate cyclase 1, soluble, alpha 2	672					intracellular signal transduction|platelet activation	cytoplasm	GTP binding|guanylate cyclase activity|heme binding			large_intestine(3)|lung(2)|pancreas(2)|ovary(1)	8		all_epithelial(67;3.66e-05)|Melanoma(852;0.000382)|Acute lymphoblastic leukemia(157;0.001)|all_hematologic(158;0.0017)|Breast(348;0.026)|all_neural(303;0.068)		BRCA - Breast invasive adenocarcinoma(274;8.04e-05)|Epithelial(105;0.0036)|all cancers(92;0.0476)		GAATGAATGTGAAACTTTCTT	0.408													23	110					0	0	0.000586117	0	0
DIXDC1	85458	broad.mit.edu	37	11	111855995	111855995	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr11:111855995G>A	uc001pml.2	+	9	1255	c.958G>A	c.(958-960)GAG>AAG	p.E320K	DIXDC1_uc001pmm.2_Missense_Mutation_p.E109K|DIXDC1_uc001pmn.2_Missense_Mutation_p.E26K	NM_001037954	NP_001033043	Q155Q3	DIXC1_HUMAN	DIX domain containing 1 isoform a	320	Potential.				multicellular organismal development|positive regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	cytosol|focal adhesion	actin binding|gamma-tubulin binding|signal transducer activity			ovary(1)	1		all_cancers(61;7.58e-15)|all_epithelial(67;5.42e-09)|Melanoma(852;1.91e-06)|all_hematologic(158;0.000405)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0112)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)		Epithelial(105;2.99e-07)|BRCA - Breast invasive adenocarcinoma(274;6.72e-07)|all cancers(92;6.25e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.0548)		AGATGAACAGGAGAGGCCCTT	0.438													4	16					0	0	0.000602214	0	0
APOA4	337	broad.mit.edu	37	11	116691864	116691864	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr11:116691864G>A	uc001pps.1	-	3	1014	c.910C>T	c.(910-912)CGA>TGA	p.R304*		NM_000482	NP_000473			apolipoprotein A-IV precursor												0	all_hematologic(175;0.0487)	Breast(348;0.0126)|Medulloblastoma(222;0.0425)|all_hematologic(158;0.0564)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;8.54e-06)|Epithelial(105;1.62e-05)|all cancers(92;0.000165)|OV - Ovarian serous cystadenocarcinoma(223;0.148)		ACCCGGCGTCGGAACTCCTCC	0.652													37	260					0	0	0.00170553	0	0
CEP164	22897	broad.mit.edu	37	11	117261579	117261579	+	Missense_Mutation	SNP	G	A	A	rs142184414	byFrequency	TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr11:117261579G>A	uc001prc.2	+	16	2168	c.2021G>A	c.(2020-2022)CGA>CAA	p.R674Q	CEP164_uc001prb.2_Missense_Mutation_p.R677Q|CEP164_uc010rxk.1_Missense_Mutation_p.R648Q|CEP164_uc001prf.2_RNA|CEP164_uc009yzp.1_RNA|CEP164_uc001prg.1_Missense_Mutation_p.R107Q	NM_014956	NP_055771	Q9UPV0	CE164_HUMAN	centrosomal protein 164kDa	674	Glu-rich.				cell division|DNA repair|G2/M transition of mitotic cell cycle|mitosis	centriole|cytosol|nucleus				ovary(1)|central_nervous_system(1)	2	all_hematologic(175;0.0487)	Breast(348;0.00908)|Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;4e-05)|Epithelial(105;0.0008)		TCCTGGCTCCGAGCTCAGGTC	0.597													7	54					0	0	0.00198382	0	0
DSCAML1	57453	broad.mit.edu	37	11	117651359	117651359	+	Silent	SNP	C	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr11:117651359C>A	uc001prh.1	-	2	395	c.393G>T	c.(391-393)CCG>CCT	p.P131P	DSCAML1_uc001pri.1_5'UTR	NM_020693	NP_065744	Q8TD84	DSCL1_HUMAN	Down syndrome cell adhesion molecule like 1	71	Extracellular (Potential).|Ig-like C2-type 1.				axonogenesis|brain development|cell fate determination|dorsal/ventral pattern formation|embryonic skeletal system morphogenesis|homophilic cell adhesion	cell surface|integral to membrane|plasma membrane	protein homodimerization activity			ovary(3)|large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)	8	all_hematologic(175;0.0487)	Breast(348;0.0424)|Medulloblastoma(222;0.0523)|all_hematologic(192;0.232)		BRCA - Breast invasive adenocarcinoma(274;9.12e-06)|Epithelial(105;0.00172)		GCCGGATGTGCGGCACGTCGT	0.667													7	104					0.000157383	0.000619487	0.000157383	1	0
AMICA1	120425	broad.mit.edu	37	11	118074365	118074365	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr11:118074365G>A	uc001psk.2	-	6	724	c.550C>T	c.(550-552)CGT>TGT	p.R184C	AMICA1_uc001psg.2_5'UTR|AMICA1_uc001psh.2_Missense_Mutation_p.R145C|AMICA1_uc009yzw.1_RNA|AMICA1_uc001psi.2_Missense_Mutation_p.R174C|AMICA1_uc001psj.2_Missense_Mutation_p.R173C|AMICA1_uc010rxw.1_Missense_Mutation_p.R145C|AMICA1_uc010rxx.1_Missense_Mutation_p.R184C|AMICA1_uc001psl.1_Missense_Mutation_p.R140C	NM_001098526	NP_001091996	Q86YT9	JAML1_HUMAN	adhesion molecule, interacts with CXADR antigen	184	Ig-like V-type 2.|Extracellular (Potential).				blood coagulation|cell adhesion|leukocyte migration|regulation of immune response	cell junction|integral to membrane				ovary(1)	1	all_hematologic(175;0.046)	Medulloblastoma(222;0.0425)|Breast(348;0.181)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;3.4e-05)		TGGTAGTAACGAAATACAATC	0.502													5	43					0	0	0.00116845	0	0
PHLDB1	23187	broad.mit.edu	37	11	118498078	118498078	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr11:118498078C>T	uc001ptr.1	+	7	892	c.539C>T	c.(538-540)CCC>CTC	p.P180L	PHLDB1_uc010ryh.1_Missense_Mutation_p.P179L|PHLDB1_uc001pts.2_Missense_Mutation_p.P180L|PHLDB1_uc001ptt.2_Missense_Mutation_p.P180L|PHLDB1_uc001ptu.1_RNA|PHLDB1_uc001ptv.1_5'UTR|PHLDB1_uc001ptw.1_5'Flank	NM_015157	NP_055972	Q86UU1	PHLB1_HUMAN	pleckstrin homology-like domain, family B,	180											0	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0523)|all_hematologic(192;0.0735)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;3.4e-05)		ACACGGGGACCCTCTGCCTGT	0.542													8	42					0	0	0.000274275	0	0
HYOU1	10525	broad.mit.edu	37	11	118922275	118922276	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr11:118922275_118922276CC>TT	uc001puu.2	-	13	1593_1594	c.1400_1401GG>AA	c.(1399-1401)CGG>CAA	p.R467Q	HYOU1_uc001put.2_Missense_Mutation_p.R432Q|HYOU1_uc010ryu.1_Missense_Mutation_p.R487Q|HYOU1_uc010ryv.1_Missense_Mutation_p.R356Q|HYOU1_uc001pux.3_Missense_Mutation_p.R467Q|HYOU1_uc010ryw.1_RNA|HYOU1_uc001puw.1_Missense_Mutation_p.R467Q	NM_006389	NP_006380	Q9Y4L1	HYOU1_HUMAN	hypoxia up-regulated 1 precursor	467						endoplasmic reticulum lumen	ATP binding|protein binding				0	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)|all_hematologic(192;0.207)		BRCA - Breast invasive adenocarcinoma(274;7.78e-05)		AGAAGAGTACCCGTTTATTGTG	0.54													7	44					0	0	6.4e-05	0	0
OR10S1	219873	broad.mit.edu	37	11	123847469	123847469	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr11:123847469C>T	uc001pzm.1	-	1	930	c.930G>A	c.(928-930)AAG>AAA	p.K310K		NM_001004474	NP_001004474	Q8NGN2	O10S1_HUMAN	olfactory receptor, family 10, subfamily S,	310	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0399)		GCAGAGCATGCTTCACCTCCT	0.527													8	47					0	0	0.000442599	0	0
OR8B12	219858	broad.mit.edu	37	11	124413287	124413287	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr11:124413287C>T	uc010sam.1	-	1	264	c.264G>A	c.(262-264)AAG>AAA	p.K88K		NM_001005195	NP_001005195	Q8NGG6	OR8BC_HUMAN	olfactory receptor, family 8, subfamily B,	88	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)|skin(1)	3		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0213)		AAATGATGTTCTTCCTTGAGA	0.433													7	64					0	0	0.000157383	0	0
OR8A1	390275	broad.mit.edu	37	11	124440858	124440858	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr11:124440858C>T	uc010san.1	+	1	894	c.894C>T	c.(892-894)ATC>ATT	p.I298I		NM_001005194	NP_001005194	Q8NGG7	OR8A1_HUMAN	olfactory receptor, family 8, subfamily A,	298	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0214)		CCACGGTAATCCCCATGTTGA	0.448													7	30					0	0	0.000157383	0	0
CD163L1	283316	broad.mit.edu	37	12	7585054	7585054	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr12:7585054G>A	uc001qsy.2	-	4	750	c.724C>T	c.(724-726)CAT>TAT	p.H242Y	CD163L1_uc010sge.1_Missense_Mutation_p.H252Y	NM_174941	NP_777601	Q9NR16	C163B_HUMAN	scavenger receptor cysteine-rich type 1	242	SRCR 2.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	scavenger receptor activity			ovary(8)|skin(2)|central_nervous_system(1)	11						CTGCAGTCATGATTTCCCCAT	0.423													10	52					0	0	0.000673444	0	0
SLC2A14	144195	broad.mit.edu	37	12	7982503	7982503	+	Silent	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr12:7982503G>A	uc001qtk.2	-	10	1234	c.441C>T	c.(439-441)GGC>GGT	p.G147G	SLC2A14_uc001qtl.2_Silent_p.G124G|SLC2A14_uc001qtm.2_Silent_p.G124G|SLC2A14_uc010sgg.1_Silent_p.G38G|SLC2A14_uc001qtn.2_Silent_p.G147G|SLC2A14_uc001qto.2_Intron|SLC2A14_uc010sgh.1_Silent_p.G162G	NM_153449	NP_703150	Q8TDB8	GTR14_HUMAN	glucose transporter 14	147	Extracellular (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane	glucose transmembrane transporter activity			ovary(1)	1				Kidney(36;0.0883)		TAACCAAGCGGCCCAGGATCA	0.532													7	31					0	0	0.000442599	0	0
LRP6	4040	broad.mit.edu	37	12	12334049	12334050	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr12:12334049_12334050CC>AA	uc001rah.3	-	6	1442_1443	c.1300_1301GG>TT	c.(1300-1302)GGG>TTG	p.G434L	BCL2L14_uc001raf.1_Intron|LRP6_uc010shl.1_Missense_Mutation_p.G434L	NM_002336	NP_002327	O75581	LRP6_HUMAN	low density lipoprotein receptor-related protein	434	Extracellular (Potential).|LDL-receptor class B 7.|Beta-propeller 2.				cellular response to cholesterol|negative regulation of protein phosphorylation|negative regulation of protein serine/threonine kinase activity|negative regulation of smooth muscle cell apoptosis|neural crest formation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell cycle|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway involved in dorsal/ventral axis specification|Wnt receptor signaling pathway involved in dorsal/ventral axis specification	cell surface|cytoplasmic vesicle|endoplasmic reticulum|integral to membrane|plasma membrane	coreceptor activity|frizzled binding|kinase inhibitor activity|low-density lipoprotein receptor activity|protein homodimerization activity|toxin transporter activity|Wnt-protein binding			lung(4)|skin(4)|ovary(2)|kidney(1)|central_nervous_system(1)	12		Prostate(47;0.0865)				CCTCATGGTCCCATTGAGCCTT	0.45													11	524					0	0	6.4e-05	0	0
LST-3TM12	338821	broad.mit.edu	37	12	21172247	21172247	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr12:21172247G>A	uc010sin.1	+	2	151	c.151G>A	c.(151-153)GGA>AGA	p.G51R	SLCO1B3_uc010sil.1_Intron|LST-3TM12_uc010sim.1_Intron	NM_001009562	NP_001009562	Q71QF0	Q71QF0_HUMAN	liver-specific organic anion transporter 3TM12	51						membrane	transporter activity				0						GAAGTTAATTGGAATTGGTTG	0.328													10	44					0	0	0.000442599	0	0
CMAS	55907	broad.mit.edu	37	12	22199428	22199428	+	Missense_Mutation	SNP	A	G	G			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr12:22199428A>G	uc001rfm.2	+	1	270	c.191A>G	c.(190-192)AAG>AGG	p.K64R	CMAS_uc001rfn.2_RNA	NM_018686	NP_061156	Q8NFW8	NEUA_HUMAN	cytidine monophospho-N-acetylneuraminic acid	64					lipopolysaccharide biosynthetic process	nucleus	N-acylneuraminate cytidylyltransferase activity			ovary(1)|pancreas(1)|skin(1)	3						AAGAACATTAAGCACCTGGCG	0.692													3	14					0	0	6.4e-05	0	0
SFRS2IP	9169	broad.mit.edu	37	12	46320763	46320763	+	Silent	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr12:46320763G>A	uc001rox.2	-	11	3008	c.2721C>T	c.(2719-2721)TCC>TCT	p.S907S	SFRS2IP_uc001row.2_Silent_p.S592S|SFRS2IP_uc001roy.1_Silent_p.S981S	NM_004719	NP_004710	Q99590	SCAFB_HUMAN	splicing factor, arginine/serine-rich 2,	907	Arg-rich.				spliceosome assembly	nucleus	protein binding|zinc ion binding				0	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.209)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.1)		TCTGGGACCTGGATTTTTCTC	0.453													7	99					0	0	0.000274275	0	0
MFSD5	84975	broad.mit.edu	37	12	53647900	53647900	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr12:53647900C>T	uc001sci.1	+	2	1472	c.1281C>T	c.(1279-1281)TTC>TTT	p.F427F	MFSD5_uc001sch.1_Silent_p.F534F	NM_032889	NP_116278	Q6N075	MFSD5_HUMAN	major facilitator superfamily domain containing	427	Helical; (Potential).				transport	integral to membrane				skin(2)|ovary(1)	3						TGGGACTCTTCACCGTGGTAA	0.542													9	56					0	0	0.000442599	0	0
OR6C74	254783	broad.mit.edu	37	12	55641806	55641806	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr12:55641806C>T	uc010spg.1	+	1	735	c.735C>T	c.(733-735)GTC>GTT	p.V245V		NM_001005490	NP_001005490	A6NCV1	O6C74_HUMAN	olfactory receptor, family 6, subfamily C,	245	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1						ACATGGTGGTCGTGTCCATTT	0.388													7	98					0	0	0.000157383	0	0
KIF5A	3798	broad.mit.edu	37	12	57969485	57969486	+	Silent	DNP	CC	TT	TT			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr12:57969485_57969486CC>TT	uc001sor.1	+	17	2176_2177	c.1968_1969CC>TT	c.(1966-1971)CACCTG>CATTTG	p.656_657HL>HL	KIF5A_uc010srr.1_Silent_p.567_568HL>HL	NM_004984	NP_004975	Q12840	KIF5A_HUMAN	kinesin family member 5A	656_657					blood coagulation|cell death|microtubule-based movement|synaptic transmission	cytosol|kinesin complex|membrane fraction|microtubule|perinuclear region of cytoplasm	ATP binding|microtubule motor activity			ovary(2)|skin(1)	3						AGAAGCGGCACCTGGAAGAGTC	0.554													16	137					0	0	6.4e-05	0	0
PPM1H	57460	broad.mit.edu	37	12	63114014	63114014	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr12:63114014C>T	uc001srk.3	-	6	1159	c.1010G>A	c.(1009-1011)AGG>AAG	p.R337K		NM_020700	NP_065751	Q9ULR3	PPM1H_HUMAN	protein phosphatase 1H (PP2C domain containing)	337	PP2C-like.						phosphoprotein phosphatase activity			lung(3)|ovary(1)	4			GBM - Glioblastoma multiforme(1;0.000443)|BRCA - Breast invasive adenocarcinoma(9;0.209)	GBM - Glioblastoma multiforme(28;0.0126)		CTGTACTCTCCTTGGAAACTC	0.428													14	133					0	0	0.000422831	0	0
WIF1	11197	broad.mit.edu	37	12	65514233	65514233	+	Silent	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr12:65514233G>A	uc001ssk.2	-	2	397	c.252C>T	c.(250-252)ATC>ATT	p.I84I		NM_007191	NP_009122	Q9Y5W5	WIF1_HUMAN	WNT inhibitory factor 1 precursor	84	WIF.				multicellular organismal development|Wnt receptor signaling pathway	extracellular region	protein tyrosine kinase activity			ovary(2)|lung(1)|skin(1)	4			LUAD - Lung adenocarcinoma(6;0.0234)|LUSC - Lung squamous cell carcinoma(43;0.0975)	GBM - Glioblastoma multiforme(28;0.0231)		TCATGGAATGGATATTGACAG	0.403			T	HMGA2	pleomorphic salivary gland adenoma								15	109					0	0	0.00244969	0	0
PPFIA2	8499	broad.mit.edu	37	12	81741500	81741500	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr12:81741500C>T	uc001szo.1	-	18	2205	c.2044G>A	c.(2044-2046)GAA>AAA	p.E682K	PPFIA2_uc010sue.1_Intron|PPFIA2_uc010sug.1_RNA|PPFIA2_uc010suh.1_RNA|PPFIA2_uc010sui.1_RNA|PPFIA2_uc010suj.1_RNA|PPFIA2_uc009zsi.1_RNA|PPFIA2_uc010suf.1_RNA|PPFIA2_uc009zsh.2_RNA	NM_003625	NP_003616	B7Z663	B7Z663_HUMAN	PTPRF interacting protein alpha 2	608										ovary(3)|lung(2)|pancreas(1)	6						ACTCTATTTTCAATTTCTTCA	0.418													7	87					0	0	0.000274275	0	0
C12orf63	374467	broad.mit.edu	37	12	97147664	97147664	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr12:97147664C>T	uc001tet.1	+	23	3181	c.3103C>T	c.(3103-3105)CTT>TTT	p.L1035F		NM_198520	NP_940922	Q6ZTY8	CL063_HUMAN	hypothetical protein LOC374467	1035								p.L1035P(1)		skin(6)|ovary(1)	7						AGCTGAAATCCTTTTTCAGAA	0.423													6	47					0	0	0.00116845	0	0
STAB2	55576	broad.mit.edu	37	12	104111553	104111553	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr12:104111553C>T	uc001tjw.2	+	44	4803	c.4617C>T	c.(4615-4617)GCC>GCT	p.A1539A	STAB2_uc009zug.2_RNA	NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	1539	Extracellular (Potential).|EGF-like 13.				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						GACAGGCTGCCTGTAACTGTT	0.507													16	156					0	0	0.000566183	0	0
ALKBH2	121642	broad.mit.edu	37	12	109530455	109530455	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr12:109530455G>A	uc001tnx.2	-	2	530	c.137C>T	c.(136-138)CCA>CTA	p.P46L	ALKBH2_uc001tny.2_Missense_Mutation_p.P46L|ALKBH2_uc010sxj.1_Missense_Mutation_p.P46L|ALKBH2_uc009zvd.2_Missense_Mutation_p.P46L|ALKBH2_uc010sxk.1_Missense_Mutation_p.P46L	NM_001145374	NP_001138846	Q6NS38	ALKB2_HUMAN	AlkB homolog 2	46					DNA dealkylation involved in DNA repair|oxidative DNA demethylation	nucleoplasm	cytosine C-5 DNA demethylase activity|damaged DNA binding|DNA-N1-methyladenine dioxygenase activity|ferrous iron binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen				0					Vitamin C(DB00126)	TCCATTCCCTGGGGCCTCTCT	0.582								Direct_reversal_of_damage					20	113					0	0	0.00121646	0	0
KSR2	283455	broad.mit.edu	37	12	118198993	118198993	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr12:118198993G>A	uc001two.2	-	4	777	c.722C>T	c.(721-723)ACC>ATC	p.T241I		NM_173598	NP_775869	Q6VAB6	KSR2_HUMAN	kinase suppressor of ras 2	270	Pro-rich.				intracellular signal transduction	cytoplasm|membrane	ATP binding|metal ion binding|protein serine/threonine kinase activity			lung(10)|central_nervous_system(2)|stomach(1)|large_intestine(1)|breast(1)	15	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					CGGGGTCACGGTGGTGACGAT	0.721													23	167					0	0	0.00047179	0	0
VSIG10	54621	broad.mit.edu	37	12	118517355	118517355	+	Silent	SNP	A	G	G			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr12:118517355A>G	uc001tws.2	-	4	1055	c.721T>C	c.(721-723)TTG>CTG	p.L241L		NM_019086	NP_061959	Q8N0Z9	VSI10_HUMAN	V-set and immunoglobulin domain containing 10	241	Ig-like C2-type 3.|Extracellular (Potential).					integral to membrane					0						GTAAGCTGCAACATGAACGAT	0.552													14	65					0	0	0.000308642	0	0
DNAH10	196385	broad.mit.edu	37	12	124350550	124350550	+	Missense_Mutation	SNP	T	C	C			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr12:124350550T>C	uc001uft.3	+	40	6768	c.6743T>C	c.(6742-6744)GTT>GCT	p.V2248A		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	2248	AAA 2 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		TGTGGAATGGTTTATGTGGAT	0.333													7	73					0	0	0.000274275	0	0
PIWIL1	9271	broad.mit.edu	37	12	130847340	130847340	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr12:130847340G>A	uc001uik.2	+	17	2090	c.2000G>A	c.(1999-2001)AGA>AAA	p.R667K	PIWIL1_uc001uij.1_Missense_Mutation_p.R667K	NM_004764	NP_004755	Q96J94	PIWL1_HUMAN	piwi-like 1	667	RNA-binding (By similarity).|Piwi.				gene silencing by RNA|meiosis|multicellular organismal development|regulation of translation|spermatid development	chromatoid body|P granule	mRNA binding|piRNA binding|protein binding			ovary(2)	2	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;3.02e-06)|Epithelial(86;3.85e-05)|all cancers(50;4.65e-05)		TTTCAGGATAGAGGACAGGAG	0.423													9	50					0	0	0.000274275	0	0
POLE	5426	broad.mit.edu	37	12	133233953	133233953	+	Silent	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr12:133233953G>A	uc001uks.1	-	28	3485	c.3441C>T	c.(3439-3441)ATC>ATT	p.I1147I	POLE_uc001ukr.1_5'UTR|POLE_uc010tbq.1_RNA|POLE_uc009zyu.1_Silent_p.I1120I	NM_006231	NP_006222	Q07864	DPOE1_HUMAN	DNA-directed DNA polymerase epsilon	1147					base-excision repair, gap-filling|DNA synthesis involved in DNA repair|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|nucleotide-excision repair, DNA gap filling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	nucleoplasm	chromatin binding|DNA binding|DNA-directed DNA polymerase activity|nucleotide binding|protein binding|zinc ion binding			ovary(3)|skin(3)|lung(1)|central_nervous_system(1)	8	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0416)		OV - Ovarian serous cystadenocarcinoma(86;5.22e-08)|Epithelial(86;4.03e-07)|all cancers(50;1.18e-05)		GGGCCGCAGGGATGGTGATGA	0.577								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					7	50					0	0	0.000157383	0	0
SACS	26278	broad.mit.edu	37	13	23904564	23904564	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr13:23904564G>A	uc001uon.2	-	10	14040	c.13451C>T	c.(13450-13452)GCT>GTT	p.A4484V	SACS_uc001uoo.2_Missense_Mutation_p.A4337V|SACS_uc001uop.1_Intron|SACS_uc001uoq.1_Intron	NM_014363	NP_055178	Q9NZJ4	SACS_HUMAN	sacsin	4484	HEPN.				cell death|negative regulation of inclusion body assembly|protein folding	axon|cell body fiber|dendrite|mitochondrion|nucleus	ATP binding|chaperone binding|Hsp70 protein binding|proteasome binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		all_cancers(29;1.51e-22)|all_epithelial(30;7.82e-19)|all_lung(29;4.71e-18)|Lung SC(185;0.0225)|Breast(139;0.128)		all cancers(112;0.00197)|Epithelial(112;0.00854)|OV - Ovarian serous cystadenocarcinoma(117;0.0298)|Lung(94;0.189)		TGCAATCAAAGCTAACTTGGT	0.408													17	135					0	0	0.00074312	0	0
C1QTNF9B	387911	broad.mit.edu	37	13	24470978	24470978	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr13:24470978C>T	uc010tcw.1	-	1	148	c.148G>A	c.(148-150)GGT>AGT	p.G50S	C1QTNF9B_uc010tcv.1_Silent_p.R13R|C1QTNF9B_uc001uoz.1_Missense_Mutation_p.G50S|C1QTNF9B_uc010tcx.1_Missense_Mutation_p.G50S	NM_001007537	NP_001007538	B2RNN3	C1T9B_HUMAN	C1q and tumor necrosis factor related protein 9B	50	Collagen-like 1.					collagen					0						CCTTTGTCACCCTTCGCTCCG	0.532													5	28					0	0	0.000274275	0	0
CENPJ	55835	broad.mit.edu	37	13	25484108	25484108	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr13:25484108C>T	uc001upt.3	-	4	938	c.685G>A	c.(685-687)GAA>AAA	p.E229K	CENPJ_uc010tdf.1_RNA|CENPJ_uc010aae.2_RNA|CENPJ_uc010aaf.2_RNA	NM_018451	NP_060921	Q9HC77	CENPJ_HUMAN	centromere protein J	229					cell division|centriole replication|G2/M transition of mitotic cell cycle|microtubule nucleation|microtubule polymerization	centriole|cytosol|gamma-tubulin small complex|microtubule	protein domain specific binding|tubulin binding			ovary(2)	2		Lung SC(185;0.0225)|Breast(139;0.0602)		all cancers(112;0.00793)|Epithelial(112;0.0411)|OV - Ovarian serous cystadenocarcinoma(117;0.139)		TATGTTTCTTCCTGGGTTGGG	0.473													19	104					0	0	0.00121646	0	0
PABPC3	5042	broad.mit.edu	37	13	25671984	25671984	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr13:25671984C>T	uc001upy.2	+	1	1709	c.1648C>T	c.(1648-1650)CCT>TCT	p.P550S		NM_030979	NP_112241	Q9H361	PABP3_HUMAN	poly(A) binding protein, cytoplasmic 3	550	PABC.				mRNA metabolic process	cytoplasm	nucleotide binding|poly(A) RNA binding			ovary(3)|skin(1)	4		Lung SC(185;0.0225)|Breast(139;0.0602)		all cancers(112;0.0071)|Epithelial(112;0.0398)|OV - Ovarian serous cystadenocarcinoma(117;0.151)|GBM - Glioblastoma multiforme(144;0.222)|Lung(94;0.241)		ATCTGCCCCTCCTCAAAAGCA	0.468													14	99					0	0	0.000308642	0	0
ATP8A2	51761	broad.mit.edu	37	13	26152961	26152961	+	Silent	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr13:26152961G>A	uc001uqk.2	+	21	1933	c.1791G>A	c.(1789-1791)GTG>GTA	p.V597V	ATP8A2_uc010tdi.1_Silent_p.V557V|ATP8A2_uc010tdj.1_RNA|ATP8A2_uc010aaj.1_Silent_p.V107V	NM_016529	NP_057613	Q9NTI2	AT8A2_HUMAN	ATPase, aminophospholipid transporter-like,	557	Cytoplasmic (Potential).				ATP biosynthetic process|negative regulation of cell proliferation	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(2)|large_intestine(1)|skin(1)	4		Breast(139;0.0201)|Lung SC(185;0.0225)		all cancers(112;0.043)|OV - Ovarian serous cystadenocarcinoma(117;0.0748)|Epithelial(112;0.079)		AGGATAATGTGATTTTTGAGA	0.373													5	32					0	0	0.00116845	0	0
KIAA0564	23078	broad.mit.edu	37	13	42142384	42142384	+	Silent	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr13:42142384G>A	uc001uyj.2	-	45	5737	c.5667C>T	c.(5665-5667)ATC>ATT	p.I1889I		NM_015058	NP_055873	A3KMH1	K0564_HUMAN	hypothetical protein LOC23078 isoform a	1889	VWFA.					extracellular region	ATP binding|ATPase activity			ovary(3)|upper_aerodigestive_tract(1)|kidney(1)|skin(1)	6		Lung NSC(96;4.61e-06)|Prostate(109;0.0167)|Lung SC(185;0.0262)|Breast(139;0.0854)|Hepatocellular(98;0.114)		OV - Ovarian serous cystadenocarcinoma(117;0.000368)|GBM - Glioblastoma multiforme(144;0.0033)|BRCA - Breast invasive adenocarcinoma(63;0.0969)		AAATCTGAGGGATATCCTTGG	0.468													11	75					0	0	0.000673444	0	0
EPSTI1	94240	broad.mit.edu	37	13	43462503	43462503	+	Silent	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr13:43462503G>A	uc001uyw.1	-	13	1192	c.1116C>T	c.(1114-1116)GAC>GAT	p.D372D	EPSTI1_uc001uyx.1_3'UTR	NM_001002264	NP_001002264	Q96J88	ESIP1_HUMAN	epithelial stromal interaction 1 isoform 1	Error:Variant_position_missing_in_Q96J88_after_alignment										ovary(1)	1		Lung NSC(96;3.6e-06)|Breast(139;0.00869)|Prostate(109;0.0181)|Lung SC(185;0.0262)|Hepatocellular(98;0.114)		GBM - Glioblastoma multiforme(144;0.000528)|BRCA - Breast invasive adenocarcinoma(63;0.0858)		TGACTGCACGGTCAAGTGTGT	0.428													15	41					0	0	0.000308642	0	0
LOC220429	220429	broad.mit.edu	37	13	50466908	50466908	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr13:50466908G>A	uc001vdk.2	+	1	2364	c.2182G>A	c.(2182-2184)GGA>AGA	p.G728R		NR_003268				Homo sapiens CTAGE family, member 5 pseudogene, mRNA (cDNA clone IMAGE:5270026).												0						AACCATGTTTGGAGCTTCTCC	0.517													10	49					0	0	0.000978159	0	0
DIAPH3	81624	broad.mit.edu	37	13	60545066	60545066	+	Silent	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr13:60545066G>A	uc001vht.2	-	16	2098	c.1879C>T	c.(1879-1881)CTA>TTA	p.L627L	DIAPH3_uc001vhu.2_Silent_p.L364L|DIAPH3_uc001vhv.2_Silent_p.L205L	NM_001042517	NP_001035982	Q9NSV4	DIAP3_HUMAN	diaphanous homolog 3 isoform a	627	FH1.|Pro-rich.				actin cytoskeleton organization		actin binding|Rho GTPase binding			ovary(2)	2		Breast(118;0.052)|Prostate(109;0.103)|Hepatocellular(98;0.132)		GBM - Glioblastoma multiforme(99;2.77e-05)		AGGATTGGTAGAGGAGGAGAA	0.458													5	77					0	0	0.00116845	0	0
MYCBP2	23077	broad.mit.edu	37	13	77672557	77672557	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr13:77672557G>A	uc001vkf.2	-	57	8709	c.8618C>T	c.(8617-8619)TCC>TTC	p.S2873F	MYCBP2_uc010aev.2_Missense_Mutation_p.S2277F|MYCBP2_uc001vkg.1_Missense_Mutation_p.S396F|MYCBP2_uc010aew.2_Missense_Mutation_p.S259F	NM_015057	NP_055872	O75592	MYCB2_HUMAN	MYC binding protein 2	2873					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ligase activity|protein binding|zinc ion binding			ovary(4)|breast(4)|skin(3)|lung(2)|pancreas(1)	14		Breast(118;0.212)|Acute lymphoblastic leukemia(28;0.22)		GBM - Glioblastoma multiforme(99;0.109)		AGATCCAGGGGAATCTGTAGA	0.468													7	56					0	0	0.00198382	0	0
ABCC4	10257	broad.mit.edu	37	13	95858972	95858972	+	Silent	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr13:95858972G>A	uc001vmd.3	-	8	1094	c.975C>T	c.(973-975)TTC>TTT	p.F325F	ABCC4_uc010afk.2_Silent_p.F325F|ABCC4_uc001vme.2_Silent_p.F325F|ABCC4_uc010tih.1_Silent_p.F250F|ABCC4_uc001vmf.2_Silent_p.F282F|ABCC4_uc010afl.1_Silent_p.F282F|ABCC4_uc010afm.1_Silent_p.F338F	NM_005845	NP_005836	O15439	MRP4_HUMAN	ATP-binding cassette, sub-family C, member 4	325	ABC transmembrane type-1 1.				platelet activation|platelet degranulation	integral to membrane|membrane fraction|plasma membrane|platelet dense granule membrane	15-hydroxyprostaglandin dehydrogenase (NAD+) activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|chloride channel activity			central_nervous_system(3)|skin(1)	4	all_neural(89;0.0878)|Medulloblastoma(90;0.163)				Cefazolin(DB01327)	TGCTTGCACTGAAAAATGAAG	0.473													17	162					0	0	0.00074312	0	0
DZIP1	22873	broad.mit.edu	37	13	96293836	96293836	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr13:96293836C>T	uc001vmk.2	-	5	1162	c.310G>A	c.(310-312)GAG>AAG	p.E104K	DZIP1_uc001vml.2_Missense_Mutation_p.E104K|DZIP1_uc001vmn.2_Missense_Mutation_p.E93K	NM_198968	NP_945319	Q86YF9	DZIP1_HUMAN	DAZ interacting protein 1 isoform 2	104					germ cell development|multicellular organismal development|spermatogenesis	cytoplasm|nucleus	nucleic acid binding|protein binding|zinc ion binding			ovary(2)	2	all_neural(89;0.0878)|Breast(111;0.148)|Medulloblastoma(90;0.163)		BRCA - Breast invasive adenocarcinoma(86;0.141)			GGGCACTTCTCGTCTTCCAGC	0.602													12	66					0	0	0.00185496	0	0
UBAC2	337867	broad.mit.edu	37	13	100020040	100020041	+	Splice_Site	DNP	GG	AA	AA			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr13:100020040_100020041GG>AA	uc001voa.3	+	8	1292	c.808_splice	c.e8-1	p.G270_splice	UBAC2_uc010tiu.1_Splice_Site_p.G292_splice|UBAC2_uc001vob.3_Splice_Site_p.G243_splice|UBAC2_uc010tiv.1_Splice_Site|UBAC2_uc001vod.2_Splice_Site_p.G157_splice|UBAC2_uc001voc.2_Splice_Site_p.G235_splice|UBAC2_uc010tiw.1_Splice_Site|UBAC2_uc001voh.2_Splice_Site_p.G74_splice	NM_001144072	NP_001137544	Q8NBM4	UBAC2_HUMAN	UBA domain containing 2 isoform 1							integral to membrane				ovary(1)	1	all_neural(89;0.0837)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)					TCTCTTTTTAGGGAGGAATGAT	0.46													9	73					0	0	6.4e-05	0	0
OR4Q3	441669	broad.mit.edu	37	14	20215844	20215844	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr14:20215844C>T	uc010tkt.1	+	1	258	c.258C>T	c.(256-258)TTC>TTT	p.F86F		NM_172194	NP_751944	Q8NH05	OR4Q3_HUMAN	olfactory receptor, family 4, subfamily Q,	86	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(3)	3	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		TAGGGGATTTCCTACAGCAGG	0.458													5	52					0	0	0.00116845	0	0
OR4N2	390429	broad.mit.edu	37	14	20295781	20295781	+	Silent	SNP	C	T	T	rs141509885	byFrequency	TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr14:20295781C>T	uc010tkv.1	+	1	174	c.174C>T	c.(172-174)CCC>CCT	p.P58P		NM_001004723	NP_001004723	Q8NGD1	OR4N2_HUMAN	olfactory receptor, family 4, subfamily N,	58	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		TCACAGCCCCCCTCTATTTCT	0.463													26	217					0	0	0.000878237	0	0
OR4K5	79317	broad.mit.edu	37	14	20388883	20388883	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr14:20388883C>T	uc010tkw.1	+	1	118	c.118C>T	c.(118-120)CTG>TTG	p.L40L		NM_001005483	NP_001005483	Q8NGD3	OR4K5_HUMAN	olfactory receptor, family 4, subfamily K,	40	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		AGTCATTGTGCTGGGAAATCT	0.403													15	113					0	0	0.000422831	0	0
MYH6	4624	broad.mit.edu	37	14	23863388	23863388	+	Silent	SNP	G	A	A	rs148596692		TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr14:23863388G>A	uc001wjv.2	-	21	2641	c.2574C>T	c.(2572-2574)TTC>TTT	p.F858F		NM_002471	NP_002462	P13533	MYH6_HUMAN	myosin heavy chain 6	858	Potential.				adult heart development|atrial cardiac muscle tissue morphogenesis|cardiac muscle fiber development|in utero embryonic development|muscle filament sliding|regulation of ATPase activity|regulation of blood pressure|regulation of heart rate|regulation of the force of heart contraction|sarcomere organization|striated muscle contraction|ventricular cardiac muscle tissue morphogenesis|visceral muscle development	cytosol|focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|protein kinase binding|structural constituent of muscle			pancreas(2)|ovary(1)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00764)|READ - Rectum adenocarcinoma(4;0.0289)|Colorectal(4;0.0441)		TGATGCGCCCGAACTCTTCCT	0.572													10	70					0	0	0.000978159	0	0
MYH6	4624	broad.mit.edu	37	14	23865537	23865537	+	Silent	SNP	C	G	G			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr14:23865537C>G	uc001wjv.2	-	20	2452	c.2385G>C	c.(2383-2385)CGG>CGC	p.R795R		NM_002471	NP_002462	P13533	MYH6_HUMAN	myosin heavy chain 6	795	IQ.		R -> Q (in CMH14; late onset).		adult heart development|atrial cardiac muscle tissue morphogenesis|cardiac muscle fiber development|in utero embryonic development|muscle filament sliding|regulation of ATPase activity|regulation of blood pressure|regulation of heart rate|regulation of the force of heart contraction|sarcomere organization|striated muscle contraction|ventricular cardiac muscle tissue morphogenesis|visceral muscle development	cytosol|focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|protein kinase binding|structural constituent of muscle			pancreas(2)|ovary(1)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00764)|READ - Rectum adenocarcinoma(4;0.0289)|Colorectal(4;0.0441)		TGAGCTGGCCCCGGGCTTGGG	0.587													8	49					0	0	0.000157383	0	0
