Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
KLHL17	339451	broad.mit.edu	37	1	898107	898107	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:898107C>T	uc001aca.1	+	6	959	c.852C>T	c.(850-852)CCC>CCT	p.P284P	KLHL17_uc001acc.1_RNA|KLHL17_uc010nyb.1_Silent_p.P7P	NM_198317	NP_938073	Q6TDP4	KLH17_HUMAN	kelch-like 17	284	BACK.				actin cytoskeleton organization	actin cytoskeleton|cell junction|postsynaptic density|postsynaptic membrane	protein complex scaffold				0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;9.48e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Lung SC(97;0.217)		UCEC - Uterine corpus endometrioid carcinoma (11;0.00459)|Epithelial(90;1.52e-38)|OV - Ovarian serous cystadenocarcinoma(86;5.59e-23)|Colorectal(212;0.000155)|COAD - Colon adenocarcinoma(227;0.000193)|BRCA - Breast invasive adenocarcinoma(365;0.000469)|Kidney(185;0.00227)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.199)		TGCGGCTGCCCTTGCTGAGCC	0.657													5	20					0	0	0.000602214	0	0
PRDM16	63976	broad.mit.edu	37	1	3334463	3334463	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:3334463C>T	uc001akf.2	+	11	2843	c.2763C>T	c.(2761-2763)TCC>TCT	p.S921S	PRDM16_uc001akc.2_Silent_p.S920S|PRDM16_uc001akd.2_Silent_p.S920S|PRDM16_uc001ake.2_Silent_p.S921S|PRDM16_uc009vlh.2_Silent_p.S621S	NM_022114	NP_071397	Q9HAZ2	PRD16_HUMAN	PR domain containing 16 isoform 1	921	Mediates interaction with SKI and regulation of TGF-beta signaling.|Interaction with CTBP1 and CTBP2 (By similarity).				brown fat cell differentiation|negative regulation of granulocyte differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of cellular respiration|transcription, DNA-dependent	transcriptional repressor complex	protein binding|sequence-specific DNA binding|transcription coactivator activity|zinc ion binding			lung(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7	all_cancers(77;0.00208)|all_epithelial(69;0.000732)|Ovarian(185;0.0634)|Lung NSC(156;0.109)|all_lung(157;0.111)	all_epithelial(116;2.03e-21)|all_lung(118;7.55e-09)|Lung NSC(185;1.28e-06)|Breast(487;0.000792)|Renal(390;0.00137)|Hepatocellular(190;0.00515)|Myeloproliferative disorder(586;0.0267)|Ovarian(437;0.0365)|Lung SC(97;0.114)|Medulloblastoma(700;0.134)		Epithelial(90;5.59e-35)|OV - Ovarian serous cystadenocarcinoma(86;1.99e-20)|GBM - Glioblastoma multiforme(42;3.72e-11)|Colorectal(212;0.000425)|BRCA - Breast invasive adenocarcinoma(365;0.000946)|COAD - Colon adenocarcinoma(227;0.000968)|Kidney(185;0.00155)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0175)|Lung(427;0.137)		CGGGCAGCTCCCTGCAGCCCC	0.602			T	EVI1	MDS|AML								14	58					0	0	0.000308642	0	0
PLEKHG5	57449	broad.mit.edu	37	1	6530406	6530406	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:6530406C>T	uc001ano.1	-	17	1959	c.1858G>A	c.(1858-1860)GAA>AAA	p.E620K	PLEKHG5_uc001ann.1_Missense_Mutation_p.E601K|PLEKHG5_uc001anq.1_Missense_Mutation_p.E641K|PLEKHG5_uc001anp.1_Missense_Mutation_p.E641K|PLEKHG5_uc001anj.1_Missense_Mutation_p.E125K|PLEKHG5_uc009vma.1_Missense_Mutation_p.E404K|PLEKHG5_uc010nzr.1_Missense_Mutation_p.E633K|PLEKHG5_uc001ank.1_Missense_Mutation_p.E564K|PLEKHG5_uc009vmb.1_Missense_Mutation_p.E564K|PLEKHG5_uc001anl.1_Missense_Mutation_p.E564K|PLEKHG5_uc001anm.1_Missense_Mutation_p.E564K|PLEKHG5_uc001anr.1_5'Flank	NM_001042663	NP_001036128	O94827	PKHG5_HUMAN	pleckstrin homology domain containing family G	620					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|perinuclear region of cytoplasm	Rho guanyl-nucleotide exchange factor activity|signal transducer activity			liver(1)	1	Ovarian(185;0.02)|all_lung(157;0.154)	all_cancers(23;1.7e-35)|all_epithelial(116;2.78e-22)|all_lung(118;7.57e-07)|Lung NSC(185;4.26e-06)|Colorectal(325;4.47e-05)|all_hematologic(16;0.00014)|Breast(487;0.000688)|Renal(390;0.0007)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0448)		Epithelial(90;5.51e-35)|GBM - Glioblastoma multiforme(13;3.57e-27)|Colorectal(212;6.23e-08)|COAD - Colon adenocarcinoma(227;1.33e-05)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000894)|BRCA - Breast invasive adenocarcinoma(365;0.00107)|STAD - Stomach adenocarcinoma(132;0.00159)|READ - Rectum adenocarcinoma(331;0.0419)		TGCAGAAATTCCTTCAGGAGC	0.637													4	21					0	0	0.00024832	0	0
AADACL3	126767	broad.mit.edu	37	1	12785497	12785497	+	Missense_Mutation	SNP	T	G	G			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:12785497T>G	uc009vnn.1	+	4	820	c.587T>G	c.(586-588)TTT>TGT	p.F196C	AADACL3_uc001aug.1_Missense_Mutation_p.F126C	NM_001103170	NP_001096640	Q5VUY0	ADCL3_HUMAN	arylacetamide deacetylase-like 3 isoform 1	196							hydrolase activity				0	Ovarian(185;0.249)	Lung NSC(185;8.27e-05)|all_lung(284;9.47e-05)|Renal(390;0.000147)|Colorectal(325;0.000583)|Breast(348;0.000596)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.13e-06)|COAD - Colon adenocarcinoma(227;0.000274)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.00217)|KIRC - Kidney renal clear cell carcinoma(229;0.00579)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0649)		TGCTACTGTTTTTTTCAAAAC	0.468													46	125					0	0	0.000781405	0	0
PRAMEF1	65121	broad.mit.edu	37	1	12854208	12854208	+	Missense_Mutation	SNP	C	G	G			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:12854208C>G	uc001auj.1	+	3	535	c.432C>G	c.(430-432)CAC>CAG	p.H144Q		NM_023013	NP_075389	O95521	PRAM1_HUMAN	PRAME family member 1	144											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		TGGGAGAGCACCAGCCCTTAA	0.537													22	186					0	0	0.000227799	0	0
PRAMEF11	440560	broad.mit.edu	37	1	12887606	12887606	+	Missense_Mutation	SNP	C	G	G	rs58074988		TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:12887606C>G	uc001auk.2	-	3	447	c.251G>C	c.(250-252)TGC>TCC	p.C84S		NM_001146344	NP_001139816	O60813	PRA11_HUMAN	PRAME family member 11	84											0						ATTGAGGAAGCACCCATGGGC	0.483													8	341					0	0	0.000673444	0	0
PRAMEF2	65122	broad.mit.edu	37	1	12918976	12918976	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:12918976C>T	uc001aum.1	+	2	199	c.112C>T	c.(112-114)CCA>TCA	p.P38S		NM_023014	NP_075390	O60811	PRAM2_HUMAN	PRAME family member 2	38											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;2.4e-06)|Kidney(185;4.89e-05)|COAD - Colon adenocarcinoma(227;0.000152)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		GCTCTATCTCCCACTCTTCAG	0.617													11	89					0	0	0.000151284	0	0
PRAMEF2	65122	broad.mit.edu	37	1	12919929	12919929	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:12919929G>A	uc001aum.1	+	3	756	c.669G>A	c.(667-669)AAG>AAA	p.K223K		NM_023014	NP_075390	O60811	PRAM2_HUMAN	PRAME family member 2	223											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;2.4e-06)|Kidney(185;4.89e-05)|COAD - Colon adenocarcinoma(227;0.000152)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		TGATAAGAAAGCTTTATTGTT	0.388													30	164					0	0	0.000227799	0	0
FBXO42	54455	broad.mit.edu	37	1	16577258	16577258	+	Silent	SNP	T	C	C			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:16577258T>C	uc001ayg.2	-	10	2277	c.2061A>G	c.(2059-2061)GAA>GAG	p.E687E	FBXO42_uc001aye.3_Silent_p.E405E|FBXO42_uc001ayf.2_Silent_p.E594E	NM_018994	NP_061867	Q6P3S6	FBX42_HUMAN	F-box protein 42	687										upper_aerodigestive_tract(1)|skin(1)	2		Colorectal(325;0.000147)|Renal(390;0.00145)|Breast(348;0.00224)|Lung NSC(340;0.00475)|all_lung(284;0.00671)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0646)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0193)|Colorectal(212;3.16e-07)|COAD - Colon adenocarcinoma(227;1.46e-05)|BRCA - Breast invasive adenocarcinoma(304;4.37e-05)|Kidney(64;0.000246)|KIRC - Kidney renal clear cell carcinoma(64;0.00336)|STAD - Stomach adenocarcinoma(313;0.0139)|READ - Rectum adenocarcinoma(331;0.0693)		ATATGATGAGTTCACCCCTGC	0.448													33	129					0	0	0.000814825	0	0
NBPF1	55672	broad.mit.edu	37	1	16913547	16913549	+	Missense_Mutation	TNP	GGG	TTT	TTT			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:16913547_16913549GGG>TTT	uc009vos.1	-	11	1662_1664	c.774_776CCC>AAA	c.(772-777)CTCCCA>CTAAAA	p.P259K	NBPF1_uc009vot.1_5'UTR|NBPF1_uc001ayz.1_5'UTR|NBPF1_uc010oce.1_Intron	NM_017940	NP_060410	Q3BBV0	NBPF1_HUMAN	hypothetical protein LOC55672	259	NBPF 1.					cytoplasm					0				UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		GAGGCTACCTGGGAGAATGTTTA	0.399													16	668					0	0	6.4e-05	0	0
NBPF1	55672	broad.mit.edu	37	1	16914222	16914224	+	Missense_Mutation	TNP	GGG	TTT	TTT			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:16914222_16914224GGG>TTT	uc009vos.1	-	10	1450_1452	c.562_564CCC>AAA	c.(562-564)CCC>AAA	p.P188K	NBPF1_uc009vot.1_5'Flank|NBPF1_uc001ayz.1_5'Flank|NBPF1_uc010oce.1_Intron	NM_017940	NP_060410	Q3BBV0	NBPF1_HUMAN	hypothetical protein LOC55672	188	NBPF 1.					cytoplasm					0				UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		AGTGTTACCTGGGGGCAGATGAT	0.443													12	604					0	0	6.4e-05	0	0
KLHDC7A	127707	broad.mit.edu	37	1	18808538	18808538	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:18808538C>T	uc001bax.2	+	1	1115	c.1063C>T	c.(1063-1065)CCC>TCC	p.P355S	KLHDC7A_uc009vpg.2_Missense_Mutation_p.P137S	NM_152375	NP_689588	Q5VTJ3	KLD7A_HUMAN	kelch domain containing 7A	355	Kelch 1.					integral to membrane				ovary(2)|upper_aerodigestive_tract(1)	3		Colorectal(325;3.46e-05)|all_lung(284;0.000152)|Lung NSC(340;0.000185)|Breast(348;0.00046)|Renal(390;0.000518)|Ovarian(437;0.0014)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00462)|BRCA - Breast invasive adenocarcinoma(304;1.41e-05)|Kidney(64;0.00017)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		AGGGCCGTGGCCCTCCACCCG	0.687													6	20					0	0	0.000157383	0	0
TAS1R2	80834	broad.mit.edu	37	1	19186034	19186034	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:19186034G>A	uc001bba.1	-	1	122	c.121C>T	c.(121-123)CTC>TTC	p.L41F		NM_152232	NP_689418	Q8TE23	TS1R2_HUMAN	taste receptor, type 1, member 2 precursor	41	Extracellular (Potential).				detection of chemical stimulus involved in sensory perception of sweet taste	plasma membrane	protein heterodimerization activity|taste receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Colorectal(325;3.46e-05)|all_lung(284;0.000321)|Lung NSC(340;0.000398)|Renal(390;0.000518)|Breast(348;0.000812)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00466)|BRCA - Breast invasive adenocarcinoma(304;3.56e-05)|Kidney(64;0.000177)|KIRC - Kidney renal clear cell carcinoma(64;0.00262)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)	Aspartame(DB00168)	TTGGCATGGAGGGAGAAGAGG	0.577													12	50					0	0	0.000219431	0	0
PLA2G2F	64600	broad.mit.edu	37	1	20474889	20474889	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:20474889C>T	uc009vpp.1	+	5	729	c.631C>T	c.(631-633)CCC>TCC	p.P211S		NM_022819	NP_073730	Q9BZM2	PA2GF_HUMAN	phospholipase A2, group IIF	168					lipid catabolic process|phospholipid metabolic process	extracellular region	calcium ion binding|phospholipase A2 activity			ovary(1)	1		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000247)|Lung NSC(340;0.000285)|Breast(348;0.000812)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.018)|COAD - Colon adenocarcinoma(152;1.13e-05)|BRCA - Breast invasive adenocarcinoma(304;8.01e-05)|Kidney(64;0.00017)|GBM - Glioblastoma multiforme(114;0.000524)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.198)		CCCCGCCCCTCCCTAGAGCCT	0.657													7	25					0	0	0.000442599	0	0
CNKSR1	10256	broad.mit.edu	37	1	26507371	26507371	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:26507371C>T	uc001bln.3	+	3	434	c.376C>T	c.(376-378)CTC>TTC	p.L126F	CNKSR1_uc010oex.1_RNA|CNKSR1_uc001blm.3_Missense_Mutation_p.L126F|CNKSR1_uc009vsd.2_5'UTR|CNKSR1_uc009vse.2_5'UTR|CNKSR1_uc001blo.2_5'UTR	NM_006314	NP_006305	Q969H4	CNKR1_HUMAN	connector enhancer of kinase suppressor of Ras	126	CRIC.				Rho protein signal transduction|transmembrane receptor protein tyrosine kinase signaling pathway	cell cortex|cell-cell junction	protein binding, bridging			lung(1)|kidney(1)	2		Colorectal(325;3.46e-05)|all_lung(284;0.000116)|Lung NSC(340;0.000154)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0133)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0298)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;2.72e-26)|Colorectal(126;1.24e-08)|COAD - Colon adenocarcinoma(152;9.31e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00072)|BRCA - Breast invasive adenocarcinoma(304;0.000959)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.00823)|READ - Rectum adenocarcinoma(331;0.0649)		TGACGCCCTCCTCTTCTGGCT	0.572													14	24					0	0	0.000566183	0	0
GPATCH3	63906	broad.mit.edu	37	1	27217608	27217608	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:27217608C>T	uc001bne.2	-	7	1500	c.1471G>A	c.(1471-1473)GAG>AAG	p.E491K	GPN2_uc001bnd.1_5'Flank|GPATCH3_uc009vsp.1_Missense_Mutation_p.E302K	NM_022078	NP_071361	Q96I76	GPTC3_HUMAN	G patch domain containing 3	491						intracellular	nucleic acid binding				0		all_cancers(24;1.29e-21)|all_epithelial(13;2.35e-19)|Colorectal(325;0.000147)|all_lung(284;0.00122)|Lung NSC(340;0.00128)|Breast(348;0.00131)|Renal(390;0.00211)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0707)|all_neural(195;0.0966)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Epithelial(14;3.97e-51)|OV - Ovarian serous cystadenocarcinoma(117;9.55e-30)|Colorectal(126;5.31e-09)|COAD - Colon adenocarcinoma(152;9.31e-07)|BRCA - Breast invasive adenocarcinoma(304;0.000513)|STAD - Stomach adenocarcinoma(196;0.000595)|KIRC - Kidney renal clear cell carcinoma(1967;0.00072)|READ - Rectum adenocarcinoma(331;0.0419)		AGCAGTGACTCCGTCTGGTCT	0.567													14	19					0	0	0.000422831	0	0
BAI2	576	broad.mit.edu	37	1	32205127	32205127	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:32205127G>A	uc001btn.2	-	15	2631	c.2277C>T	c.(2275-2277)CTC>CTT	p.L759L	BAI2_uc001btp.1_5'Flank|BAI2_uc010ogn.1_5'Flank|BAI2_uc010ogo.1_Silent_p.L401L|BAI2_uc010ogp.1_Silent_p.L692L|BAI2_uc010ogq.1_Silent_p.L759L|BAI2_uc001bto.2_Silent_p.L759L|BAI2_uc001btq.1_Silent_p.L692L|BAI2_uc010ogr.1_3'UTR	NM_001703	NP_001694	O60241	BAI2_HUMAN	brain-specific angiogenesis inhibitor 2	759	Extracellular (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(5)|breast(4)|ovary(2)|central_nervous_system(1)|skin(1)	13		Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0606)|all_neural(195;0.0837)|Breast(348;0.174)		STAD - Stomach adenocarcinoma(196;0.0557)		TGGGCAGGAAGAGGCGGTCCT	0.682													5	34					0	0	0.000602214	0	0
CSMD2	114784	broad.mit.edu	37	1	34164364	34164364	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:34164364G>A	uc001bxn.1	-	24	3823	c.3794C>T	c.(3793-3795)CCC>CTC	p.P1265L	CSMD2_uc001bxm.1_Missense_Mutation_p.P1305L|CSMD2_uc001bxo.1_Missense_Mutation_p.P178L	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	1265	Sushi 7.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				GACACAGGTGGGCAGAGGCCG	0.602													7	68					0	0	0.000274275	0	0
HIVEP3	59269	broad.mit.edu	37	1	42049495	42049495	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:42049495G>A	uc001cgz.3	-	4	2187	c.974C>T	c.(973-975)TCC>TTC	p.S325F	HIVEP3_uc001cha.3_Missense_Mutation_p.S325F|HIVEP3_uc001cgy.2_RNA	NM_024503	NP_078779	Q5T1R4	ZEP3_HUMAN	human immunodeficiency virus type I enhancer	325	Ser-rich.|No DNA binding activity or transactivation activity, but complete prevention of TRAF-dependent NF-Kappa-B activation; associates with TRAF2 and JUN (By similarity).				positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6	Ovarian(52;0.00769)|all_hematologic(146;0.109)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0367)				CTGGGACAGGGAACAGCGTTC	0.602													13	86					0	0	0.000151284	0	0
PTCH2	8643	broad.mit.edu	37	1	45292598	45292598	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:45292598C>T	uc010olf.1	-	17	2683	c.2671G>A	c.(2671-2673)GAC>AAC	p.D891N	PTCH2_uc010olg.1_Missense_Mutation_p.D589N	NM_003738	NP_003729	Q9Y6C5	PTC2_HUMAN	patched 2	891	Extracellular (Potential).				protein complex assembly|spermatogenesis	integral to plasma membrane	hedgehog receptor activity			lung(6)|breast(6)|central_nervous_system(3)|skin(2)|ovary(1)	18	Acute lymphoblastic leukemia(166;0.155)					CCCGTGGTGTCGTATTTGTCG	0.642									Basal_Cell_Nevus_syndrome				40	117					0	0	0.000781405	0	0
FAAH	2166	broad.mit.edu	37	1	46871413	46871413	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:46871413C>T	uc001cpu.2	+	5	814	c.732C>T	c.(730-732)TTC>TTT	p.F244F	FAAH_uc001cpv.2_RNA	NM_001441	NP_001432	O00519	FAAH1_HUMAN	fatty acid amide hydrolase	244	Cytoplasmic (By similarity).				fatty acid catabolic process	cytoplasm|cytoskeleton|endomembrane system|integral to membrane|organelle membrane	carbon-nitrogen ligase activity, with glutamine as amido-N-donor|fatty acid amide hydrolase activity			ovary(1)|breast(1)	2	Acute lymphoblastic leukemia(166;0.155)				Propofol(DB00818)|Thiopental(DB00599)	GCATCCGCTTCCCCTCCTCCT	0.617													11	37					0	0	0.000151284	0	0
TMEM59	9528	broad.mit.edu	37	1	54506432	54506432	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:54506432G>A	uc001cwp.2	-	6	954	c.704C>T	c.(703-705)TCT>TTT	p.S235F	TMEM59_uc001cwn.2_Missense_Mutation_p.S99F|TMEM59_uc001cwo.2_Missense_Mutation_p.S98F|TMEM59_uc001cwq.2_Missense_Mutation_p.S236F|TMEM59_uc001cwr.2_Missense_Mutation_p.S168F|TMEM59_uc001cws.1_Missense_Mutation_p.S247F	NM_004872	NP_004863	Q9BXS4	TMM59_HUMAN	thymic dendritic cell-derived factor 1	235	Extracellular (Potential).					Golgi membrane|integral to membrane					0						TACATACAGAGAGAGGCATCT	0.313													34	221					0	0	0.000953801	0	0
BSND	7809	broad.mit.edu	37	1	55473941	55473941	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:55473941G>A	uc001cye.2	+	4	846	c.603G>A	c.(601-603)CTG>CTA	p.L201L		NM_057176	NP_476517	Q8WZ55	BSND_HUMAN	barttin	201	Cytoplasmic (Potential).					basolateral plasma membrane|cytoplasm|integral to plasma membrane|protein complex				ovary(1)|skin(1)	2						AAGATGACCTGGACATGGACT	0.542													4	37					0	0	3.59834e-05	0	0
PRKAA2	5563	broad.mit.edu	37	1	57161680	57161680	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:57161680C>T	uc001cyk.3	+	6	707	c.636C>T	c.(634-636)CTC>CTT	p.L212L		NM_006252	NP_006243	P54646	AAPK2_HUMAN	AMP-activated protein kinase alpha 2 catalytic	212	Protein kinase.				carnitine shuttle|cell cycle arrest|cholesterol biosynthetic process|energy reserve metabolic process|fatty acid biosynthetic process|insulin receptor signaling pathway|regulation of fatty acid biosynthetic process|regulation of fatty acid oxidation	cytosol|nucleoplasm	ATP binding|metal ion binding			breast(4)|ovary(1)|stomach(1)	6						GTGGCACCCTCCCATTTGATG	0.423													38	270					0	0	0.000814825	0	0
C8A	731	broad.mit.edu	37	1	57341833	57341833	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:57341833G>A	uc001cyo.2	+	4	547	c.415G>A	c.(415-417)GAC>AAC	p.D139N		NM_000562	NP_000553	P07357	CO8A_HUMAN	complement component 8, alpha polypeptide	139	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular space|membrane attack complex				ovary(1)|central_nervous_system(1)|skin(1)	3						CATTGACGAAGACTGCAGCCA	0.522													5	28					0	0	0.000602214	0	0
KANK4	163782	broad.mit.edu	37	1	62739653	62739653	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:62739653C>T	uc001dah.3	-	3	1500	c.1123G>A	c.(1123-1125)GAG>AAG	p.E375K	KANK4_uc001dai.3_Intron|KANK4_uc001dag.3_5'Flank	NM_181712	NP_859063	Q5T7N3	KANK4_HUMAN	ankyrin repeat domain 38	375	Potential.									ovary(3)|skin(2)|lung(1)	6						TTGATTTCCTCTTCCTGCTGC	0.537													20	80					0	0	0.000175454	0	0
LEPR	3953	broad.mit.edu	37	1	66083825	66083825	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:66083825C>T	uc001dci.2	+	16	2593	c.2391C>T	c.(2389-2391)ATC>ATT	p.I797I	LEPR_uc001dcg.2_Silent_p.I797I|LEPR_uc001dch.2_Silent_p.I797I|LEPR_uc009waq.2_Intron|LEPR_uc001dcj.2_Silent_p.I797I|LEPR_uc001dck.2_Silent_p.I797I	NM_002303	NP_002294	P48357	LEPR_HUMAN	leptin receptor isoform 1	797	Extracellular (Potential).|Fibronectin type-III 4.				energy reserve metabolic process|multicellular organismal development	extracellular region|integral to membrane|plasma membrane	cytokine receptor activity			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(397;0.00722)|KIRC - Kidney renal clear cell carcinoma(1967;0.094)		AGTATTATATCCATGGTAAGT	0.264													24	68					0	0	0.000586117	0	0
LEPR	3953	broad.mit.edu	37	1	66087038	66087038	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:66087038G>A	uc001dci.2	+	18	2696	c.2494G>A	c.(2494-2496)GAT>AAT	p.D832N	LEPR_uc001dcg.2_Missense_Mutation_p.D832N|LEPR_uc001dch.2_Missense_Mutation_p.D832N|LEPR_uc009waq.2_Intron|LEPR_uc001dcj.2_Missense_Mutation_p.D832N|LEPR_uc001dck.2_Missense_Mutation_p.D832N	NM_002303	NP_002294	P48357	LEPR_HUMAN	leptin receptor isoform 1	832	Extracellular (Potential).				energy reserve metabolic process|multicellular organismal development	extracellular region|integral to membrane|plasma membrane	cytokine receptor activity			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(397;0.00722)|KIRC - Kidney renal clear cell carcinoma(1967;0.094)		TTTTTCAGATGATATTGAAAA	0.289													34	37					0	0	0.000814825	0	0
LRRC7	57554	broad.mit.edu	37	1	70503885	70503885	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:70503885C>T	uc001dep.2	+	19	2294	c.2264C>T	c.(2263-2265)CCT>CTT	p.P755L	LRRC7_uc009wbg.2_Missense_Mutation_p.P39L|LRRC7_uc001deq.2_5'UTR	NM_020794	NP_065845	Q96NW7	LRRC7_HUMAN	leucine rich repeat containing 7	755						centrosome|focal adhesion|nucleolus	protein binding			ovary(9)|breast(2)|central_nervous_system(2)|liver(1)	14						CCACAGCGTCCTGACCGGCTG	0.517													61	104					0	0	0.000781405	0	0
SLC44A5	204962	broad.mit.edu	37	1	75684344	75684344	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:75684344G>A	uc001dgu.2	-	17	1504	c.1360C>T	c.(1360-1362)CCT>TCT	p.P454S	SLC44A5_uc001dgt.2_Missense_Mutation_p.P454S|SLC44A5_uc001dgs.2_Missense_Mutation_p.P412S|SLC44A5_uc001dgr.2_Missense_Mutation_p.P412S|SLC44A5_uc010oqz.1_Missense_Mutation_p.P493S|SLC44A5_uc010ora.1_Missense_Mutation_p.P448S|SLC44A5_uc010orb.1_Missense_Mutation_p.P324S	NM_152697	NP_689910	Q8NCS7	CTL5_HUMAN	solute carrier family 44, member 5 isoform A	454	Cytoplasmic (Potential).					integral to membrane|plasma membrane	choline transmembrane transporter activity			ovary(2)|skin(2)	4						TGGAAGGTAGGGATGTACTGA	0.413													6	42					0	0	3.59834e-05	0	0
ST6GALNAC3	256435	broad.mit.edu	37	1	76877767	76877767	+	Missense_Mutation	SNP	T	G	G			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:76877767T>G	uc001dhh.2	+	3	451	c.288T>G	c.(286-288)AAT>AAG	p.N96K	ST6GALNAC3_uc001dhg.3_Missense_Mutation_p.N96K|ST6GALNAC3_uc010orh.1_Missense_Mutation_p.N31K	NM_152996	NP_694541	Q8NDV1	SIA7C_HUMAN	sialyltransferase 7C isoform 1	96	Lumenal (Potential).				protein glycosylation	integral to Golgi membrane	sialyltransferase activity			ovary(3)|skin(2)	5						AGGTGGGAAATGAGATAGATC	0.473													4	16					0	0	0.000602214	0	0
SYDE2	84144	broad.mit.edu	37	1	85656400	85656401	+	Nonsense_Mutation	DNP	CC	AA	AA			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:85656400_85656401CC>AA	uc009wcm.2	-	2	829_830	c.780_781GG>TT	c.(778-783)AAGGGA>AATTGA	p.260_261KG>N*	SYDE2_uc001dku.3_Nonsense_Mutation_p.260_261KG>N*	NM_032184	NP_115560	Q5VT97	SYDE2_HUMAN	synapse defective 1, Rho GTPase, homolog 2	260_261					activation of Rho GTPase activity|small GTPase mediated signal transduction	cytosol	Rho GTPase activator activity			ovary(1)|central_nervous_system(1)	2				all cancers(265;0.0126)|Epithelial(280;0.0336)		AGTTCTCTTCCCTTCATTGAAG	0.361													12	351					0	0	6.4e-05	0	0
CLCA1	1179	broad.mit.edu	37	1	86961274	86961274	+	Missense_Mutation	SNP	G	A	A	rs148962584	byFrequency	TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:86961274G>A	uc001dlt.2	+	12	2158	c.2029G>A	c.(2029-2031)GCT>ACT	p.A677T		NM_001285	NP_001276	A8K7I4	CLCA1_HUMAN	chloride channel accessory 1 precursor	677					calcium ion transport	extracellular space|integral to plasma membrane	chloride channel activity			ovary(1)	1		Lung NSC(277;0.239)		all cancers(265;0.0249)|Epithelial(280;0.0476)		AAAAGTGCGGGCTCTGGGAGG	0.453													10	36					0	0	0.000673444	0	0
EPHX4	253152	broad.mit.edu	37	1	92528792	92528792	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:92528792G>A	uc001don.2	+	7	1142	c.1038G>A	c.(1036-1038)GTG>GTA	p.V346V		NM_173567	NP_775838	Q8IUS5	EPHX4_HUMAN	abhydrolase domain containing 7	346						integral to membrane	hydrolase activity			central_nervous_system(1)	1						CTGACATAGTGAACAAATTGA	0.318													23	82					0	0	0.000720815	0	0
ABCA4	24	broad.mit.edu	37	1	94476861	94476861	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:94476861G>A	uc001dqh.2	-	39	5645	c.5541C>T	c.(5539-5541)GAC>GAT	p.D1847D	ABCA4_uc001dqi.1_5'Flank|ABCA4_uc009wdp.1_Silent_p.D115D	NM_000350	NP_000341	P78363	ABCA4_HUMAN	ATP-binding cassette, sub-family A member 4	1847	Helical; (Potential).				phototransduction, visible light|visual perception	integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)|skin(4)|central_nervous_system(2)|upper_aerodigestive_tract(1)|breast(1)	12		all_lung(203;0.000757)|Lung NSC(277;0.00335)		all cancers(265;0.00432)|GBM - Glioblastoma multiforme(16;0.00715)|Epithelial(280;0.171)		TCAGTGCAAGGTCAATGAGGC	0.602													9	69					0	0	0.000274275	0	0
ARHGAP29	9411	broad.mit.edu	37	1	94650952	94650952	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:94650952C>T	uc001dqj.3	-	17	2235	c.1866G>A	c.(1864-1866)ACG>ACA	p.T622T	ARHGAP29_uc009wdq.1_RNA|ARHGAP29_uc001dqk.2_Silent_p.T188T	NM_004815	NP_004806	Q52LW3	RHG29_HUMAN	PTPL1-associated RhoGAP 1	622	Phorbol-ester/DAG-type.				Rho protein signal transduction	cytosol	metal ion binding|Rho GTPase activator activity			breast(4)|skin(3)|lung(2)|upper_aerodigestive_tract(1)|ovary(1)	11		all_lung(203;0.000732)|Lung NSC(277;0.00328)		all cancers(265;0.0187)|Epithelial(280;0.159)		CCCTACATTTCGTGGGGGATC	0.398													7	85					0	0	0.000157383	0	0
ARHGAP29	9411	broad.mit.edu	37	1	94670672	94670672	+	Silent	SNP	A	C	C			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:94670672A>C	uc001dqj.3	-	7	1011	c.642T>G	c.(640-642)ACT>ACG	p.T214T	ARHGAP29_uc009wdq.1_RNA|ARHGAP29_uc001dql.2_Silent_p.T214T	NM_004815	NP_004806	Q52LW3	RHG29_HUMAN	PTPL1-associated RhoGAP 1	214					Rho protein signal transduction	cytosol	metal ion binding|Rho GTPase activator activity			breast(4)|skin(3)|lung(2)|upper_aerodigestive_tract(1)|ovary(1)	11		all_lung(203;0.000732)|Lung NSC(277;0.00328)		all cancers(265;0.0187)|Epithelial(280;0.159)		ATTTTGACCAAGTTTTAGCAT	0.328													13	88					0	0	0.000219431	0	0
PALMD	54873	broad.mit.edu	37	1	100152699	100152699	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:100152699G>A	uc001dsg.2	+	6	911	c.468G>A	c.(466-468)AGG>AGA	p.R156R	PALMD_uc001dsf.2_Silent_p.R156R	NM_017734	NP_060204	Q9NP74	PALMD_HUMAN	palmdelphin	156					regulation of cell shape	cytoplasm|membrane				ovary(2)|pancreas(1)	3		all_epithelial(167;0.000813)|all_lung(203;0.0214)|Lung NSC(277;0.0216)		Epithelial(280;0.067)|all cancers(265;0.117)|COAD - Colon adenocarcinoma(174;0.142)|Lung(183;0.201)		CTAGGTTAAGGAAGGAGATAA	0.318													16	70					0	0	0.000229342	0	0
OLFM3	118427	broad.mit.edu	37	1	102312496	102312496	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:102312496G>A	uc001duf.2	-	1	105	c.34C>T	c.(34-36)CTT>TTT	p.L12F	OLFM3_uc001dug.2_Intron|OLFM3_uc001duh.2_Intron|OLFM3_uc001dui.2_Intron|OLFM3_uc001duj.2_Intron|OLFM3_uc001due.2_RNA	NM_058170	NP_477518	Q96PB7	NOE3_HUMAN	olfactomedin 3	12						extracellular region				ovary(2)|skin(1)	3		all_epithelial(167;1.87e-06)|all_lung(203;8.12e-05)|Lung NSC(277;0.000189)		all cancers(265;0.0843)|Epithelial(280;0.0921)|COAD - Colon adenocarcinoma(174;0.145)		ATGGTACTAAGCACAGCGCCA	0.532													14	61					0	0	0.00074312	0	0
GPSM2	29899	broad.mit.edu	37	1	109428147	109428148	+	Nonsense_Mutation	DNP	GG	TT	TT			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:109428147_109428148GG>TT	uc010ovc.1	+	2	499_500	c.3_4GG>TT	c.(1-6)ATGGAG>ATTTAG	p.1_2ME>I*	AKNAD1_uc010ovb.1_Intron|GPSM2_uc010ovd.1_Nonsense_Mutation_p.1_2ME>I*|GPSM2_uc010ove.1_Nonsense_Mutation_p.1_2ME>I*	NM_013296	NP_037428	P81274	GPSM2_HUMAN	LGN protein	1_2					G-protein coupled receptor protein signaling pathway	cell cortex|nucleus	GTPase activator activity|identical protein binding			central_nervous_system(1)	1		all_epithelial(167;7.64e-05)|all_lung(203;0.000321)|Lung NSC(277;0.000626)		Colorectal(144;0.0353)|Lung(183;0.0984)|COAD - Colon adenocarcinoma(174;0.129)|Epithelial(280;0.175)|all cancers(265;0.209)		ATGACTCGATGGAGGAAAATTT	0.307													16	843					0	0	6.4e-05	0	0
GPSM2	29899	broad.mit.edu	37	1	109441291	109441292	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:109441291_109441292GG>TT	uc010ovc.1	+	6	1081_1082	c.585_586GG>TT	c.(583-588)TTGGGT>TTTTGT	p.195_196LG>FC	AKNAD1_uc010ovb.1_Intron|GPSM2_uc010ovd.1_Missense_Mutation_p.195_196LG>FC|GPSM2_uc010ove.1_Missense_Mutation_p.195_196LG>FC	NM_013296	NP_037428	P81274	GPSM2_HUMAN	LGN protein	195_196					G-protein coupled receptor protein signaling pathway	cell cortex|nucleus	GTPase activator activity|identical protein binding			central_nervous_system(1)	1		all_epithelial(167;7.64e-05)|all_lung(203;0.000321)|Lung NSC(277;0.000626)		Colorectal(144;0.0353)|Lung(183;0.0984)|COAD - Colon adenocarcinoma(174;0.129)|Epithelial(280;0.175)|all cancers(265;0.209)		TGACTGCTTTGGGTGACCGAGC	0.406													13	552					0	0	6.4e-05	0	0
GPSM2	29899	broad.mit.edu	37	1	109461325	109461326	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:109461325_109461326GG>TT	uc010ovc.1	+	12	1850_1851	c.1354_1355GG>TT	c.(1354-1356)GGG>TTG	p.G452L	AKNAD1_uc010ovb.1_Intron|GPSM2_uc010ovd.1_Missense_Mutation_p.G452L|GPSM2_uc010ove.1_Missense_Mutation_p.G452L	NM_013296	NP_037428	P81274	GPSM2_HUMAN	LGN protein	452					G-protein coupled receptor protein signaling pathway	cell cortex|nucleus	GTPase activator activity|identical protein binding			central_nervous_system(1)	1		all_epithelial(167;7.64e-05)|all_lung(203;0.000321)|Lung NSC(277;0.000626)		Colorectal(144;0.0353)|Lung(183;0.0984)|COAD - Colon adenocarcinoma(174;0.129)|Epithelial(280;0.175)|all cancers(265;0.209)		CAGACTGAAGGGGAAAAAATAC	0.376													21	482					0	0	6.4e-05	0	0
GPSM2	29899	broad.mit.edu	37	1	109461363	109461364	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:109461363_109461364CC>AA	uc010ovc.1	+	12	1888_1889	c.1392_1393CC>AA	c.(1390-1395)CTCCAA>CTAAAA	p.Q465K	AKNAD1_uc010ovb.1_Intron|GPSM2_uc010ovd.1_Missense_Mutation_p.Q465K|GPSM2_uc010ove.1_Missense_Mutation_p.Q465K	NM_013296	NP_037428	P81274	GPSM2_HUMAN	LGN protein	465					G-protein coupled receptor protein signaling pathway	cell cortex|nucleus	GTPase activator activity|identical protein binding			central_nervous_system(1)	1		all_epithelial(167;7.64e-05)|all_lung(203;0.000321)|Lung NSC(277;0.000626)		Colorectal(144;0.0353)|Lung(183;0.0984)|COAD - Colon adenocarcinoma(174;0.129)|Epithelial(280;0.175)|all cancers(265;0.209)		CTAAAGTTCTCCAAGATGCCAG	0.381													11	423					0	0	6.4e-05	0	0
CLCC1	23155	broad.mit.edu	37	1	109492523	109492524	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:109492523_109492524CC>AA	uc001dwe.1	-	3	241_242	c.149_150GG>TT	c.(148-150)GGG>GTT	p.G50V	AKNAD1_uc010ovb.1_Intron|CLCC1_uc001dwf.1_Missense_Mutation_p.G50V|CLCC1_uc001dwg.1_Missense_Mutation_p.G50V|CLCC1_uc009wes.1_Missense_Mutation_p.G50V|CLCC1_uc009wet.1_Missense_Mutation_p.G50V|CLCC1_uc001dwh.1_Missense_Mutation_p.G50V	NM_001048210	NP_001041675	Q96S66	CLCC1_HUMAN	Mid-1-related chloride channel 1 isoform 1	50						endoplasmic reticulum|Golgi apparatus|integral to membrane|nucleus				liver(1)	1		all_epithelial(167;0.000114)|all_lung(203;0.000321)|Lung NSC(277;0.000626)		Colorectal(144;0.0314)|Lung(183;0.0924)|COAD - Colon adenocarcinoma(174;0.119)|Epithelial(280;0.231)		CATCCTTTTCCCCTGAAATACC	0.282													14	654					0	0	6.4e-05	0	0
WDR47	22911	broad.mit.edu	37	1	109538227	109538228	+	Nonsense_Mutation	DNP	CC	AA	AA			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:109538227_109538228CC>AA	uc001dwj.2	-	8	2041_2042	c.1665_1666GG>TT	c.(1663-1668)CTGGAG>CTTTAG	p.E556*	WDR47_uc001dwl.2_Nonsense_Mutation_p.E564*|WDR47_uc001dwi.2_Nonsense_Mutation_p.E557*|WDR47_uc001dwk.2_Nonsense_Mutation_p.E528*|WDR47_uc010ovf.1_Nonsense_Mutation_p.E483*	NM_001142551	NP_001136023	O94967	WDR47_HUMAN	WD repeat domain 47 isoform 3	556										ovary(1)	1		all_lung(203;0.00519)|all_epithelial(167;0.00611)|Lung NSC(277;0.00822)		Colorectal(144;0.0165)|Lung(183;0.0484)|COAD - Colon adenocarcinoma(174;0.128)|Epithelial(280;0.168)|all cancers(265;0.201)|LUSC - Lung squamous cell carcinoma(189;0.244)		GGTGATTCCTCCAGAAAAGGTA	0.381													16	780					0	0	6.4e-05	0	0
WDR47	22911	broad.mit.edu	37	1	109544928	109544928	+	Missense_Mutation	SNP	G	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:109544928G>T	uc001dwj.2	-	7	1727	c.1351C>A	c.(1351-1353)CAA>AAA	p.Q451K	WDR47_uc001dwl.2_Missense_Mutation_p.Q459K|WDR47_uc001dwi.2_Missense_Mutation_p.Q452K|WDR47_uc001dwk.2_Missense_Mutation_p.Q423K|WDR47_uc010ovf.1_Missense_Mutation_p.Q378K	NM_001142551	NP_001136023	O94967	WDR47_HUMAN	WD repeat domain 47 isoform 3	451	Gln-rich.									ovary(1)	1		all_lung(203;0.00519)|all_epithelial(167;0.00611)|Lung NSC(277;0.00822)		Colorectal(144;0.0165)|Lung(183;0.0484)|COAD - Colon adenocarcinoma(174;0.128)|Epithelial(280;0.168)|all cancers(265;0.201)|LUSC - Lung squamous cell carcinoma(189;0.244)		AACATCTGTTGGTATATCTGC	0.408													22	834					0.000586117	0.00725091	0.000586117	1	0
KIAA1324	57535	broad.mit.edu	37	1	109714493	109714493	+	Missense_Mutation	SNP	A	G	G			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:109714493A>G	uc001dwq.2	+	5	609	c.473A>G	c.(472-474)AAG>AGG	p.K158R	KIAA1324_uc009wex.1_Missense_Mutation_p.K158R|KIAA1324_uc009wey.2_Missense_Mutation_p.K158R|KIAA1324_uc010ovg.1_Missense_Mutation_p.K56R	NM_020775	NP_065826	Q6UXG2	K1324_HUMAN	hypothetical protein LOC57535 precursor	158	Extracellular (Potential).				macroautophagy|positive regulation of vacuole organization|regulation of apoptosis	integral to plasma membrane				ovary(2)|haematopoietic_and_lymphoid_tissue(1)|breast(1)|skin(1)	5		all_epithelial(167;0.000102)|all_lung(203;0.000323)|Lung NSC(277;0.00063)		Colorectal(144;0.0188)|Lung(183;0.0527)|COAD - Colon adenocarcinoma(174;0.14)|Epithelial(280;0.21)|all cancers(265;0.249)		CACAGGTCCAAGTGGGTTCCC	0.567													20	216					0	0	0.000175454	0	0
SORT1	6272	broad.mit.edu	37	1	109859563	109859564	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:109859563_109859564CC>AA	uc001dxm.1	-	17	2207_2208	c.2158_2159GG>TT	c.(2158-2160)GGG>TTG	p.G720L	SORT1_uc010ovi.1_Missense_Mutation_p.G583L	NM_002959	NP_002950	Q99523	SORT_HUMAN	sortilin 1 preproprotein	720	Interactions with LRPAP1 and NGFB.|Extracellular (Potential).				endocytosis|endosome to lysosome transport|endosome transport via multivesicular body sorting pathway|glucose import|Golgi to endosome transport|induction of apoptosis by extracellular signals|myotube differentiation|negative regulation of apoptosis|negative regulation of lipoprotein lipase activity|neuropeptide signaling pathway|ossification|plasma membrane to endosome transport|regulation of gene expression|response to insulin stimulus|vesicle organization	cell surface|coated pit|early endosome|endoplasmic reticulum membrane|endosome membrane|Golgi cisterna membrane|integral to membrane|lysosomal membrane|microsome|nuclear membrane|perinuclear region of cytoplasm|plasma membrane	enzyme binding|nerve growth factor binding|nerve growth factor receptor activity|neurotensin receptor activity, non-G-protein coupled			ovary(1)	1		all_epithelial(167;4.69e-05)|all_lung(203;0.00016)|Lung NSC(277;0.000318)|Breast(1374;0.244)		Lung(183;0.0529)|Colorectal(144;0.142)|Epithelial(280;0.145)|Kidney(133;0.169)|all cancers(265;0.184)		GCATTTGTCCCCTGGAATTTTC	0.401													13	454					0	0	6.4e-05	0	0
PSMA5	5686	broad.mit.edu	37	1	109952579	109952580	+	Nonsense_Mutation	DNP	CC	AA	AA			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:109952579_109952580CC>AA	uc001dxn.2	-	8	703_704	c.618_619GG>TT	c.(616-621)ATGGAG>ATTTAG	p.206_207ME>I*	PSMA5_uc010ovj.1_Nonsense_Mutation_p.148_149ME>I*	NM_002790	NP_002781	P28066	PSA5_HUMAN	proteasome alpha 5 subunit	206_207					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	cytoplasm|nucleus|proteasome core complex, alpha-subunit complex	protein binding|threonine-type endopeptidase activity				0		all_epithelial(167;2.83e-05)|all_lung(203;0.00016)|Lung NSC(277;0.000318)|Breast(1374;0.244)		Lung(183;0.045)|Colorectal(144;0.116)|Epithelial(280;0.187)|all cancers(265;0.196)|LUSC - Lung squamous cell carcinoma(189;0.235)		AGCTTCTCCTCCATTACTTGTT	0.277													20	785					0	0	6.4e-05	0	0
C1orf88	128344	broad.mit.edu	37	1	111891265	111891266	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:111891265_111891266CC>AA	uc001eaw.2	+	4	466_467	c.386_387CC>AA	c.(385-387)CCC>CAA	p.P129Q	C1orf88_uc001eax.2_Missense_Mutation_p.P96Q|C1orf88_uc009wge.1_Intron|C1orf88_uc001eay.2_Missense_Mutation_p.P42Q	NM_181643	NP_857594	Q8TCI5	CA088_HUMAN	hypothetical protein LOC128344	129										ovary(1)|skin(1)	2		all_cancers(81;3.21e-05)|all_epithelial(167;1.19e-05)|all_lung(203;0.000152)|Lung NSC(277;0.000301)		Lung(183;0.0239)|Colorectal(144;0.0301)|all cancers(265;0.0677)|Epithelial(280;0.0897)|COAD - Colon adenocarcinoma(174;0.116)|LUSC - Lung squamous cell carcinoma(189;0.135)		ACTTACTATCCCAGGTATGTCT	0.386													13	468					0	0	6.4e-05	0	0
RSBN1	54665	broad.mit.edu	37	1	114310987	114310987	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:114310987G>A	uc001edq.2	-	5	1719	c.1683C>T	c.(1681-1683)CTC>CTT	p.L561L	RSBN1_uc001edr.2_RNA	NM_018364	NP_060834	Q5VWQ0	RSBN1_HUMAN	round spermatid basic protein 1	561						nucleus				ovary(1)	1	Lung SC(450;0.184)	all_cancers(81;3.78e-08)|all_epithelial(167;5.56e-08)|all_lung(203;6.97e-06)|Lung NSC(69;1.18e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		GTAGGTACTGGAGATTTTTTA	0.398													5	61					0	0	0.000602214	0	0
AP4B1	10717	broad.mit.edu	37	1	114442839	114442839	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:114442839G>A	uc001eeb.2	-	5	944	c.801C>T	c.(799-801)CCC>CCT	p.P267P	uc001edv.1_RNA|AP4B1_uc001eec.2_Silent_p.P99P|AP4B1_uc001eed.2_Silent_p.P267P|AP4B1_uc010owp.1_Silent_p.P168P|AP4B1_uc001eea.1_Silent_p.P61P|AP4B1_uc010owq.1_Silent_p.P174P	NM_006594	NP_006585	Q9Y6B7	AP4B1_HUMAN	adaptor-related protein complex 4, beta 1	267					intracellular protein transport|vesicle-mediated transport	clathrin adaptor complex|soluble fraction|trans-Golgi network	protein binding|protein transporter activity			ovary(3)|central_nervous_system(1)	4	Lung SC(450;0.184)	all_cancers(81;4.5e-08)|all_epithelial(167;1.1e-07)|all_lung(203;1.53e-05)|Lung NSC(69;2.76e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		TTTGTACGTGGGGAAACATTT	0.468													11	63					0	0	0.000673444	0	0
DENND2C	163259	broad.mit.edu	37	1	115168587	115168587	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:115168587G>A	uc001efd.1	-	4	721	c.19C>T	c.(19-21)CGT>TGT	p.R7C	DENND2C_uc001eez.2_RNA|DENND2C_uc001efc.1_Missense_Mutation_p.R7C	NM_198459	NP_940861	Q68D51	DEN2C_HUMAN	DENN/MADD domain containing 2C	7										skin(3)	3	all_epithelial(7;9.54e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		ACAGTAGTACGAGAAAAACCA	0.358													15	56					0	0	0.00074312	0	0
NBPF7	343505	broad.mit.edu	37	1	120382883	120382884	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:120382883_120382884GG>TT	uc010oxk.1	-	4	1243_1244	c.622_623CC>AA	c.(622-624)CCC>AAC	p.P208N		NM_001047980	NP_001041445	P0C2Y1	NBPF7_HUMAN	hypothetical protein LOC343505	208	NBPF 1.					cytoplasm				ovary(1)|skin(1)	2	all_cancers(5;7.07e-10)|all_epithelial(5;1.62e-10)|all_neural(166;0.153)|Breast(55;0.234)	all_lung(203;3.66e-05)|Lung NSC(69;0.000192)|all_epithelial(167;0.0347)		Lung(183;0.0103)|LUSC - Lung squamous cell carcinoma(189;0.0544)		GTCTTACCTGGGAGCAGGTGAT	0.401													16	417					0	0	6.4e-05	0	0
ADAM30	11085	broad.mit.edu	37	1	120437199	120437200	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:120437199_120437200CC>AA	uc001eij.2	-	1	1914_1915	c.1760_1761GG>TT	c.(1759-1761)TGG>TTT	p.W587F		NM_021794	NP_068566	Q9UKF2	ADA30_HUMAN	ADAM metallopeptidase domain 30 preproprotein	587	Cys-rich.|Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			ovary(2)|lung(1)	3	all_cancers(5;7.07e-10)|all_epithelial(5;1.62e-10)|all_neural(166;0.153)|Breast(55;0.234)	all_lung(203;1.55e-06)|Lung NSC(69;1.04e-05)|all_epithelial(167;0.00138)		Lung(183;0.0204)|LUSC - Lung squamous cell carcinoma(189;0.117)		AGCCTGTGCCCCAGCACATGAG	0.436													22	674					0	0	6.4e-05	0	0
ADAM30	11085	broad.mit.edu	37	1	120437782	120437783	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:120437782_120437783GG>TT	uc001eij.2	-	1	1331_1332	c.1177_1178CC>AA	c.(1177-1179)CCA>AAA	p.P393K		NM_021794	NP_068566	Q9UKF2	ADA30_HUMAN	ADAM metallopeptidase domain 30 preproprotein	393	Peptidase M12B.|Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			ovary(2)|lung(1)	3	all_cancers(5;7.07e-10)|all_epithelial(5;1.62e-10)|all_neural(166;0.153)|Breast(55;0.234)	all_lung(203;1.55e-06)|Lung NSC(69;1.04e-05)|all_epithelial(167;0.00138)		Lung(183;0.0204)|LUSC - Lung squamous cell carcinoma(189;0.117)		ACCTAGTCCTGGGATATTATTT	0.411													16	763					0	0	6.4e-05	0	0
NOTCH2	4853	broad.mit.edu	37	1	120464353	120464354	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:120464353_120464354GG>TT	uc001eik.2	-	29	5548_5549	c.5292_5293CC>AA	c.(5290-5295)CCCCAG>CCAAAG	p.Q1765K		NM_024408	NP_077719	Q04721	NOTC2_HUMAN	notch 2 preproprotein	1765	Cytoplasmic (Potential).				anti-apoptosis|bone remodeling|cell cycle arrest|cell fate determination|cell growth|hemopoiesis|induction of apoptosis|negative regulation of cell proliferation|nervous system development|Notch receptor processing|Notch signaling pathway|organ morphogenesis|positive regulation of Ras protein signal transduction|regulation of transcription, DNA-dependent|stem cell maintenance|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|ligand-regulated transcription factor activity|protein binding|receptor activity			lung(8)|haematopoietic_and_lymphoid_tissue(7)|ovary(4)|central_nervous_system(2)|skin(2)|kidney(2)|breast(1)|prostate(1)	27	all_neural(166;0.153)	all_lung(203;1.96e-06)|Lung NSC(69;1.47e-05)|all_epithelial(167;0.000809)		Lung(183;0.0242)|LUSC - Lung squamous cell carcinoma(189;0.133)		TTCTTTGGCTGGGGCCCTTCAT	0.421			N|F|Mis		marginal zone lymphoma|DLBCL				Alagille_Syndrome				15	500					0	0	6.4e-05	0	0