KLHDC1	122773	broad.mit.edu	37	14	50199475	50199475	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr14:50199475C>T	uc001www.2	+	9	792	c.764C>T	c.(763-765)CCT>CTT	p.P255L	SDCCAG1_uc010anj.1_Intron|KLHDC1_uc010tqg.1_Missense_Mutation_p.P210L|KLHDC1_uc010tqh.1_Missense_Mutation_p.P170L	NM_172193	NP_751943	Q8N7A1	KLDC1_HUMAN	kelch domain containing 1	255	Kelch 4.					cytoplasm				pancreas(1)	1	all_epithelial(31;0.00244)|Breast(41;0.00964)					ACTTTAACACCTATAGCTGAT	0.333													4	61					0	0	0.000602214	0	0
BMP4	652	broad.mit.edu	37	14	54416795	54416795	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr14:54416795C>T	uc001xal.3	-	3	1369	c.1182G>A	c.(1180-1182)CTG>CTA	p.L394L	BMP4_uc010aoh.2_Silent_p.L394L|BMP4_uc001xao.3_Silent_p.L394L|BMP4_uc001xan.3_Silent_p.L394L	NM_130851	NP_570912	P12644	BMP4_HUMAN	bone morphogenetic protein 4 preproprotein	394					activation of MAPKK activity|blood vessel endothelial cell proliferation involved in sprouting angiogenesis|BMP signaling pathway involved in heart induction|BMP signaling pathway involved in nephric duct formation|branching involved in ureteric bud morphogenesis|bronchus development|bud dilation involved in lung branching|cardiac septum development|cartilage development|endocardial cushion development|epithelial cell proliferation involved in lung morphogenesis|intermediate mesodermal cell differentiation|lung alveolus development|lymphoid progenitor cell differentiation|mesenchymal to epithelial transition involved in metanephros morphogenesis|mesonephros development|negative regulation of branch elongation involved in ureteric bud branching by BMP signaling pathway|negative regulation of branching involved in ureteric bud morphogenesis|negative regulation of cell proliferation involved in heart morphogenesis|negative regulation of glomerular mesangial cell proliferation|negative regulation of glomerulus development|negative regulation of immature T cell proliferation in thymus|negative regulation of MAP kinase activity|negative regulation of metanephric comma-shaped body morphogenesis|negative regulation of metanephric S-shaped body morphogenesis|negative regulation of mitosis|negative regulation of myoblast differentiation|negative regulation of phosphorylation|negative regulation of striated muscle tissue development|negative regulation of thymocyte apoptosis|negative regulation of transcription from RNA polymerase II promoter|osteoblast differentiation|positive regulation of apoptosis|positive regulation of bone mineralization|positive regulation of cardiac muscle fiber development|positive regulation of cartilage development|positive regulation of collagen biosynthetic process|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of kidney development|positive regulation of osteoblast differentiation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of SMAD protein import into nucleus|positive regulation of smooth muscle cell proliferation|positive regulation of transcription from RNA polymerase II promoter|post-embryonic development|protein localization to nucleus|pulmonary artery endothelial tube morphogenesis|secondary heart field specification|SMAD protein signal transduction|specification of ureteric bud anterior/posterior symmetry by BMP signaling pathway|steroid hormone mediated signaling pathway	extracellular space|proteinaceous extracellular matrix	BMP receptor binding|chemoattractant activity|cytokine activity|growth factor activity				0						GATAATTTTTCAGTACCACCT	0.413													7	75					0	0	0.000157383	0	0
RTN1	6252	broad.mit.edu	37	14	60074019	60074019	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr14:60074019C>T	uc001xen.1	-	4	2166	c.1957G>A	c.(1957-1959)GAA>AAA	p.E653K	RTN1_uc001xem.1_Missense_Mutation_p.E233K|RTN1_uc001xek.1_Missense_Mutation_p.E85K|RTN1_uc001xel.1_RNA|RTN1_uc010apl.1_Missense_Mutation_p.E70K	NM_021136	NP_066959	Q16799	RTN1_HUMAN	reticulon 1 isoform A	653	Reticulon.				neuron differentiation	integral to endoplasmic reticulum membrane	signal transducer activity			ovary(2)|central_nervous_system(2)	4				OV - Ovarian serous cystadenocarcinoma(108;0.0968)		GGGTGGCCTTCGTCGGTTTTC	0.562													5	23					0	0	0.00116845	0	0
C14orf135	64430	broad.mit.edu	37	14	60591538	60591538	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr14:60591538C>T	uc001xer.3	+	8	2469	c.1947C>T	c.(1945-1947)TAC>TAT	p.Y649Y	C14orf135_uc001xeq.2_Silent_p.Y649Y|C14orf135_uc010apm.2_RNA	NM_022495	NP_071940	Q63HM2	CN135_HUMAN	hepatitis C virus F protein-binding protein 2	883						integral to membrane				ovary(2)	2		Myeloproliferative disorder(585;0.163)		OV - Ovarian serous cystadenocarcinoma(108;0.127)		TATTAGGATACCCTGCTGTTG	0.413													18	145					0	0	0.00074312	0	0
C14orf39	317761	broad.mit.edu	37	14	60921826	60921826	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr14:60921826C>T	uc001xez.3	-	16	1506	c.1396G>A	c.(1396-1398)GAA>AAA	p.E466K	C14orf39_uc010apo.2_Missense_Mutation_p.E177K	NM_174978	NP_777638	Q08AQ4	Q08AQ4_HUMAN	hypothetical protein LOC317761	466										ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4				OV - Ovarian serous cystadenocarcinoma(108;0.0448)		GATTCCTTTTCTGTTTGAACT	0.299													5	67					0	0	0.00198382	0	0
KCNH5	27133	broad.mit.edu	37	14	63174561	63174561	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr14:63174561C>T	uc001xfx.2	-	11	2683	c.2632G>A	c.(2632-2634)GCT>ACT	p.A878T	KCNH5_uc001xfy.2_3'UTR	NM_139318	NP_647479	Q8NCM2	KCNH5_HUMAN	potassium voltage-gated channel, subfamily H,	878	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	calmodulin binding|two-component sensor activity|voltage-gated potassium channel activity			ovary(4)|skin(4)|central_nervous_system(1)	9				OV - Ovarian serous cystadenocarcinoma(108;0.00958)|BRCA - Breast invasive adenocarcinoma(234;0.168)		GCCTCCCCAGCCTTATCCAAA	0.502													9	72					0	0	0.000442599	0	0
KCNH5	27133	broad.mit.edu	37	14	63174974	63174974	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr14:63174974G>A	uc001xfx.2	-	11	2270	c.2219C>T	c.(2218-2220)TCC>TTC	p.S740F	KCNH5_uc001xfy.2_3'UTR	NM_139318	NP_647479	Q8NCM2	KCNH5_HUMAN	potassium voltage-gated channel, subfamily H,	740	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	calmodulin binding|two-component sensor activity|voltage-gated potassium channel activity			ovary(4)|skin(4)|central_nervous_system(1)	9				OV - Ovarian serous cystadenocarcinoma(108;0.00958)|BRCA - Breast invasive adenocarcinoma(234;0.168)		ATTCTGTAAGGAGCGGCTCTC	0.532													9	71					0	0	0.000274275	0	0
SLC8A3	6547	broad.mit.edu	37	14	70635016	70635016	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr14:70635016C>T	uc001xly.2	-	2	878	c.124G>A	c.(124-126)GGG>AGG	p.G42R	SLC8A3_uc001xlw.2_Missense_Mutation_p.G42R|SLC8A3_uc001xlx.2_Missense_Mutation_p.G42R|SLC8A3_uc001xlz.2_Missense_Mutation_p.G42R|SLC8A3_uc010ara.2_RNA	NM_183002	NP_892114	P57103	NAC3_HUMAN	solute carrier family 8 (sodium/calcium	42	Extracellular (Potential).				cell communication|platelet activation	integral to membrane|plasma membrane	calcium:sodium antiporter activity|calmodulin binding			skin(3)|ovary(2)|breast(2)	7				BRCA - Breast invasive adenocarcinoma(234;0.0079)|all cancers(60;0.0102)|OV - Ovarian serous cystadenocarcinoma(108;0.0555)		TTGTTCTGCCCTGTGCTTGGC	0.562													5	20					0	0	0.000602214	0	0
ADAM20	8748	broad.mit.edu	37	14	70990201	70990201	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr14:70990201G>A	uc001xme.2	-	2	1669	c.1424C>T	c.(1423-1425)ACC>ATC	p.T475I		NM_003814	NP_003805	O43506	ADA20_HUMAN	ADAM metallopeptidase domain 20 preproprotein	425	Disintegrin.|Extracellular (Potential).				proteolysis|single fertilization	integral to membrane	metalloendopeptidase activity|zinc ion binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(12;0.133)|Kidney(31;0.188)	all cancers(60;0.00294)|BRCA - Breast invasive adenocarcinoma(234;0.00668)|OV - Ovarian serous cystadenocarcinoma(108;0.0344)		CTGCCGTATGGTTCCACAGTC	0.433													22	120					0	0	0.000586117	0	0
FCF1	51077	broad.mit.edu	37	14	75200829	75200829	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr14:75200829C>T	uc001xqh.2	+	7	555	c.504C>T	c.(502-504)ATC>ATT	p.I168I	FCF1_uc001xqf.1_Silent_p.I153I|FCF1_uc001xqg.2_RNA|FCF1_uc001xqi.2_RNA	NM_015962	NP_057046	Q9Y324	FCF1_HUMAN	FCF1 small subunit	168					rRNA processing	nucleolus				ovary(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.0037)		AAAGAAGAATCCGTAAGATTC	0.398													5	47					0	0	0.000602214	0	0
C14orf145	145508	broad.mit.edu	37	14	81302605	81302605	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr14:81302605G>A	uc001xux.2	-	11	1172	c.1001C>T	c.(1000-1002)TCC>TTC	p.S334F	C14orf145_uc010asz.1_RNA|C14orf145_uc001xuz.2_Missense_Mutation_p.S334F|C14orf145_uc001xuy.1_Missense_Mutation_p.S192F	NM_152446	NP_689659	Q6ZU80	CE128_HUMAN	hypothetical protein LOC145508	334	Potential.					centriole|spindle pole					0				BRCA - Breast invasive adenocarcinoma(234;0.0586)		CTGTTGCTTGGAAATCTGAGA	0.403													26	100					0	0	0.000878237	0	0
GPR65	8477	broad.mit.edu	37	14	88477602	88477602	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr14:88477602C>T	uc001xvv.2	+	2	941	c.411C>T	c.(409-411)TCC>TCT	p.S137S		NM_003608	NP_003599	Q8IYL9	PSYR_HUMAN	G protein-coupled receptor 65	137	Helical; Name=4; (Potential).				actin cytoskeleton reorganization|activation of Rho GTPase activity|apoptosis|immune response|multicellular organismal development|positive regulation of cAMP biosynthetic process|positive regulation of stress fiber assembly|response to acidity	integral to plasma membrane	G-protein coupled receptor activity				0						TCAGCCTGTCCATCTGGATAT	0.408													15	127					0	0	0.000422831	0	0
PTPN21	11099	broad.mit.edu	37	14	88962767	88962767	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr14:88962767G>A	uc001xwv.3	-	10	1253	c.922C>T	c.(922-924)CAG>TAG	p.Q308*	PTPN21_uc010twc.1_Nonsense_Mutation_p.Q104*|PTPN21_uc010atf.1_Nonsense_Mutation_p.Q308*	NM_007039	NP_008970	Q16825	PTN21_HUMAN	protein tyrosine phosphatase, non-receptor type	308	FERM.					cytoplasm|cytoskeleton	binding|protein tyrosine phosphatase activity			ovary(3)|skin(1)	4						AGGTTACACTGGTTTAGTCTG	0.333													10	68					0	0	0.000673444	0	0
CCDC88C	440193	broad.mit.edu	37	14	91739956	91739956	+	Silent	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr14:91739956G>A	uc010aty.2	-	30	5199	c.5100C>T	c.(5098-5100)TTC>TTT	p.F1700F	CCDC88C_uc001xzj.2_Silent_p.F224F|CCDC88C_uc001xzi.2_Silent_p.F150F	NM_001080414	NP_001073883	Q9P219	DAPLE_HUMAN	DVL-binding protein DAPLE	1700					microtubule cytoskeleton organization|protein destabilization|protein homooligomerization|regulation of protein phosphorylation|Wnt receptor signaling pathway	cytoplasm|insoluble fraction	microtubule binding|PDZ domain binding|protein self-association			ovary(3)	3		all_cancers(154;0.0468)				TGGCCTTTCGGAAGTAGTCAC	0.607													10	41					0	0	0.00185496	0	0
CATSPERB	79820	broad.mit.edu	37	14	92159768	92159768	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr14:92159768C>T	uc001xzs.1	-	8	812	c.672G>A	c.(670-672)TGG>TGA	p.W224*		NM_024764	NP_079040	Q9H7T0	CTSRB_HUMAN	cation channel, sperm-associated, beta	224					cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				breast(2)|skin(2)|ovary(1)	5		all_cancers(154;0.0663)|all_epithelial(191;0.236)				TCATGTTAAACCATGTGGTAT	0.353													9	64					0	0	0.000673444	0	0
KIAA1409	57578	broad.mit.edu	37	14	93954060	93954060	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr14:93954060C>T	uc001ybv.1	+	2	223	c.140C>T	c.(139-141)TCA>TTA	p.S47L	KIAA1409_uc001ybs.1_Missense_Mutation_p.S47L|KIAA1409_uc001ybu.1_Missense_Mutation_p.S47L	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	224						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		CTCTCTGCATCATCCATGCTA	0.388													13	112					0	0	0.000308642	0	0
AHNAK2	113146	broad.mit.edu	37	14	105415514	105415514	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr14:105415514C>T	uc010axc.1	-	7	6394	c.6274G>A	c.(6274-6276)GAC>AAC	p.D2092N	AHNAK2_uc001ypx.2_Missense_Mutation_p.D1992N	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	2092						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			CCCTTGATGTCCACCTGGGGG	0.617													16	55					0	0	0.000422831	0	0
SNORD116-1	100033413	broad.mit.edu	37	15	25296640	25296640	+	RNA	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr15:25296640C>T	uc001yxg.2	+	1		c.18C>T				NR_003316				Homo sapiens small nucleolar RNA, C/D box 116-1 (SNORD116-1), non-coding RNA.												0						ATGATGAGTCCCCTATAAAAA	0.473													6	67					0	0	0.000157383	0	0
PLA2G4F	255189	broad.mit.edu	37	15	42439446	42439446	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr15:42439446C>T	uc001zoz.2	-	13	1358	c.1295G>A	c.(1294-1296)GGA>GAA	p.G432E	PLA2G4F_uc010bcq.2_5'Flank|PLA2G4F_uc001zoy.2_Missense_Mutation_p.G64E|PLA2G4F_uc010bcr.2_Missense_Mutation_p.G183E|PLA2G4F_uc001zpa.2_Missense_Mutation_p.G183E|PLA2G4F_uc010bcs.2_Missense_Mutation_p.G219E	NM_213600	NP_998765	Q68DD2	PA24F_HUMAN	phospholipase A2, group IVF	432	PLA2c.				phospholipid catabolic process	cytosol|lysosomal membrane	metal ion binding|phospholipase A2 activity			ovary(4)	4		all_cancers(109;4.82e-12)|all_epithelial(112;5.64e-11)|Lung NSC(122;2.17e-07)|all_lung(180;8.79e-07)|Melanoma(134;0.091)		GBM - Glioblastoma multiforme(94;8.97e-07)		GGACAAAGCTCCCATCTTACT	0.627													9	24					0	0	0.000673444	0	0
STRC	161497	broad.mit.edu	37	15	43893725	43893725	+	Missense_Mutation	SNP	G	A	A	rs147990592		TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr15:43893725G>A	uc001zsf.2	-	24	4648	c.4570C>T	c.(4570-4572)CGT>TGT	p.R1524C	STRC_uc010bdl.2_Missense_Mutation_p.R751C|STRC_uc001zse.2_Missense_Mutation_p.R42C	NM_153700	NP_714544	Q7RTU9	STRC_HUMAN	stereocilin precursor	1524					sensory perception of sound	cell surface					0		all_cancers(109;3.26e-15)|all_epithelial(112;1.48e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.027)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.56e-07)		TGCTCAGGACGAAATCCCCGG	0.398													7	26					0	0	0.000274275	0	0
ATP8B4	79895	broad.mit.edu	37	15	50152396	50152396	+	Silent	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr15:50152396G>A	uc001zxu.2	-	28	3716	c.3574C>T	c.(3574-3576)CTG>TTG	p.L1192L	ATP8B4_uc010ber.2_Silent_p.L1065L|ATP8B4_uc010ufd.1_Silent_p.L1002L|ATP8B4_uc010ufe.1_RNA|ATP8B4_uc001zxt.2_Silent_p.L195L	NM_024837	NP_079113	Q8TF62	AT8B4_HUMAN	ATPase class I type 8B member 4	1192	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			skin(3)|ovary(2)|breast(2)|large_intestine(1)	8		all_lung(180;0.00183)		all cancers(107;2.41e-07)|GBM - Glioblastoma multiforme(94;8.28e-05)		TTGACTCACAGTTTCACTGTT	0.403													23	115					0	0	0.000878237	0	0
UNC13C	440279	broad.mit.edu	37	15	54305845	54305845	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr15:54305845G>A	uc002ack.2	+	1	745	c.745G>A	c.(745-747)GAA>AAA	p.E249K		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	249					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		GATCTTTAAGGAACTTCAGGG	0.468													14	51					0	0	0.00244969	0	0
UNC13C	440279	broad.mit.edu	37	15	54306429	54306429	+	Silent	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr15:54306429G>A	uc002ack.2	+	1	1329	c.1329G>A	c.(1327-1329)AAG>AAA	p.K443K		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	443					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		AAATCAAGAAGAACAATTGGC	0.418													24	113					0	0	0.00047179	0	0
PRTG	283659	broad.mit.edu	37	15	55930818	55930818	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr15:55930818G>A	uc002adg.2	-	14	2429	c.2381C>T	c.(2380-2382)GCC>GTC	p.A794V		NM_173814	NP_776175	Q2VWP7	PRTG_HUMAN	protogenin precursor	794	Fibronectin type-III 4.				multicellular organismal development	integral to membrane				large_intestine(1)|ovary(1)|skin(1)	3				all cancers(107;0.00891)|GBM - Glioblastoma multiforme(80;0.135)		TAATCGAACGGCAAATTCGTA	0.388													10	55					0	0	0.000442599	0	0
NR2E3	10002	broad.mit.edu	37	15	72105937	72105937	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr15:72105937G>A	uc002ati.2	+	7	1145	c.955G>A	c.(955-957)GAG>AAG	p.E319K	NR2E3_uc002ath.1_Missense_Mutation_p.E319K	NM_014249	NP_055064	Q9Y5X4	NR2E3_HUMAN	photoreceptor-specific nuclear receptor isoform	319					phototransduction|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transcription from RNA polymerase II promoter|visual perception	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|zinc ion binding				0						GACCCCCACGGAGTTTGCCTG	0.607													7	33					0	0	0.00198382	0	0
STRA6	64220	broad.mit.edu	37	15	74473698	74473698	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr15:74473698G>A	uc002axk.2	-	17	1804	c.1622C>T	c.(1621-1623)GCC>GTC	p.A541V	STRA6_uc002axi.2_Missense_Mutation_p.A350V|STRA6_uc010ulh.1_Missense_Mutation_p.A579V|STRA6_uc002axj.2_Missense_Mutation_p.A580V|STRA6_uc010bji.2_Missense_Mutation_p.A541V|STRA6_uc002axl.2_Missense_Mutation_p.A473V|STRA6_uc002axm.2_Missense_Mutation_p.A541V|STRA6_uc002axn.2_Missense_Mutation_p.A532V|STRA6_uc010uli.1_Missense_Mutation_p.A578V	NM_022369	NP_071764	Q9BX79	STRA6_HUMAN	stimulated by retinoic acid gene 6 homolog	541	Cytoplasmic (Potential).				adrenal gland development|alveolar primary septum development|developmental growth|diaphragm development|digestive tract morphogenesis|ear development|embryonic camera-type eye formation|embryonic digestive tract development|eyelid development in camera-type eye|face morphogenesis|feeding behavior|female genitalia development|kidney development|lung vasculature development|neuromuscular process|nose morphogenesis|paramesonephric duct development|positive regulation of behavior|pulmonary artery morphogenesis|pulmonary valve morphogenesis|smooth muscle tissue development|transport|uterus morphogenesis|ventricular septum development|vocal learning	integral to membrane|plasma membrane|protein complex	receptor activity			central_nervous_system(1)	1						AAGGTGGATGGCGTTGTAGAG	0.632													4	27					0	0	0.00024832	0	0
ADAMTSL3	57188	broad.mit.edu	37	15	84651976	84651976	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr15:84651976G>A	uc002bjz.3	+	21	3820	c.3596G>A	c.(3595-3597)GGA>GAA	p.G1199E	ADAMTSL3_uc010bmt.1_Missense_Mutation_p.G1199E|ADAMTSL3_uc010bmu.1_Missense_Mutation_p.G1199E	NM_207517	NP_997400	P82987	ATL3_HUMAN	ADAMTS-like 3 precursor	1199	Ig-like C2-type 2.					proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(6)|central_nervous_system(5)|lung(5)|large_intestine(4)|breast(3)|skin(2)|kidney(1)|pancreas(1)	27			BRCA - Breast invasive adenocarcinoma(143;0.211)			TCCAGGATTGGAAATACAGTA	0.413													20	135					0	0	0.00121646	0	0
ASB7	140460	broad.mit.edu	37	15	101169997	101169997	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr15:101169997C>T	uc002bwk.2	+	5	1336	c.567C>T	c.(565-567)ATC>ATT	p.I189I	ASB7_uc002bwj.2_Silent_p.I189I	NM_198243	NP_937886	Q9H672	ASB7_HUMAN	ankyrin repeat and SOCS box-containing protein 7	189	ANK 6.				intracellular signal transduction					skin(1)	1	Lung NSC(78;0.00121)|all_lung(78;0.00152)|Melanoma(26;0.00852)		OV - Ovarian serous cystadenocarcinoma(32;0.00168)|LUSC - Lung squamous cell carcinoma(107;0.0766)|Lung(145;0.103)			ACGCCGTGATCAAAAGCAATC	0.483													5	32					0	0	0.00116845	0	0
CREBBP	1387	broad.mit.edu	37	16	3823809	3823810	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr16:3823809_3823810GG>AA	uc002cvv.2	-	13	2609_2610	c.2405_2406CC>TT	c.(2404-2406)TCC>TTT	p.S802F	CREBBP_uc002cvw.2_Missense_Mutation_p.S764F	NM_004380	NP_004371	Q92793	CBP_HUMAN	CREB binding protein isoform a	802					cellular lipid metabolic process|homeostatic process|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|protein complex assembly|response to hypoxia	cytoplasm|nuclear body	histone acetyltransferase activity|MyoD binding|p53 binding|sequence-specific DNA binding transcription factor activity|signal transducer activity|transcription coactivator activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(97)|ovary(14)|lung(6)|skin(6)|breast(2)|NS(1)|pancreas(1)	127		Ovarian(90;0.0266)		OV - Ovarian serous cystadenocarcinoma(1;3.54e-05)		TCGCCCCGCTGGATGACGGGAA	0.604			T|N|F|Mis|O	MLL|MORF|RUNXBP2	ALL|AML|DLBCL|B-NHL 		Rubinstein-Taybi syndrome		Rubinstein-Taybi_syndrome				7	57					0	0	6.4e-05	0	0
C16orf89	146556	broad.mit.edu	37	16	5110414	5110414	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr16:5110414C>T	uc010bud.2	-	3	584	c.496G>A	c.(496-498)GGG>AGG	p.G166R	ALG1_uc002cyj.2_Intron|C16orf89_uc002cyk.3_Missense_Mutation_p.G166R	NM_152459	NP_689672	Q6UX73	CP089_HUMAN	hypothetical protein LOC146556 isoform 1	128						extracellular region				ovary(1)|skin(1)	2						TTCCAAAACCCGGGCTGGAGG	0.617													4	34					0	0	0.00024832	0	0
DNAH3	55567	broad.mit.edu	37	16	20975459	20975459	+	Silent	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr16:20975459G>A	uc010vbe.1	-	53	9747	c.9747C>T	c.(9745-9747)TCC>TCT	p.S3249S	DNAH3_uc010vbd.1_Silent_p.S684S	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	3249	AAA 5 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		TGTTACCCTTGGACATGGAGA	0.433													25	133					0	0	0.000586117	0	0
CRYM	1428	broad.mit.edu	37	16	21273358	21273358	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr16:21273358C>T	uc002dik.2	-	6	880	c.795G>A	c.(793-795)GGG>GGA	p.G265G	CRYM_uc010bwq.1_RNA|CRYM_uc002dil.2_Silent_p.G223G|CRYM_uc002dim.2_Silent_p.G265G	NM_001888	NP_001879	Q14894	CRYM_HUMAN	crystallin, mu isoform 1	265					negative regulation of transcription from RNA polymerase II promoter|sensory perception of sound|thyroid hormone transport	cytoplasm|nucleus|plasma membrane	NADP binding|protein homodimerization activity|thyroid hormone binding|transcription corepressor activity				0				GBM - Glioblastoma multiforme(48;0.0573)	Levothyroxine(DB00451)	AGGGCCTCACCCCTGACAGCA	0.572													7	46					0	0	0.00198382	0	0
EEF2K	29904	broad.mit.edu	37	16	22285017	22285017	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr16:22285017C>T	uc002dki.2	+	16	2320	c.1835C>T	c.(1834-1836)TCC>TTC	p.S612F	EEF2K_uc002dkh.2_RNA	NM_013302	NP_037434	O00418	EF2K_HUMAN	elongation factor-2 kinase	612	Pseudosubstrate/autoinhibitory domain (Potential).				insulin receptor signaling pathway|translational elongation	cytosol	ATP binding|calcium ion binding|calmodulin binding|elongation factor-2 kinase activity|translation factor activity, nucleic acid binding			large_intestine(1)	1				GBM - Glioblastoma multiforme(48;0.0223)		GACAGGCAGTCCATGATCCTA	0.527													10	42					0	0	0.000442599	0	0
TNRC6A	27327	broad.mit.edu	37	16	24831512	24831512	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr16:24831512C>T	uc002dmm.2	+	22	5247	c.5133C>T	c.(5131-5133)ACC>ACT	p.T1711T	TNRC6A_uc010bxs.2_Silent_p.T1458T|TNRC6A_uc002dmn.2_Silent_p.T1409T|TNRC6A_uc002dmo.2_Silent_p.T1350T|TNRC6A_uc002dmr.2_5'Flank	NM_014494	NP_055309	Q8NDV7	TNR6A_HUMAN	trinucleotide repeat containing 6A	1711	Sufficient for interaction with EIF2C2.				negative regulation of translation involved in gene silencing by miRNA	cytoplasmic mRNA processing body|micro-ribonucleoprotein complex	nucleotide binding|RNA binding			ovary(2)	2				GBM - Glioblastoma multiforme(48;0.0394)		TTACAAACACCTCTCTGGCTC	0.493													8	100					0	0	0.000673444	0	0
NFATC3	4775	broad.mit.edu	37	16	68224858	68224858	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr16:68224858C>T	uc002evo.1	+	9	2496	c.2286C>T	c.(2284-2286)TCC>TCT	p.S762S	NFATC3_uc010vkl.1_Silent_p.S283S|NFATC3_uc010vkm.1_Silent_p.S283S|NFATC3_uc010vkn.1_Silent_p.S283S|NFATC3_uc010vko.1_Silent_p.S283S|NFATC3_uc010vkp.1_Silent_p.S283S|NFATC3_uc010vkq.1_Silent_p.S283S|NFATC3_uc002evl.2_Silent_p.S283S|NFATC3_uc002evk.2_Silent_p.S762S|NFATC3_uc002evm.1_Silent_p.S762S|NFATC3_uc002evn.1_Silent_p.S762S|NFATC3_uc010vkr.1_Silent_p.S283S|NFATC3_uc010vks.1_Silent_p.S283S|NFATC3_uc010vkt.1_Silent_p.S283S|NFATC3_uc010vku.1_Silent_p.S283S|NFATC3_uc010vkv.1_Silent_p.S283S|NFATC3_uc010vkw.1_Silent_p.S283S|NFATC3_uc010vkx.1_Silent_p.S283S|NFATC3_uc010vky.1_Silent_p.S283S|NFATC3_uc010vkz.1_Silent_p.S283S|NFATC3_uc010vla.1_Silent_p.S283S|NFATC3_uc010vlb.1_Silent_p.S283S|NFATC3_uc010vlc.1_Silent_p.S283S	NM_173165	NP_775188	Q12968	NFAC3_HUMAN	nuclear factor of activated T-cells,	762					inflammatory response|transcription from RNA polymerase II promoter	nucleolus|plasma membrane	DNA binding			upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	3		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0119)|Epithelial(162;0.0452)|all cancers(182;0.24)		TGACCTCATCCCATCTGCCAC	0.448													7	47					0	0	0.00198382	0	0
CHST4	10164	broad.mit.edu	37	16	71570929	71570929	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr16:71570929C>T	uc002fan.2	+	2	530	c.349C>T	c.(349-351)CCC>TCC	p.P117S	CHST4_uc002fao.2_Missense_Mutation_p.P117S	NM_005769	NP_005760	Q8NCG5	CHST4_HUMAN	carbohydrate (N-acetylglucosamine 6-O)	117	Lumenal (Potential).				cell-cell signaling|immune response|inflammatory response|N-acetylglucosamine metabolic process|protein sulfation	integral to membrane|intrinsic to Golgi membrane|trans-Golgi network	N-acetylglucosamine 6-O-sulfotransferase activity				0						GGAACCTGGTCCCCGGAGACA	0.592													13	36					0	0	0.00244969	0	0
CENPN	55839	broad.mit.edu	37	16	81045558	81045558	+	Missense_Mutation	SNP	T	C	C			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr16:81045558T>C	uc002ffx.2	+	2	804	c.14T>C	c.(13-15)GTT>GCT	p.V5A	CENPN_uc002ffw.3_Missense_Mutation_p.V5A|CENPN_uc010vnl.1_Missense_Mutation_p.V5A|CENPN_uc010vnm.1_Missense_Mutation_p.V5A|CENPN_uc002ffy.3_Missense_Mutation_p.V5A	NM_001100624	NP_001094094	Q96H22	CENPN_HUMAN	centromere protein N isoform 2	5					CenH3-containing nucleosome assembly at centromere|mitotic prometaphase	condensed chromosome kinetochore|cytosol|nucleoplasm					0						GATGAGACTGTTGCTGAGTTC	0.368													4	29					0	0	0.00116845	0	0
FAM92B	339145	broad.mit.edu	37	16	85141674	85141674	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr16:85141674G>A	uc010vok.1	-	3	443	c.287C>T	c.(286-288)CCC>CTC	p.P96L		NM_198491	NP_940893	Q6ZTR7	FA92B_HUMAN	hypothetical protein LOC339145	96										central_nervous_system(1)	1						GAGCTTCAGGGGGTTGACCAC	0.642													11	37					0	0	0.000978159	0	0
SERPINF2	5345	broad.mit.edu	37	17	1657539	1657539	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr17:1657539C>T	uc002ftk.1	+	10	1264	c.1187C>T	c.(1186-1188)GCC>GTC	p.A396V	SERPINF2_uc010vqr.1_Missense_Mutation_p.A332V	NM_000934	NP_000925	P08697	A2AP_HUMAN	alpha-2-antiplasmin isoform a precursor	396					acute-phase response|fibrinolysis|platelet activation|platelet degranulation|regulation of proteolysis	extracellular space|platelet alpha granule lumen	protease binding|serine-type endopeptidase inhibitor activity				0				UCEC - Uterine corpus endometrioid carcinoma (25;0.0822)	Streptokinase(DB00086)	GCGGCGGCGGCCACCAGCATT	0.652													15	95					0	0	0.000308642	0	0
OR1E1	8387	broad.mit.edu	37	17	3301630	3301630	+	Silent	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr17:3301630G>A	uc002fvj.1	-	1	75	c.75C>T	c.(73-75)AAC>AAT	p.N25N		NM_003553	NP_003544	P30953	OR1E1_HUMAN	olfactory receptor, family 1, subfamily E,	25	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CATAGCACAGGTTTTGCTGCT	0.517													11	73					0	0	0.00244969	0	0
WSCD1	23302	broad.mit.edu	37	17	6023963	6023963	+	Silent	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr17:6023963G>A	uc010cli.2	+	9	2089	c.1710G>A	c.(1708-1710)AGG>AGA	p.R570R	WSCD1_uc002gcn.2_Silent_p.R570R|WSCD1_uc002gco.2_Silent_p.R570R|WSCD1_uc010clj.2_Silent_p.R261R	NM_015253	NP_056068	Q658N2	WSCD1_HUMAN	WSC domain containing 1	570						integral to membrane	sulfotransferase activity				0						GGCTGCCCAGGGAGTATGTGC	0.652													10	45					0	0	0.000978159	0	0
DNAH2	146754	broad.mit.edu	37	17	7722089	7722089	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr17:7722089C>T	uc002giu.1	+	69	10679	c.10665C>T	c.(10663-10665)ATC>ATT	p.I3555I	DNAH2_uc010cnm.1_Silent_p.I493I	NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	3555	Potential.|AAA 5 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				AGGATGAGATCCTGCGGTGAG	0.632													6	38					0	0	0.00116845	0	0
GLP2R	9340	broad.mit.edu	37	17	9792722	9792722	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr17:9792722C>T	uc002gmd.1	+	13	1362	c.1362C>T	c.(1360-1362)TTC>TTT	p.F454F		NM_004246	NP_004237	O95838	GLP2R_HUMAN	glucagon-like peptide 2 receptor precursor	454	Cytoplasmic (Potential).				G-protein signaling, coupled to cAMP nucleotide second messenger|positive regulation of cell proliferation	integral to membrane|plasma membrane				lung(2)|ovary(1)	3					Glucagon recombinant(DB00040)	GGGTCCGCTTCTTGCTAGCCC	0.532													10	45					0	0	0.000442599	0	0
DNAH9	1770	broad.mit.edu	37	17	11660968	11660968	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr17:11660968C>T	uc002gne.2	+	35	7022	c.6954C>T	c.(6952-6954)TTC>TTT	p.F2318F	DNAH9_uc010coo.2_Silent_p.F1612F	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	2318	AAA 2 (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		CCATTTTGTTCGACAAGTATC	0.473													11	42					0	0	0.00244969	0	0
ZNF287	57336	broad.mit.edu	37	17	16469860	16469860	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr17:16469860C>T	uc002gqi.2	-	3	933	c.480G>A	c.(478-480)TGG>TGA	p.W160*		NM_020653	NP_065704	Q9HBT7	ZN287_HUMAN	zinc finger protein 287	153					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0				UCEC - Uterine corpus endometrioid carcinoma (92;0.083)		AGTCATTTAGCCATCCTGTCT	0.443													18	141					0	0	0.000958276	0	0
MYO15A	51168	broad.mit.edu	37	17	18029750	18029750	+	Silent	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr17:18029750G>A	uc010vxh.1	+	5	4184	c.3846G>A	c.(3844-3846)CGG>CGA	p.R1282R		NM_016239	NP_057323	Q9UKN7	MYO15_HUMAN	myosin XV	1282	Myosin head-like.				sensory perception of sound	cytoplasm|myosin complex|stereocilium	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|pancreas(1)|breast(1)|central_nervous_system(1)	9	all_neural(463;0.228)					ACAACGGACGGGCCCTGGGAG	0.627													5	34					0	0	0.000602214	0	0
Unknown	0	broad.mit.edu	37	17	21731261	21731261	+	Missense_Mutation	SNP	T	C	C			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr17:21731261T>C	uc002gyy.3	+	2	688	c.563T>C	c.(562-564)ATC>ACC	p.I188T						SubName: Full=cDNA FLJ51326, highly similar to Homo sapiens ubiquitin B (UBB), mRNA;																		AAAGAAGGCATCCCCCCGATC	0.537													3	48					0	0	6.4e-05	0	0
Unknown	0	broad.mit.edu	37	17	21731270	21731270	+	Missense_Mutation	SNP	T	C	C			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr17:21731270T>C	uc002gyy.3	+	2	697	c.572T>C	c.(571-573)ATC>ACC	p.I191T						SubName: Full=cDNA FLJ51326, highly similar to Homo sapiens ubiquitin B (UBB), mRNA;																		ATCCCCCCGATCAGCAGAGGC	0.547													3	51					0	0	6.4e-05	0	0