PDE4DIP	9659	broad.mit.edu	37	1	144864151	144864152	+	Missense_Mutation	DNP	GG	CT	CT			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:144864151_144864152GG>CT	uc001elw.3	-	36	6234_6235	c.5943_5944CC>AG	c.(5941-5946)CTCCAG>CTAGAG	p.Q1982E	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Missense_Mutation_p.Q1876E|PDE4DIP_uc001elv.3_Missense_Mutation_p.Q989E|PDE4DIP_uc001ema.2_Missense_Mutation_p.Q169E	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	1982	Potential.				cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		TCGTTTTCCTGGAGGGAAAGAC	0.45			T	PDGFRB	MPD								35	522					0	0	6.4e-05	0	0
PDE4DIP	9659	broad.mit.edu	37	1	144874691	144874691	+	Silent	SNP	G	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:144874691G>T	uc001elw.3	-	30	5208	c.4917C>A	c.(4915-4917)CCC>CCA	p.P1639P	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Silent_p.P1595P|PDE4DIP_uc001elv.3_Silent_p.P646P	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	1639	NBPF.				cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		CTGAGTGACTGGGAGAAGCTT	0.502			T	PDGFRB	MPD								12	277					1.15088e-07	1.43658e-06	0.000422831	1	0
PDE4DIP	9659	broad.mit.edu	37	1	144916572	144916572	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:144916572C>T	uc001elw.3	-	13	2074	c.1783G>A	c.(1783-1785)GAG>AAG	p.E595K	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Missense_Mutation_p.E661K|PDE4DIP_uc001emc.1_Missense_Mutation_p.E595K|PDE4DIP_uc001emd.1_Missense_Mutation_p.E595K|PDE4DIP_uc001emb.1_Missense_Mutation_p.E758K|PDE4DIP_uc001eme.1_Missense_Mutation_p.E124K|PDE4DIP_uc001emf.1_Intron	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	595	Potential.				cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		AGTCTTGCCTCCACTTCTTTG	0.423			T	PDGFRB	MPD								156	675					0	0	0.000781405	0	0
PDE4DIP	9659	broad.mit.edu	37	1	144916680	144916681	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:144916680_144916681GG>TT	uc001elw.3	-	13	1965_1966	c.1674_1675CC>AA	c.(1672-1677)CTCCAG>CTAAAG	p.Q559K	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Missense_Mutation_p.Q625K|PDE4DIP_uc001emc.1_Missense_Mutation_p.Q559K|PDE4DIP_uc001emd.1_Missense_Mutation_p.Q559K|PDE4DIP_uc001emb.1_Missense_Mutation_p.Q722K|PDE4DIP_uc001eme.1_Missense_Mutation_p.Q88K|PDE4DIP_uc001emf.1_Missense_Mutation_p.Q346K	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	559	Potential.				cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		TTCAGCCACTGGAGGTTTTGAC	0.436			T	PDGFRB	MPD								18	662					0	0	6.4e-05	0	0
PDE4DIP	9659	broad.mit.edu	37	1	145015873	145015874	+	Missense_Mutation	DNP	CG	AA	AA			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:145015873_145015874CG>AA	uc001elx.3	-	3	549_550	c.214_215CG>TT	c.(214-216)CGA>TTA	p.R72L	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elm.3_5'UTR|PDE4DIP_uc001eln.3_Missense_Mutation_p.R72L|PDE4DIP_uc001elo.2_Missense_Mutation_p.R143L|PDE4DIP_uc001emh.2_Missense_Mutation_p.R143L|uc001emj.2_Intron	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	6					cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		CTCAAAGTCTCGAAGAGCCTGG	0.436			T	PDGFRB	MPD								12	746					0	0	6.4e-05	0	0
NOTCH2NL	388677	broad.mit.edu	37	1	145281373	145281374	+	Nonsense_Mutation	DNP	GG	TT	TT			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:145281373_145281374GG>TT	uc001emn.3	+	4	673_674	c.303_304GG>TT	c.(301-306)AAGGAG>AATTAG	p.101_102KE>N*	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|NBPF10_uc001emp.3_5'UTR|NOTCH2NL_uc001emm.3_Nonsense_Mutation_p.101_102KE>N*|NOTCH2NL_uc001emo.2_Nonsense_Mutation_p.101_102KE>N*|NOTCH2NL_uc010oyh.1_RNA	NM_203458	NP_982283	Q7Z3S9	NT2NL_HUMAN	Notch homolog 2 N-terminal like protein	101_102	EGF-like 3.				cell differentiation|multicellular organismal development|Notch signaling pathway	cytoplasm|extracellular region	calcium ion binding			ovary(1)	1						CTTTAGGTAAGGAGTGCCAATG	0.51													20	626					0	0	6.4e-05	0	0
BCL9	607	broad.mit.edu	37	1	147091993	147091993	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:147091993C>T	uc001epq.2	+	8	2772	c.2032C>T	c.(2032-2034)CCT>TCT	p.P678S	BCL9_uc010ozr.1_Missense_Mutation_p.P604S	NM_004326	NP_004317	O00512	BCL9_HUMAN	B-cell CLL/lymphoma 9	678	Pro-rich.				Wnt receptor signaling pathway	nucleus	protein binding			ovary(2)|large_intestine(2)|breast(1)|skin(1)	6	all_hematologic(923;0.115)					CCCCATTTTCCCTCGAATACC	0.562			T	IGH@|IGL@	B-ALL								8	25					0	0	0.000442599	0	0
ZNF687	57592	broad.mit.edu	37	1	151262612	151262612	+	Missense_Mutation	SNP	C	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:151262612C>A	uc001exq.2	+	7	3077	c.2979C>A	c.(2977-2979)TTC>TTA	p.F993L	ZNF687_uc009wmo.2_Missense_Mutation_p.F993L|ZNF687_uc009wmp.2_Missense_Mutation_p.F993L	NM_020832	NP_065883	Q8N1G0	ZN687_HUMAN	zinc finger protein 687	993	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus	DNA binding|zinc ion binding			central_nervous_system(3)|ovary(1)	4	Lung SC(34;0.00471)|Ovarian(49;0.0147)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.112)|LUSC - Lung squamous cell carcinoma(543;0.181)			TGAAAAAGTTCCCCTGTCGCC	0.612													15	50					6.33239e-15	7.99068e-14	0.000175454	1	0
ZBTB7B	51043	broad.mit.edu	37	1	154988846	154988846	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:154988846C>T	uc001fgk.3	+	4	1463	c.1305C>T	c.(1303-1305)TGC>TGT	p.C435C	ZBTB7B_uc009wpa.2_Silent_p.C435C|ZBTB7B_uc001fgj.3_Silent_p.C469C|ZBTB7B_uc010peq.1_Silent_p.C469C|ZBTB7B_uc001fgl.3_Silent_p.C435C	NM_015872	NP_056956	O15156	ZBT7B_HUMAN	zinc finger and BTB domain containing 7B	435	C2H2-type 4; atypical.				cell differentiation|ectoderm development|multicellular organismal development|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nucleus	DNA binding|zinc ion binding				0	all_epithelial(22;2.77e-30)|all_lung(78;4.1e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		BRCA - Breast invasive adenocarcinoma(34;0.00034)			GCCACCTGTGCCACAAGGCTT	0.647													8	14					0	0	0.000157383	0	0
ISG20L2	81875	broad.mit.edu	37	1	156693162	156693162	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:156693162G>A	uc001fps.1	-	3	1302	c.1041C>T	c.(1039-1041)GCC>GCT	p.A347A	ISG20L2_uc001fpt.1_Silent_p.A347A	NM_030980	NP_112242	Q9H9L3	I20L2_HUMAN	interferon stimulated exonuclease gene	347	Exonuclease.				ribosome biogenesis	nucleolus	exonuclease activity|nucleic acid binding|protein binding			ovary(1)|central_nervous_system(1)	2	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					GGGGATTCCGGGCTAGGTGCT	0.567													21	59					0	0	0.000229342	0	0
FCRL5	83416	broad.mit.edu	37	1	157497543	157497543	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:157497543C>T	uc001fqu.2	-	9	1982	c.1824G>A	c.(1822-1824)GGG>GGA	p.G608G	FCRL5_uc009wsm.2_Silent_p.G608G|FCRL5_uc010phv.1_Silent_p.G608G|FCRL5_uc010phw.1_Silent_p.G523G	NM_031281	NP_112571	Q96RD9	FCRL5_HUMAN	Fc receptor-like 5	608	Extracellular (Potential).|Ig-like C2-type 6.					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(2)|central_nervous_system(1)	6	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.231)				CTGAGCTGCTCCCCAGGGTGA	0.567													19	27					0	0	0.000132079	0	0
FCRL1	115350	broad.mit.edu	37	1	157773804	157773804	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:157773804G>A	uc001frg.2	-	3	263	c.150C>T	c.(148-150)TTC>TTT	p.F50F	FCRL1_uc001frf.2_5'Flank|FCRL1_uc001frh.2_Silent_p.F50F|FCRL1_uc001fri.2_Silent_p.F50F|FCRL1_uc001frj.2_RNA	NM_052938	NP_443170	Q96LA6	FCRL1_HUMAN	Fc receptor-like 1 isoform 1 precursor	50	Extracellular (Potential).|Ig-like C2-type 1.					integral to membrane|plasma membrane	receptor activity			skin(4)|ovary(3)	7	all_hematologic(112;0.0378)		LUSC - Lung squamous cell carcinoma(543;0.24)			AGCAGAACTGGAACTGGGCAT	0.567													13	31					0	0	0.00010058	0	0
CD1E	913	broad.mit.edu	37	1	158324454	158324454	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:158324454C>T	uc001fse.2	+	2	585	c.346C>T	c.(346-348)CAG>TAG	p.Q116*	CD1E_uc010pid.1_Nonsense_Mutation_p.Q114*|CD1E_uc010pie.1_Intron|CD1E_uc010pif.1_Intron|CD1E_uc001fsd.2_Nonsense_Mutation_p.Q116*|CD1E_uc001fsk.2_Nonsense_Mutation_p.Q116*|CD1E_uc001fsj.2_Nonsense_Mutation_p.Q116*|CD1E_uc001fsc.2_Intron|CD1E_uc010pig.1_Intron|CD1E_uc001fsa.2_Intron|CD1E_uc001fsf.2_Nonsense_Mutation_p.Q116*|CD1E_uc001fry.2_Nonsense_Mutation_p.Q116*|CD1E_uc001fsg.2_Intron|CD1E_uc001fsh.2_Intron|CD1E_uc001fsi.2_Nonsense_Mutation_p.Q116*|CD1E_uc009wsv.2_Intron|CD1E_uc001frz.2_Nonsense_Mutation_p.Q116*|CD1E_uc009wsw.2_5'Flank	NM_030893	NP_112155	P15812	CD1E_HUMAN	CD1E antigen isoform a precursor	116					antigen processing and presentation|immune response	early endosome|Golgi membrane|integral to plasma membrane|late endosome|lysosomal lumen				skin(3)	3	all_hematologic(112;0.0378)					TGGTCAATTTCAGCTTGAATG	0.388													11	26					0	0	0.00010058	0	0
CD1E	913	broad.mit.edu	37	1	158325625	158325625	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:158325625G>A	uc001fse.2	+	4	873	c.634G>A	c.(634-636)GAG>AAG	p.E212K	CD1E_uc010pid.1_Missense_Mutation_p.E210K|CD1E_uc010pie.1_Missense_Mutation_p.E113K|CD1E_uc010pif.1_Missense_Mutation_p.E23K|CD1E_uc001fsd.2_Missense_Mutation_p.E212K|CD1E_uc001fsk.2_Missense_Mutation_p.E122K|CD1E_uc001fsj.2_Missense_Mutation_p.E122K|CD1E_uc001fsc.2_Missense_Mutation_p.E23K|CD1E_uc010pig.1_RNA|CD1E_uc001fsa.2_Missense_Mutation_p.E23K|CD1E_uc001fsf.2_Missense_Mutation_p.E212K|CD1E_uc001fry.2_Missense_Mutation_p.E212K|CD1E_uc001fsg.2_Missense_Mutation_p.E23K|CD1E_uc001fsh.2_Missense_Mutation_p.E23K|CD1E_uc001fsi.2_Missense_Mutation_p.E212K|CD1E_uc009wsv.2_Missense_Mutation_p.E113K|CD1E_uc001frz.2_Missense_Mutation_p.E122K|CD1E_uc009wsw.2_5'UTR	NM_030893	NP_112155	P15812	CD1E_HUMAN	CD1E antigen isoform a precursor	212	Ig-like.				antigen processing and presentation|immune response	early endosome|Golgi membrane|integral to plasma membrane|late endosome|lysosomal lumen				skin(3)	3	all_hematologic(112;0.0378)					AGTGAAGCCAGAGGCCTGGCT	0.522													7	10					0	0	0.000274275	0	0
SPTA1	6708	broad.mit.edu	37	1	158590199	158590199	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:158590199C>T	uc001fst.1	-	44	6377	c.6178G>A	c.(6178-6180)GAA>AAA	p.E2060K		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	2060	Spectrin 20.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					TCCATCTTTTCACACCAGTTG	0.468													7	26					0	0	0.000274275	0	0
SPTA1	6708	broad.mit.edu	37	1	158646001	158646001	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:158646001G>A	uc001fst.1	-	8	1241	c.1042C>T	c.(1042-1044)CTG>TTG	p.L348L		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	348	Spectrin 4.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					CTGGAGACCAGATCTTCTTTC	0.478													7	27					0	0	0.000157383	0	0
PYHIN1	149628	broad.mit.edu	37	1	158911905	158911905	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:158911905C>T	uc001ftb.2	+	5	963	c.718C>T	c.(718-720)CAT>TAT	p.H240Y	PYHIN1_uc001ftc.2_Missense_Mutation_p.H231Y|PYHIN1_uc001ftd.2_Missense_Mutation_p.H240Y|PYHIN1_uc001fte.2_Missense_Mutation_p.H231Y	NM_152501	NP_689714	Q6K0P9	IFIX_HUMAN	pyrin and HIN domain family, member 1 alpha 1	240	HIN-200.				cell cycle	nuclear speck				ovary(3)|pancreas(1)	4	all_hematologic(112;0.0378)					AAGAATGTTTCATGCTACAGT	0.318													17	40					0	0	0.000229342	0	0
MAEL	84944	broad.mit.edu	37	1	166959028	166959028	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:166959028G>A	uc001gdy.1	+	2	258	c.187G>A	c.(187-189)GCC>ACC	p.A63T	MAEL_uc001gdz.1_Intron|MAEL_uc009wvf.1_5'Flank	NM_032858	NP_116247	Q96JY0	MAEL_HUMAN	maelstrom homolog	63	HMG box.				cell differentiation|DNA methylation involved in gamete generation|gene silencing by RNA|multicellular organismal development|piRNA metabolic process|spermatogenesis	piP-body	DNA binding			skin(1)	1						AGAATGGAGGGCCGCTCAGGG	0.438													10	26					0	0	0.00010058	0	0
SELE	6401	broad.mit.edu	37	1	169695945	169695945	+	Missense_Mutation	SNP	G	A	A	rs3917429	byFrequency	TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:169695945G>A	uc001ggm.3	-	11	1805	c.1648C>T	c.(1648-1650)CCC>TCC	p.P550S	C1orf112_uc001ggj.2_Intron	NM_000450	NP_000441	P16581	LYAM2_HUMAN	selectin E precursor	550	Extracellular (Potential).				actin filament-based process|activation of phospholipase C activity|calcium-mediated signaling|heterophilic cell-cell adhesion|leukocyte migration involved in inflammatory response|leukocyte tethering or rolling|positive regulation of receptor internalization|regulation of inflammatory response|response to interleukin-1|response to lipopolysaccharide|response to tumor necrosis factor	caveola|coated pit|cortical cytoskeleton|extracellular space|integral to membrane|perinuclear region of cytoplasm	oligosaccharide binding|phospholipase binding|sialic acid binding|transmembrane receptor activity			ovary(3)|skin(2)	5	all_hematologic(923;0.208)					GACTCAGTGGGAGCTAAGGAA	0.463													8	10					0	0	0.000274275	0	0
C1orf9	51430	broad.mit.edu	37	1	172538211	172538211	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:172538211C>T	uc001giq.3	+	7	1101	c.785C>T	c.(784-786)CCC>CTC	p.P262L	C1orf9_uc010pmm.1_Missense_Mutation_p.P262L|C1orf9_uc009wwd.2_Missense_Mutation_p.P225L|C1orf9_uc010pmn.1_Missense_Mutation_p.P225L|C1orf9_uc010pmo.1_RNA	NM_014283	NP_055098	Q9UBS9	OSPT_HUMAN	chromosome 1 open reading frame 9 protein	262					multicellular organismal development|ossification	integral to membrane|rough endoplasmic reticulum membrane				ovary(2)	2		Breast(1374;0.212)		Colorectal(1306;3.98e-05)|KIRC - Kidney renal clear cell carcinoma(1967;0.00544)		GTAGCAAGTCCCAAAGATCCA	0.323													31	80					0	0	0.000409698	0	0
PAPPA2	60676	broad.mit.edu	37	1	176664979	176664979	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:176664979C>T	uc001gkz.2	+	7	3894	c.2730C>T	c.(2728-2730)ACC>ACT	p.T910T	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	910					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						GTTATTGGACCCCAGAGGAGG	0.532													11	17					0	0	0.000151284	0	0
ASTN1	460	broad.mit.edu	37	1	176838053	176838053	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:176838053G>A	uc001glc.2	-	22	3786	c.3574C>T	c.(3574-3576)CTC>TTC	p.L1192F	ASTN1_uc001glb.1_Missense_Mutation_p.L1192F|ASTN1_uc001gld.1_Missense_Mutation_p.L1192F	NM_004319	NP_004310	O14525	ASTN1_HUMAN	astrotactin isoform 1	1200					cell migration|neuron cell-cell adhesion	integral to membrane				ovary(6)|skin(5)|central_nervous_system(2)|large_intestine(1)|lung(1)	15						TAGTGGTAGAGGACCCGGTGT	0.493													5	45					0	0	3.59834e-05	0	0
NPL	80896	broad.mit.edu	37	1	182787806	182787806	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:182787806C>T	uc009wyb.2	+	9	728	c.588C>T	c.(586-588)TTC>TTT	p.F196F	NPL_uc010pnx.1_Silent_p.F177F|NPL_uc010pny.1_Intron|NPL_uc001gpo.1_Silent_p.F177F|NPL_uc009wyc.2_Silent_p.F196F|NPL_uc001gpp.3_Silent_p.F196F|NPL_uc001gpq.1_Silent_p.F196F	NM_030769	NP_110396	Q9BXD5	NPL_HUMAN	N-acetylneuraminate pyruvate lyase	196					carbohydrate metabolic process	cytoplasm	N-acetylneuraminate lyase activity			ovary(1)|central_nervous_system(1)|skin(1)	3						AGTTTGCTTTCCTTTTTGGGG	0.453													10	16					0	0	0.000673444	0	0
KCNT2	343450	broad.mit.edu	37	1	196295984	196295984	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:196295984G>A	uc001gtd.1	-	19	2199	c.2139C>T	c.(2137-2139)GCC>GCT	p.A713A	KCNT2_uc009wyt.1_Intron|KCNT2_uc001gte.1_Silent_p.A663A|KCNT2_uc001gtf.1_Silent_p.A713A|KCNT2_uc001gtg.1_RNA|KCNT2_uc009wyu.2_Silent_p.A713A|KCNT2_uc001gth.1_Silent_p.A234A	NM_198503	NP_940905	Q6UVM3	KCNT2_HUMAN	potassium channel, subfamily T, member 2	713	Cytoplasmic (Potential).					voltage-gated potassium channel complex	ATP binding|calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(5)|breast(1)|skin(1)	7						TGAATCCATAGGCTTTTGCAT	0.318													9	50					0	0	0.000673444	0	0
CRB1	23418	broad.mit.edu	37	1	197313541	197313541	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:197313541C>T	uc001gtz.2	+	3	918	c.783C>T	c.(781-783)CTC>CTT	p.L261L	CRB1_uc010poz.1_Silent_p.L192L|CRB1_uc001gty.1_Silent_p.L261L|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Intron|CRB1_uc010ppb.1_Silent_p.L261L|CRB1_uc010ppc.1_RNA	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	261	Extracellular (Potential).				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						ACTGTGAACTCAACACTGATG	0.517													22	40					0	0	0.000229342	0	0
CRB1	23418	broad.mit.edu	37	1	197391011	197391011	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:197391011G>A	uc001gtz.2	+	6	2188	c.2053G>A	c.(2053-2055)GGA>AGA	p.G685R	CRB1_uc010poz.1_Missense_Mutation_p.G616R|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Missense_Mutation_p.G573R|CRB1_uc010ppb.1_Missense_Mutation_p.G685R|CRB1_uc010ppc.1_RNA|CRB1_uc010ppd.1_Missense_Mutation_p.G166R|CRB1_uc001gub.1_Missense_Mutation_p.G334R	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	685	Extracellular (Potential).|EGF-like 12.				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						TCAAAGCAGAGGACGCTGCAT	0.507													6	29					0	0	3.59834e-05	0	0
SRGAP2	23380	broad.mit.edu	37	1	206619523	206619523	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:206619523C>T	uc001hdy.2	+	15	2049	c.1716C>T	c.(1714-1716)TCC>TCT	p.S572S	SRGAP2_uc010prt.1_Silent_p.S495S|SRGAP2_uc001hdx.2_Silent_p.S572S|SRGAP2_uc010pru.1_Silent_p.S495S|SRGAP2_uc010prv.1_Silent_p.S496S	NM_015326	NP_056141	O75044	FNBP2_HUMAN	SLIT-ROBO Rho GTPase activating protein 2	659	Rho-GAP.				axon guidance|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding				0	Breast(84;0.137)					ACCAGGTGTCCTGCCAAGCCC	0.557													12	41					0	0	0.000151284	0	0
CR1	1378	broad.mit.edu	37	1	207812749	207812750	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:207812749_207812750CC>TT	uc001hfy.2	+	39	6255_6256	c.6115_6116CC>TT	c.(6115-6117)CCT>TTT	p.P2039F	CR1_uc001hfx.2_Missense_Mutation_p.P2489F	NM_000573	NP_000564	P17927	CR1_HUMAN	complement receptor 1 isoform F precursor	2039	Cytoplasmic (Potential).				complement activation, classical pathway|innate immune response	integral to plasma membrane	complement receptor activity			ovary(3)	3						CAGGGTCCTTCCTTGACAAAGT	0.366													7	9					0	0	6.4e-05	0	0
PLXNA2	5362	broad.mit.edu	37	1	208383671	208383671	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:208383671C>T	uc001hgz.2	-	3	2083	c.1325G>A	c.(1324-1326)GGC>GAC	p.G442D	PLXNA2_uc001hha.3_Missense_Mutation_p.G496D	NM_025179	NP_079455	O75051	PLXA2_HUMAN	plexin A2 precursor	442	Extracellular (Potential).|Sema.				axon guidance	integral to membrane|intracellular|plasma membrane				ovary(2)|central_nervous_system(1)	3				OV - Ovarian serous cystadenocarcinoma(81;0.199)		CACGCTGTAGCCGTTGTAAAC	0.542													7	29					0	0	0.000274275	0	0
SERTAD4	56256	broad.mit.edu	37	1	210415269	210415269	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:210415269C>T	uc001hhy.2	+	4	837	c.658C>T	c.(658-660)CCC>TCC	p.P220S	SERTAD4_uc009xcw.2_Missense_Mutation_p.P220S	NM_019605	NP_062551	Q9NUC0	SRTD4_HUMAN	SERTA domain containing 4	220	Ser-rich.						protein binding			ovary(1)|pancreas(1)	2				OV - Ovarian serous cystadenocarcinoma(81;0.0237)|all cancers(67;0.127)		TGcctcctctccctccgcctc	0.343													14	47					0	0	0.000151284	0	0
RCOR3	55758	broad.mit.edu	37	1	211449675	211449676	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:211449675_211449676CG>AT	uc001hig.2	+	4	426_427	c.257_258CG>AT	c.(256-258)CCG>CAT	p.P86H	RCOR3_uc010psv.1_RNA|RCOR3_uc001hie.2_Missense_Mutation_p.P144H|RCOR3_uc010psw.1_Missense_Mutation_p.P144H|RCOR3_uc001hif.2_Missense_Mutation_p.P144H	NM_018254	NP_060724	Q9P2K3	RCOR3_HUMAN	REST corepressor 3 isoform d	86	SANT 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(81;0.00961)|all cancers(67;0.0999)|Epithelial(68;0.171)		ACTCCCTTTCCGGATGAGTGGA	0.396													6	161					0	0	6.4e-05	0	0
CENPF	1063	broad.mit.edu	37	1	214813547	214813547	+	Missense_Mutation	SNP	G	C	C			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:214813547G>C	uc001hkm.2	+	12	2040	c.1866G>C	c.(1864-1866)TGG>TGC	p.W622C		NM_016343	NP_057427	P49454	CENPF_HUMAN	centromere protein F	622	Potential.				cell differentiation|cell division|cell proliferation|DNA replication|G2 phase of mitotic cell cycle|kinetochore assembly|metaphase plate congression|mitotic cell cycle spindle assembly checkpoint|mitotic prometaphase|muscle organ development|negative regulation of transcription, DNA-dependent|protein transport|regulation of G2/M transition of mitotic cell cycle|regulation of striated muscle tissue development|response to drug	condensed chromosome outer kinetochore|cytosol|midbody|nuclear envelope|nuclear matrix|perinuclear region of cytoplasm|spindle pole	chromatin binding|dynein binding|protein C-terminus binding|protein homodimerization activity|transcription factor binding			ovary(6)|central_nervous_system(4)|large_intestine(2)|skin(1)	13				all cancers(67;0.00836)|OV - Ovarian serous cystadenocarcinoma(81;0.00855)|GBM - Glioblastoma multiforme(131;0.0694)|Epithelial(68;0.0833)		TTTCTTGTTGGAAAAGTGAAA	0.338													9	74					0	0	0.000673444	0	0
USH2A	7399	broad.mit.edu	37	1	215853584	215853584	+	Missense_Mutation	SNP	A	C	C			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:215853584A>C	uc001hku.1	-	62	12588	c.12201T>G	c.(12199-12201)AGT>AGG	p.S4067R		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	4067	Fibronectin type-III 26.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		TTCTCAGTCCACTTGGGGAAG	0.423										HNSCC(13;0.011)			8	74					0	0	0.000274275	0	0
HHIPL2	79802	broad.mit.edu	37	1	222696041	222696042	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:222696041_222696042GG>TT	uc001hnh.1	-	9	2134_2135	c.2076_2077CC>AA	c.(2074-2079)CCCCAC>CCAAAC	p.H693N		NM_024746	NP_079022	Q6UWX4	HIPL2_HUMAN	HHIP-like 2 precursor	693					carbohydrate metabolic process	extracellular region	oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor|quinone binding			ovary(1)	1				GBM - Glioblastoma multiforme(131;0.0185)		TGGCGGACGTGGGGCCCCACTC	0.564													13	385					0	0	6.4e-05	0	0
C1orf58	148362	broad.mit.edu	37	1	222903487	222903488	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:222903487_222903488CC>AA	uc001hnq.1	+	11	1352_1353	c.957_958CC>AA	c.(955-960)ACCCTA>ACAATA	p.L320I	C1orf58_uc010put.1_Missense_Mutation_p.L288I|C1orf58_uc010puu.1_Missense_Mutation_p.L320I|C1orf58_uc010puv.1_Missense_Mutation_p.L288I|uc001hnr.1_Splice_Site|uc001hns.1_5'Flank	NM_144695	NP_653296	Q5VW32	BROX_HUMAN	Bro1-domain-containing protein	320	BRO1.					membrane					0				GBM - Glioblastoma multiforme(131;0.0667)		TGAAGAACACCCTAGAAAAATG	0.282													8	186					0	0	6.4e-05	0	0
C1orf55	163859	broad.mit.edu	37	1	226178949	226178949	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:226178949G>A	uc001hpu.3	-	5	689	c.636C>T	c.(634-636)TGC>TGT	p.C212C	C1orf55_uc001hpv.2_Silent_p.C212C	NM_152608	NP_689821	Q6IQ49	CA055_HUMAN	hypothetical protein LOC163859	212										lung(1)	1	Breast(184;0.197)					CTTACCAGAAGCATCTCCTCT	0.438													13	53					0	0	0.000422831	0	0
GJC2	57165	broad.mit.edu	37	1	228346248	228346248	+	Missense_Mutation	SNP	A	C	C			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:228346248A>C	uc001hsk.2	+	2	964	c.789A>C	c.(787-789)GAA>GAC	p.E263D		NM_020435	NP_065168	Q5T442	CXG2_HUMAN	gap junction protein, gamma 2, 47kDa	263	Extracellular (Potential).				cell death	connexon complex|integral to membrane					0		Prostate(94;0.0405)				GCCCTACTGAAAAGACGGTCT	0.637													16	67					0	0	0.000132079	0	0
HEATR1	55127	broad.mit.edu	37	1	236739525	236739525	+	Missense_Mutation	SNP	G	C	C			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:236739525G>C	uc001hyd.1	-	22	3203	c.3078C>G	c.(3076-3078)AAC>AAG	p.N1026K	HEATR1_uc009xgh.1_Missense_Mutation_p.N269K	NM_018072	NP_060542	Q9H583	HEAT1_HUMAN	protein BAP28	1026					rRNA processing	nucleolus|ribonucleoprotein complex	protein binding			ovary(2)|skin(1)	3	Ovarian(103;0.0634)|Breast(184;0.133)	all_cancers(173;0.0255)|Prostate(94;0.175)	OV - Ovarian serous cystadenocarcinoma(106;0.00117)			ATACCTCACCGTTGACTCCCT	0.363													31	102					0	0	0.000409698	0	0
RYR2	6262	broad.mit.edu	37	1	237778068	237778068	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:237778068G>A	uc001hyl.1	+	37	5760	c.5640G>A	c.(5638-5640)GAG>GAA	p.E1880E		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	1880	Cytoplasmic (By similarity).|4 X approximate repeats.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			GAGCTGGTGAGGAAGAAGCCA	0.537													6	39					0	0	0.000157383	0	0
RGS7	6000	broad.mit.edu	37	1	240978044	240978044	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:240978044G>A	uc001hyv.2	-	12	1147	c.817C>T	c.(817-819)CGG>TGG	p.R273W	RGS7_uc010pyh.1_Missense_Mutation_p.R247W|RGS7_uc010pyj.1_Missense_Mutation_p.R189W|RGS7_uc001hyu.2_Missense_Mutation_p.R273W|RGS7_uc009xgn.1_Missense_Mutation_p.R220W|RGS7_uc001hyw.2_Missense_Mutation_p.R273W|RGS7_uc001hyt.2_Missense_Mutation_p.R105W	NM_002924	NP_002915	P49802	RGS7_HUMAN	regulator of G-protein signaling 7	273	G protein gamma.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|protein binding|signal transducer activity			ovary(4)|skin(2)|kidney(1)	7		all_cancers(173;0.0131)	OV - Ovarian serous cystadenocarcinoma(106;0.027)			ATTTTTAACCGATGTCTATCT	0.289													17	95					0	0	0.000229342	0	0
NLRP3	114548	broad.mit.edu	37	1	247588789	247588789	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:247588789G>A	uc001icr.2	+	5	2182	c.2044G>A	c.(2044-2046)GGG>AGG	p.G682R	NLRP3_uc001ics.2_Missense_Mutation_p.G682R|NLRP3_uc001icu.2_Missense_Mutation_p.G682R|NLRP3_uc001icw.2_Missense_Mutation_p.G682R|NLRP3_uc001icv.2_Missense_Mutation_p.G682R|NLRP3_uc010pyw.1_Missense_Mutation_p.G680R|NLRP3_uc001ict.1_Missense_Mutation_p.G680R	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	682					detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding			lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			ACTGTCCCTGGGGTTTCTCCA	0.507													8	39					0	0	0.000442599	0	0
OR2G3	81469	broad.mit.edu	37	1	247769589	247769589	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:247769589G>A	uc010pyz.1	+	1	702	c.702G>A	c.(700-702)AGG>AGA	p.R234R		NM_001001914	NP_001001914	Q8NGZ4	OR2G3_HUMAN	olfactory receptor, family 2, subfamily G,	234	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			TAGAGGCAAGGCACAAAGCCT	0.468													6	26					0	0	3.59834e-05	0	0
OR2W3	343171	broad.mit.edu	37	1	248059688	248059688	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:248059688C>T	uc001idp.1	+	3	1069	c.800C>T	c.(799-801)TCC>TTC	p.S267F	OR2W3_uc010pzb.1_Missense_Mutation_p.S267F	NM_001001957	NP_001001957	Q7Z3T1	OR2W3_HUMAN	olfactory receptor, family 2, subfamily W,	267	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)|pancreas(1)	3	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0319)			GCCAGTTCTTCCCAGGACCAG	0.537													31	39					0	0	0.00058488	0	0
OR2M1P	388762	broad.mit.edu	37	1	248285833	248285833	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:248285833C>T	uc001idy.1	+	1	396	c.396C>T	c.(394-396)TTC>TTT	p.F132F		NR_002141				RecName: Full=Olfactory receptor 2M5;												0						AGGTTATTTTCATTTGCTCTA	0.423													7	52					0	0	8.12818e-05	0	0
OR2M5	127059	broad.mit.edu	37	1	248309067	248309067	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:248309067G>A	uc010pze.1	+	1	618	c.618G>A	c.(616-618)ATG>ATA	p.M206I		NM_001004690	NP_001004690	A3KFT3	OR2M5_HUMAN	olfactory receptor, family 2, subfamily M,	206	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|kidney(1)	3	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0388)			GTATAGTAATGATTGTTTTTC	0.408													15	94					0	0	0.000566183	0	0
UCN3	114131	broad.mit.edu	37	10	5415751	5415751	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr10:5415751C>T	uc001ihx.1	+	2	292	c.68C>T	c.(67-69)CCC>CTC	p.P23L		NM_053049	NP_444277	Q969E3	UCN3_HUMAN	urocortin 3 preproprotein	23						extracellular region	hormone activity				0						ACAGGCCTCCCCCACAAGTTC	0.617													8	31					0	0	0.000274275	0	0
TUBAL3	79861	broad.mit.edu	37	10	5435601	5435601	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr10:5435601G>A	uc001ihy.2	-	4	1260	c.1220C>T	c.(1219-1221)GCC>GTC	p.A407V	TUBAL3_uc001ihz.2_Missense_Mutation_p.A367V	NM_024803	NP_079079	A6NHL2	TBAL3_HUMAN	tubulin, alpha-like 3	407					microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity			skin(1)	1						TGCTCTCTTGGCGTACATGAG	0.577													8	27					0	0	0.000442599	0	0
ITIH2	3698	broad.mit.edu	37	10	7769746	7769746	+	Missense_Mutation	SNP	T	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr10:7769746T>A	uc001ijs.2	+	11	1396	c.1234T>A	c.(1234-1236)TCC>ACC	p.S412T		NM_002216	NP_002207	P19823	ITIH2_HUMAN	inter-alpha globulin inhibitor H2 polypeptide	412	VWFA.				hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(1)|pancreas(1)|skin(1)	3						AGACCCCAACTCCGTCTCGCT	0.438													18	20					0	0	0.00074312	0	0
DHTKD1	55526	broad.mit.edu	37	10	12133596	12133597	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr10:12133596_12133597GG>TT	uc001ild.3	+	6	1171_1172	c.1072_1073GG>TT	c.(1072-1074)GGG>TTG	p.G358L		NM_018706	NP_061176	Q96HY7	DHTK1_HUMAN	dehydrogenase E1 and transketolase domain	358					glycolysis	mitochondrion	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			ovary(1)|central_nervous_system(1)	2		Renal(717;0.228)	BRCA - Breast invasive adenocarcinoma(52;0.188)			CAGAATTGGTGGGAGTGTGCAT	0.441													13	355					0	0	6.4e-05	0	0
CDC123	8872	broad.mit.edu	37	10	12277080	12277081	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr10:12277080_12277081GG>TT	uc001ill.2	+	8	807_808	c.523_524GG>TT	c.(523-525)GGG>TTG	p.G175L	CDC123_uc001ilm.2_Missense_Mutation_p.G175L	NM_006023	NP_006014	O75794	CD123_HUMAN	cell division cycle 123	175					cell cycle arrest|cell division|positive regulation of cell proliferation|regulation of mitotic cell cycle	cytoplasm				central_nervous_system(1)	1						ATTGATTCCTGGGGCTGAGTTT	0.332													16	769					0	0	6.4e-05	0	0
KIAA1462	57608	broad.mit.edu	37	10	30315246	30315246	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr10:30315246C>T	uc001iux.2	-	2	3890	c.3831G>A	c.(3829-3831)AGG>AGA	p.R1277R	KIAA1462_uc001iuy.2_Intron|KIAA1462_uc001iuz.2_Silent_p.R1139R|KIAA1462_uc009xle.1_Silent_p.R1277R	NM_020848	NP_065899	Q9P266	K1462_HUMAN	hypothetical protein LOC57608	1277										ovary(4)	4						AGTCGGCATTCCTGAAGCTCA	0.622													12	23					0	0	0.00010058	0	0
ZEB1	6935	broad.mit.edu	37	10	31803585	31803585	+	Nonsense_Mutation	SNP	A	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr10:31803585A>T	uc001ivs.3	+	6	802	c.739A>T	c.(739-741)AAA>TAA	p.K247*	ZEB1_uc001ivr.3_Nonsense_Mutation_p.K29*|ZEB1_uc010qee.1_Nonsense_Mutation_p.K29*|ZEB1_uc010qef.1_Nonsense_Mutation_p.K29*|ZEB1_uc009xlh.1_RNA|ZEB1_uc009xli.1_RNA|ZEB1_uc009xlj.1_Nonsense_Mutation_p.K173*|ZEB1_uc010qeg.1_Nonsense_Mutation_p.K106*|ZEB1_uc009xlk.1_Nonsense_Mutation_p.K29*|ZEB1_uc001ivt.3_Nonsense_Mutation_p.K29*|ZEB1_uc001ivu.3_Nonsense_Mutation_p.K248*|ZEB1_uc001ivv.3_Nonsense_Mutation_p.K227*|ZEB1_uc010qeh.1_Nonsense_Mutation_p.K180*|ZEB1_uc009xll.2_RNA|ZEB1_uc009xlm.1_RNA|ZEB1_uc009xln.1_RNA|ZEB1_uc009xlo.1_Nonsense_Mutation_p.K230*|ZEB1_uc009xlp.2_Nonsense_Mutation_p.K231*	NM_030751	NP_110378	P37275	ZEB1_HUMAN	zinc finger E-box binding homeobox 1 isoform b	247	C2H2-type 3.				cell proliferation|immune response|negative regulation of transcription from RNA polymerase II promoter|positive regulation of neuron differentiation	cytoplasm	E-box binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(3)|central_nervous_system(2)	5		Prostate(175;0.0156)				TGAGTGTGGAAAAGCTTTCAA	0.328													15	51					0	0	0.000958276	0	0
NRP1	8829	broad.mit.edu	37	10	33510678	33510678	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr10:33510678C>T	uc001iwx.3	-	8	1774	c.1251G>A	c.(1249-1251)ATG>ATA	p.M417I	NRP1_uc001iwv.3_Missense_Mutation_p.M417I|NRP1_uc009xlz.2_Missense_Mutation_p.M417I|NRP1_uc001iww.3_Missense_Mutation_p.M236I|NRP1_uc001iwy.3_Missense_Mutation_p.M417I|NRP1_uc001iwz.2_Missense_Mutation_p.M417I|NRP1_uc001ixa.2_Missense_Mutation_p.M417I|NRP1_uc001ixb.1_Missense_Mutation_p.M417I|NRP1_uc001ixc.1_Missense_Mutation_p.M417I	NM_003873	NP_003864	O14786	NRP1_HUMAN	neuropilin 1 isoform a	417	F5/8 type C 1.|Extracellular (Potential).				axon guidance|cell adhesion|cell-cell signaling|organ morphogenesis|positive regulation of cell proliferation	extracellular region|integral to membrane|plasma membrane	growth factor binding|heparin binding|metal ion binding|vascular endothelial growth factor receptor activity			central_nervous_system(2)|ovary(1)|skin(1)	4					Palifermin(DB00039)|Pegaptanib(DB04895)	CTTCAAATCTCATAGATATGC	0.418													35	73					0	0	0.000191422	0	0
FAM35B2	439965	broad.mit.edu	37	10	47380876	47380876	+	RNA	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr10:47380876G>A	uc010qfz.1	+	1		c.1157G>A				NR_027634				Homo sapiens cDNA FLJ59018 complete cds, highly similar to Protein FAM35A.												0						TACCTCTGAAGATAAAGTGGC	0.393													58	89					0	0	0.000781405	0	0
RBP3	5949	broad.mit.edu	37	10	48389376	48389376	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr10:48389376G>A	uc001jez.2	-	1	1616	c.1502C>T	c.(1501-1503)GCC>GTC	p.A501V		NM_002900	NP_002891	P10745	RET3_HUMAN	retinol-binding protein 3 precursor	501	4 X approximate tandem repeats.|2.				lipid metabolic process|proteolysis|transport|visual perception	interphotoreceptor matrix	retinal binding|serine-type peptidase activity			large_intestine(1)|central_nervous_system(1)	2					Vitamin A(DB00162)	CACGGGGCCGGCCTCAGGGCC	0.642													11	15					0	0	0.000151284	0	0
GDF2	2658	broad.mit.edu	37	10	48414365	48414365	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr10:48414365C>T	uc001jfa.1	-	2	666	c.503G>A	c.(502-504)GGA>GAA	p.G168E		NM_016204	NP_057288	Q9UK05	GDF2_HUMAN	growth differentiation factor 2 precursor	168					activin receptor signaling pathway|BMP signaling pathway|cartilage development|cellular iron ion homeostasis|growth|negative regulation of angiogenesis|negative regulation of blood vessel endothelial cell migration|negative regulation of cell growth|negative regulation of DNA replication|negative regulation of endothelial cell proliferation|ossification|pathway-restricted SMAD protein phosphorylation|patterning of blood vessels|positive regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of transcription, DNA-dependent	extracellular space	cytokine activity|growth factor activity			ovary(2)|skin(1)	3						GACCACGCTTCCTTTCAGGTC	0.507													17	24					0	0	0.000132079	0	0
ERCC6	2074	broad.mit.edu	37	10	50681610	50681610	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr10:50681610G>A	uc001jhs.3	-	14	2776	c.2622C>T	c.(2620-2622)TTC>TTT	p.F874F	ERCC6_uc009xod.2_Silent_p.F34F|ERCC6_uc010qgr.1_Silent_p.F244F|ERCC6_uc001jhr.3_Silent_p.F242F	NM_000124	NP_000115	Q03468	ERCC6_HUMAN	excision repair cross-complementing rodent	874	Helicase C-terminal.				base-excision repair|positive regulation of transcription elongation, DNA-dependent|transcription from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair	nucleolus|soluble fraction|transcription elongation factor complex	ATP binding|chromatin binding|DNA binding|DNA-dependent ATPase activity|helicase activity|protein C-terminus binding|protein complex binding|protein N-terminus binding			lung(5)|breast(5)|ovary(3)|large_intestine(2)|skin(1)	16						GGGCTCTAAGGAATACTTCAA	0.413								Direct_reversal_of_damage|NER					41	65					0	0	0.000781405	0	0
SGMS1	259230	broad.mit.edu	37	10	52103437	52103437	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr10:52103437G>A	uc001jje.2	-	7	1392	c.438C>T	c.(436-438)TTC>TTT	p.F146F	SGMS1_uc010qhk.1_Intron|SGMS1_uc009xot.1_Intron|SGMS1_uc009xou.1_Silent_p.F146F|SGMS1_uc010qhl.1_RNA	NM_147156	NP_671512	Q86VZ5	SMS1_HUMAN	sphingomyelin synthase 1	152	Helical; (Potential).				apoptosis|cell growth|sphingomyelin biosynthetic process	endoplasmic reticulum|Golgi trans cisterna|integral to Golgi membrane|nucleus|plasma membrane	ceramide cholinephosphotransferase activity|kinase activity|sphingomyelin synthase activity			ovary(1)|kidney(1)	2						TGGTGAGAACGAAACAGGAAA	0.502													7	25					0	0	0.000157383	0	0
Unknown	0	broad.mit.edu	37	10	52389895	52389895	+	RNA	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr10:52389895C>T	uc001jjf.1	+	2		c.588C>T								Homo sapiens cDNA FLJ12320 fis, clone MAMMA1002082.																		TATGCTGGGTCGTTTTCCTGA	0.403													6	10					0	0	0.000157383	0	0
TFAM	7019	broad.mit.edu	37	10	60148505	60148506	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr10:60148505_60148506CC>AA	uc001jkf.2	+	4	499_500	c.367_368CC>AA	c.(367-369)CCA>AAA	p.P123K	TFAM_uc001jkg.2_RNA|TFAM_uc001jkh.2_Missense_Mutation_p.P123K	NM_003201	NP_003192	Q00059	TFAM_HUMAN	transcription factor A, mitochondrial precursor	123					DNA-dependent DNA replication|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase I promoter|transcription initiation from mitochondrial promoter	mitochondrial nucleoid	mitochondrial light strand promoter sense binding|protein binding|sequence-specific DNA binding transcription factor activity				0						ACAGCTAACTCCAAGTCAGATT	0.302													10	272					0	0	6.4e-05	0	0
ANK3	288	broad.mit.edu	37	10	61802491	61802491	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr10:61802491C>T	uc001jky.2	-	43	13284	c.13092G>A	c.(13090-13092)ACG>ACA	p.T4364T	ANK3_uc001jkw.2_Silent_p.T988T|ANK3_uc009xpa.2_Silent_p.T987T|ANK3_uc001jkx.2_Silent_p.T1031T|ANK3_uc010qih.1_Silent_p.T1855T|ANK3_uc001jkz.3_Silent_p.T1848T|ANK3_uc001jkv.2_Silent_p.T387T	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	4364					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TTTCTTTCTTCGTTTTCACCT	0.398													26	71					0	0	0.000339439	0	0
ANK3	288	broad.mit.edu	37	10	61833835	61833835	+	Silent	SNP	T	C	C			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr10:61833835T>C	uc001jky.2	-	37	6996	c.6804A>G	c.(6802-6804)GAA>GAG	p.E2268E	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	2268					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						ACATGGTTTCTTCAATTCTTT	0.478													15	53					0	0	0.00074312	0	0
PBLD	64081	broad.mit.edu	37	10	70044013	70044013	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr10:70044013C>T	uc001jns.1	-	10	991	c.788G>A	c.(787-789)GGA>GAA	p.G263E	PBLD_uc001jnr.1_Missense_Mutation_p.G230E|PBLD_uc001jnt.1_Missense_Mutation_p.G263E	NM_022129	NP_071412	P30039	PBLD_HUMAN	MAWD binding protein isoform a	263					biosynthetic process		isomerase activity			skin(2)|ovary(1)	3						AAGGGAAATTCCCAGCTCTCC	0.443													19	68					0	0	0.000375601	0	0
SYNPO2L	79933	broad.mit.edu	37	10	75407338	75407338	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr10:75407338C>T	uc001jut.3	-	4	2224	c.2072G>A	c.(2071-2073)GGG>GAG	p.G691E	SYNPO2L_uc001jus.3_Missense_Mutation_p.G467E	NM_001114133	NP_001107605	Q9H987	SYP2L_HUMAN	synaptopodin 2-like isoform a	691	Pro-rich.					cytoplasm|cytoskeleton	actin binding			ovary(1)	1	Prostate(51;0.0112)					ACTCCTGGCCCCTACTGGCTG	0.602													20	47					0	0	0.000132079	0	0
MMRN2	79812	broad.mit.edu	37	10	88702347	88702347	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr10:88702347C>T	uc001kea.2	-	6	2321	c.2194G>A	c.(2194-2196)GGC>AGC	p.G732S	MMRN2_uc010qmn.1_Missense_Mutation_p.G375S|MMRN2_uc009xtb.2_Missense_Mutation_p.G689S	NM_024756	NP_079032	Q9H8L6	MMRN2_HUMAN	multimerin 2 precursor	732						extracellular space				large_intestine(1)	1						TTGTGGAGGCCGTGAAGGGAG	0.662													10	18					0	0	6.40141e-05	0	0
IDE	3416	broad.mit.edu	37	10	94274782	94274783	+	Nonsense_Mutation	DNP	CC	AA	AA			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr10:94274782_94274783CC>AA	uc001kia.2	-	5	754_755	c.678_679GG>TT	c.(676-681)CTGGAG>CTTTAG	p.E227*		NM_004969	NP_004960	P14735	IDE_HUMAN	insulin-degrading enzyme isoform 1 precursor	227					beta-amyloid metabolic process|bradykinin catabolic process|interspecies interaction between organisms|sex differentiation	cell surface|extracellular space|soluble fraction	ATP binding|metalloendopeptidase activity|protein homodimerization activity|signal transducer activity|zinc ion binding			ovary(2)|central_nervous_system(1)	3					Bacitracin(DB00626)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	GGTCTAGTCTCCAGAGTATATT	0.342													12	564					0	0	6.4e-05	0	0
KIF11	3832	broad.mit.edu	37	10	94366382	94366383	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr10:94366382_94366383GG>TT	uc001kic.2	+	3	525_526	c.217_218GG>TT	c.(217-219)GGA>TTA	p.G73L	KIF11_uc010qnq.1_Intron	NM_004523	NP_004514	P52732	KIF11_HUMAN	kinesin family member 11	73	Kinesin-motor.				blood coagulation|cell division|microtubule-based movement|spindle assembly involved in mitosis	chromatin remodeling complex|cytosol|kinesin complex|microtubule|spindle pole	ATP binding|microtubule motor activity|protein kinase binding			skin(1)	1						TTAGGTGTTTGGAGCATCTACT	0.282													16	726					0	0	6.4e-05	0	0
KIF11	3832	broad.mit.edu	37	10	94373217	94373218	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr10:94373217_94373218CC>AA	uc001kic.2	+	8	1181_1182	c.873_874CC>AA	c.(871-876)TCCCTG>TCAATG	p.L292M	KIF11_uc010qnq.1_Intron	NM_004523	NP_004514	P52732	KIF11_HUMAN	kinesin family member 11	292	Kinesin-motor.				blood coagulation|cell division|microtubule-based movement|spindle assembly involved in mitosis	chromatin remodeling complex|cytosol|kinesin complex|microtubule|spindle pole	ATP binding|microtubule motor activity|protein kinase binding			skin(1)	1						TAAATCAATCCCTGTTGACTTT	0.401													15	445					0	0	6.4e-05	0	0