SLC6A4	6532	broad.mit.edu	37	17	28537552	28537552	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr17:28537552G>A	uc002hey.3	-	11	1974	c.1430C>T	c.(1429-1431)TCC>TTC	p.S477F	SLC6A4_uc010csg.2_RNA	NM_001045	NP_001036	P31645	SC6A4_HUMAN	solute carrier family 6 member 4	477	Helical; Name=9; (Potential).				response to toxin|serotonin uptake|thalamus development	cytosol|endomembrane system|endosome membrane|membrane raft	actin filament binding|Rab GTPase binding|serotonin transmembrane transporter activity|serotonin:sodium symporter activity			skin(3)|ovary(1)	4					Amineptine(DB04836)|Amitriptyline(DB00321)|Amoxapine(DB00543)|Citalopram(DB00215)|Clomipramine(DB01242)|Cocaine(DB00907)|Desipramine(DB01151)|Dexfenfluramine(DB01191)|Dextromethorphan(DB00514)|Doxepin(DB01142)|Duloxetine(DB00476)|Escitalopram(DB01175)|Fluoxetine(DB00472)|Fluvoxamine(DB00176)|Imipramine(DB00458)|Methylphenidate(DB00422)|Milnacipran(DB04896)|Minaprine(DB00805)|Nefazodone(DB01149)|Nortriptyline(DB00540)|Paroxetine(DB00715)|Phentermine(DB00191)|Protriptyline(DB00344)|Sertraline(DB01104)|Sibutramine(DB01105)|Tegaserod(DB01079)|Tramadol(DB00193)|Trazodone(DB00656)|Trimipramine(DB00726)|Venlafaxine(DB00285)|Zimelidine(DB04832)	GGTGACCAGGGATCCAAAGAA	0.592													8	47					0	0	0.000157383	0	0
ADAP2	55803	broad.mit.edu	37	17	29276364	29276364	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr17:29276364C>T	uc002hfx.2	+	7	996	c.717C>T	c.(715-717)GCC>GCT	p.A239A	ADAP2_uc010csk.2_Silent_p.A245A|ADAP2_uc002hfy.2_Silent_p.A239A|ADAP2_uc010csl.2_RNA	NM_018404	NP_060874	Q9NPF8	ADAP2_HUMAN	centaurin-alpha 2 protein	239					heart development|regulation of ARF GTPase activity	mitochondrial envelope|plasma membrane	ARF GTPase activator activity|inositol 1,3,4,5 tetrakisphosphate binding|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|phosphatidylinositol-4,5-bisphosphate binding|protein binding, bridging|zinc ion binding	p.?(1)		ovary(1)	1						TAAAAATGGCCTTTCCTGAAC	0.527													5	71					0	0	0.00116845	0	0
Unknown	0	broad.mit.edu	37	17	34236586	34236586	+	RNA	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr17:34236586G>A	uc010ctx.1	-	1		c.368C>T								Homo sapiens cDNA FLJ43944 fis, clone TESTI4014392.																		CAGGTCCAAAGGTTGAAGTGT	0.468													3	9					0	0	6.4e-05	0	0
ACACA	31	broad.mit.edu	37	17	35598957	35598957	+	Silent	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr17:35598957G>A	uc002hnm.2	-	23	3024	c.2833C>T	c.(2833-2835)CTA>TTA	p.L945L	ACACA_uc002hnk.2_Silent_p.L867L|ACACA_uc002hnl.2_Silent_p.L887L|ACACA_uc002hnn.2_Silent_p.L945L|ACACA_uc002hno.2_Silent_p.L982L|ACACA_uc010cuz.2_Silent_p.L945L	NM_198836	NP_942133	Q13085	ACACA_HUMAN	acetyl-Coenzyme A carboxylase alpha isoform 2	945					acetyl-CoA metabolic process|energy reserve metabolic process|fatty acid biosynthetic process|long-chain fatty-acyl-CoA biosynthetic process|positive regulation of cellular metabolic process|protein homotetramerization|triglyceride biosynthetic process	cytosol	acetyl-CoA carboxylase activity|ATP binding|biotin carboxylase activity|metal ion binding|protein binding			large_intestine(1)|ovary(1)	2		Breast(25;0.00157)|Ovarian(249;0.15)			Biotin(DB00121)	TGGCTATCTAGGATGTTTGCA	0.423													6	58					0	0	0.00116845	0	0
DDX52	11056	broad.mit.edu	37	17	35988707	35988707	+	Missense_Mutation	SNP	C	T	T	rs146312035	byFrequency	TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr17:35988707C>T	uc002hoi.1	-	6	795	c.757G>A	c.(757-759)GAG>AAG	p.E253K	DDX52_uc002hoh.1_Missense_Mutation_p.E145K	NM_007010	NP_008941	Q9Y2R4	DDX52_HUMAN	ATP-dependent RNA helicase ROK1 isoform a	253	Helicase ATP-binding.					nucleolus	ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)|skin(1)	2		Breast(25;0.00637)|Ovarian(249;0.15)				TTTATTAACTCTCTGTGAATC	0.313													7	71					0	0	0.000157383	0	0
PNMT	5409	broad.mit.edu	37	17	37826222	37826222	+	Silent	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr17:37826222G>A	uc002hsi.1	+	3	651	c.429G>A	c.(427-429)AAG>AAA	p.K143K		NM_002686	NP_002677	P11086	PNMT_HUMAN	phenylethanolamine N-methyltransferase	143					catecholamine biosynthetic process|hormone biosynthetic process	cytosol	phenylethanolamine N-methyltransferase activity			ovary(1)	1	all_cancers(6;6.59e-85)|all_epithelial(6;2.89e-103)|Breast(7;1.05e-86)|Lung NSC(9;1.15e-09)|all_lung(9;6.24e-09)|Colorectal(19;0.000442)|Esophageal squamous(10;0.052)		UCEC - Uterine corpus endometrioid carcinoma (11;0.000126)|BRCA - Breast invasive adenocarcinoma(8;3.87e-45)|Lung(15;0.00193)|LUAD - Lung adenocarcinoma(14;0.0664)|LUSC - Lung squamous cell carcinoma(15;0.171)			GGCAGGATAAGGAGCGCCAGC	0.657													4	46					0	0	0.000602214	0	0
TMEM99	147184	broad.mit.edu	37	17	38991348	38991348	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr17:38991348C>T	uc002hvj.1	+	3	887	c.580C>T	c.(580-582)CAT>TAT	p.H194Y		NM_145274	NP_660317	Q8N816	TMM99_HUMAN	transmembrane protein 99 precursor	194						integral to membrane				skin(1)	1		Breast(137;0.000301)				TACTAGTTTTCATGACTTCTG	0.368													8	63					0	0	0.000157383	0	0
STAT3	6774	broad.mit.edu	37	17	40467771	40467771	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr17:40467771G>A	uc002hzl.1	-	24	2545	c.2305C>T	c.(2305-2307)CCC>TCC	p.P769S	STAT3_uc002hzk.1_3'UTR|STAT3_uc002hzm.1_Missense_Mutation_p.P768S|STAT3_uc010wgh.1_Missense_Mutation_p.P671S|STAT3_uc002hzn.1_Missense_Mutation_p.P769S|STAT3_uc010cyf.1_3'UTR	NM_139276	NP_644805	P40763	STAT3_HUMAN	signal transducer and activator of transcription	769					cellular component movement|eating behavior|eye photoreceptor cell differentiation|glucose homeostasis|interleukin-6-mediated signaling pathway|interspecies interaction between organisms|JAK-STAT cascade involved in growth hormone signaling pathway|negative regulation of transcription from RNA polymerase II promoter|nerve growth factor receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|protein import into nucleus|response to estradiol stimulus|sexual reproduction|temperature homeostasis	cytosol|nucleus|plasma membrane	calcium ion binding|ligand-regulated transcription factor activity|protein dimerization activity|protein kinase binding|sequence-specific DNA binding transcription factor activity|signal transducer activity|transcription factor binding|transcription regulatory region DNA binding			ovary(1)|lung(1)|breast(1)|central_nervous_system(1)	4		all_cancers(22;1.39e-06)|all_epithelial(22;2.95e-05)|Breast(137;0.000135)		BRCA - Breast invasive adenocarcinoma(366;0.139)		CCTCACATGGGGGAGGTAGCG	0.557									Hyperimmunoglobulin_E_Recurrent_Infection_Syndrome				8	56					0	0	0.000274275	0	0
PNPO	55163	broad.mit.edu	37	17	46022027	46022027	+	Silent	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr17:46022027G>A	uc002imo.2	+	3	462	c.309G>A	c.(307-309)GGG>GGA	p.G103G	PNPO_uc010wkz.1_Silent_p.G103G|PNPO_uc010wla.1_Silent_p.G8G|PNPO_uc010wlb.1_Silent_p.G103G	NM_018129	NP_060599	Q9NVS9	PNPO_HUMAN	pyridoxine 5'-phosphate oxidase	103					pyridoxine biosynthetic process	cytosol	FMN binding|pyridoxamine-phosphate oxidase activity				0					Pyridoxal Phosphate(DB00114)	AGGGCTTCGGGAAAGATGGCT	0.502													28	157					0	0	0.001512	0	0
MIR1203	100302211	broad.mit.edu	37	17	46233855	46233855	+	RNA	SNP	A	G	G			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr17:46233855A>G	hsa-mir-1203|MI0006335	-			c.19A>G			SKAP1_uc002ini.1_Intron|SKAP1_uc002inj.1_Intron|SKAP1_uc010dbd.1_Intron|SKAP1_uc010dbe.1_Intron																	0						CTTGAGCTGCATCCTGGCTCC	0.537													6	42					0	0	0.00116845	0	0
AKAP1	8165	broad.mit.edu	37	17	55193620	55193620	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr17:55193620C>T	uc002iux.2	+	7	2661	c.2430C>T	c.(2428-2430)ATC>ATT	p.I810I	AKAP1_uc010wnl.1_Silent_p.I810I|AKAP1_uc010dcm.2_Silent_p.I810I	NM_003488	NP_003479	Q92667	AKAP1_HUMAN	A-kinase anchor protein 1 precursor	810	Tudor.				blood coagulation	cytosol|integral to membrane|mitochondrial outer membrane	protein binding|RNA binding			ovary(1)	1	Breast(9;5.46e-08)					TCCGGCAAATCAGGTGAGCGG	0.582													10	59					0	0	0.000673444	0	0
PPM1E	22843	broad.mit.edu	37	17	57043082	57043082	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr17:57043082C>T	uc002iwx.2	+	3	738	c.611C>T	c.(610-612)TCT>TTT	p.S204F	PPM1E_uc010ddd.2_Intron	NM_014906	NP_055721	Q8WY54	PPM1E_HUMAN	protein phosphatase 1E	213					protein dephosphorylation	cytoplasm|nucleolus|protein serine/threonine phosphatase complex	metal ion binding|protein serine/threonine phosphatase activity			breast(3)|lung(1)|skin(1)	5	Medulloblastoma(34;0.127)|all_neural(34;0.237)		BRCA - Breast invasive adenocarcinoma(1;5.76e-11)			TTGGCCCGTTCTGTCTTCAGC	0.463													39	218					0	0	0.00222228	0	0
NACA2	342538	broad.mit.edu	37	17	59668329	59668330	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr17:59668329_59668330CC>TT	uc002izj.2	-	1	238_239	c.212_213GG>AA	c.(211-213)CGG>CAA	p.R71Q		NM_199290	NP_954984	Q9H009	NACA2_HUMAN	nascent-polypeptide-associated complex alpha	71	NAC-A/B.				protein transport	cytoplasm|nucleus				ovary(1)	1	all_epithelial(1;3.12e-14)					TCTTTTCACTCCGACTCTGTTT	0.46													24	171					0	0	6.4e-05	0	0
MED13	9969	broad.mit.edu	37	17	60060354	60060354	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr17:60060354G>A	uc002izo.2	-	16	3087	c.3010C>T	c.(3010-3012)CCA>TCA	p.P1004S		NM_005121	NP_005112	Q9UHV7	MED13_HUMAN	mediator complex subunit 13	1004					androgen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ligand-dependent nuclear receptor transcription coactivator activity|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			large_intestine(1)|ovary(1)	2						GGGGTGGATGGAGAAGGAAGA	0.507													6	37					0	0	0.000157383	0	0
EFCAB3	146779	broad.mit.edu	37	17	60472490	60472490	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr17:60472490C>T	uc002izu.1	+	6	507	c.429C>T	c.(427-429)ATC>ATT	p.I143I	EFCAB3_uc010wpc.1_Silent_p.I195I	NM_173503	NP_775774	Q8N7B9	EFCB3_HUMAN	EF-hand calcium binding domain 3 isoform b	143							calcium ion binding			skin(1)	1			BRCA - Breast invasive adenocarcinoma(2;2.27e-11)			TGTTTGAAATCCTATCAAGGC	0.388													21	119					0	0	0.000720815	0	0
ABCA9	10350	broad.mit.edu	37	17	66981228	66981228	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr17:66981228G>A	uc002jhu.2	-	33	4393	c.4250C>T	c.(4249-4251)CCC>CTC	p.P1417L	ABCA9_uc010dez.2_Missense_Mutation_p.P1379L	NM_080283	NP_525022	Q8IUA7	ABCA9_HUMAN	ATP-binding cassette, sub-family A, member 9	1417	ABC transporter 2.				transport	integral to membrane	ATP binding|ATPase activity			ovary(4)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6	Breast(10;1.47e-12)					GGTCTTCACGGGAGCCTTCAG	0.527													5	62					0	0	0.000602214	0	0
ITGB4	3691	broad.mit.edu	37	17	73748645	73748645	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr17:73748645C>T	uc002jpg.2	+	32	4282	c.4095C>T	c.(4093-4095)GTC>GTT	p.V1365V	ITGB4_uc002jph.2_Silent_p.V1365V|ITGB4_uc002jpi.3_Silent_p.V1365V|ITGB4_uc002jpj.2_Silent_p.V1365V|GALK1_uc010wsi.1_Intron	NM_000213	NP_000204	P16144	ITB4_HUMAN	integrin beta 4 isoform 1 precursor	1365	Cytoplasmic (Potential).				cell communication|cell motility|cell-matrix adhesion|hemidesmosome assembly|integrin-mediated signaling pathway|multicellular organismal development|response to wounding	cell leading edge|cell surface|hemidesmosome|integrin complex	protein binding|receptor activity			lung(4)	4	all_cancers(13;1.5e-07)		all cancers(21;8.32e-07)|Epithelial(20;1.92e-06)|BRCA - Breast invasive adenocarcinoma(9;0.00194)|Lung(188;0.132)|LUSC - Lung squamous cell carcinoma(166;0.154)			GGCCCAGCGTCTCCGATGACA	0.612													5	56					0	0	0.00116845	0	0
PPP4R1	9989	broad.mit.edu	37	18	9557295	9557296	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr18:9557295_9557296GG>AA	uc002koe.1	-	15	2231_2232	c.2113_2114CC>TT	c.(2113-2115)CCA>TTA	p.P705L	PPP4R1_uc002kof.2_Missense_Mutation_p.P122L|PPP4R1_uc010wzo.1_Missense_Mutation_p.P551L|PPP4R1_uc002kod.1_Missense_Mutation_p.P688L	NM_001042388	NP_001035847	Q8TF05	PP4R1_HUMAN	protein phosphatase 4, regulatory subunit 1	705	HEAT 12.				protein phosphorylation|signal transduction	protein phosphatase 4 complex	protein binding|protein phosphatase type 4 regulator activity			skin(1)	1						ATTAAAAATTGGAACCAGATCT	0.366													28	226					0	0	6.4e-05	0	0
FHOD3	80206	broad.mit.edu	37	18	33952695	33952695	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr18:33952695C>T	uc002kzt.1	+	3	422	c.325C>T	c.(325-327)CAT>TAT	p.H109Y	FHOD3_uc002kzr.1_Missense_Mutation_p.H109Y|FHOD3_uc002kzs.1_Missense_Mutation_p.H109Y	NM_025135	NP_079411	Q2V2M9	FHOD3_HUMAN	formin homology 2 domain containing 3	109	GBD/FH3.				actin cytoskeleton organization	cytoplasm|cytoskeleton	actin binding			skin(3)|large_intestine(2)|breast(2)|ovary(1)	8		all_epithelial(2;0.0181)|Colorectal(2;0.0195)				TGTGAGGGTCCATGCCTGCAT	0.498													4	16					0	0	0.00116845	0	0
C18orf25	147339	broad.mit.edu	37	18	43843018	43843018	+	Silent	SNP	T	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr18:43843018T>A	uc002lbw.2	+	6	1531	c.1152T>A	c.(1150-1152)GCT>GCA	p.A384A	C18orf25_uc002lbx.2_Silent_p.A323A	NM_145055	NP_659492	Q96B23	CR025_HUMAN	ARKadia-like 1 isoform a	383										central_nervous_system(2)	2						AGACTTGGGCTTCACCAGCAG	0.493													5	36					0	0	0.000602214	0	0
ZBTB7C	201501	broad.mit.edu	37	18	45566864	45566864	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr18:45566864C>T	uc002lda.2	-	1	631	c.615G>A	c.(613-615)AGG>AGA	p.R205R	ZBTB7C_uc002ldb.2_Silent_p.R205R|ZBTB7C_uc010dnu.2_Silent_p.R214R|ZBTB7C_uc010dnv.2_Silent_p.R227R|ZBTB7C_uc010dnw.2_Silent_p.R205R|ZBTB7C_uc010dnx.1_Silent_p.R205R|ZBTB7C_uc010dny.1_Silent_p.R205R|ZBTB7C_uc010dnz.1_Silent_p.R227R|ZBTB7C_uc010dob.1_Silent_p.R205R|ZBTB7C_uc010doc.1_Silent_p.R214R|ZBTB7C_uc010dod.1_Silent_p.R227R|ZBTB7C_uc010doe.1_Silent_p.R205R|ZBTB7C_uc010dof.1_Silent_p.R205R|ZBTB7C_uc010dog.1_Silent_p.R205R|ZBTB7C_uc010doh.1_Silent_p.R214R|ZBTB7C_uc010doi.1_Silent_p.R205R|ZBTB7C_uc010doj.1_Silent_p.R214R|ZBTB7C_uc010dok.1_Silent_p.R254R|ZBTB7C_uc010dol.1_Silent_p.R214R|ZBTB7C_uc010doa.1_Silent_p.R227R|ZBTB7C_uc010don.1_Silent_p.R213R|ZBTB7C_uc010doo.1_Silent_p.R205R|ZBTB7C_uc010dop.1_Silent_p.R205R|ZBTB7C_uc010doq.1_Silent_p.R214R|ZBTB7C_uc010dor.1_Silent_p.R227R|ZBTB7C_uc010dos.1_Silent_p.R205R|ZBTB7C_uc010dot.1_Silent_p.R205R|ZBTB7C_uc010dou.1_Silent_p.R214R|ZBTB7C_uc010dom.1_Silent_p.R214R	NM_001039360	NP_001034449	A1YPR0	ZBT7C_HUMAN	zinc finger and BTB domain containing 7C	205						intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1						CAGGGAAGTCCCTGGGGGTGT	0.572													12	66					0	0	0.00185496	0	0
TXNL1	9352	broad.mit.edu	37	18	54293650	54293650	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr18:54293650G>A	uc002lgg.2	-	2	386	c.137C>T	c.(136-138)TCT>TTT	p.S46F	TXNL1_uc010xdz.1_RNA|TXNL1_uc002lgh.2_RNA|TXNL1_uc002lgi.2_Missense_Mutation_p.S46F|TXNL1_uc002lgj.1_Missense_Mutation_p.S46F	NM_004786	NP_004777	O43396	TXNL1_HUMAN	thioredoxin-like 1	46	Thioredoxin.				cell redox homeostasis|electron transport chain|glycerol ether metabolic process|transport	cytoplasm	electron carrier activity|protein disulfide oxidoreductase activity				0				READ - Rectum adenocarcinoma(59;0.193)|Colorectal(16;0.211)		ATTACTCATAGAACTGAATGC	0.348													20	135					0	0	0.00047179	0	0
ALPK2	115701	broad.mit.edu	37	18	56184319	56184319	+	Missense_Mutation	SNP	C	T	T	rs151328897		TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr18:56184319C>T	uc002lhj.3	-	9	5975	c.5761G>A	c.(5761-5763)GAG>AAG	p.E1921K		NM_052947	NP_443179	Q86TB3	ALPK2_HUMAN	heart alpha-kinase	1921	Alpha-type protein kinase.						ATP binding|protein serine/threonine kinase activity			ovary(7)|skin(5)|lung(1)|central_nervous_system(1)	14						TGCAGCTCCTCCGTGGCGATC	0.547													6	60					0	0	0.00116845	0	0
ZNF532	55205	broad.mit.edu	37	18	56586307	56586307	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr18:56586307C>T	uc002lho.2	+	4	1335	c.788C>T	c.(787-789)TCG>TTG	p.S263L	ZNF532_uc002lhp.2_Missense_Mutation_p.S261L|ZNF532_uc010xeg.1_Missense_Mutation_p.S261L|ZNF532_uc002lhr.2_Missense_Mutation_p.S261L|ZNF532_uc002lhs.2_Missense_Mutation_p.S261L	NM_018181	NP_060651	Q9HCE3	ZN532_HUMAN	zinc finger protein 532	263					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)|skin(1)	2						AAGACAAAGTCGTCCTCCAAG	0.557													8	44					0	0	0.000274275	0	0
SERPINB7	8710	broad.mit.edu	37	18	61471612	61471612	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr18:61471612C>T	uc002ljl.2	+	8	982	c.886C>T	c.(886-888)CTG>TTG	p.L296L	SERPINB7_uc002ljm.2_Silent_p.L296L|SERPINB7_uc010xet.1_Silent_p.L279L|SERPINB7_uc010dqg.2_Silent_p.L296L	NM_001040147	NP_001035237	O75635	SPB7_HUMAN	serine (or cysteine) proteinase inhibitor, clade	296					regulation of proteolysis	cytoplasm	serine-type endopeptidase inhibitor activity			lung(2)|central_nervous_system(1)	3		Esophageal squamous(42;0.129)				AGCCCTAGGGCTGAAAGATAT	0.393													6	51					0	0	0.00198382	0	0
SALL3	27164	broad.mit.edu	37	18	76752127	76752127	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr18:76752127G>A	uc002lmt.2	+	2	136	c.136G>A	c.(136-138)GGG>AGG	p.G46R	SALL3_uc010dra.2_5'Flank	NM_171999	NP_741996	Q9BXA9	SALL3_HUMAN	sal-like 3	46					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|large_intestine(1)|central_nervous_system(1)	4		Esophageal squamous(42;0.129)|Melanoma(33;0.16)|Prostate(75;0.167)		OV - Ovarian serous cystadenocarcinoma(15;4.69e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0256)		GAGCCGCAGCGGGGGCGAGGA	0.706													4	13					0	0	0.00024832	0	0
MUC16	94025	broad.mit.edu	37	19	9064628	9064628	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr19:9064628C>T	uc002mkp.2	-	3	23022	c.22818G>A	c.(22816-22818)AGG>AGA	p.R7606R		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7608	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGGCAGAAATCCTGGGGATGG	0.478													10	41					0	0	0.000673444	0	0
MUC16	94025	broad.mit.edu	37	19	9083281	9083281	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr19:9083281G>A	uc002mkp.2	-	1	8738	c.8534C>T	c.(8533-8535)CCC>CTC	p.P2845L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	2845	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TATCCCTTTGGGTGCTGTTGA	0.507													4	18					0	0	0.00024832	0	0
MUC16	94025	broad.mit.edu	37	19	9088334	9088334	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr19:9088334G>A	uc002mkp.2	-	1	3685	c.3481C>T	c.(3481-3483)CCT>TCT	p.P1161S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	1161	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TTGGGAGTAGGAGAAGAAGGA	0.488													12	68					0	0	0.00244969	0	0
LOC284441	284441	broad.mit.edu	37	19	20369288	20369288	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr19:20369288G>A	uc002nov.2	+	1	832	c.81G>A	c.(79-81)TGG>TGA	p.W27*		NR_003128				SubName: Full=cDNA FLJ51655, highly similar to Actin-like protein 2;												0						TACGAAATTGGGATGACACGA	0.373													18	91					0	0	0.000958276	0	0
ZNF536	9745	broad.mit.edu	37	19	31039066	31039066	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr19:31039066G>A	uc002nsu.1	+	4	2678	c.2540G>A	c.(2539-2541)GGA>GAA	p.G847E	ZNF536_uc010edd.1_Missense_Mutation_p.G847E	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	847					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					GGTCTCCCTGGAATCGACTTC	0.577													5	68					0	0	0.00116845	0	0
TYROBP	7305	broad.mit.edu	37	19	36395500	36395500	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr19:36395500G>A	uc002ocm.2	-	5	369	c.313C>T	c.(313-315)CTC>TTC	p.L105F	TYROBP_uc002ocn.2_Missense_Mutation_p.L104F	NM_003332	NP_003323	O43914	TYOBP_HUMAN	TYRO protein tyrosine kinase binding protein	105	Cytoplasmic (Potential).				axon guidance|cell junction assembly|cellular defense response|intracellular signal transduction|regulation of immune response	integral to plasma membrane|intracellular	identical protein binding|receptor signaling protein activity				0	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			TGTGTGTTGAGGTCGCTGTAG	0.532													5	27					0	0	0.00198382	0	0
ZNF382	84911	broad.mit.edu	37	19	37101568	37101568	+	Silent	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr19:37101568G>A	uc002oek.2	+	4	269	c.156G>A	c.(154-156)AAG>AAA	p.K52K	ZNF382_uc010efa.2_Silent_p.K3K|ZNF382_uc010efb.2_Silent_p.K51K|ZNF382_uc002oel.2_Silent_p.K52K	NM_032825	NP_116214	Q96SR6	ZN382_HUMAN	zinc finger protein 382	52	Mediates interaction with TRIM28 (By similarity).|KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Esophageal squamous(110;0.198)		COAD - Colon adenocarcinoma(19;0.0454)|Colorectal(19;0.065)			ACATGGCTAAGCCTGATATGA	0.378													10	80					0	0	0.00136819	0	0
ZNF585B	92285	broad.mit.edu	37	19	37677377	37677377	+	Silent	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr19:37677377G>A	uc002ofq.2	-	5	1316	c.1062C>T	c.(1060-1062)TCC>TCT	p.S354S	uc002ofp.1_5'Flank|ZNF585B_uc002ofr.1_Silent_p.S168S	NM_152279	NP_689492	Q52M93	Z585B_HUMAN	zinc finger protein 585B	354	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			ovary(1)	1			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			CAGTACATATGGAAGATTTCT	0.403													12	105					0	0	0.00136819	0	0
CATSPERG	57828	broad.mit.edu	37	19	38858697	38858697	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr19:38858697C>T	uc002oih.3	+	26	3027	c.2940C>T	c.(2938-2940)AGC>AGT	p.S980S	CATSPERG_uc002oig.3_Silent_p.S940S|CATSPERG_uc002oif.3_Silent_p.S620S|CATSPERG_uc010efw.2_RNA	NM_021185	NP_067008	Q6ZRH7	CTSRG_HUMAN	cation channel, sperm-associated, gamma	980	Extracellular (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				ovary(1)|skin(1)	2						GGACCAACAGCCTTATCTGGA	0.612													5	71					0	0	0.00116845	0	0
CYP2B7P1	1556	broad.mit.edu	37	19	41430298	41430298	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr19:41430298G>A	uc010ehg.1	+	1	129	c.121G>A	c.(121-123)GGG>AGG	p.G41R	CYP2A7_uc002opo.2_Intron|CYP2B7P1_uc010ehh.1_Missense_Mutation_p.G41R|CYP2B7P1_uc002opq.2_RNA					SubName: Full=Cytochrome P450 2B7 short isoform; SubName: Full=CYP2B protein;											ovary(1)|skin(1)	2						GCCCCTTTTGGGGAACCTTCT	0.577													8	60					0	0	0.000274275	0	0
CEACAM5	1048	broad.mit.edu	37	19	42231208	42231208	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr19:42231208G>A	uc002ork.2	+	9	2202	c.2081G>A	c.(2080-2082)GGA>GAA	p.G694E	CEACAM5_uc002orj.1_Missense_Mutation_p.G693E|CEACAM5_uc002orl.2_Missense_Mutation_p.G694E	NM_004363	NP_004354	P06731	CEAM5_HUMAN	carcinoembryonic antigen-related cell adhesion	694						anchored to membrane|basolateral plasma membrane|integral to plasma membrane				skin(2)	2				OV - Ovarian serous cystadenocarcinoma(3;0.00278)|all cancers(3;0.00625)|Epithelial(262;0.0379)|GBM - Glioblastoma multiforme(1328;0.142)		ATCATGATTGGAGTGCTGGTT	0.478													45	308					0	0	0.000781405	0	0
GRIK5	2901	broad.mit.edu	37	19	42546759	42546759	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr19:42546759C>T	uc002osj.1	-	11	1453	c.1418G>A	c.(1417-1419)GGG>GAG	p.G473E	GRIK5_uc002osi.1_Missense_Mutation_p.G45E|GRIK5_uc010eib.1_Missense_Mutation_p.G392E	NM_002088	NP_002079	Q16478	GRIK5_HUMAN	glutamate receptor KA2 precursor	473	Extracellular (Potential).					cell junction|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity				0		Prostate(69;0.059)			L-Glutamic Acid(DB00142)	CTCGGGCGCCCCGTACAGCCC	0.672													4	50					0	0	0.00116845	0	0
GRIK5	2901	broad.mit.edu	37	19	42558499	42558499	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr19:42558499C>T	uc002osj.1	-	8	1064	c.1029G>A	c.(1027-1029)GGG>GGA	p.G343G	GRIK5_uc010eib.1_Silent_p.G262G	NM_002088	NP_002079	Q16478	GRIK5_HUMAN	glutamate receptor KA2 precursor	343	Extracellular (Potential).					cell junction|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity				0		Prostate(69;0.059)			L-Glutamic Acid(DB00142)	TGAGGCTGGTCCCGTGGGGCC	0.652													10	55					0	0	0.000673444	0	0
PSG3	5671	broad.mit.edu	37	19	43233378	43233378	+	Silent	SNP	A	G	G			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr19:43233378A>G	uc002oue.2	-	5	1272	c.1140T>C	c.(1138-1140)TTT>TTC	p.F380F	PSG3_uc002ouf.2_Intron|PSG1_uc002oug.1_Silent_p.F380F|PSG3_uc010eil.2_Silent_p.F402F	NM_021016	NP_066296	Q16557	PSG3_HUMAN	pregnancy specific beta-1-glycoprotein 3	380	Ig-like C2-type 3.			Missing (in Ref. 9).	defense response|female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00682)				TCTGGGGGATAAAGAGCTTTT	0.458													20	180					0	0	0.00188189	0	0
CD177	57126	broad.mit.edu	37	19	43858513	43858513	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr19:43858513C>T	uc002owi.2	+	3	390	c.348C>T	c.(346-348)TCC>TCT	p.S116S	CD177_uc010eis.2_RNA|CD177_uc002owj.2_RNA	NM_020406	NP_065139	Q8N6Q3	CD177_HUMAN	CD177 molecule precursor	116					blood coagulation|leukocyte migration	anchored to membrane|plasma membrane				central_nervous_system(1)	1		Prostate(69;0.00682)				TCGTTAACTCCCTCCCGCTTT	0.672													5	54					0	0	0.00116845	0	0
ZNF229	7772	broad.mit.edu	37	19	44934623	44934623	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr19:44934623C>T	uc002oze.1	-	6	767	c.333G>A	c.(331-333)GAG>GAA	p.E111E	ZNF229_uc010ejk.1_5'UTR|ZNF229_uc010ejl.1_Silent_p.E105E	NM_014518	NP_055333	Q9UJW7	ZN229_HUMAN	zinc finger protein 229	111					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|pancreas(1)	4		Prostate(69;0.0352)				CACCTGCCACCTCTTCCCAGA	0.443													7	48					0	0	0.00198382	0	0
BCAM	4059	broad.mit.edu	37	19	45315759	45315759	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr19:45315759C>T	uc002ozu.2	+	4	502	c.458C>T	c.(457-459)TCC>TTC	p.S153F	BCAM_uc002ozt.1_Missense_Mutation_p.S153F	NM_005581	NP_005572	P50895	BCAM_HUMAN	basal cell adhesion molecule isoform 1	153	Extracellular (Potential).|Ig-like V-type 2.				cell-matrix adhesion	integral to plasma membrane	laminin binding|laminin receptor activity			skin(1)	1	Lung NSC(12;0.000789)|all_lung(12;0.00218)	Ovarian(192;0.0728)|all_neural(266;0.112)				ACTGAGGTCTCCCCCAACAAA	0.502													28	187					0	0	0.001512	0	0
RSPH6A	81492	broad.mit.edu	37	19	46307945	46307945	+	Silent	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr19:46307945G>A	uc002pdm.2	-	3	1361	c.1218C>T	c.(1216-1218)TCC>TCT	p.S406S	RSPH6A_uc002pdl.2_Silent_p.S142S	NM_030785	NP_110412	Q9H0K4	RSH6A_HUMAN	radial spokehead-like 1	406						intracellular				ovary(1)|central_nervous_system(1)	2						GCTTCCATACGGACTTAGGGA	0.453													5	33					0	0	0.00116845	0	0
CRX	1406	broad.mit.edu	37	19	48339542	48339542	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr19:48339542G>A	uc002phq.3	+	3	347	c.143G>A	c.(142-144)CGG>CAG	p.R48Q	CRX_uc010elm.1_RNA	NM_000554	NP_000545	O43186	CRX_HUMAN	cone-rod homeobox protein	48	Homeobox.				organ morphogenesis|response to stimulus|visual perception		leucine zipper domain binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			breast(1)|central_nervous_system(1)	2		all_cancers(25;2.76e-09)|all_epithelial(76;7.01e-07)|all_lung(116;2.48e-06)|Lung NSC(112;5.15e-06)|Ovarian(192;0.0139)|all_neural(266;0.0146)|Breast(70;0.133)		OV - Ovarian serous cystadenocarcinoma(262;0.000266)|all cancers(93;0.000788)|Epithelial(262;0.0226)|GBM - Glioblastoma multiforme(486;0.0521)		ACCTTCACCCGGAGCCAACTG	0.637													10	35					0	0	0.000442599	0	0
FPR1	2357	broad.mit.edu	37	19	52249706	52249706	+	Missense_Mutation	SNP	G	A	A	rs146075164		TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr19:52249706G>A	uc002pxq.2	-	2	637	c.542C>T	c.(541-543)TCG>TTG	p.S181L		NM_002029	NP_002020	P21462	FPR1_HUMAN	formyl peptide receptor 1	181	Extracellular (Potential).				activation of MAPK activity|cellular component movement|chemotaxis|G-protein signaling, coupled to cAMP nucleotide second messenger|nitric oxide mediated signal transduction	endosome|integral to membrane|plasma membrane	N-formyl peptide receptor activity			ovary(1)|lung(1)|skin(1)	3		all_neural(266;0.0189)|Medulloblastoma(540;0.146)		GBM - Glioblastoma multiforme(134;0.00106)|OV - Ovarian serous cystadenocarcinoma(262;0.018)	Nedocromil(DB00716)	GGTCCAGGGCGAAAAGTTAAA	0.527													12	67					0	0	0.00136819	0	0
ZNF331	55422	broad.mit.edu	37	19	54080048	54080048	+	Silent	SNP	C	T	T	rs141196058		TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr19:54080048C>T	uc002qbx.1	+	7	1668	c.234C>T	c.(232-234)TCC>TCT	p.S78S	ZNF331_uc002qby.1_Silent_p.S78S|ZNF331_uc002qbz.1_Silent_p.S78S|ZNF331_uc002qca.1_Silent_p.S78S|ZNF331_uc010eqr.1_Silent_p.S78S|ZNF331_uc002qcb.1_Silent_p.S78S|ZNF331_uc002qcc.1_Silent_p.S78S|ZNF331_uc002qcd.1_Silent_p.S78S	NM_018555	NP_061025	Q9NQX6	ZN331_HUMAN	zinc finger protein 331	78	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding	p.S78S(1)		skin(3)|upper_aerodigestive_tract(1)|ovary(1)|lung(1)	6				GBM - Glioblastoma multiforme(134;0.00555)		GAAGTAAATCCCTTGGCCGTA	0.393			T	?	follicular thyroid adenoma								7	75					0	0	0.00198382	0	0
LILRA3	11026	broad.mit.edu	37	19	54802724	54802724	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr19:54802724C>T	uc002qfd.2	-	5	782	c.717G>A	c.(715-717)GGG>GGA	p.G239G	LILRA6_uc002qew.1_Intron|LILRA3_uc010erk.2_Silent_p.G175G	NM_006865	NP_006856	Q8N6C8	LIRA3_HUMAN	leukocyte immunoglobulin-like receptor,	239	Ig-like C2-type 3.				defense response	extracellular region|plasma membrane	antigen binding|receptor activity			ovary(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		TCAGCTTCTCCCCAGGGGCCA	0.597													5	28					0	0	0.00198382	0	0
LILRB4	11006	broad.mit.edu	37	19	55175697	55175697	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr19:55175697G>A	uc002qgp.2	+	4	778	c.416G>A	c.(415-417)AGC>AAC	p.S139N	LILRB4_uc002qgq.2_Missense_Mutation_p.S139N|LILRB4_uc010ers.1_Missense_Mutation_p.S52N|LILRB4_uc002qgr.2_Missense_Mutation_p.S180N|LILRB4_uc010ert.2_Missense_Mutation_p.S180N|LILRB4_uc010eru.2_Missense_Mutation_p.S168N	NM_006847	NP_006838	Q8NHJ6	LIRB4_HUMAN	leukocyte immunoglobulin-like receptor,	139	Ig-like C2-type 2.|Extracellular (Potential).					integral to membrane|plasma membrane	antigen binding|receptor activity			ovary(3)	3				GBM - Glioblastoma multiforme(193;0.035)		TCAGGAAAGAGCGTGACCCTG	0.572													16	54					0	0	0.000308642	0	0
NLRP13	126204	broad.mit.edu	37	19	56410191	56410191	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr19:56410191C>T	uc010ygg.1	-	10	2927	c.2902G>A	c.(2902-2904)GGA>AGA	p.G968R		NM_176810	NP_789780	Q86W25	NAL13_HUMAN	NACHT, leucine rich repeat and PYD containing	968	LRR 6.						ATP binding			skin(4)|ovary(3)|pancreas(1)|lung(1)	9		Colorectal(82;3.48e-05)|Ovarian(87;0.0481)|Renal(1328;0.218)		GBM - Glioblastoma multiforme(193;0.0642)		AGCTTCACTCCATCATCCTGA	0.458													9	77					0	0	0.000442599	0	0
ZNF667	63934	broad.mit.edu	37	19	56952847	56952847	+	Missense_Mutation	SNP	T	C	C			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr19:56952847T>C	uc002qnd.2	-	5	1679	c.1517A>G	c.(1516-1518)AAG>AGG	p.K506R	ZNF667_uc010etl.2_Missense_Mutation_p.K288R|ZNF667_uc002qne.2_Missense_Mutation_p.K506R|ZNF667_uc010etm.2_Missense_Mutation_p.K449R	NM_022103	NP_071386	Q5HYK9	ZN667_HUMAN	zinc finger protein 667	506	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)	1		Colorectal(82;0.000256)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0615)		GCTGAAGGCCTTCCCACACTG	0.463													3	39					0	0	0.00024832	0	0
ZIM3	114026	broad.mit.edu	37	19	57646475	57646475	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr19:57646475C>T	uc002qnz.1	-	5	1616	c.1230G>A	c.(1228-1230)CAG>CAA	p.Q410Q		NM_052882	NP_443114	Q96PE6	ZIM3_HUMAN	zinc finger, imprinted 3	410	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)|skin(1)	2		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.243)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		TATGAGTTTTCTGATGGCTAT	0.383													15	155					0	0	0.000566183	0	0
MZF1	7593	broad.mit.edu	37	19	59073677	59073677	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr19:59073677G>A	uc002qto.2	-	6	2528	c.1967C>T	c.(1966-1968)CCC>CTC	p.P656L	LOC100131691_uc002qtm.2_Intron|MZF1_uc002qtn.2_Missense_Mutation_p.P656L	NM_198055	NP_932172	P28698	MZF1_HUMAN	zinc finger protein 42 isoform 2	656	C2H2-type 11.				viral reproduction	nucleus	protein homodimerization activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(1)	1		all_cancers(17;4.4e-22)|all_epithelial(17;2.15e-16)|Lung NSC(17;1.24e-06)|all_lung(17;5.41e-06)|Colorectal(82;3.46e-05)|Renal(17;0.00179)|all_neural(62;0.00607)|Ovarian(87;0.0443)|Breast(46;0.0928)|Medulloblastoma(540;0.184)		UCEC - Uterine corpus endometrioid carcinoma (67;0.0443)|all cancers(4;7.92e-14)|Epithelial(4;5.57e-11)|OV - Ovarian serous cystadenocarcinoma(4;1.13e-09)|GBM - Glioblastoma multiforme(193;0.0108)|Lung(386;0.182)		GCCGCACTCGGGGCAGGCGAA	0.692													3	7					0	0	6.4e-05	0	0
NCOA1	8648	broad.mit.edu	37	2	24991212	24991212	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr2:24991212C>T	uc002rfk.2	+	21	4536	c.4278C>T	c.(4276-4278)ACC>ACT	p.T1426T	NCOA1_uc010eye.2_3'UTR|NCOA1_uc002rfi.2_3'UTR|NCOA1_uc002rfj.2_3'UTR|NCOA1_uc002rfl.2_Silent_p.T1425T|NCOA1_uc010eyf.2_3'UTR	NM_003743	NP_003734	Q15788	NCOA1_HUMAN	nuclear receptor coactivator 1 isoform 1	1426									PAX3/NCOA1(8)	soft_tissue(8)|ovary(1)|lung(1)|skin(1)	11	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GACCACAGACCCCCCAGGCCC	0.488			T	PAX3	alveolar rhadomyosarcoma								7	43					0	0	0.000274275	0	0
C2orf16	84226	broad.mit.edu	37	2	27800558	27800558	+	Silent	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr2:27800558G>A	uc002rkz.3	+	1	1170	c.1119G>A	c.(1117-1119)GAG>GAA	p.E373E		NM_032266	NP_115642	Q68DN1	CB016_HUMAN	hypothetical protein LOC84226	373										large_intestine(1)	1	Acute lymphoblastic leukemia(172;0.155)					TGCAGGTAGAGAAAACTTTGC	0.463													8	43					0	0	0.000274275	0	0
TTC7A	57217	broad.mit.edu	37	2	47287978	47287978	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr2:47287978C>T	uc002rvo.2	+	19	2591	c.2223C>T	c.(2221-2223)TTC>TTT	p.F741F	TTC7A_uc002rvm.2_Silent_p.F707F|TTC7A_uc010fbb.2_Silent_p.F765F|TTC7A_uc010fbc.2_Silent_p.F387F|TTC7A_uc002rvp.2_Silent_p.F622F|TTC7A_uc002rvq.2_Silent_p.F481F|TTC7A_uc002rvr.2_Silent_p.F190F	NM_020458	NP_065191	Q9ULT0	TTC7A_HUMAN	tetratricopeptide repeat domain 7A	741							binding			breast(1)|skin(1)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.18)	Lung(47;0.0792)|LUSC - Lung squamous cell carcinoma(58;0.114)			CGGGCCTCTTCCCCACTTCTC	0.602													13	59					0	0	0.000422831	0	0
FOXN2	3344	broad.mit.edu	37	2	48586237	48586237	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr2:48586237C>T	uc002rwh.1	+	4	904	c.589C>T	c.(589-591)CTT>TTT	p.L197F		NM_002158	NP_002149	P32314	FOXN2_HUMAN	T-cell leukemia virus enhancer factor	197	Fork-head.				embryo development|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding				0		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)	Lung(47;0.0272)|LUSC - Lung squamous cell carcinoma(58;0.036)			TAAACCCAATCTTATCCAGGC	0.353													5	63					0	0	0.000602214	0	0
PNPT1	87178	broad.mit.edu	37	2	55913524	55913524	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr2:55913524G>A	uc002rzf.2	-	3	331	c.278C>T	c.(277-279)TCC>TTC	p.S93F	PNPT1_uc002rzg.2_RNA	NM_033109	NP_149100	Q8TCS8	PNPT1_HUMAN	polyribonucleotide nucleotidyltransferase 1	93					mRNA catabolic process|RNA processing	plasma membrane	3'-5'-exoribonuclease activity|polyribonucleotide nucleotidyltransferase activity|RNA binding				0			LUSC - Lung squamous cell carcinoma(58;0.127)|Lung(47;0.132)			CATAAACTGGGAAGGGGAAGG	0.378													10	37					0	0	0.000978159	0	0
EFEMP1	2202	broad.mit.edu	37	2	56098169	56098169	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr2:56098169G>A	uc002rzh.2	-	9	1420	c.1090C>T	c.(1090-1092)CCT>TCT	p.P364S	EFEMP1_uc002rzi.2_Missense_Mutation_p.P364S|EFEMP1_uc002rzj.2_Missense_Mutation_p.P364S|EFEMP1_uc010ypc.1_Missense_Mutation_p.P226S	NM_004105	NP_004096	Q12805	FBLN3_HUMAN	EGF-containing fibulin-like extracellular matrix	364	Mediates interaction with TIMP3.|EGF-like 6; calcium-binding (Potential).				negative regulation of chondrocyte differentiation|peptidyl-tyrosine phosphorylation|regulation of transcription, DNA-dependent|visual perception	extracellular space|proteinaceous extracellular matrix	calcium ion binding|epidermal growth factor receptor activity|epidermal growth factor receptor binding|growth factor activity			ovary(4)|pancreas(1)|skin(1)	6			LUSC - Lung squamous cell carcinoma(58;0.127)|Lung(47;0.132)			TCTTGACAAGGATTTCGTGGA	0.403													6	55					0	0	0.00116845	0	0
KIAA1841	84542	broad.mit.edu	37	2	61361297	61361297	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr2:61361297G>A	uc002say.2	+	21	2431	c.2054G>A	c.(2053-2055)GGC>GAC	p.G685D		NM_032506	NP_115895	Q6NSI8	K1841_HUMAN	KIAA1841 protein isoform b	Error:Variant_position_missing_in_Q6NSI8_after_alignment											0			Epithelial(17;0.193)			cccagagacggcactgtgtct	0.139													9	39					0	0	0.000442599	0	0
UGP2	7360	broad.mit.edu	37	2	64085049	64085050	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr2:64085049_64085050CC>TT	uc002scm.2	+	3	540_541	c.234_235CC>TT	c.(232-237)ATCCAG>ATTTAG	p.Q79*	UGP2_uc002scl.2_Nonsense_Mutation_p.Q68*|UGP2_uc010ypx.1_Nonsense_Mutation_p.Q88*	NM_006759	NP_006750	Q16851	UGPA_HUMAN	UDP-glucose pyrophosphorylase 2 isoform a	79					glycogen biosynthetic process|phosphorylation|UDP-glucose metabolic process|UDP-glucuronate biosynthetic process|xenobiotic metabolic process	cytosol	metal ion binding|protein binding|UTP:glucose-1-phosphate uridylyltransferase activity				0						GGGGAAAAATCCAGAGACCCCC	0.411													9	193					0	0	6.4e-05	0	0
ARHGAP25	9938	broad.mit.edu	37	2	69046428	69046428	+	Missense_Mutation	SNP	A	G	G			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr2:69046428A>G	uc002seu.2	+	9	1538	c.1174A>G	c.(1174-1176)AGG>GGG	p.R392G	ARHGAP25_uc010fdg.2_Missense_Mutation_p.R393G|ARHGAP25_uc010yql.1_Missense_Mutation_p.R353G|ARHGAP25_uc002sev.2_Missense_Mutation_p.R386G|ARHGAP25_uc002sew.2_Missense_Mutation_p.R385G|ARHGAP25_uc002sex.2_Missense_Mutation_p.R386G|ARHGAP25_uc002sey.2_Missense_Mutation_p.R119G	NM_001007231	NP_001007232	P42331	RHG25_HUMAN	Rho GTPase activating protein 25 isoform a	392					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(2)|breast(2)	4						CCGAATTTCTAGGACAGACAG	0.537													5	65					0	0	0.000602214	0	0
ALMS1	7840	broad.mit.edu	37	2	73653612	73653612	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr2:73653612C>T	uc002sje.1	+	7	1383	c.1272C>T	c.(1270-1272)GTC>GTT	p.V424V	ALMS1_uc002sjf.1_Silent_p.V381V	NM_015120	NP_055935	Q8TCU4	ALMS1_HUMAN	Alstrom syndrome 1	423					G2/M transition of mitotic cell cycle	centrosome|cilium|cytosol|microtubule basal body|spindle pole				skin(3)|ovary(2)|breast(2)|pancreas(1)|lung(1)	9						AGTCTGACGTCATTACTCTGG	0.403													28	228					0	0	0.001512	0	0
ZNF2	7549	broad.mit.edu	37	2	95845936	95845936	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr2:95845936C>T	uc002suf.2	+	4	655	c.193C>T	c.(193-195)CAA>TAA	p.Q65*	ZNF2_uc002sug.2_Nonsense_Mutation_p.Q23*|ZNF2_uc010yue.1_Intron|ZNF2_uc010fhs.2_Intron	NM_021088	NP_066574	Q9BSG1	ZNF2_HUMAN	zinc finger protein 2 isoform a	65	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Ovarian(717;0.00768)		READ - Rectum adenocarcinoma(193;0.0222)		TGTGATTTTCCAATTGAAGAG	0.463													13	96					0	0	0.00244969	0	0
Unknown	0	broad.mit.edu	37	2	96593025	96593025	+	RNA	SNP	C	T	T	rs75189823	by1000genomes	TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr2:96593025C>T	uc002sva.1	-	9		c.380G>A			uc010yug.1_RNA|uc002svc.1_RNA					Homo sapiens cDNA FLJ41632 fis, clone FCBBF1000297, highly  similar to Human protein immuno-reactive with anti-PTH polyclonal antibodies mRNA.																		TCTTTCTCATCACTTGTAGCC	0.318													5	42					0	0	0.000602214	0	0
ANKRD36	375248	broad.mit.edu	37	2	97860471	97860471	+	Missense_Mutation	SNP	C	T	T	rs150846613	by1000genomes	TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr2:97860471C>T	uc010yva.1	+	39	2702	c.2458C>T	c.(2458-2460)CGG>TGG	p.R820W	ANKRD36_uc002sxo.2_Intron|ANKRD36_uc002sxp.3_RNA|ANKRD36_uc002sxq.1_Intron	NM_001164315	NP_001157787	A6QL64	AN36A_HUMAN	ankyrin repeat domain 36	820											0						AGTGTCTTCTCGGAAAAAACC	0.338													6	14					0	0	0.000157383	0	0
VWA3B	200403	broad.mit.edu	37	2	98804438	98804438	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr2:98804438G>A	uc002syo.2	+	10	1576	c.1312G>A	c.(1312-1314)GAG>AAG	p.E438K	VWA3B_uc010yvh.1_Missense_Mutation_p.E288K|VWA3B_uc002syj.2_RNA|VWA3B_uc002syk.1_Intron|VWA3B_uc002syl.1_Intron|VWA3B_uc002sym.2_Missense_Mutation_p.E438K|VWA3B_uc002syn.1_Intron|VWA3B_uc010yvi.1_Missense_Mutation_p.E95K	NM_144992	NP_659429	Q502W6	VWA3B_HUMAN	von Willebrand factor A domain containing 3B	438										ovary(3)|large_intestine(2)|skin(1)	6						ATCTCCTTAGGAGACGAACAA	0.483													5	17					0	0	0.000157383	0	0
IL1R2	7850	broad.mit.edu	37	2	102626224	102626224	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr2:102626224G>A	uc002tbm.2	+	3	497	c.268G>A	c.(268-270)GAC>AAC	p.D90N	IL1R2_uc002tbn.2_Missense_Mutation_p.D90N|IL1R2_uc002tbo.1_Missense_Mutation_p.D90N	NM_004633	NP_004624	P27930	IL1R2_HUMAN	interleukin 1 receptor, type II precursor	90	Extracellular (Potential).|Ig-like C2-type 1.				immune response	integral to membrane|plasma membrane	interleukin-1, Type II, blocking receptor activity			ovary(1)|breast(1)	2					Anakinra(DB00026)	GTGGGCCCAGGACGGTGCTCT	0.597													15	155					0	0	0.00074312	0	0
SLC9A2	6549	broad.mit.edu	37	2	103300737	103300737	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr2:103300737G>A	uc002tca.2	+	5	1509	c.1367G>A	c.(1366-1368)CGG>CAG	p.R456Q		NM_003048	NP_003039	Q9UBY0	SL9A2_HUMAN	solute carrier family 9 (sodium/hydrogen	456	Extracellular (Potential).					integral to membrane|plasma membrane	sodium:hydrogen antiporter activity			central_nervous_system(3)|skin(3)|breast(2)	8						GTGTTTCCTCGGAAAAAATTG	0.433													13	131					0	0	0.000308642	0	0
IL1F9	56300	broad.mit.edu	37	2	113742450	113742450	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr2:113742450G>A	uc002tio.1	+	5	403	c.334G>A	c.(334-336)GAG>AAG	p.E112K	IL1F9_uc010fkr.1_Missense_Mutation_p.E77K	NM_019618	NP_062564	Q9NZH8	IL36G_HUMAN	interleukin 1 family, member 9	112					cell-cell signaling	extracellular space	cytokine activity|interleukin-1 receptor antagonist activity				0						TGGCCAACCCGAGCCCGTGAA	0.493													25	121					0	0	0.00127121	0	0
IL1F8	27177	broad.mit.edu	37	2	113783768	113783768	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr2:113783768C>T	uc002tiq.1	-	5	407	c.303G>A	c.(301-303)TGG>TGA	p.W101*		NM_014438	NP_055253	Q9NZH7	IL36B_HUMAN	interleukin 1 family, member 8 isoform 1	101					immune response	extracellular space	cytokine activity|interleukin-1 receptor binding			ovary(1)	1						caactagtttccagcaagtgt	0													6	64					0	0	0.00116845	0	0
ERCC3	2071	broad.mit.edu	37	2	128047347	128047347	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr2:128047347G>A	uc002toh.1	-	5	670	c.575C>T	c.(574-576)CCC>CTC	p.P192L	ERCC3_uc002toe.1_5'UTR|ERCC3_uc002tof.1_Missense_Mutation_p.P128L|ERCC3_uc002tog.1_Missense_Mutation_p.P128L|ERCC3_uc010flx.1_5'UTR|ERCC3_uc010yzh.1_RNA|ERCC3_uc010fly.2_3'UTR	NM_000122	NP_000113	P19447	ERCC3_HUMAN	excision repair cross-complementing rodent	192					cell cycle checkpoint|DNA topological change|hair cell differentiation|induction of apoptosis|interspecies interaction between organisms|mRNA capping|nucleotide-excision repair, DNA damage removal|nucleotide-excision repair, DNA duplex unwinding|nucleotide-excision repair, DNA incision|positive regulation of transcription from RNA polymerase II promoter|positive regulation of viral transcription|protein localization|response to oxidative stress|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase I promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	holo TFIIH complex	3'-5' DNA helicase activity|ATP binding|damaged DNA binding|protein C-terminus binding|protein N-terminus binding|transcription factor binding			ovary(2)|lung(2)|breast(2)|kidney(1)	7	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.073)		TCGGATCACGGGGTCCTGGAG	0.532			Mis|S			skin basal cell|skin squamous cell|melanoma		Direct_reversal_of_damage|NER	Xeroderma_Pigmentosum				19	81					0	0	0.00188189	0	0
PROC	5624	broad.mit.edu	37	2	128186281	128186281	+	Missense_Mutation	SNP	C	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr2:128186281C>A	uc002tok.2	+	9	1218	c.1145C>A	c.(1144-1146)TCT>TAT	p.S382Y	PROC_uc002tol.2_Missense_Mutation_p.S403Y|PROC_uc010yzi.1_Missense_Mutation_p.S438Y|PROC_uc010yzj.1_Missense_Mutation_p.S277Y|PROC_uc010yzk.1_Missense_Mutation_p.S437Y|PROC_uc002tom.2_Missense_Mutation_p.S416Y	NM_000312	NP_000303	P04070	PROC_HUMAN	protein C	382	Peptidase S1.				blood coagulation|leukocyte migration|negative regulation of apoptosis|negative regulation of blood coagulation|peptidyl-glutamic acid carboxylation|post-translational protein modification|proteolysis	endoplasmic reticulum lumen|Golgi lumen|plasma membrane	calcium ion binding|protein binding|serine-type endopeptidase activity				0	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0673)	Antihemophilic Factor(DB00025)|Drotrecogin alfa(DB00055)|Menadione(DB00170)|Sodium Tetradecyl Sulfate(DB00464)	AACATGGTGTCTGAGAACATG	0.612													17	98					3.41278e-10	1.3538e-09	0.000566183	1	0
ARHGEF4	50649	broad.mit.edu	37	2	131796599	131796599	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr2:131796599C>T	uc002tsa.1	+	6	1261	c.741C>T	c.(739-741)TTC>TTT	p.F247F	ARHGEF4_uc010fmw.1_Intron|ARHGEF4_uc002tsb.1_Silent_p.F247F|ARHGEF4_uc010fmx.1_Silent_p.F247F|ARHGEF4_uc002tsc.1_5'Flank	NM_015320	NP_056135	Q9NR80	ARHG4_HUMAN	Rho guanine nucleotide exchange factor 4 isoform	247	SH3.				apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|lamellipodium assembly|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|ruffle membrane	protein domain specific binding|Rac guanyl-nucleotide exchange factor activity			breast(3)|ovary(2)|skin(1)	6		Prostate(154;0.055)		BRCA - Breast invasive adenocarcinoma(221;0.097)		CAGCCAGCTTCGTTCGGGTAT	0.577													4	20					0	0	0.000602214	0	0
R3HDM1	23518	broad.mit.edu	37	2	136393490	136393490	+	Silent	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr2:136393490G>A	uc002tuo.2	+	10	1099	c.729G>A	c.(727-729)AAG>AAA	p.K243K	R3HDM1_uc010fni.2_Silent_p.K241K|R3HDM1_uc002tup.2_Silent_p.K187K|R3HDM1_uc010zbh.1_Silent_p.K75K	NM_015361	NP_056176	Q15032	R3HD1_HUMAN	R3H domain containing 1	243							nucleic acid binding			skin(1)	1				BRCA - Breast invasive adenocarcinoma(221;0.127)		AACATATTAAGGATGATAAAG	0.284													20	160					0	0	0.00278032	0	0
LCT	3938	broad.mit.edu	37	2	136566908	136566908	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr2:136566908C>T	uc002tuu.1	-	8	3020	c.3009G>A	c.(3007-3009)CTG>CTA	p.L1003L		NM_002299	NP_002290	P09848	LPH_HUMAN	lactase-phlorizin hydrolase preproprotein	1003	3.|Extracellular (Potential).|4 X approximate repeats.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|integral to plasma membrane|membrane fraction	cation binding|glycosylceramidase activity|lactase activity			ovary(7)|central_nervous_system(2)|skin(2)|pancreas(1)|lung(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.169)		AGCCATTGATCAGCCTGTTGT	0.517													5	44					0	0	0.000602214	0	0
ZEB2	9839	broad.mit.edu	37	2	145147437	145147437	+	Missense_Mutation	SNP	G	C	C			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr2:145147437G>C	uc002tvu.2	-	10	3706	c.3226C>G	c.(3226-3228)CAC>GAC	p.H1076D	ZEB2_uc002tvv.2_Missense_Mutation_p.H1070D|ZEB2_uc010zbm.1_Missense_Mutation_p.H1047D|ZEB2_uc010fnp.2_Intron	NM_014795	NP_055610	O60315	ZEB2_HUMAN	zinc finger homeobox 1b	1076	C2H2-type 7; atypical.					cytoplasm|nucleolus	phosphatase regulator activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|SMAD binding|zinc ion binding			ovary(5)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)	9				BRCA - Breast invasive adenocarcinoma(221;0.112)		GAATACCTGTGATTCATGTGC	0.592													5	49					0	0	0.000602214	0	0
KCNJ3	3760	broad.mit.edu	37	2	155555733	155555733	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr2:155555733G>A	uc002tyv.1	+	1	641	c.446G>A	c.(445-447)CGA>CAA	p.R149Q	KCNJ3_uc010zce.1_Missense_Mutation_p.R149Q	NM_002239	NP_002230	P48549	IRK3_HUMAN	potassium inwardly-rectifying channel J3	149	Extracellular (By similarity).				synaptic transmission	voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding			upper_aerodigestive_tract(1)|pancreas(1)	2					Halothane(DB01159)	TATGGCTACCGATACATCACA	0.557													7	32					0	0	0.000157383	0	0
BAZ2B	29994	broad.mit.edu	37	2	160294890	160294891	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr2:160294890_160294891GG>AA	uc002uao.2	-	8	1568_1569	c.1216_1217CC>TT	c.(1216-1218)CCT>TTT	p.P406F	BAZ2B_uc002uap.2_Missense_Mutation_p.P404F|BAZ2B_uc002uas.1_Missense_Mutation_p.P343F|BAZ2B_uc002uau.1_Missense_Mutation_p.P404F|BAZ2B_uc002uaq.1_Missense_Mutation_p.P334F|BAZ2B_uc002uat.3_3'UTR|BAZ2B_uc010fop.1_Missense_Mutation_p.P404F	NM_013450	NP_038478	Q9UIF8	BAZ2B_HUMAN	bromodomain adjacent to zinc finger domain, 2B	406					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|skin(1)	4						AAGAACATCAGGAGAAGGAACT	0.351													7	47					0	0	6.4e-05	0	0
SLC38A11	151258	broad.mit.edu	37	2	165793875	165793875	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr2:165793875G>A	uc002ucv.1	-	8	971	c.434C>T	c.(433-435)TCA>TTA	p.S145L	SLC38A11_uc002ucu.1_Missense_Mutation_p.S123L|SLC38A11_uc002ucw.1_Missense_Mutation_p.S145L	NM_173512	NP_775783	Q08AI6	S38AB_HUMAN	solute carrier family 38, member 11	145	Cytoplasmic (Potential).				amino acid transport|sodium ion transport	integral to membrane				ovary(1)	1						TGGACCCAGTGAAATTGCCCT	0.358													14	117					0	0	0.00074312	0	0
SCN2A	6326	broad.mit.edu	37	2	166234156	166234156	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr2:166234156G>A	uc002udc.2	+	23	4594	c.4304G>A	c.(4303-4305)CGA>CAA	p.R1435Q	SCN2A_uc002udd.2_Missense_Mutation_p.R1435Q|SCN2A_uc002ude.2_Missense_Mutation_p.R1435Q	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	1435	III.				myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	GTTGATTCACGAAATGTAAGT	0.269													7	68					0	0	0.000274275	0	0
SCN9A	6335	broad.mit.edu	37	2	167140996	167140996	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr2:167140996C>T	uc010fpl.2	-	12	2282	c.1941G>A	c.(1939-1941)GAG>GAA	p.E647E	uc002udp.2_Intron|SCN9A_uc002udr.1_Silent_p.E518E|SCN9A_uc002uds.1_Silent_p.E518E|SCN9A_uc002udt.1_Silent_p.E518E	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	647						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	CTATTATCACCTCTGGCAGAA	0.527													4	17					0	0	0.00024832	0	0
XIRP2	129446	broad.mit.edu	37	2	168101840	168101840	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr2:168101840G>A	uc002udx.2	+	8	3956	c.3938G>A	c.(3937-3939)AGA>AAA	p.R1313K	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.R1138K|XIRP2_uc010fpq.2_Missense_Mutation_p.R1091K|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_5'Flank	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	1138	Xin 22.				actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						AAAAGCTACAGAATGCTCTTT	0.368													6	57					0	0	0.00198382	0	0
NOSTRIN	115677	broad.mit.edu	37	2	169684702	169684702	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr2:169684702G>A	uc002ueg.2	+	4	236	c.232G>A	c.(232-234)GGA>AGA	p.G78R	NOSTRIN_uc002uef.2_Missense_Mutation_p.G78R|NOSTRIN_uc002uei.2_5'UTR|NOSTRIN_uc010fpu.2_Missense_Mutation_p.G50R|NOSTRIN_uc002ueh.2_5'UTR|NOSTRIN_uc002uej.2_5'UTR	NM_001039724	NP_001034813	Q8IVI9	NOSTN_HUMAN	nitric oxide synthase trafficker isoform 2	78					endocytosis|nitric oxide metabolic process|regulation of nitric-oxide synthase activity	cytoplasmic membrane-bounded vesicle|cytoskeleton|plasma membrane	protein binding				0						GGCCTCAGAGGGAATGAAATC	0.473													6	65					0	0	0.00198382	0	0
TTN	7273	broad.mit.edu	37	2	179413377	179413377	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr2:179413377C>T	uc010zfg.1	-	288	85496	c.85272G>A	c.(85270-85272)GGG>GGA	p.G28424G	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.G22119G|TTN_uc010zfi.1_Silent_p.G22052G|TTN_uc010zfj.1_Silent_p.G21927G	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	29351							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GGGTATATTTCCCTGCATCAT	0.468													15	115					0	0	0.000422831	0	0
TTN	7273	broad.mit.edu	37	2	179418078	179418078	+	Missense_Mutation	SNP	A	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr2:179418078A>T	uc010zfg.1	-	284	82069	c.81845T>A	c.(81844-81846)ATT>AAT	p.I27282N	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.I20977N|TTN_uc010zfi.1_Missense_Mutation_p.I20910N|TTN_uc010zfj.1_Missense_Mutation_p.I20785N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	28209							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGCTTTGGCAATAACAGAAGT	0.403													23	211					0	0	0.00188189	0	0
TTN	7273	broad.mit.edu	37	2	179596793	179596793	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr2:179596793C>T	uc010zfg.1	-	54	13395	c.13171G>A	c.(13171-13173)GAG>AAG	p.E4391K	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.E1052K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	5318							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GAACACAAACCTTTGACTATT	0.453													15	152					0	0	0.000422831	0	0
TTN	7273	broad.mit.edu	37	2	179597660	179597660	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr2:179597660C>T	uc010zfg.1	-	52	12735	c.12511G>A	c.(12511-12513)GAG>AAG	p.E4171K	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.E832K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	5098							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTGATGATCTCCAAAGAGGCT	0.493													6	34					0	0	0.00198382	0	0
TTN	7273	broad.mit.edu	37	2	179599144	179599144	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr2:179599144G>A	uc010zfg.1	-	49	11899	c.11675C>T	c.(11674-11676)TCG>TTG	p.S3892L	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.S553L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	4819							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ACTATTAAACGAAAAGATCTC	0.383													41	176					0	0	0.0025221	0	0
TTN	7273	broad.mit.edu	37	2	179654155	179654155	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr2:179654155C>T	uc010zfg.1	-	13	2232	c.2008G>A	c.(2008-2010)GAA>AAA	p.E670K	TTN_uc010zfh.1_Missense_Mutation_p.E624K|TTN_uc010zfi.1_Missense_Mutation_p.E624K|TTN_uc010zfj.1_Missense_Mutation_p.E624K|TTN_uc002unb.2_Missense_Mutation_p.E670K|TTN_uc010frg.1_Missense_Mutation_p.E252K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	670							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGTATTGTTTCTTGTTCTTTG	0.378													10	82					0	0	0.000442599	0	0
NCKAP1	10787	broad.mit.edu	37	2	183795425	183795425	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr2:183795425G>A	uc002upc.2	-	27	3353	c.2951C>T	c.(2950-2952)TCG>TTG	p.S984L	NCKAP1_uc002upb.2_Missense_Mutation_p.S990L	NM_013436	NP_038464	Q9Y2A7	NCKP1_HUMAN	NCK-associated protein 1 isoform 1	984					apoptosis|central nervous system development	integral to membrane|lamellipodium membrane	protein binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0942)|Epithelial(96;0.209)			CATTTTACCCGATTTTTGTGA	0.353													6	26					0	0	0.00198382	0	0
FAM171B	165215	broad.mit.edu	37	2	187605078	187605078	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr2:187605078G>A	uc002ups.2	+	2	474	c.362G>A	c.(361-363)GGA>GAA	p.G121E	FAM171B_uc002upr.1_Missense_Mutation_p.G121E	NM_177454	NP_803237	Q6P995	F171B_HUMAN	KIAA1946	121	Extracellular (Potential).					integral to membrane	DNA binding			ovary(6)|breast(3)|central_nervous_system(1)	10						AAAAGCAATGGAGCAGTGCTG	0.408													6	61					0	0	0.00116845	0	0
ICA1L	130026	broad.mit.edu	37	2	203693608	203693608	+	Missense_Mutation	SNP	A	G	G			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr2:203693608A>G	uc002uzh.1	-	3	289	c.125T>C	c.(124-126)TTG>TCG	p.L42S	ICA1L_uc002uzi.1_Missense_Mutation_p.L42S|ICA1L_uc002uzj.2_Missense_Mutation_p.L42S|ICA1L_uc002uzk.1_Missense_Mutation_p.L42S	NM_138468	NP_612477	Q8NDH6	ICA1L_HUMAN	islet cell autoantigen 1,69kDa-like isoform 1	42											0						AGACGCCACCAAGTGCTCATC	0.398													59	552					0	0	0.000781405	0	0
IDH1	3417	broad.mit.edu	37	2	209116179	209116179	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr2:209116179G>A	uc002vcs.2	-	3	343	c.97C>T	c.(97-99)CCC>TCC	p.P33S	IDH1_uc002vct.2_Missense_Mutation_p.P33S|IDH1_uc002vcu.2_Missense_Mutation_p.P33S	NM_005896	NP_005887	O75874	IDHC_HUMAN	isocitrate dehydrogenase 1 (NADP+), soluble	33					2-oxoglutarate metabolic process|cellular lipid metabolic process|glyoxylate cycle|isocitrate metabolic process|NADPH regeneration|tricarboxylic acid cycle	cytosol|peroxisomal matrix	isocitrate dehydrogenase (NADP+) activity|magnesium ion binding|NAD binding|protein homodimerization activity			central_nervous_system(2156)|haematopoietic_and_lymphoid_tissue(606)|bone(74)|thyroid(22)|large_intestine(4)|skin(2)|prostate(2)|autonomic_ganglia(1)|soft_tissue(1)	2868				Epithelial(149;0.0322)|LUSC - Lung squamous cell carcinoma(261;0.0711)|Lung(261;0.136)		TCCACGTAGGGAAAAATGAGT	0.338			Mis		gliobastoma 								9	61					0	0	0.000274275	0	0
PTH2R	5746	broad.mit.edu	37	2	209292968	209292968	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr2:209292968C>T	uc002vdb.2	+	2	331	c.118C>T	c.(118-120)CTT>TTT	p.L40F	PTH2R_uc010zjb.1_Missense_Mutation_p.L51F	NM_005048	NP_005039	P49190	PTH2R_HUMAN	parathyroid hormone 2 receptor precursor	40	Extracellular (Potential).					integral to plasma membrane	parathyroid hormone receptor activity			ovary(1)|breast(1)|skin(1)	3				Epithelial(149;0.0684)|Lung(261;0.0785)|LUSC - Lung squamous cell carcinoma(261;0.0836)		GCAGATTGTCCTTGTGCTGAA	0.418													7	46					0	0	0.000442599	0	0
AAMP	14	broad.mit.edu	37	2	219134700	219134700	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr2:219134700G>A	uc002vhk.2	-	1	194	c.110C>T	c.(109-111)CCG>CTG	p.P37L	PNKD_uc002vhn.2_5'Flank|AAMP_uc002vhj.2_5'Flank|AAMP_uc010fvo.2_Missense_Mutation_p.P37L|AAMP_uc002vhl.2_Missense_Mutation_p.P37L|PNKD_uc002vhm.1_5'Flank	NM_001087	NP_001078	Q13685	AAMP_HUMAN	angio-associated, migratory cell protein	37					angiogenesis|cell differentiation|positive regulation of endothelial cell migration|smooth muscle cell migration	cell surface|cytoplasm|plasma membrane	heparin binding			ovary(1)	1		Renal(207;0.0474)		Epithelial(149;7.19e-07)|all cancers(144;0.000131)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		TGGGTCCGGCGGACCGGGATC	0.622													16	95					0	0	0.000308642	0	0
COL4A4	1286	broad.mit.edu	37	2	227967551	227967551	+	Missense_Mutation	SNP	A	G	G			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr2:227967551A>G	uc010zlt.1	-	15	1538	c.884T>C	c.(883-885)ATT>ACT	p.I295T		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	295	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		TTTTGCCCCAATACCAGATTC	0.383													19	143					0	0	0.00278032	0	0
SPHKAP	80309	broad.mit.edu	37	2	228883592	228883592	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr2:228883592C>T	uc002vpq.2	-	7	2025	c.1978G>A	c.(1978-1980)GAA>AAA	p.E660K	SPHKAP_uc002vpp.2_Missense_Mutation_p.E660K|SPHKAP_uc010zlx.1_Missense_Mutation_p.E660K	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	660						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		ACGACATTTTCTGAGCACAGG	0.433													13	112					0	0	0.000308642	0	0
SPHKAP	80309	broad.mit.edu	37	2	228886589	228886589	+	Silent	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr2:228886589G>A	uc002vpq.2	-	6	582	c.535C>T	c.(535-537)CTG>TTG	p.L179L	SPHKAP_uc002vpp.2_Silent_p.L179L|SPHKAP_uc010zlx.1_Silent_p.L179L	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	179						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		AGACCAATCAGAAATTTGTTG	0.458													9	57					0	0	0.000673444	0	0
ALPP	250	broad.mit.edu	37	2	233245442	233245442	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr2:233245442C>T	uc002vsq.2	+	8	1140	c.975C>T	c.(973-975)CCC>CCT	p.P325P	ALPP_uc002vsr.2_5'Flank	NM_001632	NP_001623	P05187	PPB1_HUMAN	placental alkaline phosphatase preproprotein	325						anchored to membrane|cell surface|integral to membrane|plasma membrane	alkaline phosphatase activity|metal ion binding			ovary(1)	1		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;4.45e-22)|Kidney(3;4.42e-11)|KIRC - Kidney renal clear cell carcinoma(3;1.9e-09)|BRCA - Breast invasive adenocarcinoma(100;0.000767)|Lung(119;0.00566)|LUSC - Lung squamous cell carcinoma(224;0.00746)|STAD - Stomach adenocarcinoma(3;0.0181)|GBM - Glioblastoma multiforme(43;0.196)		GCAGGAACCCCCGCGGCTTCT	0.647													5	61					0	0	0.000157383	0	0
FASTKD5	60493	broad.mit.edu	37	20	3127538	3127538	+	Missense_Mutation	SNP	G	A	A	rs114422732	by1000genomes	TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr20:3127538G>A	uc002whz.2	-	2	2490	c.2179C>T	c.(2179-2181)CGG>TGG	p.R727W	uc002whv.1_Intron|UBOX5_uc002whw.2_Intron|UBOX5_uc002whx.2_Intron|UBOX5_uc002why.1_Intron	NM_021826	NP_068598	Q7L8L6	FAKD5_HUMAN	FAST kinase domains 5	727	RAP.				apoptosis|cellular respiration	mitochondrion	ATP binding|protein kinase activity				0						TAGCCAAGCCGAGCCAGCTGC	0.483													17	70					0	0	0.000422831	0	0
CSRP2BP	57325	broad.mit.edu	37	20	18143107	18143107	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr20:18143107G>A	uc002wqj.2	+	7	1811	c.1189G>A	c.(1189-1191)GTG>ATG	p.V397M	CSRP2BP_uc002wqk.2_Missense_Mutation_p.V269M|CSRP2BP_uc010zru.1_Missense_Mutation_p.V268M	NM_020536	NP_065397	Q9H8E8	CSR2B_HUMAN	CSRP2 binding protein	397					histone H3 acetylation	Ada2/Gcn5/Ada3 transcription activator complex|cytoplasm	LIM domain binding|N-acetyltransferase activity			lung(3)|ovary(2)|skin(1)	6						TTCTGGGCCAGTGGTTGGGGT	0.532													5	17					0	0	0.000602214	0	0
ASXL1	171023	broad.mit.edu	37	20	31022685	31022685	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr20:31022685C>T	uc002wxs.2	+	12	2596	c.2170C>T	c.(2170-2172)CTG>TTG	p.L724L	ASXL1_uc010geb.2_Silent_p.L615L	NM_015338	NP_056153	Q8IXJ9	ASXL1_HUMAN	additional sex combs like 1 isoform 1	724					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	PR-DUB complex	metal ion binding|protein binding			haematopoietic_and_lymphoid_tissue(239)|large_intestine(6)|central_nervous_system(2)|ovary(1)	248						CCTGCCTTCTCTGAGAAAGGA	0.562			F|N|Mis		MDS|CMML								4	26					0	0	0.000602214	0	0
SAMHD1	25939	broad.mit.edu	37	20	35547838	35547838	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr20:35547838G>A	uc002xgh.1	-	7	911	c.781C>T	c.(781-783)CCT>TCT	p.P261S		NM_015474	NP_056289	Q9Y3Z3	SAMH1_HUMAN	SAM domain- and HD domain-containing protein 1	261	HD.				defense response to virus|innate immune response|regulation of innate immune response	nucleus	metal ion binding|phosphoric diester hydrolase activity				0		Myeloproliferative disorder(115;0.00878)				TCTTCTTCAGGGATGAGACCA	0.348													15	63					0	0	0.000308642	0	0
PTPRT	11122	broad.mit.edu	37	20	40790122	40790122	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr20:40790122C>T	uc002xkg.2	-	17	2736	c.2552G>A	c.(2551-2553)CGC>CAC	p.R851H	PTPRT_uc010ggj.2_Missense_Mutation_p.R870H|PTPRT_uc010ggi.2_Missense_Mutation_p.R54H	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	851	Cytoplasmic (Potential).				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				GTCACAGGTGCGGTAGGGATG	0.592													6	55					0	0	0.00198382	0	0