CYP2C19	1557	broad.mit.edu	37	10	96535211	96535211	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr10:96535211G>A	uc010qnz.1	+	3	396	c.396G>A	c.(394-396)CGG>CGA	p.R132R	CYP2C19_uc009xus.1_Intron|CYP2C19_uc010qny.1_Silent_p.R110R	NM_000769	NP_000760	P33261	CP2CJ_HUMAN	cytochrome P450, family 2, subfamily C,	132			R -> Q (in allele CYP2C19*6; loss of activity).		exogenous drug catabolic process|heterocycle metabolic process|monoterpenoid metabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|electron carrier activity|enzyme binding|heme binding|oxygen binding|steroid hydroxylase activity			ovary(4)|central_nervous_system(1)|skin(1)	6		Colorectal(252;0.09)		all cancers(201;6.02e-07)|KIRC - Kidney renal clear cell carcinoma(50;0.0672)|Kidney(138;0.0838)	Adinazolam(DB00546)|Aminophenazone(DB01424)|Amitriptyline(DB00321)|Amoxicillin(DB01060)|Arformoterol(DB01274)|Bortezomib(DB00188)|Carisoprodol(DB00395)|Chlorzoxazone(DB00356)|Cilostazol(DB01166)|Citalopram(DB00215)|Clarithromycin(DB01211)|Clobazam(DB00349)|Desipramine(DB01151)|Desloratadine(DB00967)|Diclofenac(DB00586)|Diltiazem(DB00343)|Efavirenz(DB00625)|Esomeprazole(DB00736)|Famotidine(DB00927)|Felbamate(DB00949)|Finasteride(DB01216)|Flunitrazepam(DB01544)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Fosphenytoin(DB01320)|Guanfacine(DB01018)|Imipramine(DB00458)|Indomethacin(DB00328)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Lapatinib(DB01259)|Loratadine(DB00455)|Melatonin(DB01065)|Mephenytoin(DB00532)|Methadone(DB00333)|Methylphenobarbital(DB00849)|Moclobemide(DB01171)|Modafinil(DB00745)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Nilutamide(DB00665)|Norgestrel(DB00506)|Omeprazole(DB00338)|Oxcarbazepine(DB00776)|Pantoprazole(DB00213)|Pentamidine(DB00738)|Phenobarbital(DB01174)|Phenytoin(DB00252)|Primidone(DB00794)|Progesterone(DB00396)|Proguanil(DB01131)|Promazine(DB00420)|Quinidine(DB00908)|Rabeprazole(DB01129)|Ranitidine(DB00863)|Ritonavir(DB00503)|Selegiline(DB01037)|Sertraline(DB01104)|Temazepam(DB00231)|Teniposide(DB00444)|Terfenadine(DB00342)|Thalidomide(DB01041)|Thioridazine(DB00679)|Ticlopidine(DB00208)|Tolbutamide(DB01124)|Topiramate(DB00273)|Tranylcypromine(DB00752)|Troglitazone(DB00197)|Troleandomycin(DB01361)|Voriconazole(DB00582)	TGACGCTGCGGAATTTTGGGA	0.507													19	45					0	0	0.000229342	0	0
ARL3	403	broad.mit.edu	37	10	104459196	104459196	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr10:104459196C>T	uc001kwa.2	-	3	356	c.198G>A	c.(196-198)TGG>TGA	p.W66*		NM_004311	NP_004302	P36405	ARL3_HUMAN	ADP-ribosylation factor-like 3	66					cell cycle|cytokinesis|small GTPase mediated signal transduction	centrosome|cytoplasmic microtubule|Golgi membrane|midbody|nucleus|photoreceptor connecting cilium|spindle microtubule	GDP binding|GTP binding|metal ion binding|microtubule binding				0		Colorectal(252;0.122)		Epithelial(162;4.88e-09)|all cancers(201;1.29e-07)|BRCA - Breast invasive adenocarcinoma(275;0.22)		CACCAATGTCCCATACATTCA	0.338													10	26					0	0	0.000673444	0	0
DMBT1	1755	broad.mit.edu	37	10	124395566	124395566	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr10:124395566C>T	uc001lgk.1	+	50	6327	c.6221C>T	c.(6220-6222)TCC>TTC	p.S2074F	DMBT1_uc001lgl.1_Missense_Mutation_p.S2064F|DMBT1_uc001lgm.1_Missense_Mutation_p.S1446F|DMBT1_uc009xzz.1_Missense_Mutation_p.S2073F|DMBT1_uc010qtx.1_Missense_Mutation_p.S794F|DMBT1_uc009yab.1_Missense_Mutation_p.S777F|DMBT1_uc009yac.1_Missense_Mutation_p.S368F	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	2074	CUB 2.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				TACCGCAGTTCCCCTCTCATT	0.502													13	49					0	0	0.000219431	0	0
CUZD1	50624	broad.mit.edu	37	10	124593240	124593240	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr10:124593240G>A	uc001lgq.2	-	8	1931	c.1599C>T	c.(1597-1599)TCC>TCT	p.S533S	CUZD1_uc001lgp.2_Silent_p.S252S|CUZD1_uc009yad.2_Silent_p.S252S|CUZD1_uc009yaf.2_Silent_p.S167S|CUZD1_uc001lgr.2_Silent_p.S252S|CUZD1_uc010qty.1_Silent_p.S252S|CUZD1_uc009yae.2_Silent_p.S252S|CUZD1_uc001lgs.2_Silent_p.S533S|CUZD1_uc010qtz.1_Silent_p.S533S	NM_022034	NP_071317	Q86UP6	CUZD1_HUMAN	CUB and zona pellucida-like domains 1 precursor	533	Extracellular (Potential).				cell cycle|cell division|cell proliferation|substrate-dependent cell migration, cell attachment to substrate|trypsinogen activation	integral to membrane|transport vesicle membrane|zymogen granule membrane				ovary(1)|skin(1)	2		all_neural(114;0.169)|Glioma(114;0.222)		Colorectal(40;0.126)|COAD - Colon adenocarcinoma(40;0.141)		GTCCTATGATGGAATCTGTTT	0.408													47	78					0	0	0.000781405	0	0
CPXM2	119587	broad.mit.edu	37	10	125521563	125521563	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr10:125521563C>T	uc001lhk.1	-	11	1927	c.1602G>A	c.(1600-1602)TGG>TGA	p.W534*	CPXM2_uc001lhj.2_RNA	NM_198148	NP_937791	Q8N436	CPXM2_HUMAN	carboxypeptidase X (M14 family), member 2	534					cell adhesion|proteolysis	extracellular space	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2		all_lung(145;0.174)|Colorectal(57;0.178)|Glioma(114;0.222)|all_neural(114;0.226)|Lung NSC(174;0.233)		COAD - Colon adenocarcinoma(40;0.212)|Colorectal(40;0.237)		CCTGCGTCTTCCAGGGGGACC	0.642													15	34					0	0	0.000308642	0	0
MUC6	4588	broad.mit.edu	37	11	1017387	1017388	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr11:1017387_1017388CC>AA	uc001lsw.2	-	31	5464_5465	c.5413_5414GG>TT	c.(5413-5415)GGG>TTG	p.G1805L		NM_005961	NP_005952	Q6W4X9	MUC6_HUMAN	mucin 6, gastric	1805	Thr-rich.|2.|Approximate repeats.				maintenance of gastrointestinal epithelium	extracellular region	extracellular matrix structural constituent			ovary(1)	1		all_cancers(49;3.3e-08)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		all cancers(45;1.24e-24)|BRCA - Breast invasive adenocarcinoma(625;0.00031)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)		GGGAGTGGTCCCTGTAGGTGGG	0.594													14	409					0	0	6.4e-05	0	0
MUC5B	727897	broad.mit.edu	37	11	1156652	1156652	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr11:1156652C>T	uc009ycr.1	+	7	795	c.669C>T	c.(667-669)CTC>CTT	p.L223L		NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		TCAGCGAGCTCCTCTCCCACA	0.612													9	18					0	0	0.000442599	0	0
KRTAP5-1	387264	broad.mit.edu	37	11	1605974	1605974	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr11:1605974G>A	uc001ltu.1	-	1	540	c.506C>T	c.(505-507)TCT>TTT	p.S169F	LOC338651_uc009ycx.1_Intron|LOC338651_uc001ltt.1_Intron	NM_001005922	NP_001005922	Q6L8H4	KRA51_HUMAN	keratin associated protein 5-1	169	8 X 4 AA repeats of C-C-X-P.					keratin filament					0		all_epithelial(84;0.00018)|Ovarian(85;0.0014)|Breast(177;0.00147)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.000614)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		GCCCCCACAAGAACCACAGGC	0.662													17	28					0	0	0.000566183	0	0
ZNF195	7748	broad.mit.edu	37	11	3381470	3381470	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr11:3381470G>A	uc001lxt.2	-	6	946	c.768C>T	c.(766-768)CTC>CTT	p.L256L	uc001lxr.2_5'Flank|ZNF195_uc001lxv.2_Silent_p.L233L|ZNF195_uc001lxs.2_Silent_p.L184L|ZNF195_uc010qxr.1_Silent_p.L237L|ZNF195_uc009ydz.2_Silent_p.L211L|ZNF195_uc001lxu.2_Silent_p.L188L	NM_001130520	NP_001123992	O14628	ZN195_HUMAN	zinc finger protein 195 isoform 1	256	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Medulloblastoma(188;0.00106)|Breast(177;0.00328)|all_neural(188;0.00681)|Ovarian(85;0.00965)		BRCA - Breast invasive adenocarcinoma(625;0.0361)|LUSC - Lung squamous cell carcinoma(625;0.2)		TTAGGAATGAGAGCATTTGAA	0.328													6	43					0	0	0.000274275	0	0
OR52I1	390037	broad.mit.edu	37	11	4616195	4616195	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr11:4616195G>A	uc010qyi.1	+	1	927	c.927G>A	c.(925-927)TGG>TGA	p.W309*		NM_001005169	NP_001005169	Q8NGK6	O52I1_HUMAN	olfactory receptor, family 52, subfamily I,	309	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)	2		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;7.98e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0284)|LUSC - Lung squamous cell carcinoma(625;0.19)		AGGGAATATGGAGTTATCTGA	0.463													13	48					0	0	0.00010058	0	0
UBQLN3	50613	broad.mit.edu	37	11	5529836	5529836	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr11:5529836C>T	uc001may.1	-	2	1039	c.953G>A	c.(952-954)GGA>GAA	p.G318E	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_5'Flank|OR51B5_uc001maq.1_5'Flank	NM_017481	NP_059509	Q9H347	UBQL3_HUMAN	ubiquilin 3	318										ovary(3)	3		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;1.74e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		ATCCTGCCTTCCTTGCCTGCT	0.502													9	33					0	0	0.000673444	0	0
TRIM22	10346	broad.mit.edu	37	11	5730807	5730807	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr11:5730807C>T	uc001mbr.2	+	8	1703	c.1426C>T	c.(1426-1428)CGA>TGA	p.R476*	TRIM5_uc001mbq.1_Intron|TRIM22_uc009yet.1_Intron|TRIM22_uc009yes.2_Nonsense_Mutation_p.R472*|TRIM22_uc010qzm.1_Nonsense_Mutation_p.R304*|TRIM22_uc009yeu.2_Nonsense_Mutation_p.R287*|OR56B1_uc001mbs.1_Intron|OR56B1_uc009yev.1_Intron	NM_006074	NP_006065	Q8IYM9	TRI22_HUMAN	tripartite motif-containing 22	476	B30.2/SPRY.				immune response|interspecies interaction between organisms|protein trimerization|response to virus	Cajal body|Golgi apparatus|nuclear speck	ligase activity|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding				0		Medulloblastoma(188;0.00225)|Breast(177;0.0204)|all_neural(188;0.0212)		Epithelial(150;7.54e-09)|BRCA - Breast invasive adenocarcinoma(625;0.14)		TCGCTTTTCTCGACCTGCTTA	0.473													16	140					0	0	0.000958276	0	0
OR56B1	387748	broad.mit.edu	37	11	5758241	5758241	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr11:5758241C>T	uc001mbt.1	+	1	495	c.495C>T	c.(493-495)GTC>GTT	p.V165V	TRIM5_uc001mbq.1_Intron|TRIM22_uc009yet.1_Intron|OR56B1_uc001mbs.1_Silent_p.V165V|OR56B1_uc009yev.1_Silent_p.V165V	NM_001005180	NP_001005180	Q8NGI3	O56B1_HUMAN	olfactory receptor, family 56, subfamily B,	165	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.086)		Epithelial(150;1.74e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.184)		GCTTATTTGTCACTCCAGTGC	0.463													6	35					0	0	0.000157383	0	0
ARFIP2	23647	broad.mit.edu	37	11	6499989	6499989	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr11:6499989G>A	uc001mdk.2	-	5	653	c.516C>T	c.(514-516)AGC>AGT	p.S172S	ARFIP2_uc001mdl.2_Silent_p.S172S|ARFIP2_uc010ral.1_Silent_p.S134S|ARFIP2_uc010ram.1_Silent_p.S78S|ARFIP2_uc010ran.1_Silent_p.S205S|ARFIP2_uc001mdm.2_Intron|FXC1_uc001mdn.3_5'Flank|FXC1_uc001mdo.3_5'Flank	NM_012402	NP_036534	P53365	ARFP2_HUMAN	ADP-ribosylation factor interacting protein 2	172	AH.				actin cytoskeleton organization|cellular component movement|lamellipodium assembly|ruffle organization|small GTPase mediated signal transduction	cell cortex|plasma membrane|ruffle	GTP binding|GTP-dependent protein binding|Rac GTPase binding				0		Medulloblastoma(188;0.00263)|all_neural(188;0.026)|Breast(177;0.029)		Epithelial(150;3.41e-08)|BRCA - Breast invasive adenocarcinoma(625;0.189)		GGGACTTCTGGCTGAGGTCAG	0.622													4	19					0	0	0.000602214	0	0
OR10A4	283297	broad.mit.edu	37	11	6898300	6898300	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr11:6898300C>T	uc010rat.1	+	1	422	c.422C>T	c.(421-423)TCC>TTC	p.S141F		NM_207186	NP_997069	Q9H209	O10A4_HUMAN	olfactory receptor, family 10, subfamily A,	141	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.78e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		GGCCACATATCCTGTGCCCAG	0.562													8	16					0	0	0.000442599	0	0
OR5P2	120065	broad.mit.edu	37	11	7817599	7817599	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr11:7817599C>T	uc001mfp.1	-	1	891	c.891G>A	c.(889-891)CTG>CTA	p.L297L		NM_153444	NP_703145	Q8WZ92	OR5P2_HUMAN	olfactory receptor, family 5, subfamily P,	297	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				Epithelial(150;8.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.189)		GCTCTCTCTTCAGAGCCCCCT	0.408													12	15					0	0	0.00010058	0	0
OR10A6	390093	broad.mit.edu	37	11	7950061	7950061	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr11:7950061G>A	uc010rbh.1	-	1	149	c.149C>T	c.(148-150)TCC>TTC	p.S50F		NM_001004461	NP_001004461	Q8NH74	O10A6_HUMAN	olfactory receptor, family 10, subfamily A,	50	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2				Epithelial(150;1.38e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		CTGGTCTAGGGAGACGATGAC	0.463													9	34					0	0	0.000673444	0	0
NLRP10	338322	broad.mit.edu	37	11	7982175	7982175	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr11:7982175G>A	uc001mfv.1	-	2	1001	c.984C>T	c.(982-984)TTC>TTT	p.F328F		NM_176821	NP_789791	Q86W26	NAL10_HUMAN	NLR family, pyrin domain containing 10	328	NACHT.						ATP binding			lung(4)|ovary(2)|pancreas(1)|kidney(1)|skin(1)	9				Epithelial(150;1.47e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		TCTCATCCGTGAAATAGGAGC	0.502													13	75					0	0	0.00010058	0	0
SOX6	55553	broad.mit.edu	37	11	15994523	15994523	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr11:15994523G>A	uc001mme.2	-	16	2391	c.2358C>T	c.(2356-2358)CTC>CTT	p.L786L	SOX6_uc001mmd.2_Silent_p.L749L|SOX6_uc001mmf.2_Silent_p.L746L|SOX6_uc001mmg.2_Silent_p.L753L	NM_001145819	NP_001139291	P35712	SOX6_HUMAN	SRY (sex determining region Y)-box 6 isoform 4	773					muscle organ development	nucleus	sequence-specific DNA binding transcription factor activity			ovary(3)	3						GGATGACCGGGAGGCTGGGCT	0.507													20	26					0	0	0.00047179	0	0
ABCC8	6833	broad.mit.edu	37	11	17464857	17464857	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr11:17464857G>A	uc001mnc.2	-	9	1461	c.1335C>T	c.(1333-1335)ATC>ATT	p.I445I	ABCC8_uc010rcy.1_Silent_p.I444I	NM_000352	NP_000343	Q09428	ABCC8_HUMAN	ATP-binding cassette, sub-family C, member 8	445	Helical; Name=8; (By similarity).|ABC transmembrane type-1 1.				carbohydrate metabolic process|energy reserve metabolic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium ion transmembrane transporter activity|sulfonylurea receptor activity			ovary(1)	1				READ - Rectum adenocarcinoma(2;0.0325)|Colorectal(2;0.1)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)|Gliclazide(DB01120)|Mitiglinide(DB01252)|Nateglinide(DB00731)|Repaglinide(DB00912)	CACCCACAATGATCTGAGGAA	0.537													38	114					0	0	0.000374591	0	0
ABCC8	6833	broad.mit.edu	37	11	17483330	17483331	+	Nonsense_Mutation	DNP	CG	AT	AT			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr11:17483330_17483331CG>AT	uc001mnc.2	-	5	747_748	c.621_622CG>AT	c.(619-624)CCCGAG>CCATAG	p.E208*	ABCC8_uc010rcy.1_Nonsense_Mutation_p.E208*	NM_000352	NP_000343	Q09428	ABCC8_HUMAN	ATP-binding cassette, sub-family C, member 8	208	Cytoplasmic (By similarity).				carbohydrate metabolic process|energy reserve metabolic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium ion transmembrane transporter activity|sulfonylurea receptor activity			ovary(1)	1				READ - Rectum adenocarcinoma(2;0.0325)|Colorectal(2;0.1)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)|Gliclazide(DB01120)|Mitiglinide(DB01252)|Nateglinide(DB00731)|Repaglinide(DB00912)	TGCAGGTCCTCGGGAGGCTTCA	0.569													7	311					0	0	6.4e-05	0	0
SERGEF	26297	broad.mit.edu	37	11	18017361	18017361	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr11:18017361C>T	uc001mnm.2	-	6	684	c.604G>A	c.(604-606)GAA>AAA	p.E202K	SERGEF_uc009yhd.2_RNA|SERGEF_uc001mnn.2_Missense_Mutation_p.E202K|SERGEF_uc010rcz.1_Missense_Mutation_p.E88K|SERGEF_uc001mno.1_Missense_Mutation_p.E88K	NM_012139	NP_036271	Q9UGK8	SRGEF_HUMAN	deafness locus associated putative guanine	202	RCC1 4.				negative regulation of protein secretion|signal transduction	cytoplasm|nucleus	protein binding|Ran guanyl-nucleotide exchange factor activity			central_nervous_system(1)	1						CTGCTTGGTTCCTTTGCTGTG	0.463													5	10					0	0	0.000602214	0	0
LDHAL6A	160287	broad.mit.edu	37	11	18500292	18500293	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr11:18500292_18500293CC>AA	uc001mop.1	+	8	1135_1136	c.874_875CC>AA	c.(874-876)CCA>AAA	p.P292K	LDHAL6A_uc001moq.2_Missense_Mutation_p.P292K	NM_001144071	NP_001137543	Q6ZMR3	LDH6A_HUMAN	lactate dehydrogenase A-like 6A	292					glycolysis	cytoplasm	binding|L-lactate dehydrogenase activity				0					NADH(DB00157)	CCTTAGTGTCCCATGTATCCTG	0.371													13	278					0	0	6.4e-05	0	0
MRGPRX2	117194	broad.mit.edu	37	11	19077497	19077497	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr11:19077497G>A	uc001mph.2	-	2	541	c.453C>T	c.(451-453)GTC>GTT	p.V151V		NM_054030	NP_473371	Q96LB1	MRGX2_HUMAN	MAS-related GPR, member X2	151	Helical; Name=4; (Potential).				sensory perception of pain|sleep	plasma membrane	G-protein coupled receptor activity|neuropeptide binding			ovary(1)	1						CCCAGAGCAGGACACACACGA	0.582													18	39					0	0	0.00074312	0	0
NAV2	89797	broad.mit.edu	37	11	20104716	20104716	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr11:20104716C>T	uc001mpr.3	+	26	5859	c.5498C>T	c.(5497-5499)TCC>TTC	p.S1833F	NAV2_uc001mpp.2_Missense_Mutation_p.S1766F|NAV2_uc009yhx.2_Missense_Mutation_p.S894F|NAV2_uc009yhz.2_Missense_Mutation_p.S475F|NAV2_uc001mpu.2_Missense_Mutation_p.S268F	NM_182964	NP_892009	Q8IVL1	NAV2_HUMAN	neuron navigator 2 isoform 1	1889						nucleus	ATP binding|helicase activity			skin(4)|ovary(1)|pancreas(1)	6						AATTCTCACTCCAACTCTCTG	0.483													11	102					0	0	6.40141e-05	0	0
LUZP2	338645	broad.mit.edu	37	11	24750756	24750756	+	Missense_Mutation	SNP	T	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr11:24750756T>A	uc001mqs.2	+	2	338	c.104T>A	c.(103-105)TTT>TAT	p.F35Y	LUZP2_uc009yif.2_5'UTR|LUZP2_uc009yig.2_Missense_Mutation_p.F35Y	NM_001009909	NP_001009909	Q86TE4	LUZP2_HUMAN	leucine zipper protein 2 precursor	35	Potential.					extracellular region				ovary(1)|skin(1)	2						AAAGAAGTCTTTAAGGAGCGA	0.433													6	40					0	0	0.000157383	0	0
MPPED2	744	broad.mit.edu	37	11	30557687	30557687	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr11:30557687G>A	uc001msr.2	-	2	284	c.164C>T	c.(163-165)GCG>GTG	p.A55V	MPPED2_uc001msq.3_Missense_Mutation_p.A55V|MPPED2_uc009yji.2_5'UTR	NM_001584	NP_001575	Q15777	MPPD2_HUMAN	metallophosphoesterase domain containing 2	55					nervous system development		hydrolase activity|metal ion binding			skin(1)	1						CGTGTGGCCCGCTGGTTTTGG	0.483													9	27					0	0	0.000673444	0	0
TCP11L1	55346	broad.mit.edu	37	11	33065453	33065454	+	Nonsense_Mutation	DNP	CC	AA	AA			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr11:33065453_33065454CC>AA	uc001mud.2	+	2	534_535	c.134_135CC>AA	c.(133-135)TCC>TAA	p.S45*	TCP11L1_uc009yju.2_5'UTR|TCP11L1_uc010rei.1_Nonsense_Mutation_p.S45*|TCP11L1_uc001mue.2_Nonsense_Mutation_p.S45*	NM_018393	NP_060863	Q9NUJ3	T11L1_HUMAN	t-complex 11 (mouse) like 1	45											0						TCAGACTCCTCCAGCCCCCAAA	0.436													9	224					0	0	6.4e-05	0	0
LMO2	4005	broad.mit.edu	37	11	33880940	33880940	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr11:33880940C>T	uc001mve.2	-	3	878	c.439G>A	c.(439-441)GAC>AAC	p.D147N	LMO2_uc001mvc.2_Missense_Mutation_p.D140N|LMO2_uc001mvd.2_Missense_Mutation_p.D140N|LMO2_uc010rel.1_Missense_Mutation_p.D147N|LMO2_uc010rem.1_Missense_Mutation_p.D216N	NM_001142316	NP_001135788	P25791	RBTN2_HUMAN	LIM domain only 2 isoform 2	147	LIM zinc-binding 2.				multicellular organismal development	nucleus	protein binding|zinc ion binding			lung(1)	1						TCGTAGATGTCCTGTTCGCAC	0.502			T	TRD@	T-ALL								25	42					0	0	0.000279167	0	0
PRR5L	79899	broad.mit.edu	37	11	36453412	36453412	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr11:36453412C>T	uc001mwo.3	+	5	693	c.304C>T	c.(304-306)CTT>TTT	p.L102F	PRR5L_uc001mwp.2_Missense_Mutation_p.L102F|PRR5L_uc009ykk.2_Missense_Mutation_p.L21F|PRR5L_uc010rfc.1_Missense_Mutation_p.L102F	NM_001160167	NP_001153639	Q6MZQ0	PRR5L_HUMAN	protor-2 isoform a	102										ovary(1)	1						GAACCAGCTTCTTGCAAAAGG	0.483													8	74					0	0	0.000673444	0	0
RAG2	5897	broad.mit.edu	37	11	36615566	36615566	+	Missense_Mutation	SNP	C	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr11:36615566C>A	uc001mwv.3	-	2	341	c.153G>T	c.(151-153)AAG>AAT	p.K51N	C11orf74_uc010rfd.1_5'Flank|C11orf74_uc001mww.1_5'Flank|C11orf74_uc001mwx.1_5'Flank|C11orf74_uc001mwy.1_5'Flank|C11orf74_uc001mwz.1_5'Flank|C11orf74_uc010rfe.1_5'Flank	NM_000536	NP_000527	P55895	RAG2_HUMAN	recombination activating gene 2	51					chromatin modification|pre-B cell allelic exclusion|somatic diversification of immunoglobulins|T cell differentiation in thymus|V(D)J recombination	nucleus	chromatin binding|DNA binding|endonuclease activity|methylated histone residue binding|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|phosphatidylinositol-3,5-bisphosphate binding|phosphatidylinositol-4,5-bisphosphate binding|zinc ion binding			skin(3)|ovary(1)|pancreas(1)	5	all_lung(20;0.226)	all_hematologic(20;0.00756)				CATGGTTATGCTTTACATCCA	0.458									Familial_Hemophagocytic_Lymphohistiocytosis				19	108					8.00594e-06	9.98439e-05	0.000958276	1	0
LRRC4C	57689	broad.mit.edu	37	11	40136709	40136709	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr11:40136709G>A	uc001mxa.1	-	2	3098	c.1134C>T	c.(1132-1134)TCC>TCT	p.S378S	LRRC4C_uc001mxc.1_Silent_p.S374S|LRRC4C_uc001mxd.1_Silent_p.S374S|LRRC4C_uc001mxb.1_Silent_p.S374S	NM_020929	NP_065980	Q9HCJ2	LRC4C_HUMAN	netrin-G1 ligand precursor	378	Ig-like C2-type.				regulation of axonogenesis	integral to membrane	protein binding			ovary(4)|skin(3)|central_nervous_system(1)	8		all_lung(304;0.0575)|Lung NSC(402;0.138)				TCAGGGATGTGGAGGCCCGAC	0.502													15	63					0	0	0.000308642	0	0
CREB3L1	90993	broad.mit.edu	37	11	46341862	46341862	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr11:46341862G>A	uc001ncf.2	+	11	1741	c.1306G>A	c.(1306-1308)GAA>AAA	p.E436K	CREB3L1_uc001ncg.2_Missense_Mutation_p.E70K	NM_052854	NP_443086	Q96BA8	CR3L1_HUMAN	cAMP responsive element binding protein 3-like	436	Lumenal (Potential).				response to unfolded protein	endoplasmic reticulum membrane|integral to membrane|nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		FUS/CREB3L1(6)	soft_tissue(6)|ovary(2)	8				GBM - Glioblastoma multiforme(35;0.0285)		AGGCTTATGGGAAGATGGCCG	0.647			T	FUS	myxofibrosarcoma								6	8					0	0	0.000274275	0	0
NUP160	23279	broad.mit.edu	37	11	47825067	47825067	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr11:47825067G>A	uc001ngm.2	-	22	2783	c.2698C>T	c.(2698-2700)CCC>TCC	p.P900S	NUP160_uc009ylw.2_RNA	NM_015231	NP_056046	Q12769	NU160_HUMAN	nucleoporin 160kDa	900					carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA export from nucleus|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|Nup107-160 complex	nucleocytoplasmic transporter activity|protein binding			ovary(4)|lung(1)|central_nervous_system(1)|skin(1)	7						TGACACCAGGGATGTAGCAGT	0.378													43	48					0	0	0.000781405	0	0
TRIM48	79097	broad.mit.edu	37	11	55036750	55036750	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr11:55036750C>T	uc010rid.1	+	5	697	c.611C>T	c.(610-612)CCT>CTT	p.P204L		NM_024114	NP_077019	Q8IWZ4	TRI48_HUMAN	tripartite motif-containing 48	188						intracellular	zinc ion binding				0						ATGCCCCAGCCTCTGAATCTA	0.507													14	9					0	0	0.000308642	0	0
OR4A16	81327	broad.mit.edu	37	11	55111010	55111010	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr11:55111010C>T	uc010rie.1	+	1	334	c.334C>T	c.(334-336)CTT>TTT	p.L112F		NM_001005274	NP_001005274	Q8NH70	O4A16_HUMAN	olfactory receptor, family 4, subfamily A,	112	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(2)|pancreas(1)	3						AGAGGTCTTCCTTTTGGTGGT	0.443													11	62					0	0	6.40141e-05	0	0
TNKS1BP1	85456	broad.mit.edu	37	11	57069397	57069397	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr11:57069397G>A	uc001njr.2	-	8	5167	c.4855C>T	c.(4855-4857)CCA>TCA	p.P1619S	TNKS1BP1_uc001njp.2_Missense_Mutation_p.P191S|TNKS1BP1_uc001njq.2_Missense_Mutation_p.P192S|TNKS1BP1_uc001njs.2_Missense_Mutation_p.P1619S	NM_033396	NP_203754	Q9C0C2	TB182_HUMAN	tankyrase 1-binding protein 1	1619	Arg/Glu/Lys-rich (charged).				nuclear-transcribed mRNA poly(A) tail shortening|telomere maintenance via telomerase	cytoskeleton|cytosol|nuclear telomeric heterochromatin	ankyrin binding|enzyme binding			skin(1)	1		all_epithelial(135;0.21)				TCTGAAGATGGCACCCGAGAT	0.597													9	24					0	0	0.000274275	0	0
ZDHHC5	25921	broad.mit.edu	37	11	57457526	57457526	+	Missense_Mutation	SNP	G	C	C			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr11:57457526G>C	uc001nkx.1	+	5	1664	c.408G>C	c.(406-408)TGG>TGC	p.W136C	ZDHHC5_uc001nky.1_Missense_Mutation_p.W83C|ZDHHC5_uc001nkz.1_5'UTR	NM_015457	NP_056272	Q9C0B5	ZDHC5_HUMAN	zinc finger, DHHC domain containing 5	136	DHHC-type.					integral to membrane	acyltransferase activity|zinc ion binding			skin(1)	1						ACTGCCCCTGGGTGAATAACT	0.448													4	171					0	0	8.12818e-05	0	0
SYT7	9066	broad.mit.edu	37	11	61300491	61300491	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr11:61300491G>A	uc001nrv.2	-	4	327	c.321C>T	c.(319-321)CTC>CTT	p.L107L	SYT7_uc009ynr.2_Silent_p.L182L	NM_004200	NP_004191	O43581	SYT7_HUMAN	synaptotagmin VII	107	Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane	transporter activity			ovary(3)|pancreas(1)	4						GGGAGTTGACGAGGTCTGAGA	0.647													12	63					0	0	0.000219431	0	0
FADS2	9415	broad.mit.edu	37	11	61615704	61615704	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr11:61615704C>T	uc001nsl.1	+	5	842	c.692C>T	c.(691-693)CCC>CTC	p.P231L	FADS2_uc001nsj.2_Missense_Mutation_p.P209L|FADS2_uc010rlo.1_Missense_Mutation_p.P200L|FADS2_uc001nsk.2_Missense_Mutation_p.P231L	NM_004265	NP_004256	O95864	FADS2_HUMAN	fatty acid desaturase 2	231	Cytoplasmic (Potential).				electron transport chain|transport|unsaturated fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to plasma membrane|membrane fraction	heme binding			ovary(1)|pancreas(1)	2					Alpha-Linolenic Acid(DB00132)	CACAAGGATCCCGATGTGAAC	0.567													19	86					0	0	0.000175454	0	0
AHNAK	79026	broad.mit.edu	37	11	62292054	62292054	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr11:62292054G>A	uc001ntl.2	-	5	10135	c.9835C>T	c.(9835-9837)CCA>TCA	p.P3279S	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	3279					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				TTCAGTTTTGGACCTTTTAAT	0.413													49	120					0	0	0.000781405	0	0
SLC22A6	9356	broad.mit.edu	37	11	62748549	62748549	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr11:62748549C>T	uc001nwk.2	-	6	1252	c.945G>A	c.(943-945)AAG>AAA	p.K315K	SLC22A6_uc001nwl.2_Silent_p.K315K|SLC22A6_uc001nwj.2_Silent_p.K315K|SLC22A6_uc001nwm.2_Silent_p.K315K	NM_004790	NP_004781	Q4U2R8	S22A6_HUMAN	solute carrier family 22 member 6 isoform a	315	Cytoplasmic (Potential).				alpha-ketoglutarate transport	basolateral plasma membrane|integral to plasma membrane|membrane fraction	inorganic anion exchanger activity|protein binding				0						TGGTCAGCTCCTTCTGCAGAC	0.652													4	27					0	0	0.00024832	0	0
PLCB3	5331	broad.mit.edu	37	11	64024120	64024120	+	Missense_Mutation	SNP	A	G	G			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr11:64024120A>G	uc001nzb.2	+	10	896	c.896A>G	c.(895-897)TAC>TGC	p.Y299C	PLCB3_uc009ypg.1_Missense_Mutation_p.Y299C|PLCB3_uc009yph.1_Missense_Mutation_p.Y232C|PLCB3_uc009ypi.2_Missense_Mutation_p.Y299C	NM_000932	NP_000923	Q01970	PLCB3_HUMAN	phospholipase C beta 3	299					intracellular signal transduction|lipid catabolic process|synaptic transmission	cytosol	calcium ion binding|calmodulin binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(1)|pancreas(1)	2						TTTAGCCGCTACCTGGGAGGC	0.632													7	23					0	0	0.000274275	0	0
NRXN2	9379	broad.mit.edu	37	11	64453131	64453131	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr11:64453131C>T	uc001oar.2	-	7	1578	c.1139G>A	c.(1138-1140)CGA>CAA	p.R380Q	NRXN2_uc001oas.2_Missense_Mutation_p.R356Q|NRXN2_uc001oaq.2_Missense_Mutation_p.R54Q	NM_015080	NP_055895	P58401	NRX2B_HUMAN	neurexin 2 isoform alpha-1 precursor	186	Extracellular (Potential).|Laminin G-like.				cell adhesion	integral to membrane				upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)|ovary(2)|kidney(1)|pancreas(1)	10						GCGCAGGTTTCGGGTGACCCG	0.607													11	44					0	0	0.000151284	0	0
C11orf85	283129	broad.mit.edu	37	11	64726865	64726865	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr11:64726865G>A	uc001ocb.1	-	2	87	c.13C>T	c.(13-15)CCC>TCC	p.P5S	C11orf85_uc001occ.1_RNA|C11orf85_uc001ocd.1_Missense_Mutation_p.P5S	NM_001037225	NP_001032302	Q3KP22	CK085_HUMAN	hypothetical protein LOC283129	5											0						TAGGTAAAGGGTTTTAAACTC	0.373													25	72					0	0	0.000184323	0	0
MALAT1	378938	broad.mit.edu	37	11	65266456	65266456	+	RNA	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr11:65266456G>A	uc010roh.1	+	1		c.1224G>A				NR_002819				Homo sapiens clone alpha1 mRNA sequence.												0						GAAGGTGATCGAATTCCGGTG	0.498													33	92					0	0	0.000228196	0	0
MALAT1	378938	broad.mit.edu	37	11	65267942	65267942	+	RNA	SNP	T	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr11:65267942T>A	uc010roh.1	+	1		c.2710T>A			uc001ody.2_RNA|MALAT1_uc001odz.2_5'Flank	NR_002819				Homo sapiens clone alpha1 mRNA sequence.												0						CAGTGTTTGATGAAGCTAGGA	0.493													7	68					0	0	0.000274275	0	0
MRPL21	219927	broad.mit.edu	37	11	68668016	68668017	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr11:68668016_68668017CC>AA	uc001ooi.2	-	2	170_171	c.145_146GG>TT	c.(145-147)GGA>TTA	p.G49L	MRPL21_uc001ooh.2_5'UTR|MRPL21_uc010rqe.1_Missense_Mutation_p.G49L	NM_181514	NP_852615	Q7Z2W9	RM21_HUMAN	mitochondrial ribosomal protein L21 isoform d	49					translation	mitochondrion|ribosome	RNA binding|structural constituent of ribosome				0			STAD - Stomach adenocarcinoma(18;0.0208)|LUAD - Lung adenocarcinoma(13;0.0713)			TTGATATTACCCTGGTAGATAT	0.376													12	351					0	0	6.4e-05	0	0
PPFIA1	8500	broad.mit.edu	37	11	70171109	70171109	+	Missense_Mutation	SNP	G	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr11:70171109G>T	uc001opo.2	+	4	721	c.523G>T	c.(523-525)GAT>TAT	p.D175Y	PPFIA1_uc001opn.1_Missense_Mutation_p.D175Y|PPFIA1_uc001opp.2_RNA|PPFIA1_uc001opq.1_5'Flank	NM_003626	NP_003617	Q13136	LIPA1_HUMAN	PTPRF interacting protein alpha 1 isoform b	175					cell-matrix adhesion	cytoplasm	protein binding|signal transducer activity			lung(2)|ovary(1)	3			BRCA - Breast invasive adenocarcinoma(2;1.04e-44)|LUSC - Lung squamous cell carcinoma(11;1.46e-14)|STAD - Stomach adenocarcinoma(18;0.0513)			CAAAGCTCTGGATGAAAAGGT	0.473													21	82					6.12954e-19	7.74881e-18	0.000720815	1	0
PDE2A	5138	broad.mit.edu	37	11	72289356	72289356	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr11:72289356C>T	uc010rrc.1	-	30	2779	c.2536G>A	c.(2536-2538)GAG>AAG	p.E846K	PDE2A_uc001oso.2_Missense_Mutation_p.E825K|PDE2A_uc010rra.1_Missense_Mutation_p.E839K|PDE2A_uc001osn.2_Missense_Mutation_p.E590K|PDE2A_uc010rrb.1_Missense_Mutation_p.E837K|PDE2A_uc010rrd.1_Missense_Mutation_p.E731K	NM_002599	NP_002590	O00408	PDE2A_HUMAN	phosphodiesterase 2A isoform 1	846	Catalytic (By similarity).				platelet activation|signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cGMP binding|cGMP-stimulated cyclic-nucleotide phosphodiesterase activity|metal ion binding			ovary(2)|breast(1)|skin(1)	4			BRCA - Breast invasive adenocarcinoma(5;3.55e-05)		Sildenafil(DB00203)|Sulindac(DB00605)	TCCATCATCTCCATCGGCCTG	0.562													51	210					0	0	0.000781405	0	0
FCHSD2	9873	broad.mit.edu	37	11	72553733	72553734	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr11:72553733_72553734GG>TT	uc009ytl.2	-	17	2079_2080	c.1858_1859CC>AA	c.(1858-1860)CCA>AAA	p.P620K	FCHSD2_uc010rrg.1_Missense_Mutation_p.P484K|FCHSD2_uc001oth.3_Missense_Mutation_p.P564K|ATG16L2_uc009ytj.1_3'UTR	NM_014824	NP_055639	O94868	FCSD2_HUMAN	FCH and double SH3 domains 2	620	SH3 2.						protein binding			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(5;3.3e-05)			TAGCACCGATGGGAAAACTCCA	0.441													16	534					0	0	6.4e-05	0	0
FCHSD2	9873	broad.mit.edu	37	11	72560919	72560920	+	Nonsense_Mutation	DNP	CG	AT	AT			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr11:72560919_72560920CG>AT	uc009ytl.2	-	14	1544_1545	c.1323_1324CG>AT	c.(1321-1326)ACCGAA>ACATAA	p.E442*	FCHSD2_uc010rrg.1_Nonsense_Mutation_p.E306*|FCHSD2_uc001oth.3_Nonsense_Mutation_p.E386*|FCHSD2_uc001oti.2_Nonsense_Mutation_p.E401*	NM_014824	NP_055639	O94868	FCSD2_HUMAN	FCH and double SH3 domains 2	442							protein binding			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(5;3.3e-05)			TCTTCTCTTTCGGTATCTGCAT	0.386													10	506					0	0	6.4e-05	0	0
DGAT2	84649	broad.mit.edu	37	11	75501706	75501706	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr11:75501706G>A	uc001oxa.2	+	4	618	c.359G>A	c.(358-360)GGT>GAT	p.G120D	DGAT2_uc001oxb.2_Missense_Mutation_p.G77D	NM_032564	NP_115953	Q96PD7	DGAT2_HUMAN	diacylglycerol O-acyltransferase 2	120	Cytoplasmic (Potential).				glycerol metabolic process|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane	diacylglycerol O-acyltransferase activity				0	Ovarian(111;0.103)					TCCCTGGAAGGTGGCAGGAGG	0.542													14	93					0	0	0.00074312	0	0
PRKRIR	5612	broad.mit.edu	37	11	76063416	76063417	+	Missense_Mutation	DNP	AG	TA	TA			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr11:76063416_76063417AG>TA	uc001oxh.1	-	5	777_778	c.777_778CT>TA	c.(775-780)TTCTTT>TTTATT	p.F260I	PRKRIR_uc010rrz.1_Missense_Mutation_p.F85I	NM_004705	NP_004696	O43422	P52K_HUMAN	protein-kinase, interferon-inducible double	260					negative regulation of cell proliferation|response to stress|signal transduction		DNA binding|metal ion binding|protein dimerization activity			ovary(2)|pancreas(1)	3						ATAATGGAAAAGAAGTGTGAGT	0.436													15	64					0	0	6.4e-05	0	0
CAPN5	726	broad.mit.edu	37	11	76834853	76834853	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr11:76834853C>T	uc001oxx.2	+	13	2045	c.1860C>T	c.(1858-1860)CCC>CCT	p.P620P	CAPN5_uc009yup.2_Silent_p.P660P|CAPN5_uc009yuq.2_Silent_p.P656P|CAPN5_uc001oxy.2_Silent_p.P660P|CAPN5_uc001oya.2_Silent_p.P182P	NM_004055	NP_004046	O15484	CAN5_HUMAN	calpain 5	620					proteolysis|signal transduction	intracellular	calcium-dependent cysteine-type endopeptidase activity				0						GCCGGCAGCCCAGCAACCTGC	0.617													7	49					0	0	8.12818e-05	0	0
ODZ4	26011	broad.mit.edu	37	11	78443359	78443359	+	Splice_Site	SNP	A	G	G			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr11:78443359A>G	uc001ozl.3	-	21	3601	c.3138_splice	c.e21+1	p.Q1046_splice		NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4						signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						AAAGCTGGGTACCTGAATTTC	0.517													4	50					0	0	0.000602214	0	0
ME3	10873	broad.mit.edu	37	11	86382865	86382865	+	Missense_Mutation	SNP	G	C	C			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr11:86382865G>C	uc001pbz.2	-	1	376	c.122C>G	c.(121-123)GCG>GGG	p.A41G	ME3_uc001pca.2_Missense_Mutation_p.A41G|ME3_uc009yvk.2_Missense_Mutation_p.A41G|ME3_uc010rtr.1_RNA	NM_001014811	NP_001014811	Q16798	MAON_HUMAN	mitochondrial malic enzyme 3 precursor	41					aerobic respiration|malate metabolic process|oxygen metabolic process|pyruvate metabolic process	mitochondrial matrix	malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity|metal ion binding|NAD binding			ovary(1)	1		Acute lymphoblastic leukemia(157;4.34e-06)|all_hematologic(158;0.00252)			NADH(DB00157)	CACAGGGCGCGCCGGGCCAGG	0.726													7	39					0	0	0.000442599	0	0
PRSS23	11098	broad.mit.edu	37	11	86519230	86519230	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr11:86519230C>T	uc001pcb.2	+	2	761	c.545C>T	c.(544-546)ACC>ATC	p.T182I	PRSS23_uc001pcc.1_Intron|PRSS23_uc010rts.1_Missense_Mutation_p.T150I	NM_007173	NP_009104	O95084	PRS23_HUMAN	protease, serine, 23 precursor	182					proteolysis	extracellular region|nucleus	serine-type endopeptidase activity	p.I177fs*17(1)		central_nervous_system(1)|pancreas(1)	2		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)				GATGGAAAAACCTATGTGAAA	0.542													4	35					0	0	0.000602214	0	0
GRM5	2915	broad.mit.edu	37	11	88300835	88300835	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr11:88300835G>A	uc001pcq.2	-	7	2216	c.2016C>T	c.(2014-2016)ATC>ATT	p.I672I	GRM5_uc009yvm.2_Silent_p.I672I	NM_001143831	NP_001137303	P41594	GRM5_HUMAN	glutamate receptor, metabotropic 5 isoform a	672	Cytoplasmic (Potential).				activation of phospholipase C activity by metabotropic glutamate receptor signaling pathway|synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			central_nervous_system(4)|ovary(2)|lung(2)|breast(1)	9		Acute lymphoblastic leukemia(157;2.54e-05)|all_hematologic(158;0.00834)			Acamprosate(DB00659)	TGCCAGCCAGGATCCTTGCAA	0.478													8	33					0	0	0.000157383	0	0
FAT3	120114	broad.mit.edu	37	11	92258115	92258116	+	Splice_Site	DNP	GT	AA	AA			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr11:92258115_92258116GT>AA	uc001pdj.3	+	2	3624	c.3607_splice	c.e2+1	p.G1203_splice		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3						homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				ATCAAAACAGGTAAGGGAATGC	0.347										TCGA Ovarian(4;0.039)			23	109					0	0	6.4e-05	0	0
FAT3	120114	broad.mit.edu	37	11	92577422	92577423	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr11:92577422_92577423CC>AA	uc001pdj.3	+	18	10906_10907	c.10889_10890CC>AA	c.(10888-10890)CCC>CAA	p.P3630Q	FAT3_uc001pdi.3_Missense_Mutation_p.P70Q	NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	3630	Cadherin 33.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				TTCCAGGTACCCATTGATGTGG	0.535										TCGA Ovarian(4;0.039)			12	338					0	0	6.4e-05	0	0
SLC36A4	120103	broad.mit.edu	37	11	92918935	92918936	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr11:92918935_92918936CC>AA	uc001pdn.2	-	2	197_198	c.100_101GG>TT	c.(100-102)GGG>TTG	p.G34L	SLC36A4_uc001pdm.2_5'UTR	NM_152313	NP_689526	Q6YBV0	S36A4_HUMAN	solute carrier family 36 (proton/amino acid	34					L-alanine transport|proline transport|tryptophan transport	integral to membrane	symporter activity			ovary(2)|upper_aerodigestive_tract(1)	3		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.0123)				ATCTGATGTCCCATCAAAATTC	0.351													12	438					0	0	6.4e-05	0	0
CNTN5	53942	broad.mit.edu	37	11	100169974	100169974	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr11:100169974G>A	uc001pga.2	+	20	2805	c.2466G>A	c.(2464-2466)AAG>AAA	p.K822K	CNTN5_uc001pfz.2_Silent_p.K822K|CNTN5_uc001pgb.2_Silent_p.K748K|CNTN5_uc010ruk.1_Silent_p.K93K	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long	822	Fibronectin type-III 2.				cell adhesion	anchored to membrane|plasma membrane	protein binding			skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		GTGGCTGGAAGGAAAAAATGG	0.408													4	6					0	0	0.00024832	0	0
GUCY1A2	2977	broad.mit.edu	37	11	106681104	106681104	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr11:106681104C>T	uc001pjg.1	-	5	1697	c.1307G>A	c.(1306-1308)CGA>CAA	p.R436Q	GUCY1A2_uc010rvo.1_Missense_Mutation_p.R457Q|GUCY1A2_uc009yxn.1_Missense_Mutation_p.R436Q	NM_000855	NP_000846	P33402	GCYA2_HUMAN	guanylate cyclase 1, soluble, alpha 2	436					intracellular signal transduction|platelet activation	cytoplasm	GTP binding|guanylate cyclase activity|heme binding			large_intestine(3)|lung(2)|pancreas(2)|ovary(1)	8		all_epithelial(67;3.66e-05)|Melanoma(852;0.000382)|Acute lymphoblastic leukemia(157;0.001)|all_hematologic(158;0.0017)|Breast(348;0.026)|all_neural(303;0.068)		BRCA - Breast invasive adenocarcinoma(274;8.04e-05)|Epithelial(105;0.0036)|all cancers(92;0.0476)		ATGTAGCCCTCGGCCCATGAG	0.463													9	8					0	0	0.000673444	0	0
TEX12	56158	broad.mit.edu	37	11	112042594	112042594	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr11:112042594C>T	uc001pnc.2	+	5	459	c.327C>T	c.(325-327)TTC>TTT	p.F109F	TEX12_uc001pnd.2_Silent_p.F109F	NM_031275	NP_112565	Q9BXU0	TEX12_HUMAN	testis expressed sequence 12	109											0		all_cancers(61;5.7e-14)|all_epithelial(67;3.4e-08)|Melanoma(852;8.81e-06)|all_hematologic(158;0.000405)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0112)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)		Epithelial(105;1.2e-06)|BRCA - Breast invasive adenocarcinoma(274;1.4e-06)|all cancers(92;1.97e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.0512)		AAAGAGAGTTCCTGCGACAGA	0.323													87	82					0	0	0.000781405	0	0
RNF214	257160	broad.mit.edu	37	11	117150966	117150966	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr11:117150966C>T	uc001pqt.2	+	8	1181	c.1136C>T	c.(1135-1137)ACT>ATT	p.T379I	RNF214_uc001pqu.2_Missense_Mutation_p.T379I|RNF214_uc010rxf.1_Missense_Mutation_p.T224I	NM_207343	NP_997226	Q8ND24	RN214_HUMAN	ring finger protein 214	379	Potential.						zinc ion binding				0	all_hematologic(175;0.0487)	Breast(348;0.00908)|Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;1.88e-05)|Epithelial(105;0.000397)|all cancers(92;0.00258)		TTGCACCTTACTTACCTCAAG	0.368													19	90					0	0	0.000175454	0	0
DSCAML1	57453	broad.mit.edu	37	11	117342587	117342587	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr11:117342587C>T	uc001prh.1	-	15	3132	c.3130G>A	c.(3130-3132)GCC>ACC	p.A1044T		NM_020693	NP_065744	Q8TD84	DSCL1_HUMAN	Down syndrome cell adhesion molecule like 1	984	Extracellular (Potential).				axonogenesis|brain development|cell fate determination|dorsal/ventral pattern formation|embryonic skeletal system morphogenesis|homophilic cell adhesion	cell surface|integral to membrane|plasma membrane	protein homodimerization activity			ovary(3)|large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)	8	all_hematologic(175;0.0487)	Breast(348;0.0424)|Medulloblastoma(222;0.0523)|all_hematologic(192;0.232)		BRCA - Breast invasive adenocarcinoma(274;9.12e-06)|Epithelial(105;0.00172)		TGCTCACCGGCCTCCTCAGTG	0.587													14	79					0	0	0.000958276	0	0
ARHGEF12	23365	broad.mit.edu	37	11	120312852	120312852	+	Missense_Mutation	SNP	T	C	C			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr11:120312852T>C	uc001pxl.1	+	15	1250	c.1243T>C	c.(1243-1245)TCC>CCC	p.S415P	ARHGEF12_uc009zat.2_Missense_Mutation_p.S396P|ARHGEF12_uc010rzn.1_Missense_Mutation_p.S312P|ARHGEF12_uc009zau.1_Missense_Mutation_p.S312P	NM_015313	NP_056128	Q9NZN5	ARHGC_HUMAN	Rho guanine nucleotide exchange factor (GEF) 12	415	RGSL.				apoptosis|axon guidance|G-protein coupled receptor protein signaling pathway|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|membrane	G-protein-coupled receptor binding|GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			lung(2)|breast(2)|skin(2)|ovary(1)	7		Breast(109;0.000813)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.0831)|all_hematologic(192;0.107)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.231)		ACATACCAATTCCAAAGAAAC	0.358			T	MLL	AML								10	25					0	0	0.00010058	0	0
C11orf63	79864	broad.mit.edu	37	11	122775090	122775091	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr11:122775090_122775091CC>AA	uc001pym.2	+	3	1099_1100	c.802_803CC>AA	c.(802-804)CCG>AAG	p.P268K	C11orf63_uc001pyl.1_Missense_Mutation_p.P268K	NM_024806	NP_079082	Q6NUN7	CK063_HUMAN	hypothetical protein LOC79864 isoform 1	268										ovary(3)	3		Breast(109;0.00249)|Lung NSC(97;0.0177)|all_lung(97;0.018)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.34e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0311)		ATTACCCACCCCGAAAACGGAC	0.426													10	200					0	0	6.4e-05	0	0
OR8B4	283162	broad.mit.edu	37	11	124294453	124294453	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr11:124294453G>A	uc010sak.1	-	1	315	c.315C>T	c.(313-315)TTC>TTT	p.F105F		NM_001005196	NP_001005196	Q96RC9	OR8B4_HUMAN	olfactory receptor, family 8, subfamily B,	105	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0279)		AATTGACAAAGAAACAGAAGA	0.433													10	26					0	0	0.000673444	0	0
SLC6A13	6540	broad.mit.edu	37	12	369044	369044	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr12:369044G>A	uc001qic.1	-	2	228	c.175C>T	c.(175-177)CCC>TCC	p.P59S	SLC6A13_uc009zdj.1_Missense_Mutation_p.P59S|SLC6A13_uc010sdl.1_Missense_Mutation_p.P59S|SLC6A13_uc001qid.1_Missense_Mutation_p.P59S	NM_016615	NP_057699	Q9NSD5	S6A13_HUMAN	solute carrier family 6 (neurotransmitter	59	Helical; Name=1; (Potential).				neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity				0	all_cancers(10;0.0416)|all_epithelial(11;0.0537)|all_lung(10;0.0989)|Lung NSC(10;0.139)|Ovarian(42;0.142)		OV - Ovarian serous cystadenocarcinoma(31;0.00153)|BRCA - Breast invasive adenocarcinoma(9;0.239)			CAGAGATAGGGAAACCTCCAG	0.562													53	28					0	0	0.000781405	0	0
TULP3	7289	broad.mit.edu	37	12	3030044	3030044	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr12:3030044C>T	uc010seh.1	+	3	290	c.209C>T	c.(208-210)CCC>CTC	p.P70L	TULP3_uc010sef.1_RNA|TULP3_uc009zec.1_Intron|TULP3_uc010seg.1_RNA|TULP3_uc001qlj.2_Missense_Mutation_p.P70L|TULP3_uc010sei.1_Intron	NM_003324	NP_003315	O75386	TULP3_HUMAN	tubby like protein 3 isoform 1	70					G-protein coupled receptor protein signaling pathway|regulation of transcription, DNA-dependent	cytoplasm|extracellular region|nucleus|plasma membrane	phosphatidylinositol-4,5-bisphosphate binding				0			OV - Ovarian serous cystadenocarcinoma(31;0.000818)			GAGCAGACTCCCTTGGTGAAC	0.493													40	23					0	0	0.000437636	0	0
SLC2A3	6515	broad.mit.edu	37	12	8083865	8083865	+	Silent	SNP	G	A	A	rs150412980		TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr12:8083865G>A	uc001qtr.2	-	4	748	c.486C>T	c.(484-486)ATC>ATT	p.I162I	SLC2A3_uc001qts.2_Silent_p.I162I	NM_006931	NP_008862	P11169	GTR3_HUMAN	solute carrier family 2 (facilitated glucose	162	Helical; Name=5; (Potential).				carbohydrate metabolic process|water-soluble vitamin metabolic process	integral to membrane|plasma membrane	D-glucose transmembrane transporter activity|dehydroascorbic acid transporter activity			ovary(3)|pancreas(1)	4				Kidney(36;0.0866)		TTCCAACAACGATGCCCAGCT	0.438													25	19					0	0	0.000878237	0	0
DDX12	440081	broad.mit.edu	37	12	9573223	9573223	+	Missense_Mutation	SNP	C	A	A	rs4763936	by1000genomes	TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr12:9573223C>A	uc010sgs.1	-	21	2285	c.2090G>T	c.(2089-2091)GGT>GTT	p.G697V	DDX12_uc001qvx.3_5'Flank|DDX12_uc001qvy.1_5'Flank	NM_004400	NP_004391			DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 12												0						AGAAACCACACCGCACAGGTT	0.478													5	16					1.12685e-05	0.00014028	0.000274275	1	0
PRB1	5542	broad.mit.edu	37	12	11506753	11506753	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr12:11506753C>T	uc001qzw.1	-	3	321	c.284G>A	c.(283-285)GGA>GAA	p.G95E	PRB1_uc001qzu.1_Missense_Mutation_p.G95E|PRB1_uc001qzv.1_Missense_Mutation_p.G95E	NM_005039	NP_005030	P04280	PRP1_HUMAN	proline-rich protein BstNI subfamily 1 isoform 1	156	6.|15 X 20 AA approximate tandem repeats of P-P-G-K-P-Q-G-P-P-[PAQ]-Q-[GE]-[GD]- [NKS]-[KSQRN]-[PRQS]-[QS] [GPS]-[PQAR]- [PSR].		Missing (in clone CP-4).|Missing (in clone CP-5).|Missing (in allele S).			extracellular region					0			OV - Ovarian serous cystadenocarcinoma(49;0.185)			TTGTGGTTTTCCTGGAGGAGA	0.607													83	179					0	0	0.000781405	0	0
GRIN2B	2904	broad.mit.edu	37	12	13716751	13716751	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr12:13716751C>T	uc001rbt.2	-	13	3600	c.3421G>A	c.(3421-3423)GAG>AAG	p.E1141K		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	1141	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	GGTGAGTTCTCCTTTGTTCGG	0.612													13	8					0	0	0.000308642	0	0
PIK3C2G	5288	broad.mit.edu	37	12	18691116	18691116	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr12:18691116C>T	uc001rdt.2	+	24	3343	c.3227C>T	c.(3226-3228)TCA>TTA	p.S1076L	PIK3C2G_uc010sia.1_RNA|PIK3C2G_uc010sib.1_Missense_Mutation_p.S1117L|PIK3C2G_uc010sic.1_Missense_Mutation_p.S895L	NM_004570	NP_004561	O75747	P3C2G_HUMAN	phosphoinositide-3-kinase, class 2 gamma	1076	PI3K/PI4K.				cell communication|phosphatidylinositol-mediated signaling	membrane|phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity			lung(8)|central_nervous_system(6)|breast(3)|stomach(2)|ovary(2)	21		Hepatocellular(102;0.194)				ATTTTTACTTCAGAGATGGAA	0.378													6	8					0	0	3.59834e-05	0	0
PLEKHA5	54477	broad.mit.edu	37	12	19418687	19418687	+	Missense_Mutation	SNP	A	G	G			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr12:19418687A>G	uc001reb.2	+	8	700	c.614A>G	c.(613-615)GAG>GGG	p.E205G	PLEKHA5_uc010sie.1_Missense_Mutation_p.E205G|PLEKHA5_uc001rea.2_Missense_Mutation_p.E205G|PLEKHA5_uc009zin.2_5'UTR|PLEKHA5_uc010sif.1_Missense_Mutation_p.E97G|PLEKHA5_uc010sig.1_Missense_Mutation_p.E97G|PLEKHA5_uc010sih.1_Missense_Mutation_p.E97G	NM_019012	NP_061885	Q9HAU0	PKHA5_HUMAN	pleckstrin homology domain containing, family A	205	PH.						1-phosphatidylinositol binding|protein binding			ovary(1)|kidney(1)|skin(1)	3	Acute lymphoblastic leukemia(4;0.000455)|all_hematologic(4;0.00804)					CTCTTAGATGAGAAAGAAGAG	0.318													56	56					0	0	0.000781405	0	0
LST-3TM12	338821	broad.mit.edu	37	12	21172187	21172187	+	Missense_Mutation	SNP	T	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr12:21172187T>A	uc010sin.1	+	2	91	c.91T>A	c.(91-93)TTG>ATG	p.L31M	SLCO1B3_uc010sil.1_Intron|LST-3TM12_uc010sim.1_Intron	NM_001009562	NP_001009562	Q71QF0	Q71QF0_HUMAN	liver-specific organic anion transporter 3TM12	31						membrane	transporter activity				0						TCTAGGAAATTTGTTTGTGAT	0.328													15	11					0	0	0.000422831	0	0
TMTC1	83857	broad.mit.edu	37	12	29667498	29667498	+	Missense_Mutation	SNP	T	C	C			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr12:29667498T>C	uc001rjb.2	-	16	2497	c.2023A>G	c.(2023-2025)AAG>GAG	p.K675E	TMTC1_uc001riz.2_Missense_Mutation_p.K432E|TMTC1_uc001rja.2_Missense_Mutation_p.K519E|TMTC1_uc001riy.2_Missense_Mutation_p.K128E	NM_175861	NP_787057	Q8IUR5	TMTC1_HUMAN	transmembrane and tetratricopeptide repeat	783	TPR 8.					integral to membrane	binding				0	Lung NSC(12;7.61e-10)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.032)					TTTGGGTCCTTTGGTTTCAGC	0.358													7	75					0	0	0.000274275	0	0
C12orf35	55196	broad.mit.edu	37	12	32135922	32135922	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr12:32135922C>T	uc001rks.2	+	4	2447	c.2033C>T	c.(2032-2034)TCC>TTC	p.S678F		NM_018169	NP_060639	Q9HCM1	CL035_HUMAN	hypothetical protein LOC55196	678										ovary(1)|skin(1)	2	all_cancers(9;3.36e-11)|all_epithelial(9;2.56e-11)|all_lung(12;5.67e-10)|Acute lymphoblastic leukemia(23;0.0122)|Lung SC(12;0.0336)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.204)		OV - Ovarian serous cystadenocarcinoma(6;0.0114)			ACCTGTCTTTCCCTGTGGAAA	0.423													23	25					0	0	0.000375601	0	0
SYT10	341359	broad.mit.edu	37	12	33529775	33529775	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr12:33529775G>A	uc001rll.1	-	7	1859	c.1562C>T	c.(1561-1563)TCC>TTC	p.S521F	SYT10_uc009zju.1_Missense_Mutation_p.S331F	NM_198992	NP_945343	Q6XYQ8	SYT10_HUMAN	synaptotagmin X	521	Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(1)|skin(1)	2	Lung NSC(5;8.37e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0334)					TTATGGTGTGGAAGGTGGTTT	0.413													18	104					0	0	0.000229342	0	0
FAM113B	91523	broad.mit.edu	37	12	47629357	47629357	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr12:47629357G>A	uc001rpn.2	+	4	1242	c.511G>A	c.(511-513)GAA>AAA	p.E171K	FAM113B_uc010slj.1_Missense_Mutation_p.E51K|FAM113B_uc001rpq.2_Missense_Mutation_p.E171K	NM_138371	NP_612380	Q96HM7	F113B_HUMAN	hypothetical protein LOC91523	171							hydrolase activity			skin(3)|ovary(2)	5	Renal(347;0.138)|Lung SC(27;0.192)					TGTGGGCGAGGAAGTCACCGG	0.617													14	15					0	0	0.000308642	0	0
KRT71	112802	broad.mit.edu	37	12	52941659	52941659	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr12:52941659G>A	uc001sao.2	-	6	1156	c.1086C>T	c.(1084-1086)ATC>ATT	p.I362I		NM_033448	NP_258259	Q3SY84	K2C71_HUMAN	keratin 71	362	Coil 2.|Rod.						structural molecule activity			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(357;0.194)		TCACGTTCTCGATCTCTGAGC	0.562													23	164					0	0	0.000720815	0	0
KRT74	121391	broad.mit.edu	37	12	52961997	52961997	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr12:52961997C>T	uc001sap.1	-	7	1359	c.1311G>A	c.(1309-1311)ATG>ATA	p.M437I		NM_175053	NP_778223	Q7RTS7	K2C74_HUMAN	keratin 6 irs4	437	Rod.|Coil 2.					keratin filament	structural molecule activity			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(357;0.191)		TGGCAATCTCCATGTCCAGGG	0.642													6	56					0	0	0.000157383	0	0
KRT2	3849	broad.mit.edu	37	12	53040562	53040562	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr12:53040562G>A	uc001sat.2	-	7	1464	c.1431C>T	c.(1429-1431)ATC>ATT	p.I477I		NM_000423	NP_000414	P35908	K22E_HUMAN	keratin 2	477	Coil 2.|Rod.		I -> N (in IBS).		keratinization|keratinocyte activation|keratinocyte migration|keratinocyte proliferation	Golgi apparatus|keratin filament	protein binding|structural constituent of cytoskeleton			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(357;0.19)		GGTAGGTGGCGATCTCCACAT	0.637													31	50					0	0	0.000228196	0	0
ITGA5	3678	broad.mit.edu	37	12	54798495	54798495	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr12:54798495C>T	uc001sga.2	-	13	1477	c.1409G>A	c.(1408-1410)GGA>GAA	p.G470E	ITGA5_uc010sow.1_RNA	NM_002205	NP_002196	P08648	ITA5_HUMAN	integrin alpha 5 precursor	470	Extracellular (Potential).|Potential.|FG-GAP 7.				angiogenesis|axon guidance|blood coagulation|integrin-mediated signaling pathway|interspecies interaction between organisms|leukocyte migration|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of vascular endothelial growth factor receptor signaling pathway|wound healing, spreading of epidermal cells	alphav-beta3 integrin-vitronectin complex|integrin complex|ruffle	platelet-derived growth factor receptor binding|receptor activity|vascular endothelial growth factor receptor 2 binding			ovary(2)	2						ACCAGGATATCCATTGCCATC	0.562											OREG0021554	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	37	52					0	0	0.000589545	0	0
NCKAP1L	3071	broad.mit.edu	37	12	54925079	54925079	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr12:54925079G>A	uc001sgc.3	+	23	2621	c.2542G>A	c.(2542-2544)GGC>AGC	p.G848S	NCKAP1L_uc010sox.1_Missense_Mutation_p.G390S|NCKAP1L_uc010soy.1_Missense_Mutation_p.G798S	NM_005337	NP_005328	P55160	NCKPL_HUMAN	NCK-associated protein 1-like	848					actin polymerization-dependent cell motility|B cell homeostasis|B cell receptor signaling pathway|cortical actin cytoskeleton organization|erythrocyte development|maintenance of cell polarity|myeloid cell homeostasis|negative regulation of apoptosis|negative regulation of interleukin-17 production|negative regulation of interleukin-6 production|negative regulation of myosin-light-chain-phosphatase activity|neutrophil chemotaxis|positive regulation of actin filament polymerization|positive regulation of B cell differentiation|positive regulation of B cell proliferation|positive regulation of CD4-positive, alpha-beta T cell differentiation|positive regulation of CD8-positive, alpha-beta T cell differentiation|positive regulation of cell adhesion mediated by integrin|positive regulation of erythrocyte differentiation|positive regulation of gamma-delta T cell differentiation|positive regulation of neutrophil chemotaxis|positive regulation of phagocytosis, engulfment|positive regulation of T cell proliferation|protein complex assembly|response to drug|T cell homeostasis	cytosol|integral to plasma membrane|membrane fraction|SCAR complex	protein complex binding|protein kinase activator activity|Rac GTPase activator activity			ovary(3)|central_nervous_system(1)	4						GGGCCCCTATGGCATGAAGTT	0.512													26	145					0	0	0.000491102	0	0
PDE1B	5153	broad.mit.edu	37	12	54966436	54966437	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr12:54966436_54966437GG>TT	uc001sgd.1	+	7	812_813	c.646_647GG>TT	c.(646-648)GGG>TTG	p.G216L	PDE1B_uc010soz.1_Missense_Mutation_p.G79L|PDE1B_uc010spa.1_Missense_Mutation_p.G175L|PDE1B_uc001sgf.2_Missense_Mutation_p.G79L|PDE1B_uc001sge.2_Missense_Mutation_p.G196L|PDE1B_uc009znq.2_Missense_Mutation_p.G12L	NM_000924	NP_000915	Q01064	PDE1B_HUMAN	phosphodiesterase 1B isoform 1	216	Catalytic (By similarity).				activation of phospholipase C activity|apoptosis|nerve growth factor receptor signaling pathway|platelet activation	cytosol|nucleus	3',5'-cyclic-AMP phosphodiesterase activity|calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			upper_aerodigestive_tract(1)|ovary(1)	2						GACAGGCTATGGGAAGTACAAG	0.51													12	407					0	0	6.4e-05	0	0
RAB5B	5869	broad.mit.edu	37	12	56383810	56383810	+	Silent	SNP	A	G	G			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr12:56383810A>G	uc001siv.2	+	3	360	c.243A>G	c.(241-243)CGA>CGG	p.R81R	RAB5B_uc001siw.2_Silent_p.R81R|RAB5B_uc009zog.2_Intron|RAB5B_uc010spz.1_Silent_p.R81R	NM_002868	NP_002859	P61020	RAB5B_HUMAN	RAB5B, member RAS oncogene family	81					protein transport|small GTPase mediated signal transduction	early endosome membrane|melanosome|membrane fraction|plasma membrane	GTP binding|GTP-dependent protein binding|GTPase activity				0			UCEC - Uterine corpus endometrioid carcinoma (6;0.0471)|OV - Ovarian serous cystadenocarcinoma(18;0.235)			GGCAGGAGCGATATCACAGCT	0.502													27	38					0	0	0.000586117	0	0
BAZ2A	11176	broad.mit.edu	37	12	56993772	56993772	+	Silent	SNP	G	C	C			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr12:56993772G>C	uc001slq.1	-	25	5201	c.5007C>G	c.(5005-5007)GCC>GCG	p.A1669A	BAZ2A_uc001slp.1_Silent_p.A1667A|BAZ2A_uc001slo.1_Silent_p.A475A|BAZ2A_uc009zov.1_Silent_p.A635A|BAZ2A_uc009zow.1_Silent_p.A1637A	NM_013449	NP_038477	Q9UIF9	BAZ2A_HUMAN	bromodomain adjacent to zinc finger domain, 2A	1669					chromatin silencing at rDNA|DNA methylation|transcription, DNA-dependent	chromatin silencing complex|nucleolus|rDNA heterochromatin	DNA binding|histone acetyl-lysine binding|ligand-dependent nuclear receptor binding|RNA binding|zinc ion binding				0						ACTTCTCCCAGGCAATGGACC	0.652													15	70					0	0	0.00074312	0	0
BAZ2A	11176	broad.mit.edu	37	12	56997418	56997418	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr12:56997418G>A	uc001slq.1	-	17	3305	c.3111C>T	c.(3109-3111)TGC>TGT	p.C1037C	BAZ2A_uc001slp.1_Silent_p.C1035C|BAZ2A_uc001slo.1_5'Flank|BAZ2A_uc009zov.1_Silent_p.C7C|BAZ2A_uc009zow.1_Silent_p.C1005C	NM_013449	NP_038477	Q9UIF9	BAZ2A_HUMAN	bromodomain adjacent to zinc finger domain, 2A	1037					chromatin silencing at rDNA|DNA methylation|transcription, DNA-dependent	chromatin silencing complex|nucleolus|rDNA heterochromatin	DNA binding|histone acetyl-lysine binding|ligand-dependent nuclear receptor binding|RNA binding|zinc ion binding				0						TCCGTCCCAGGCATTCCTCTG	0.532													16	74					0	0	0.00074312	0	0
LRP1	4035	broad.mit.edu	37	12	57588878	57588878	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr12:57588878C>T	uc001snd.2	+	51	8768	c.8302C>T	c.(8302-8304)CAC>TAC	p.H2768Y		NM_002332	NP_002323	Q07954	LRP1_HUMAN	low density lipoprotein-related protein 1	2768	Extracellular (Potential).|LDL-receptor class A 16.				aorta morphogenesis|apoptotic cell clearance|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of Wnt receptor signaling pathway|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			ovary(8)|lung(3)|breast(3)|large_intestine(2)|central_nervous_system(2)|skin(2)|pancreas(2)	22				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	CGAGGCTGCTCACTGTGGTAA	0.632													38	38					0	0	0.000589545	0	0
LRP1	4035	broad.mit.edu	37	12	57590918	57590918	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr12:57590918G>A	uc001snd.2	+	56	9512	c.9046G>A	c.(9046-9048)GGC>AGC	p.G3016S		NM_002332	NP_002323	Q07954	LRP1_HUMAN	low density lipoprotein-related protein 1	3016	Extracellular (Potential).|EGF-like 12; calcium-binding (Potential).				aorta morphogenesis|apoptotic cell clearance|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of Wnt receptor signaling pathway|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			ovary(8)|lung(3)|breast(3)|large_intestine(2)|central_nervous_system(2)|skin(2)|pancreas(2)	22				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	ACCCCGCGGCGGCGACCCCCA	0.642													22	14					0	0	0.000147802	0	0
PTPRR	5801	broad.mit.edu	37	12	71094942	71094942	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr12:71094942G>A	uc001swi.1	-	7	1585	c.1169C>T	c.(1168-1170)TCA>TTA	p.S390L	PTPRR_uc001swh.1_Missense_Mutation_p.S145L|PTPRR_uc009zrs.2_Missense_Mutation_p.S239L|PTPRR_uc010stq.1_Missense_Mutation_p.S278L|PTPRR_uc010str.1_Missense_Mutation_p.S239L	NM_002849	NP_002840	Q15256	PTPRR_HUMAN	protein tyrosine phosphatase, receptor type, R	390	Cytoplasmic (Potential).				in utero embryonic development	cell surface|Golgi apparatus|integral to membrane|nucleus|perinuclear region of cytoplasm|plasma membrane	protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			skin(2)|ovary(1)	3			GBM - Glioblastoma multiforme(2;5.67e-07)|Lung(24;0.00283)|OV - Ovarian serous cystadenocarcinoma(12;0.00578)|LUSC - Lung squamous cell carcinoma(43;0.132)	COAD - Colon adenocarcinoma(1;0.136)		GAGTAAATGTGAACTTGCCAC	0.458													9	17					0	0	0.000151284	0	0
TSPAN8	7103	broad.mit.edu	37	12	71526510	71526510	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr12:71526510G>A	uc009zrt.1	-	6	701	c.539C>T	c.(538-540)CCA>CTA	p.P180L	TSPAN8_uc001swk.1_Missense_Mutation_p.P180L|TSPAN8_uc001swj.1_Missense_Mutation_p.P180L	NM_004616	NP_004607	P19075	TSN8_HUMAN	transmembrane 4 superfamily member 3	180	Extracellular (Potential).				protein glycosylation	integral to membrane|lysosome	signal transducer activity			skin(2)|lung(1)|central_nervous_system(1)	4			LUSC - Lung squamous cell carcinoma(43;0.24)|OV - Ovarian serous cystadenocarcinoma(12;0.244)			GCTTTGGCATGGTCTCTGCTT	0.353													146	175					0	0	0.000781405	0	0
LGR5	8549	broad.mit.edu	37	12	71976316	71976317	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr12:71976316_71976317CC>AA	uc001swl.2	+	17	1681_1682	c.1633_1634CC>AA	c.(1633-1635)CCA>AAA	p.P545K	LGR5_uc001swm.2_Missense_Mutation_p.P521K|LGR5_uc001swn.1_RNA	NM_003667	NP_003658	O75473	LGR5_HUMAN	leucine-rich repeat-containing G protein-coupled	545	Extracellular (Potential).					integral to plasma membrane	protein-hormone receptor activity			lung(4)|skin(3)|ovary(1)|pancreas(1)	9						TTCACCTTCCCCAGGTGAGAAA	0.45													11	263					0	0	6.4e-05	0	0
Unknown	0	broad.mit.edu	37	12	80765802	80765802	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr12:80765802G>A	uc009zsg.1	+	11	953	c.352G>A	c.(352-354)GAA>AAA	p.E118K	uc001szd.2_Missense_Mutation_p.E257K					RecName: Full=Uncharacterized protein C12orf64;																		TTTCTAGAATGAAGGGATTGT	0.308													10	43					0	0	0.000673444	0	0
ATP2B1	490	broad.mit.edu	37	12	90024357	90024357	+	Missense_Mutation	SNP	C	G	G			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr12:90024357C>G	uc001tbh.2	-	5	1034	c.853G>C	c.(853-855)GGA>CGA	p.G285R	ATP2B1_uc001tbg.2_Missense_Mutation_p.G285R	NM_001682	NP_001673	P20020	AT2B1_HUMAN	plasma membrane calcium ATPase 1 isoform 1b	285	Cytoplasmic (Potential).				ATP biosynthetic process|platelet activation	integral to plasma membrane	ATP binding|calcium-transporting ATPase activity|calmodulin binding|metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3						AAGATAATTCCAGTTTGAGAA	0.239													10	59					0	0	6.40141e-05	0	0
DCN	1634	broad.mit.edu	37	12	91545434	91545434	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr12:91545434G>A	uc001tbs.2	-	6	976	c.882C>T	c.(880-882)ATC>ATT	p.I294I	DCN_uc001tbo.2_Silent_p.I185I|DCN_uc001tbp.2_Silent_p.I147I|DCN_uc001tbq.2_Intron|DCN_uc001tbr.2_Intron|DCN_uc001tbt.2_Silent_p.I294I|DCN_uc001tbu.2_Silent_p.I294I	NM_133503	NP_598010	P07585	PGS2_HUMAN	decorin isoform a preproprotein	294	LRR 10.				organ morphogenesis	extracellular space				central_nervous_system(2)|ovary(1)|lung(1)	4						GCATTACCTGGATGTACTTAT	0.502													20	30					0	0	0.000229342	0	0
PLEKHG7	440107	broad.mit.edu	37	12	93157888	93157889	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr12:93157888_93157889GG>TT	uc001tcj.2	+	10	1082_1083	c.852_853GG>TT	c.(850-855)GAGGGT>GATTGT	p.284_285EG>DC		NM_001004330	NP_001004330	Q6ZR37	PKHG7_HUMAN	pleckstrin homology domain containing, family G	284_285	PH.				regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			ovary(1)	1						TAATAAAAGAGGGTGGTTCGTG	0.386													9	120					0	0	6.4e-05	0	0
AMDHD1	144193	broad.mit.edu	37	12	96354372	96354372	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr12:96354372G>A	uc001tel.1	+	5	890	c.784G>A	c.(784-786)GAT>AAT	p.D262N	AMDHD1_uc009zth.1_Missense_Mutation_p.D153N	NM_152435	NP_689648	Q96NU7	HUTI_HUMAN	amidohydrolase domain containing 1	262					histidine catabolic process to glutamate and formamide	cytosol	imidazolonepropionase activity|metal ion binding			central_nervous_system(1)	1						CTTCCATGGGGATGAACTCCA	0.408													44	89					0	0	0.000781405	0	0
DEPDC4	120863	broad.mit.edu	37	12	100660858	100660858	+	Splice_Site	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr12:100660858C>T	uc001thi.2	-	1	1	c.-2_splice	c.e1-1		SCYL2_uc009ztw.1_5'Flank|SCYL2_uc001thm.1_5'Flank|SCYL2_uc001thn.2_5'Flank|DEPDC4_uc001thh.1_Splice_Site|DEPDC4_uc001thj.1_Splice_Site|DEPDC4_uc009ztv.1_Splice_Site|DEPDC4_uc001thk.1_Splice_Site|DEPDC4_uc001thl.1_Splice_Site	NM_152317	NP_689530	Q8N2C3	DEPD4_HUMAN	DEP domain containing 4						intracellular signal transduction						0						GCACCATAGCCCCGCCCCACC	0.642													9	26					0	0	0.000442599	0	0
ANO4	121601	broad.mit.edu	37	12	101480503	101480503	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr12:101480503C>T	uc010svm.1	+	17	2174	c.1602C>T	c.(1600-1602)TTC>TTT	p.F534F	ANO4_uc001thw.2_Silent_p.F499F|ANO4_uc001thx.2_Silent_p.F534F|ANO4_uc001thy.2_Silent_p.F54F	NM_178826	NP_849148	Q32M45	ANO4_HUMAN	anoctamin 4	534	Cytoplasmic (Potential).					chloride channel complex	chloride channel activity			ovary(4)|skin(2)	6						TCAGCACTTTCGCTGCCTTTA	0.507										HNSCC(74;0.22)			14	54					0	0	0.00074312	0	0
TMEM119	338773	broad.mit.edu	37	12	108985573	108985573	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr12:108985573C>T	uc001tng.2	-	2	750	c.587G>A	c.(586-588)GGA>GAA	p.G196E	TMEM119_uc001tnf.2_RNA	NM_181724	NP_859075	Q4V9L6	TM119_HUMAN	transmembrane protein 119 precursor	196	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1						CATCCTGGCTCCGTCCCCACC	0.677													16	13					0	0	0.000566183	0	0
RNFT2	84900	broad.mit.edu	37	12	117271725	117271725	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr12:117271725C>T	uc009zwn.2	+	8	1244	c.1011C>T	c.(1009-1011)ATC>ATT	p.I337I	RNFT2_uc001twb.3_Silent_p.I337I|RNFT2_uc001twa.3_Silent_p.I247I|RNFT2_uc001twc.3_Silent_p.I85I	NM_001109903	NP_001103373	Q96EX2	RNFT2_HUMAN	transmembrane protein 118 isoform 1	337	Helical; (Potential).					integral to membrane	zinc ion binding				0	all_neural(191;0.117)|Medulloblastoma(191;0.163)			BRCA - Breast invasive adenocarcinoma(302;0.034)		GGGTCCTGATCGTTCTCTACA	0.607													8	11					0	0	0.000274275	0	0
NOS1	4842	broad.mit.edu	37	12	117696212	117696212	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr12:117696212C>T	uc001twm.1	-	16	3207	c.2521G>A	c.(2521-2523)GAA>AAA	p.E841K	NOS1_uc001twn.1_Missense_Mutation_p.E11K	NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	841	Flavodoxin-like.				multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	TTCCTTTCTTCCTGCACAGAG	0.483													20	29					0	0	0.000375601	0	0
VSIG10	54621	broad.mit.edu	37	12	118511792	118511792	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr12:118511792G>A	uc001tws.2	-	5	1265	c.931C>T	c.(931-933)CCC>TCC	p.P311S		NM_019086	NP_061959	Q8N0Z9	VSI10_HUMAN	V-set and immunoglobulin domain containing 10	311	Ig-like C2-type 4.|Extracellular (Potential).					integral to membrane					0						AGAAGGGAGGGACCCCCTGGT	0.483													17	11					0	0	0.000229342	0	0
ANAPC5	51433	broad.mit.edu	37	12	121756129	121756130	+	Missense_Mutation	DNP	CG	AT	AT	rs112808731		TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr12:121756129_121756130CG>AT	uc001uag.2	-	15	1965_1966	c.1843_1844CG>AT	c.(1843-1845)CGG>ATG	p.R615M	ANAPC5_uc010szu.1_Missense_Mutation_p.R281M|ANAPC5_uc001uae.2_Missense_Mutation_p.R179M|ANAPC5_uc010szv.1_Missense_Mutation_p.R217M|ANAPC5_uc001uaf.2_RNA|ANAPC5_uc001uah.2_Missense_Mutation_p.R503M|ANAPC5_uc001uai.1_Missense_Mutation_p.G193C	NM_016237	NP_057321	Q9UJX4	APC5_HUMAN	anaphase-promoting complex subunit 5 isoform a	615					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|G2/M transition of mitotic cell cycle|mitotic anaphase|mitotic cell cycle spindle assembly checkpoint|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination	anaphase-promoting complex|cytosol|nucleoplasm	protein phosphatase binding|ubiquitin-protein ligase activity			skin(3)|breast(2)|kidney(1)	6	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					GTACTGTAACCGGTACTCCTTG	0.54													13	405					0	0	6.4e-05	0	0
PITPNM2	57605	broad.mit.edu	37	12	123497242	123497242	+	Silent	SNP	A	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr12:123497242A>T	uc001uej.1	-	4	472	c.333T>A	c.(331-333)ATT>ATA	p.I111I	PITPNM2_uc001uek.1_Silent_p.I111I|PITPNM2_uc009zxu.1_Silent_p.I111I|hsa-mir-4304|MI0015832_5'Flank	NM_020845	NP_065896	Q9BZ72	PITM2_HUMAN	phosphatidylinositol transfer protein,	111					metabolic process|transport	endomembrane system|integral to membrane|intracellular membrane-bounded organelle	calcium ion binding|lipid binding			ovary(1)|central_nervous_system(1)|skin(1)	3	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.55e-05)|Epithelial(86;8.43e-05)|BRCA - Breast invasive adenocarcinoma(302;0.123)		AAAAGGTTTCAATGTCGATGG	0.502													73	59					0	0	0.000781405	0	0
ATP6V0A2	23545	broad.mit.edu	37	12	124233328	124233328	+	Missense_Mutation	SNP	G	C	C			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr12:124233328G>C	uc001ufr.2	+	15	2179	c.1931G>C	c.(1930-1932)GGG>GCG	p.G644A		NM_012463	NP_036595	Q9Y487	VPP2_HUMAN	ATPase, H+ transporting, lysosomal V0 subunit	644	Lumenal (Potential).				ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|immune response|insulin receptor signaling pathway|transferrin transport	endosome membrane|integral to membrane|plasma membrane|proton-transporting two-sector ATPase complex, proton-transporting domain	hydrogen ion transmembrane transporter activity|protein binding			ovary(2)	2	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000224)|Epithelial(86;0.000625)|all cancers(50;0.00775)		CTTTACACAGGGCAGGTGAGT	0.433													3	47					0	0	0.000602214	0	0
ANKLE2	23141	broad.mit.edu	37	12	133324813	133324813	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr12:133324813C>T	uc001ukx.2	-	4	1019	c.952G>A	c.(952-954)GAG>AAG	p.E318K	ANKLE2_uc001uky.3_Missense_Mutation_p.E256K	NM_015114	NP_055929	Q86XL3	ANKL2_HUMAN	ankyrin repeat and LEM domain containing 2	318						cytoplasm|integral to membrane|nuclear envelope					0	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0176)|Lung NSC(355;0.204)		OV - Ovarian serous cystadenocarcinoma(86;2.3e-08)|Epithelial(86;1.56e-07)|all cancers(50;4.94e-06)		TCTCCCTTCTCCACAGCTTTC	0.532													24	14					0	0	0.00047179	0	0
ATP12A	479	broad.mit.edu	37	13	25265365	25265365	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr13:25265365G>A	uc001upp.2	+	8	1232	c.1045G>A	c.(1045-1047)GAG>AAG	p.E349K	ATP12A_uc010aaa.2_Missense_Mutation_p.E355K	NM_001676	NP_001667	P54707	AT12A_HUMAN	hydrogen/potassium-exchanging ATPase 12A	349	Helical; (Potential).				ATP biosynthetic process	hydrogen:potassium-exchanging ATPase complex	ATP binding|hydrogen:potassium-exchanging ATPase activity|metal ion binding			ovary(2)|central_nervous_system(2)|large_intestine(1)|breast(1)	6		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0307)|Epithelial(112;0.086)|OV - Ovarian serous cystadenocarcinoma(117;0.228)	Esomeprazole(DB00736)|Pantoprazole(DB00213)	CAATGTGCCCGAGGGCCTCCT	0.567													7	17					0	0	0.000673444	0	0
C13orf36	400120	broad.mit.edu	37	13	37269376	37269376	+	Missense_Mutation	SNP	T	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr13:37269376T>A	uc001uvt.3	+	2	607	c.161T>A	c.(160-162)TTT>TAT	p.F54Y		NM_203451	NP_982276	A2A2V5	CM036_HUMAN	hypothetical protein LOC400120	54	Helical; (Potential).					integral to membrane				skin(1)	1						CTTTTAGCGTTTCTGCTTCTG	0.493													17	67					0	0	0.000375601	0	0
KIAA0564	23078	broad.mit.edu	37	13	42273273	42273273	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr13:42273273G>A	uc001uyj.2	-	29	3568	c.3498C>T	c.(3496-3498)CAC>CAT	p.H1166H		NM_015058	NP_055873	A3KMH1	K0564_HUMAN	hypothetical protein LOC23078 isoform a	1166						extracellular region	ATP binding|ATPase activity			ovary(3)|upper_aerodigestive_tract(1)|kidney(1)|skin(1)	6		Lung NSC(96;4.61e-06)|Prostate(109;0.0167)|Lung SC(185;0.0262)|Breast(139;0.0854)|Hepatocellular(98;0.114)		OV - Ovarian serous cystadenocarcinoma(117;0.000368)|GBM - Glioblastoma multiforme(144;0.0033)|BRCA - Breast invasive adenocarcinoma(63;0.0969)		TCACAAAAGGGTGCCAAACGC	0.473													7	48					0	0	8.12818e-05	0	0
AKAP11	11215	broad.mit.edu	37	13	42877183	42877183	+	Missense_Mutation	SNP	T	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr13:42877183T>A	uc001uys.1	+	8	4476	c.4301T>A	c.(4300-4302)TTT>TAT	p.F1434Y		NM_016248	NP_057332	Q9UKA4	AKA11_HUMAN	A-kinase anchor protein 11	1434					intracellular protein kinase cascade	microtubule organizing center	protein kinase A binding|protein phosphatase 1 binding			ovary(1)|central_nervous_system(1)	2		Lung NSC(96;1.86e-05)|Prostate(109;0.0165)|Lung SC(185;0.0262)|Breast(139;0.0707)|Hepatocellular(98;0.114)		OV - Ovarian serous cystadenocarcinoma(117;0.000365)|GBM - Glioblastoma multiforme(144;0.00116)|BRCA - Breast invasive adenocarcinoma(63;0.19)		GAAGGTTACTTTTGTAAAAAT	0.353													8	24					0	0	0.000673444	0	0
CYSLTR2	57105	broad.mit.edu	37	13	49281176	49281176	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr13:49281176G>A	uc010acx.1	+	6	906	c.223G>A	c.(223-225)GTT>ATT	p.V75I	CYSLTR2_uc010acy.1_Missense_Mutation_p.V75I|CYSLTR2_uc010acz.1_Missense_Mutation_p.V75I|CYSLTR2_uc010ada.1_Missense_Mutation_p.V75I|CYSLTR2_uc010adb.1_Missense_Mutation_p.V75I|CYSLTR2_uc010adc.1_Missense_Mutation_p.V75I|CYSLTR2_uc010add.1_Missense_Mutation_p.V75I|CYSLTR2_uc010acw.1_Missense_Mutation_p.V75I|CYSLTR2_uc001vck.2_Missense_Mutation_p.V75I	NM_020377	NP_065110	Q9NS75	CLTR2_HUMAN	cysteinyl leukotriene receptor 2	75	Helical; Name=2; (Potential).				immune response	integral to membrane|plasma membrane				lung(2)	2		all_cancers(8;1.66e-53)|all_epithelial(8;1.96e-19)|all_lung(13;9.94e-09)|all_hematologic(8;7.13e-07)|Lung NSC(96;1.72e-06)|Breast(56;1.53e-05)|Acute lymphoblastic leukemia(8;6.86e-05)|Prostate(109;0.00174)|Myeloproliferative disorder(33;0.0179)|Hepatocellular(98;0.0207)|all_neural(104;0.0416)|Lung SC(185;0.0787)		GBM - Glioblastoma multiforme(99;1.19e-09)	Nedocromil(DB00716)	ATCTGTGAACGTTTTCATGCT	0.408													10	29					0	0	0.00010058	0	0
KLHL1	57626	broad.mit.edu	37	13	70314608	70314608	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr13:70314608C>T	uc001vip.2	-	8	2514	c.1720G>A	c.(1720-1722)GAT>AAT	p.D574N	KLHL1_uc010thm.1_Missense_Mutation_p.D513N	NM_020866	NP_065917	Q9NR64	KLHL1_HUMAN	kelch-like 1 protein	574	Kelch 3.				actin cytoskeleton organization	cytoplasm|cytoskeleton	actin binding				0		Breast(118;0.000162)		COAD - Colon adenocarcinoma(199;0.000193)|GBM - Glioblastoma multiforme(99;0.000211)		CTCTGTGGATCCCACCTTTCC	0.413													6	27					0	0	3.59834e-05	0	0
DACH1	1602	broad.mit.edu	37	13	72131253	72131253	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr13:72131253C>T	uc010thn.1	-	7	1896	c.1473G>A	c.(1471-1473)CTG>CTA	p.L491L	DACH1_uc010tho.1_Intron|DACH1_uc010thp.1_Intron	NM_080759	NP_542937	Q9UI36	DACH1_HUMAN	dachshund homolog 1 isoform a	543					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus	DNA binding|nucleotide binding|protein binding			breast(1)	1		Acute lymphoblastic leukemia(28;0.0503)|Breast(118;0.198)		GBM - Glioblastoma multiforme(99;0.00032)		ATAAGCCCATCAGCATCTGGT	0.428													7	25					0	0	0.000157383	0	0
FARP1	10160	broad.mit.edu	37	13	99063075	99063075	+	Missense_Mutation	SNP	T	C	C			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr13:99063075T>C	uc001vnj.2	+	15	2026	c.1690T>C	c.(1690-1692)TCG>CCG	p.S564P	FARP1_uc001vnh.2_Missense_Mutation_p.S564P	NM_005766	NP_005757	Q9Y4F1	FARP1_HUMAN	FERM, RhoGEF, and pleckstrin domain protein 1	564	DH.				regulation of Rho protein signal transduction	cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding|Rho guanyl-nucleotide exchange factor activity			breast(2)	2	all_neural(89;0.0982)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)		BRCA - Breast invasive adenocarcinoma(86;0.233)			AGTTATCACTTCGGTATGTGC	0.423													3	19					0	0	6.4e-05	0	0
MYO16	23026	broad.mit.edu	37	13	109475492	109475492	+	Missense_Mutation	SNP	T	G	G			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr13:109475492T>G	uc001vqt.1	+	9	1023	c.897T>G	c.(895-897)TTT>TTG	p.F299L	MYO16_uc010agk.1_Missense_Mutation_p.F321L|MYO16_uc001vqu.1_Missense_Mutation_p.F99L	NM_015011	NP_055826	Q9Y6X6	MYO16_HUMAN	myosin heavy chain Myr 8	299					cerebellum development|negative regulation of cell proliferation|negative regulation of S phase of mitotic cell cycle	myosin complex|nucleoplasm|perinuclear region of cytoplasm|plasma membrane	actin filament binding|ATP binding|motor activity			ovary(6)|large_intestine(1)|kidney(1)|breast(1)|central_nervous_system(1)	10	all_lung(23;0.000332)|all_neural(89;0.00294)|Medulloblastoma(90;0.00596)|Lung NSC(43;0.00751)|Lung SC(71;0.104)		BRCA - Breast invasive adenocarcinoma(86;0.19)|all cancers(43;0.201)			CCTCTGAGTTTATTGAGGAAA	0.358													7	32					0	0	0.000157383	0	0
COL4A1	1282	broad.mit.edu	37	13	110847425	110847425	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr13:110847425C>T	uc001vqw.3	-	22	1448	c.1326G>A	c.(1324-1326)CAG>CAA	p.Q442Q	COL4A1_uc010agl.2_Intron	NM_001845	NP_001836	P02462	CO4A1_HUMAN	alpha 1 type IV collagen preproprotein	442	Triple-helical region.				angiogenesis|axon guidance		extracellular matrix structural constituent|platelet-derived growth factor binding			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6	all_cancers(4;9.8e-13)|all_epithelial(4;9.66e-08)|all_lung(23;3.75e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00178)|all_neural(89;0.00459)|Medulloblastoma(90;0.00596)|Lung SC(71;0.0604)	Breast(118;0.2)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.145)			CAGGAGGACCCTGGTCACCTG	0.433													14	80					0	0	0.00074312	0	0
F7	2155	broad.mit.edu	37	13	113771173	113771173	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr13:113771173G>A	uc001vsv.2	+	7	716	c.665G>A	c.(664-666)GGG>GAG	p.G222E	F7_uc010agp.1_Missense_Mutation_p.G215E|F7_uc001vsw.2_Missense_Mutation_p.G200E|F7_uc010tjt.1_Missense_Mutation_p.G153E	NM_000131	NP_000122	P08709	FA7_HUMAN	coagulation factor VII isoform a precursor	222	Peptidase S1.				anti-apoptosis|blood coagulation, extrinsic pathway|peptidyl-glutamic acid carboxylation|positive regulation of leukocyte chemotaxis|positive regulation of platelet-derived growth factor receptor signaling pathway|positive regulation of positive chemotaxis|positive regulation of protein kinase B signaling cascade|post-translational protein modification|proteolysis	endoplasmic reticulum lumen|Golgi lumen|plasma membrane	calcium ion binding|glycoprotein binding|serine-type endopeptidase activity				0	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)	all_cancers(25;0.118)|all_lung(25;0.0364)|all_epithelial(44;0.0393)|Lung NSC(25;0.128)|Breast(118;0.188)	all cancers(43;0.0737)|Epithelial(84;0.213)|BRCA - Breast invasive adenocarcinoma(86;0.218)		Coagulation Factor IX(DB00100)|Coagulation factor VIIa(DB00036)|Menadione(DB00170)	TGCCCCAAAGGGGAGTGTCCA	0.488													12	44					0	0	0.000151284	0	0
LAMP1	3916	broad.mit.edu	37	13	113960916	113960916	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr13:113960916C>T	uc001vtm.1	+	2	459	c.178C>T	c.(178-180)CCT>TCT	p.P60S	LAMP1_uc010tka.1_Missense_Mutation_p.P60S	NM_005561	NP_005552	P11279	LAMP1_HUMAN	lysosomal-associated membrane protein 1	60	Lumenal (Potential).|First lumenal domain.					endosome membrane|integral to plasma membrane|lysosomal membrane|membrane fraction				central_nervous_system(2)	2	Lung NSC(43;0.0161)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.0482)|all_epithelial(44;0.0148)|all_lung(25;0.0271)|Lung NSC(25;0.0977)|Breast(118;0.188)	all cancers(43;0.025)|GBM - Glioblastoma multiforme(44;0.206)|Epithelial(84;0.246)			CAAGAGTGGCCCTAAGGTAGG	0.468													6	31					0	0	8.12818e-05	0	0
OR4Q3	441669	broad.mit.edu	37	14	20215761	20215761	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr14:20215761C>T	uc010tkt.1	+	1	175	c.175C>T	c.(175-177)CCT>TCT	p.P59S		NM_172194	NP_751944	Q8NH05	OR4Q3_HUMAN	olfactory receptor, family 4, subfamily Q,	59	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(3)	3	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		GCTCCAATCTCCTATGTATTA	0.408													7	21					0	0	0.000673444	0	0
OR4K2	390431	broad.mit.edu	37	14	20344937	20344937	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr14:20344937C>T	uc001vwh.1	+	1	511	c.511C>T	c.(511-513)CCC>TCC	p.P171S		NM_001005501	NP_001005501	Q8NGD2	OR4K2_HUMAN	olfactory receptor, family 4, subfamily K,	171	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		ATTCTGTGGTCCCTATGAGGT	0.478													76	195					0	0	0.000781405	0	0
OR11H4	390442	broad.mit.edu	37	14	20711839	20711839	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr14:20711839C>T	uc010tld.1	+	1	889	c.889C>T	c.(889-891)CCT>TCT	p.P297S		NM_001004479	NP_001004479	Q8NGC9	O11H4_HUMAN	olfactory receptor, family 11, subfamily H,	297	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_cancers(95;0.000888)		Epithelial(56;1.75e-06)|all cancers(55;1.22e-05)	GBM - Glioblastoma multiforme(265;0.0146)		TCTTTTTAATCCTCTGATCTA	0.398													19	72					0	0	0.000132079	0	0
CEBPE	1053	broad.mit.edu	37	14	23587820	23587820	+	Missense_Mutation	SNP	C	G	G			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr14:23587820C>G	uc001wiv.1	-	1	655	c.481G>C	c.(481-483)GCA>CCA	p.A161P		NM_001805	NP_001796	Q15744	CEBPE_HUMAN	CCAAT/enhancer binding protein epsilon	161						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2	all_cancers(95;4.6e-05)			GBM - Glioblastoma multiforme(265;0.0064)		TGGCCGGGTGCTGCCAGAGTT	0.672													3	18					0	0	0.00024832	0	0
NGDN	25983	broad.mit.edu	37	14	23946554	23946554	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr14:23946554C>T	uc001wjy.2	+	9	886	c.859C>T	c.(859-861)CAT>TAT	p.H287Y	NGDN_uc001wjz.2_Missense_Mutation_p.H287Y|NGDN_uc001wka.2_RNA	NM_001042635	NP_001036100	Q8NEJ9	NGDN_HUMAN	neuroguidin isoform 1	287					regulation of translation	axon|cytoplasm|dendrite|filopodium|nucleus					0	all_cancers(95;0.000251)			GBM - Glioblastoma multiforme(265;0.00654)		GGGAACTGTTCATCTTGATGA	0.448													46	99					0	0	0.000781405	0	0
AP1G2	8906	broad.mit.edu	37	14	24035370	24035370	+	Splice_Site	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr14:24035370C>T	uc001wkl.2	-	5	809	c.472_splice	c.e5-1	p.A158_splice	AP1G2_uc001wkj.2_Splice_Site|AP1G2_uc001wkk.3_Splice_Site_p.A29_splice|AP1G2_uc001wkn.2_Splice_Site|uc001wko.1_RNA|AP1G2_uc001wkp.1_5'Flank|AP1G2_uc010tnp.1_Splice_Site_p.A158_splice|AP1G2_uc010aks.2_Splice_Site_p.A29_splice|AP1G2_uc010akt.2_Splice_Site_p.A29_splice|AP1G2_uc010tnq.1_Splice_Site	NM_003917	NP_003908	O75843	AP1G2_HUMAN	adaptor-related protein complex 1, gamma 2						interspecies interaction between organisms|intracellular protein transport|vesicle-mediated transport	AP-1 adaptor complex|endosome membrane	protein binding|protein transporter activity			ovary(1)	1	all_cancers(95;0.000251)			GBM - Glioblastoma multiforme(265;0.00672)		TCAGAATAGCCTGCAGAGGTC	0.577													4	27					0	0	0.000602214	0	0
DHRS2	10202	broad.mit.edu	37	14	24114495	24114495	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr14:24114495C>T	uc001wkt.3	+	9	1334	c.887C>T	c.(886-888)CCA>CTA	p.P296L	DHRS2_uc001wku.3_3'UTR|DHRS2_uc010akv.2_RNA|DHRS2_uc001wkv.3_3'UTR	NM_182908	NP_878912	Q13268	DHRS2_HUMAN	dehydrogenase/reductase member 2 isoform 1	Error:Variant_position_missing_in_Q13268_after_alignment					C21-steroid hormone metabolic process|cellular response to oxidative stress|myeloid dendritic cell differentiation|negative regulation of apoptosis|negative regulation of cell proliferation|response to toxin	mitochondrion|nuclear envelope	binding|carbonyl reductase (NADPH) activity			large_intestine(1)|ovary(1)	2				GBM - Glioblastoma multiforme(265;0.00659)		GCTGTGGTCCCAGGCCCAGGA	0.597													31	45					0	0	0.000491102	0	0
CBLN3	643866	broad.mit.edu	37	14	24898030	24898030	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr14:24898030G>A	uc001wpg.3	-	1	702	c.231C>T	c.(229-231)GTC>GTT	p.V77V	KHNYN_uc010tpc.1_5'Flank|KHNYN_uc001wph.3_5'Flank|KHNYN_uc010alw.2_5'Flank	NM_001039771	NP_001034860	Q6UW01	CBLN3_HUMAN	cerebellin 3 precursor	77	Necessary for interaction with CBLN3, and homotrimerization (By similarity).|C1q.					cell junction|extracellular region|synapse				central_nervous_system(1)	1				GBM - Glioblastoma multiforme(265;0.00159)		GGTGGCTTCGGACCGCAGCAA	0.677													4	15					0	0	0.00024832	0	0
MBIP	51562	broad.mit.edu	37	14	36768352	36768352	+	Silent	SNP	G	C	C			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr14:36768352G>C	uc001wtm.2	-	9	1060	c.972C>G	c.(970-972)CTC>CTG	p.L324L	MBIP_uc001wto.2_Silent_p.L323L|MBIP_uc010tpy.1_Silent_p.L183L|MBIP_uc001wtn.2_3'UTR	NM_016586	NP_057670	Q9NS73	MBIP1_HUMAN	MAP3K12 binding inhibitory protein 1 isoform 1	324	Interaction with MAP3K12.|Leucine-zipper 2 (Potential).				histone H3 acetylation|inactivation of MAPK activity involved in osmosensory signaling pathway	Ada2/Gcn5/Ada3 transcription activator complex|cytoplasm|nucleolus	identical protein binding|protein kinase inhibitor activity				0	all_cancers(3;1.55e-52)|all_epithelial(1;2.69e-62)|Breast(36;0.0505)|Hepatocellular(127;0.158)|Esophageal squamous(585;0.164)		Lung(8;1.28e-07)|LUAD - Lung adenocarcinoma(9;3e-07)|Epithelial(34;0.0303)|all cancers(34;0.0781)	GBM - Glioblastoma multiforme(112;0.0191)		GGGCTTGTTTGAGGGCACTAA	0.388													4	146					0	0	3.59834e-05	0	0