EYA2	2139	broad.mit.edu	37	20	45644851	45644851	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr20:45644851C>T	uc002xsm.2	+	5	704	c.330C>T	c.(328-330)TCC>TCT	p.S110S	EYA2_uc010ghp.2_Silent_p.S110S|EYA2_uc002xsn.2_Silent_p.S115S|EYA2_uc002xso.2_Silent_p.S110S|EYA2_uc002xsp.2_Silent_p.S110S|EYA2_uc002xsq.2_Silent_p.S110S	NM_005244	NP_005235	O00167	EYA2_HUMAN	eyes absent 2 isoform a	110					DNA repair|histone dephosphorylation|mesodermal cell fate specification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	magnesium ion binding|protein binding|protein tyrosine phosphatase activity			ovary(1)	1		Myeloproliferative disorder(115;0.0241)				TGAACCATTCCCCTGGCCAGA	0.532													14	117					0	0	0.000308642	0	0
SULF2	55959	broad.mit.edu	37	20	46295078	46295078	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr20:46295078C>T	uc002xto.2	-	12	2061	c.1731G>A	c.(1729-1731)AAG>AAA	p.K577K	SULF2_uc002xtr.2_Silent_p.K577K|SULF2_uc002xtq.2_Silent_p.K577K|SULF2_uc010zyd.1_5'Flank	NM_018837	NP_061325	Q8IWU5	SULF2_HUMAN	sulfatase 2 isoform a precursor	577					bone development|heparan sulfate proteoglycan metabolic process|kidney development|negative regulation of fibroblast growth factor receptor signaling pathway	cell surface|endoplasmic reticulum|extracellular space|Golgi stack	arylsulfatase activity|calcium ion binding			ovary(2)|breast(2)|pancreas(1)|skin(1)	6						CCCCACCATCCTTGTCATCTT	0.627													8	59					0	0	0.000157383	0	0
ZNFX1	57169	broad.mit.edu	37	20	47870326	47870326	+	Silent	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr20:47870326G>A	uc002xui.2	-	11	3229	c.2982C>T	c.(2980-2982)ATC>ATT	p.I994I		NM_021035	NP_066363	Q9P2E3	ZNFX1_HUMAN	zinc finger, NFX1-type containing 1	994							metal ion binding			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(12;0.00173)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			CCTTCTGTAGGATCTGGCGGT	0.557													14	194					0	0	0.00152264	0	0
CASS4	57091	broad.mit.edu	37	20	55028110	55028110	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr20:55028110C>T	uc002xxp.2	+	6	2103	c.1878C>T	c.(1876-1878)ACC>ACT	p.T626T	CASS4_uc002xxq.3_Silent_p.T626T|CASS4_uc002xxr.2_Silent_p.T626T|CASS4_uc010zze.1_Silent_p.T572T|CASS4_uc010gio.2_Intron	NM_001164116	NP_001157588	Q9NQ75	CASS4_HUMAN	HEF-like protein isoform a	626					cell adhesion	cytoplasm|cytoskeleton|focal adhesion	two-component sensor activity			ovary(2)|skin(1)	3						AAAAGAGTACCCCTTCCACTA	0.413													6	32					0	0	0.00198382	0	0
C20orf106	200232	broad.mit.edu	37	20	55100954	55100954	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr20:55100954C>T	uc002xxx.2	+	2	424	c.344C>T	c.(343-345)ACC>ATC	p.T115I	GCNT7_uc010zzg.1_5'UTR|C20orf107_uc010zzh.1_Intron	NM_001012971	NP_001012989	Q5JX71	CT106_HUMAN	hypothetical protein LOC200232 precursor	115	Cytoplasmic (Potential).|Potential.					integral to membrane					0			Colorectal(105;0.202)			GCATTCAATACCTTAATGGAA	0.473													7	78					0	0	0.000157383	0	0
ZNF831	128611	broad.mit.edu	37	20	57829603	57829603	+	Silent	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr20:57829603G>A	uc002yan.2	+	5	4839	c.4839G>A	c.(4837-4839)AGG>AGA	p.R1613R		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	1613						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					GTGACGGTAGGAAACGTCAGG	0.493													7	65					0	0	0.00198382	0	0
CDH4	1002	broad.mit.edu	37	20	60485526	60485526	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr20:60485526C>T	uc002ybn.1	+	9	1251	c.1237C>T	c.(1237-1239)CTC>TTC	p.L413F	CDH4_uc002ybp.1_Missense_Mutation_p.L339F	NM_001794	NP_001785	P55283	CADH4_HUMAN	cadherin 4, type 1 preproprotein	413	Cadherin 3.|Extracellular (Potential).				adherens junction organization|cell junction assembly		calcium ion binding			lung(3)|ovary(2)|skin(1)	6			BRCA - Breast invasive adenocarcinoma(19;2.36e-08)			GGTCGCAAACCTCACGGTGAT	0.522													4	31					0	0	0.00024832	0	0
ZNF512B	57473	broad.mit.edu	37	20	62595261	62595261	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr20:62595261G>A	uc002yhl.1	-	9	1540	c.1486C>T	c.(1486-1488)CCT>TCT	p.P496S		NM_020713	NP_065764	Q96KM6	Z512B_HUMAN	zinc finger protein 512B	496					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(38;2.14e-11)|all_epithelial(29;3.41e-13)|Lung NSC(23;3.41e-09)|all_lung(23;1.06e-08)					TGCTCTTCAGGGCCACCTGTG	0.652													7	36					0	0	0.00198382	0	0
CRYZL1	9946	broad.mit.edu	37	21	34975835	34975835	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr21:34975835G>A	uc011adw.1	-	7	520	c.340C>T	c.(340-342)CCA>TCA	p.P114S	DONSON_uc002ysn.1_Intron|CRYZL1_uc002ysr.1_Missense_Mutation_p.P138S|CRYZL1_uc002yss.1_RNA|CRYZL1_uc002yst.1_RNA	NM_145858	NP_665857	O95825	QORL1_HUMAN	crystallin, zeta-like 1	114					quinone cofactor metabolic process	cytosol	NADP binding|NADPH:quinone reductase activity|zinc ion binding				0						ACCTTTTCTGGTTTATGAACT	0.284													7	50					0	0	0.000157383	0	0
KCNE1	3753	broad.mit.edu	37	21	35821668	35821668	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr21:35821668C>T	uc010gmp.2	-	2	695	c.265G>A	c.(265-267)GAG>AAG	p.E89K	KCNE1_uc002ytz.2_Missense_Mutation_p.E89K|KCNE1_uc010gmq.2_Missense_Mutation_p.E89K|KCNE1_uc010gmr.2_Missense_Mutation_p.E89K|KCNE1_uc010gms.2_Missense_Mutation_p.E89K|KCNE1_uc002yua.2_RNA	NM_001127670	NP_001121142	P15382	KCNE1_HUMAN	potassium voltage-gated channel, Isk-related	89	Cytoplasmic (Potential).				blood circulation|membrane depolarization|muscle contraction|sensory perception of sound	lysosome	delayed rectifier potassium channel activity|potassium channel regulator activity			ovary(2)	2					Indapamide(DB00808)	TTGTCCTTCTCTTGCCAGGCA	0.547													42	370					0	0	0.00148497	0	0
SH3BGR	6450	broad.mit.edu	37	21	40847107	40847107	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr21:40847107C>T	uc002yya.2	+	3	521	c.467C>T	c.(466-468)TCC>TTC	p.S156F	SH3BGR_uc002yxz.2_Missense_Mutation_p.S45F	NM_007341	NP_031367	P55822	SH3BG_HUMAN	SH3-binding domain and glutamic acid-rich	156					protein complex assembly	cytosol	SH3 domain binding|SH3/SH2 adaptor activity				0		all_cancers(19;1.16e-23)|all_epithelial(19;1.22e-20)|Prostate(19;2.55e-06)|Breast(209;0.0133)		STAD - Stomach adenocarcinoma(101;0.00151)		ATTATTTATTCCTTCCTTGGT	0.373													5	29					0	0	0.00116845	0	0
UBASH3A	53347	broad.mit.edu	37	21	43857599	43857599	+	Silent	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr21:43857599G>A	uc002zbe.2	+	11	1431	c.1395G>A	c.(1393-1395)GGG>GGA	p.G465G	UBASH3A_uc002zbf.2_Silent_p.G427G|UBASH3A_uc010gpc.2_RNA|UBASH3A_uc010gpd.2_Intron|UBASH3A_uc010gpe.2_Silent_p.G427G	NM_018961	NP_061834	P57075	UBS3A_HUMAN	ubiquitin associated and SH3 domain containing,	465	Phosphatase-like.					cytosol|nucleus				ovary(3)	3						ATTTTCCAGGGGACGCGCTAC	0.473													9	44					0	0	0.000442599	0	0
LOC96610	96610	broad.mit.edu	37	22	22657653	22657653	+	RNA	SNP	C	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr22:22657653C>A	uc011aim.1	+	25		c.1399C>A			LOC96610_uc011aiq.1_RNA|LOC96610_uc011aip.1_RNA|LOC96610_uc010gto.2_RNA					Parts of antibodies, mostly variable regions.												0						AATCGGGCCCCGATACTCAGG	0.498													4	27					0.000602214	0.00236128	0.000602214	1	0
ZNF280A	129025	broad.mit.edu	37	22	22868501	22868501	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr22:22868501C>T	uc002zwe.2	-	2	1707	c.1454G>A	c.(1453-1455)GGG>GAG	p.G485E	LOC96610_uc011aim.1_Intron	NM_080740	NP_542778	P59817	Z280A_HUMAN	zinc finger protein 280A	485					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	all_hematologic(9;0.0135)|Acute lymphoblastic leukemia(84;0.17)	all_hematologic(6;1.74e-30)|Acute lymphoblastic leukemia(6;7.75e-22)		READ - Rectum adenocarcinoma(21;0.145)		ACGAGGGAACCCTTGCAGTTG	0.428													14	73					0	0	0.000422831	0	0
ZNF280A	129025	broad.mit.edu	37	22	22868747	22868747	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr22:22868747G>A	uc002zwe.2	-	2	1461	c.1208C>T	c.(1207-1209)TCG>TTG	p.S403L	LOC96610_uc011aim.1_Intron	NM_080740	NP_542778	P59817	Z280A_HUMAN	zinc finger protein 280A	403					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	all_hematologic(9;0.0135)|Acute lymphoblastic leukemia(84;0.17)	all_hematologic(6;1.74e-30)|Acute lymphoblastic leukemia(6;7.75e-22)		READ - Rectum adenocarcinoma(21;0.145)		AAAGACCGACGATCTGTAATG	0.408													7	88					0	0	0.000157383	0	0
OSM	5008	broad.mit.edu	37	22	30659972	30659972	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr22:30659972C>T	uc003ahb.2	-	3	711	c.659G>A	c.(658-660)CGG>CAG	p.R220Q		NM_020530	NP_065391	P13725	ONCM_HUMAN	oncostatin M precursor	220				R->G: Inhibits propeptide cleavage.	cell proliferation|immune response|negative regulation of cell proliferation|negative regulation of hormone secretion|positive regulation of cell division|positive regulation of cell proliferation|positive regulation of MAPKKK cascade|positive regulation of peptidyl-serine phosphorylation|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of transcription from RNA polymerase II promoter|regulation of growth	extracellular space|oncostatin-M receptor complex	cytokine activity|growth factor activity|oncostatin-M receptor binding			skin(1)	1			Epithelial(10;0.206)			GCTGTGTCTCCGGCTCCGGTT	0.657													7	53					0	0	0.000274275	0	0
TBC1D10A	83874	broad.mit.edu	37	22	30689645	30689645	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr22:30689645G>A	uc011akt.1	-	8	1069	c.1045C>T	c.(1045-1047)CAG>TAG	p.Q349*	GATSL3_uc003ahf.2_RNA|GATSL3_uc003ahg.2_RNA|GATSL3_uc003ahh.2_RNA|GATSL3_uc010gvq.2_RNA|GATSL3_uc003ahi.2_Nonsense_Mutation_p.Q207*|TBC1D10A_uc003ahj.3_Nonsense_Mutation_p.Q261*|TBC1D10A_uc010gvu.2_Nonsense_Mutation_p.Q356*|TBC1D10A_uc003ahk.3_Nonsense_Mutation_p.Q349*	NM_031937	NP_114143	Q9BXI6	TB10A_HUMAN	TBC1 domain family, member 10A	349						intracellular|microvillus	guanyl-nucleotide exchange factor activity|PDZ domain binding|Rab GTPase activator activity			ovary(1)	1						TGTACCTCCTGGACCAGAAAG	0.637													5	33					0	0	0.00198382	0	0
SREBF2	6721	broad.mit.edu	37	22	42271552	42271552	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr22:42271552C>T	uc003bbi.2	+	7	1379	c.1210C>T	c.(1210-1212)CTA>TTA	p.L404L	WBP2NL_uc011ape.1_Intron|LOC339674_uc003bba.1_Intron|SREBF2_uc003bbj.2_RNA	NM_004599	NP_004590	Q12772	SRBP2_HUMAN	sterol regulatory element-binding transcription	404	Interaction with LMNA (By similarity).|Cytoplasmic (Potential).				cholesterol metabolic process	ER to Golgi transport vesicle membrane|Golgi membrane|nucleus|SREBP-SCAP-Insig complex	protein C-terminus binding			breast(2)|ovary(1)|central_nervous_system(1)	4						TGCAGAGCTTCTAAAGGGCAT	0.507													30	160					0	0	0.00209593	0	0
ACR	49	broad.mit.edu	37	22	51178298	51178298	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr22:51178298C>T	uc003bnh.3	+	3	470	c.458C>T	c.(457-459)TCG>TTG	p.S153L	uc003bng.2_5'Flank|ACR_uc010hbh.1_Missense_Mutation_p.S153L	NM_001097	NP_001088	P10323	ACRO_HUMAN	acrosin precursor	153	Peptidase S1.				acrosome matrix dispersal|activation of adenylate cyclase activity	acrosomal matrix|protein complex	amidase activity|copper ion binding|DNA binding|drug binding|fucose binding|mannose binding|protein binding|serine-type endopeptidase activity|zinc ion binding				0		all_cancers(38;8.8e-15)|all_epithelial(38;1.12e-12)|all_lung(38;3.07e-05)|Breast(42;6.27e-05)|Lung NSC(38;0.000813)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;1.1e-06)|LUAD - Lung adenocarcinoma(64;0.247)		CCTCCCATTTCGTGTGGGCGC	0.547													12	77					0	0	0.00136819	0	0
CAMK1	8536	broad.mit.edu	37	3	9799255	9799255	+	Missense_Mutation	SNP	C	T	T	rs56033923	by1000genomes	TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr3:9799255C>T	uc003bst.2	-	12	1259	c.1081G>A	c.(1081-1083)GAA>AAA	p.E361K	OGG1_uc003bsk.2_Intron|OGG1_uc003bsl.2_Intron|OGG1_uc003bsm.2_Intron|OGG1_uc003bsn.2_Intron|OGG1_uc003bso.2_Intron|CAMK1_uc003bsu.2_RNA|CAMK1_uc003bss.2_Silent_p.Q170Q	NM_003656	NP_003647	Q14012	KCC1A_HUMAN	calcium/calmodulin-dependent protein kinase I	361					cell differentiation|nervous system development|positive regulation of muscle cell differentiation|signal transduction	cytoplasm|nucleus	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			ovary(1)|skin(1)	2	Medulloblastoma(99;0.227)			OV - Ovarian serous cystadenocarcinoma(96;0.0475)		GGGGACAGTTCTGTGCCCGGC	0.682													8	33					0	0	0.000442599	0	0
WNT7A	7476	broad.mit.edu	37	3	13916511	13916511	+	Silent	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr3:13916511G>A	uc003bye.1	-	2	536	c.231C>T	c.(229-231)TTC>TTT	p.F77F		NM_004625	NP_004616	O00755	WNT7A_HUMAN	wingless-type MMTV integration site family,	77					activation of JUN kinase activity|anterior/posterior pattern formation|canonical Wnt receptor signaling pathway|cell proliferation in forebrain|cellular response to transforming growth factor beta stimulus|central nervous system vasculogenesis|cerebellar granule cell differentiation|dorsal/ventral pattern formation|embryonic axis specification|embryonic digit morphogenesis|embryonic forelimb morphogenesis|embryonic leg morphogenesis|lens fiber cell development|negative regulation of neurogenesis|palate development|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of epithelial cell proliferation involved in wound healing|positive regulation of JNK cascade|positive regulation of synaptogenesis|positive regulation of transcription from RNA polymerase II promoter|regulation of axon diameter|satellite cell activation|satellite cell maintenance involved in skeletal muscle regeneration|sex differentiation|uterus development|Wnt receptor signaling pathway involved in wound healing, spreading of epidermal cells|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	cytokine activity|frizzled binding|receptor agonist activity|signal transducer activity			ovary(2)|breast(1)	3						GGCCATTGCGGAACTGAAACT	0.607													4	39					0	0	0.00116845	0	0
TMEM43	79188	broad.mit.edu	37	3	14176677	14176677	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr3:14176677C>T	uc003byk.2	+	9	979	c.725C>T	c.(724-726)TCC>TTC	p.S242F	TMEM43_uc003byl.1_Missense_Mutation_p.S122F	NM_024334	NP_077310	Q9BTV4	TMM43_HUMAN	transmembrane protein 43	242	Lumenal (Potential).					endoplasmic reticulum|Golgi apparatus|integral to membrane|nuclear inner membrane				ovary(1)	1						TTGCGTGTCTCCTTTTCCTAT	0.627													4	19					0	0	0.000602214	0	0
STAC	6769	broad.mit.edu	37	3	36527639	36527639	+	Silent	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr3:36527639G>A	uc003cgh.1	+	5	624	c.585G>A	c.(583-585)AAG>AAA	p.K195K	STAC_uc010hgd.1_RNA|STAC_uc011aya.1_Silent_p.K134K	NM_003149	NP_003140	Q99469	STAC_HUMAN	SH3 and cysteine rich domain	195					intracellular signal transduction	cytoplasm|soluble fraction	metal ion binding			skin(2)|ovary(1)|pancreas(1)	4						GTGGCAATAAGGTGGACCCTG	0.582													18	131					0	0	0.00229938	0	0
STAC	6769	broad.mit.edu	37	3	36534657	36534657	+	Silent	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr3:36534657G>A	uc003cgh.1	+	6	741	c.702G>A	c.(700-702)GTG>GTA	p.V234V	STAC_uc010hgd.1_RNA|STAC_uc011aya.1_Silent_p.V173V	NM_003149	NP_003140	Q99469	STAC_HUMAN	SH3 and cysteine rich domain	234					intracellular signal transduction	cytoplasm|soluble fraction	metal ion binding			skin(2)|ovary(1)|pancreas(1)	4						CAGATCTTGTGGAGGTTCCTG	0.483													7	88					0	0	0.000157383	0	0
SCN10A	6336	broad.mit.edu	37	3	38770223	38770223	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr3:38770223C>T	uc003ciq.2	-	15	2450	c.2450G>A	c.(2449-2451)CGA>CAA	p.R817Q		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	817	II.				sensory perception	voltage-gated sodium channel complex		p.R817*(1)		ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	GATATTTTTTCGGTTGTTACG	0.537													8	46					0	0	0.000274275	0	0
SCN11A	11280	broad.mit.edu	37	3	38924850	38924850	+	Missense_Mutation	SNP	G	C	C			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr3:38924850G>C	uc011ays.1	-	18	3292	c.3093C>G	c.(3091-3093)AGC>AGG	p.S1031R	SCN11A_uc010hhn.1_Missense_Mutation_p.S109R	NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	1031					response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	TCTTGTCCACGCTACAGCATG	0.368													7	63					0	0	0.000157383	0	0
SCN11A	11280	broad.mit.edu	37	3	38936347	38936347	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr3:38936347G>A	uc011ays.1	-	15	2711	c.2512C>T	c.(2512-2514)CGA>TGA	p.R838*	SCN11A_uc010hhn.1_5'UTR	NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	838					response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	CGGCGGAATCGATCCAGTGCT	0.453													10	61					0	0	0.000442599	0	0
SCN11A	11280	broad.mit.edu	37	3	38949515	38949515	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr3:38949515C>T	uc011ays.1	-	10	1597	c.1398G>A	c.(1396-1398)AGG>AGA	p.R466R		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	466					response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	AGAAGGACTTCCTTTTCTTAT	0.403													12	80					0	0	0.000978159	0	0
ZNF662	389114	broad.mit.edu	37	3	42956557	42956557	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr3:42956557C>T	uc003cmi.2	+	5	1344	c.992C>T	c.(991-993)CCT>CTT	p.P331L	ZNF662_uc003cmk.2_Missense_Mutation_p.P357L|ZNF662_uc003cmj.2_Missense_Mutation_p.P223L	NM_207404	NP_997287	Q6ZS27	ZN662_HUMAN	zinc finger protein 662 isoform 1	331					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				KIRC - Kidney renal clear cell carcinoma(284;0.217)		GGGGAGAAGCCTTACGAATGT	0.493													5	39					0	0	0.00116845	0	0
CDCP1	64866	broad.mit.edu	37	3	45135052	45135052	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr3:45135052C>T	uc003com.2	-	6	1479	c.1344G>A	c.(1342-1344)TGG>TGA	p.W448*		NM_022842	NP_073753	Q9H5V8	CDCP1_HUMAN	CUB domain-containing protein 1 isoform 1	448	CUB.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.00928)|KIRC - Kidney renal clear cell carcinoma(197;0.0519)|Kidney(197;0.0651)		CCAGCAGCTTCCAGGAGAAGT	0.597													9	68					0	0	0.000442599	0	0
SLC6A20	54716	broad.mit.edu	37	3	45817419	45817419	+	Missense_Mutation	SNP	C	G	G			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr3:45817419C>G	uc011bai.1	-	4	540	c.416G>C	c.(415-417)TGT>TCT	p.C139S	SLC6A20_uc011baj.1_Missense_Mutation_p.C139S	NM_020208	NP_064593	Q9NP91	S6A20_HUMAN	solute carrier family 6, member 20 isoform 1	139	Extracellular (Potential).				cellular nitrogen compound metabolic process|glycine transport|proline transport	apical plasma membrane|integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;0.01)|KIRC - Kidney renal clear cell carcinoma(197;0.0225)|Kidney(197;0.0267)		CGCCTTCTCACACTCCTCATC	0.587													3	80					0	0	0.000602214	0	0
CELSR3	1951	broad.mit.edu	37	3	48688421	48688421	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr3:48688421G>A	uc003cul.2	-	15	6555	c.6274C>T	c.(6274-6276)CAC>TAC	p.H2092Y	CELSR3_uc003cuf.1_Missense_Mutation_p.H2162Y|CELSR3_uc010hkg.2_Missense_Mutation_p.H70Y	NM_001407	NP_001398	Q9NYQ7	CELR3_HUMAN	cadherin EGF LAG seven-pass G-type receptor 3	2092	Extracellular (Potential).|Laminin EGF-like.				homophilic cell adhesion|multicellular organismal development|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(5)|upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)	11				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		TGCCCGCTGTGGGGTGCACAT	0.657													6	47					0	0	0.00116845	0	0
MST1R	4486	broad.mit.edu	37	3	49940718	49940718	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr3:49940718G>A	uc003cxy.3	-	1	589	c.325C>T	c.(325-327)CCA>TCA	p.P109S	MST1R_uc011bdd.1_Missense_Mutation_p.P109S|MST1R_uc011bde.1_Missense_Mutation_p.P109S|MST1R_uc011bdf.1_Missense_Mutation_p.P109S|MST1R_uc011bdg.1_Missense_Mutation_p.P109S	NM_002447	NP_002438	Q04912	RON_HUMAN	macrophage stimulating 1 receptor precursor	109	Extracellular (Potential).|Sema.				cellular component movement|defense response|multicellular organismal development|positive regulation of cell proliferation|single fertilization|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|macrophage colony-stimulating factor receptor activity|protein binding			ovary(5)|lung(1)	6				BRCA - Breast invasive adenocarcinoma(193;4.65e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.00553)|Kidney(197;0.00625)		TGGGGTCCTGGGCCACAGGCT	0.677													7	43					0	0	0.00198382	0	0
CACNA2D3	55799	broad.mit.edu	37	3	54925472	54925472	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr3:54925472C>T	uc003dhf.2	+	25	2289	c.2241C>T	c.(2239-2241)ACC>ACT	p.T747T	CACNA2D3_uc003dhg.1_Silent_p.T653T|CACNA2D3_uc003dhh.1_RNA|uc003dhk.1_Intron	NM_018398	NP_060868	Q8IZS8	CA2D3_HUMAN	calcium channel, voltage-dependent, alpha	747	Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			large_intestine(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7				KIRC - Kidney renal clear cell carcinoma(284;0.00287)|Kidney(284;0.00327)		AGCAGCTCACCAATCAGTAAG	0.507													11	29					0	0	0.000978159	0	0
OR5H1	26341	broad.mit.edu	37	3	97851872	97851872	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr3:97851872G>A	uc011bgt.1	+	1	331	c.331G>A	c.(331-333)GAA>AAA	p.E111K		NM_001005338	NP_001005338	A6NKK0	OR5H1_HUMAN	olfactory receptor, family 5, subfamily H,	111	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2						TGTAACCACGGAATGTTTTCT	0.408													16	163					0	0	0.00074312	0	0
OR5H2	79310	broad.mit.edu	37	3	98002486	98002486	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr3:98002486C>T	uc003dsj.1	+	1	755	c.755C>T	c.(754-756)TCT>TTT	p.S252F		NM_001005482	NP_001005482	Q8NGV7	OR5H2_HUMAN	olfactory receptor, family 5, subfamily H,	252	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3						CATCTCTTATCTGTCTCTTTA	0.393													8	46					0	0	0.000442599	0	0
HHLA2	11148	broad.mit.edu	37	3	108070690	108070690	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr3:108070690C>T	uc003dwy.3	+	3	197	c.30C>T	c.(28-30)TTC>TTT	p.F10F	HHLA2_uc011bhl.1_Missense_Mutation_p.P34S|HHLA2_uc010hpu.2_Silent_p.F10F|HHLA2_uc003dwz.2_Silent_p.F10F	NM_007072	NP_009003	Q9UM44	HHLA2_HUMAN	HERV-H LTR-associating 2 precursor	10						integral to membrane				ovary(1)	1						TGTCTTTCTTCCTCATTCTCA	0.353													7	41					0	0	0.000274275	0	0
ZBED2	79413	broad.mit.edu	37	3	111312476	111312476	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr3:111312476C>T	uc003dxy.2	-	2	1458	c.573G>A	c.(571-573)ATG>ATA	p.M191I	CD96_uc003dxv.2_Intron|CD96_uc003dxw.2_Intron|CD96_uc003dxx.2_Intron|CD96_uc010hpy.1_Intron	NM_024508	NP_078784	Q9BTP6	ZBED2_HUMAN	zinc finger, BED domain containing 2	191							DNA binding|metal ion binding			skin(1)	1						CCTTCCACTTCATCTCCAGGA	0.557													7	56					0	0	0.000157383	0	0
KIAA2018	205717	broad.mit.edu	37	3	113375292	113375292	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr3:113375292G>A	uc003eam.2	-	7	5648	c.5237C>T	c.(5236-5238)CCC>CTC	p.P1746L	KIAA2018_uc003eal.2_Missense_Mutation_p.P1690L	NM_001009899	NP_001009899	Q68DE3	K2018_HUMAN	hypothetical protein LOC205717	1746					regulation of transcription, DNA-dependent	membrane|nucleus	calcium ion binding|DNA binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity			skin(2)|ovary(1)	3						ATTACTCTGGGGCTGTTGACT	0.428													15	67					0	0	0.00244969	0	0
EAF2	55840	broad.mit.edu	37	3	121573544	121573544	+	Missense_Mutation	SNP	C	T	T	rs143406125		TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr3:121573544C>T	uc003een.2	+	3	311	c.212C>T	c.(211-213)CCA>CTA	p.P71L	EAF2_uc003eeo.2_Intron	NM_018456	NP_060926	Q96CJ1	EAF2_HUMAN	ELL associated factor 2	71	Necessary for interaction with ELL.				apoptosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear speck	protein binding				0				GBM - Glioblastoma multiforme(114;0.0972)		GGTTCAACTCCACCAGTAACT	0.323													6	55					0	0	0.00116845	0	0
ILDR1	286676	broad.mit.edu	37	3	121712760	121712760	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr3:121712760G>A	uc003ees.2	-	7	942	c.836C>T	c.(835-837)CCT>CTT	p.P279L	ILDR1_uc003eeq.2_Missense_Mutation_p.P247L|ILDR1_uc003eer.2_Missense_Mutation_p.P235L|ILDR1_uc010hrg.2_Missense_Mutation_p.P190L	NM_175924	NP_787120	Q86SU0	ILDR1_HUMAN	immunoglobulin-like domain containing receptor	279	Cytoplasmic (Potential).					cytosol|integral to membrane|plasma membrane	receptor activity			skin(1)	1				GBM - Glioblastoma multiforme(114;0.156)		GGCGATGGGAGGCTGATTGGT	0.542													4	47					0	0	0.00116845	0	0
MYLK	4638	broad.mit.edu	37	3	123419615	123419615	+	Silent	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr3:123419615G>A	uc003ego.2	-	18	2982	c.2700C>T	c.(2698-2700)CTC>CTT	p.L900L	MYLK_uc011bjw.1_Silent_p.L900L|MYLK_uc003egp.2_Silent_p.L831L|MYLK_uc003egq.2_Silent_p.L900L|MYLK_uc003egr.2_Silent_p.L831L|MYLK_uc003egs.2_Silent_p.L724L|MYLK_uc003egt.2_Silent_p.L91L	NM_053025	NP_444253	Q15746	MYLK_HUMAN	myosin light chain kinase isoform 1	900	1-2.|5 X 28 AA approximate tandem repeats.				aorta smooth muscle tissue morphogenesis|muscle contraction	cytosol	actin binding|ATP binding|calmodulin binding|metal ion binding|myosin light chain kinase activity			ovary(6)|skin(2)|stomach(1)	9		Lung NSC(201;0.0496)		GBM - Glioblastoma multiforme(114;0.0736)		TCTTCCCCAGGAGGTCTCGGA	0.612													5	48					0	0	0.000602214	0	0
MRAS	22808	broad.mit.edu	37	3	138091750	138091750	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr3:138091750G>A	uc003esh.3	+	2	586	c.25G>A	c.(25-27)GAC>AAC	p.D9N	MRAS_uc011bmi.1_Intron|MRAS_uc003esi.3_Missense_Mutation_p.D9N|MRAS_uc011bmj.1_Intron	NM_012219	NP_036351	O14807	RASM_HUMAN	muscle RAS oncogene homolog precursor	9					actin cytoskeleton organization|muscle organ development|Ras protein signal transduction	intracellular|plasma membrane	GTP binding|GTP-dependent protein binding|GTPase activity			lung(2)|upper_aerodigestive_tract(1)|ovary(1)	4						CGTCCCCAGTGACAACCTCCC	0.527													35	215					0	0	0.000692331	0	0
TRIM42	287015	broad.mit.edu	37	3	140397075	140397075	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr3:140397075G>A	uc003eto.1	+	1	195	c.4G>A	c.(4-6)GAA>AAA	p.E2K		NM_152616	NP_689829	Q8IWZ5	TRI42_HUMAN	tripartite motif-containing 42	2						intracellular	zinc ion binding			lung(2)|skin(2)|upper_aerodigestive_tract(1)|breast(1)|central_nervous_system(1)	7						AGGCACCATGGAAACTGCTAT	0.512													20	99					0	0	0.000958276	0	0
SERPINI2	5276	broad.mit.edu	37	3	167159941	167159941	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr3:167159941G>A	uc003fer.1	-	8	1232	c.1174C>T	c.(1174-1176)CCT>TCT	p.P392S	SERPINI2_uc003fes.1_Missense_Mutation_p.P402S|SERPINI2_uc003fet.1_Missense_Mutation_p.P392S	NM_006217	NP_006208	O75830	SPI2_HUMAN	serpin peptidase inhibitor, clade I (pancpin),	392					cellular component movement|regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			skin(2)|urinary_tract(1)	3						TGGGTGTCAGGATTTGTCACT	0.323													7	28					0	0	0.000274275	0	0
TNIK	23043	broad.mit.edu	37	3	170786639	170786639	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr3:170786639G>A	uc003fhh.2	-	30	4042	c.3697C>T	c.(3697-3699)CAT>TAT	p.H1233Y	TNIK_uc003fhi.2_Missense_Mutation_p.H1178Y|TNIK_uc003fhj.2_Missense_Mutation_p.H1204Y|TNIK_uc003fhk.2_Missense_Mutation_p.H1225Y|TNIK_uc003fhl.2_Missense_Mutation_p.H1149Y|TNIK_uc003fhm.2_Missense_Mutation_p.H1170Y|TNIK_uc003fhn.2_Missense_Mutation_p.H1196Y|TNIK_uc003fho.2_Missense_Mutation_p.H1141Y|TNIK_uc003fhg.2_Missense_Mutation_p.H411Y|TNIK_uc003fhp.2_Missense_Mutation_p.H165Y	NM_015028	NP_055843	Q9UKE5	TNIK_HUMAN	TRAF2 and NCK interacting kinase isoform 1	1233	CNH.				actin cytoskeleton reorganization|activation of JNKK activity|protein autophosphorylation|regulation of dendrite morphogenesis|Wnt receptor signaling pathway	cytoskeleton|nucleus|recycling endosome	ATP binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			ovary(4)|large_intestine(1)	5	all_cancers(22;2.55e-19)|all_lung(20;2.22e-14)|Ovarian(172;0.00197)|Breast(254;0.122)		LUSC - Lung squamous cell carcinoma(14;3.57e-14)|Lung(28;9.39e-14)			GTACTTACATGAGATGGTATG	0.363													7	39					0	0	0.000157383	0	0
GHSR	2693	broad.mit.edu	37	3	172165933	172165933	+	Missense_Mutation	SNP	G	A	A	rs79053943	byFrequency	TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr3:172165933G>A	uc003fib.1	-	1	271	c.271C>T	c.(271-273)CTC>TTC	p.L91F	GHSR_uc011bpv.1_Missense_Mutation_p.L91F	NM_198407	NP_940799	Q92847	GHSR_HUMAN	growth hormone secretagogue receptor isoform 1a	91	Helical; Name=2; (Potential).				actin polymerization or depolymerization|adult feeding behavior|decidualization|growth hormone secretion|hormone-mediated signaling pathway|negative regulation of inflammatory response|negative regulation of interleukin-1 beta production|negative regulation of interleukin-6 biosynthetic process|negative regulation of tumor necrosis factor biosynthetic process|positive regulation of appetite|positive regulation of multicellular organism growth	cell surface|integral to membrane|membrane raft|neuron projection|plasma membrane	growth hormone secretagogue receptor activity|growth hormone-releasing hormone receptor activity			lung(3)|ovary(1)|central_nervous_system(1)	5	Ovarian(172;0.00143)|Breast(254;0.197)		Lung(28;3.93e-15)|LUSC - Lung squamous cell carcinoma(14;1.48e-14)|STAD - Stomach adenocarcinoma(35;0.235)			AGGAAGATGAGCAGATCGGAG	0.607													5	31					0	0	0.00198382	0	0
DGKG	1608	broad.mit.edu	37	3	186006576	186006576	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr3:186006576G>A	uc003fqa.2	-	6	1004	c.467C>T	c.(466-468)TCC>TTC	p.S156F	DGKG_uc003fqb.2_Missense_Mutation_p.S156F|DGKG_uc003fqc.2_Missense_Mutation_p.S156F|DGKG_uc011brx.1_Missense_Mutation_p.S156F	NM_001346	NP_001337	P49619	DGKG_HUMAN	diacylglycerol kinase gamma isoform 1	156	Poly-Ser.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	cytoplasm|plasma membrane	ATP binding|calcium ion binding|diacylglycerol kinase activity			breast(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5	all_cancers(143;3.26e-12)|Ovarian(172;0.0315)|Breast(254;0.247)		OV - Ovarian serous cystadenocarcinoma(80;1.93e-20)	GBM - Glioblastoma multiforme(93;0.0657)	Phosphatidylserine(DB00144)	TACCACTGGGGATTCCGAGCT	0.572													17	198					0	0	0.00278032	0	0
ATP13A4	84239	broad.mit.edu	37	3	193120522	193120522	+	Silent	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr3:193120522G>A	uc003ftd.2	-	30	3618	c.3510C>T	c.(3508-3510)ACC>ACT	p.T1170T	ATP13A4_uc010hzi.2_RNA	NM_032279	NP_115655	Q4VNC1	AT134_HUMAN	ATPase type 13A4	1170	Extracellular (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(2)	2	all_cancers(143;1.76e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;2.72e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;0.000109)		CAGAGTGGGAGGTTTGGTTTA	0.468													6	49					0	0	0.00116845	0	0
CPEB2	132864	broad.mit.edu	37	4	15009173	15009173	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr4:15009173G>A	uc003gni.1	+	2	683	c.596G>A	c.(595-597)AGA>AAA	p.R199K	CPEB2_uc003gnj.1_Missense_Mutation_p.R199K|CPEB2_uc003gnk.1_Missense_Mutation_p.R199K|CPEB2_uc003gnl.1_Missense_Mutation_p.R199K|CPEB2_uc003gnm.1_Missense_Mutation_p.R199K|CPEB2_uc003gnn.1_Missense_Mutation_p.R199K	NM_182485	NP_872291	Q7Z5Q1	CPEB2_HUMAN	cytoplasmic polyadenylation element binding	199					regulation of translation	cytoplasm	nucleotide binding|RNA binding			skin(1)	1						AATGTGTTCAGAACAGACAAC	0.368													7	49					0	0	0.00198382	0	0
LIMCH1	22998	broad.mit.edu	37	4	41683077	41683077	+	Splice_Site	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr4:41683077G>A	uc003gvu.3	+	20	2619	c.2565_splice	c.e20+1	p.M855_splice	LIMCH1_uc003gvv.3_Splice_Site_p.M855_splice|LIMCH1_uc003gvw.3_Splice_Site_p.M854_splice|LIMCH1_uc003gvx.3_Splice_Site_p.M867_splice|LIMCH1_uc003gwe.3_Splice_Site_p.M778_splice|LIMCH1_uc003gvy.3_Splice_Site_p.M683_splice|LIMCH1_uc003gwa.3_Splice_Site_p.M695_splice|LIMCH1_uc003gvz.3_Splice_Site_p.M1239_splice|LIMCH1_uc011byu.1_Splice_Site_p.M688_splice|LIMCH1_uc003gwc.3_Splice_Site_p.M700_splice|LIMCH1_uc003gwd.3_Splice_Site_p.M688_splice|LIMCH1_uc011byv.1_Splice_Site_p.M605_splice|LIMCH1_uc011byw.1_Splice_Site_p.M154_splice	NM_014988	NP_055803	Q9UPQ0	LIMC1_HUMAN	LIM and calponin homology domains 1 isoform a						actomyosin structure organization		actin binding|zinc ion binding			ovary(2)|pancreas(1)|skin(1)	4						TGGGACAATGGTGAGACCACA	0.408													8	103					0	0	0.000274275	0	0