SOS2	6655	broad.mit.edu	37	14	50649239	50649239	+	Missense_Mutation	SNP	A	C	C			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr14:50649239A>C	uc001wxs.3	-	6	898	c.800T>G	c.(799-801)ATG>AGG	p.M267R	SOS2_uc010tql.1_Missense_Mutation_p.M267R|SOS2_uc001wxt.2_5'Flank	NM_006939	NP_008870	Q07890	SOS2_HUMAN	son of sevenless homolog 2	267	DH.				apoptosis|axon guidance|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	DNA binding|protein binding|Rho guanyl-nucleotide exchange factor activity			ovary(2)	2	all_epithelial(31;0.000822)|Breast(41;0.0065)					TTCATCAGTCATTTCAACTGT	0.333													28	53					0	0	0.000491102	0	0
ERO1L	30001	broad.mit.edu	37	14	53112975	53112975	+	Silent	SNP	A	G	G			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr14:53112975A>G	uc001wzv.2	-	15	1469	c.1243T>C	c.(1243-1245)TTA>CTA	p.L415L	ERO1L_uc001wzw.2_RNA|ERO1L_uc010aof.2_Intron	NM_014584	NP_055399	Q96HE7	ERO1A_HUMAN	ERO1-like precursor	415					chaperone mediated protein folding requiring cofactor|electron transport chain|protein thiol-disulfide exchange|response to temperature stimulus|transport	endoplasmic reticulum lumen|endoplasmic reticulum membrane|microsome	disulfide oxidoreductase activity|flavin adenine dinucleotide binding|oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor				0	Breast(41;0.226)					TCAGAAAATAAGATCTTCAGA	0.328													5	131					0	0	0.000602214	0	0
DDHD1	80821	broad.mit.edu	37	14	53539401	53539401	+	Missense_Mutation	SNP	G	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr14:53539401G>T	uc001xai.2	-	6	1647	c.1417C>A	c.(1417-1419)CCT>ACT	p.P473T	DDHD1_uc001xaj.2_Missense_Mutation_p.P480T|DDHD1_uc001xah.2_Missense_Mutation_p.P473T|DDHD1_uc001xag.2_Missense_Mutation_p.P55T	NM_001160148	NP_001153620	Q8NEL9	DDHD1_HUMAN	DDHD domain containing 1 isoform c	473					lipid catabolic process	cytoplasm	hydrolase activity|metal ion binding			ovary(2)	2	Breast(41;0.037)					ACTTTGTCAGGAGTAATGGAA	0.333													23	26					2.79863e-10	3.51235e-09	0.000720815	1	0
KCNH5	27133	broad.mit.edu	37	14	63473173	63473173	+	Missense_Mutation	SNP	A	G	G			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr14:63473173A>G	uc001xfx.2	-	3	266	c.215T>C	c.(214-216)TTG>TCG	p.L72S	KCNH5_uc001xfy.2_Missense_Mutation_p.L72S|KCNH5_uc001xfz.1_Missense_Mutation_p.L14S|KCNH5_uc001xga.2_Missense_Mutation_p.L14S	NM_139318	NP_647479	Q8NCM2	KCNH5_HUMAN	potassium voltage-gated channel, subfamily H,	72	Cytoplasmic (Potential).|PAS.				regulation of transcription, DNA-dependent	integral to membrane	calmodulin binding|two-component sensor activity|voltage-gated potassium channel activity			ovary(4)|skin(4)|central_nervous_system(1)	9				OV - Ovarian serous cystadenocarcinoma(108;0.00958)|BRCA - Breast invasive adenocarcinoma(234;0.168)		CTTGTCAGTCAATTCCCCATA	0.353													6	51					0	0	8.12818e-05	0	0
PLEKHH1	57475	broad.mit.edu	37	14	68044880	68044880	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr14:68044880C>T	uc001xjl.1	+	19	2857	c.2715C>T	c.(2713-2715)ACC>ACT	p.T905T	PLEKHH1_uc010tsw.1_Silent_p.T473T|PLEKHH1_uc001xjn.1_Silent_p.T420T|PLEKHH1_uc010tsx.1_5'Flank	NM_020715	NP_065766	Q9ULM0	PKHH1_HUMAN	pleckstrin homology domain containing, family H	905	MyTH4.					cytoskeleton	binding				0				all cancers(60;0.000771)|OV - Ovarian serous cystadenocarcinoma(108;0.00502)|BRCA - Breast invasive adenocarcinoma(234;0.011)		TGAAGCAGACCAGCTGCCGCC	0.612													6	35					0	0	8.12818e-05	0	0
ZFP36L1	677	broad.mit.edu	37	14	69256433	69256433	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr14:69256433G>A	uc001xkh.1	-	2	964	c.834C>T	c.(832-834)CTC>CTT	p.L278L	ZFP36L1_uc001xki.1_Silent_p.L278L	NM_004926	NP_004917	Q07352	TISB_HUMAN	butyrate response factor 1	278					regulation of mRNA stability	cytosol|nucleus	DNA binding|mRNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1				all cancers(60;0.00203)|BRCA - Breast invasive adenocarcinoma(234;0.00205)|OV - Ovarian serous cystadenocarcinoma(108;0.0401)		TGGGCCGGAAGAGGAAGGTGG	0.627											OREG0022753	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	13	54					0	0	0.00010058	0	0
ADAM21	8747	broad.mit.edu	37	14	70924317	70924317	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr14:70924317C>T	uc001xmd.2	+	1	101	c.101C>T	c.(100-102)TCC>TTC	p.S34F		NM_003813	NP_003804	Q9UKJ8	ADA21_HUMAN	ADAM metallopeptidase domain 21 preproprotein	34					proteolysis|single fertilization	integral to membrane	metalloendopeptidase activity|zinc ion binding			pancreas(1)|skin(1)	2				all cancers(60;0.00326)|BRCA - Breast invasive adenocarcinoma(234;0.00646)|OV - Ovarian serous cystadenocarcinoma(108;0.0401)		GCTGGGCCCTCCCAGCATTTC	0.547													22	27					0	0	0.000295444	0	0
NUMB	8650	broad.mit.edu	37	14	73746042	73746042	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr14:73746042G>A	uc001xny.1	-	12	1507	c.1187C>T	c.(1186-1188)CCT>CTT	p.P396L	NUMB_uc010aro.1_Intron|NUMB_uc010arp.1_Intron|NUMB_uc010arq.1_Intron|NUMB_uc010arr.1_Intron|NUMB_uc001xoa.1_Intron|NUMB_uc001xnz.1_Missense_Mutation_p.P385L|NUMB_uc001xob.1_Intron|NUMB_uc001xod.1_Intron|NUMB_uc001xoc.1_Missense_Mutation_p.P396L|NUMB_uc010ars.1_Missense_Mutation_p.P385L|NUMB_uc010ttz.1_Intron|NUMB_uc001xoe.2_5'Flank	NM_001005743	NP_001005743	P49757	NUMB_HUMAN	numb homolog isoform 1	396					axon guidance|lateral ventricle development|neuroblast division in subventricular zone|positive regulation of neurogenesis	integral to plasma membrane				ovary(2)|central_nervous_system(1)|skin(1)	4				BRCA - Breast invasive adenocarcinoma(234;0.00471)|OV - Ovarian serous cystadenocarcinoma(108;0.161)		ATGGGCCCAAGGGTTGGTTTC	0.537													8	62					0	0	0.000157383	0	0
ALDH6A1	4329	broad.mit.edu	37	14	74537937	74537937	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr14:74537937G>A	uc001xpo.2	-	6	790	c.691C>T	c.(691-693)CCT>TCT	p.P231S	C14orf45_uc001xpm.1_Intron|ALDH6A1_uc010asa.2_Missense_Mutation_p.P76S|ALDH6A1_uc010tuq.1_Missense_Mutation_p.P218S	NM_005589	NP_005580	Q02252	MMSA_HUMAN	aldehyde dehydrogenase 6A1 precursor	231						mitochondrial matrix|nucleus	fatty-acyl-CoA binding|malonate-semialdehyde dehydrogenase (acetylating) activity|methylmalonate-semialdehyde dehydrogenase (acylating) activity				0				BRCA - Breast invasive adenocarcinoma(234;0.00354)	NADH(DB00157)	GTTCCATCAGGGGCACCAGAA	0.458													11	96					0	0	6.40141e-05	0	0
EIF2B2	8892	broad.mit.edu	37	14	75472568	75472569	+	Splice_Site	DNP	GG	TT	TT	rs149784396		TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr14:75472568_75472569GG>TT	uc001xrc.1	+	5	680	c.598_splice	c.e5-1	p.G200_splice		NM_014239	NP_055054	P49770	EI2BB_HUMAN	eukaryotic translation initiation factor 2B,						cellular response to stimulus|myelination|oligodendrocyte development|ovarian follicle development|regulation of translational initiation|response to glucose stimulus|response to heat|response to peptide hormone stimulus	cytosol|eukaryotic translation initiation factor 2B complex	ATP binding|GTP binding|protein binding|translation initiation factor activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.00661)		TCCCATTGCAGGGTCATGAAAT	0.436													12	380					0	0	6.4e-05	0	0
TTLL5	23093	broad.mit.edu	37	14	76330105	76330105	+	Missense_Mutation	SNP	C	G	G			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr14:76330105C>G	uc001xrx.2	+	29	3627	c.3422C>G	c.(3421-3423)CCC>CGC	p.P1141R	TTLL5_uc010ask.1_Missense_Mutation_p.P1156R|TTLL5_uc001xrz.2_Missense_Mutation_p.P716R|TTLL5_uc001xsa.2_Missense_Mutation_p.P215R	NM_015072	NP_055887	Q6EMB2	TTLL5_HUMAN	tubulin tyrosine ligase-like family, member 5	1141					protein modification process|transcription, DNA-dependent	centrosome|cilium|microtubule basal body|nucleus	tubulin-tyrosine ligase activity			ovary(2)|central_nervous_system(1)	3				BRCA - Breast invasive adenocarcinoma(234;0.029)		AAGTATCACCCCACAGCAGGC	0.562													3	57					0	0	0.00024832	0	0
ISM2	145501	broad.mit.edu	37	14	77948741	77948741	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr14:77948741G>A	uc001xtz.2	-	4	971	c.897C>T	c.(895-897)TTC>TTT	p.F299F	ISM2_uc001xua.2_Intron|ISM2_uc001xty.2_Silent_p.F211F|ISM2_uc010tvl.1_Silent_p.F218F	NM_199296	NP_954993	Q6H9L7	ISM2_HUMAN	isthmin 2 homolog isoform 1	299						extracellular region				skin(1)	1						TAGTTCCATTGAACCAGAGCG	0.328													18	19					0	0	0.000229342	0	0
KIAA1409	57578	broad.mit.edu	37	14	94160683	94160683	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr14:94160683G>A	uc001ybv.1	+	46	7208	c.7125G>A	c.(7123-7125)ATG>ATA	p.M2375I	KIAA1409_uc001ybs.1_Missense_Mutation_p.M2353I	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	2530						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		TGTTTCAGATGGTAGAAATGG	0.388													9	21					0	0	0.000442599	0	0
PPP4R4	57718	broad.mit.edu	37	14	94741753	94741753	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr14:94741753C>T	uc001ycs.1	+	24	2646	c.2492C>T	c.(2491-2493)TCC>TTC	p.S831F		NM_058237	NP_478144	Q6NUP7	PP4R4_HUMAN	HEAT-like repeat-containing protein isoform 1	831						cytoplasm|protein serine/threonine phosphatase complex	protein binding			skin(3)|upper_aerodigestive_tract(1)	4						GTTCCATCTTCCTTTTCTCCT	0.438													12	51					0	0	0.000219431	0	0
SERPINA6	866	broad.mit.edu	37	14	94780794	94780794	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr14:94780794G>A	uc001ycv.2	-	2	296	c.192C>T	c.(190-192)TTC>TTT	p.F64F	SERPINA6_uc010auv.2_RNA	NM_001756	NP_001747	P08185	CBG_HUMAN	corticosteroid binding globulin precursor	64					regulation of proteolysis|transport	extracellular space	serine-type endopeptidase inhibitor activity|steroid binding			skin(3)|ovary(1)|central_nervous_system(1)	5		all_cancers(154;0.0482)|all_epithelial(191;0.166)		COAD - Colon adenocarcinoma(157;0.211)	Alclometasone(DB00240)|Beclomethasone(DB00394)|Ciclesonide(DB01410)|Flumethasone Pivalate(DB00663)|Flunisolide(DB00180)|Fluocinolone Acetonide(DB00591)|Fluocinonide(DB01047)|Fluorometholone(DB00324)|Flurandrenolide(DB00846)|Fluticasone Propionate(DB00588)|Halobetasol Propionate(DB00596)|Medrysone(DB00253)|Mitotane(DB00648)|Paramethasone(DB01384)|Prednisolone(DB00860)|Rimexolone(DB00896)|Triamcinolone(DB00620)	CAGGGGAGATGAAAATGTTCT	0.552													8	27					0	0	0.000157383	0	0
SERPINA13	388007	broad.mit.edu	37	14	95108095	95108095	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr14:95108095G>A	uc001ydt.2	+	2	700	c.612G>A	c.(610-612)GCG>GCA	p.A204A		NR_015340				RecName: Full=Serpin A13; Flags: Precursor;											lung(1)|skin(1)	2						GCCTGGGCGCGAGGGCCAACC	0.632													11	46					0	0	0.00010058	0	0
DYNC1H1	1778	broad.mit.edu	37	14	102477202	102477202	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr14:102477202C>T	uc001yks.2	+	32	6695	c.6531C>T	c.(6529-6531)GCC>GCT	p.A2177A		NM_001376	NP_001367	Q14204	DYHC1_HUMAN	cytoplasmic dynein 1 heavy chain 1	2177					cytoplasmic mRNA processing body assembly|G2/M transition of mitotic cell cycle|microtubule-based movement|mitotic spindle organization|stress granule assembly|transport	centrosome|cytoplasmic dynein complex|cytosol|Golgi apparatus|microtubule	ATP binding|ATPase activity, coupled|microtubule motor activity|protein binding			ovary(7)|central_nervous_system(2)|pancreas(1)	10						AGATGACTGCCCTTCGAGAGG	0.517													11	71					0	0	6.40141e-05	0	0
ADAM6	8755	broad.mit.edu	37	14	106091232	106091232	+	Splice_Site	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr14:106091232C>T	uc010tyt.1	-	3647		c.62275_splice	c.e3647+1		uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron					Parts of antibodies, mostly variable regions.												0						GTGGGTCCCACCTTTGGCTTT	0.617													19	117					0	0	0.000175454	0	0
ADAM6	8755	broad.mit.edu	37	14	106452801	106452801	+	RNA	SNP	C	T	T	rs11553007		TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr14:106452801C>T	uc010tyt.1	-	1975		c.37955G>A								Parts of antibodies, mostly variable regions.												0						TGTGCCACCACTGTTAGGGTT	0.552													9	59					0	0	0.000673444	0	0
ADAM6	8755	broad.mit.edu	37	14	106866589	106866589	+	RNA	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr14:106866589C>T	uc010tyt.1	-	281		c.11642G>A								Parts of antibodies, mostly variable regions.												0						CCTGGCGGATCCAGCTCATCT	0.582													5	24					0	0	8.12818e-05	0	0
ADAM6	8755	broad.mit.edu	37	14	107113761	107113761	+	RNA	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr14:107113761C>T	uc010tyt.1	-	84		c.4112G>A								Parts of antibodies, mostly variable regions.												0						TAATACACAGCCATGTCCTCA	0.512													8	73					0	0	0.000442599	0	0
ADAM6	8755	broad.mit.edu	37	14	107178854	107178854	+	RNA	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr14:107178854G>A	uc010tyt.1	-	32		c.2384C>T								Parts of antibodies, mostly variable regions.												0						TGTGTCCACAGGGTCCATGTT	0.507													8	74					0	0	0.000673444	0	0
LOC646214	646214	broad.mit.edu	37	15	21937189	21937189	+	RNA	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr15:21937189C>T	uc010tzj.1	-	1		c.3551G>A				NR_027053				Homo sapiens mRNA for p21-activated kinase 2 variant protein.												0						AATTCATCTCCTACCAGGTAA	0.408													17	126					0	0	0.000175454	0	0
OR4N3P	390539	broad.mit.edu	37	15	22413999	22413999	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr15:22413999G>A	uc001yuf.2	+	1	298	c.298G>A	c.(298-300)GAT>AAT	p.D100N		NM_001080841	NP_001074310			RecName: Full=Olfactory receptor 4N2; AltName: Full=Olfactory receptor OR14-8; AltName: Full=Olfactory receptor OR14-13;												0						CTTCTTCTGTGATGTCCGACA	0.522													6	68					0	0	3.59834e-05	0	0
HERC2P2	400322	broad.mit.edu	37	15	23326584	23326585	+	Nonsense_Mutation	DNP	GG	TA	TA			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr15:23326584_23326585GG>TA	uc001yvr.2	-	11	1536_1537	c.1336_1337CC>TA	c.(1336-1338)CCG>TAG	p.P446*	HERC2P2_uc010ayf.1_Intron|HERC2P2_uc001yvp.3_RNA					RecName: Full=Putative HERC2-like protein 3;												0						TGGAGACTGCGGATAAAGACCC	0.416													6	185					0	0	6.4e-05	0	0
MKRN3	7681	broad.mit.edu	37	15	23811356	23811356	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr15:23811356C>T	uc001ywh.3	+	1	903	c.427C>T	c.(427-429)CCT>TCT	p.P143S	MKRN3_uc001ywi.2_Intron|MKRN3_uc010ayi.1_Missense_Mutation_p.P143S	NM_005664	NP_005655	Q13064	MKRN3_HUMAN	makorin ring finger protein 3	143						ribonucleoprotein complex	ligase activity|nucleic acid binding|zinc ion binding			lung(6)|large_intestine(2)|ovary(2)	10		all_cancers(20;8.44e-25)|all_epithelial(15;3.69e-22)|Lung NSC(15;2.96e-18)|all_lung(15;2.8e-17)|Breast(32;0.000353)|Colorectal(260;0.14)		all cancers(64;3.02e-06)|Epithelial(43;1.94e-05)|BRCA - Breast invasive adenocarcinoma(123;0.0012)		AGGTGGAGGCCCTAGCACGGC	0.652													12	29					0	0	0.000151284	0	0
MKRN3	7681	broad.mit.edu	37	15	23812282	23812282	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr15:23812282G>A	uc001ywh.3	+	1	1829	c.1353G>A	c.(1351-1353)ATG>ATA	p.M451I	MKRN3_uc001ywi.2_Intron|MKRN3_uc010ayi.1_Intron	NM_005664	NP_005655	Q13064	MKRN3_HUMAN	makorin ring finger protein 3	451						ribonucleoprotein complex	ligase activity|nucleic acid binding|zinc ion binding			lung(6)|large_intestine(2)|ovary(2)	10		all_cancers(20;8.44e-25)|all_epithelial(15;3.69e-22)|Lung NSC(15;2.96e-18)|all_lung(15;2.8e-17)|Breast(32;0.000353)|Colorectal(260;0.14)		all cancers(64;3.02e-06)|Epithelial(43;1.94e-05)|BRCA - Breast invasive adenocarcinoma(123;0.0012)		CTGTGCGAATGGGAGAGGGCA	0.522													6	62					0	0	3.59834e-05	0	0
C15orf2	23742	broad.mit.edu	37	15	24923207	24923207	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr15:24923207G>A	uc001ywo.2	+	1	2667	c.2193G>A	c.(2191-2193)GGG>GGA	p.G731G		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	731					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		CTGGTTCTGGGAACACACAAC	0.537													11	57					0	0	0.000673444	0	0
C15orf2	23742	broad.mit.edu	37	15	24924379	24924379	+	Missense_Mutation	SNP	G	C	C			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr15:24924379G>C	uc001ywo.2	+	1	3839	c.3365G>C	c.(3364-3366)TGC>TCC	p.C1122S		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	1122					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		TTTCAACAGTGCATCCTGCAG	0.473													23	81					0	0	0.00047179	0	0
STRC	161497	broad.mit.edu	37	15	43893105	43893105	+	Silent	SNP	T	G	G			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr15:43893105T>G	uc001zsf.2	-	25	4887	c.4809A>C	c.(4807-4809)CCA>CCC	p.P1603P	STRC_uc010bdl.2_Silent_p.P830P|STRC_uc001zse.2_Silent_p.P121P	NM_153700	NP_714544	Q7RTU9	STRC_HUMAN	stereocilin precursor	1603					sensory perception of sound	cell surface					0		all_cancers(109;3.26e-15)|all_epithelial(112;1.48e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.027)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.56e-07)		GGAGCTCCTCTGGCCGCAGTC	0.557													29	20					0	0	0.000191422	0	0
DUOXA1	90527	broad.mit.edu	37	15	45415159	45415159	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr15:45415159G>A	uc001zuq.1	-	1	83	c.54C>T	c.(52-54)TTC>TTT	p.F18F	DUOXA1_uc010uem.1_Silent_p.F18F|DUOXA1_uc001zup.2_Silent_p.F18F|DUOXA1_uc010bec.2_Silent_p.F18F|DUOXA1_uc001zur.1_Silent_p.F18F|DUOXA1_uc010bed.1_Silent_p.F18F	NM_144565	NP_653166	Q1HG43	DOXA1_HUMAN	Numb-interacting protein	18	Extracellular (Potential).				protein transport	endoplasmic reticulum membrane|integral to membrane				ovary(1)	1		all_cancers(109;6.02e-08)|all_epithelial(112;1.83e-06)|Lung NSC(122;8.3e-05)|all_lung(180;0.000547)|Melanoma(134;0.0417)		all cancers(107;3.82e-18)|GBM - Glioblastoma multiforme(94;4.39e-07)|COAD - Colon adenocarcinoma(120;0.0676)|Colorectal(133;0.0686)		TGTCCATCGGGAAGGTTGGCT	0.527													5	42					0	0	3.59834e-05	0	0
WDR72	256764	broad.mit.edu	37	15	53908429	53908429	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr15:53908429G>A	uc002acj.2	-	15	2016	c.1974C>T	c.(1972-1974)GCC>GCT	p.A658A	WDR72_uc010bfi.1_Silent_p.A658A	NM_182758	NP_877435	Q3MJ13	WDR72_HUMAN	WD repeat domain 72	658										lung(1)|skin(1)	2				all cancers(107;0.0511)		GGCAAAATTTGGCATCAGTAA	0.318													8	13					0	0	0.000442599	0	0
VPS13C	54832	broad.mit.edu	37	15	62223331	62223331	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr15:62223331G>A	uc002agz.2	-	50	6070	c.5996C>T	c.(5995-5997)ACC>ATC	p.T1999I	VPS13C_uc002aha.2_Missense_Mutation_p.T1956I|VPS13C_uc002ahb.1_Missense_Mutation_p.T1999I|VPS13C_uc002ahc.1_Missense_Mutation_p.T1956I	NM_020821	NP_065872	Q709C8	VP13C_HUMAN	vacuolar protein sorting 13C protein isoform 2A	1999					protein localization					ovary(2)	2						ATCATCAAGGGTGCATGTCTT	0.428													30	40					0	0	0.00058488	0	0
DENND4A	10260	broad.mit.edu	37	15	66031164	66031164	+	Silent	SNP	C	G	G			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr15:66031164C>G	uc002aph.2	-	6	1059	c.681G>C	c.(679-681)CCG>CCC	p.P227P	DENND4A_uc002api.2_Silent_p.P227P|DENND4A_uc002apj.3_Silent_p.P227P|DENND4A_uc010ujj.1_Silent_p.P227P	NM_005848	NP_005839	Q7Z401	MYCPP_HUMAN	DENN/MADD domain containing 4A isoform 2	227	UDENN.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4						GAACAGATTCCGGTAGTGAGA	0.338													3	81					0	0	6.4e-05	0	0
TIPIN	54962	broad.mit.edu	37	15	66641719	66641719	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr15:66641719G>A	uc002apr.2	-	5	431	c.345C>T	c.(343-345)TTC>TTT	p.F115F	TIPIN_uc010ujn.1_Silent_p.F14F|TIPIN_uc010ujo.1_Silent_p.F14F|SCARNA14_uc010bhp.1_5'Flank	NM_017858	NP_060328	Q9BVW5	TIPIN_HUMAN	TIMELESS interacting protein	115	Interaction with TIMELESS.				cell division|DNA replication checkpoint|intra-S DNA damage checkpoint|mitosis|positive regulation of cell proliferation|regulation of DNA replication involved in S phase|replication fork protection	cytoplasm|nuclear chromatin	protein binding			ovary(1)	1						GCAGTTTAGGGAATAGCCTAT	0.378													16	176					0	0	0.000308642	0	0
LRRC49	54839	broad.mit.edu	37	15	71300792	71300792	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr15:71300792G>A	uc002asw.2	+	12	1491	c.1244G>A	c.(1243-1245)GGG>GAG	p.G415E	LRRC49_uc002asu.2_Missense_Mutation_p.G405E|LRRC49_uc002asx.2_Missense_Mutation_p.G371E|LRRC49_uc010ukf.1_Missense_Mutation_p.G420E|LRRC49_uc002asy.2_Missense_Mutation_p.G121E|LRRC49_uc002asz.2_Missense_Mutation_p.G387E	NM_017691	NP_060161	Q8IUZ0	LRC49_HUMAN	leucine rich repeat containing 49	415						cytoplasm|microtubule				ovary(1)	1						GAAGTGGACGGGGATACACTT	0.423													10	47					0	0	0.000442599	0	0
MYO9A	4649	broad.mit.edu	37	15	72191272	72191273	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr15:72191272_72191273GG>TT	uc002atl.3	-	25	4044_4045	c.3571_3572CC>AA	c.(3571-3573)CCT>AAT	p.P1191N	MYO9A_uc010biq.2_Missense_Mutation_p.P811N|MYO9A_uc002atn.1_Missense_Mutation_p.P1172N|MYO9A_uc002atk.2_5'UTR|MYO9A_uc002atm.1_5'UTR	NM_006901	NP_008832	B2RTY4	MYO9A_HUMAN	myosin IXA	1191	Tail.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction|visual perception	cytosol|integral to membrane|unconventional myosin complex	actin binding|ATP binding|GTPase activator activity|metal ion binding|motor activity			ovary(1)|pancreas(1)|skin(1)	3						CCATCCTGAAGGGTCTGAACCC	0.371													11	263					0	0	6.4e-05	0	0
CYP11A1	1583	broad.mit.edu	37	15	74637541	74637541	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr15:74637541C>A	uc002axt.2	-	3	624	c.469G>T	c.(469-471)GAG>TAG	p.E157*	CYP11A1_uc002axs.2_5'UTR|CYP11A1_uc010bjm.1_5'UTR|CYP11A1_uc010bjn.1_RNA|CYP11A1_uc010bjo.1_Nonsense_Mutation_p.E157*|CYP11A1_uc010bjp.1_5'Flank|CYP11A1_uc010ulj.1_Intron|CYP11A1_uc010bjq.2_Nonsense_Mutation_p.E157*	NM_000781	NP_000772	P05108	CP11A_HUMAN	cytochrome P450, family 11, subfamily A,	157					C21-steroid hormone biosynthetic process|cholesterol metabolic process|vitamin D metabolic process|xenobiotic metabolic process	mitochondrial matrix	cholesterol monooxygenase (side-chain-cleaving) activity|electron carrier activity|heme binding			ovary(2)	2					Aminoglutethimide(DB00357)|Cholecalciferol(DB00169)|Cimetidine(DB00501)|Clotrimazole(DB00257)|Digitoxin(DB01396)|Digoxin(DB00390)|Medroxyprogesterone(DB00603)|Ouabain(DB01092)|Progesterone(DB00396)|Testosterone(DB00624)|Trilostane(DB01108)	GCCATCACCTCCTGGTTCAGG	0.592													9	37					0.000673444	0.00829425	0.000673444	1	0
CHRNB4	1143	broad.mit.edu	37	15	78922166	78922166	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr15:78922166G>A	uc002bed.1	-	5	593	c.481C>T	c.(481-483)CCC>TCC	p.P161S	CHRNB4_uc002bee.1_Intron|CHRNB4_uc010blh.1_5'UTR	NM_000750	NP_000741	P30926	ACHB4_HUMAN	cholinergic receptor, nicotinic, beta 4	161	Extracellular (Potential).				regulation of neurotransmitter secretion|synaptic transmission involved in micturition|synaptic transmission, cholinergic	cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity				0						TGGTCGAAGGGAAAGTACTTC	0.562													17	32					0	0	0.000566183	0	0
RASGRF1	5923	broad.mit.edu	37	15	79265721	79265721	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr15:79265721G>A	uc002beq.2	-	26	3959	c.3584C>T	c.(3583-3585)ACC>ATC	p.T1195I	RASGRF1_uc002bep.2_Missense_Mutation_p.T1179I|RASGRF1_uc002beo.2_Missense_Mutation_p.T411I	NM_002891	NP_002882	Q13972	RGRF1_HUMAN	Ras protein-specific guanine	1197	Ras-GEF.				activation of Rac GTPase activity|apoptosis|induction of apoptosis by extracellular signals|long-term memory|nerve growth factor receptor signaling pathway|neuron projection development|regulation of Rac protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol|growth cone|plasma membrane|synaptosome	Rho guanyl-nucleotide exchange factor activity			skin(4)|ovary(1)|central_nervous_system(1)	6						GGCCAGGTCGGTGAGGTACAT	0.527													9	39					0	0	0.000442599	0	0
TM6SF1	53346	broad.mit.edu	37	15	83781551	83781551	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr15:83781551C>T	uc002bjp.2	+	2	204	c.95C>T	c.(94-96)TCC>TTC	p.S32F	TM6SF1_uc010bmq.2_Missense_Mutation_p.S32F|TM6SF1_uc002bjq.2_Missense_Mutation_p.S32F|TM6SF1_uc010bmr.2_RNA	NM_023003	NP_075379	Q9BZW5	TM6S1_HUMAN	transmembrane 6 superfamily member 1 isoform 1	32	Helical; (Potential).					integral to membrane				ovary(1)	1						CGTTGCAGTTCCTGGACTATT	0.502													21	67					0	0	0.000229342	0	0
ADAMTSL3	57188	broad.mit.edu	37	15	84700118	84700118	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr15:84700118G>A	uc002bjz.3	+	28	4912	c.4688G>A	c.(4687-4689)AGG>AAG	p.R1563K	ADAMTSL3_uc010bmu.1_Missense_Mutation_p.R1563K	NM_207517	NP_997400	P82987	ATL3_HUMAN	ADAMTS-like 3 precursor	1563						proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(6)|central_nervous_system(5)|lung(5)|large_intestine(4)|breast(3)|skin(2)|kidney(1)|pancreas(1)	27			BRCA - Breast invasive adenocarcinoma(143;0.211)			CGTGCTGTGAGGATGCAGCAG	0.522													29	214					0	0	0.00058488	0	0
SLC28A1	9154	broad.mit.edu	37	15	85478717	85478717	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr15:85478717G>A	uc002blg.2	+	15	1751	c.1549G>A	c.(1549-1551)GAG>AAG	p.E517K	SLC28A1_uc010bnb.2_Missense_Mutation_p.E517K|SLC28A1_uc010upe.1_Intron|SLC28A1_uc010upf.1_Missense_Mutation_p.E517K|SLC28A1_uc010upg.1_Missense_Mutation_p.E517K	NM_004213	NP_004204	O00337	S28A1_HUMAN	solute carrier family 28, member 1 isoform 1	517					nucleobase, nucleoside and nucleotide metabolic process	integral to plasma membrane|membrane fraction	nucleoside binding			skin(2)|ovary(1)	3			BRCA - Breast invasive adenocarcinoma(143;0.0587)			AGGGGCCGAGGAGTGGGTCGG	0.617													15	120					0	0	0.000958276	0	0
AKAP13	11214	broad.mit.edu	37	15	86124251	86124251	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr15:86124251G>A	uc002blv.1	+	7	3122	c.2952G>A	c.(2950-2952)CCG>CCA	p.P984P	AKAP13_uc002blt.1_Silent_p.P984P|AKAP13_uc002blu.1_Silent_p.P984P|AKAP13_uc010bne.1_5'Flank	NM_007200	NP_009131	Q12802	AKP13_HUMAN	A-kinase anchor protein 13 isoform 2	984					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|membrane|membrane fraction|nucleus	cAMP-dependent protein kinase activity|metal ion binding|protein binding|Rho guanyl-nucleotide exchange factor activity|signal transducer activity			central_nervous_system(3)|kidney(2)|urinary_tract(1)|liver(1)|skin(1)|ovary(1)	9						GTAATTCACCGGGTGCATCCT	0.488													11	115					0	0	6.40141e-05	0	0
NTRK3	4916	broad.mit.edu	37	15	88678351	88678351	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr15:88678351G>A	uc002bme.1	-	9	1347	c.1185C>T	c.(1183-1185)TTC>TTT	p.F395F	NTRK3_uc002bmh.2_Silent_p.F395F|NTRK3_uc002bmf.1_Silent_p.F395F|NTRK3_uc010upl.1_Silent_p.F297F|NTRK3_uc010bnh.1_Silent_p.F395F|NTRK3_uc002bmg.2_Silent_p.F395F	NM_001012338	NP_001012338	Q16288	NTRK3_HUMAN	neurotrophic tyrosine kinase, receptor, type 3	395	Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity		ETV6/NTRK3(234)	soft_tissue(85)|kidney(66)|breast(56)|salivary_gland(26)|lung(22)|large_intestine(6)|ovary(6)|stomach(5)|central_nervous_system(3)|pancreas(3)|haematopoietic_and_lymphoid_tissue(2)|skin(1)	281			BRCA - Breast invasive adenocarcinoma(143;0.211)			GCTCCTTGAGGAAGTGGCCAT	0.537			T	ETV6	congenital fibrosarcoma|Secretory breast 					TSP Lung(13;0.10)			42	83					0	0	0.000781405	0	0
WDR93	56964	broad.mit.edu	37	15	90276391	90276391	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr15:90276391C>T	uc002boj.2	+	13	1586	c.1485C>T	c.(1483-1485)TCC>TCT	p.S495S	WDR93_uc010bnr.2_Silent_p.S467S|WDR93_uc010upz.1_Silent_p.S212S	NM_020212	NP_064597	Q6P2C0	WDR93_HUMAN	WD repeat domain 93	495					electron transport chain	mitochondrial inner membrane	oxidoreductase activity, acting on NADH or NADPH			ovary(2)	2	Lung NSC(78;0.0237)|all_lung(78;0.0478)		KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)|BRCA - Breast invasive adenocarcinoma(143;0.128)			CAGACGCCTCCCTCCATCTGG	0.502													19	57					0	0	0.000958276	0	0
BLM	641	broad.mit.edu	37	15	91292959	91292960	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr15:91292959_91292960GG>TT	uc002bpr.2	+	3	558_559	c.461_462GG>TT	c.(460-462)TGG>TTT	p.W154F	BLM_uc010uqh.1_Missense_Mutation_p.W154F|BLM_uc010uqi.1_5'UTR|BLM_uc010bnx.2_Missense_Mutation_p.W154F	NM_000057	NP_000048	P54132	BLM_HUMAN	Bloom syndrome protein	154					double-strand break repair via homologous recombination|G2 phase of mitotic cell cycle|G2/M transition DNA damage checkpoint|negative regulation of cell division|positive regulation of transcription, DNA-dependent|protein oligomerization|regulation of cyclin-dependent protein kinase activity|replication fork processing|replication fork protection|response to X-ray	cytoplasm|lateral element|nuclear matrix|nucleolus|PML body	ATP binding|bubble DNA binding|DNA strand annealing activity|four-way junction helicase activity|G-quadruplex DNA binding|p53 binding			ovary(3)|skin(2)|breast(1)	6	Lung NSC(78;0.0875)|all_lung(78;0.109)		Lung(145;0.189)			ATCAATGATTGGGATGATATGG	0.366			Mis|N|F			leukemia|lymphoma|skin squamous cell |other cancers		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Bloom_syndrome				18	704					0	0	6.4e-05	0	0
BLM	641	broad.mit.edu	37	15	91304303	91304304	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr15:91304303_91304304GG>TT	uc002bpr.2	+	7	1797_1798	c.1700_1701GG>TT	c.(1699-1701)TGG>TTT	p.W567F	BLM_uc010uqh.1_Missense_Mutation_p.W567F|BLM_uc010uqi.1_Missense_Mutation_p.W192F|BLM_uc010bnx.2_Missense_Mutation_p.W567F|BLM_uc002bps.1_Missense_Mutation_p.W129F	NM_000057	NP_000048	P54132	BLM_HUMAN	Bloom syndrome protein	567					double-strand break repair via homologous recombination|G2 phase of mitotic cell cycle|G2/M transition DNA damage checkpoint|negative regulation of cell division|positive regulation of transcription, DNA-dependent|protein oligomerization|regulation of cyclin-dependent protein kinase activity|replication fork processing|replication fork protection|response to X-ray	cytoplasm|lateral element|nuclear matrix|nucleolus|PML body	ATP binding|bubble DNA binding|DNA strand annealing activity|four-way junction helicase activity|G-quadruplex DNA binding|p53 binding			ovary(3)|skin(2)|breast(1)	6	Lung NSC(78;0.0875)|all_lung(78;0.109)		Lung(145;0.189)			GATGATGACTGGGAAGACATAA	0.361			Mis|N|F			leukemia|lymphoma|skin squamous cell |other cancers		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Bloom_syndrome				20	724					0	0	6.4e-05	0	0
BLM	641	broad.mit.edu	37	15	91346750	91346751	+	Splice_Site	DNP	GG	TT	TT			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr15:91346750_91346751GG>TT	uc002bpr.2	+	18	3456	c.3359_splice	c.e18-1	p.G1120_splice	BLM_uc010uqh.1_Splice_Site_p.G1120_splice|BLM_uc010uqi.1_Splice_Site_p.G745_splice|BLM_uc010bnx.2_Intron|BLM_uc002bpt.2_Splice_Site_p.G95_splice	NM_000057	NP_000048	P54132	BLM_HUMAN	Bloom syndrome protein						double-strand break repair via homologous recombination|G2 phase of mitotic cell cycle|G2/M transition DNA damage checkpoint|negative regulation of cell division|positive regulation of transcription, DNA-dependent|protein oligomerization|regulation of cyclin-dependent protein kinase activity|replication fork processing|replication fork protection|response to X-ray	cytoplasm|lateral element|nuclear matrix|nucleolus|PML body	ATP binding|bubble DNA binding|DNA strand annealing activity|four-way junction helicase activity|G-quadruplex DNA binding|p53 binding			ovary(3)|skin(2)|breast(1)	6	Lung NSC(78;0.0875)|all_lung(78;0.109)		Lung(145;0.189)			CTTCTTATCAGGGAGTAAGAGT	0.366			Mis|N|F			leukemia|lymphoma|skin squamous cell |other cancers		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Bloom_syndrome				17	417					0	0	6.4e-05	0	0
PRC1	9055	broad.mit.edu	37	15	91513683	91513684	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr15:91513683_91513684CC>AA	uc002bqm.2	-	12	1679_1680	c.1522_1523GG>TT	c.(1522-1524)GGG>TTG	p.G508L	PRC1_uc002bqn.2_Missense_Mutation_p.G508L|PRC1_uc002bqo.2_Missense_Mutation_p.G508L|PRC1_uc010uqs.1_Missense_Mutation_p.G467L	NM_003981	NP_003972	O43663	PRC1_HUMAN	protein regulator of cytokinesis 1 isoform 1	508	Unstructured, Arg/Lys rich.				cytokinesis|mitotic spindle elongation	cytoplasm|nucleus|spindle microtubule|spindle pole	protein binding			ovary(1)|skin(1)	2	Lung NSC(78;0.0987)|all_lung(78;0.175)					GTAGACTGTCCCTCCAAAGATA	0.525													14	401					0	0	6.4e-05	0	0
SV2B	9899	broad.mit.edu	37	15	91835678	91835679	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr15:91835678_91835679GG>TT	uc002bqv.2	+	12	2339_2340	c.1948_1949GG>TT	c.(1948-1950)GGG>TTG	p.G650L	SV2B_uc010uqv.1_Missense_Mutation_p.G499L|SV2B_uc002bqu.3_RNA	NM_014848	NP_055663	Q7L1I2	SV2B_HUMAN	synaptic vesicle protein 2B homolog	650	Extracellular (Potential).				neurotransmitter transport	acrosomal vesicle|cell junction|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			ovary(3)|central_nervous_system(2)|skin(2)|upper_aerodigestive_tract(1)	8	Lung NSC(78;0.0987)|all_lung(78;0.172)		BRCA - Breast invasive adenocarcinoma(143;0.0895)			TTCTTTTGTTGGGATAACCAAA	0.5													17	539					0	0	6.4e-05	0	0
ST8SIA2	8128	broad.mit.edu	37	15	93007428	93007428	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr15:93007428G>A	uc002bra.2	+	6	1096	c.941G>A	c.(940-942)GGC>GAC	p.G314D	ST8SIA2_uc002brb.2_Missense_Mutation_p.G293D	NM_006011	NP_006002	Q92186	SIA8B_HUMAN	ST8 alpha-N-acetyl-neuraminide	314	Lumenal (Potential).				axon guidance|N-glycan processing|oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	integral to Golgi membrane	alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity				0	Lung NSC(78;0.0893)|all_lung(78;0.125)		BRCA - Breast invasive adenocarcinoma(143;0.0355)|OV - Ovarian serous cystadenocarcinoma(32;0.203)			TACCTCTACGGCTTCTGGCCC	0.522													19	52					0	0	0.000229342	0	0
LASS3	204219	broad.mit.edu	37	15	100942940	100942940	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr15:100942940G>A	uc002bvz.2	-	13	1632	c.1130C>T	c.(1129-1131)CCC>CTC	p.P377L	LASS3_uc002bwa.2_Missense_Mutation_p.P388L|LASS3_uc002bwb.2_Missense_Mutation_p.P377L	NM_178842	NP_849164	Q8IU89	CERS3_HUMAN	LAG1 longevity assurance homolog 3	377						endoplasmic reticulum membrane|integral to membrane|nuclear membrane	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|sphingosine N-acyltransferase activity			ovary(2)|pancreas(1)|skin(1)	4	Lung NSC(78;0.0018)|all_lung(78;0.00278)|Melanoma(26;0.00852)		OV - Ovarian serous cystadenocarcinoma(32;0.000867)|LUSC - Lung squamous cell carcinoma(107;0.132)|Lung(145;0.161)			CTGGCCATTGGGAATGAGGTG	0.463													13	38					0	0	0.000219431	0	0
TARSL2	123283	broad.mit.edu	37	15	102252163	102252163	+	Missense_Mutation	SNP	C	T	T	rs138576200		TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr15:102252163C>T	uc002bxm.2	-	5	787	c.732G>A	c.(730-732)ATG>ATA	p.M244I	TARSL2_uc010usi.1_RNA	NM_152334	NP_689547	A2RTX5	SYTC2_HUMAN	threonyl-tRNA synthetase-like 2	244					threonyl-tRNA aminoacylation	cytoplasm	ATP binding|threonine-tRNA ligase activity			ovary(2)	2	Lung NSC(78;0.000991)|all_lung(78;0.00128)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.000268)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			AGTAAAGCTCCATGGCCTCCC	0.458													11	20					0	0	6.40141e-05	0	0
CACNA1H	8912	broad.mit.edu	37	16	1270426	1270426	+	Missense_Mutation	SNP	C	G	G			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr16:1270426C>G	uc002cks.2	+	35	6742	c.6494C>G	c.(6493-6495)CCT>CGT	p.P2165R	CACNA1H_uc002ckt.2_Missense_Mutation_p.P2159R|CACNA1H_uc002cku.2_Missense_Mutation_p.P860R|CACNA1H_uc010brj.2_Missense_Mutation_p.P876R|CACNA1H_uc002ckv.2_Missense_Mutation_p.P854R	NM_021098	NP_066921	O95180	CAC1H_HUMAN	calcium channel, voltage-dependent, T type,	2165	Cytoplasmic (Potential).				aldosterone biosynthetic process|axon guidance|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|muscle contraction|myoblast fusion|positive regulation of acrosome reaction|regulation of heart contraction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(2)	2		Hepatocellular(780;0.00369)			Flunarizine(DB04841)|Mibefradil(DB01388)	AGCGGGGAGCCTGGGGAGGCG	0.716													4	23					0	0	0.000602214	0	0
MAPK8IP3	23162	broad.mit.edu	37	16	1811260	1811260	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr16:1811260C>T	uc002cmk.2	+	13	1610	c.1490C>T	c.(1489-1491)CCC>CTC	p.P497L	MAPK8IP3_uc002cml.2_Missense_Mutation_p.P491L|MAPK8IP3_uc010uvl.1_Missense_Mutation_p.P498L	NM_015133	NP_055948	Q9UPT6	JIP3_HUMAN	mitogen-activated protein kinase 8 interacting	497	Potential.				vesicle-mediated transport	Golgi membrane	kinesin binding|MAP-kinase scaffold activity|protein kinase binding			breast(2)|central_nervous_system(1)	3						CGCCGTGAACCCAAAGAAGAG	0.582													14	67					0	0	0.00074312	0	0
ABCA3	21	broad.mit.edu	37	16	2347406	2347406	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr16:2347406C>T	uc002cpy.1	-	17	2899	c.2187G>A	c.(2185-2187)CTG>CTA	p.L729L	ABCA3_uc010bsk.1_Silent_p.L671L|ABCA3_uc010bsl.1_Silent_p.L729L	NM_001089	NP_001080	Q99758	ABCA3_HUMAN	ATP-binding cassette, sub-family A member 3	729	ABC transporter 1.				response to drug	integral to membrane|lamellar body|membrane fraction|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			breast(5)|ovary(5)|central_nervous_system(3)|upper_aerodigestive_tract(1)|lung(1)|skin(1)	16		Ovarian(90;0.17)				TGCGGTCTCCCAGCAGGTCAG	0.627													32	25					0	0	0.00058488	0	0
ZNF75A	7627	broad.mit.edu	37	16	3367756	3367756	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr16:3367756C>T	uc002cut.3	+	6	1304	c.778C>T	c.(778-780)CTT>TTT	p.L260F	ZNF75A_uc002cuv.3_RNA	NM_153028	NP_694573	Q96N20	ZN75A_HUMAN	zinc finger protein 75a	260	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)	1						GAACTCCCACCTTATTAAACA	0.423													5	39					0	0	8.12818e-05	0	0
TFAP4	7023	broad.mit.edu	37	16	4311931	4311932	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr16:4311931_4311932GG>AA	uc010uxg.1	-	4	627_628	c.373_374CC>TT	c.(373-375)CCC>TTC	p.P125F		NM_003223	NP_003214	Q01664	TFAP4_HUMAN	transcription factor AP-4 (activating enhancer	125					DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|negative regulation by host of viral transcription|negative regulation of cell cycle arrest|negative regulation of cell proliferation|negative regulation of cyclin-dependent protein kinase activity|negative regulation of DNA binding|negative regulation of transcription, DNA-dependent|positive regulation by host of viral transcription|positive regulation of apoptosis|positive regulation of transcription from RNA polymerase II promoter|protein complex assembly|regulation of S phase of mitotic cell cycle	transcriptional repressor complex	E-box binding|histone deacetylase binding|protein homodimerization activity|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity			ovary(1)	1						CCGTCGCTTGGGGGACGAGCCG	0.653											OREG0023575	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	8					0	0	6.4e-05	0	0
CORO7	79585	broad.mit.edu	37	16	4408059	4408059	+	Missense_Mutation	SNP	A	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr16:4408059A>T	uc002cwh.3	-	25	2623	c.2503T>A	c.(2503-2505)TGG>AGG	p.W835R	CORO7_uc002cwe.2_RNA|CORO7_uc002cwf.2_Missense_Mutation_p.W835R|CORO7_uc002cwg.3_Missense_Mutation_p.W615R|CORO7_uc010uxh.1_Missense_Mutation_p.W817R|CORO7_uc010uxi.1_Missense_Mutation_p.W750R|CORO7_uc002cwi.1_3'UTR	NM_024535	NP_078811	P57737	CORO7_HUMAN	coronin 7	835						cytoplasmic membrane-bounded vesicle|cytosol|Golgi membrane|integral to membrane of membrane fraction|soluble fraction					0						ACAGGCTCCCAGATCACAGCC	0.617													12	16					0	0	0.00010058	0	0
C16orf68	79091	broad.mit.edu	37	16	8735995	8735995	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr16:8735995C>T	uc002cyz.2	+	8	1114	c.838C>T	c.(838-840)CCC>TCC	p.P280S	C16orf68_uc002cza.2_Missense_Mutation_p.P224S	NM_024109	NP_077014	Q9BUU2	MET22_HUMAN	hypothetical protein LOC79091	280							methyltransferase activity				0						TCCCAAGGTCCCCTTCAGTTG	0.483													15	41					0	0	0.000219431	0	0
USP7	7874	broad.mit.edu	37	16	8995010	8995010	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr16:8995010G>A	uc002czl.2	-	19	2328	c.2129C>T	c.(2128-2130)TCC>TTC	p.S710F	USP7_uc010uyk.1_Missense_Mutation_p.S611F|USP7_uc002czj.2_RNA|USP7_uc010uyj.1_Missense_Mutation_p.S611F|USP7_uc002czk.2_Missense_Mutation_p.S694F	NM_003470	NP_003461	Q93009	UBP7_HUMAN	ubiquitin specific peptidase 7	710	Interaction with ICP0/VMW110.				interspecies interaction between organisms|multicellular organismal development|protein deubiquitination|regulation of sequence-specific DNA binding transcription factor activity|ubiquitin-dependent protein catabolic process	cytoplasm|PML body	cysteine-type endopeptidase activity|p53 binding|protein C-terminus binding|transcription factor binding|ubiquitin protein ligase binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(3)	3						TATTTTACAGGATATTGGTGT	0.358													12	78					0	0	0.000219431	0	0
GRIN2A	2903	broad.mit.edu	37	16	9858016	9858016	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr16:9858016G>A	uc002czo.3	-	13	3933	c.3385C>T	c.(3385-3387)CAC>TAC	p.H1129Y	GRIN2A_uc010uym.1_Missense_Mutation_p.H1129Y|GRIN2A_uc010uyn.1_Missense_Mutation_p.H972Y|GRIN2A_uc002czr.3_Missense_Mutation_p.H1129Y	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	1129	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	GGATCTAAGTGGAAACCAGGC	0.522													14	83					0	0	0.000219431	0	0
ERCC4	2072	broad.mit.edu	37	16	14041989	14041989	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr16:14041989C>T	uc002dce.2	+	11	2545	c.2536C>T	c.(2536-2538)CCT>TCT	p.P846S	ERCC4_uc010uyz.1_Missense_Mutation_p.P396S	NM_005236	NP_005227	Q92889	XPF_HUMAN	excision repair cross-complementing rodent	846	Interaction with EME1 and ERCC1.				double-strand break repair via homologous recombination|meiotic mismatch repair|negative regulation of telomere maintenance|nucleotide-excision repair, DNA damage removal|nucleotide-excision repair, DNA incision, 3'-to lesion|nucleotide-excision repair, DNA incision, 5'-to lesion|resolution of meiotic recombination intermediates|telomere maintenance via telomere shortening|transcription-coupled nucleotide-excision repair	nuclear chromosome, telomeric region|nucleoplasm|nucleotide-excision repair factor 1 complex	damaged DNA binding|protein C-terminus binding|protein N-terminus binding|single-stranded DNA binding|single-stranded DNA specific endodeoxyribonuclease activity			lung(4)|ovary(3)|skin(2)|pancreas(1)	10						GAAGTATAATCCTGGTCCCCA	0.498			Mis|N|F			skin basal cell|skin squamous cell|melanoma		Direct_reversal_of_damage|NER	Xeroderma_Pigmentosum				6	39					0	0	3.59834e-05	0	0
BFAR	51283	broad.mit.edu	37	16	14738351	14738352	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr16:14738351_14738352GG>TT	uc002dco.2	+	2	429_430	c.148_149GG>TT	c.(148-150)GGG>TTG	p.G50L	BFAR_uc002dcm.2_Missense_Mutation_p.G50L|BFAR_uc002dcn.2_Missense_Mutation_p.G50L|BFAR_uc002dcp.2_Missense_Mutation_p.G50L|BFAR_uc010uzh.1_5'UTR	NM_016561	NP_057645	Q9NZS9	BFAR_HUMAN	bifunctional apoptosis regulator	50	RING-type.|Cytoplasmic (Potential).				anti-apoptosis|apoptosis	endoplasmic reticulum membrane|integral to plasma membrane|membrane fraction	structural molecule activity|zinc ion binding			ovary(1)|skin(1)	2						CTTGAACTGTGGGCACAGCTTC	0.48													9	112					0	0	6.4e-05	0	0
ACSM2A	123876	broad.mit.edu	37	16	20486689	20486689	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr16:20486689C>T	uc010bwe.2	+	8	1139	c.900C>T	c.(898-900)CTC>CTT	p.L300L	ACSM2A_uc010bwd.1_RNA|ACSM2A_uc010vax.1_Silent_p.L221L|ACSM2A_uc002dhf.3_Silent_p.L300L|ACSM2A_uc002dhg.3_Silent_p.L300L|ACSM2A_uc010vay.1_Silent_p.L221L|ACSM2A_uc002dhh.3_5'Flank	NM_001010845	NP_001010845	Q08AH3	ACS2A_HUMAN	acyl-CoA synthetase medium-chain family member	300					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|metal ion binding			skin(2)|breast(1)	3						TCCAGACACTCTCCAGTTATC	0.473													7	53					0	0	0.000274275	0	0
SCNN1B	6338	broad.mit.edu	37	16	23379253	23379253	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr16:23379253C>T	uc002dln.2	+	5	1029	c.853C>T	c.(853-855)CCT>TCT	p.P285S		NM_000336	NP_000327	P51168	SCNNB_HUMAN	sodium channel, nonvoltage-gated 1, beta	285	Extracellular (By similarity).				excretion|sensory perception of taste	apical plasma membrane	ligand-gated sodium channel activity|WW domain binding			ovary(3)|breast(2)|large_intestine(1)|pancreas(1)	7				GBM - Glioblastoma multiforme(48;0.0465)	Amiloride(DB00594)|Triamterene(DB00384)	GAAGGCACTTCCTTCGGCCAA	0.498													44	71					0	0	0.000781405	0	0
Unknown	0	broad.mit.edu	37	16	28354376	28354376	+	Missense_Mutation	SNP	T	G	G			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr16:28354376T>G	uc010vcq.1	-	7	829	c.776A>C	c.(775-777)AAC>ACC	p.N259T	uc010vcr.1_Missense_Mutation_p.N277T					SubName: Full=LOC728741 protein;																		GCTCAGGGAGTTATCAGTTAT	0.507													4	65					0	0	0.000602214	0	0
SPN	6693	broad.mit.edu	37	16	29675698	29675698	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr16:29675698G>A	uc002dtm.2	+	2	785	c.649G>A	c.(649-651)GGG>AGG	p.G217R	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|SPN_uc002dtn.2_Missense_Mutation_p.G217R|SPN_uc010bzd.2_RNA	NM_001030288	NP_001025459	P16150	LEUK_HUMAN	sialophorin precursor	217	Extracellular (Potential).				blood coagulation|cellular defense response|chemotaxis|defense response to bacterium|establishment or maintenance of cell polarity|immune response|leukocyte migration|negative regulation of cell adhesion|positive regulation of tumor necrosis factor biosynthetic process	extracellular space|integral to plasma membrane	bacterial cell surface binding|transmembrane receptor activity			central_nervous_system(2)	2						GCCCTCCAGCGGGGCCAGTGG	0.577													33	45					0	0	0.000692331	0	0
CHD9	80205	broad.mit.edu	37	16	53337980	53337980	+	Missense_Mutation	SNP	T	C	C			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr16:53337980T>C	uc002ehb.2	+	30	6226	c.6062T>C	c.(6061-6063)GTA>GCA	p.V2021A	CHD9_uc002egy.2_Missense_Mutation_p.V2021A|CHD9_uc002ehc.2_Missense_Mutation_p.V2021A|CHD9_uc002ehf.2_Missense_Mutation_p.V1135A|CHD9_uc010cbw.2_Intron|CHD9_uc002ehg.1_Missense_Mutation_p.V27A	NM_025134	NP_079410	Q3L8U1	CHD9_HUMAN	chromodomain helicase DNA binding protein 9	2021					cellular lipid metabolic process|chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleoplasm	ATP binding|DNA binding|helicase activity|protein binding			lung(2)|central_nervous_system(1)|breast(1)|skin(1)|ovary(1)|kidney(1)	7		all_cancers(37;0.0212)				CAATATCAAGTAGCACTTTCT	0.413													18	44					0	0	0.000958276	0	0
RPGRIP1L	23322	broad.mit.edu	37	16	53682966	53682967	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr16:53682966_53682967GG>TT	uc002ehp.2	-	16	2277_2278	c.2213_2214CC>AA	c.(2212-2214)CCC>CAA	p.P738Q	RPGRIP1L_uc002eho.3_Missense_Mutation_p.P738Q|RPGRIP1L_uc010vgy.1_Missense_Mutation_p.P738Q|RPGRIP1L_uc010cbx.2_Missense_Mutation_p.P738Q|RPGRIP1L_uc010vgz.1_Missense_Mutation_p.P738Q	NM_015272	NP_056087	Q68CZ1	FTM_HUMAN	RPGRIP1-like isoform a	738					negative regulation of G-protein coupled receptor protein signaling pathway	cell-cell junction|centrosome|cilium axoneme|microtubule basal body	thromboxane A2 receptor binding			ovary(1)	1		all_cancers(37;0.0973)				CTTGATCCATGGGAACTCTTAA	0.401													13	484					0	0	6.4e-05	0	0
CDH16	1014	broad.mit.edu	37	16	66948256	66948256	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr16:66948256C>T	uc002eql.2	-	7	716	c.643G>A	c.(643-645)GAC>AAC	p.D215N	CDH16_uc010cdy.2_Missense_Mutation_p.D215N|CDH16_uc002eqm.2_Intron	NM_004062	NP_004053	O75309	CAD16_HUMAN	cadherin 16 precursor	215	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|upper_aerodigestive_tract(1)	3		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0877)|Epithelial(162;0.203)		TCACCCATGTCCTTGACCTGT	0.612													5	36					0	0	3.59834e-05	0	0
HYDIN	54768	broad.mit.edu	37	16	71007785	71007785	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr16:71007785G>A	uc002ezr.2	-	34	5301	c.5173C>T	c.(5173-5175)CAT>TAT	p.H1725Y		NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	1726										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				ACTTGGAGATGATTGGAAAGC	0.488													15	81					0	0	0.000566183	0	0
HYDIN	54768	broad.mit.edu	37	16	71025223	71025223	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr16:71025223C>T	uc002ezr.2	-	25	3990	c.3862G>A	c.(3862-3864)GAT>AAT	p.D1288N		NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	1288										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				CACCGTACATCTGAGATCACA	0.473													5	24					0	0	3.59834e-05	0	0
HYDIN	54768	broad.mit.edu	37	16	71103214	71103214	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr16:71103214G>A	uc002ezr.2	-	14	2058	c.1930C>T	c.(1930-1932)CCT>TCT	p.P644S	HYDIN_uc010cfz.1_Missense_Mutation_p.P389S|HYDIN_uc002ezv.2_Missense_Mutation_p.P644S|HYDIN_uc010vmc.1_Missense_Mutation_p.P661S|HYDIN_uc010vmd.1_Missense_Mutation_p.P671S|HYDIN_uc002ezw.3_Missense_Mutation_p.P661S	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	644										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				CCACAGTCAGGAGAGATGGTG	0.453													4	36					0	0	0.000673444	0	0
HYDIN	54768	broad.mit.edu	37	16	71212863	71212863	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr16:71212863C>T	uc002ezr.2	-	4	477	c.349G>A	c.(349-351)GAA>AAA	p.E117K	HYDIN_uc010cfz.1_5'UTR|HYDIN_uc002ezv.2_Missense_Mutation_p.E117K|HYDIN_uc010vmc.1_Missense_Mutation_p.E134K|HYDIN_uc010vmd.1_Missense_Mutation_p.E144K|HYDIN_uc002ezw.3_Missense_Mutation_p.E134K	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	117										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				AGTGGAACTTCATAGACTTCA	0.393													12	41					0	0	6.40141e-05	0	0
WDR59	79726	broad.mit.edu	37	16	74946186	74946186	+	Silent	SNP	G	A	A	rs146814017		TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr16:74946186G>A	uc002fdh.1	-	14	1401	c.1299C>T	c.(1297-1299)TTC>TTT	p.F433F	WDR59_uc002fdi.2_Silent_p.F433F|WDR59_uc002fdj.2_Silent_p.F433F|WDR59_uc002fdg.1_Silent_p.F25F	NM_030581	NP_085058	Q6PJI9	WDR59_HUMAN	WD repeat domain 59	433	RWD.									ovary(1)|breast(1)	2						ACTGTGCAGGGAACTTCACCA	0.522													11	48					0	0	0.000673444	0	0
ADAMTS18	170692	broad.mit.edu	37	16	77389917	77389917	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr16:77389917G>A	uc002ffc.3	-	9	1799	c.1380C>T	c.(1378-1380)ATC>ATT	p.I460I	ADAMTS18_uc010chc.1_Silent_p.I48I|ADAMTS18_uc002ffe.1_Silent_p.I156I|ADAMTS18_uc010vni.1_RNA	NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	460	Peptidase M12B.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						TGGGAGACATGATATTGCCTT	0.448													11	37					0	0	0.000219431	0	0
ATMIN	23300	broad.mit.edu	37	16	81077589	81077589	+	Missense_Mutation	SNP	A	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr16:81077589A>T	uc002ffz.1	+	4	1504	c.1486A>T	c.(1486-1488)AGT>TGT	p.S496C	ATMIN_uc002fga.2_Missense_Mutation_p.S338C|ATMIN_uc010vnn.1_Missense_Mutation_p.S267C|ATMIN_uc002fgb.1_Missense_Mutation_p.S338C	NM_015251	NP_056066	O43313	ATMIN_HUMAN	ATM interactor	496					response to DNA damage stimulus	nucleus	zinc ion binding				0						AACTCAAACCAGTGGGATAGA	0.448													17	36					0	0	0.000566183	0	0
SDR42E1	93517	broad.mit.edu	37	16	82032986	82032986	+	Silent	SNP	G	A	A	rs1143453		TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr16:82032986G>A	uc002fgu.2	-	3	1040	c.912C>T	c.(910-912)CTC>CTT	p.L304L		NM_145168	NP_660151	Q8WUS8	D42E1_HUMAN	short chain dehydrogenase/reductase family 42E,	304					steroid biosynthetic process	integral to membrane	3-beta-hydroxy-delta5-steroid dehydrogenase activity|binding				0						GGAAGTTGTAGAGTCGACCCA	0.463													16	25					0	0	0.000958276	0	0
HSD17B2	3294	broad.mit.edu	37	16	82101883	82101883	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr16:82101883G>A	uc002fgv.2	+	2	546	c.374G>A	c.(373-375)CGA>CAA	p.R125Q		NM_002153	NP_002144	P37059	DHB2_HUMAN	hydroxysteroid (17-beta) dehydrogenase 2	125					response to retinoic acid|steroid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	17-alpha,20-alpha-dihydroxypregn-4-en-3-one dehydrogenase activity|binding|estradiol 17-beta-dehydrogenase activity|testosterone 17-beta-dehydrogenase (NAD+) activity			ovary(1)|central_nervous_system(1)	2					NADH(DB00157)	GAGGAATTGCGAAGAACCTGC	0.527													15	19					0	0	0.00074312	0	0
PRPF8	10594	broad.mit.edu	37	17	1579541	1579541	+	Silent	SNP	A	G	G			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr17:1579541A>G	uc002fte.2	-	17	2626	c.2512T>C	c.(2512-2514)TTG>CTG	p.L838L		NM_006445	NP_006436	Q6P2Q9	PRP8_HUMAN	U5 snRNP-specific protein	838						catalytic step 2 spliceosome|nuclear speck|U5 snRNP	protein binding|RNA binding			lung(4)|ovary(2)	6				UCEC - Uterine corpus endometrioid carcinoma (25;0.0855)		AAGATGAGCAACTTGGTGTCA	0.522													23	63					0	0	0.000375601	0	0
RAP1GAP2	23108	broad.mit.edu	37	17	2901588	2901588	+	Missense_Mutation	SNP	C	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr17:2901588C>A	uc010ckd.2	+	14	1208	c.1118C>A	c.(1117-1119)CCA>CAA	p.P373Q	RAP1GAP2_uc010cke.2_Missense_Mutation_p.P358Q	NM_015085	NP_055900	Q684P5	RPGP2_HUMAN	RAP1 GTPase activating protein 2 isoform 1	373	Rap-GAP.				regulation of small GTPase mediated signal transduction	centrosome|cytosol|perinuclear region of cytoplasm	GTPase activator activity			ovary(1)	1						CCGTTTGTCCCAGACATGATA	0.473													9	103					0.000274275	0.00340523	0.000274275	1	0
ZZEF1	23140	broad.mit.edu	37	17	3917765	3917765	+	Missense_Mutation	SNP	G	C	C	rs142020410		TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr17:3917765G>C	uc002fxe.2	-	50	8254	c.8190C>G	c.(8188-8190)TTC>TTG	p.F2730L	ZZEF1_uc002fxg.1_Missense_Mutation_p.F51L	NM_015113	NP_055928	O43149	ZZEF1_HUMAN	zinc finger, ZZ type with EF hand domain 1	2730							calcium ion binding|zinc ion binding			ovary(2)|central_nervous_system(1)|pancreas(1)	4						ACTGAGAGTCGAATTTGATTG	0.478													52	51					0	0	0.000781405	0	0
ZZEF1	23140	broad.mit.edu	37	17	3999198	3999198	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr17:3999198C>T	uc002fxe.2	-	11	1904	c.1840G>A	c.(1840-1842)GAA>AAA	p.E614K	ZZEF1_uc002fxk.1_Missense_Mutation_p.E614K	NM_015113	NP_055928	O43149	ZZEF1_HUMAN	zinc finger, ZZ type with EF hand domain 1	614							calcium ion binding|zinc ion binding			ovary(2)|central_nervous_system(1)|pancreas(1)	4						AAGTGTTCTTCCGCACAAAAT	0.398													53	32					0	0	0.000781405	0	0
MYBBP1A	10514	broad.mit.edu	37	17	4455280	4455280	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr17:4455280G>A	uc002fyb.3	-	8	980	c.918C>T	c.(916-918)TTC>TTT	p.F306F	MYBBP1A_uc002fxz.3_Silent_p.F306F	NM_014520	NP_055335	Q9BQG0	MBB1A_HUMAN	MYB binding protein 1a isoform 2	306	Interaction with MYB (By similarity).				nucleocytoplasmic transport|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|NLS-dependent protein nuclear import complex|nucleolus	DNA binding|DNA-directed DNA polymerase activity|transcription factor binding			ovary(1)|skin(1)	2						CCAGCAGGCGGAAACACAGGT	0.642													19	53					0	0	0.000295444	0	0
ZMYND15	84225	broad.mit.edu	37	17	4647960	4647960	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr17:4647960C>T	uc002fyt.2	+	10	1646	c.1607C>T	c.(1606-1608)TCA>TTA	p.S536L	ZMYND15_uc002fyv.2_Missense_Mutation_p.S575L|ZMYND15_uc002fyu.2_Missense_Mutation_p.S575L	NM_032265	NP_115641	Q9H091	ZMY15_HUMAN	zinc finger, MYND-type containing 15 isoform 2	536							zinc ion binding				0						TCCGGCATATCAGCACGGCCC	0.632													18	29					0	0	0.00074312	0	0
DLG4	1742	broad.mit.edu	37	17	7107071	7107072	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr17:7107071_7107072GG>AA	uc002get.3	-	7	1604_1605	c.403_404CC>TT	c.(403-405)CCA>TTA	p.P135L	DLG4_uc010vtm.1_RNA|DLG4_uc010vtn.1_Missense_Mutation_p.P32L|DLG4_uc010cly.2_Missense_Mutation_p.P89L|DLG4_uc010vto.1_Missense_Mutation_p.P132L|DLG4_uc002geu.2_Missense_Mutation_p.P89L	NM_001365	NP_001356	P78352	DLG4_HUMAN	post-synaptic density protein 95 isoform 1	92	PDZ 1.				axon guidance|learning|protein complex assembly|protein localization to synapse|signal transduction|synaptic transmission	cell junction|cortical cytoskeleton|endocytic vesicle membrane|neuron spine|postsynaptic density|postsynaptic membrane|synaptosome	protein binding|protein C-terminus binding			ovary(1)|breast(1)	2						GAAAATGGATGGGTCGTCACCG	0.609													11	26					0	0	6.4e-05	0	0
DNAH2	146754	broad.mit.edu	37	17	7690336	7690336	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr17:7690336C>T	uc002giu.1	+	41	6602	c.6588C>T	c.(6586-6588)ATC>ATT	p.I2196I		NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	2196	AAA 2 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				GCGAGCGCATCGCGATGCCCG	0.637													7	19					0	0	8.12818e-05	0	0
C17orf68	80169	broad.mit.edu	37	17	8132524	8132524	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr17:8132524C>T	uc002gkq.3	-	20	3216	c.3157G>A	c.(3157-3159)GGA>AGA	p.G1053R	C17orf68_uc010cnv.2_Intron	NM_025099	NP_079375	Q2NKJ3	CTC1_HUMAN	alpha accessory factor 132	1053					positive regulation of DNA replication|telomere maintenance	Stn1-Ten1 complex	protein binding|single-stranded DNA binding				0						GTGCACTTTCCCTGGGATGAA	0.552													45	83					0	0	0.000680045	0	0
ARHGEF15	22899	broad.mit.edu	37	17	8216332	8216332	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr17:8216332G>A	uc002glc.2	+	3	815	c.694G>A	c.(694-696)GAG>AAG	p.E232K	ARHGEF15_uc002glb.1_3'UTR|ARHGEF15_uc002gld.2_Missense_Mutation_p.E232K|ARHGEF15_uc010vuw.1_Intron	NM_173728	NP_776089	O94989	ARHGF_HUMAN	Rho guanine exchange factor 15	232					negative regulation of synapse maturation|regulation of Rho protein signal transduction	dendrite|intracellular	GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			ovary(2)|skin(1)	3						GGGGGGCTATGAGGAGGTCCC	0.706													22	44					0	0	0.000229342	0	0
MYH1	4619	broad.mit.edu	37	17	10401063	10401064	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr17:10401063_10401064CC>TT	uc002gmo.2	-	31	4446_4447	c.4352_4353GG>AA	c.(4351-4353)AGG>AAA	p.R1451K	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	1451	Potential.			R -> T (in Ref. 4; CAA27380).		muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						TATCAAAGTTCCTTTGCTTTTT	0.446													22	53					0	0	6.4e-05	0	0
MYH2	4620	broad.mit.edu	37	17	10428104	10428104	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr17:10428104C>T	uc010coi.2	-	34	5069	c.4941G>A	c.(4939-4941)AGG>AGA	p.R1647R	uc002gml.1_Intron|MYH2_uc002gmp.3_Silent_p.R1647R|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	1647	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						TCCTGTAGTTCCTCAGGGCCT	0.502													17	69					0	0	0.000132079	0	0
MYH2	4620	broad.mit.edu	37	17	10438462	10438462	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr17:10438462C>T	uc010coi.2	-	19	2236	c.2108G>A	c.(2107-2109)GGT>GAT	p.G703D	uc002gml.1_Intron|MYH2_uc002gmp.3_Missense_Mutation_p.G703D|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	703	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						TTCCAGCACACCGTTACACCT	0.463													18	25					0	0	0.000566183	0	0
UBB	7314	broad.mit.edu	37	17	16285497	16285497	+	Silent	SNP	A	G	G			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr17:16285497A>G	uc002gpx.2	+	2	414	c.276A>G	c.(274-276)GAA>GAG	p.E92E	UBB_uc010vwe.1_Intron	NM_018955	NP_061828	P0CG47	UBB_HUMAN	ubiquitin B precursor	92	Ubiquitin-like 2.				activation of MAPK activity|anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|anti-apoptosis|apoptosis|cellular membrane organization|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA repair|endosome transport|epidermal growth factor receptor signaling pathway|G1/S transition of mitotic cell cycle|I-kappaB kinase/NF-kappaB cascade|induction of apoptosis by extracellular signals|innate immune response|JNK cascade|M/G1 transition of mitotic cell cycle|mRNA metabolic process|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of type I interferon production|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|S phase of mitotic cell cycle|stress-activated MAPK cascade|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|viral reproduction	cytosol|endocytic vesicle membrane|endosome membrane|nucleoplasm|plasma membrane	protein binding			skin(3)	3				UCEC - Uterine corpus endometrioid carcinoma (92;0.0822)		TCACCCTGGAAGTGGAGCCCA	0.557													3	42					0	0	6.4e-05	0	0
COPS3	8533	broad.mit.edu	37	17	17168147	17168147	+	Missense_Mutation	SNP	T	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr17:17168147T>A	uc002grd.2	-	6	681	c.590A>T	c.(589-591)AAC>ATC	p.N197I	COPS3_uc010vwv.1_Missense_Mutation_p.N177I|COPS3_uc010vww.1_Missense_Mutation_p.N67I	NM_003653	NP_003644	Q9UNS2	CSN3_HUMAN	COP9 constitutive photomorphogenic homolog	197	PCI.				cullin deneddylation|response to light stimulus|signal transduction	cytoplasm|signalosome	protein binding			skin(1)	1						TCTTTCAAAGTTCTTCAGCCC	0.358													48	32					0	0	0.000781405	0	0
MYO15A	51168	broad.mit.edu	37	17	18051478	18051478	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr17:18051478G>A	uc010vxh.1	+	30	6983	c.6645G>A	c.(6643-6645)GCG>GCA	p.A2215A		NM_016239	NP_057323	Q9UKN7	MYO15_HUMAN	myosin XV	2215	Tail.|MyTH4 1.				sensory perception of sound	cytoplasm|myosin complex|stereocilium	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|pancreas(1)|breast(1)|central_nervous_system(1)	9	all_neural(463;0.228)					AGTGGACAGCGACCTATGAGA	0.667													14	13					0	0	0.000308642	0	0
NUFIP2	57532	broad.mit.edu	37	17	27613923	27613923	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr17:27613923C>T	uc002hdy.3	-	2	1178	c.1089G>A	c.(1087-1089)AAG>AAA	p.K363K	NUFIP2_uc002hdx.3_Intron	NM_020772	NP_065823	Q7Z417	NUFP2_HUMAN	nuclear fragile X mental retardation protein	363						nucleus|polysomal ribosome	protein binding|RNA binding			skin(2)|ovary(1)|breast(1)	4			BRCA - Breast invasive adenocarcinoma(11;0.000457)|Colorectal(6;0.0178)|COAD - Colon adenocarcinoma(6;0.0551)			TGAGGTTTTCCTTAACTTTGC	0.403													73	47					0	0	0.000781405	0	0
TAOK1	57551	broad.mit.edu	37	17	27807479	27807479	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr17:27807479C>T	uc002hdz.1	+	7	737	c.543C>T	c.(541-543)TCC>TCT	p.S181S	TAOK1_uc010wbe.1_Silent_p.S181S|TAOK1_uc010wbf.1_Silent_p.S181S|TAOK1_uc002heb.1_Silent_p.S7S	NM_020791	NP_065842	Q7L7X3	TAOK1_HUMAN	TAO kinase 1	181	Protein kinase.				mitotic prometaphase	cytosol|intracellular membrane-bounded organelle	ATP binding|protein serine/threonine kinase activity			upper_aerodigestive_tract(1)|lung(1)|central_nervous_system(1)|skin(1)	4			Colorectal(6;0.198)			CTGCCAATTCCTTTGTGGGAA	0.418													20	24					0	0	0.000375601	0	0
LRRC37B2	147172	broad.mit.edu	37	17	28961033	28961033	+	Missense_Mutation	SNP	T	G	G			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr17:28961033T>G	uc002hfl.3	+	5	727	c.496T>G	c.(496-498)TAT>GAT	p.Y166D	LRRC37B2_uc010csj.1_Intron|LRRC37B2_uc010wbq.1_RNA|LRRC37B2_uc010csi.2_RNA					RecName: Full=Putative LRRC37B-like protein 2;												0						AGTTCCAGGATATGACTATAA	0.249													4	125					0	0	0.000602214	0	0
SLFN11	91607	broad.mit.edu	37	17	33680866	33680866	+	Missense_Mutation	SNP	T	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr17:33680866T>A	uc010ctp.2	-	6	1853	c.1411A>T	c.(1411-1413)ATT>TTT	p.I471F	SLFN11_uc010ctq.2_Missense_Mutation_p.I471F|SLFN11_uc002hjh.3_Missense_Mutation_p.I471F|SLFN11_uc002hjg.3_Missense_Mutation_p.I471F|SLFN11_uc010ctr.2_Missense_Mutation_p.I471F	NM_001104588	NP_001098058	Q7Z7L1	SLN11_HUMAN	schlafen family member 11	471						nucleus	ATP binding			large_intestine(1)|ovary(1)|skin(1)	3		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		GTGTAGAGAATGGGGGTGCTG	0.512													6	14					0	0	8.12818e-05	0	0
SLFN11	91607	broad.mit.edu	37	17	33680868	33680868	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr17:33680868G>A	uc010ctp.2	-	6	1851	c.1409C>T	c.(1408-1410)CCC>CTC	p.P470L	SLFN11_uc010ctq.2_Missense_Mutation_p.P470L|SLFN11_uc002hjh.3_Missense_Mutation_p.P470L|SLFN11_uc002hjg.3_Missense_Mutation_p.P470L|SLFN11_uc010ctr.2_Missense_Mutation_p.P470L	NM_001104588	NP_001098058	Q7Z7L1	SLN11_HUMAN	schlafen family member 11	470						nucleus	ATP binding			large_intestine(1)|ovary(1)|skin(1)	3		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		GTAGAGAATGGGGGTGCTGTT	0.522													6	14					0	0	8.12818e-05	0	0
GPR179	440435	broad.mit.edu	37	17	36483144	36483144	+	Missense_Mutation	SNP	G	C	C			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr17:36483144G>C	uc002hpz.2	-	11	6329	c.6308C>G	c.(6307-6309)GCA>GGA	p.A2103G		NM_001004334	NP_001004334	Q6PRD1	GP179_HUMAN	GPR158-like 1 precursor	2103	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)	3	Breast(7;2.97e-12)	Breast(25;0.0101)|Ovarian(249;0.15)				ACTGCCTGCTGCCTCAGAACT	0.602													6	107					0	0	3.59834e-05	0	0
GRB7	2886	broad.mit.edu	37	17	37899512	37899513	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr17:37899512_37899513CC>TT	uc002hsr.2	+	5	793_794	c.543_544CC>TT	c.(541-546)TTCCGG>TTTTGG	p.R182W	GRB7_uc002hss.2_Missense_Mutation_p.R182W|GRB7_uc010cwc.2_Missense_Mutation_p.R182W|GRB7_uc002hst.2_Missense_Mutation_p.R182W	NM_005310	NP_005301	Q14451	GRB7_HUMAN	growth factor receptor-bound protein 7	182	Ras-associating.				blood coagulation|epidermal growth factor receptor signaling pathway|leukocyte migration|negative regulation of translation|positive regulation of cell migration|stress granule assembly	cytosol|focal adhesion|stress granule	phosphatidylinositol binding|protein kinase binding|SH3/SH2 adaptor activity			lung(2)|ovary(1)|breast(1)|skin(1)	5	all_cancers(6;1.06e-93)|all_epithelial(6;2.33e-113)|Breast(7;9.37e-100)|Lung NSC(9;9.76e-10)|all_lung(9;5.34e-09)|Colorectal(19;0.000442)|Esophageal squamous(10;0.052)		UCEC - Uterine corpus endometrioid carcinoma (11;0.000126)|Epithelial(3;6.86e-60)|all cancers(3;1.65e-53)|BRCA - Breast invasive adenocarcinoma(8;2.03e-43)|STAD - Stomach adenocarcinoma(3;1.43e-12)|Colorectal(5;6.23e-08)|COAD - Colon adenocarcinoma(5;8.58e-06)|Lung(15;0.00193)|LUAD - Lung adenocarcinoma(14;0.0664)|LUSC - Lung squamous cell carcinoma(15;0.171)			GCTTCGTCTTCCGGAAAAACTT	0.609													9	45					0	0	6.4e-05	0	0
GSDMA	284110	broad.mit.edu	37	17	38133095	38133095	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr17:38133095C>T	uc002htl.1	+	12	1240	c.1122C>T	c.(1120-1122)TTC>TTT	p.F374F	GSDMA_uc002htm.1_Silent_p.F374F	NM_178171	NP_835465	Q96QA5	GSDMA_HUMAN	gasdermin 1	374					apoptosis|induction of apoptosis	perinuclear region of cytoplasm					0						AACAGAACTTCCTGCTGGATA	0.522													19	73					0	0	0.000132079	0	0
KRT12	3859	broad.mit.edu	37	17	39022436	39022436	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr17:39022436C>T	uc002hvk.2	-	2	645	c.621G>A	c.(619-621)GCG>GCA	p.A207A		NM_000223	NP_000214	Q99456	K1C12_HUMAN	keratin 12	207	Rod.|Coil 1B.				visual perception	intermediate filament	structural molecule activity			ovary(1)	1		Breast(137;0.000301)				CAGCTAGTCTCGCATTGTCAA	0.478													7	66					0	0	0.000157383	0	0
BECN1	8678	broad.mit.edu	37	17	40971575	40971575	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr17:40971575G>A	uc002ibo.3	-	4	386	c.251C>T	c.(250-252)CCC>CTC	p.P84L	BECN1_uc010whb.1_5'UTR|BECN1_uc010whc.1_Missense_Mutation_p.P84L|BECN1_uc002ibn.2_Missense_Mutation_p.P84L	NM_003766	NP_003757	Q14457	BECN1_HUMAN	beclin 1	84					anti-apoptosis|cell cycle|cellular defense response|cytokinesis|response to virus	membrane	protein binding			ovary(1)	1		Breast(137;0.00104)		BRCA - Breast invasive adenocarcinoma(366;0.0745)		CCTGGCTGGGGGGATGAATCT	0.488											OREG0024429	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	31					0	0	0.000274275	0	0
PSME3	10197	broad.mit.edu	37	17	40986569	40986569	+	Nonsense_Mutation	SNP	T	G	G			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr17:40986569T>G	uc002ibr.2	+	3	339	c.113T>G	c.(112-114)TTA>TGA	p.L38*	PSME3_uc002ibp.2_5'UTR|PSME3_uc002ibq.2_Nonsense_Mutation_p.L38*|PSME3_uc002ibs.2_Nonsense_Mutation_p.L49*|PSME3_uc010whd.1_5'UTR	NM_005789	NP_005780	P61289	PSME3_HUMAN	proteasome activator subunit 3 isoform 1	38					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|regulation of proteasomal protein catabolic process|S phase of mitotic cell cycle|viral reproduction	cytoplasm|nucleus|proteasome activator complex	endopeptidase activator activity|identical protein binding|MDM2 binding|p53 binding				0		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.156)		CCAAAGAAGTTATTAGAACTT	0.353													35	119					0	0	0.000589545	0	0
G6PC	2538	broad.mit.edu	37	17	41053008	41053008	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr17:41053008C>T	uc002icb.1	+	1	194	c.115C>T	c.(115-117)CTC>TTC	p.L39F	LOC388387_uc002ibz.2_5'Flank|LOC388387_uc002iby.2_5'Flank|LOC388387_uc002ica.2_5'Flank|LOC388387_uc010whe.1_5'Flank|G6PC_uc010whf.1_Missense_Mutation_p.L41F	NM_000151	NP_000142	P35575	G6PC_HUMAN	glucose-6-phosphatase, catalytic subunit	39	Helical; (Potential).				gluconeogenesis|glucose homeostasis|transmembrane transport	integral to endoplasmic reticulum membrane	glucose-6-phosphatase activity|phosphate binding			ovary(1)|breast(1)|kidney(1)|skin(1)	4		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.113)		GATCGCAGACCTCAGGAATGC	0.498									Glycogen_Storage_Disease_type_Ia				58	50					0	0	0.000781405	0	0
ARL4D	379	broad.mit.edu	37	17	41477138	41477138	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr17:41477138C>T	uc002idt.2	+	2	219	c.38C>T	c.(37-39)TCC>TTC	p.S13F		NM_001661	NP_001652	P49703	ARL4D_HUMAN	ADP-ribosylation factor-like 4D	13					protein secretion|small GTPase mediated signal transduction	cytoplasm|nucleolus|plasma membrane	GTP binding|GTPase activity|protein binding			ovary(1)	1		Breast(137;0.00908)		BRCA - Breast invasive adenocarcinoma(366;0.155)		CCCACTGCCTCCTCCTTCTTG	0.562													9	46					0	0	0.000673444	0	0
MEOX1	4222	broad.mit.edu	37	17	41719371	41719371	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr17:41719371C>T	uc002idz.2	-	3	701	c.672G>A	c.(670-672)ATG>ATA	p.M224I	MEOX1_uc002iea.2_Missense_Mutation_p.E167K|MEOX1_uc002ieb.2_Missense_Mutation_p.M109I	NM_004527	NP_004518	P50221	MEOX1_HUMAN	mesenchyme homeobox 1 isoform 1	224	Homeobox.					nucleus	sequence-specific DNA binding				0		Breast(137;0.00908)		BRCA - Breast invasive adenocarcinoma(366;0.0753)		GCTTCCACTTCATCCTTCGGT	0.582													19	90					0	0	0.00047179	0	0
MPP3	4356	broad.mit.edu	37	17	41891659	41891659	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr17:41891659G>A	uc002iei.3	-	15	1246	c.1080C>T	c.(1078-1080)TCC>TCT	p.S360S	MPP3_uc002ieh.2_Silent_p.S385S|MPP3_uc002iej.2_RNA	NM_001932	NP_001923	Q13368	MPP3_HUMAN	palmitoylated membrane protein 3	360					signal transduction	cell surface|integral to plasma membrane	guanylate kinase activity			large_intestine(1)|skin(1)	2		Breast(137;0.00394)		BRCA - Breast invasive adenocarcinoma(366;0.119)		CAGCTCCGGAGGACATCTTTC	0.637													29	56					0	0	0.000339439	0	0
MPP2	4355	broad.mit.edu	37	17	41960700	41960700	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr17:41960700C>T	uc010wip.1	-	4	366	c.309G>A	c.(307-309)ACG>ACA	p.T103T	MPP2_uc002ien.1_Silent_p.T75T|MPP2_uc010wim.1_Silent_p.T47T|MPP2_uc002ieo.1_Silent_p.T58T|MPP2_uc010win.1_5'UTR|MPP2_uc010wio.1_Silent_p.T47T|MPP2_uc010czm.1_Silent_p.T41T	NM_005374	NP_005365	Q14168	MPP2_HUMAN	palmitoylated membrane protein 2	82					signal transduction	cell surface|integral to plasma membrane|membrane fraction	guanylate kinase activity				0		Breast(137;0.00314)		BRCA - Breast invasive adenocarcinoma(366;0.12)		CCTCCAGCTTCGTCTCCTCCA	0.662													9	12					0	0	6.40141e-05	0	0
IMP5	162540	broad.mit.edu	37	17	43923759	43923760	+	Missense_Mutation	DNP	TG	AT	AT			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr17:43923759_43923760TG>AT	uc010wka.1	+	1	1487_1488	c.1487_1488TG>AT	c.(1486-1488)ATG>AAT	p.M496N	LOC100128977_uc010wjz.1_Intron	NM_175882	NP_787078	Q8IUH8	IMP5_HUMAN	intramembrane protease 5 precursor	496	Helical; (Potential).					integral to membrane	aspartic-type endopeptidase activity			pancreas(2)	2	Colorectal(2;0.0416)			BRCA - Breast invasive adenocarcinoma(366;0.148)		CTCATGCAGATGGGCCAACCTG	0.614													48	23					0	0	6.4e-05	0	0
HOXB1	3211	broad.mit.edu	37	17	46607066	46607066	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr17:46607066C>T	uc002ink.1	-	2	755	c.749G>A	c.(748-750)TGG>TAG	p.W250*		NM_002144	NP_002135	P14653	HXB1_HUMAN	homeobox B1	250	Homeobox.					nucleus	protein domain specific binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						GTTCTGGAACCAAATCTTGAC	0.592													92	58					0	0	0.000781405	0	0
TTLL6	284076	broad.mit.edu	37	17	46865189	46865189	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr17:46865189G>A	uc010wlo.1	-	12	1608	c.1573C>T	c.(1573-1575)CGG>TGG	p.R525W	TTLL6_uc002iob.2_Missense_Mutation_p.R218W|TTLL6_uc010dbi.2_RNA|TTLL6_uc002ioc.2_Missense_Mutation_p.R278W|TTLL6_uc002iod.2_Missense_Mutation_p.R372W	NM_001130918	NP_001124390	Q8N841	TTLL6_HUMAN	tubulin tyrosine ligase-like family, member 6	477						cilium|microtubule basal body	ATP binding|tubulin binding|tubulin-tyrosine ligase activity				0						TACTCCTCCCGAGCCCTGGAA	0.532													27	46					0	0	0.000339439	0	0
SNF8	11267	broad.mit.edu	37	17	47021290	47021290	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr17:47021290G>A	uc002ioj.2	-	2	160	c.102C>T	c.(100-102)GCC>GCT	p.A34A	SNF8_uc002iok.2_Silent_p.A34A	NM_007241	NP_009172	Q96H20	SNF8_HUMAN	EAP30 subunit of ELL complex	34	Potential.				cellular membrane organization|endosome transport|protein transport|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytosol|late endosome membrane|transcription factor complex	transcription factor binding				0						GACTTACCTGGGCTAGCTGGT	0.527													19	57					0	0	0.00047179	0	0
B4GALNT2	124872	broad.mit.edu	37	17	47243560	47243560	+	Missense_Mutation	SNP	G	A	A	rs147132109		TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr17:47243560G>A	uc002ion.2	+	9	1278	c.1219G>A	c.(1219-1221)GAG>AAG	p.E407K	B4GALNT2_uc010wlt.1_Missense_Mutation_p.E321K|B4GALNT2_uc010wlu.1_Missense_Mutation_p.E347K	NM_153446	NP_703147	Q8NHY0	B4GN2_HUMAN	beta-1,4-N-acetyl-galactosaminyl transferase 2	407	Lumenal (Potential).				lipid glycosylation|negative regulation of cell-cell adhesion|UDP-N-acetylgalactosamine metabolic process	integral to Golgi membrane	acetylgalactosaminyltransferase activity			large_intestine(1)|ovary(1)	2			all cancers(6;0.000316)			TCTCTTCAACGAGGAGACCAA	0.493													19	56					0	0	0.000175454	0	0
SLC35B1	10237	broad.mit.edu	37	17	47781575	47781575	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr17:47781575G>A	uc002iph.1	-	6	629	c.542C>T	c.(541-543)ACC>ATC	p.T181I	SLC35B1_uc002ipi.1_Missense_Mutation_p.T114I|SLC35B1_uc002ipj.1_Missense_Mutation_p.T57I|SLC35B1_uc010wly.1_Missense_Mutation_p.T181I	NM_005827	NP_005818	P78383	S35B1_HUMAN	solute carrier family 35, member B1	181	Helical; (Potential).					endoplasmic reticulum membrane|integral to membrane|microsome	UDP-galactose transmembrane transporter activity				0						TCCATCCAGGGTCAGCGATAA	0.537													11	48					0	0	0.00010058	0	0
CHAD	1101	broad.mit.edu	37	17	48545637	48545637	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr17:48545637C>T	uc010dbr.2	-	1	591	c.538G>A	c.(538-540)GAA>AAA	p.E180K	ACSF2_uc002iqu.2_Intron|ACSF2_uc010wml.1_Intron|ACSF2_uc010wmm.1_Intron|ACSF2_uc010wmn.1_Intron|ACSF2_uc010wmo.1_Intron|CHAD_uc010dbs.2_Missense_Mutation_p.E180K|ACSF2_uc010dbt.1_5'Flank	NM_001267	NP_001258	O15335	CHAD_HUMAN	chondroadherin precursor	180	LRR 5.				regulation of cell growth	proteinaceous extracellular matrix	extracellular matrix structural constituent			ovary(2)|central_nervous_system(1)	3	Breast(11;1.93e-18)		BRCA - Breast invasive adenocarcinoma(22;1.55e-09)			AACGCGTTTTCCGACAGGTAG	0.617													47	48					0	0	0.000781405	0	0
CA10	56934	broad.mit.edu	37	17	49710851	49710851	+	Missense_Mutation	SNP	T	G	G			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr17:49710851T>G	uc002itw.3	-	8	1936	c.950A>C	c.(949-951)AAG>ACG	p.K317T	CA10_uc002itu.3_Missense_Mutation_p.K246T|CA10_uc002itv.3_Missense_Mutation_p.K323T|CA10_uc002itx.3_Missense_Mutation_p.K317T|CA10_uc002ity.3_Missense_Mutation_p.K317T|CA10_uc002itz.2_Missense_Mutation_p.K317T	NM_020178	NP_064563	Q9NS85	CAH10_HUMAN	carbonic anhydrase X	317					brain development					ovary(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(22;4.74e-06)			ATACTGAAGCTTCTGGGCTCG	0.507													5	37					0	0	8.12818e-05	0	0
BZRAP1	9256	broad.mit.edu	37	17	56400098	56400098	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr17:56400098C>T	uc002ivx.3	-	9	2105	c.1234G>A	c.(1234-1236)GGG>AGG	p.G412R	BZRAP1_uc010dcs.2_Missense_Mutation_p.G352R|BZRAP1_uc010wnt.1_Missense_Mutation_p.G412R	NM_004758	NP_004749	O95153	RIMB1_HUMAN	peripheral benzodiazepine receptor-associated	412						mitochondrion	benzodiazepine receptor binding			upper_aerodigestive_tract(2)|skin(1)	3	Medulloblastoma(34;0.127)|all_neural(34;0.237)					TGTGTCACCCCCAGGAGCTGG	0.647													21	19					0	0	0.000375601	0	0
SCN4A	6329	broad.mit.edu	37	17	62019255	62019255	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr17:62019255G>A	uc002jds.1	-	24	4464	c.4387C>T	c.(4387-4389)CGC>TGC	p.R1463C		NM_000334	NP_000325	P35499	SCN4A_HUMAN	voltage-gated sodium channel type 4 alpha	1463	Helical; Voltage-sensor; Name=S4 of repeat IV; (Potential).|IV.				muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(1)|pancreas(1)|skin(1)	3					Lamotrigine(DB00555)	TTGGCCCCGCGGATCAGCCGC	0.617													6	17					0	0	8.12818e-05	0	0
LRRC37A3	374819	broad.mit.edu	37	17	62864647	62864648	+	Nonsense_Mutation	DNP	CC	AA	AA			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr17:62864647_62864648CC>AA	uc002jey.2	-	9	3516_3517	c.2985_2986GG>TT	c.(2983-2988)ATGGGA>ATTTGA	p.995_996MG>I*	LRRC37A3_uc010wqg.1_Nonsense_Mutation_p.113_114MG>I*|LRRC37A3_uc010wqf.1_Nonsense_Mutation_p.33_34MG>I*|LRRC37A3_uc010dek.1_Nonsense_Mutation_p.1_2MG>I*	NM_199340	NP_955372	O60309	L37A3_HUMAN	leucine rich repeat containing 37, member A3	995_996	Extracellular (Potential).					integral to membrane					0						AGCGTTGTTCCCATGTCTCTGA	0.347													9	175					0	0	6.4e-05	0	0
CACNG5	27091	broad.mit.edu	37	17	64876740	64876740	+	Missense_Mutation	SNP	T	C	C			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr17:64876740T>C	uc010wqi.1	+	4	587	c.350T>C	c.(349-351)CTG>CCG	p.L117P	CACNG5_uc002jfr.2_Missense_Mutation_p.L117P|CACNG5_uc010wqj.1_Missense_Mutation_p.L117P	NM_145811	NP_665810	Q9UF02	CCG5_HUMAN	voltage-dependent calcium channel gamma-5	117	Helical; (Potential).				regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|postsynaptic density|postsynaptic membrane	voltage-gated calcium channel activity			pancreas(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(6;1.61e-08)			GGGTTTATCCTGAACAACATC	0.493													4	154					0	0	0.000602214	0	0
ABCA6	23460	broad.mit.edu	37	17	67080433	67080433	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr17:67080433C>T	uc002jhw.1	-	34	4499	c.4324G>A	c.(4324-4326)GGC>AGC	p.G1442S		NM_080284	NP_525023	Q8N139	ABCA6_HUMAN	ATP-binding cassette, sub-family A, member 6	1442	ABC transporter 2.				transport	integral to membrane	ATP binding|ATPase activity			upper_aerodigestive_tract(2)|large_intestine(2)|ovary(2)|skin(1)	7	Breast(10;5.65e-12)					GGGTCTATGCCCGTAGATGGT	0.493													17	34					0	0	0.000422831	0	0
GPR142	350383	broad.mit.edu	37	17	72368703	72368703	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr17:72368703G>A	uc010wqy.1	+	4	1353	c.1353G>A	c.(1351-1353)ATG>ATA	p.M451I	GPR142_uc010wqx.1_Missense_Mutation_p.M363I	NM_181790	NP_861455	Q7Z601	GP142_HUMAN	G protein-coupled receptor 142	451	Cytoplasmic (Potential).					cell junction|cytoplasm|integral to membrane	G-protein coupled receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4						AGCCTGTGATGGAGCCTCCGG	0.632													14	17					0	0	0.000422831	0	0
OTOP2	92736	broad.mit.edu	37	17	72926570	72926570	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr17:72926570C>T	uc010wrp.1	+	7	929	c.840C>T	c.(838-840)ACC>ACT	p.T280T		NM_178160	NP_835454	Q7RTS6	OTOP2_HUMAN	otopetrin 2	280						integral to membrane				ovary(3)|large_intestine(1)	4	all_lung(278;0.172)|Lung NSC(278;0.207)					ACACCCCAACCCCTGTCAGCC	0.582													33	44					0	0	0.000814825	0	0
CBX8	57332	broad.mit.edu	37	17	77769887	77769887	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr17:77769887C>T	uc002jxd.1	-	4	308	c.215G>A	c.(214-216)CGT>CAT	p.R72H		NM_020649	NP_065700	Q9HC52	CBX8_HUMAN	chromobox homolog 8	72					negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear chromatin|PcG protein complex	methylated histone residue binding				0			OV - Ovarian serous cystadenocarcinoma(97;0.0102)|BRCA - Breast invasive adenocarcinoma(99;0.0224)			CTTGGGTCCACGCTTTTTGGG	0.517													41	191					0	0	0.000781405	0	0
RNF213	57674	broad.mit.edu	37	17	78337018	78337018	+	Silent	SNP	T	C	C			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr17:78337018T>C	uc002jyh.1	+	15	5914	c.5691T>C	c.(5689-5691)CGT>CGC	p.R1897R	uc002jyi.1_Intron|RNF213_uc010dhw.1_Silent_p.R279R	NM_020914	NP_065965	Q9HCF4	ALO17_HUMAN	ring finger protein 213	Error:Variant_position_missing_in_Q9HCF4_after_alignment										ovary(8)|lung(6)|breast(3)|large_intestine(2)|central_nervous_system(1)|pancreas(1)	21	all_neural(118;0.0538)		BRCA - Breast invasive adenocarcinoma(99;0.0252)|OV - Ovarian serous cystadenocarcinoma(97;0.057)			TCAGAAGCCGTCTGCAGAACT	0.547													90	29					0	0	0.000781405	0	0
AZI1	22994	broad.mit.edu	37	17	79164543	79164543	+	Silent	SNP	G	A	A	rs139538707		TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr17:79164543G>A	uc002jzp.1	-	24	3212	c.3012C>T	c.(3010-3012)TTC>TTT	p.F1004F	AZI1_uc002jzm.1_Silent_p.F436F|AZI1_uc002jzn.1_Silent_p.F1001F|AZI1_uc002jzo.1_Silent_p.F965F|AZI1_uc010wum.1_Silent_p.F968F|AZI1_uc002jzq.2_Silent_p.F152F	NM_014984	NP_055799	Q9UPN4	AZI1_HUMAN	5-azacytidine induced 1 isoform a	1004					cell differentiation|G2/M transition of mitotic cell cycle|multicellular organismal development|spermatogenesis	centrosome|cytosol|intracellular membrane-bounded organelle				central_nervous_system(2)|large_intestine(1)|ovary(1)	4	all_neural(118;0.0804)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0272)|OV - Ovarian serous cystadenocarcinoma(97;0.117)			GCCGGTCCTCGAACTCCTGGC	0.687													12	16					0	0	0.000219431	0	0
ARHGAP28	79822	broad.mit.edu	37	18	6873748	6873748	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr18:6873748G>A	uc010wzi.1	+	8	893	c.655G>A	c.(655-657)GTG>ATG	p.V219M	ARHGAP28_uc002knc.2_Missense_Mutation_p.V344M|ARHGAP28_uc002knd.2_Missense_Mutation_p.V237M|ARHGAP28_uc002kne.2_Missense_Mutation_p.V237M|ARHGAP28_uc002knf.2_Missense_Mutation_p.V228M			B4DXL2	B4DXL2_HUMAN	SubName: Full=Putative uncharacterized protein ARHGAP28;	219					signal transduction	intracellular				pancreas(1)	1		Colorectal(10;0.168)				AGACCCTGGAGTGAAAGTTCC	0.428													6	15					0	0	3.59834e-05	0	0
ESCO1	114799	broad.mit.edu	37	18	19153975	19153976	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr18:19153975_19153976GG>TT	uc002kth.1	-	4	1763_1764	c.829_830CC>AA	c.(829-831)CCA>AAA	p.P277K	ESCO1_uc002kti.1_RNA	NM_052911	NP_443143	Q5FWF5	ESCO1_HUMAN	establishment of cohesion 1 homolog 1	277					cell cycle|post-translational protein acetylation|regulation of DNA replication	chromatin|nucleus	acyltransferase activity|metal ion binding				0						TGGACTTTTTGGGAGTGTTGTG	0.421													9	154					0	0	6.4e-05	0	0
DSC1	1823	broad.mit.edu	37	18	28711671	28711671	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr18:28711671G>A	uc002kwn.2	-	15	2635	c.2373C>T	c.(2371-2373)TCC>TCT	p.S791S	DSC1_uc002kwm.2_Silent_p.S791S|uc002kwo.1_RNA	NM_024421	NP_077739	Q08554	DSC1_HUMAN	desmocollin 1 isoform Dsc1a preproprotein	791	Cytoplasmic (Potential).				homophilic cell adhesion	desmosome|gap junction|integral to membrane|membrane fraction	calcium ion binding			ovary(3)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(10;0.00778)			CTCCTTTGTTGGAATCCAAAG	0.498													20	35					0	0	0.000720815	0	0
DSG1	1828	broad.mit.edu	37	18	28906962	28906962	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr18:28906962C>T	uc002kwp.2	+	3	422	c.210C>T	c.(208-210)ATC>ATT	p.I70I		NM_001942	NP_001933	Q02413	DSG1_HUMAN	desmoglein 1 preproprotein	70	Extracellular (Potential).|Cadherin 1.				calcium-dependent cell-cell adhesion|cell-cell junction assembly|cellular component disassembly involved in apoptosis|homophilic cell adhesion|protein stabilization	cytosol|desmosome|integral to membrane|internal side of plasma membrane	calcium ion binding|gamma-catenin binding|toxin binding			skin(3)|ovary(2)|central_nervous_system(2)	7			OV - Ovarian serous cystadenocarcinoma(10;0.00559)			GGAACCCAATCGCCAAAGTAG	0.413													9	76					0	0	0.000673444	0	0
DSG4	147409	broad.mit.edu	37	18	28989524	28989524	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr18:28989524G>A	uc002kwq.2	+	13	2178	c.2043G>A	c.(2041-2043)TGG>TGA	p.W681*	DSG4_uc002kwr.2_Nonsense_Mutation_p.W681*	NM_177986	NP_817123	Q86SJ6	DSG4_HUMAN	desmoglein 4 isoform 2 preproprotein	681	Cytoplasmic (Potential).				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(3)	8			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			TGCAGTCTTGGAGAATTGAAG	0.512													21	70					0	0	0.000586117	0	0
ASXL3	80816	broad.mit.edu	37	18	31324745	31324745	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr18:31324745G>A	uc010dmg.1	+	12	4988	c.4933G>A	c.(4933-4935)GAA>AAA	p.E1645K	ASXL3_uc002kxq.2_Missense_Mutation_p.E1352K	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	1645					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						TATCAAAACTGAACATGCCAA	0.438											OREG0024911	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	17	52					0	0	0.000566183	0	0