GABRA2	2555	broad.mit.edu	37	4	46312230	46312230	+	Silent	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr4:46312230G>A	uc003gxc.3	-	5	1192	c.519C>T	c.(517-519)TTC>TTT	p.F173F	GABRA2_uc010igc.2_Silent_p.F173F|GABRA2_uc011bzc.1_Silent_p.F118F|GABRA2_uc003gxe.2_Silent_p.F173F	NM_001114175	NP_001107647	P47869	GBRA2_HUMAN	gamma-aminobutyric acid A receptor, alpha 2	173	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway|neurotransmitter transport|regulation of neurotransmitter levels	cell junction|chloride channel complex|integral to synaptic vesicle membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)|skin(2)	4					Alprazolam(DB00404)|Bromazepam(DB01558)|Diazepam(DB00829)|Ethchlorvynol(DB00189)|Fludiazepam(DB01567)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	CATCCATTGGGAAATCCTCCA	0.378													9	72					0	0	0.000673444	0	0
ATP10D	57205	broad.mit.edu	37	4	47525090	47525090	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr4:47525090C>T	uc003gxk.1	+	4	711	c.547C>T	c.(547-549)CTC>TTC	p.L183F	ATP10D_uc003gxj.3_Missense_Mutation_p.L183F	NM_020453	NP_065186	Q9P241	AT10D_HUMAN	ATPase, class V, type 10D	183	Cytoplasmic (Potential).				ATP biosynthetic process|cation transport	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(2)|pancreas(1)	3						CTTTATTCGCCTCTCCTGCAA	0.388													11	66					0	0	0.00136819	0	0
CORIN	10699	broad.mit.edu	37	4	47647134	47647134	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr4:47647134G>A	uc003gxm.2	-	14	2014	c.1921C>T	c.(1921-1923)CCA>TCA	p.P641S	CORIN_uc011bzf.1_Missense_Mutation_p.P502S|CORIN_uc011bzg.1_Missense_Mutation_p.P574S|CORIN_uc011bzh.1_Missense_Mutation_p.P604S	NM_006587	NP_006578	Q9Y5Q5	CORIN_HUMAN	corin	641	Extracellular (Potential).|LDL-receptor class A 6.				peptide hormone processing|regulation of systemic arterial blood pressure by atrial natriuretic peptide	integral to membrane|plasma membrane	scavenger receptor activity|serine-type endopeptidase activity|serine-type exopeptidase activity			ovary(1)|central_nervous_system(1)	2						GGGCAGTCTGGGAACCCATCG	0.388													13	91					0	0	0.000422831	0	0
SPATA18	132671	broad.mit.edu	37	4	52945947	52945947	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr4:52945947C>T	uc003gzl.2	+	9	1495	c.1217C>T	c.(1216-1218)TCA>TTA	p.S406L	SPATA18_uc010igl.1_RNA|SPATA18_uc011bzq.1_Missense_Mutation_p.S374L|SPATA18_uc003gzk.1_Missense_Mutation_p.S406L	NM_145263	NP_660306	Q8TC71	MIEAP_HUMAN	spermatogenesis associated 18 homolog	406					mitochondrial protein catabolic process|mitochondrion degradation by induced vacuole formation|response to DNA damage stimulus	mitochondrial outer membrane	protein binding			ovary(2)|skin(2)	4			GBM - Glioblastoma multiforme(4;1.77e-13)|LUSC - Lung squamous cell carcinoma(32;0.00204)			CCCAAGATTTCATTCCCTCCT	0.438													23	169					0	0	0.000720815	0	0
UGT2B7	7364	broad.mit.edu	37	4	69964304	69964304	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr4:69964304G>A	uc003heg.3	+	2	814	c.768G>A	c.(766-768)TGG>TGA	p.W256*	UGT2B7_uc010ihq.2_Nonsense_Mutation_p.W256*	NM_001074	NP_001065	P16662	UD2B7_HUMAN	UDP glucuronosyltransferase 2B7 precursor	256					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			ovary(1)|skin(1)	2						CTGACGTATGGCTTATTCGAA	0.408													7	90					0	0	0.000442599	0	0
UGT2B28	54490	broad.mit.edu	37	4	70155457	70155457	+	Silent	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr4:70155457G>A	uc003hej.2	+	4	1079	c.1077G>A	c.(1075-1077)CAG>CAA	p.Q359Q	UGT2B28_uc010ihr.2_Intron	NM_053039	NP_444267	Q9BY64	UDB28_HUMAN	UDP glucuronosyltransferase 2 family,	359					xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(1)	1					Flunitrazepam(DB01544)	GGATACCCCAGAATGACCTTC	0.353													8	21					0	0	0.000274275	0	0
PTPN13	5783	broad.mit.edu	37	4	87684145	87684145	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr4:87684145C>T	uc003hpz.2	+	24	4299	c.3819C>T	c.(3817-3819)ACC>ACT	p.T1273T	PTPN13_uc003hpy.2_Silent_p.T1273T|PTPN13_uc003hqa.2_Silent_p.T1254T|PTPN13_uc003hqb.2_Silent_p.T1082T	NM_080683	NP_542414	Q12923	PTN13_HUMAN	protein tyrosine phosphatase, non-receptor type	1273						cytoplasm|cytoskeleton|plasma membrane	protein binding|protein binding|protein tyrosine phosphatase activity			ovary(4)|breast(1)|kidney(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.242)		OV - Ovarian serous cystadenocarcinoma(123;0.00082)		GTGACCAAACCTGGCAGGAAT	0.478													5	47					0	0	0.00116845	0	0
HERC5	51191	broad.mit.edu	37	4	89415451	89415451	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr4:89415451G>A	uc003hrt.2	+	18	2566	c.2413G>A	c.(2413-2415)GAC>AAC	p.D805N	HERC5_uc011cdm.1_Missense_Mutation_p.D443N	NM_016323	NP_057407	Q9UII4	HERC5_HUMAN	hect domain and RLD 5	805	HECT.				innate immune response|ISG15-protein conjugation|negative regulation of type I interferon production|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|regulation of cyclin-dependent protein kinase activity|regulation of defense response to virus|response to virus	cytosol|perinuclear region of cytoplasm	ISG15 ligase activity|protein binding|ubiquitin-protein ligase activity			ovary(4)|lung(3)|skin(2)	9		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000209)		ATCATTGGAAGACTTGAAAGA	0.393													5	37					0	0	0.000602214	0	0
PDHA2	5161	broad.mit.edu	37	4	96761854	96761854	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr4:96761854G>A	uc003htr.3	+	1	616	c.553G>A	c.(553-555)GAT>AAT	p.D185N		NM_005390	NP_005381	P29803	ODPAT_HUMAN	pyruvate dehydrogenase E1 alpha 2 precursor	185					glycolysis	mitochondrial matrix	pyruvate dehydrogenase (acetyl-transferring) activity			central_nervous_system(1)	1		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;1.23e-06)	NADH(DB00157)	TAAAGGAAACGATGAGATCTG	0.483													10	56					0	0	0.000673444	0	0
C4orf21	55345	broad.mit.edu	37	4	113524759	113524759	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr4:113524759G>A	uc003iau.2	-	10	3108	c.2897C>T	c.(2896-2898)CCA>CTA	p.P966L	C4orf21_uc003iaw.2_Missense_Mutation_p.P966L	NM_018392	NP_060862	Q6ZU11	YD002_HUMAN	prematurely terminated mRNA decay factor-like	Error:Variant_position_missing_in_Q6ZU11_after_alignment						integral to membrane	zinc ion binding				0		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000676)		AGTGCTATCTGGAAACTGACT	0.413													7	80					0	0	0.000157383	0	0
ANKRD50	57182	broad.mit.edu	37	4	125590863	125590863	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr4:125590863G>A	uc003ifg.3	-	3	3835	c.3569C>T	c.(3568-3570)TCA>TTA	p.S1190L	ANKRD50_uc011cgo.1_Missense_Mutation_p.S1011L|ANKRD50_uc010inw.2_Missense_Mutation_p.S1190L	NM_020337	NP_065070	Q9ULJ7	ANR50_HUMAN	ankyrin repeat domain 50	1190	Ser-rich.									central_nervous_system(1)	1						TCTCAAAGATGAATTTTTTGA	0.383													21	83					0	0	0.00121646	0	0
PCDH18	54510	broad.mit.edu	37	4	138452705	138452705	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr4:138452705C>T	uc003ihe.3	-	1	925	c.538G>A	c.(538-540)GAT>AAT	p.D180N	PCDH18_uc003ihf.3_Missense_Mutation_p.D173N|PCDH18_uc011cgz.1_Intron|PCDH18_uc003ihg.3_5'UTR|PCDH18_uc011cha.1_Intron	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	180	Extracellular (Potential).|Cadherin 2.				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					TTAAAAAAATCATTGGCAGAG	0.483													9	54					0	0	0.000274275	0	0
KLKB1	3818	broad.mit.edu	37	4	187159439	187159439	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr4:187159439G>A	uc003iyy.2	+	6	589	c.518G>A	c.(517-519)GGA>GAA	p.G173E	KLKB1_uc011clc.1_5'UTR|KLKB1_uc011cld.1_Missense_Mutation_p.G135E	NM_000892	NP_000883	P03952	KLKB1_HUMAN	plasma kallikrein B1 precursor	173	Apple 2.				blood coagulation, intrinsic pathway|Factor XII activation|fibrinolysis|plasminogen activation|positive regulation of fibrinolysis	cytoplasm|extracellular space|plasma membrane	serine-type endopeptidase activity			ovary(1)	1		all_cancers(14;1.55e-52)|all_epithelial(14;7.69e-39)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.00664)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|all_neural(102;0.243)		OV - Ovarian serous cystadenocarcinoma(60;1.29e-10)|BRCA - Breast invasive adenocarcinoma(30;3.8e-05)|GBM - Glioblastoma multiforme(59;0.000131)|STAD - Stomach adenocarcinoma(60;0.000292)|LUSC - Lung squamous cell carcinoma(40;0.00241)|READ - Rectum adenocarcinoma(43;0.168)		TACAGTCCCGGAGGAACACCT	0.458													6	51					0	0	0.000157383	0	0
PLEKHG4B	153478	broad.mit.edu	37	5	169640	169640	+	Missense_Mutation	SNP	A	C	C			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr5:169640A>C	uc003jak.2	+	12	2644	c.2594A>C	c.(2593-2595)CAC>CCC	p.H865P		NM_052909	NP_443141	Q96PX9	PKH4B_HUMAN	pleckstrin homology domain containing, family G	865	DH.				regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			skin(2)	2			all cancers(22;0.0253)|Lung(60;0.113)	Kidney(1;0.119)		CACCAGCAGCACTTCCTCCGG	0.602													7	94					0	0	0.00198382	0	0
PLEKHG4B	153478	broad.mit.edu	37	5	171433	171434	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr5:171433_171434GG>AA	uc003jak.2	+	14	2906_2907	c.2856_2857GG>AA	c.(2854-2859)AAGGAG>AAAAAG	p.E953K		NM_052909	NP_443141	Q96PX9	PKH4B_HUMAN	pleckstrin homology domain containing, family G	953	DH.				regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			skin(2)	2			all cancers(22;0.0253)|Lung(60;0.113)	Kidney(1;0.119)		ACCTGCTCAAGGAGGCCAGCTG	0.673													5	25					0	0	6.4e-05	0	0
SLC12A7	10723	broad.mit.edu	37	5	1060544	1060544	+	Missense_Mutation	SNP	A	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr5:1060544A>T	uc003jbu.2	-	21	2828	c.2762T>A	c.(2761-2763)TTC>TAC	p.F921Y		NM_006598	NP_006589	Q9Y666	S12A7_HUMAN	solute carrier family 12 (potassium/chloride	921	Cytoplasmic (Potential).				potassium ion transport|sodium ion transport	integral to plasma membrane	potassium:chloride symporter activity			skin(2)|large_intestine(1)|ovary(1)	4	Lung NSC(6;2.47e-13)|all_lung(6;1.67e-12)|all_epithelial(6;5.44e-09)		Epithelial(17;0.000497)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|all cancers(22;0.00241)|Lung(60;0.165)		Potassium Chloride(DB00761)	CTCGTAGGTGAAAGCAGATAT	0.552													7	58					0	0	0.000157383	0	0
ROPN1L	83853	broad.mit.edu	37	5	10461368	10461368	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr5:10461368C>T	uc003jex.3	+	4	761	c.490C>T	c.(490-492)CCC>TCC	p.P164S		NM_031916	NP_114122	Q96C74	ROP1L_HUMAN	ropporin 1-like	164					ciliary or flagellar motility|signal transduction	cytoplasm|motile cilium	cAMP-dependent protein kinase regulator activity|protein binding			ovary(1)	1						CGCTCGCATCCCCTTCAAGAC	0.567													13	80					0	0	0.00185496	0	0
DNAH5	1767	broad.mit.edu	37	5	13762921	13762921	+	Silent	SNP	T	C	C			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr5:13762921T>C	uc003jfd.2	-	60	10233	c.10191A>G	c.(10189-10191)AAA>AAG	p.K3397K	DNAH5_uc003jfc.2_5'UTR	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3397	Stalk (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CACATACGCGTTTAGCAGTTT	0.398									Kartagener_syndrome				5	73					0	0	0.00198382	0	0
PRDM9	56979	broad.mit.edu	37	5	23518034	23518034	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr5:23518034C>T	uc003jgo.2	+	5	528	c.346C>T	c.(346-348)CAG>TAG	p.Q116*		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	116					meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						GCGTAAACACCAGAAGGTAAG	0.408										HNSCC(3;0.000094)			17	109					0	0	0.00074312	0	0
ADAMTS12	81792	broad.mit.edu	37	5	33751639	33751639	+	Silent	SNP	T	C	C			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr5:33751639T>C	uc003jia.1	-	3	667	c.504A>G	c.(502-504)CAA>CAG	p.Q168Q	ADAMTS12_uc010iuq.1_Silent_p.Q168Q|ADAMTS12_uc003jib.1_Silent_p.Q168Q	NM_030955	NP_112217	P58397	ATS12_HUMAN	ADAM metallopeptidase with thrombospondin type 1	168					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)	9						CATGTGGTAGTTGGAAAAATC	0.383										HNSCC(64;0.19)			8	88					0	0	0.000157383	0	0
UGT3A2	167127	broad.mit.edu	37	5	36049295	36049295	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr5:36049295G>A	uc003jjz.1	-	4	632	c.539C>T	c.(538-540)CCC>CTC	p.P180L	UGT3A2_uc011cos.1_Missense_Mutation_p.P146L|UGT3A2_uc011cot.1_Intron	NM_174914	NP_777574	Q3SY77	UD3A2_HUMAN	UDP glycosyltransferase 3 family, polypeptide A2	180	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6	all_lung(31;0.000179)		Lung(74;0.111)|Epithelial(62;0.113)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			ATAAGACAAGGGGATTGGTAG	0.458													9	34					0	0	0.000274275	0	0
PTCD2	79810	broad.mit.edu	37	5	71618054	71618054	+	Silent	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr5:71618054G>A	uc003kcb.2	+	2	193	c.183G>A	c.(181-183)AAG>AAA	p.K61K	MRPS27_uc003kca.3_5'Flank|MRPS27_uc003kbz.3_5'Flank|MRPS27_uc011cse.1_5'Flank|MRPS27_uc010iza.2_5'Flank|PTCD2_uc011csf.1_5'UTR|PTCD2_uc003kcc.2_5'UTR|PTCD2_uc011csg.1_5'UTR|PTCD2_uc011csh.1_Silent_p.K61K|PTCD2_uc003kcd.2_RNA	NM_024754	NP_079030	Q8WV60	PTCD2_HUMAN	pentatricopeptide repeat domain 2	61											0		Lung NSC(167;0.00237)|Ovarian(174;0.0175)|Prostate(461;0.141)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;1.73e-53)		TTCAACAAAAGAAAGTGGCTG	0.284													27	182					0	0	0.00178596	0	0
GPR98	84059	broad.mit.edu	37	5	89949582	89949582	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr5:89949582C>T	uc003kju.2	+	20	4287	c.4191C>T	c.(4189-4191)TCC>TCT	p.S1397S	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	1397	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		TGACACTTTCCCTTCATTATA	0.373													5	24					0	0	0.000602214	0	0
GIN1	54826	broad.mit.edu	37	5	102432371	102432371	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr5:102432371G>A	uc003koa.1	-	7	1250	c.1168C>T	c.(1168-1170)CCT>TCT	p.P390S	GIN1_uc003kob.1_Missense_Mutation_p.P243S|GIN1_uc003koc.1_Intron	NM_017676	NP_060146	Q9NXP7	GIN1_HUMAN	zinc finger, H2C2 domain containing	390					DNA integration		DNA binding			ovary(1)|skin(1)	2		all_cancers(142;3.23e-07)|all_epithelial(76;3.64e-10)|Prostate(80;0.00914)|Ovarian(225;0.0139)|Lung NSC(167;0.0212)|Colorectal(57;0.0249)|all_lung(232;0.0283)		Epithelial(69;3.57e-14)|COAD - Colon adenocarcinoma(37;0.00794)		ATGACACAAGGACCAACCCAT	0.393													19	145					0	0	0.000586117	0	0
ALDH7A1	501	broad.mit.edu	37	5	125906538	125906538	+	Missense_Mutation	SNP	C	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr5:125906538C>A	uc003ktx.2	-	8	901	c.709G>T	c.(709-711)GTT>TTT	p.V237F	ALDH7A1_uc003kty.2_RNA|ALDH7A1_uc011cxa.1_Missense_Mutation_p.V264F|ALDH7A1_uc003ktz.2_Missense_Mutation_p.V264F	NM_001182	NP_001173	P49419	AL7A1_HUMAN	aldehyde dehydrogenase 7 family, member A1	237					cellular aldehyde metabolic process|lysine catabolic process|sensory perception of sound	cytosol|mitochondrial matrix|nucleus	aldehyde dehydrogenase (NAD) activity|betaine-aldehyde dehydrogenase activity|L-aminoadipate-semialdehyde dehydrogenase activity			kidney(2)|ovary(1)	3		all_cancers(142;0.24)|Prostate(80;0.081)	KIRC - Kidney renal clear cell carcinoma(527;0.0584)|Kidney(363;0.0934)	Epithelial(69;0.0417)|OV - Ovarian serous cystadenocarcinoma(64;0.068)|all cancers(49;0.109)	NADH(DB00157)|Pyridoxine(DB00165)	TCCTCCAGAACCTTGGCTATT	0.408													18	147					1.00905e-13	4.01842e-13	0.00121646	1	0
FSTL4	23105	broad.mit.edu	37	5	132648406	132648406	+	Nonsense_Mutation	SNP	G	A	A	rs148048628		TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr5:132648406G>A	uc003kyn.1	-	6	885	c.667C>T	c.(667-669)CGA>TGA	p.R223*		NM_015082	NP_055897	Q6MZW2	FSTL4_HUMAN	follistatin-like 4 precursor	223						extracellular region	calcium ion binding			central_nervous_system(1)|skin(1)	2		all_cancers(142;0.244)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			TCGTCAAATCGGAGGAGGTCA	0.527													5	39					0	0	0.00116845	0	0
BRD8	10902	broad.mit.edu	37	5	137501622	137501622	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr5:137501622C>T	uc003lcf.1	-	11	1228	c.1173G>A	c.(1171-1173)AAG>AAA	p.K391K	BRD8_uc003lcc.1_RNA|BRD8_uc011cyl.1_Silent_p.K170K|BRD8_uc003lcg.2_Silent_p.K464K|BRD8_uc003lci.2_Silent_p.K394K|BRD8_uc003lch.2_Silent_p.K285K|BRD8_uc011cym.1_Silent_p.K375K|BRD8_uc010jer.1_Silent_p.K360K|BRD8_uc011cyn.1_Silent_p.K350K	NM_139199	NP_631938	Q9H0E9	BRD8_HUMAN	bromodomain containing 8 isoform 2	391					cell surface receptor linked signaling pathway|histone H2A acetylation|histone H4 acetylation|regulation of growth|regulation of transcription from RNA polymerase II promoter	mitochondrion|NuA4 histone acetyltransferase complex	sequence-specific DNA binding transcription factor activity|thyroid hormone receptor activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0109)			CTAATTCTTCCTTCCCATCTA	0.438													8	72					0	0	0.000157383	0	0
CXXC5	51523	broad.mit.edu	37	5	139060581	139060581	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr5:139060581G>A	uc010jfg.1	+	2	763	c.473G>A	c.(472-474)GGA>GAA	p.G158E	CXXC5_uc003let.2_Missense_Mutation_p.G158E	NM_016463	NP_057547	Q7LFL8	CXXC5_HUMAN	CXXC finger 5	158					positive regulation of I-kappaB kinase/NF-kappaB cascade	cytoplasm|nucleus	DNA binding|signal transducer activity|zinc ion binding			central_nervous_system(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCAGCCGAGGGACAGCTGACG	0.632													9	63					0	0	0.000274275	0	0
HTR4	3360	broad.mit.edu	37	5	147889130	147889130	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr5:147889130G>A	uc003lpn.2	-	6	1129	c.965C>T	c.(964-966)GCC>GTC	p.A322V	HTR4_uc010jgu.1_RNA|HTR4_uc003lpi.1_Missense_Mutation_p.A322V|HTR4_uc003lpj.1_Missense_Mutation_p.A322V|HTR4_uc003lpk.2_Missense_Mutation_p.A322V|HTR4_uc011dby.1_Missense_Mutation_p.A322V|HTR4_uc003lpl.2_Missense_Mutation_p.A336V|HTR4_uc003lpm.2_Missense_Mutation_p.A322V|HTR4_uc010jgv.2_RNA|HTR4_uc003lpo.1_Missense_Mutation_p.A322V	NM_000870	NP_000861	Q13639	5HT4R_HUMAN	serotonin 5-HT4 receptor isoform b	322	Cytoplasmic (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|positive regulation of cell proliferation	endosome|integral to plasma membrane|membrane fraction	serotonin receptor activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)		Cisapride(DB00604)|Rizatriptan(DB00953)|Tegaserod(DB01079)|Zolmitriptan(DB00315)	GATGAGGAAGGCACGTCTAAA	0.502													9	35					0	0	0.000274275	0	0
HAVCR1	26762	broad.mit.edu	37	5	156459882	156459882	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr5:156459882C>T	uc010jij.1	-	8	1154	c.969G>A	c.(967-969)AAG>AAA	p.K323K	HAVCR1_uc011ddl.1_Intron|HAVCR1_uc003lwi.2_Silent_p.K323K	NM_001099414	NP_001092884	Q96D42	HAVR1_HUMAN	hepatitis A virus cellular receptor 1	318	Cytoplasmic (Potential).				interspecies interaction between organisms	integral to membrane	receptor activity			ovary(1)|skin(1)	2	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.0999)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			GTTGAACCTCCTTTTTGAAGA	0.338													40	221					0	0	0.000781405	0	0
UIMC1	51720	broad.mit.edu	37	5	176395770	176395770	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr5:176395770G>A	uc011dfp.1	-	6	1153	c.986C>T	c.(985-987)CCT>CTT	p.P329L	UIMC1_uc003mfc.1_Missense_Mutation_p.P206L|UIMC1_uc003mfd.1_Intron|UIMC1_uc003mfg.1_Intron|UIMC1_uc003mff.1_Intron	NM_016290	NP_057374	Q96RL1	UIMC1_HUMAN	ubiquitin interaction motif containing 1	329	AIR.				double-strand break repair|G2/M transition DNA damage checkpoint|histone H2A K63-linked deubiquitination|negative regulation of transcription, DNA-dependent|positive regulation of DNA repair|response to ionizing radiation|transcription, DNA-dependent	BRCA1-A complex	histone binding|K63-linked polyubiquitin binding			ovary(3)|skin(1)	4	all_cancers(89;7.96e-05)|Renal(175;0.000269)|Lung NSC(126;0.00476)|all_lung(126;0.00806)	Medulloblastoma(196;0.0145)|all_neural(177;0.0325)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GATCAGAGAAGGAGGTCTAGG	0.448													18	81					0	0	0.000566183	0	0
DBN1	1627	broad.mit.edu	37	5	176886132	176886132	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr5:176886132G>A	uc003mgy.2	-	11	1265	c.1093C>T	c.(1093-1095)CCA>TCA	p.P365S	DBN1_uc011dga.1_Missense_Mutation_p.P97S|DBN1_uc003mgx.2_Missense_Mutation_p.P367S|DBN1_uc010jkn.1_Missense_Mutation_p.P315S|DBN1_uc003mgz.1_Missense_Mutation_p.P348S	NM_004395	NP_004386	Q16643	DREB_HUMAN	drebrin 1 isoform a	365					actin filament organization|regulation of dendrite development|regulation of neuronal synaptic plasticity	actomyosin|cytoplasm|dendrite	actin binding|profilin binding			breast(3)|ovary(1)|lung(1)|skin(1)	6	all_cancers(89;2.17e-05)|Renal(175;0.000269)|Lung NSC(126;0.0014)|all_lung(126;0.0025)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GGCAGTGGTGGAGGCTGCGAG	0.677													10	70					0	0	0.000978159	0	0
BTNL8	79908	broad.mit.edu	37	5	180335744	180335744	+	Missense_Mutation	SNP	G	A	A	rs139672035		TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr5:180335744G>A	uc003mmp.2	+	2	442	c.208G>A	c.(208-210)GGG>AGG	p.G70R	BTNL8_uc003mmq.2_Missense_Mutation_p.G70R|BTNL8_uc011dhg.1_Intron|BTNL8_uc010jll.2_Missense_Mutation_p.G70R|BTNL8_uc010jlm.2_Intron|BTNL8_uc011dhh.1_5'Flank	NM_001040462	NP_001035552	Q6UX41	BTNL8_HUMAN	butyrophilin-like 8 isoform 2 precursor	70	Extracellular (Potential).|Ig-like V-type 1.					integral to membrane				upper_aerodigestive_tract(1)|skin(1)	2	all_cancers(89;3.37e-05)|all_epithelial(37;3.77e-06)|Renal(175;0.000159)|Lung NSC(126;0.00211)|all_lung(126;0.00371)|Breast(19;0.114)	all_cancers(40;0.0801)|Medulloblastoma(196;0.0392)|all_neural(177;0.0529)|all_hematologic(541;0.191)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CTACAGGGACGGGAAGGACCA	0.532													19	158					0	0	0.00152264	0	0
RREB1	6239	broad.mit.edu	37	6	7248820	7248820	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr6:7248820C>T	uc003mxc.2	+	12	5073	c.4683C>T	c.(4681-4683)ATC>ATT	p.I1561I	RREB1_uc003mxb.2_Silent_p.I1616I|RREB1_uc010jnx.2_Silent_p.I1350I	NM_001003698	NP_001003698	Q92766	RREB1_HUMAN	ras responsive element binding protein 1 isoform	1561	C2H2-type 15.				multicellular organismal development|positive regulation of transcription, DNA-dependent|Ras protein signal transduction|transcription from RNA polymerase II promoter	cytoplasm|nuclear speck	DNA binding|zinc ion binding			ovary(4)|large_intestine(2)|pancreas(2)|skin(2)|breast(1)	11	Ovarian(93;0.0398)	all_hematologic(90;0.0384)|Prostate(151;0.191)				ACCAGCGGATCCACCAGAAAG	0.557													5	30					0	0	0.000602214	0	0
HIVEP1	3096	broad.mit.edu	37	6	12121818	12121818	+	Missense_Mutation	SNP	A	G	G			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr6:12121818A>G	uc003nac.2	+	4	1969	c.1790A>G	c.(1789-1791)CAG>CGG	p.Q597R	HIVEP1_uc011diq.1_RNA	NM_002114	NP_002105	P15822	ZEP1_HUMAN	human immunodeficiency virus type I enhancer	597					transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	Breast(50;0.0639)|Ovarian(93;0.0816)	all_hematologic(90;0.117)				AAGGACCTTCAGGTGACAAAC	0.507													10	77					0	0	0.00185496	0	0
EDN1	1906	broad.mit.edu	37	6	12296257	12296257	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr6:12296257C>T	uc003nae.3	+	5	930	c.596C>T	c.(595-597)CCC>CTC	p.P199L	EDN1_uc003nad.2_3'UTR|EDN1_uc003naf.3_Missense_Mutation_p.P198L	NM_001955	NP_001946	P05305	EDN1_HUMAN	endothelin 1 precursor	199					artery smooth muscle contraction|calcium-mediated signaling|leukocyte activation|negative regulation of blood coagulation|negative regulation of cellular protein metabolic process|negative regulation of nitric-oxide synthase biosynthetic process|negative regulation of transcription from RNA polymerase II promoter|nitric oxide transport|peptide hormone secretion|phosphatidylinositol 3-kinase cascade|positive regulation of cardiac muscle hypertrophy|positive regulation of cell size|positive regulation of endothelial cell migration|positive regulation of heart rate|positive regulation of hormone secretion|positive regulation of JUN kinase activity|positive regulation of mitosis|positive regulation of nitric oxide biosynthetic process|positive regulation of prostaglandin-endoperoxide synthase activity|positive regulation of sarcomere organization|positive regulation of smooth muscle cell proliferation|prostaglandin biosynthetic process|protein kinase C deactivation|regulation of systemic arterial blood pressure by endothelin|regulation of vasoconstriction|vein smooth muscle contraction	cytoplasm|extracellular space	cytokine activity|endothelin A receptor binding|endothelin B receptor binding|hormone activity			skin(1)	1	all_cancers(95;0.241)|Breast(50;0.0266)|Ovarian(93;0.12)	all_hematologic(90;0.117)				AAAGGCAAGCCCTCCAGAGAG	0.488													15	158					0	0	0.000422831	0	0
HIST1H2BB	3018	broad.mit.edu	37	6	26043734	26043734	+	Missense_Mutation	SNP	G	C	C			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr6:26043734G>C	uc003nfu.2	-	1	152	c.152C>G	c.(151-153)CCC>CGC	p.P51R	HIST1H3C_uc003nfv.2_5'Flank	NM_021062	NP_066406	P33778	H2B1B_HUMAN	histone cluster 1, H2bb	51					nucleosome assembly	nucleosome|nucleus	DNA binding				0						GCCGGTGTCGGGGTGGACCTG	0.547													4	192					0	0	0.00024832	0	0
NKAPL	222698	broad.mit.edu	37	6	28227579	28227579	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr6:28227579C>T	uc003nkt.2	+	1	482	c.430C>T	c.(430-432)CCT>TCT	p.P144S	ZKSCAN4_uc011dlb.1_5'Flank	NM_001007531	NP_001007532	Q5M9Q1	NKAPL_HUMAN	NFKB activating protein-like	144										upper_aerodigestive_tract(1)|ovary(1)	2						TCCAAAGTTCCCTCAGCTAGA	0.517													19	145					0	0	0.00152264	0	0
ZNF323	64288	broad.mit.edu	37	6	28294165	28294165	+	Silent	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr6:28294165G>A	uc003nla.2	-	4	1399	c.999C>T	c.(997-999)CTC>CTT	p.L333L	ZNF323_uc003nld.2_Silent_p.L333L|ZNF323_uc010jra.2_Silent_p.L333L|ZNF323_uc003nlb.2_Silent_p.L174L|ZNF323_uc010jrb.2_Silent_p.L174L|ZNF323_uc003nlc.2_Silent_p.L333L	NM_001135216	NP_001128688	Q96LW9	ZN323_HUMAN	zinc finger protein 323	333	C2H2-type 4.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						ATGAGCTGAGGAGGAAAGCCT	0.502													20	184					0	0	0.00229938	0	0
OR2W1	26692	broad.mit.edu	37	6	29012269	29012269	+	Silent	SNP	C	T	T	rs144276666		TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr6:29012269C>T	uc003nlw.2	-	1	684	c.684G>A	c.(682-684)ACG>ACA	p.T228T		NM_030903	NP_112165	Q9Y3N9	OR2W1_HUMAN	olfactory receptor, family 2, subfamily W,	228	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.T228T(1)		ovary(2)|skin(1)	3						CTTTTGACTTCGTTCTCAGCA	0.393													11	93					0	0	0.00136819	0	0
OR5V1	81696	broad.mit.edu	37	6	29323829	29323829	+	Silent	SNP	C	T	T	rs140570809		TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr6:29323829C>T	uc011dlo.1	-	1	226	c.144G>A	c.(142-144)ACG>ACA	p.T48T		NM_030876	NP_110503	Q9UGF6	OR5V1_HUMAN	olfactory receptor, family 5, subfamily V,	48	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|kidney(1)	4						CAGTCACAGTCGTCAAGATAA	0.388													15	169					0	0	0.00121646	0	0
GTF2H4	2968	broad.mit.edu	37	6	30880155	30880155	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr6:30880155C>T	uc003nsa.1	+	11	1216	c.1009C>T	c.(1009-1011)CGG>TGG	p.R337W	GTF2H4_uc003nsb.1_Missense_Mutation_p.R175W|GTF2H4_uc011dmw.1_Missense_Mutation_p.R343W|VARS2_uc003nsc.1_5'Flank|VARS2_uc003nsd.2_5'Flank|VARS2_uc011dmx.1_5'Flank|VARS2_uc011dmy.1_5'Flank|VARS2_uc011dmz.1_5'Flank|VARS2_uc011dna.1_5'Flank|VARS2_uc011dnb.1_5'Flank|VARS2_uc011dnc.1_5'Flank	NM_001517	NP_001508	Q92759	TF2H4_HUMAN	general transcription factor IIH, polypeptide 4,	337					mRNA capping|nucleotide-excision repair, DNA damage removal|positive regulation of viral transcription|protein phosphorylation|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase I promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	holo TFIIH complex	protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)|breast(1)	3						GATGCTCTATCGGTTCCCCAA	0.597								NER					9	80					0	0	0.000978159	0	0
BAT2	7916	broad.mit.edu	37	6	31596977	31596977	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr6:31596977C>T	uc003nvb.3	+	13	2071	c.1822C>T	c.(1822-1824)CCT>TCT	p.P608S	BAT2_uc011dnv.1_Intron|BAT2_uc003nvc.3_Missense_Mutation_p.P608S	NM_080686	NP_542417	P48634	PRC2A_HUMAN	HLA-B associated transcript-2	608	4 X 57 AA type A repeats.					cytoplasm|nucleus	protein binding				0						GGTTCCTCCTCCTACCACACC	0.537													7	83					0	0	0.00198382	0	0
C6orf27	80737	broad.mit.edu	37	6	31742303	31742303	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr6:31742303C>T	uc011dog.1	-	5	949	c.711G>A	c.(709-711)CCG>CCA	p.P237P	C6orf27_uc003nxd.2_5'UTR|C6orf27_uc011doh.1_RNA	NM_025258	NP_079534	Q9Y334	G7C_HUMAN	G7c protein precursor	237						extracellular region				ovary(3)	3						CTGGAGGTTTCGGGGGATGAG	0.542													15	157					0	0	0.000566183	0	0
HSPA1L	3305	broad.mit.edu	37	6	31778184	31778184	+	Silent	SNP	C	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr6:31778184C>A	uc003nxh.2	-	2	1749	c.1566G>T	c.(1564-1566)CTG>CTT	p.L522L	HSPA1L_uc010jte.2_Silent_p.L522L	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	522					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						TCTCAGCATCCAGAACCATGC	0.473													13	768					0.00244969	0.00955006	0.00244969	1	0
HLA-DOA	3111	broad.mit.edu	37	6	32974902	32974902	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr6:32974902C>T	uc003ocr.2	-	4	780	c.704G>A	c.(703-705)GGC>GAC	p.G235D	HLA-DOA_uc010juj.2_Intron|HLA-DOA_uc010jui.2_3'UTR	NM_002119	NP_002110	P06340	DOA_HUMAN	major histocompatibility complex, class II, DO	235	Helical; (Potential).				antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|interferon-gamma-mediated signaling pathway|T cell costimulation|T cell receptor signaling pathway	endosome membrane|integral to membrane|lysosomal membrane|MHC class II protein complex	MHC class II receptor activity				0						GAGGACGGTGCCCACGAGGAA	0.627													8	68					0	0	0.000274275	0	0
ANKS1A	23294	broad.mit.edu	37	6	35046409	35046409	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr6:35046409C>T	uc003ojx.3	+	14	2401	c.2259C>T	c.(2257-2259)CTC>CTT	p.L753L	ANKS1A_uc011dss.1_Intron|ANKS1A_uc011dst.1_Silent_p.L293L|ANKS1A_uc010jvp.1_Silent_p.L127L	NM_015245	NP_056060	Q92625	ANS1A_HUMAN	ankyrin repeat and sterile alpha motif domain	753	SAM 1.					cytoplasm	protein binding			ovary(3)|upper_aerodigestive_tract(1)	4						GGAAGCTGCTCCAGGCGGCAC	0.647													7	65					0	0	0.000442599	0	0
BRPF3	27154	broad.mit.edu	37	6	36168987	36168987	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr6:36168987C>T	uc003olv.3	+	2	1112	c.888C>T	c.(886-888)ATC>ATT	p.I296I	BRPF3_uc010jwb.2_Silent_p.I296I|BRPF3_uc011dtj.1_RNA|BRPF3_uc010jwc.2_RNA|BRPF3_uc011dtk.1_Silent_p.I296I	NM_015695	NP_056510	Q9ULD4	BRPF3_HUMAN	bromodomain and PHD finger containing, 3	296					histone H3 acetylation|platelet activation|platelet degranulation	cytosol|extracellular region|MOZ/MORF histone acetyltransferase complex	protein binding|zinc ion binding			ovary(1)|skin(1)	2						CCATCTGGATCCCTGAAGTCT	0.547													8	61					0	0	0.000673444	0	0