SETBP1	26040	broad.mit.edu	37	18	42643219	42643219	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr18:42643219C>T	uc010dni.2	+	6	4643	c.4347C>T	c.(4345-4347)TTC>TTT	p.F1449F		NM_015559	NP_056374	Q9Y6X0	SETBP_HUMAN	SET binding protein 1 isoform a	1449						nucleus	DNA binding			upper_aerodigestive_tract(2)|large_intestine(1)	3				Colorectal(1;0.0622)|COAD - Colon adenocarcinoma(74;0.201)		GCAACAACTTCGTGAAGAAGA	0.547									Schinzel-Giedion_syndrome				6	9					0	0	3.59834e-05	0	0
SLC14A2	8170	broad.mit.edu	37	18	43247925	43247925	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr18:43247925G>A	uc010dnj.2	+	15	2166	c.1845G>A	c.(1843-1845)GCG>GCA	p.A615A	SLC14A2_uc002lbe.2_Silent_p.A615A	NM_007163	NP_009094	Q15849	UT2_HUMAN	solute carrier family 14 (urea transporter),	615	Helical; (Potential).					apical plasma membrane|integral to membrane|membrane fraction	protein binding|urea transmembrane transporter activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)|skin(1)	4						CCTGGTGGGCGATCTCAGGCT	0.562													15	50					0	0	0.000422831	0	0
CCDC68	80323	broad.mit.edu	37	18	52609926	52609926	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr18:52609926C>T	uc002lfs.2	-	3	269	c.97G>A	c.(97-99)GAA>AAA	p.E33K	CCDC68_uc002lft.2_Missense_Mutation_p.E33K	NM_001143829	NP_001137301	Q9H2F9	CCD68_HUMAN	coiled-coil domain containing 68	33										skin(1)	1				Colorectal(16;0.0256)|READ - Rectum adenocarcinoma(59;0.21)		TACTCGGTTTCTTCAATAATG	0.388													5	29					0	0	0.000602214	0	0
TCF4	6925	broad.mit.edu	37	18	53254312	53254312	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr18:53254312C>T	uc002lfz.2	-	2	648	c.36G>A	c.(34-36)ACG>ACA	p.T12T	TCF4_uc010xdx.1_5'Flank|TCF4_uc010dph.1_Silent_p.T12T|TCF4_uc010xdy.1_Intron|TCF4_uc002lga.2_Silent_p.T114T|TCF4_uc010dpi.2_Silent_p.T12T	NM_003199	NP_003190	P15884	ITF2_HUMAN	transcription factor 4 isoform b	12	Essential for MYOD1 inhibition (By similarity).				positive regulation of neuron differentiation|protein-DNA complex assembly|transcription initiation from RNA polymerase II promoter	transcription factor complex	E-box binding|protein C-terminus binding|protein heterodimerization activity|RNA polymerase II core promoter proximal region sequence-specific DNA binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|sequence-specific DNA binding RNA polymerase recruiting transcription factor activity|TFIIB-class binding transcription factor activity|TFIIB-class transcription factor binding			ovary(1)|lung(1)	2				Colorectal(16;0.00108)|READ - Rectum adenocarcinoma(59;0.0649)|COAD - Colon adenocarcinoma(17;0.0718)		GCTCTTTGTCCGTCCCTAAGG	0.408													12	73					0	0	0.000151284	0	0
TXNL1	9352	broad.mit.edu	37	18	54281772	54281772	+	Missense_Mutation	SNP	A	C	C			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr18:54281772A>C	uc002lgg.2	-	6	867	c.618T>G	c.(616-618)TTT>TTG	p.F206L	TXNL1_uc010xdz.1_RNA|TXNL1_uc002lgh.2_RNA|TXNL1_uc002lgi.2_Missense_Mutation_p.F206L|TXNL1_uc002lgj.1_Missense_Mutation_p.F206L	NM_004786	NP_004777	O43396	TXNL1_HUMAN	thioredoxin-like 1	206	PITH.				cell redox homeostasis|electron transport chain|glycerol ether metabolic process|transport	cytoplasm	electron carrier activity|protein disulfide oxidoreductase activity				0				READ - Rectum adenocarcinoma(59;0.193)|Colorectal(16;0.211)		CTGCCTCTTCAAAATCCATAG	0.343													3	37					0	0	6.4e-05	0	0
RNF152	220441	broad.mit.edu	37	18	59483638	59483638	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr18:59483638C>T	uc002lih.1	-	2	471	c.59G>A	c.(58-60)AGC>AAC	p.S20N		NM_173557	NP_775828	Q8N8N0	RN152_HUMAN	ring finger protein 152	20	RING-type.				apoptosis|protein K48-linked ubiquitination	integral to membrane|lysosomal membrane	ubiquitin-protein ligase activity|zinc ion binding			breast(1)	1		Colorectal(73;0.186)				GCGCCGGGGGCTGTAGTAATT	0.597													20	62					0	0	0.000229342	0	0
CDH19	28513	broad.mit.edu	37	18	64218473	64218473	+	Missense_Mutation	SNP	T	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr18:64218473T>A	uc002lkc.1	-	5	771	c.633A>T	c.(631-633)AAA>AAT	p.K211N	CDH19_uc010dql.1_RNA|CDH19_uc010xey.1_Missense_Mutation_p.K211N|CDH19_uc002lkd.2_Missense_Mutation_p.K211N	NM_021153	NP_066976	Q9H159	CAD19_HUMAN	cadherin 19, type 2 preproprotein	211	Cadherin 2.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|skin(1)	2		Esophageal squamous(42;0.0132)				CTCTATCCATTTTAGAAGATA	0.313													29	59					0	0	0.000692331	0	0
ZNF407	55628	broad.mit.edu	37	18	72589228	72589228	+	Silent	SNP	G	C	C			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr18:72589228G>C	uc002llw.2	+	4	5010	c.4953G>C	c.(4951-4953)ACG>ACC	p.T1651T	ZNF407_uc010dqu.1_Silent_p.T1651T	NM_017757	NP_060227	Q9C0G0	ZN407_HUMAN	zinc finger protein 407 isoform 1	1651					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2		Esophageal squamous(42;0.131)|Prostate(75;0.173)		BRCA - Breast invasive adenocarcinoma(31;0.184)		AACTCCACACGGGAGAAAAGC	0.483													3	71					0	0	6.4e-05	0	0
STK11	6794	broad.mit.edu	37	19	1218458	1218458	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr19:1218458C>T	uc002lrl.1	+	2	1448	c.333C>T	c.(331-333)ATC>ATT	p.I111I		NM_000455	NP_000446	Q15831	STK11_HUMAN	serine/threonine protein kinase 11	111	Protein kinase.				anoikis|cell cycle arrest|energy reserve metabolic process|insulin receptor signaling pathway|positive regulation of transforming growth factor beta receptor signaling pathway|regulation of fatty acid biosynthetic process|regulation of fatty acid oxidation	cytosol|nucleus	ATP binding|magnesium ion binding|protein serine/threonine kinase activity	p.0?(19)|p.E98_G155del(3)|p.?(3)|p.G52_P179del(1)		lung(174)|cervix(35)|skin(15)|large_intestine(12)|pancreas(6)|gastrointestinal_tract_(site_indeterminate)(5)|stomach(4)|ovary(4)|breast(2)|upper_aerodigestive_tract(1)|testis(1)|liver(1)|biliary_tract(1)|small_intestine(1)|urinary_tract(1)|oesophagus(1)|prostate(1)|kidney(1)	266		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;7.93e-06)|all_lung(49;1.25e-05)|Breast(49;0.000172)|Renal(1328;0.0183)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|Lung(535;0.00942)|STAD - Stomach adenocarcinoma(1328;0.18)		AAAATGTCATCCAGCTGGTGG	0.557		14	D|Mis|N|F|S		NSCLC|pancreatic	jejunal harmartoma|ovarian|testicular|pancreatic			Peutz-Jeghers_syndrome	TSP Lung(3;<1E-08)			54	115					0	0	0.000781405	0	0
ZNF77	58492	broad.mit.edu	37	19	2933614	2933614	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr19:2933614G>A	uc002lws.3	-	4	1642	c.1511C>T	c.(1510-1512)TCC>TTC	p.S504F		NM_021217	NP_067040	Q15935	ZNF77_HUMAN	zinc finger protein 77	504	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|zinc ion binding			ovary(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|GBM - Glioblastoma multiforme(1328;2.11e-07)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|Lung(535;0.174)|STAD - Stomach adenocarcinoma(1328;0.18)		AAGGGACGAGGAACAACTGTA	0.498													22	57					0	0	0.00047179	0	0
INSR	3643	broad.mit.edu	37	19	7267733	7267734	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr19:7267733_7267734CG>AT	uc002mgd.1	-	2	383_384	c.274_275CG>AT	c.(274-276)CGG>ATG	p.R92M	INSR_uc002mge.1_Missense_Mutation_p.R92M|INSR_uc002mgf.2_Missense_Mutation_p.R92M	NM_000208	NP_000199	P06213	INSR_HUMAN	insulin receptor isoform Long precursor	92					activation of MAPK activity|activation of protein kinase B activity|carbohydrate metabolic process|fibroblast growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|glucose homeostasis|heart morphogenesis|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of cell proliferation|positive regulation of developmental growth|positive regulation of DNA replication|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of glycolysis|positive regulation of MAPKKK cascade|positive regulation of mitosis|positive regulation of nitric oxide biosynthetic process|positive regulation of protein kinase B signaling cascade|positive regulation of protein phosphorylation|positive regulation of respiratory burst|protein autophosphorylation|protein heterotetramerization|regulation of embryonic development|regulation of transcription, DNA-dependent|transformation of host cell by virus	caveola|endosome membrane|insulin receptor complex|microsome	ATP binding|GTP binding|insulin binding|insulin receptor activity|insulin receptor substrate binding|insulin-like growth factor I binding|insulin-like growth factor II binding|insulin-like growth factor receptor binding|metal ion binding|phosphatidylinositol 3-kinase binding|PTB domain binding|receptor signaling protein tyrosine kinase activity|SH2 domain binding			ovary(4)|lung(3)|central_nervous_system(2)|large_intestine(1)|stomach(1)|skin(1)	12					Insulin Glargine recombinant(DB00047)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	CCCATAGACCCGGAAGAGCAGC	0.51													12	374					0	0	6.4e-05	0	0
MCOLN1	57192	broad.mit.edu	37	19	7595243	7595243	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr19:7595243C>T	uc002mgo.2	+	12	1556	c.1431C>T	c.(1429-1431)TTC>TTT	p.F477F	MCOLN1_uc002mgp.2_Silent_p.F442F	NM_020533	NP_065394	Q9GZU1	MCLN1_HUMAN	mucolipin 1	477					calcium ion transport|cellular iron ion homeostasis|transferrin transport	integral to plasma membrane|late endosome membrane|lysosomal membrane	cation channel activity|iron ion transmembrane transporter activity			breast(1)	1						TTGTGACGTTCGCCGCCATGC	0.597													20	178					0	0	0.000295444	0	0
XAB2	56949	broad.mit.edu	37	19	7689196	7689196	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr19:7689196C>T	uc002mgx.2	-	7	984	c.958G>A	c.(958-960)GAG>AAG	p.E320K		NM_020196	NP_064581	Q9HCS7	SYF1_HUMAN	XPA binding protein 2	320					transcription, DNA-dependent|transcription-coupled nucleotide-excision repair	catalytic step 2 spliceosome|nucleoplasm	protein binding			central_nervous_system(2)|breast(1)|skin(1)	4						CCCTCCTCCTCGCGCCCCAGC	0.647								Direct_reversal_of_damage|NER					12	51					0	0	0.000151284	0	0
OR2Z1	284383	broad.mit.edu	37	19	8841458	8841458	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr19:8841458C>T	uc010xkg.1	+	1	68	c.68C>T	c.(67-69)TCA>TTA	p.S23L		NM_001004699	NP_001004699	Q8NG97	OR2Z1_HUMAN	olfactory receptor, family 2, subfamily Z,	23	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2						CACTCAGGATCACGCCAGCTC	0.527													8	42					0	0	0.000274275	0	0
OR2Z1	284383	broad.mit.edu	37	19	8841468	8841468	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr19:8841468C>T	uc010xkg.1	+	1	78	c.78C>T	c.(76-78)CTC>CTT	p.L26L		NM_001004699	NP_001004699	Q8NG97	OR2Z1_HUMAN	olfactory receptor, family 2, subfamily Z,	26	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2						CACGCCAGCTCCTCTTCTCCC	0.527													13	44					0	0	0.000151284	0	0
MUC16	94025	broad.mit.edu	37	19	9005597	9005597	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr19:9005597C>T	uc002mkp.2	-	46	40013	c.39809G>A	c.(39808-39810)GGA>GAA	p.G13270E	MUC16_uc010dwi.2_RNA|MUC16_uc010dwj.2_Missense_Mutation_p.G87E|MUC16_uc010xki.1_Intron	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	13272	SEA 8.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGTGTAGGGTCCCAGCTCAGT	0.557													10	95					0	0	0.000673444	0	0
MUC16	94025	broad.mit.edu	37	19	9046505	9046505	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr19:9046505G>A	uc002mkp.2	-	5	35330	c.35126C>T	c.(35125-35127)TCC>TTC	p.S11709F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	11711	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						ACTACTATGGGAAAAACTGGA	0.512													14	93					0	0	0.000958276	0	0
MUC16	94025	broad.mit.edu	37	19	9046965	9046965	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr19:9046965C>T	uc002mkp.2	-	5	34870	c.34666G>A	c.(34666-34668)GAC>AAC	p.D11556N		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	11558	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTACTGGTGTCTGTCCCAGAA	0.517													5	18					0	0	3.59834e-05	0	0
MUC16	94025	broad.mit.edu	37	19	9050038	9050038	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr19:9050038G>A	uc002mkp.2	-	5	31797	c.31593C>T	c.(31591-31593)TTC>TTT	p.F10531F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	10533	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GAACATCAGGGAAAACATATG	0.478													31	206					0	0	0.00058488	0	0
MUC16	94025	broad.mit.edu	37	19	9068327	9068327	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr19:9068327G>A	uc002mkp.2	-	3	19323	c.19119C>T	c.(19117-19119)ACC>ACT	p.T6373T		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	6375	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TTTTCTGGGAGGTGCTAGTCT	0.453													9	25					0	0	0.000673444	0	0
MUC16	94025	broad.mit.edu	37	19	9085397	9085397	+	Missense_Mutation	SNP	T	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr19:9085397T>A	uc002mkp.2	-	1	6622	c.6418A>T	c.(6418-6420)ATC>TTC	p.I2140F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	2140	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TCAGAGCTGATACTTGCCCCC	0.502													5	50					0	0	0.000602214	0	0
CACNA1A	773	broad.mit.edu	37	19	13418659	13418659	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr19:13418659G>A	uc010dze.2	-	15	2162	c.1926C>T	c.(1924-1926)TTC>TTT	p.F642F	CACNA1A_uc010dzc.2_Silent_p.F167F|CACNA1A_uc002mwy.3_Silent_p.F641F|CACNA1A_uc010xne.1_Silent_p.F167F	NM_001127221	NP_001120693	O00555	CAC1A_HUMAN	calcium channel, alpha 1A subunit isoform 3	642	Extracellular (Potential).|II.				cell death|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|membrane depolarization|regulation of insulin secretion	cytoplasm|nucleus	syntaxin binding			large_intestine(2)	2			OV - Ovarian serous cystadenocarcinoma(19;5.07e-21)		Bepridil(DB01244)|Cinnarizine(DB00568)|Loperamide(DB00836)|Nisoldipine(DB00401)|Pregabalin(DB00230)	TCCCTTCATCGAAATTAAACC	0.547													27	62					0	0	0.000279167	0	0
CYP4F2	8529	broad.mit.edu	37	19	16006398	16006398	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr19:16006398G>A	uc002nbs.1	-	3	311	c.261C>T	c.(259-261)GGC>GGT	p.G87G	CYP4F2_uc010xot.1_5'UTR|CYP4F2_uc010xou.1_Intron	NM_001082	NP_001073	P78329	CP4F2_HUMAN	cytochrome P450, family 4, subfamily F,	87					leukotriene metabolic process|long-chain fatty acid metabolic process|very long-chain fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding|leukotriene-B4 20-monooxygenase activity|oxygen binding|protein binding			ovary(1)|skin(1)	2						AGACCTTAAAGCCCTGGGGGT	0.557													35	46					0	0	0.000319135	0	0
HAUS8	93323	broad.mit.edu	37	19	17160816	17160816	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr19:17160816G>A	uc002nfe.2	-	11	1211	c.1100C>T	c.(1099-1101)TCT>TTT	p.S367F	HAUS8_uc002nff.2_Missense_Mutation_p.S366F|HAUS8_uc002nfg.1_Missense_Mutation_p.S305F|HAUS8_uc002nfh.1_Missense_Mutation_p.S366F	NM_033417	NP_219485	Q9BT25	HAUS8_HUMAN	sarcoma antigen NY-SAR-48 isoform a	367					cell division|centrosome organization|mitosis|spindle assembly	centrosome|HAUS complex|microtubule|spindle pole					0						GTCGTCCTCAGACAGGGGCGT	0.617													10	27					0	0	6.40141e-05	0	0
IL12RB1	3594	broad.mit.edu	37	19	18186603	18186603	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr19:18186603C>T	uc002nhw.1	-	7	720	c.656G>A	c.(655-657)GGA>GAA	p.G219E	IL12RB1_uc010xqb.1_Missense_Mutation_p.G219E|IL12RB1_uc002nhx.1_Missense_Mutation_p.G259E|IL12RB1_uc002nhy.2_Missense_Mutation_p.G219E	NM_005535	NP_005526	P42701	I12R1_HUMAN	interleukin 12 receptor, beta 1 isoform 1	219	Extracellular (Potential).|Fibronectin type-III 2.				cellular response to interferon-gamma|interleukin-12-mediated signaling pathway|positive regulation of activated T cell proliferation|positive regulation of defense response to virus by host|positive regulation of interferon-gamma production|positive regulation of memory T cell differentiation|positive regulation of T cell mediated cytotoxicity|positive regulation of T-helper 1 type immune response|positive regulation of T-helper 17 cell lineage commitment|positive regulation of T-helper 17 type immune response	interleukin-12 receptor complex|interleukin-23 receptor complex	cytokine receptor activity			pancreas(1)	1						CCAGGAACTTCCTTGGCTCCC	0.572													12	55					0	0	0.00010058	0	0
FKBP8	23770	broad.mit.edu	37	19	18644121	18644121	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr19:18644121G>A	uc002njk.1	-	7	1092	c.979C>T	c.(979-981)CCC>TCC	p.P327S	FKBP8_uc002nji.1_Missense_Mutation_p.P165S|FKBP8_uc010xqi.1_Missense_Mutation_p.P356S|FKBP8_uc002njj.1_Missense_Mutation_p.P328S|FKBP8_uc002njl.1_Missense_Mutation_p.P328S|FKBP8_uc002njm.1_Missense_Mutation_p.P327S|FKBP8_uc010ebr.1_Missense_Mutation_p.P166S|FKBP8_uc002njn.2_RNA	NM_012181	NP_036313	Q14318	FKBP8_HUMAN	FK506-binding protein 8	327	TPR 3.				apoptosis|interspecies interaction between organisms|intracellular signal transduction|protein folding	integral to endoplasmic reticulum membrane|mitochondrial membrane	FK506 binding|peptidyl-prolyl cis-trans isomerase activity|protein binding			ovary(1)	1						CTCAGGATGGGGATGGCCTCA	0.622													4	6					0	0	3.59834e-05	0	0
ZNF85	7639	broad.mit.edu	37	19	21116903	21116903	+	Missense_Mutation	SNP	G	A	A	rs149214151	byFrequency	TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr19:21116903G>A	uc002npg.3	+	2	204	c.77G>A	c.(76-78)CGG>CAG	p.R26Q	ZNF85_uc002npf.2_RNA|ZNF85_uc002nph.1_RNA|ZNF85_uc010ecn.2_5'UTR|ZNF85_uc010eco.2_5'Flank|ZNF85_uc002npi.2_5'Flank	NM_003429	NP_003420	Q03923	ZNF85_HUMAN	zinc finger protein 85	26	KRAB.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			central_nervous_system(1)	1						ACTGCACAGCGGAATTTATAT	0.373													12	168					0	0	0.000151284	0	0
ZNF98	148198	broad.mit.edu	37	19	22585597	22585597	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr19:22585597G>A	uc002nqt.2	-	3	369	c.247C>T	c.(247-249)CCC>TCC	p.P83S		NM_001098626	NP_001092096	A6NK75	ZNF98_HUMAN	zinc finger protein 98	83	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2		all_cancers(12;0.0536)|all_lung(12;0.00187)|Lung NSC(12;0.0019)|all_epithelial(12;0.00542)|Hepatocellular(1079;0.244)				CTACCTGGGGGTTCAGTTACC	0.403													13	88					0	0	0.00074312	0	0
ZNF681	148213	broad.mit.edu	37	19	23927533	23927533	+	Silent	SNP	T	C	C			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr19:23927533T>C	uc002nrk.3	-	4	961	c.819A>G	c.(817-819)ACA>ACG	p.T273T	ZNF681_uc002nrl.3_Silent_p.T204T|ZNF681_uc002nrj.3_Silent_p.T204T	NM_138286	NP_612143	Q96N22	ZN681_HUMAN	zinc finger protein 681	273	C2H2-type 4; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_lung(12;0.11)|Lung NSC(12;0.163)|all_epithelial(12;0.206)				TATGAATTATTGTATGTGTTG	0.353													21	103					0	0	0.000375601	0	0
ZNF792	126375	broad.mit.edu	37	19	35450222	35450222	+	Missense_Mutation	SNP	C	G	G			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr19:35450222C>G	uc002nxh.1	-	4	924	c.537G>C	c.(535-537)CAG>CAC	p.Q179H		NM_175872	NP_787068	Q3KQV3	ZN792_HUMAN	zinc finger protein 792	179					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_lung(56;4.18e-08)|Lung NSC(56;6.62e-08)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0849)			TCTGCTGCACCTGTTTCCGGG	0.517													7	230					0	0	0.000673444	0	0
CD22	933	broad.mit.edu	37	19	35832709	35832709	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr19:35832709C>T	uc010edt.2	+	9	1953	c.1876C>T	c.(1876-1878)CAC>TAC	p.H626Y	CD22_uc010xst.1_Missense_Mutation_p.H454Y|CD22_uc010edu.2_Missense_Mutation_p.H538Y|CD22_uc010edv.2_Missense_Mutation_p.H626Y|CD22_uc002nzb.3_Missense_Mutation_p.H449Y|CD22_uc010edx.2_RNA	NM_001771	NP_001762	P20273	CD22_HUMAN	CD22 molecule precursor	626	Extracellular (Potential).|Ig-like C2-type 6.				cell adhesion		protein binding|sugar binding			ovary(5)|lung(3)|breast(1)	9	all_lung(56;9.78e-09)|Lung NSC(56;1.46e-08)|Esophageal squamous(110;0.162)		Epithelial(14;5.83e-19)|OV - Ovarian serous cystadenocarcinoma(14;3.19e-18)|all cancers(14;3.41e-16)|LUSC - Lung squamous cell carcinoma(66;0.0417)		OspA lipoprotein(DB00045)	TCCCGTCTCCCACTACACCTG	0.607													4	24					0	0	0.00024832	0	0
PAF1	54623	broad.mit.edu	37	19	39879984	39879984	+	Missense_Mutation	SNP	C	G	G			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr19:39879984C>G	uc002old.2	-	6	574	c.399G>C	c.(397-399)AAG>AAC	p.K133N	PAF1_uc002ole.1_Missense_Mutation_p.K123N|PAF1_uc010xuv.1_RNA|MED29_uc010xuw.1_5'Flank|MED29_uc002olf.2_5'Flank|MED29_uc010xux.1_5'Flank	NM_019088	NP_061961	Q8N7H5	PAF1_HUMAN	Paf1, RNA polymerase II associated factor,	133					histone H2B ubiquitination|histone monoubiquitination|regulation of transcription, DNA-dependent|transcription, DNA-dependent	Cdc73/Paf1 complex	protein binding			pancreas(1)	1	all_cancers(60;9.14e-07)|all_lung(34;4.03e-08)|Lung NSC(34;4.66e-08)|all_epithelial(25;1.88e-06)|Ovarian(47;0.0512)		Epithelial(26;9.6e-28)|all cancers(26;9.14e-25)|Lung(45;0.000168)|LUSC - Lung squamous cell carcinoma(53;0.000199)			TGTACTCTGTCTTTCGCATCC	0.532													6	87					0	0	0.000274275	0	0
ZNF546	339327	broad.mit.edu	37	19	40521320	40521320	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr19:40521320C>T	uc002oms.2	+	7	2399	c.2143C>T	c.(2143-2145)CAC>TAC	p.H715Y	ZNF546_uc002omt.2_Missense_Mutation_p.H689Y	NM_178544	NP_848639	Q86UE3	ZN546_HUMAN	zinc finger protein 546	715	C2H2-type 18.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|breast(1)|skin(1)	3	all_cancers(60;9.55e-06)|all_lung(34;1.17e-07)|Lung NSC(34;1.41e-07)|Ovarian(47;0.0925)					TCAAAGAATTCACACTGGTGA	0.388													26	38					0	0	0.000147802	0	0
ADCK4	79934	broad.mit.edu	37	19	41198219	41198219	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr19:41198219C>T	uc002oor.2	-	15	1658	c.1356G>A	c.(1354-1356)CAG>CAA	p.Q452Q	NUMBL_uc010xvq.1_5'Flank|NUMBL_uc002oon.2_5'Flank|NUMBL_uc002ooo.2_5'Flank|NUMBL_uc010xvr.1_5'Flank|ADCK4_uc002oop.1_Silent_p.Q129Q|ADCK4_uc002ooq.1_Silent_p.Q411Q	NM_024876	NP_079152	Q96D53	ADCK4_HUMAN	aarF domain containing kinase 4 isoform a	452						integral to membrane	protein serine/threonine kinase activity				0			Lung(22;9.49e-05)|LUSC - Lung squamous cell carcinoma(20;0.000219)			CATAAGGGCCCTGGGTGGCGA	0.672													4	23					0	0	8.12818e-05	0	0
CYP2A6	1548	broad.mit.edu	37	19	41350627	41350627	+	Missense_Mutation	SNP	G	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr19:41350627G>T	uc002opl.3	-	8	1233	c.1212C>A	c.(1210-1212)TTC>TTA	p.F404L		NM_000762	NP_000753	P11509	CP2A6_HUMAN	cytochrome P450, family 2, subfamily A,	404					coumarin catabolic process|exogenous drug catabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|coumarin 7-hydroxylase activity|electron carrier activity|enzyme binding|heme binding			ovary(2)	2			LUSC - Lung squamous cell carcinoma(20;0.000219)|Lung(22;0.000959)		Chlorzoxazone(DB00356)|Diethylstilbestrol(DB00255)|Estradiol(DB00783)|Ethinyl Estradiol(DB00977)|Formoterol(DB00983)|Halothane(DB01159)|Letrozole(DB01006)|Methoxsalen(DB00553)|Metyrapone(DB01011)|Nicotine(DB00184)|Pilocarpine(DB01085)|Tolbutamide(DB01124)|Tranylcypromine(DB00752)	GGTTGGAGAAGAAACTGGGGT	0.537													19	35					7.21436e-19	9.11191e-18	0.000132079	1	0
PSG8	440533	broad.mit.edu	37	19	43269712	43269712	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr19:43269712G>A	uc002ouo.2	-	1	120	c.22C>T	c.(22-24)CCC>TCC	p.P8S	PSG3_uc002ouf.2_Intron|PSG1_uc002oug.1_Intron|PSG8_uc002oui.2_5'UTR|PSG8_uc002ouh.2_Missense_Mutation_p.P8S|PSG8_uc010ein.2_Missense_Mutation_p.P8S|PSG8_uc002ouj.3_Intron|PSG8_uc002ouk.3_Intron|PSG8_uc002oul.3_Intron|PSG8_uc002oum.3_Intron|PSG1_uc002oun.2_Intron|PSG8_uc002oup.3_Intron	NM_182707	NP_874366	Q9UQ74	PSG8_HUMAN	pregnancy specific beta-1-glycoprotein 8 isoform	8						extracellular region					0		Prostate(69;0.00899)				TGTGTGCAGGGAGGGGCTGAG	0.597													5	68					0	0	0.000274275	0	0
PSG6	5675	broad.mit.edu	37	19	43420388	43420389	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr19:43420388_43420389GG>TT	uc002ovj.1	-	2	367_368	c.315_316CC>AA	c.(313-318)TCCCTG>TCAATG	p.L106M	PSG3_uc002ouf.2_Intron|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_Intron|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Intron|PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG11_uc002ovk.1_Intron|PSG6_uc002ovf.1_Missense_Mutation_p.L106M|PSG6_uc002ovg.1_Missense_Mutation_p.L106M	NM_002782	NP_002773	Q00889	PSG6_HUMAN	pregnancy specific beta-1-glycoprotein 6 isoform	106	Ig-like V-type.				female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00899)				TGGATCAGCAGGGATGCATTGG	0.45													10	305					0	0	6.4e-05	0	0
PSG7	5676	broad.mit.edu	37	19	43430822	43430822	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr19:43430822C>T	uc002ovl.3	-	5	858	c.756G>A	c.(754-756)AGG>AGA	p.R252R	PSG3_uc002ouf.2_Intron|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_RNA|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Intron|PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG11_uc002ovk.1_Intron|PSG7_uc010xwl.1_Silent_p.R130R	NM_002783	NP_002774	Q13046	PSG7_HUMAN	pregnancy specific beta-1-glycoprotein 7	252	Ig-like C2-type 2.				female pregnancy	extracellular region					0		Prostate(69;0.00682)				CCTTATTCTCCCTGGGGTTTA	0.493													40	124					0	0	0.000680045	0	0
PSG11	5680	broad.mit.edu	37	19	43522923	43522923	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr19:43522923G>A	uc002ovm.1	-	3	815	c.708C>T	c.(706-708)CTC>CTT	p.L236L	PSG11_uc002ouw.2_Silent_p.L242L|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Intron|PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG11_uc002ovk.1_Silent_p.L242L|PSG11_uc002ovn.1_Silent_p.L242L|PSG11_uc002ovo.1_Silent_p.L114L|PSG11_uc002ovp.1_Silent_p.L114L	NM_002785	NP_002776	Q9UQ72	PSG11_HUMAN	pregnancy specific beta-1-glycoprotein 11	236					female pregnancy	extracellular region					0		Prostate(69;0.00682)				GATACTCACGGAGGAGATTCA	0.522													35	124					0	0	0.000781405	0	0
TEX101	83639	broad.mit.edu	37	19	43922076	43922077	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr19:43922076_43922077GG>TT	uc010xwo.1	+	5	633_634	c.438_439GG>TT	c.(436-441)TTGGGG>TTTTGG	p.146_147LG>FW	TEX101_uc002owk.2_Missense_Mutation_p.164_165LG>FW	NM_001130011	NP_001123483	Q9BY14	TX101_HUMAN	testis expressed 101 isoform 2	146_147						anchored to membrane|plasma membrane				ovary(1)	1		Prostate(69;0.0199)				GTGTGGCTTTGGGGACCTGTTT	0.49													8	185					0	0	6.4e-05	0	0
PHLDB3	653583	broad.mit.edu	37	19	43998878	43998878	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr19:43998878G>A	uc002own.3	-	9	1384	c.1125C>T	c.(1123-1125)CTC>CTT	p.L375L	PHLDB3_uc010eit.2_Silent_p.L79L	NM_198850	NP_942147	Q6NSJ2	PHLB3_HUMAN	pleckstrin homology-like domain, family B,	375											0		Prostate(69;0.0153)				GGACAGAAAAGAGGCAGGAAG	0.597													7	22					0	0	0.000274275	0	0
ZNF234	10780	broad.mit.edu	37	19	44661433	44661433	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr19:44661433C>T	uc002oym.2	+	6	1571	c.1264C>T	c.(1264-1266)CAC>TAC	p.H422Y	ZNF234_uc002oyl.3_Missense_Mutation_p.H422Y	NM_006630	NP_006621	Q14588	ZN234_HUMAN	zinc finger protein 234	422	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0435)				TCTGGTAGTCCACACAGGGGA	0.428													9	33					0	0	0.000274275	0	0
ZNF235	9310	broad.mit.edu	37	19	44791848	44791848	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr19:44791848G>A	uc002oza.3	-	5	1843	c.1740C>T	c.(1738-1740)TTC>TTT	p.F580F	ZNF235_uc002oyx.1_Intron|ZNF235_uc010eji.2_Intron|ZNF235_uc002ozb.3_Silent_p.F576F|ZNF235_uc010xwx.1_Silent_p.F494F	NM_004234	NP_004225	Q14590	ZN235_HUMAN	zinc finger protein 93 homolog	580	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|large_intestine(1)	3		Prostate(69;0.0352)|all_neural(266;0.116)				AAGCCTGACTGAAACCCTTAC	0.483													16	22					0	0	0.000422831	0	0
ZNF114	163071	broad.mit.edu	37	19	48789857	48789857	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr19:48789857C>T	uc002pil.1	+	6	1473	c.976C>T	c.(976-978)CAC>TAC	p.H326Y	ZNF114_uc010elv.1_Missense_Mutation_p.H326Y|ZNF114_uc002pim.1_Missense_Mutation_p.H326Y|ZNF114_uc002pin.2_Missense_Mutation_p.H292Y	NM_153608	NP_705836	Q8NC26	ZN114_HUMAN	zinc finger protein 114	326	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_epithelial(76;8.01e-05)|all_lung(116;0.000112)|Lung NSC(112;0.000192)|Prostate(7;0.0187)|all_neural(266;0.0228)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;7.56e-05)|all cancers(93;0.000113)|Epithelial(262;0.00962)|GBM - Glioblastoma multiforme(486;0.0153)		TATGAAAATTCACACTGGAGA	0.383													26	115					0	0	0.000720815	0	0
ALDH16A1	126133	broad.mit.edu	37	19	49963009	49963009	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr19:49963009C>T	uc002pnt.2	+	4	519	c.403C>T	c.(403-405)CGA>TGA	p.R135*	ALDH16A1_uc010yar.1_Nonsense_Mutation_p.R135*|ALDH16A1_uc010yas.1_5'UTR|ALDH16A1_uc010yat.1_Intron	NM_153329	NP_699160	Q8IZ83	A16A1_HUMAN	aldehyde dehydrogenase 16 family, member A1	135							oxidoreductase activity|protein binding			skin(1)	1		all_lung(116;5.39e-06)|Lung NSC(112;1.97e-05)|all_neural(266;0.0966)|Ovarian(192;0.15)		OV - Ovarian serous cystadenocarcinoma(262;0.00156)|GBM - Glioblastoma multiforme(486;0.0251)		TCGAGAGGTTCGAGACGGGGA	0.642													11	29					0	0	0.000673444	0	0
RCN3	57333	broad.mit.edu	37	19	50040354	50040354	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr19:50040354G>A	uc002poj.2	+	4	957	c.510G>A	c.(508-510)CGG>CGA	p.R170R		NM_020650	NP_065701	Q96D15	RCN3_HUMAN	reticulocalbin 3, EF-hand calcium binding domain	170	EF-hand 3.					endoplasmic reticulum lumen	calcium ion binding|protein binding			ovary(1)	1		all_lung(116;7.84e-06)|Lung NSC(112;2.8e-05)|all_neural(266;0.0966)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.00295)|GBM - Glioblastoma multiforme(134;0.0159)		GGGACGAGCGGCGTTTCCGGG	0.582													23	157					0	0	0.000720815	0	0
SCAF1	58506	broad.mit.edu	37	19	50150056	50150056	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr19:50150056C>T	uc002poq.2	+	6	571	c.447C>T	c.(445-447)CCC>CCT	p.P149P		NM_021228	NP_067051	Q9H7N4	SFR19_HUMAN	SR-related CTD-associated factor 1	149					mRNA processing|RNA splicing	nucleus	RNA binding				0		all_lung(116;1.05e-05)|Lung NSC(112;3.77e-05)|all_neural(266;0.196)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.00113)|GBM - Glioblastoma multiforme(134;0.0204)		GCCTGCTGCCCCGTCTCAGGG	0.642													6	12					0	0	0.000157383	0	0
CPT1C	126129	broad.mit.edu	37	19	50208012	50208012	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr19:50208012C>T	uc002ppj.2	+	7	944	c.739C>T	c.(739-741)CCG>TCG	p.P247S	CPT1C_uc002ppl.3_Missense_Mutation_p.P213S|CPT1C_uc002ppi.2_Missense_Mutation_p.P164S|CPT1C_uc002ppk.2_Missense_Mutation_p.P247S|CPT1C_uc010eng.2_Missense_Mutation_p.P247S|CPT1C_uc010enh.2_Missense_Mutation_p.P247S|CPT1C_uc010ybc.1_Missense_Mutation_p.P85S|CPT1C_uc010eni.1_5'Flank	NM_152359	NP_689572	Q8TCG5	CPT1C_HUMAN	carnitine palmitoyltransferase 1C isoform 2	247	Cytoplasmic (Potential).				fatty acid metabolic process	integral to membrane|mitochondrial outer membrane	carnitine O-palmitoyltransferase activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3		all_lung(116;1.05e-05)|Lung NSC(112;3.77e-05)|all_neural(266;0.107)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.0011)|GBM - Glioblastoma multiforme(134;0.00786)		CTCCCGAAATCCGCTGATGGT	0.607													9	33					0	0	6.40141e-05	0	0
TBC1D17	79735	broad.mit.edu	37	19	50387625	50387625	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr19:50387625C>T	uc002pqo.2	+	11	1394	c.1242C>T	c.(1240-1242)CTC>CTT	p.L414L	TBC1D17_uc010ybg.1_Silent_p.L381L|TBC1D17_uc002pqp.2_Silent_p.L65L|TBC1D17_uc002pqq.1_RNA|TBC1D17_uc002pqr.2_Silent_p.L65L|TBC1D17_uc002pqs.2_RNA	NM_024682	NP_078958	Q9HA65	TBC17_HUMAN	TBC1 domain family, member 17	414	Rab-GAP TBC.					intracellular	Rab GTPase activator activity				0		all_lung(116;0.000338)|Lung NSC(112;0.000446)|all_neural(266;0.107)|Ovarian(192;0.231)		GBM - Glioblastoma multiforme(134;0.0116)|OV - Ovarian serous cystadenocarcinoma(262;0.017)		ACTTCGACCTCGGTGGGTGCC	0.662													34	153					0	0	0.000781405	0	0
LRRC4B	94030	broad.mit.edu	37	19	51022237	51022237	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr19:51022237G>A	uc002pss.2	-	3	870	c.733C>T	c.(733-735)CGC>TGC	p.R245C		NM_001080457	NP_001073926	Q9NT99	LRC4B_HUMAN	leucine rich repeat containing 4B precursor	245	Extracellular (Potential).|LRR 7.					cell junction|integral to membrane|presynaptic membrane				central_nervous_system(1)|skin(1)	2		all_neural(266;0.131)		OV - Ovarian serous cystadenocarcinoma(262;0.00284)|GBM - Glioblastoma multiforme(134;0.0188)		GAGCCCGGGCGGATCAGGTCC	0.657													5	8					0	0	0.000602214	0	0
SIGLEC12	89858	broad.mit.edu	37	19	52004616	52004616	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr19:52004616C>T	uc002pwx.1	-	1	428	c.372G>A	c.(370-372)GAG>GAA	p.E124E	SIGLEC12_uc002pww.1_5'Flank|SIGLEC12_uc010eoy.1_5'UTR	NM_053003	NP_443729	Q96PQ1	SIG12_HUMAN	sialic acid binding immunoglobulin-like	124	Ig-like V-type 1.|Extracellular (Potential).				cell adhesion	integral to membrane	sugar binding			ovary(3)|skin(2)	5		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.00161)|OV - Ovarian serous cystadenocarcinoma(262;0.0102)		TATTTCCTCTCTCTACACAAA	0.478													34	67					0	0	0.000491102	0	0
VN1R4	317703	broad.mit.edu	37	19	53770583	53770583	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr19:53770583C>T	uc010ydu.1	-	1	336	c.336G>A	c.(334-336)AGG>AGA	p.R112R		NM_173857	NP_776256	Q7Z5H5	VN1R4_HUMAN	vomeronasal 1 receptor 4	112	Cytoplasmic (Potential).				response to pheromone	actin cytoskeleton|cytoplasm|integral to membrane|plasma membrane	pheromone receptor activity			ovary(2)	2				GBM - Glioblastoma multiforme(134;0.00294)		ACCTGGATTTCCTGGAGCTGA	0.498										HNSCC(26;0.072)			4	27					0	0	3.59834e-05	0	0
NLRP12	91662	broad.mit.edu	37	19	54312893	54312893	+	Missense_Mutation	SNP	C	T	T	rs139937024		TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr19:54312893C>T	uc002qch.3	-	3	2240	c.2020G>A	c.(2020-2022)GGG>AGG	p.G674R	NLRP12_uc010eqw.2_5'Flank|NLRP12_uc002qci.3_Missense_Mutation_p.G674R|NLRP12_uc002qcj.3_Missense_Mutation_p.G674R|NLRP12_uc002qck.3_RNA|NLRP12_uc010eqx.2_Missense_Mutation_p.G674R	NM_144687	NP_653288	P59046	NAL12_HUMAN	NLR family, pyrin domain containing 12 isoform	674					negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of interleukin-1 secretion|negative regulation of interleukin-6 biosynthetic process|negative regulation of protein autophosphorylation|negative regulation of Toll signaling pathway|positive regulation of inflammatory response|positive regulation of interleukin-1 beta secretion|regulation of interleukin-18 biosynthetic process|release of cytoplasmic sequestered NF-kappaB	cytoplasm	ATP binding|caspase activator activity|protein binding			ovary(4)|upper_aerodigestive_tract(2)|lung(1)	7	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.026)		CGGTCTTCCCCGTCCGCGCTG	0.617													6	24					0	0	8.12818e-05	0	0
NLRP12	91662	broad.mit.edu	37	19	54314534	54314534	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr19:54314534C>T	uc002qch.3	-	3	599	c.379G>A	c.(379-381)GAA>AAA	p.E127K	NLRP12_uc010eqw.2_5'Flank|NLRP12_uc002qci.3_Missense_Mutation_p.E127K|NLRP12_uc002qcj.3_Missense_Mutation_p.E127K|NLRP12_uc002qck.3_RNA|NLRP12_uc010eqx.2_Missense_Mutation_p.E127K	NM_144687	NP_653288	P59046	NAL12_HUMAN	NLR family, pyrin domain containing 12 isoform	127					negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of interleukin-1 secretion|negative regulation of interleukin-6 biosynthetic process|negative regulation of protein autophosphorylation|negative regulation of Toll signaling pathway|positive regulation of inflammatory response|positive regulation of interleukin-1 beta secretion|regulation of interleukin-18 biosynthetic process|release of cytoplasmic sequestered NF-kappaB	cytoplasm	ATP binding|caspase activator activity|protein binding	p.E127K(1)		ovary(4)|upper_aerodigestive_tract(2)|lung(1)	7	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.026)		CTGTAGGTTTCCTGGGGATCT	0.537													13	77					0	0	0.000308642	0	0
LILRB2	10288	broad.mit.edu	37	19	54783826	54783826	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr19:54783826G>A	uc002qfb.2	-	4	441	c.175C>T	c.(175-177)CGT>TGT	p.R59C	LILRA6_uc002qew.1_Intron|LILRB2_uc010eri.2_Missense_Mutation_p.R59C|LILRB2_uc010erj.2_RNA|LILRB2_uc002qfc.2_Missense_Mutation_p.R59C|LILRB2_uc010yet.1_Intron|LILRB2_uc010yeu.1_RNA	NM_005874	NP_005865	Q8N423	LIRB2_HUMAN	leukocyte immunoglobulin-like receptor,	59	Extracellular (Potential).|Ig-like C2-type 1.				cell surface receptor linked signaling pathway|cell-cell signaling|cellular defense response|immune response|regulation of immune response	integral to plasma membrane|membrane fraction	receptor activity			skin(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		CTATATAGACGGTACTCCTGG	0.547													28	129					0	0	0.000720815	0	0
LILRA2	11027	broad.mit.edu	37	19	55086778	55086779	+	Missense_Mutation	DNP	GG	AA	AA	rs139468214		TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr19:55086778_55086779GG>AA	uc002qgg.3	+	5	800_801	c.711_712GG>AA	c.(709-714)GGGGAG>GGAAAG	p.E238K	LILRA2_uc010ern.2_Missense_Mutation_p.E238K|LILRA2_uc002qgf.2_Missense_Mutation_p.E238K|LILRA2_uc010yfe.1_Missense_Mutation_p.E238K|LILRA2_uc010yff.1_Missense_Mutation_p.E226K|LILRA2_uc010ero.2_Missense_Mutation_p.E226K|LILRA2_uc010yfg.1_Intron	NM_001130917	NP_001124389	Q8N149	LIRA2_HUMAN	leukocyte immunoglobulin-like receptor,	238	Ig-like C2-type 3.|Extracellular (Potential).				defense response	integral to membrane	antigen binding|receptor activity			ovary(1)	1				GBM - Glioblastoma multiforme(193;0.0963)		TGGCCCCCGGGGAGAGCCTGAC	0.569													13	70					0	0	6.4e-05	0	0
LILRP2	79166	broad.mit.edu	37	19	55221523	55221523	+	RNA	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr19:55221523C>T	uc002qgs.1	+	1		c.1923C>T			LILRP2_uc002qgt.1_RNA	NR_003061				Homo sapiens leukocyte immunoglobulin-like receptor pseudogene 2 (LILRP2), non-coding RNA.												0						AGGCCAACTTCACCCTGGGCC	0.642													8	20					0	0	0.000442599	0	0
NLRP9	338321	broad.mit.edu	37	19	56243688	56243688	+	Silent	SNP	G	A	A	rs143748392		TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr19:56243688G>A	uc002qly.2	-	2	1537	c.1509C>T	c.(1507-1509)ATC>ATT	p.I503I		NM_176820	NP_789790	Q7RTR0	NALP9_HUMAN	NLR family, pyrin domain containing 9	503						cytoplasm	ATP binding	p.I503I(1)		skin(4)|ovary(2)|breast(1)	7		Colorectal(82;0.000133)|Ovarian(87;0.133)		GBM - Glioblastoma multiforme(193;0.123)		GCATGCTGACGATTTCTTCTG	0.433													56	108					0	0	0.000781405	0	0
NLRP4	147945	broad.mit.edu	37	19	56373427	56373427	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr19:56373427G>A	uc002qmd.3	+	5	2510	c.2088G>A	c.(2086-2088)TTG>TTA	p.L696L	NLRP4_uc002qmf.2_Silent_p.L621L|NLRP4_uc010etf.2_Silent_p.L527L	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	696							ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		AGCCAGACTTGAAATACCTGA	0.443													27	144					0	0	0.000720815	0	0
NLRP8	126205	broad.mit.edu	37	19	56459380	56459380	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr19:56459380G>A	uc002qmh.2	+	1	183	c.112G>A	c.(112-114)GAA>AAA	p.E38K	NLRP8_uc010etg.2_Missense_Mutation_p.E38K	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8	38	DAPIN.					cytoplasm	ATP binding			ovary(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|kidney(1)	13		Colorectal(82;0.000147)|Ovarian(87;0.17)		GBM - Glioblastoma multiforme(193;0.0695)		CTCCCCATGTGAAAATGGGGT	0.527													23	38					0	0	0.000229342	0	0
NLRP5	126206	broad.mit.edu	37	19	56515448	56515448	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr19:56515448G>A	uc002qmj.2	+	2	429	c.429G>A	c.(427-429)CGG>CGA	p.R143R	NLRP5_uc002qmi.2_Silent_p.R143R	NM_153447	NP_703148	P59047	NALP5_HUMAN	NACHT, LRR and PYD containing protein 5	143	DAPIN.					mitochondrion|nucleolus	ATP binding			ovary(3)|skin(2)|kidney(1)|central_nervous_system(1)	7		Colorectal(82;3.46e-05)|Ovarian(87;0.0481)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0326)		AGAAGGCACGGGATGACATGA	0.502													17	68					0	0	0.000295444	0	0
NLRP5	126206	broad.mit.edu	37	19	56565166	56565166	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr19:56565166G>A	uc002qmj.2	+	13	3291	c.3291G>A	c.(3289-3291)GCG>GCA	p.A1097A	NLRP5_uc002qmi.2_Silent_p.A1078A	NM_153447	NP_703148	P59047	NALP5_HUMAN	NACHT, LRR and PYD containing protein 5	1097						mitochondrion|nucleolus	ATP binding			ovary(3)|skin(2)|kidney(1)|central_nervous_system(1)	7		Colorectal(82;3.46e-05)|Ovarian(87;0.0481)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0326)		GTGTTCTGGCGAGACTCGGGT	0.607													13	53					0	0	0.00074312	0	0
USP29	57663	broad.mit.edu	37	19	57641395	57641395	+	Missense_Mutation	SNP	A	C	C			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr19:57641395A>C	uc002qny.2	+	4	1708	c.1352A>C	c.(1351-1353)AAT>ACT	p.N451T		NM_020903	NP_065954	Q9HBJ7	UBP29_HUMAN	ubiquitin specific peptidase 29	451					protein modification process|ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity	p.N451N(1)		lung(6)|ovary(2)|breast(2)|pancreas(1)	11		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		GTAGAACCTAATAATTATCTC	0.358													36	159					0	0	0.000270559	0	0
USP29	57663	broad.mit.edu	37	19	57641715	57641716	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr19:57641715_57641716GG>TT	uc002qny.2	+	4	2028_2029	c.1672_1673GG>TT	c.(1672-1674)GGG>TTG	p.G558L		NM_020903	NP_065954	Q9HBJ7	UBP29_HUMAN	ubiquitin specific peptidase 29	558					protein modification process|ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(6)|ovary(2)|breast(2)|pancreas(1)	11		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		TGCACCTGTTGGGAAATGTGAA	0.426													10	248					0	0	6.4e-05	0	0
ZNF154	7710	broad.mit.edu	37	19	58213573	58213573	+	Silent	SNP	A	G	G			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr19:58213573A>G	uc010euf.2	-	3	984	c.744T>C	c.(742-744)AGT>AGC	p.S248S	ZNF776_uc002qpx.2_Intron|ZNF154_uc002qpy.2_RNA	NM_001085384	NP_001078853	Q13106	ZN154_HUMAN	zinc finger protein 154	248	C2H2-type 6.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0257)		TCCCACATTCACTGCACTCAT	0.448													4	102					0	0	0.000602214	0	0
ZNF135	7694	broad.mit.edu	37	19	58578489	58578489	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr19:58578489C>T	uc010yhq.1	+	5	769	c.673C>T	c.(673-675)CCC>TCC	p.P225S	ZNF135_uc002qre.2_Missense_Mutation_p.P213S|ZNF135_uc002qrd.1_Missense_Mutation_p.P171S|ZNF135_uc002qrf.2_Missense_Mutation_p.P171S|ZNF135_uc002qrg.2_Missense_Mutation_p.P183S|ZNF135_uc010yhr.1_Missense_Mutation_p.P34S	NM_003436	NP_003427	B4DHH9	B4DHH9_HUMAN	zinc finger protein 135 isoform 2	225					regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0412)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0161)		AAAAGAGAAACCCTACAAATG	0.473													41	44					0	0	0.000228196	0	0