PGC	5225	broad.mit.edu	37	6	41704688	41704688	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr6:41704688C>T	uc003ora.1	-	9	1118	c.1069G>A	c.(1069-1071)GGC>AGC	p.G357S	TFEB_uc003oqs.1_5'Flank|TFEB_uc003oqt.1_5'Flank|TFEB_uc003oqu.1_5'Flank|TFEB_uc010jxq.1_5'Flank	NM_002630	NP_002621	P20142	PEPC_HUMAN	progastricsin (pepsinogen C) precursor	357					digestion|proteolysis	extracellular space	aspartic-type endopeptidase activity				0	Ovarian(28;0.0355)|Colorectal(47;0.121)		Epithelial(12;0.000132)|STAD - Stomach adenocarcinoma(11;0.000204)|Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00507)			AGGGGCTGGCCGTTCTGGGAG	0.512													8	52					0	0	0.000442599	0	0
TTBK1	84630	broad.mit.edu	37	6	43220587	43220587	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr6:43220587C>T	uc003ouq.1	+	3	498	c.219C>T	c.(217-219)GTC>GTT	p.V73V		NM_032538	NP_115927	Q5TCY1	TTBK1_HUMAN	tau tubulin kinase 1	73	Protein kinase.					cell junction|cytoplasm|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			lung(4)|ovary(2)|skin(2)|upper_aerodigestive_tract(1)	9			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0125)|OV - Ovarian serous cystadenocarcinoma(102;0.0399)			CCAAGCAGGTCCTCAAGATGG	0.617													9	56					0	0	0.000673444	0	0
FBXO9	26268	broad.mit.edu	37	6	52957291	52957292	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr6:52957291_52957292CC>TT	uc003pbo.2	+	8	799_800	c.748_749CC>TT	c.(748-750)CCG>TTG	p.P250L	FBXO9_uc003pbk.2_Missense_Mutation_p.P206L|FBXO9_uc003pbl.2_Missense_Mutation_p.P240L|FBXO9_uc003pbm.2_Missense_Mutation_p.P130L|FBXO9_uc003pbn.2_Missense_Mutation_p.P130L	NM_012347	NP_036479	Q9UK97	FBX9_HUMAN	F-box only protein 9 isoform 1	250						ubiquitin ligase complex	ubiquitin-protein ligase activity			pancreas(1)	1	Lung NSC(77;0.103)					TAAACTTGTTCCGTACACGTCC	0.421													12	125					0	0	6.4e-05	0	0
HCRTR2	3062	broad.mit.edu	37	6	55039521	55039521	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr6:55039521G>A	uc003pcl.2	+	1	451	c.136G>A	c.(136-138)GAA>AAA	p.E46K	HCRTR2_uc010jzv.2_RNA|HCRTR2_uc010jzu.1_RNA	NM_001526	NP_001517	O43614	OX2R_HUMAN	orexin receptor 2	46	Extracellular (Potential).				feeding behavior	integral to plasma membrane	neuropeptide receptor activity			ovary(2)|lung(2)|upper_aerodigestive_tract(1)|breast(1)	6	Lung NSC(77;0.107)|Renal(3;0.122)		LUSC - Lung squamous cell carcinoma(124;0.23)			CCTGTGGAGGGAATACCTGCA	0.537													12	65					0	0	0.00136819	0	0
DST	667	broad.mit.edu	37	6	56494125	56494125	+	Silent	SNP	A	G	G			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr6:56494125A>G	uc003pdf.2	-	31	4327	c.4299T>C	c.(4297-4299)CTT>CTC	p.L1433L	DST_uc003pcz.3_Silent_p.L1255L|DST_uc011dxj.1_Silent_p.L1284L|DST_uc011dxk.1_Silent_p.L1295L|DST_uc003pcy.3_Silent_p.L929L|DST_uc003pdb.2_Silent_p.L929L|DST_uc003pdc.3_Silent_p.L929L|DST_uc003pdd.3_Silent_p.L929L	NM_001144769	NP_001138241	Q03001	DYST_HUMAN	dystonin isoform 2	1255					cell adhesion|cell cycle arrest|cell motility|hemidesmosome assembly|integrin-mediated signaling pathway|intermediate filament cytoskeleton organization|maintenance of cell polarity|microtubule cytoskeleton organization|response to wounding	actin cytoskeleton|axon|axon part|basement membrane|cell cortex|cell leading edge|cytoplasmic membrane-bounded vesicle|endoplasmic reticulum membrane|hemidesmosome|hemidesmosome|integral to membrane|intermediate filament|intermediate filament cytoskeleton|microtubule cytoskeleton|microtubule plus end|nuclear envelope|sarcomere|Z disc	actin binding|calcium ion binding|integrin binding|microtubule plus-end binding|protein binding|protein C-terminus binding|protein homodimerization activity			ovary(7)|central_nervous_system(6)|upper_aerodigestive_tract(1)	14	Lung NSC(77;0.103)		LUSC - Lung squamous cell carcinoma(124;0.0485)|Lung(124;0.0956)			AGTCAAAATCAAGGTCCCGTT	0.373													3	100					0	0	6.4e-05	0	0
BAI3	577	broad.mit.edu	37	6	69703712	69703712	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr6:69703712C>T	uc003pev.3	+	11	2235	c.1787C>T	c.(1786-1788)TCC>TTC	p.S596F	BAI3_uc010kak.2_Missense_Mutation_p.S596F	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	596	Extracellular (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				GATGGAATGTCCCAGGTGACC	0.438													32	201					0	0	0.00058488	0	0
LCA5	167691	broad.mit.edu	37	6	80223044	80223044	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr6:80223044G>A	uc003pix.2	-	3	1040	c.605C>T	c.(604-606)TCC>TTC	p.S202F	LCA5_uc003piy.2_Missense_Mutation_p.S202F|LCA5_uc011dyq.1_RNA|LCA5_uc011dyr.1_Missense_Mutation_p.S202F	NM_001122769	NP_001116241	Q86VQ0	LCA5_HUMAN	Leber congenital amaurosis 5	202	Potential.				protein transport	cilium axoneme|microtubule basal body	protein binding				0		all_cancers(76;3.32e-05)|Acute lymphoblastic leukemia(125;1.1e-05)|all_hematologic(105;0.00117)|all_epithelial(107;0.0176)		BRCA - Breast invasive adenocarcinoma(397;0.0657)		TTTCTGTAAGGAAAATTTTGT	0.378													12	69					0	0	0.000978159	0	0
PGM3	5238	broad.mit.edu	37	6	83892682	83892682	+	Missense_Mutation	SNP	G	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr6:83892682G>T	uc003pjv.2	-	5	513	c.473C>A	c.(472-474)ACA>AAA	p.T158K	PGM3_uc003pjw.2_Missense_Mutation_p.T77K|PGM3_uc011dyz.1_Missense_Mutation_p.T186K	NM_015599	NP_056414	O95394	AGM1_HUMAN	phosphoglucomutase 3	158					dolichol-linked oligosaccharide biosynthetic process|embryo development ending in birth or egg hatching|glucose 1-phosphate metabolic process|hemopoiesis|post-translational protein modification|protein N-linked glycosylation via asparagine|UDP-N-acetylglucosamine biosynthetic process	cytosol	magnesium ion binding|phosphoacetylglucosamine mutase activity|phosphoglucomutase activity				0		all_cancers(76;0.000504)|Acute lymphoblastic leukemia(125;3.85e-06)|all_hematologic(105;0.0017)|all_epithelial(107;0.068)		BRCA - Breast invasive adenocarcinoma(397;0.0478)		CTGGGGTGTTGTTAACAAGCC	0.383													7	43					0.000274275	0.00107751	0.000274275	1	0
ME1	4199	broad.mit.edu	37	6	84117513	84117513	+	Silent	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr6:84117513G>A	uc003pjy.2	-	2	292	c.186C>T	c.(184-186)TTC>TTT	p.F62F	ME1_uc011dzb.1_Intron|ME1_uc011dzc.1_Intron	NM_002395	NP_002386	P48163	MAOX_HUMAN	cytosolic malic enzyme 1	62					carbohydrate metabolic process|cellular lipid metabolic process|malate metabolic process|NADP biosynthetic process|response to carbohydrate stimulus|response to hormone stimulus	cytosol	ADP binding|electron carrier activity|malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity|manganese ion binding|NAD binding|NADP binding			upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(76;1.28e-06)|Acute lymphoblastic leukemia(125;5.03e-07)|all_hematologic(105;0.000238)|all_epithelial(107;0.00218)		BRCA - Breast invasive adenocarcinoma(397;0.0641)	NADH(DB00157)	TCAGATGCTCGAAATTTTTTA	0.383													11	99					0	0	0.00136819	0	0
CYB5R4	51167	broad.mit.edu	37	6	84627781	84627781	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr6:84627781C>T	uc003pkf.2	+	6	635	c.503C>T	c.(502-504)CCA>CTA	p.P168L		NM_016230	NP_057314	Q7L1T6	NB5R4_HUMAN	cytochrome b5 reductase 4	168	CS.				cell development|detection of oxygen|generation of precursor metabolites and energy|glucose homeostasis|insulin secretion|response to antibiotic|superoxide metabolic process	endoplasmic reticulum|perinuclear region of cytoplasm	cytochrome-b5 reductase activity|heme binding|NAD(P)H oxidase activity			breast(2)	2		all_cancers(76;7e-07)|Acute lymphoblastic leukemia(125;2.69e-07)|all_hematologic(105;0.000151)|all_epithelial(107;0.00128)		BRCA - Breast invasive adenocarcinoma(397;0.0871)		CCTAGTTATCCAAGGTATGCA	0.303													9	82					0	0	0.000442599	0	0
ZNF292	23036	broad.mit.edu	37	6	87969747	87969747	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr6:87969747C>T	uc003plm.3	+	8	6441	c.6400C>T	c.(6400-6402)CAT>TAT	p.H2134Y		NM_015021	NP_055836	O60281	ZN292_HUMAN	zinc finger protein 292	2134	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)	4		all_cancers(76;3.82e-09)|Prostate(29;1.34e-10)|Acute lymphoblastic leukemia(125;2.17e-10)|all_hematologic(105;1.08e-06)|all_epithelial(107;5.31e-05)		BRCA - Breast invasive adenocarcinoma(108;0.0199)		CTTGATTCTCCATTACCAGGC	0.418													14	68					0	0	0.00244969	0	0
SPACA1	81833	broad.mit.edu	37	6	88768451	88768451	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr6:88768451G>A	uc003pmn.2	+	4	502	c.385G>A	c.(385-387)GAA>AAA	p.E129K		NM_030960	NP_112222	Q9HBV2	SACA1_HUMAN	sperm acrosome associated 1 precursor	129	Extracellular (Potential).					integral to membrane					0		all_cancers(76;8.24e-09)|Acute lymphoblastic leukemia(125;2.15e-10)|Prostate(29;4.11e-10)|all_hematologic(105;1.08e-06)|all_epithelial(107;0.00011)		BRCA - Breast invasive adenocarcinoma(108;0.11)		ACCAATTTCAGAAAGTCTTGA	0.294													9	49					0	0	0.000274275	0	0
EPHA7	2045	broad.mit.edu	37	6	93967959	93967959	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr6:93967959C>T	uc003poe.2	-	11	2209	c.1968G>A	c.(1966-1968)GGG>GGA	p.G656G	EPHA7_uc003pof.2_Silent_p.G651G|EPHA7_uc011eac.1_Silent_p.G652G	NM_004440	NP_004431	Q15375	EPHA7_HUMAN	ephrin receptor EphA7 precursor	656	Cytoplasmic (Potential).|Protein kinase.					integral to plasma membrane	ATP binding|ephrin receptor activity	p.G656W(1)		lung(8)|ovary(7)|upper_aerodigestive_tract(3)|central_nervous_system(3)|skin(3)|large_intestine(2)|stomach(1)|pancreas(1)	28		all_cancers(76;7.47e-10)|Acute lymphoblastic leukemia(125;1.88e-09)|all_hematologic(75;1.75e-07)|all_epithelial(107;3.6e-05)|Lung NSC(302;0.0368)|all_lung(197;0.0509)|Colorectal(196;0.142)		BRCA - Breast invasive adenocarcinoma(108;0.0847)		CATCTCTTTTCCCTGGAAGTT	0.388													18	120					0	0	0.00152264	0	0
SMPD2	6610	broad.mit.edu	37	6	109763198	109763198	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr6:109763198C>T	uc003pti.2	+	4	640	c.246C>T	c.(244-246)CTC>CTT	p.L82L	PPIL6_uc003ptg.3_5'Flank|PPIL6_uc010kdo.2_5'Flank|PPIL6_uc010kdp.2_5'Flank|PPIL6_uc003pth.1_5'Flank	NM_003080	NP_003071	O60906	NSMA_HUMAN	sphingomyelin phosphodiesterase 2, neutral	82					induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|sphingomyelin metabolic process	integral to plasma membrane	metal ion binding|sphingomyelin phosphodiesterase activity				0		all_cancers(87;1.1e-06)|Acute lymphoblastic leukemia(125;2.66e-08)|all_hematologic(75;1.13e-06)|all_epithelial(87;0.000144)|all_lung(197;0.0221)|Colorectal(196;0.0488)|Lung SC(18;0.0548)		Epithelial(106;0.0137)|all cancers(137;0.0188)|OV - Ovarian serous cystadenocarcinoma(136;0.0228)|BRCA - Breast invasive adenocarcinoma(108;0.0566)		GCAGTGGCCTCTGTGTCTTCT	0.517													31	184					0	0	0.000953801	0	0
MICAL1	64780	broad.mit.edu	37	6	109773593	109773593	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr6:109773593G>A	uc003ptj.2	-	5	942	c.688C>T	c.(688-690)CGA>TGA	p.R230*	MICAL1_uc003ptk.2_Nonsense_Mutation_p.R230*|MICAL1_uc010kdr.2_Nonsense_Mutation_p.R230*|MICAL1_uc011eaq.1_Nonsense_Mutation_p.R249*	NM_022765	NP_073602	Q8TDZ2	MICA1_HUMAN	microtubule associated monoxygenase, calponin	230					cytoskeleton organization|signal transduction	cytoplasm|intermediate filament	SH3 domain binding|zinc ion binding			breast(2)|ovary(1)	3		all_cancers(87;0.000189)|Acute lymphoblastic leukemia(125;3.07e-08)|all_hematologic(75;3.33e-06)|all_epithelial(87;0.00686)|Lung SC(18;0.0743)|Colorectal(196;0.101)|all_lung(197;0.149)		Epithelial(106;0.0142)|all cancers(137;0.0197)|OV - Ovarian serous cystadenocarcinoma(136;0.0233)|BRCA - Breast invasive adenocarcinoma(108;0.0574)		CGCATTTCTCGAACTTTGAAG	0.537													10	96					0	0	0.000442599	0	0
PTPRK	5796	broad.mit.edu	37	6	128561213	128561213	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr6:128561213C>T	uc003qbk.2	-	5	1027	c.660G>A	c.(658-660)GGG>GGA	p.G220G	PTPRK_uc003qbj.2_Silent_p.G220G|PTPRK_uc010kfc.2_Silent_p.G220G|PTPRK_uc011ebu.1_Silent_p.G220G|PTPRK_uc003qbl.1_Silent_p.G90G|PTPRK_uc011ebv.1_Silent_p.G220G	NM_002844	NP_002835	Q15262	PTPRK_HUMAN	protein tyrosine phosphatase, receptor type, K	220	Extracellular (Potential).|Ig-like C2-type.				cell migration|cellular response to reactive oxygen species|cellular response to UV|focal adhesion assembly|negative regulation of cell cycle|negative regulation of cell migration|negative regulation of keratinocyte proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transforming growth factor beta receptor signaling pathway	adherens junction|cell surface|cell-cell junction|integral to plasma membrane|leading edge membrane	beta-catenin binding|gamma-catenin binding|protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|skin(2)|pancreas(1)|kidney(1)|central_nervous_system(1)	8				all cancers(137;0.0118)|GBM - Glioblastoma multiforme(226;0.0372)|OV - Ovarian serous cystadenocarcinoma(136;0.24)		CAGCATCTCTCCCTGTGGCAA	0.443													6	58					0	0	0.00198382	0	0
TAAR9	134860	broad.mit.edu	37	6	132859650	132859650	+	Silent	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr6:132859650G>A	uc011eci.1	+	2	224	c.222G>A	c.(220-222)CTG>CTA	p.L74L		NM_175057	NP_778227	Q96RI9	TAAR9_HUMAN	trace amine associated receptor 9	74	Helical; Name=2; (Potential).					plasma membrane	G-protein coupled receptor activity				0	Breast(56;0.112)			OV - Ovarian serous cystadenocarcinoma(155;0.0042)|GBM - Glioblastoma multiforme(226;0.00816)		TTGCGTCGCTGGCCTGTGCTG	0.498													7	73					0	0	0.000157383	0	0
NOX3	50508	broad.mit.edu	37	6	155774583	155774584	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr6:155774583_155774584GG>AA	uc003qqm.2	-	4	397_398	c.294_295CC>TT	c.(292-297)AACCTC>AATTTC	p.L99F		NM_015718	NP_056533	Q9HBY0	NOX3_HUMAN	NADPH oxidase 3	99	Ferric oxidoreductase.|Cytoplasmic (Potential).						electron carrier activity|flavin adenine dinucleotide binding|iron ion binding			ovary(1)	1		Breast(66;0.0183)		OV - Ovarian serous cystadenocarcinoma(155;2.18e-12)|BRCA - Breast invasive adenocarcinoma(81;0.00815)		TGAAATCTGAGGTTTTTGTCTA	0.366													27	271					0	0	6.4e-05	0	0
TAGAP	117289	broad.mit.edu	37	6	159457774	159457774	+	Silent	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr6:159457774G>A	uc003qrz.2	-	10	1613	c.1281C>T	c.(1279-1281)TTC>TTT	p.F427F	TAGAP_uc011eft.1_Silent_p.F364F|TAGAP_uc003qsa.2_Silent_p.F249F	NM_054114	NP_473455	Q8N103	TAGAP_HUMAN	T-cell activation Rho GTPase-activating protein	427					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|guanyl-nucleotide exchange factor activity			ovary(1)	1		Breast(66;0.000776)|Ovarian(120;0.0303)		OV - Ovarian serous cystadenocarcinoma(65;2.16e-16)|BRCA - Breast invasive adenocarcinoma(81;5.87e-06)		GCACTGCAGGGAAGACCTCCT	0.572													12	59					0	0	0.00136819	0	0
PLG	5340	broad.mit.edu	37	6	161160173	161160173	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr6:161160173G>A	uc003qtm.3	+	16	2014	c.1951G>A	c.(1951-1953)GAA>AAA	p.E651K		NM_000301	NP_000292	P00747	PLMN_HUMAN	plasminogen	651	Peptidase S1.				extracellular matrix disassembly|fibrinolysis|negative regulation of cell proliferation|negative regulation of cell-substrate adhesion|negative regulation of fibrinolysis|platelet activation|platelet degranulation|positive regulation of fibrinolysis|proteolysis|tissue remodeling	extracellular space|extrinsic to external side of plasma membrane|platelet alpha granule lumen	apolipoprotein binding|cell surface binding|serine-type endopeptidase activity			skin(3)|ovary(1)	4				OV - Ovarian serous cystadenocarcinoma(65;5.24e-17)|BRCA - Breast invasive adenocarcinoma(81;7.08e-06)	Aminocaproic Acid(DB00513)|Streptokinase(DB00086)|Tranexamic Acid(DB00302)|Urokinase(DB00013)	GCATGTTCAGGAAATAGAAGT	0.498													12	77					0	0	0.000978159	0	0
PDE10A	10846	broad.mit.edu	37	6	165792793	165792793	+	Silent	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr6:165792793G>A	uc003qun.2	-	19	2086	c.1845C>T	c.(1843-1845)ATC>ATT	p.I615I	PDE10A_uc011egj.1_RNA|PDE10A_uc011egk.1_Silent_p.I545I|PDE10A_uc003quo.2_Silent_p.I625I	NM_006661	NP_006652	Q9Y233	PDE10_HUMAN	phosphodiesterase 10A isoform 2	615					platelet activation|signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cAMP binding|cGMP binding|metal ion binding			ovary(3)|skin(2)	5		Breast(66;0.000425)|Prostate(117;0.104)|Ovarian(120;0.221)		OV - Ovarian serous cystadenocarcinoma(33;1.5e-17)|BRCA - Breast invasive adenocarcinoma(81;1.8e-06)|GBM - Glioblastoma multiforme(31;1.92e-05)	Dipyridamole(DB00975)	CTTTGCGGATGATCTCAAGCA	0.418													7	72					0	0	0.000442599	0	0
RPS6KA2	6196	broad.mit.edu	37	6	166862232	166862232	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr6:166862232C>T	uc003qvb.1	-	14	1531	c.1312G>A	c.(1312-1314)GAC>AAC	p.D438N	RPS6KA2_uc011ego.1_Missense_Mutation_p.D349N|RPS6KA2_uc010kkl.1_Missense_Mutation_p.D349N|RPS6KA2_uc003qvc.1_Missense_Mutation_p.D446N|RPS6KA2_uc003qvd.1_Missense_Mutation_p.D463N	NM_021135	NP_066958	Q15349	KS6A2_HUMAN	ribosomal protein S6 kinase, 90kDa, polypeptide	438	Protein kinase 2.				axon guidance|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|stress-activated MAPK cascade|synaptic transmission|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(2)|lung(2)|skin(2)|large_intestine(1)|central_nervous_system(1)	8		Breast(66;2.04e-05)|Ovarian(120;0.0652)|Prostate(117;0.105)		OV - Ovarian serous cystadenocarcinoma(33;2.76e-18)|GBM - Glioblastoma multiforme(31;9.94e-06)|BRCA - Breast invasive adenocarcinoma(81;1.36e-05)		TACTCGGTGTCTGTGGCTTTA	0.587													5	10					0	0	0.000602214	0	0
C7orf70	84792	broad.mit.edu	37	7	6370297	6370297	+	Missense_Mutation	SNP	T	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr7:6370297T>A	uc003spu.2	-	2	957	c.489A>T	c.(487-489)GAA>GAT	p.E163D		NM_001037163	NP_001032240	Q7Z4H9	SIPAR_HUMAN	hypothetical protein LOC84792	163						nucleus					0						AACTTCCCATTTCCGGCACTT	0.607													5	42					0	0	0.000602214	0	0
DGKB	1607	broad.mit.edu	37	7	14661117	14661117	+	Missense_Mutation	SNP	T	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr7:14661117T>A	uc003ssz.2	-	14	1360	c.1173A>T	c.(1171-1173)GAA>GAT	p.E391D	DGKB_uc011jxt.1_Missense_Mutation_p.E372D|DGKB_uc003sta.2_Missense_Mutation_p.E391D|DGKB_uc011jxu.1_Missense_Mutation_p.E390D	NM_004080	NP_004071	Q9Y6T7	DGKB_HUMAN	diacylglycerol kinase, beta isoform 1	391					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	cytoplasm|plasma membrane	ATP binding|calcium ion binding|diacylglycerol kinase activity|protein binding			lung(5)|ovary(4)|breast(2)|skin(1)	12					Phosphatidylserine(DB00144)	TTGATTGTCTTTCCTGTAAAA	0.289													8	16					0	0	0.000274275	0	0
RAPGEF5	9771	broad.mit.edu	37	7	22306590	22306590	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr7:22306590C>T	uc003svg.2	-	7	643	c.330G>A	c.(328-330)AGG>AGA	p.R110R		NM_012294	NP_036426	Q92565	RPGF5_HUMAN	Rap guanine nucleotide exchange factor (GEF) 5	Error:Variant_position_missing_in_Q92565_after_alignment					nervous system development|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	nucleus	GTP-dependent protein binding|Rap guanyl-nucleotide exchange factor activity			ovary(1)	1						TACCAGACTTCCTTGCTTTCA	0.393													13	62					0	0	0.00185496	0	0
MGC87042	256227	broad.mit.edu	37	7	22533211	22533211	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr7:22533211G>A	uc003svh.2	-	3	369	c.272C>T	c.(271-273)CCA>CTA	p.P91L	MGC87042_uc010kum.1_Missense_Mutation_p.P110L			Q6NZ63	STEAL_HUMAN	SubName: Full=cDNA FLJ60218, highly similar to Six transmembrane epithelial antigen ofprostate 1;	91						integral to membrane	electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|oxidoreductase activity				0						GACCAGGATTGGAATTTTATA	0.388													7	41					0	0	0.000274275	0	0
ZMIZ2	83637	broad.mit.edu	37	7	44798971	44798971	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr7:44798971C>T	uc003tlr.2	+	7	1028	c.905C>T	c.(904-906)TCC>TTC	p.S302F	ZMIZ2_uc003tlq.2_Missense_Mutation_p.S270F|ZMIZ2_uc003tls.2_Missense_Mutation_p.S302F|ZMIZ2_uc003tlt.2_5'Flank|ZMIZ2_uc010kyj.2_5'Flank	NM_031449	NP_113637	Q8NF64	ZMIZ2_HUMAN	zinc finger, MIZ-type containing 2 isoform 1	302	Pro-rich.				positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear replication fork	ligand-dependent nuclear receptor transcription coactivator activity|protein binding|zinc ion binding			ovary(2)|large_intestine(2)|breast(1)	5						CCTGCCCCCTCCCCTTCCTAC	0.652													8	38					0	0	0.000274275	0	0
COBL	23242	broad.mit.edu	37	7	51095552	51095552	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr7:51095552C>T	uc003tpr.3	-	10	3426	c.3241G>A	c.(3241-3243)GAC>AAC	p.D1081N	COBL_uc003tps.2_Missense_Mutation_p.D1138N|COBL_uc011kcl.1_Missense_Mutation_p.D1081N|COBL_uc003tpp.3_Missense_Mutation_p.D867N|COBL_uc003tpq.3_Missense_Mutation_p.D1022N|COBL_uc003tpo.3_Missense_Mutation_p.D623N	NM_015198	NP_056013	O75128	COBL_HUMAN	cordon-bleu homolog	1081										skin(3)|ovary(2)	5	Glioma(55;0.08)					CAAATACTGTCTGTTTCATTT	0.498													11	90					0	0	0.00136819	0	0
PCLO	27445	broad.mit.edu	37	7	82390062	82390062	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr7:82390062G>A	uc003uhx.2	-	24	15470	c.15181C>T	c.(15181-15183)CAA>TAA	p.Q5061*		NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	4984	C2 2.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						ACCTTTTTTTGGGTAGAAATA	0.303													4	23					0	0	0.00024832	0	0
GRM3	2913	broad.mit.edu	37	7	86468472	86468472	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr7:86468472G>A	uc003uid.2	+	4	2741	c.1642G>A	c.(1642-1644)GAT>AAT	p.D548N	GRM3_uc010lef.2_Intron|GRM3_uc010leg.2_Missense_Mutation_p.D420N|GRM3_uc010leh.2_Missense_Mutation_p.D140N	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	548	Extracellular (Potential).				synaptic transmission	integral to plasma membrane				lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	TACCTGTATGGATTGTGGGTC	0.527													7	88					0	0	0.000274275	0	0
ZNF804B	219578	broad.mit.edu	37	7	88956692	88956692	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr7:88956692G>A	uc011khi.1	+	3	822	c.284G>A	c.(283-285)CGA>CAA	p.R95Q		NM_181646	NP_857597	A4D1E1	Z804B_HUMAN	zinc finger protein 804B	95						intracellular	zinc ion binding			ovary(5)|skin(3)|pancreas(2)|upper_aerodigestive_tract(1)	11	all_hematologic(106;0.125)|Lung NSC(181;0.15)|all_lung(186;0.151)		STAD - Stomach adenocarcinoma(171;0.0513)			GAATTTGCTCGAAATGTAGCT	0.338										HNSCC(36;0.09)			9	40					0	0	0.000274275	0	0
PCOLCE	5118	broad.mit.edu	37	7	100200087	100200087	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr7:100200087C>T	uc003uvo.2	+	1	206	c.8C>T	c.(7-9)CCT>CTT	p.P3L	uc011kjy.1_RNA|PCOLCE_uc011kkb.1_Missense_Mutation_p.P3L|PCOLCE_uc010lhb.1_RNA	NM_002593	NP_002584	Q15113	PCOC1_HUMAN	procollagen C-endopeptidase enhancer	3					multicellular organismal development	extracellular space	collagen binding|heparin binding|peptidase activator activity				0	Lung NSC(181;0.0261)|all_lung(186;0.0392)|Esophageal squamous(72;0.0439)					GCCATGCTGCCTGCAGCCACA	0.532													5	39					0	0	0.000602214	0	0
EPO	2056	broad.mit.edu	37	7	100320727	100320727	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr7:100320727G>A	uc003uwi.2	+	5	734	c.553G>A	c.(553-555)GGG>AGG	p.G185R	EPO_uc011kkc.1_Missense_Mutation_p.G184R	NM_000799	NP_000790	P01588	EPO_HUMAN	erythropoietin precursor	185					blood circulation|cellular hyperosmotic response|erythrocyte maturation|negative regulation of apoptosis|negative regulation of ion transmembrane transporter activity|negative regulation of sodium ion transport|positive regulation of cell proliferation|positive regulation of DNA replication|positive regulation of Ras protein signal transduction|positive regulation of transcription, DNA-dependent|positive regulation of tyrosine phosphorylation of Stat5 protein|signal transduction	extracellular space	erythropoietin receptor binding|eukaryotic cell surface binding|hormone activity			central_nervous_system(2)	2	Lung NSC(181;0.041)|all_lung(186;0.0581)				Darbepoetin alfa(DB00012)|Epoetin alfa(DB00016)	GCTGTACACAGGGGAGGCCTG	0.587													6	59					0	0	0.00198382	0	0
MUC17	140453	broad.mit.edu	37	7	100677629	100677629	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr7:100677629C>T	uc003uxp.1	+	3	2985	c.2932C>T	c.(2932-2934)CCT>TCT	p.P978S	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	978	Extracellular (Potential).|Ser-rich.|59 X approximate tandem repeats.|14.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					AACCTCGACTCCTAGTGAAGG	0.507													24	182					0	0	0.00278032	0	0
MUC17	140453	broad.mit.edu	37	7	100679055	100679055	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr7:100679055G>A	uc003uxp.1	+	3	4411	c.4358G>A	c.(4357-4359)GGA>GAA	p.G1453E	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	1453	Extracellular (Potential).|Ser-rich.|22.|59 X approximate tandem repeats.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					CCTAGTGAAGGAAAGACTCCA	0.498													25	173					0	0	0.00047179	0	0
MOGAT3	346606	broad.mit.edu	37	7	100844110	100844110	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr7:100844110G>A	uc003uyc.2	-	1	193	c.26C>T	c.(25-27)CCC>CTC	p.P9L	MOGAT3_uc010lhr.2_Missense_Mutation_p.P9L	NM_178176	NP_835470	Q86VF5	MOGT3_HUMAN	monoacylglycerol O-acyltransferase 3	9					glycerol metabolic process|lipid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	2-acylglycerol O-acyltransferase activity|diacylglycerol O-acyltransferase activity			ovary(2)	2	Lung NSC(181;0.168)|all_lung(186;0.215)					AGTGGTTGGGGGCTGCAGGGT	0.567													7	21					0	0	0.000442599	0	0
RNF133	168433	broad.mit.edu	37	7	122338646	122338646	+	Silent	SNP	A	G	G			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr7:122338646A>G	uc003vkj.1	-	1	563	c.327T>C	c.(325-327)GGT>GGC	p.G109G	CADPS2_uc010lkp.2_Intron|CADPS2_uc010lkq.2_Intron	NM_139175	NP_631914	Q8WVZ7	RN133_HUMAN	ring finger protein 133	109	PA.					endoplasmic reticulum membrane|integral to membrane	ligase activity|zinc ion binding			skin(1)	1						TGAAGGTACAACCTCCCCGTT	0.463													11	117					0	0	0.00136819	0	0
POT1	25913	broad.mit.edu	37	7	124469352	124469352	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr7:124469352G>A	uc003vlm.2	-	16	2151	c.1550C>T	c.(1549-1551)TCC>TTC	p.S517F	POT1_uc011koe.1_RNA|POT1_uc003vlk.2_RNA|POT1_uc003vll.2_RNA|POT1_uc003vlo.2_Missense_Mutation_p.S386F|POT1_uc003vln.2_Intron	NM_015450	NP_056265	Q9NUX5	POTE1_HUMAN	protection of telomeres 1 isoform 1	517					DNA duplex unwinding|negative regulation of telomere maintenance via telomerase|positive regulation of DNA strand elongation|positive regulation of helicase activity|positive regulation of telomerase activity|positive regulation of telomere maintenance via telomerase|telomere capping|telomere formation via telomerase|telomere maintenance via telomerase	nuclear telomere cap complex|nucleoplasm	DEAD/H-box RNA helicase binding|single-stranded telomeric DNA binding|telomerase inhibitor activity			central_nervous_system(1)	1						ATCAACCAGGGAATTTAGATT	0.303													6	85					0	0	0.000157383	0	0
GRM8	2918	broad.mit.edu	37	7	126086239	126086239	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr7:126086239C>T	uc003vlr.2	-	9	2929	c.2618G>A	c.(2617-2619)GGA>GAA	p.G873E	GRM8_uc003vls.2_RNA|GRM8_uc011kof.1_RNA|GRM8_uc003vlt.2_Missense_Mutation_p.G873E|GRM8_uc010lkz.1_RNA	NM_000845	NP_000836	O00222	GRM8_HUMAN	glutamate receptor, metabotropic 8 isoform a	873	Cytoplasmic (Potential).				negative regulation of cAMP biosynthetic process|sensory perception of smell|visual perception	integral to plasma membrane				lung(15)|ovary(5)|pancreas(1)|breast(1)|skin(1)	23		Prostate(267;0.186)			L-Glutamic Acid(DB00142)	TCTGTCATTTCCTTTTTGGAT	0.438										HNSCC(24;0.065)			21	120					0	0	0.00121646	0	0
GRM8	2918	broad.mit.edu	37	7	126410017	126410017	+	Missense_Mutation	SNP	T	C	C			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr7:126410017T>C	uc003vlr.2	-	6	1570	c.1259A>G	c.(1258-1260)CAC>CGC	p.H420R	GRM8_uc003vls.2_RNA|GRM8_uc011kof.1_RNA|GRM8_uc003vlt.2_Missense_Mutation_p.H420R|GRM8_uc010lkz.1_RNA|GRM8_uc003vlu.1_Missense_Mutation_p.H141R	NM_000845	NP_000836	O00222	GRM8_HUMAN	glutamate receptor, metabotropic 8 isoform a	420	Extracellular (Potential).				negative regulation of cAMP biosynthetic process|sensory perception of smell|visual perception	integral to plasma membrane				lung(15)|ovary(5)|pancreas(1)|breast(1)|skin(1)	23		Prostate(267;0.186)			L-Glutamic Acid(DB00142)	GAGATCTTTGTGCATATTGTG	0.428										HNSCC(24;0.065)			5	41					0	0	0.00116845	0	0
TBXAS1	6916	broad.mit.edu	37	7	139636089	139636089	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr7:139636089C>T	uc011kqv.1	+	5	600	c.436C>T	c.(436-438)CCT>TCT	p.P146S	TBXAS1_uc003vvh.2_Missense_Mutation_p.P146S|TBXAS1_uc010lne.2_Missense_Mutation_p.P78S|TBXAS1_uc011kqu.1_Missense_Mutation_p.P97S|TBXAS1_uc003vvi.2_Missense_Mutation_p.P146S|TBXAS1_uc003vvj.2_Missense_Mutation_p.P146S|TBXAS1_uc011kqw.1_Missense_Mutation_p.P126S	NM_001130966	NP_001124438	P24557	THAS_HUMAN	thromboxane A synthase 1, platelet isoform	145	Cytoplasmic (Potential).				hormone biosynthetic process|prostaglandin biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum lumen|endoplasmic reticulum membrane|integral to membrane	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen|thromboxane-A synthase activity			ovary(2)|breast(1)	3	Melanoma(164;0.0142)					TGCTTTCAGTCCTGAAAAGCT	0.483													28	183					0	0	0.00127121	0	0
ADCK2	90956	broad.mit.edu	37	7	140373513	140373514	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr7:140373513_140373514CC>TT	uc003vvy.1	+	1	561_562	c.383_384CC>TT	c.(382-384)ACC>ATT	p.T128I	ADCK2_uc003vvz.2_Missense_Mutation_p.T128I	NM_052853	NP_443085	Q7Z695	ADCK2_HUMAN	aarF domain containing kinase 2	128						integral to membrane	ATP binding|protein serine/threonine kinase activity				0	Melanoma(164;0.00956)					AGCGTCTCCACCCTCTGGCTCC	0.629													6	82					0	0	6.4e-05	0	0
BRAF	673	broad.mit.edu	37	7	140453135	140453136	+	Missense_Mutation	DNP	CA	TT	TT	rs121913227		TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr7:140453135_140453136CA>TT	uc003vwc.3	-	15	1860_1861	c.1799_1800TG>AA	c.(1798-1800)GTG>GAA	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	ATCGAGATTTCACTGTAGCTAG	0.371	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				7	70					0	0	6.4e-05	0	0
TAS2R38	5726	broad.mit.edu	37	7	141673246	141673246	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr7:141673246G>A	uc003vwx.1	-	1	328	c.244C>T	c.(244-246)CAG>TAG	p.Q82*		NM_176817	NP_789787	P59533	T2R38_HUMAN	taste receptor, type 2, member 38	82	Extracellular (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity			kidney(1)|skin(1)	2	Melanoma(164;0.0171)					CTCAACTTCTGGAAGTGGGTA	0.527													18	136					0	0	0.00188189	0	0
OR2A2	442361	broad.mit.edu	37	7	143807353	143807353	+	Silent	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr7:143807353G>A	uc011ktz.1	+	1	678	c.678G>A	c.(676-678)AAG>AAA	p.K226K		NM_001005480	NP_001005480	Q6IF42	OR2A2_HUMAN	olfactory receptor, family 2, subfamily A,	226	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Melanoma(164;0.0783)					CCATCCTGAAGATCCAGACAA	0.507													11	83					0	0	0.000673444	0	0
OR2A14	135941	broad.mit.edu	37	7	143826686	143826686	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr7:143826686C>T	uc011kua.1	+	1	481	c.481C>T	c.(481-483)CTC>TTC	p.L161F		NM_001001659	NP_001001659	Q96R47	O2A14_HUMAN	olfactory receptor, family 2, subfamily A,	161	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Melanoma(164;0.0783)					CCCTTTAGTTCTCATCCTGAG	0.542													24	213					0	0	0.00106085	0	0
CNTNAP2	26047	broad.mit.edu	37	7	146471374	146471374	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr7:146471374G>A	uc003weu.1	+	2	625	c.109G>A	c.(109-111)GAG>AAG	p.E37K		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	37	F5/8 type C.|Extracellular (Potential).				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			AAAATGTGATGAGCCACTTGT	0.443										HNSCC(39;0.1)			10	28					0	0	0.00185496	0	0
SPAG11B	10407	broad.mit.edu	37	8	7308681	7308681	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr8:7308681C>T	uc003wrk.2	-	3	422	c.255G>A	c.(253-255)AGG>AGA	p.R85R	SPAG11B_uc003wrg.1_Intron|SPAG11B_uc003wrh.1_Intron|SPAG11B_uc003wri.2_Silent_p.R32R|SPAG11B_uc003wrj.2_Intron|SPAG11B_uc003wrl.2_Intron	NM_016512	NP_057596	Q08648	SG11B_HUMAN	sperm associated antigen 11B isoform A	85					spermatogenesis	extracellular region					0				COAD - Colon adenocarcinoma(149;0.0162)|READ - Rectum adenocarcinoma(644;0.236)		CCACACAGATCCTAAATGAGG	0.463													8	214					0	0	0.000274275	0	0
RP1L1	94137	broad.mit.edu	37	8	10465906	10465906	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr8:10465906G>A	uc003wtc.2	-	4	5931	c.5702C>T	c.(5701-5703)CCA>CTA	p.P1901L		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	1901					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		TTCTGACTCTGGCTGGACCTC	0.597													9	118					0	0	0.000673444	0	0
XKR6	286046	broad.mit.edu	37	8	10755821	10755821	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr8:10755821G>A	uc003wtk.1	-	3	1594	c.1567C>T	c.(1567-1569)CCC>TCC	p.P523S		NM_173683	NP_775954	Q5GH73	XKR6_HUMAN	XK, Kell blood group complex subunit-related	523						integral to membrane				ovary(1)|skin(1)	2				Lung(29;0.0407)|COAD - Colon adenocarcinoma(149;0.0555)		ACATCGGGGGGCAAAGGGATG	0.602													7	29					0	0	0.000157383	0	0
EBF2	64641	broad.mit.edu	37	8	25708162	25708162	+	Silent	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr8:25708162G>A	uc003xes.1	-	15	1661	c.1644C>T	c.(1642-1644)CCC>CCT	p.P548P	PPP2R2A_uc003xek.2_Intron|EBF2_uc010lug.1_RNA	NM_022659	NP_073150	Q9HAK2	COE2_HUMAN	early B-cell factor 2	548					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|metal ion binding			ovary(3)|skin(1)	4		all_cancers(63;0.0989)|Ovarian(32;2.74e-05)|all_epithelial(46;0.0608)|Prostate(55;0.0845)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0277)|Epithelial(17;3.29e-10)|Colorectal(74;0.00383)|COAD - Colon adenocarcinoma(73;0.00738)		GGGAGCCTTGGGGCCTGATGA	0.522													11	96					0	0	0.000978159	0	0
ADRA1A	148	broad.mit.edu	37	8	26628003	26628003	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr8:26628003G>A	uc003xfh.1	-	2	1500	c.1064C>T	c.(1063-1065)GCC>GTC	p.A355V	ADRA1A_uc003xfc.1_Missense_Mutation_p.A355V|ADRA1A_uc010lul.1_Intron|ADRA1A_uc003xfd.1_Intron|ADRA1A_uc003xfe.1_Missense_Mutation_p.A355V|ADRA1A_uc010lum.1_Intron|ADRA1A_uc003xff.1_Intron|ADRA1A_uc003xfg.1_Missense_Mutation_p.A355V	NM_000680	NP_000671	P35348	ADA1A_HUMAN	alpha-1A-adrenergic receptor isoform 1	355	Cytoplasmic (By similarity).				activation of phospholipase C activity|aging|apoptosis|calcium ion transport into cytosol|cell-cell signaling|intracellular protein kinase cascade|negative regulation of cell proliferation|negative regulation of Rho protein signal transduction|negative regulation of synaptic transmission, GABAergic|positive regulation of action potential|positive regulation of cardiac muscle contraction|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein kinase C signaling cascade|positive regulation of vasoconstriction|response to drug|response to hormone stimulus|response to stress|smooth muscle contraction	integral to plasma membrane	alpha1-adrenergic receptor activity			breast(2)|ovary(1)|lung(1)|skin(1)	5		all_cancers(63;0.122)|Ovarian(32;2.61e-05)|all_epithelial(46;0.118)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0228)|Epithelial(17;4.92e-10)|Colorectal(74;0.0132)|READ - Rectum adenocarcinoma(644;0.115)	Alfuzosin(DB00346)|Amiodarone(DB01118)|Amphetamine(DB00182)|Benzphetamine(DB00865)|Bethanidine(DB00217)|Carvedilol(DB01136)|Dapiprazole(DB00298)|Debrisoquin(DB04840)|Dextroamphetamine(DB01576)|Doxazosin(DB00590)|Epinastine(DB00751)|Epinephrine(DB00668)|Ergotamine(DB00696)|Flupenthixol(DB00875)|Guanadrel Sulfate(DB00226)|Guanethidine(DB01170)|Labetalol(DB00598)|Lisdexamfetamine(DB01255)|Maprotiline(DB00934)|Mephentermine(DB01365)|Metaraminol(DB00610)|Methamphetamine(DB01577)|Methotrimeprazine(DB01403)|Methoxamine(DB00723)|Midodrine(DB00211)|Nefazodone(DB01149)|Nicergoline(DB00699)|Nilutamide(DB00665)|Norepinephrine(DB00368)|Norgestrel(DB00506)|Oxymetazoline(DB00935)|Perphenazine(DB00850)|Phendimetrazine(DB01579)|Phenoxybenzamine(DB00925)|Phenylephrine(DB00388)|Phenylpropanolamine(DB00397)|Prazosin(DB00457)|Promazine(DB00420)|Promethazine(DB01069)|Propericiazine(DB01608)|Propiomazine(DB00777)|Pseudoephedrine(DB00852)|Risperidone(DB00734)|Sertindole(DB06144)|Tamsulosin(DB00706)|Terazosin(DB01162)|Thioridazine(DB00679)|Tolazoline(DB00797)|Trazodone(DB00656)|Trifluoperazine(DB00831)|Ziprasidone(DB00246)	GTAGCCCAGGGCATGTTTGGA	0.542													23	145					0	0	0.00047179	0	0
DDHD2	23259	broad.mit.edu	37	8	38107265	38107265	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr8:38107265C>T	uc003xlb.2	+	11	1665	c.1288C>T	c.(1288-1290)CCT>TCT	p.P430S	DDHD2_uc003xlc.2_Missense_Mutation_p.P430S|DDHD2_uc011lbl.1_Missense_Mutation_p.P242S|DDHD2_uc003xld.2_Missense_Mutation_p.P49S	NM_015214	NP_056029	O94830	DDHD2_HUMAN	DDHD domain containing 2 isoform 1	430	SAM.				lipid catabolic process	centrosome	hydrolase activity|metal ion binding			large_intestine(1)|ovary(1)	2	Colorectal(12;0.000442)	all_lung(54;0.0657)|Lung NSC(58;0.175)	BRCA - Breast invasive adenocarcinoma(5;3.76e-25)|COAD - Colon adenocarcinoma(9;0.0977)			AATAGGAATTCCTTTAGGACC	0.348													6	35					0	0	0.00116845	0	0
ST18	9705	broad.mit.edu	37	8	53092745	53092745	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr8:53092745C>T	uc003xqz.2	-	4	370	c.214G>A	c.(214-216)GAA>AAA	p.E72K	ST18_uc011ldq.1_5'UTR|ST18_uc011ldr.1_Missense_Mutation_p.E37K|ST18_uc011lds.1_5'UTR|ST18_uc003xra.2_Missense_Mutation_p.E72K|ST18_uc003xrb.2_Missense_Mutation_p.E72K|ST18_uc010lyb.2_RNA	NM_014682	NP_055497	O60284	ST18_HUMAN	suppression of tumorigenicity 18	72						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|skin(1)	5		Lung NSC(129;0.131)|all_epithelial(80;0.217)|all_lung(136;0.229)				CTGCGGTCTTCTTGGCAGTCT	0.532													18	150					0	0	0.000958276	0	0
RP1	6101	broad.mit.edu	37	8	55540655	55540655	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr8:55540655G>A	uc003xsd.1	+	4	4361	c.4213G>A	c.(4213-4215)GAA>AAA	p.E1405K	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	1405					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			TTGCCTAAGTGAAAAAGAAGC	0.318													12	51					0	0	0.00136819	0	0
PENK	5179	broad.mit.edu	37	8	57354177	57354177	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr8:57354177G>A	uc003xsz.2	-	2	539	c.458C>T	c.(457-459)TCC>TTC	p.S153F	PENK_uc003xta.3_Missense_Mutation_p.S153F	NM_006211	NP_006202	P01210	PENK_HUMAN	proenkephalin	153					neuropeptide signaling pathway	extracellular region	neuropeptide hormone activity|opioid peptide activity			ovary(2)|central_nervous_system(1)|skin(1)	4		all_lung(136;0.229)	Epithelial(17;0.000873)|all cancers(17;0.0069)			CAGGTCTGAGGAATTGGCCAG	0.527													19	76					0	0	0.00074312	0	0
PENK	5179	broad.mit.edu	37	8	57354293	57354293	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr8:57354293C>T	uc003xsz.2	-	2	423	c.342G>A	c.(340-342)ATG>ATA	p.M114I	PENK_uc003xta.3_Missense_Mutation_p.M114I	NM_006211	NP_006202	P01210	PENK_HUMAN	proenkephalin	114					neuropeptide signaling pathway	extracellular region	neuropeptide hormone activity|opioid peptide activity			ovary(2)|central_nervous_system(1)|skin(1)	4		all_lung(136;0.229)	Epithelial(17;0.000873)|all cancers(17;0.0069)			AAAGCTCATCCATTTTCTTCA	0.498													11	98					0	0	0.000673444	0	0
DNAJC5B	85479	broad.mit.edu	37	8	66963846	66963846	+	Missense_Mutation	SNP	G	A	A	rs141686243		TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr8:66963846G>A	uc003xvs.1	+	3	355	c.64G>A	c.(64-66)GAA>AAA	p.E22K	DNAJC5B_uc003xvt.1_RNA	NM_033105	NP_149096	Q9UF47	DNJ5B_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 5	22	J.				protein folding	membrane	heat shock protein binding|unfolded protein binding				0		Lung NSC(129;0.114)|all_lung(136;0.188)	Epithelial(68;0.0213)|all cancers(69;0.0839)|BRCA - Breast invasive adenocarcinoma(89;0.0886)|OV - Ovarian serous cystadenocarcinoma(28;0.112)			AGCTCTATACGAAATTCTTGG	0.398													10	72					0	0	0.000442599	0	0
TRIM55	84675	broad.mit.edu	37	8	67066444	67066444	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr8:67066444G>A	uc003xvv.2	+	9	1625	c.1399G>A	c.(1399-1401)GGG>AGG	p.G467R	TRIM55_uc003xvu.2_Missense_Mutation_p.G467R|TRIM55_uc003xvw.2_Intron|TRIM55_uc003xvx.2_Intron	NM_184085	NP_908973	Q9BYV6	TRI55_HUMAN	tripartite motif-containing 55 isoform 1	467						cytoplasm|microtubule|nucleus	signal transducer activity|zinc ion binding			skin(3)|ovary(1)|central_nervous_system(1)	5		Lung NSC(129;0.138)|all_lung(136;0.221)	Epithelial(68;0.0136)|all cancers(69;0.0582)|BRCA - Breast invasive adenocarcinoma(89;0.0628)|OV - Ovarian serous cystadenocarcinoma(28;0.0904)			CGAAGGTCTGGGGCAAATAGG	0.562													5	25					0	0	0.00116845	0	0
TRIM55	84675	broad.mit.edu	37	8	67066485	67066485	+	Silent	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr8:67066485G>A	uc003xvv.2	+	9	1666	c.1440G>A	c.(1438-1440)CGG>CGA	p.R480R	TRIM55_uc003xvu.2_Silent_p.R480R|TRIM55_uc003xvw.2_Intron|TRIM55_uc003xvx.2_Intron	NM_184085	NP_908973	Q9BYV6	TRI55_HUMAN	tripartite motif-containing 55 isoform 1	480						cytoplasm|microtubule|nucleus	signal transducer activity|zinc ion binding			skin(3)|ovary(1)|central_nervous_system(1)	5		Lung NSC(129;0.138)|all_lung(136;0.221)	Epithelial(68;0.0136)|all cancers(69;0.0582)|BRCA - Breast invasive adenocarcinoma(89;0.0628)|OV - Ovarian serous cystadenocarcinoma(28;0.0904)			CGAATGTACGGAAGGCAGAAG	0.572													5	36					0	0	0.000157383	0	0
SULF1	23213	broad.mit.edu	37	8	70536203	70536203	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr8:70536203C>T	uc010lza.1	+	15	2338	c.1621C>T	c.(1621-1623)CGG>TGG	p.R541W	SULF1_uc003xyd.2_Missense_Mutation_p.R541W|SULF1_uc003xye.2_Missense_Mutation_p.R541W|SULF1_uc003xyf.2_Missense_Mutation_p.R541W|SULF1_uc003xyg.2_Missense_Mutation_p.R541W|SULF1_uc003xyh.1_RNA	NM_015170	NP_055985	Q8IWU6	SULF1_HUMAN	sulfatase 1 precursor	541					apoptosis|bone development|heparan sulfate proteoglycan metabolic process|kidney development|negative regulation of fibroblast growth factor receptor signaling pathway	cell surface|endoplasmic reticulum|extracellular space|Golgi stack	arylsulfatase activity|calcium ion binding			central_nervous_system(3)|ovary(2)|pancreas(1)|skin(1)	7	Breast(64;0.0654)		Epithelial(68;0.0124)|OV - Ovarian serous cystadenocarcinoma(28;0.0265)|all cancers(69;0.0534)			TGTCCATACTCGGCAGACACG	0.413													9	72					0	0	0.000673444	0	0
EYA1	2138	broad.mit.edu	37	8	72123391	72123391	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr8:72123391C>T	uc003xys.3	-	16	1985	c.1698G>A	c.(1696-1698)AAG>AAA	p.K566K	EYA1_uc003xyr.3_Silent_p.K531K|EYA1_uc003xyt.3_Silent_p.K533K|EYA1_uc010lzf.2_Silent_p.K493K|EYA1_uc003xyu.2_Silent_p.K566K|EYA1_uc011lfe.1_Silent_p.K560K|EYA1_uc003xyv.2_Silent_p.K444K	NM_172058	NP_742055	Q99502	EYA1_HUMAN	eyes absent 1 isoform b	566					double-strand break repair|histone dephosphorylation|positive regulation of DNA repair|protein sumoylation|regulation of transcription, DNA-dependent|response to ionizing radiation|sensory perception of sound|transcription, DNA-dependent	cytoplasm|nucleus	metal ion binding|protein tyrosine phosphatase activity			ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	5	Breast(64;0.046)		Epithelial(68;0.0837)|all cancers(69;0.247)			GAATGCTCACCTTTTTTGCTC	0.358													5	85					0	0	0.00198382	0	0
HEY1	23462	broad.mit.edu	37	8	80677781	80677781	+	Missense_Mutation	SNP	T	C	C			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr8:80677781T>C	uc003ybm.2	-	5	757	c.557A>G	c.(556-558)CAT>CGT	p.H186R	HEY1_uc010lzq.2_Missense_Mutation_p.H67R|HEY1_uc003ybl.2_Missense_Mutation_p.H190R	NM_012258	NP_036390	Q9Y5J3	HEY1_HUMAN	hairy/enhancer-of-split related with YRPW motif	186					angiogenesis|negative regulation of Notch signaling pathway|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription regulatory region DNA binding|Notch signaling pathway|transcription, DNA-dependent	nucleus	DNA binding|protein binding			lung(3)	3	all_lung(9;5.1e-05)		Epithelial(68;0.076)|all cancers(69;0.179)			GTGCGGGTGATGTCCGAAGAC	0.692											OREG0018837	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	24					0	0	0.000602214	0	0
CNGB3	54714	broad.mit.edu	37	8	87666270	87666270	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr8:87666270C>T	uc003ydx.2	-	7	919	c.873G>A	c.(871-873)AGG>AGA	p.R291R	CNGB3_uc010maj.2_Silent_p.R153R	NM_019098	NP_061971	Q9NQW8	CNGB3_HUMAN	cyclic nucleotide gated channel beta 3	291	Cytoplasmic (Potential).				signal transduction|visual perception	integral to membrane	cGMP binding			ovary(2)|pancreas(1)	3						TGTAGTGTTTCCTTAGCTCAT	0.254													7	59					0	0	0.00198382	0	0
COLEC10	10584	broad.mit.edu	37	8	120118244	120118244	+	Silent	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr8:120118244G>A	uc003yoo.2	+	6	745	c.648G>A	c.(646-648)AGG>AGA	p.R216R		NM_006438	NP_006429	Q9Y6Z7	COL10_HUMAN	collectin sub-family member 10 precursor	216	C-type lectin.					collagen|cytoplasm	mannose binding			ovary(2)|skin(1)	3	all_cancers(13;4.13e-26)|Lung NSC(37;1.36e-07)|Ovarian(258;0.018)|Hepatocellular(40;0.234)		STAD - Stomach adenocarcinoma(47;0.00113)			ACCTTGAAAGGGAGGGACAGT	0.517													6	29					0	0	0.00116845	0	0
FER1L6	654463	broad.mit.edu	37	8	125082714	125082714	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr8:125082714G>A	uc003yqw.2	+	30	4047	c.3841G>A	c.(3841-3843)GAC>AAC	p.D1281N	uc003yqy.1_Intron	NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	1281	Cytoplasmic (Potential).					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			AAAGATATATGACGGTGATCT	0.418													10	111					0	0	0.00185496	0	0
TMEM71	137835	broad.mit.edu	37	8	133740055	133740055	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr8:133740055G>A	uc003ytp.2	-	6	891	c.662C>T	c.(661-663)TCG>TTG	p.S221L	TMEM71_uc003ytm.1_Missense_Mutation_p.S43L|TMEM71_uc003ytn.2_Missense_Mutation_p.S203L|TMEM71_uc003yto.2_Intron	NM_144649	NP_653250	Q6P5X7	TMM71_HUMAN	transmembrane protein 71 isoform 1	222						integral to membrane				ovary(2)	2	all_neural(3;2.72e-06)|Medulloblastoma(3;7.08e-05)|Ovarian(258;0.00438)|Esophageal squamous(12;0.00507)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;4.46e-05)			TGAATGATCCGAACTATTCTC	0.438													10	108					0	0	0.000442599	0	0
DENND3	22898	broad.mit.edu	37	8	142185557	142185557	+	Missense_Mutation	SNP	A	G	G			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr8:142185557A>G	uc003yvy.2	+	14	2572	c.2294A>G	c.(2293-2295)GAG>GGG	p.E765G	DENND3_uc010mep.2_Missense_Mutation_p.E726G|DENND3_uc003yvz.1_Missense_Mutation_p.E449G	NM_014957	NP_055772	A2RUS2	DEND3_HUMAN	DENN/MADD domain containing 3	765										ovary(1)	1	all_cancers(97;7.36e-15)|all_epithelial(106;2.33e-13)|Lung NSC(106;1.23e-05)|all_lung(105;1.75e-05)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.105)			AGAAATATAGAGGTAAGGACA	0.388											OREG0019025	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	55					0	0	0.000157383	0	0
PPP1R16A	84988	broad.mit.edu	37	8	145722800	145722800	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr8:145722800C>T	uc003zdd.2	+	2	1136	c.223C>T	c.(223-225)CTT>TTT	p.L75F	uc003zde.1_Missense_Mutation_p.R105K|PPP1R16A_uc003zdf.2_Missense_Mutation_p.L75F	NM_032902	NP_116291	Q96I34	PP16A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	75	ANK 1.					plasma membrane	protein binding				0	all_cancers(97;5.56e-11)|all_epithelial(106;3.54e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.48e-41)|Epithelial(56;1.85e-40)|all cancers(56;3.59e-35)|BRCA - Breast invasive adenocarcinoma(115;0.0483)|Colorectal(110;0.055)			CAGTGTTGTCCTTCTGGAGGC	0.657													7	22					0	0	0.000157383	0	0
GLIS3	169792	broad.mit.edu	37	9	4285999	4285999	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr9:4285999C>T	uc003zii.1	-	2	1140	c.427G>A	c.(427-429)GAT>AAT	p.D143N	GLIS3_uc003zhx.1_Intron|GLIS3_uc003zic.1_Intron|GLIS3_uc003zie.1_Intron|GLIS3_uc010mhh.1_Intron|GLIS3_uc003zid.1_Intron|GLIS3_uc010mhi.1_Intron|GLIS3_uc003zif.1_Intron|GLIS3_uc003zig.1_Intron|GLIS3_uc003zih.1_Intron			Q8NEA6	GLIS3_HUMAN	SubName: Full=GLIS family zinc finger 3 transcript variant TS2; SubName: Full=GLIS family zinc finger 3 transcript variant TS3; SubName: Full=GLIS family zinc finger 3 transcript variant TS4; SubName: Full=GLIS family zinc finger 3 transcript variant TS5; Flags: Fragment;	Error:Variant_position_missing_in_Q8NEA6_after_alignment					negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter		DNA binding|zinc ion binding			ovary(1)	1		Acute lymphoblastic leukemia(2;0.00464)|Breast(48;0.148)		Lung(2;0.00163)|GBM - Glioblastoma multiforme(50;0.00301)|LUSC - Lung squamous cell carcinoma(2;0.0148)		AGAAAAAAATCGTTTCCATTT	0.393													9	56					0	0	0.000274275	0	0
CER1	9350	broad.mit.edu	37	9	14720112	14720113	+	Missense_Mutation	DNP	GG	AA	AA	rs142384565		TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr9:14720112_14720113GG>AA	uc003zlj.2	-	2	824_825	c.779_780CC>TT	c.(778-780)TCC>TTT	p.S260F		NM_005454	NP_005445	O95813	CER1_HUMAN	cerberus 1 precursor	260					BMP signaling pathway	extracellular space	cytokine activity				0				GBM - Glioblastoma multiforme(50;3.16e-06)		CTGGGATAAAGGAATCCTGGGA	0.465													9	46					0	0	6.4e-05	0	0
UNC13B	10497	broad.mit.edu	37	9	35382413	35382413	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr9:35382413C>T	uc003zwq.2	+	20	2760	c.2468C>T	c.(2467-2469)ACC>ATC	p.T823I	UNC13B_uc003zwr.2_Missense_Mutation_p.T823I	NM_006377	NP_006368	O14795	UN13B_HUMAN	UNC13 (C. elegans)-like	823					excretion|induction of apoptosis|intracellular signal transduction	cell junction|Golgi apparatus|synapse	metal ion binding|receptor activity			ovary(3)|large_intestine(1)|skin(1)	5	all_epithelial(49;0.212)		LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)|STAD - Stomach adenocarcinoma(86;0.194)			GTGATGAGCACCTTACTGGCC	0.502													17	89					0	0	0.000566183	0	0
RUSC2	9853	broad.mit.edu	37	9	35559262	35559262	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr9:35559262C>T	uc003zww.2	+	9	3636	c.3381C>T	c.(3379-3381)AAC>AAT	p.N1127N	RUSC2_uc010mkq.2_RNA|RUSC2_uc003zwx.3_Silent_p.N1127N	NM_014806	NP_055621	Q8N2Y8	RUSC2_HUMAN	RUN and SH3 domain containing 2	1127	RUN.					cytosol				ovary(1)	1			Lung(28;0.000837)|LUSC - Lung squamous cell carcinoma(32;0.00109)|STAD - Stomach adenocarcinoma(86;0.194)			ACCTCTATAACCACGAAGGTA	0.478													4	41					0	0	0.000602214	0	0
LOC442421	442421	broad.mit.edu	37	9	66499794	66499794	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr9:66499794C>T	uc004aee.1	+	1	604	c.604C>T	c.(604-606)CGC>TGC	p.R202C	LOC442421_uc004aed.1_RNA					Homo sapiens hypothetical LOC442421, mRNA (cDNA clone IMAGE:40031134).												0						GTGCAAGTCGCGCAAGGAGCA	0.587													7	42					0	0	0.00136819	0	0
OR13C4	138804	broad.mit.edu	37	9	107288981	107288981	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr9:107288981C>T	uc011lvn.1	-	1	510	c.510G>A	c.(508-510)GGG>GGA	p.G170G		NM_001001919	NP_001001919	Q8NGS5	O13C4_HUMAN	olfactory receptor, family 13, subfamily C,	170	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TAATATTGTTCCCACAGAAAG	0.383													5	62					0	0	0.000602214	0	0
DBC1	1620	broad.mit.edu	37	9	121929766	121929766	+	Silent	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr9:121929766G>A	uc004bkc.2	-	8	2338	c.1882C>T	c.(1882-1884)CTA>TTA	p.L628L		NM_014618	NP_055433	O60477	DBC1_HUMAN	deleted in bladder cancer 1 precursor	628					cell cycle arrest|cell death	cytoplasm	protein binding			skin(3)|ovary(2)|central_nervous_system(2)|large_intestine(1)	8						TTTCGCAGTAGGGTAGGTAGC	0.537													16	99					0	0	0.000422831	0	0
OR1Q1	158131	broad.mit.edu	37	9	125377721	125377721	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr9:125377721G>A	uc011lyy.1	+	1	705	c.705G>A	c.(703-705)TGG>TGA	p.W235*		NM_012364	NP_036496	Q15612	OR1Q1_HUMAN	olfactory receptor, family 1, subfamily Q,	235	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						AGGGCAGGTGGAAAACCTTTT	0.552													14	70					0	0	0.00185496	0	0
PPP6C	5537	broad.mit.edu	37	9	127912080	127912080	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr9:127912080G>A	uc004bpg.3	-	7	1011	c.790C>T	c.(790-792)CGT>TGT	p.R264C	PPP6C_uc010mwv.2_Missense_Mutation_p.R301C|PPP6C_uc010mww.2_Missense_Mutation_p.R242C|PPP6C_uc011lzr.1_Missense_Mutation_p.R117C	NM_002721	NP_002712	O00743	PPP6_HUMAN	protein phosphatase 6, catalytic subunit isoform	264					G1/S transition of mitotic cell cycle|protein dephosphorylation	cytosol	metal ion binding|protein binding|protein serine/threonine phosphatase activity			ovary(1)|skin(1)	2						TTTCCACAACGATAGCAGTAA	0.403													5	48					0	0	0.000602214	0	0
ANGPTL2	23452	broad.mit.edu	37	9	129870958	129870958	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr9:129870958C>T	uc004bqr.1	-	2	553	c.53G>A	c.(52-54)GGA>GAA	p.G18E	RALGPS1_uc004bqo.1_Intron|RALGPS1_uc011mab.1_Intron|RALGPS1_uc011mac.1_Intron|RALGPS1_uc004bqq.3_Intron|ANGPTL2_uc010mxg.1_Intron	NM_012098	NP_036230	Q9UKU9	ANGL2_HUMAN	angiopoietin-like 2 precursor	18					multicellular organismal development|signal transduction	extracellular space	receptor binding				0						TGCAACAGCTCCCATGGCAGC	0.547													6	26					0	0	0.00198382	0	0
ARRDC1	92714	broad.mit.edu	37	9	140508858	140508859	+	Silent	DNP	CC	TT	TT	rs113768660		TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr9:140508858_140508859CC>TT	uc004cns.2	+	6	800_801	c.726_727CC>TT	c.(724-729)ATCCTG>ATTTTG	p.242_243IL>IL	ARRDC1_uc004cnt.2_Silent_p.117_118IL>IL|ARRDC1_uc004cnu.2_RNA|ARRDC1_uc004cnv.2_Silent_p.222_223IL>IL|ARRDC1_uc004cnw.2_Silent_p.117_118IL>IL|ARRDC1_uc004cnp.1_Silent_p.242_243IL>IL|ARRDC1_uc004cnq.1_Silent_p.224_225IL>IL|ARRDC1_uc011mfb.1_Silent_p.117_118IL>IL|ARRDC1_uc004cnx.1_Silent_p.117_118IL>IL|ARRDC1_uc004cny.2_RNA	NM_152285	NP_689498	Q8N5I2	ARRD1_HUMAN	arrestin domain containing 1	242_243											0	all_cancers(76;0.106)			OV - Ovarian serous cystadenocarcinoma(145;0.000273)|Epithelial(140;0.000464)		ACGAGCAGATCCTGGTGCCTGC	0.658													10	68					0	0	6.4e-05	0	0
FRMPD4	9758	broad.mit.edu	37	X	12736900	12736900	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chrX:12736900G>A	uc004cuz.1	+	16	4461	c.3955G>A	c.(3955-3957)GAA>AAA	p.E1319K	FRMPD4_uc011mij.1_Missense_Mutation_p.E1311K	NM_014728	NP_055543	Q14CM0	FRPD4_HUMAN	FERM and PDZ domain containing 4	1319				Missing: Abolishes the interaction with DLG1, DLG2, DLG3 and DLG4/PSD95. Reduces protein localization to dendritic spines.	positive regulation of synapse structural plasticity	cytoskeleton|dendritic spine	phosphatidylinositol-4,5-bisphosphate binding|protein binding			central_nervous_system(5)|ovary(3)|skin(2)|large_intestine(1)|lung(1)|pancreas(1)	13						CAAGATTAAGGAAACCACAGG	0.453													15	42					0	0	0.000308642	0	0
TLR7	51284	broad.mit.edu	37	X	12906163	12906163	+	Missense_Mutation	SNP	T	C	C			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chrX:12906163T>C	uc004cvc.2	+	3	2675	c.2536T>C	c.(2536-2538)TCC>CCC	p.S846P		NM_016562	NP_057646	Q9NYK1	TLR7_HUMAN	toll-like receptor 7 precursor	846	Helical; (Potential).				cellular response to mechanical stimulus|defense response to virus|I-kappaB phosphorylation|inflammatory response|innate immune response|positive regulation of chemokine production|positive regulation of interferon-alpha biosynthetic process|positive regulation of interferon-beta biosynthetic process|positive regulation of interferon-gamma biosynthetic process|positive regulation of interleukin-8 biosynthetic process|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus	early phagosome|endoplasmic reticulum membrane|endosome membrane|integral to membrane|lysosome|plasma membrane	double-stranded RNA binding|single-stranded RNA binding|siRNA binding|transmembrane receptor activity			ovary(2)|lung(2)|breast(1)	5					Imiquimod(DB00724)	GTTCTCACTTTCCATATCTGT	0.443													15	63					0	0	0.000422831	0	0
HEPH	9843	broad.mit.edu	37	X	65409626	65409626	+	Silent	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chrX:65409626C>T	uc011moz.1	+	6	978	c.918C>T	c.(916-918)GTC>GTT	p.V306V	HEPH_uc004dwn.2_Silent_p.V306V|HEPH_uc004dwo.2_Silent_p.V36V|HEPH_uc010nkr.2_Silent_p.V306V|HEPH_uc011mpa.1_Silent_p.V306V	NM_138737	NP_620074	Q9BQS7	HEPH_HUMAN	hephaestin isoform a	303	Extracellular (Potential).|Plastocyanin-like 2.				cellular iron ion homeostasis|copper ion transport|transmembrane transport	integral to membrane|plasma membrane	copper ion binding|oxidoreductase activity	p.A306V(1)		lung(5)|ovary(4)	9						AAATTGATGTCCACACAGCAT	0.478													7	16					0	0	0.00198382	0	0
BRWD3	254065	broad.mit.edu	37	X	79999689	79999689	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chrX:79999689G>A	uc004edt.2	-	8	918	c.655C>T	c.(655-657)CGT>TGT	p.R219C	BRWD3_uc004edo.2_5'UTR|BRWD3_uc004edp.2_Missense_Mutation_p.R48C|BRWD3_uc004edq.2_5'UTR|BRWD3_uc010nmj.1_5'UTR|BRWD3_uc004edr.2_5'UTR|BRWD3_uc004eds.2_5'UTR|BRWD3_uc004edu.2_5'UTR|BRWD3_uc004edv.2_5'UTR|BRWD3_uc004edw.2_5'UTR|BRWD3_uc004edx.2_5'UTR|BRWD3_uc004edy.2_5'UTR|BRWD3_uc004edz.2_5'UTR|BRWD3_uc004eea.2_5'UTR|BRWD3_uc004eeb.2_Intron	NM_153252	NP_694984	Q6RI45	BRWD3_HUMAN	bromodomain and WD repeat domain containing 3	219	WD 2.									ovary(4)	4						GAGTGTCCACGAAGTGTAGCA	0.403													11	36					0	0	0.00185496	0	0
SYTL4	94121	broad.mit.edu	37	X	99956480	99956480	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chrX:99956480C>T	uc004egd.3	-	5	656	c.300G>A	c.(298-300)TGG>TGA	p.W100*	SYTL4_uc010nnc.2_Nonsense_Mutation_p.W100*|SYTL4_uc004ege.3_Nonsense_Mutation_p.W100*|SYTL4_uc004egf.3_Nonsense_Mutation_p.W100*|SYTL4_uc004egg.3_Nonsense_Mutation_p.W100*	NM_080737	NP_542775	Q96C24	SYTL4_HUMAN	synaptotagmin-like 4	100	RabBD.|FYVE-type.				exocytosis|intracellular protein transport	extrinsic to membrane|plasma membrane|synaptic vesicle|transport vesicle membrane	neurexin binding|phospholipid binding|Rab GTPase binding|transporter activity|zinc ion binding			ovary(2)	2					Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	CCTTGCACCTCCAGGTACCAT	0.547													13	32					0	0	0.000422831	0	0
IL1RAPL2	26280	broad.mit.edu	37	X	104961396	104961396	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chrX:104961396G>A	uc004elz.1	+	7	1565	c.809G>A	c.(808-810)GGA>GAA	p.G270E		NM_017416	NP_059112	Q9NP60	IRPL2_HUMAN	interleukin 1 receptor accessory protein-like 2	270	Ig-like C2-type 3.|Extracellular (Potential).				central nervous system development|innate immune response	integral to membrane	interleukin-1, Type II, blocking receptor activity			breast(2)|ovary(1)	3						GCATTCTTCGGATTCAGTGGA	0.433													15	55					0	0	0.000308642	0	0
LUZP4	51213	broad.mit.edu	37	X	114540930	114540930	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chrX:114540930G>A	uc004eqa.2	+	4	537	c.503G>A	c.(502-504)AGA>AAA	p.R168K	LUZP4_uc004eqb.2_Missense_Mutation_p.R86K	NM_016383	NP_057467	Q9P127	LUZP4_HUMAN	leucine zipper protein 4	168						nucleus				ovary(2)	2						CACTTAGAGAGATCTCTTTCT	0.443													16	43					0	0	0.000308642	0	0
FAM70A	55026	broad.mit.edu	37	X	119438286	119438286	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chrX:119438286G>A	uc004eso.3	-	2	346	c.119C>T	c.(118-120)TCC>TTC	p.S40F	FAM70A_uc004esp.3_Missense_Mutation_p.S40F|FAM70A_uc010nqo.2_Missense_Mutation_p.S40F	NM_017938	NP_060408	Q5JRV8	FA70A_HUMAN	hypothetical protein LOC55026 isoform 1	40	Helical; (Potential).					integral to membrane				lung(1)|breast(1)	2						AATTAACACGGACACAATAAG	0.443													12	37					0	0	0.00136819	0	0
NLGN4Y	22829	broad.mit.edu	37	Y	16953030	16953030	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chrY:16953030C>T	uc004ftg.2	+	6	2591	c.2339C>T	c.(2338-2340)ACC>ATC	p.T780I	NLGN4Y_uc004fte.2_Missense_Mutation_p.T612I|NLGN4Y_uc011nas.1_Missense_Mutation_p.T800I|NLGN4Y_uc004ftf.2_Missense_Mutation_p.T473I|NLGN4Y_uc004fth.2_Missense_Mutation_p.T780I	NM_014893	NP_055708	Q8NFZ3	NLGNY_HUMAN	neuroligin 4, Y-linked isoform 1	780	Cytoplasmic (Potential).				brainstem development|cell adhesion|cerebellum development|male courtship behavior|positive regulation of organ growth|social behavior|synapse assembly|territorial aggressive behavior|vocalization behavior	cell surface|integral to plasma membrane|synapse	neurexin binding|receptor activity				0						AACACCATCACCATGATTCCA	0.522													12	34					0	0	0.000308642	0	0
ADAM6	8755	broad.mit.edu	37	14	106774086	106774087	+	Splice_Site	INS	-	AGTAATACACGGCA	AGTAATACACGGCA			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr14:106774086_106774087insAGTAATACACGGCA	uc010tyt.1	-	430		c.15674_splice	c.e430+1							Parts of antibodies, mostly variable regions.												0						GCCTCTTGCACGTGTCCTCAGC	0.550													4	4	---	---	---	---					
MIR663B	100302269	broad.mit.edu	37	2	133014651	133014652	+	RNA	INS	-	C	C	rs150907057		TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr2:133014651_133014652insC	hsa-mir-663b|MI0006336	-			c.2_3insC			NCRNA00164_uc002ttj.3_Intron																	0						GGCCCTCGGCACCACCGAGACC	0.678													3	6	---	---	---	---					
MYO18B	84700	broad.mit.edu	37	22	26317359	26317360	+	Frame_Shift_Ins	INS	-	AA	AA			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr22:26317359_26317360insAA	uc003abz.1	+	34	5750_5751	c.5500_5501insAA	c.(5500-5502)GAGfs	p.E1834fs	MYO18B_uc003aca.1_Frame_Shift_Ins_p.E1715fs|MYO18B_uc010guy.1_Frame_Shift_Ins_p.E1716fs|MYO18B_uc010guz.1_Frame_Shift_Ins_p.E1714fs|MYO18B_uc011aka.1_Frame_Shift_Ins_p.E988fs|MYO18B_uc011akb.1_Frame_Shift_Ins_p.E1347fs	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	1834	Tail.|Potential.					nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						GGAGGAGCTGGAGAAAGTGCAC	0.574													2	4	---	---	---	---					
MBOAT1	154141	broad.mit.edu	37	6	20102606	20102606	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr6:20102606delT	uc003ncx.1	-	13	1604	c.1399delA	c.(1399-1401)ATAfs	p.I467fs	MBOAT1_uc011dji.1_Frame_Shift_Del_p.I318fs	NM_001080480	NP_001073949	Q6ZNC8	MBOA1_HUMAN	membrane bound O-acyltransferase domain	467	Helical; (Potential).				phospholipid biosynthetic process	integral to membrane	acyltransferase activity				0	all_cancers(95;0.244)|Breast(50;0.0379)|Ovarian(93;0.0473)|all_epithelial(95;0.109)		OV - Ovarian serous cystadenocarcinoma(7;0.00392)|all cancers(50;0.0117)|Epithelial(50;0.0454)			AATAGTATTATCAGGAGACTT	0.353													9	90	---	---	---	---					
VCP	7415	broad.mit.edu	37	9	35059646	35059647	+	Frame_Shift_Ins	INS	-	T	T			TCGA-BF-A1PX-01A-12D-A19A-08	TCGA-BF-A1PX-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed7006f-6ea1-4251-b6a2-17919eae8030	c341afa8-58ab-493f-a0fd-4d44754effff	g.chr9:35059646_35059647insT	uc003zvy.2	-	14	2236_2237	c.1847_1848insA	c.(1846-1848)AATfs	p.N616fs	VCP_uc003zvz.2_RNA|VCP_uc010mkh.1_Frame_Shift_Ins_p.N285fs|VCP_uc010mki.1_Frame_Shift_Ins_p.N571fs	NM_007126	NP_009057	P55072	TERA_HUMAN	valosin-containing protein	616					activation of caspase activity|double-strand break repair|endoplasmic reticulum unfolded protein response|ER-associated protein catabolic process|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|protein ubiquitination|retrograde protein transport, ER to cytosol	cytosol|endoplasmic reticulum|microsome|nucleus|proteasome complex	ATP binding|ATPase activity|lipid binding|polyubiquitin binding|protein domain specific binding|protein phosphatase binding			upper_aerodigestive_tract(1)	1			LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)			TGATGAACACATTTTTTTTTGT	0.515													7	83	---	---	---	---					