TRIB2	28951	broad.mit.edu	37	2	12863439	12863439	+	Silent	SNP	T	C	C			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr2:12863439T>C	uc002rbv.3	+	2	1760	c.324T>C	c.(322-324)TCT>TCC	p.S108S	TRIB2_uc010yjp.1_5'UTR	NM_021643	NP_067675	Q92519	TRIB2_HUMAN	tribbles homolog 2	108	Protein kinase.				negative regulation of fat cell differentiation|negative regulation of interleukin-10 biosynthetic process|negative regulation of protein kinase activity|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|regulation of MAP kinase activity	cytoplasm|cytoskeleton|nucleus	ATP binding|protein kinase activity|protein kinase inhibitor activity|transcription factor binding|ubiquitin protein ligase binding|ubiquitin-protein ligase regulator activity			stomach(1)	1	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)					TTTGCCTGTCTGCTCATAGTA	0.468													25	12					0	0	0.000878237	0	0
SMC6	79677	broad.mit.edu	37	2	17897499	17897499	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr2:17897499C>T	uc002rco.2	-	15	1675	c.1379G>A	c.(1378-1380)AGC>AAC	p.S460N	SMC6_uc010exo.2_Missense_Mutation_p.S460N|SMC6_uc002rcn.2_Missense_Mutation_p.S460N|SMC6_uc002rcp.1_Missense_Mutation_p.S486N|SMC6_uc002rcq.2_Missense_Mutation_p.S486N	NM_001142286	NP_001135758	Q96SB8	SMC6_HUMAN	SMC6 protein	460	Flexible hinge.				DNA recombination|DNA repair	chromosome|nucleus	ATP binding			breast(4)|upper_aerodigestive_tract(1)|kidney(1)	6	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					CTGATTGTAGCTCAGTGCATG	0.358													4	63					0	0	3.59834e-05	0	0
WDR35	57539	broad.mit.edu	37	2	20173356	20173356	+	Missense_Mutation	SNP	T	C	C			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr2:20173356T>C	uc002rdi.2	-	8	958	c.850A>G	c.(850-852)AAC>GAC	p.N284D	WDR35_uc002rdj.2_Missense_Mutation_p.N284D|WDR35_uc010ext.2_RNA|WDR35_uc002rdh.2_5'UTR	NM_001006657	NP_001006658	Q9P2L0	WDR35_HUMAN	WD repeat domain 35 isoform 1	284										ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TGCACAATGTTCACATCTTTG	0.443													41	28					0	0	0.000589545	0	0
APOB	338	broad.mit.edu	37	2	21227218	21227218	+	Missense_Mutation	SNP	G	C	C			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr2:21227218G>C	uc002red.2	-	28	12138	c.12010C>G	c.(12010-12012)CCA>GCA	p.P4004A		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	4004					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	CCTACGGCTGGGGAGGCTGCT	0.502													4	247					0	0	3.59834e-05	0	0
APOB	338	broad.mit.edu	37	2	21235361	21235361	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr2:21235361G>A	uc002red.2	-	26	4507	c.4379C>T	c.(4378-4380)TCC>TTC	p.S1460F		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	1460					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TGGTCCCCAGGAACTAGATGC	0.388													100	231					0	0	0.000781405	0	0
APOB	338	broad.mit.edu	37	2	21246504	21246505	+	Nonsense_Mutation	DNP	CC	AA	AA			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr2:21246504_21246505CC>AA	uc002red.2	-	17	2624_2625	c.2496_2497GG>TT	c.(2494-2499)ATGGAG>ATTTAG	p.832_833ME>I*		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	832_833					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	AAGGCATTCTCCATGAAGATGT	0.441													13	322					0	0	6.4e-05	0	0
PLB1	151056	broad.mit.edu	37	2	28812608	28812608	+	Missense_Mutation	SNP	C	G	G			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr2:28812608C>G	uc002rmb.1	+	28	1987	c.1987C>G	c.(1987-1989)CGA>GGA	p.R663G	PLB1_uc010ezj.1_Missense_Mutation_p.R652G|PLB1_uc002rmc.2_Missense_Mutation_p.R351G|PLB1_uc002rmd.1_Missense_Mutation_p.R173G	NM_153021	NP_694566	Q6P1J6	PLB1_HUMAN	phospholipase B1 precursor	663	4 X 308-326 AA approximate repeats.|2.|Extracellular (Potential).				lipid catabolic process|retinoid metabolic process|steroid metabolic process	apical plasma membrane|integral to membrane	lysophospholipase activity|phospholipase A2 activity|retinyl-palmitate esterase activity			ovary(4)|large_intestine(2)|skin(2)|breast(1)	9	Acute lymphoblastic leukemia(172;0.155)					GTCTCACTCCCGAGCAGCCAG	0.498													3	68					0	0	0.000602214	0	0
CLIP4	79745	broad.mit.edu	37	2	29386703	29386703	+	Missense_Mutation	SNP	G	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr2:29386703G>T	uc002rmv.2	+	13	1780	c.1541G>T	c.(1540-1542)TGG>TTG	p.W514L	CLIP4_uc002rmu.2_Missense_Mutation_p.W514L|CLIP4_uc002rmw.2_RNA	NM_024692	NP_078968	Q8N3C7	CLIP4_HUMAN	CAP-GLY domain containing linker protein family,	514	CAP-Gly 2.									ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)					CTAGGATATTGGTATGGTATA	0.363													7	86					0.000673444	0.00829425	0.000673444	1	0
XDH	7498	broad.mit.edu	37	2	31595158	31595158	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr2:31595158G>A	uc002rnv.1	-	17	1871	c.1792C>T	c.(1792-1794)CCT>TCT	p.P598S		NM_000379	NP_000370	P47989	XDH_HUMAN	xanthine dehydrogenase	598					purine nucleotide catabolic process|xanthine catabolic process	cytosol|extracellular region|peroxisome	2 iron, 2 sulfur cluster binding|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|molybdopterin cofactor binding|protein homodimerization activity|xanthine dehydrogenase activity|xanthine oxidase activity			skin(4)|breast(2)|ovary(1)|central_nervous_system(1)	8	Acute lymphoblastic leukemia(172;0.155)				Allopurinol(DB00437)|Carvedilol(DB01136)|Daunorubicin(DB00694)|Deferoxamine(DB00746)|Desflurane(DB01189)|Menadione(DB00170)|Mercaptopurine(DB01033)|Methotrexate(DB00563)|NADH(DB00157)|Nitrofurazone(DB00336)|Papaverine(DB01113)|Procarbazine(DB01168)|Pyrazinamide(DB00339)|Rasburicase(DB00049)|Spermine(DB00127)|Trifluoperazine(DB00831)|Vitamin E(DB00163)	TCGTAGCGAGGAATGTCGTCA	0.642													29	92					0	0	0.000184323	0	0
XDH	7498	broad.mit.edu	37	2	31610747	31610747	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr2:31610747G>A	uc002rnv.1	-	8	660	c.581C>T	c.(580-582)TCT>TTT	p.S194F		NM_000379	NP_000370	P47989	XDH_HUMAN	xanthine dehydrogenase	194					purine nucleotide catabolic process|xanthine catabolic process	cytosol|extracellular region|peroxisome	2 iron, 2 sulfur cluster binding|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|molybdopterin cofactor binding|protein homodimerization activity|xanthine dehydrogenase activity|xanthine oxidase activity			skin(4)|breast(2)|ovary(1)|central_nervous_system(1)	8	Acute lymphoblastic leukemia(172;0.155)				Allopurinol(DB00437)|Carvedilol(DB01136)|Daunorubicin(DB00694)|Deferoxamine(DB00746)|Desflurane(DB01189)|Menadione(DB00170)|Mercaptopurine(DB01033)|Methotrexate(DB00563)|NADH(DB00157)|Nitrofurazone(DB00336)|Papaverine(DB01113)|Procarbazine(DB01168)|Pyrazinamide(DB00339)|Rasburicase(DB00049)|Spermine(DB00127)|Trifluoperazine(DB00831)|Vitamin E(DB00163)	TTTGAATAAAGATGGCGAGAG	0.532													8	4					0	0	0.000673444	0	0
NLRC4	58484	broad.mit.edu	37	2	32476336	32476336	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr2:32476336G>A	uc002roi.2	-	4	843	c.597C>T	c.(595-597)TTC>TTT	p.F199F	NLRC4_uc002roj.1_Silent_p.F199F|NLRC4_uc010ezt.1_Intron	NM_021209	NP_067032	Q9NPP4	NLRC4_HUMAN	caspase recruitment domain protein 12	199	NACHT.				activation of caspase activity|defense response to bacterium|detection of bacterium|interleukin-1 beta secretion|positive regulation of apoptosis	cytoplasm	ATP binding|magnesium ion binding|protein homodimerization activity			ovary(3)|large_intestine(1)|lung(1)|skin(1)	6	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.208)					GGAAGAAGACGAATTTGAACT	0.517													16	36					0	0	0.000422831	0	0
BIRC6	57448	broad.mit.edu	37	2	32712717	32712717	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr2:32712717C>T	uc010ezu.2	+	41	7951	c.7817C>T	c.(7816-7818)TCA>TTA	p.S2606L		NM_016252	NP_057336	Q9NR09	BIRC6_HUMAN	baculoviral IAP repeat-containing 6	2606					anti-apoptosis|apoptosis	intracellular	acid-amino acid ligase activity|cysteine-type endopeptidase inhibitor activity|protein binding			ovary(5)|skin(4)|lung(2)|central_nervous_system(1)|breast(1)|pancreas(1)	14	Acute lymphoblastic leukemia(172;0.155)					TTTTCAGTATCACAGTCTCCC	0.318													18	61					0	0	0.000295444	0	0
SOS1	6654	broad.mit.edu	37	2	39294888	39294889	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr2:39294888_39294889CC>AA	uc002rrk.3	-	2	134_135	c.93_94GG>TT	c.(91-96)CAGGGG>CATTGG	p.31_32QG>HW	SOS1_uc010ynr.1_RNA	NM_005633	NP_005624	Q07889	SOS1_HUMAN	son of sevenless homolog 1	31_32					apoptosis|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|induction of apoptosis by extracellular signals|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	cytosol	DNA binding|protein binding|Rho GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			ovary(4)|breast(3)|lung(2)|central_nervous_system(1)	10		all_hematologic(82;0.21)				TGAACTTGCCCCTGGACCTATA	0.312									Noonan_syndrome				9	185					0	0	6.4e-05	0	0
THADA	63892	broad.mit.edu	37	2	43625235	43625235	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr2:43625235G>A	uc002rsw.3	-	29	4454	c.4102C>T	c.(4102-4104)CGT>TGT	p.R1368C	THADA_uc010far.2_Missense_Mutation_p.R563C|THADA_uc002rsx.3_Missense_Mutation_p.R1368C|THADA_uc002rsy.3_RNA|THADA_uc010fas.1_RNA|THADA_uc002rsz.2_Missense_Mutation_p.R1077C|THADA_uc010fat.1_Missense_Mutation_p.R515C	NM_001083953	NP_001077422	Q6YHU6	THADA_HUMAN	thyroid adenoma associated	1368							binding			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(82;0.00361)|all_hematologic(82;0.00837)				ACCAAGGCACGAGCTGCCATT	0.468													80	179					0	0	0.000781405	0	0
THADA	63892	broad.mit.edu	37	2	43808935	43808936	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr2:43808935_43808936GG>TT	uc002rsw.3	-	8	1017_1018	c.665_666CC>AA	c.(664-666)CCC>CAA	p.P222Q	THADA_uc002rsx.3_Missense_Mutation_p.P222Q|THADA_uc002rsy.3_RNA|THADA_uc002rsz.2_5'UTR|THADA_uc002rta.2_5'UTR|THADA_uc002rtb.1_Missense_Mutation_p.P222Q|THADA_uc002rtc.3_Missense_Mutation_p.P222Q|THADA_uc002rtd.2_Missense_Mutation_p.P222Q	NM_001083953	NP_001077422	Q6YHU6	THADA_HUMAN	thyroid adenoma associated	222							binding			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(82;0.00361)|all_hematologic(82;0.00837)				TTTGCCATATGGGAGAATCGGA	0.337													20	570					0	0	6.4e-05	0	0
PLEKHH2	130271	broad.mit.edu	37	2	43931179	43931180	+	Nonsense_Mutation	DNP	GG	TT	TT			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr2:43931179_43931180GG>TT	uc010yny.1	+	9	1793_1794	c.1710_1711GG>TT	c.(1708-1713)ATGGAG>ATTTAG	p.570_571ME>I*	PLEKHH2_uc002rte.3_Nonsense_Mutation_p.570_571ME>I*|PLEKHH2_uc002rtf.3_Nonsense_Mutation_p.569_570ME>I*	NM_172069	NP_742066	Q8IVE3	PKHH2_HUMAN	pleckstrin homology domain containing, family H	570_571						cytoplasm|cytoskeleton|integral to membrane	binding			skin(2)|central_nervous_system(1)	3		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)				CCTTCAATATGGAGAGTGTTAA	0.233													13	503					0	0	6.4e-05	0	0
PLEKHH2	130271	broad.mit.edu	37	2	43933532	43933533	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr2:43933532_43933533CC>AA	uc010yny.1	+	10	1881_1882	c.1798_1799CC>AA	c.(1798-1800)CCA>AAA	p.P600K	PLEKHH2_uc002rte.3_Missense_Mutation_p.P600K|PLEKHH2_uc002rtf.3_Missense_Mutation_p.P599K	NM_172069	NP_742066	Q8IVE3	PKHH2_HUMAN	pleckstrin homology domain containing, family H	600						cytoplasm|cytoskeleton|integral to membrane	binding			skin(2)|central_nervous_system(1)	3		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)				CATGACCACCCCAGTGTATACA	0.361													11	442					0	0	6.4e-05	0	0
STON1-GTF2A1L	286749	broad.mit.edu	37	2	48807936	48807936	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr2:48807936C>T	uc010yol.1	+	1	211	c.164C>T	c.(163-165)TCC>TTC	p.S55F	STON1_uc002rwo.3_Missense_Mutation_p.S55F|STON1_uc010fbm.2_Missense_Mutation_p.S55F|STON1-GTF2A1L_uc002rwp.1_Missense_Mutation_p.S55F|STON1_uc002rwr.2_RNA|STON1_uc002rwq.2_Missense_Mutation_p.S55F	NM_006873	NP_006864	B7ZL16	B7ZL16_HUMAN	stonin 1	55					endocytosis|intracellular protein transport|transcription initiation from RNA polymerase II promoter	clathrin adaptor complex|transcription factor TFIIA complex				ovary(3)|pancreas(1)|skin(1)	5		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.176)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)			AGTGGATCTTCCTCCACCAGC	0.468													16	37					0	0	0.000566183	0	0
STON1-GTF2A1L	286749	broad.mit.edu	37	2	48807961	48807961	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr2:48807961C>T	uc010yol.1	+	1	236	c.189C>T	c.(187-189)TCC>TCT	p.S63S	STON1_uc002rwo.3_Silent_p.S63S|STON1_uc010fbm.2_Silent_p.S63S|STON1-GTF2A1L_uc002rwp.1_Silent_p.S63S|STON1_uc002rwr.2_RNA|STON1_uc002rwq.2_Silent_p.S63S	NM_006873	NP_006864	B7ZL16	B7ZL16_HUMAN	stonin 1	63					endocytosis|intracellular protein transport|transcription initiation from RNA polymerase II promoter	clathrin adaptor complex|transcription factor TFIIA complex				ovary(3)|pancreas(1)|skin(1)	5		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.176)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)			CTCCTCTCTCCTCCCCCATTG	0.493													25	52					0	0	0.000878237	0	0
C2orf65	130951	broad.mit.edu	37	2	74834339	74834339	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr2:74834339C>T	uc002smy.2	-	4	555	c.438G>A	c.(436-438)CTG>CTA	p.L146L	C2orf65_uc010ysa.1_Silent_p.L146L|C2orf65_uc002smz.2_Silent_p.L146L	NM_138804	NP_620159	Q8TC57	CB065_HUMAN	hypothetical protein LOC130951	146					chromatin assembly|female gamete generation|RNA processing|spermatogenesis	integral to membrane				ovary(1)|pancreas(1)	2						GCTGAGAAGTCAGAATAGTAA	0.433													23	54					0	0	0.000878237	0	0
EIF2AK3	9451	broad.mit.edu	37	2	88895128	88895128	+	Missense_Mutation	SNP	C	G	G			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr2:88895128C>G	uc002stc.3	-	3	694	c.492G>C	c.(490-492)TGG>TGC	p.W164C		NM_004836	NP_004827	Q9NZJ5	E2AK3_HUMAN	eukaryotic translation initiation factor 2-alpha	164	Lumenal (Potential).				activation of caspase activity|bone mineralization|calcium-mediated signaling|chondrocyte development|endocrine pancreas development|endoplasmic reticulum organization|endoplasmic reticulum unfolded protein response|ER overload response|insulin secretion|insulin-like growth factor receptor signaling pathway|negative regulation of myelination|negative regulation of translational initiation in response to stress|protein autophosphorylation|protein homooligomerization	endoplasmic reticulum membrane|integral to membrane	ATP binding|eukaryotic translation initiation factor 2alpha kinase activity|identical protein binding			ovary(3)	3						GGTCTTGGTCCCACTGGAAGA	0.378													4	207					0	0	0.00024832	0	0
Unknown	0	broad.mit.edu	37	2	90249191	90249191	+	RNA	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr2:90249191G>A	uc010fhm.2	+	28		c.3734G>A								Parts of antibodies, mostly variable regions.																		GGGCCAGTCAGGGCATTAGCA	0.498													21	57					0	0	0.000229342	0	0
SLC9A2	6549	broad.mit.edu	37	2	103324903	103324903	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr2:103324903G>A	uc002tca.2	+	12	2536	c.2394G>A	c.(2392-2394)TCG>TCA	p.S798S		NM_003048	NP_003039	Q9UBY0	SL9A2_HUMAN	solute carrier family 9 (sodium/hydrogen	798	Cytoplasmic (Potential).					integral to membrane|plasma membrane	sodium:hydrogen antiporter activity			central_nervous_system(3)|skin(3)|breast(2)	8						GGAGGGCATCGGAACCTGGAA	0.567													12	56					0	0	0.000219431	0	0
SULT1C3	442038	broad.mit.edu	37	2	108869811	108869811	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr2:108869811C>T	uc010ywo.1	+	3	312	c.312C>T	c.(310-312)TTC>TTT	p.F104F		NM_001008743	NP_001008743	Q6IMI6	ST1C3_HUMAN	sulfotransferase family, cytosolic, 1C, member	104						cytoplasm	alcohol sulfotransferase activity			skin(1)	1						ATTTGGAGTTCGTTCTTGAAA	0.358													4	14					0	0	0.000602214	0	0
PSD4	23550	broad.mit.edu	37	2	113942615	113942615	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr2:113942615G>A	uc002tjc.2	+	3	1321	c.1138G>A	c.(1138-1140)GAT>AAT	p.D380N	PSD4_uc002tjd.2_5'UTR|PSD4_uc002tje.2_Missense_Mutation_p.D379N|PSD4_uc002tjf.2_5'UTR	NM_012455	NP_036587	Q8NDX1	PSD4_HUMAN	pleckstrin and Sec7 domain containing 4	380					regulation of ARF protein signal transduction	cytoplasm|plasma membrane	ARF guanyl-nucleotide exchange factor activity			ovary(2)	2						tgtcggatctgatcttggccc	0.124													25	55					0	0	0.00047179	0	0
CCDC93	54520	broad.mit.edu	37	2	118732778	118732778	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr2:118732778G>A	uc002tlj.2	-	9	862	c.736C>T	c.(736-738)CGA>TGA	p.R246*	CCDC93_uc010fld.1_Nonsense_Mutation_p.R246*	NM_019044	NP_061917	Q567U6	CCD93_HUMAN	coiled-coil domain containing 93	246	Potential.									large_intestine(1)|ovary(1)	2						TCAGCTGCTCGAAGCTCATCT	0.502													39	117					0	0	0.000781405	0	0
POTEE	445582	broad.mit.edu	37	2	132021015	132021015	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr2:132021015G>A	uc002tsn.2	+	15	2039	c.1987G>A	c.(1987-1989)GAC>AAC	p.D663N	PLEKHB2_uc002tsh.2_Intron|POTEE_uc002tsk.2_Missense_Mutation_p.D263N|POTEE_uc002tsl.2_Missense_Mutation_p.D245N|POTEE_uc010fmy.1_Missense_Mutation_p.D127N	NM_001083538	NP_001077007	Q6S8J3	POTEE_HUMAN	protein expressed in prostate, ovary, testis,	663	Potential.						ATP binding				0						ACTGGAGCTAGACACAATGAA	0.338													8	26					0	0	0.000219431	0	0
LRP1B	53353	broad.mit.edu	37	2	141259425	141259425	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr2:141259425G>A	uc002tvj.1	-	55	9653	c.8681C>T	c.(8680-8682)TCA>TTA	p.S2894L		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	2894	Extracellular (Potential).|LDL-receptor class A 20.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		CATAAAAAATGAACTGTTGCA	0.373										TSP Lung(27;0.18)			5	12					0	0	8.12818e-05	0	0
MBD5	55777	broad.mit.edu	37	2	149247902	149247902	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr2:149247902C>T	uc002twm.3	+	12	4990	c.4002C>T	c.(4000-4002)ATC>ATT	p.I1334I	MBD5_uc010zbs.1_Intron|MBD5_uc010fns.2_Silent_p.I1334I|MBD5_uc002two.2_Silent_p.I592I|MBD5_uc002twp.2_Silent_p.I384I	NM_018328	NP_060798	Q9P267	MBD5_HUMAN	methyl-CpG binding domain protein 5	1334						chromosome|nucleus	chromatin binding|DNA binding			skin(3)|ovary(2)	5				BRCA - Breast invasive adenocarcinoma(221;0.0569)		AAGACTACATCCATTACAATG	0.443													13	26					0	0	0.000151284	0	0
RIF1	55183	broad.mit.edu	37	2	152300166	152300166	+	Silent	SNP	G	A	A	rs140493456	byFrequency	TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr2:152300166G>A	uc002txm.2	+	18	2059	c.1929G>A	c.(1927-1929)GAG>GAA	p.E643E	RIF1_uc002txl.2_Silent_p.E643E|RIF1_uc010fnv.1_Silent_p.E607E|RIF1_uc002txn.2_Silent_p.E643E|RIF1_uc002txo.2_Silent_p.E643E	NM_018151	NP_060621	Q5UIP0	RIF1_HUMAN	RAP1 interacting factor 1	643					cell cycle|response to DNA damage stimulus	chromosome, telomeric region|cytoplasm|nucleus|spindle	binding			ovary(5)|breast(4)|skin(3)|lung(2)|kidney(1)	15				BRCA - Breast invasive adenocarcinoma(221;0.0429)		AAAATAAGGAGCATCTCTGGA	0.348													91	60					0	0	0.000781405	0	0
RIF1	55183	broad.mit.edu	37	2	152319852	152319852	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr2:152319852C>T	uc002txm.2	+	30	3948	c.3818C>T	c.(3817-3819)TCA>TTA	p.S1273L	RIF1_uc002txl.2_Missense_Mutation_p.S1273L|RIF1_uc002txn.2_Missense_Mutation_p.S1273L|RIF1_uc002txo.2_Missense_Mutation_p.S1273L|RIF1_uc002txp.2_RNA	NM_018151	NP_060621	Q5UIP0	RIF1_HUMAN	RAP1 interacting factor 1	1273					cell cycle|response to DNA damage stimulus	chromosome, telomeric region|cytoplasm|nucleus|spindle	binding			ovary(5)|breast(4)|skin(3)|lung(2)|kidney(1)	15				BRCA - Breast invasive adenocarcinoma(221;0.0429)		GGGACTTTTTCAAAATCTGAT	0.343													45	123					0	0	0.000781405	0	0
NEB	4703	broad.mit.edu	37	2	152404847	152404847	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr2:152404847C>T	uc010fnx.2	-	103	15220	c.15029G>A	c.(15028-15030)CGG>CAG	p.R5010Q	NEB_uc002txr.2_Missense_Mutation_p.R1433Q	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	5010	Nebulin 137.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		GTTGACTCTCCGGACGTGGAC	0.423													40	32					0	0	0.000589545	0	0
SCN1A	6323	broad.mit.edu	37	2	166848514	166848514	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr2:166848514C>T	uc010zcz.1	-	26	5256	c.5238G>A	c.(5236-5238)GGG>GGA	p.G1746G		NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	1757	IV.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	CAGATGGGTTCCCACAGTCTC	0.468													22	16					0	0	0.00047179	0	0
SCN1A	6323	broad.mit.edu	37	2	166848898	166848898	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr2:166848898G>A	uc010zcz.1	-	26	4872	c.4854C>T	c.(4852-4854)TTC>TTT	p.F1618F		NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	1629	IV.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	TAGGGGACACGAAATACTTTT	0.433													21	15					0	0	0.000586117	0	0
XIRP2	129446	broad.mit.edu	37	2	168099458	168099458	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr2:168099458G>A	uc002udx.2	+	8	1574	c.1556G>A	c.(1555-1557)AGT>AAT	p.S519N	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.S344N|XIRP2_uc010fpq.2_Missense_Mutation_p.S297N|XIRP2_uc010fpr.2_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	344					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						GATTATATCAGTGAAGTTTCT	0.328													4	18					0	0	0.000602214	0	0
RAPGEF4	11069	broad.mit.edu	37	2	173891985	173891986	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr2:173891985_173891986CC>AA	uc002uhv.3	+	25	2743_2744	c.2556_2557CC>AA	c.(2554-2559)GCCCAC>GCAAAC	p.H853N	RAPGEF4_uc002uhw.3_Missense_Mutation_p.H709N	NM_007023	NP_008954	Q8WZA2	RPGF4_HUMAN	Rap guanine nucleotide exchange factor (GEF) 4	853	Ras-GEF.				blood coagulation|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|regulation of insulin secretion|regulation of protein phosphorylation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cAMP-dependent protein kinase complex|membrane fraction|plasma membrane	cAMP binding|cAMP-dependent protein kinase regulator activity|Ras GTPase binding|Ras guanyl-nucleotide exchange factor activity			large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.194)			AGATAGCAGCCCAGTAAGTATA	0.342													6	73					0	0	6.4e-05	0	0
CHN1	1123	broad.mit.edu	37	2	175673691	175673692	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr2:175673691_175673692CC>AA	uc002uji.2	-	11	1573_1574	c.1043_1044GG>TT	c.(1042-1044)AGG>ATT	p.R348I	CHN1_uc010zeq.1_Missense_Mutation_p.R322I|CHN1_uc002ujj.2_Missense_Mutation_p.R123I|CHN1_uc002ujg.2_Missense_Mutation_p.R223I	NM_001822	NP_001813	P15882	CHIN_HUMAN	chimerin (chimaerin) 1 isoform a	348	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|metal ion binding|SH3/SH2 adaptor activity			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.226)			TTGGCAAATCCCTGAAGTACAG	0.361			T	TAF15	extraskeletal myxoid chondrosarcoma								8	136					0	0	6.4e-05	0	0
TTN	7273	broad.mit.edu	37	2	179596099	179596099	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr2:179596099C>T	uc010zfg.1	-	56	13886	c.13662G>A	c.(13660-13662)GGG>GGA	p.G4554G	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.G1215G	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	5481							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGACATATTTCCCATCATGCT	0.408													28	63					0	0	0.000184323	0	0
TTN	7273	broad.mit.edu	37	2	179611340	179611340	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr2:179611340C>T	uc002unb.2	-	46	16011	c.15787G>A	c.(15787-15789)GAA>AAA	p.E5263K	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTCTTTGCTTCCCCTATGATG	0.423													8	9					0	0	0.000157383	0	0
TTN	7273	broad.mit.edu	37	2	179616730	179616730	+	Missense_Mutation	SNP	C	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr2:179616730C>A	uc002unb.2	-	46	10621	c.10397G>T	c.(10396-10398)AGG>ATG	p.R3466M	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ACGTGTATCCCTTTCTGAATG	0.353													15	42					2.32078e-09	2.90475e-08	0.000308642	1	0
SSFA2	6744	broad.mit.edu	37	2	182780931	182780931	+	Missense_Mutation	SNP	A	G	G			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr2:182780931A>G	uc002uoi.2	+	11	2886	c.2564A>G	c.(2563-2565)GAA>GGA	p.E855G	SSFA2_uc002uoh.2_Missense_Mutation_p.E855G|SSFA2_uc002uoj.2_Missense_Mutation_p.E855G|SSFA2_uc002uok.2_RNA|SSFA2_uc010zfo.1_Missense_Mutation_p.E702G|SSFA2_uc002uol.2_Missense_Mutation_p.E702G|SSFA2_uc002uom.2_Missense_Mutation_p.E323G	NM_001130445	NP_001123917	P28290	SSFA2_HUMAN	sperm specific antigen 2 isoform 1	855						cytoplasm|plasma membrane	actin binding			breast(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0856)			GAGTGGCAAGAAAGGCCCCTG	0.527													14	35					0	0	0.000422831	0	0
PDE1A	5136	broad.mit.edu	37	2	183104841	183104841	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr2:183104841C>T	uc002uos.2	-	4	478	c.394G>A	c.(394-396)GAA>AAA	p.E132K	PDE1A_uc010zfp.1_Missense_Mutation_p.E28K|PDE1A_uc002uoq.1_Missense_Mutation_p.E132K|PDE1A_uc010zfq.1_Missense_Mutation_p.E132K|PDE1A_uc002uor.2_Missense_Mutation_p.E116K|PDE1A_uc002uou.2_Missense_Mutation_p.E98K	NM_001003683	NP_001003683	P54750	PDE1A_HUMAN	phosphodiesterase 1A isoform 2	132					activation of phospholipase C activity|nerve growth factor receptor signaling pathway|platelet activation	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(2)|ovary(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.061)			ACTTACCTTTCCACAAAAATT	0.363													33	80					0	0	0.000953801	0	0
ZSWIM2	151112	broad.mit.edu	37	2	187692907	187692907	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr2:187692907C>T	uc002upu.1	-	9	1746	c.1706G>A	c.(1705-1707)AGA>AAA	p.R569K		NM_182521	NP_872327	Q8NEG5	ZSWM2_HUMAN	zinc finger, SWIM domain containing 2	569					apoptosis		zinc ion binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.164)			TAAAGTTGATCTCTTGTTGTC	0.368													5	9					0	0	0.000602214	0	0
DNAH7	56171	broad.mit.edu	37	2	196851789	196851789	+	Splice_Site	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr2:196851789C>T	uc002utj.3	-	14	1855	c.1754_splice	c.e14+1	p.R585_splice		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7						ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						CACATAAATACCTTGTATTTA	0.343													47	42					0	0	0.000781405	0	0
HSPD1	3329	broad.mit.edu	37	2	198363476	198363476	+	Missense_Mutation	SNP	C	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr2:198363476C>A	uc002uui.2	-	2	234	c.97G>T	c.(97-99)GGT>TGT	p.G33C	HSPD1_uc002uuj.2_Missense_Mutation_p.G33C|HSPD1_uc010zgx.1_Missense_Mutation_p.G33C|HSPD1_uc010fsm.2_5'UTR|HSPD1_uc002uuk.2_Missense_Mutation_p.G33C|HSPD1_uc010zgy.1_Missense_Mutation_p.G33C|HSPE1_uc002uul.2_5'Flank	NM_002156	NP_002147	P10809	CH60_HUMAN	chaperonin	33					'de novo' protein folding|activation of caspase activity|B cell cytokine production|B cell proliferation|chaperone-mediated protein complex assembly|interspecies interaction between organisms|isotype switching to IgG isotypes|MyD88-dependent toll-like receptor signaling pathway|negative regulation of apoptosis|positive regulation of apoptosis|positive regulation of interferon-alpha production|positive regulation of interferon-gamma production|positive regulation of interleukin-10 production|positive regulation of interleukin-12 production|positive regulation of interleukin-6 production|positive regulation of macrophage activation|positive regulation of T cell activation|positive regulation of T cell mediated immune response to tumor cell|protein maturation|protein refolding|protein stabilization|response to unfolded protein|T cell activation	cell surface|coated pit|coated vesicle|cytosol|early endosome|extracellular space|lipopolysaccharide receptor complex|mitochondrial inner membrane|mitochondrial matrix|stored secretory granule	ATP binding|ATPase activity|cell surface binding|chaperone binding|DNA replication origin binding|lipopolysaccharide binding|p53 binding|single-stranded DNA binding				0			Epithelial(96;0.225)			GCATCTGCACCAAATTTTACA	0.478													7	110					0.000673444	0.00829425	0.000673444	1	0
ALS2CR8	79800	broad.mit.edu	37	2	203831820	203831821	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr2:203831820_203831821CG>AT	uc002uzo.2	+	9	1232_1233	c.952_953CG>AT	c.(952-954)CGG>ATG	p.R318M	ALS2CR8_uc010zhy.1_3'UTR|ALS2CR8_uc010zhz.1_RNA|ALS2CR8_uc010ftu.1_RNA|ALS2CR8_uc010zia.1_Missense_Mutation_p.R242M|ALS2CR8_uc010zib.1_Missense_Mutation_p.R242M|ALS2CR8_uc010zic.1_Missense_Mutation_p.R230M|ALS2CR8_uc002uzp.2_Missense_Mutation_p.R318M	NM_001104586	NP_001098056	Q8N187	AL2S8_HUMAN	amyotrophic lateral sclerosis 2 (juvenile)	318										large_intestine(1)|ovary(1)	2						TTGTCCAGCTCGGTAAGCTTTA	0.342													8	269					0	0	6.4e-05	0	0
NBEAL1	65065	broad.mit.edu	37	2	203990780	203990781	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr2:203990780_203990781CC>AA	uc002uzt.3	+	20	3195_3196	c.2862_2863CC>AA	c.(2860-2865)TCCCAT>TCAAAT	p.H955N		NM_001114132	NP_001107604	Q6ZS30	NBEL1_HUMAN	neurobeachin-like 1 isoform 3	955							binding			ovary(1)|skin(1)	2						TTATTCACTCCCATGGAGTTGC	0.381													11	412					0	0	6.4e-05	0	0
NBEAL1	65065	broad.mit.edu	37	2	204039984	204039985	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr2:204039984_204039985CC>AA	uc002uzt.3	+	41	6684_6685	c.6351_6352CC>AA	c.(6349-6354)ACCCTC>ACAATC	p.L2118I	NBEAL1_uc002uzs.3_Missense_Mutation_p.L828I	NM_001114132	NP_001107604	Q6ZS30	NBEL1_HUMAN	neurobeachin-like 1 isoform 3	2118	BEACH.						binding			ovary(1)|skin(1)	2						CGTTCACCACCCTCCACATCCA	0.391													10	232					0	0	6.4e-05	0	0
MAP2	4133	broad.mit.edu	37	2	210518038	210518038	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr2:210518038C>T	uc002vde.1	+	4	392	c.144C>T	c.(142-144)TTC>TTT	p.F48F	MAP2_uc002vdc.1_Silent_p.F48F|MAP2_uc002vdd.1_Silent_p.F48F|MAP2_uc002vdf.1_Silent_p.F48F|MAP2_uc002vdg.1_Silent_p.F48F|MAP2_uc002vdh.1_Silent_p.F48F|MAP2_uc002vdi.1_Silent_p.F48F	NM_002374	NP_002365	P11137	MAP2_HUMAN	microtubule-associated protein 2 isoform 1	48					central nervous system neuron development|dendrite morphogenesis|negative regulation of microtubule depolymerization	cytoplasm|microtubule|microtubule associated complex	beta-dystroglycan binding|calmodulin binding|structural molecule activity			ovary(9)|upper_aerodigestive_tract(2)|large_intestine(2)|pancreas(2)|central_nervous_system(1)|skin(1)	17		Hepatocellular(293;0.137)|Lung NSC(271;0.163)|Renal(323;0.202)		UCEC - Uterine corpus endometrioid carcinoma (47;6.64e-05)|Epithelial(149;3.12e-100)|all cancers(144;6.88e-91)|Lung(261;0.0624)|LUSC - Lung squamous cell carcinoma(261;0.0662)|STAD - Stomach adenocarcinoma(1183;0.18)	Estramustine(DB01196)	CCAATGGATTCCCATACAGGG	0.537													8	11					0	0	0.000442599	0	0
DOCK10	55619	broad.mit.edu	37	2	225666651	225666651	+	Missense_Mutation	SNP	A	C	C			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr2:225666651A>C	uc010fwz.1	-	40	4614	c.4375T>G	c.(4375-4377)TTA>GTA	p.L1459V	DOCK10_uc002vob.2_Missense_Mutation_p.L1453V|DOCK10_uc002voa.2_Missense_Mutation_p.L115V|DOCK10_uc002voc.2_Missense_Mutation_p.L313V	NM_014689	NP_055504	Q96BY6	DOC10_HUMAN	dedicator of cytokinesis 10	1459							GTP binding			ovary(2)	2		Renal(207;0.0113)|all_lung(227;0.0486)|Lung NSC(271;0.0653)|all_hematologic(139;0.14)		Epithelial(121;2.37e-10)|all cancers(144;2.26e-07)|Lung(261;0.0143)|LUSC - Lung squamous cell carcinoma(224;0.0178)		GTATTGTCTAACATCTGTAAG	0.383													25	33					0	0	0.000878237	0	0
SP140L	93349	broad.mit.edu	37	2	231236359	231236359	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr2:231236359G>A	uc010fxm.1	+	7	721	c.630G>A	c.(628-630)AGG>AGA	p.R210R	SP140L_uc010fxn.1_Silent_p.R123R|SP140L_uc010fxo.1_Silent_p.R17R	NM_138402	NP_612411	Q9H930	LY10L_HUMAN	SP140 nuclear body protein-like	210						nucleus	DNA binding|metal ion binding			central_nervous_system(1)	1						AACCCAAGAGGAAAAGAAGTA	0.279													13	39					0	0	0.000219431	0	0
SAG	6295	broad.mit.edu	37	2	234255480	234255480	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr2:234255480G>A	uc002vuh.2	+	16	1528	c.1140G>A	c.(1138-1140)GAG>GAA	p.E380E	SAG_uc010zmq.1_3'UTR	NM_000541	NP_000532	P10523	ARRS_HUMAN	S-arrestin	380					rhodopsin mediated phototransduction|rhodopsin mediated signaling pathway		protein phosphatase inhibitor activity			ovary(1)	1		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.018)|Acute lymphoblastic leukemia(138;0.0327)|Lung NSC(271;0.054)		Epithelial(121;2.86e-17)|BRCA - Breast invasive adenocarcinoma(100;0.00037)|LUSC - Lung squamous cell carcinoma(224;0.00608)|Lung(119;0.00714)|GBM - Glioblastoma multiforme(43;0.207)		TAGTTTTTGAGGAGTTTGCTC	0.418													6	29					0	0	8.12818e-05	0	0
UGT1A7	54577	broad.mit.edu	37	2	234591101	234591101	+	Missense_Mutation	SNP	T	G	G			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr2:234591101T>G	uc002vut.2	+	1	518	c.518T>G	c.(517-519)TTT>TGT	p.F173C	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Intron|UGT1A9_uc002vus.2_Intron|UGT1A7_uc010zmx.1_Missense_Mutation_p.F173C	NM_019077	NP_061950	Q9HAW7	UD17_HUMAN	UDP glycosyltransferase 1 family, polypeptide A7	173					drug metabolic process|negative regulation of fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	drug binding|enzyme inhibitor activity|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity|protein kinase C binding|retinoic acid binding			ovary(1)	1		Breast(86;0.000765)|all_lung(227;0.00267)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0328)|Lung NSC(271;0.0457)|Lung SC(224;0.128)		Epithelial(121;8.93e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000412)|Lung(119;0.00333)|LUSC - Lung squamous cell carcinoma(224;0.00746)		AGGGGAATATTTTGCCACTAT	0.473													3	94					0	0	6.4e-05	0	0
SIRPB1	10326	broad.mit.edu	37	20	1559046	1559046	+	Missense_Mutation	SNP	C	T	T	rs145977289	byFrequency	TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr20:1559046C>T	uc010gai.2	-	2	470	c.371G>A	c.(370-372)CGG>CAG	p.R124Q	SIRPB1_uc002wfk.3_Missense_Mutation_p.R124Q	NM_006065	NP_006056	O00241	SIRB1_HUMAN	signal-regulatory protein beta 1 isoform 1	124	Extracellular (Potential).|Ig-like V-type.				cell junction assembly|cell surface receptor linked signaling pathway	integral to plasma membrane	protein binding			ovary(1)	1						GCTCCCTTTCCGGAACTTCAC	0.542													37	69					0	0	0.000270559	0	0
C20orf196	149840	broad.mit.edu	37	20	5843845	5843845	+	Silent	SNP	T	G	G			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr20:5843845T>G	uc002wmf.2	+	3	441	c.354T>G	c.(352-354)TCT>TCG	p.S118S		NM_152504	NP_689717	Q8IYI0	CT196_HUMAN	hypothetical protein LOC149840	118											0						ACTCACTCTCTGCATCTGTCT	0.498													5	55					0	0	0.000442599	0	0
BMP2	650	broad.mit.edu	37	20	6759494	6759494	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr20:6759494C>T	uc002wmu.1	+	3	1734	c.949C>T	c.(949-951)CCC>TCC	p.P317S		NM_001200	NP_001191	P12643	BMP2_HUMAN	bone morphogenetic protein 2 preproprotein	317					BMP signaling pathway involved in heart induction|bone mineralization involved in bone maturation|cardiac cell differentiation|cardiac epithelial to mesenchymal transition|cartilage development|growth|negative regulation of cell cycle|negative regulation of cell proliferation|negative regulation of transcription from RNA polymerase II promoter|osteoblast differentiation|pathway-restricted SMAD protein phosphorylation|positive regulation of apoptosis|positive regulation of bone mineralization|positive regulation of cartilage development|positive regulation of endothelial cell proliferation|positive regulation of osteoblast differentiation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of phosphatase activity|positive regulation of transcription from RNA polymerase II promoter|SMAD protein signal transduction	extracellular space	activin receptor activity, type II|BMP receptor binding|cytokine activity|growth factor activity|phosphatase activator activity|protein heterodimerization activity|SMAD binding|transforming growth factor beta receptor binding			ovary(1)|breast(1)	2					Simvastatin(DB00641)	GATTGTGGCTCCCCCGGGGTA	0.512													10	47					0	0	6.40141e-05	0	0
PLCB4	5332	broad.mit.edu	37	20	9388582	9388582	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr20:9388582G>A	uc002wnf.2	+	20	1766	c.1630G>A	c.(1630-1632)GAT>AAT	p.D544N	PLCB4_uc010gbw.1_Missense_Mutation_p.D544N|PLCB4_uc010gbx.2_Missense_Mutation_p.D556N|PLCB4_uc002wne.2_Missense_Mutation_p.D544N|PLCB4_uc002wnh.2_Missense_Mutation_p.D391N	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	544					intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						CACTGTAGAAGATGAGCAGGC	0.428													18	84					0	0	0.000229342	0	0
PLCB4	5332	broad.mit.edu	37	20	9424845	9424845	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr20:9424845G>A	uc002wnf.2	+	30	2935	c.2799G>A	c.(2797-2799)AAG>AAA	p.K933K	PLCB4_uc010gbw.1_Silent_p.K933K|PLCB4_uc010gbx.2_Silent_p.K945K|PLCB4_uc002wne.2_Silent_p.K933K|PLCB4_uc002wnh.2_Silent_p.K780K	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	933					intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						AGCATTTAAAGAAACAGCAGA	0.318													7	74					0	0	0.000274275	0	0
C20orf26	26074	broad.mit.edu	37	20	20208996	20208996	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr20:20208996C>T	uc002wru.2	+	18	2112	c.2036C>T	c.(2035-2037)TCC>TTC	p.S679F	C20orf26_uc010zse.1_Missense_Mutation_p.S659F|C20orf26_uc002wrw.2_RNA|C20orf26_uc002wrv.2_Missense_Mutation_p.S35F	NM_015585	NP_056400	Q8NHU2	CT026_HUMAN	hypothetical protein LOC26074	679										ovary(3)|pancreas(1)	4				READ - Rectum adenocarcinoma(2;0.171)		GTTGGAATTTCCTTCCTAGAG	0.333													44	172					0	0	0.000781405	0	0
ENTPD6	955	broad.mit.edu	37	20	25187963	25187963	+	Nonsense_Mutation	SNP	C	G	G			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr20:25187963C>G	uc002wuj.2	+	3	486	c.306C>G	c.(304-306)TAC>TAG	p.Y102*	ENTPD6_uc010zsy.1_Nonsense_Mutation_p.Y102*|ENTPD6_uc010gdj.1_Nonsense_Mutation_p.Y74*|ENTPD6_uc010zsz.1_Intron|ENTPD6_uc002wum.2_Nonsense_Mutation_p.Y85*|ENTPD6_uc010zta.1_Nonsense_Mutation_p.Y102*|ENTPD6_uc002wun.2_Nonsense_Mutation_p.Y102*|ENTPD6_uc002wuk.2_Nonsense_Mutation_p.Y101*|ENTPD6_uc002wul.2_Nonsense_Mutation_p.Y101*|ENTPD6_uc010ztb.1_Nonsense_Mutation_p.Y74*|ENTPD6_uc010ztc.1_Nonsense_Mutation_p.Y74*|ENTPD6_uc002wuo.2_Intron|ENTPD6_uc010ztd.1_5'Flank	NM_001247	NP_001238	O75354	ENTP6_HUMAN	ectonucleoside triphosphate diphosphohydrolase 6	102	Lumenal (Potential).					Golgi membrane|integral to membrane	nucleoside-diphosphatase activity				0						AGGTCTTCTACGGGATCATGT	0.667													5	26					0	0	0.000602214	0	0
DEFB119	245932	broad.mit.edu	37	20	29965226	29965226	+	Silent	SNP	A	G	G			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr20:29965226A>G	uc002wvt.2	-	2	198	c.78T>C	c.(76-78)CTT>CTC	p.L26L	DEFB119_uc002wvs.2_Missense_Mutation_p.S40P	NM_153289	NP_695021	Q8N690	DB119_HUMAN	defensin, beta 119 isoform a precursor	26					defense response to bacterium	extracellular region					0	all_hematologic(12;0.158)		Colorectal(19;0.00254)|COAD - Colon adenocarcinoma(19;0.0347)			CCATGCATCGAAGGATGTGGC	0.428													14	76					0	0	0.000422831	0	0
TPX2	22974	broad.mit.edu	37	20	30345338	30345338	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr20:30345338C>T	uc002wwp.1	+	3	757	c.59C>T	c.(58-60)TCA>TTA	p.S20L	TPX2_uc010gdv.1_Missense_Mutation_p.S20L	NM_012112	NP_036244	Q9ULW0	TPX2_HUMAN	TPX2, microtubule-associated protein homolog	20					activation of protein kinase activity|apoptosis|cell division|cell proliferation|mitosis|regulation of mitotic spindle organization	cytoplasm|microtubule|nucleus|spindle pole	ATP binding|GTP binding|protein kinase binding			large_intestine(1)|ovary(1)	2			Epithelial(4;0.000771)|Colorectal(19;0.00306)|all cancers(5;0.004)|COAD - Colon adenocarcinoma(19;0.0347)|OV - Ovarian serous cystadenocarcinoma(3;0.0656)			ATCAATTTTTCATCCTTGGAT	0.403													14	74					0	0	0.000308642	0	0
DNMT3B	1789	broad.mit.edu	37	20	31394046	31394046	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr20:31394046C>T	uc002wyc.2	+	22	2654	c.2333C>T	c.(2332-2334)TCG>TTG	p.S778L	DNMT3B_uc002wyd.2_Missense_Mutation_p.S758L|DNMT3B_uc002wye.2_Intron|DNMT3B_uc010gee.2_RNA|DNMT3B_uc010gef.2_Intron|DNMT3B_uc010ztz.1_Intron|DNMT3B_uc010zua.1_Intron|DNMT3B_uc002wyf.2_Missense_Mutation_p.S770L|DNMT3B_uc002wyg.2_Intron|DNMT3B_uc010geg.2_Intron|DNMT3B_uc010geh.2_RNA	NM_006892	NP_008823	Q9UBC3	DNM3B_HUMAN	DNA cytosine-5 methyltransferase 3 beta isoform	778					negative regulation of histone H3-K9 methylation|positive regulation of gene expression|positive regulation of histone H3-K4 methylation		metal ion binding|protein binding|transcription corepressor activity			lung(3)|ovary(2)	5						ACCACCAAGTCGAACTCGATC	0.448													13	49					0	0	0.000219431	0	0
BPIL3	128859	broad.mit.edu	37	20	31620830	31620830	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr20:31620830G>A	uc010zuc.1	+	2	138	c.138G>A	c.(136-138)AAG>AAA	p.K46K	BPIL3_uc010zud.1_5'UTR	NM_174897	NP_777557	Q8NFQ5	BPIL3_HUMAN	bactericidal/permeability-increasing	46						extracellular region	lipid binding			ovary(1)|pancreas(1)	2						TCCTGGAGAAGATGGCAGCCG	0.557													15	57					0	0	0.000422831	0	0
E2F1	1869	broad.mit.edu	37	20	32268156	32268156	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr20:32268156C>T	uc002wzu.3	-	2	468	c.328G>A	c.(328-330)GGC>AGC	p.G110S		NM_005225	NP_005216	Q01094	E2F1_HUMAN	E2F transcription factor 1	110	Potential.			KRRLDLETDHQYLAESSGPARGR -> RTPGTPRRQRRLCP PRRPGRAPC (in Ref. 8; AAD14150).	apoptosis|cell proliferation|G1 phase of mitotic cell cycle|G2 phase of mitotic cell cycle|mRNA stabilization|negative regulation of transcription involved in G1/S phase of mitotic cell cycle|positive regulation of fibroblast proliferation|positive regulation of transcription from RNA polymerase II promoter|regulation of G1/S transition of mitotic cell cycle	mitochondrion|Rb-E2F complex	sequence-specific DNA binding transcription factor activity|transcription corepressor activity|transcription factor binding				0						CGGCCTCTGCCCCGAGCTGGC	0.602													11	29					0	0	0.00010058	0	0
PTPRT	11122	broad.mit.edu	37	20	40730799	40730799	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr20:40730799C>T	uc002xkg.2	-	26	3863	c.3679G>A	c.(3679-3681)GAA>AAA	p.E1227K	PTPRT_uc010ggj.2_Missense_Mutation_p.E1246K|PTPRT_uc010ggi.2_Missense_Mutation_p.E430K	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	1227	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 2.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				TTGCTGGATTCTCCGTCCACT	0.547													7	63					0	0	0.000442599	0	0
TOX2	84969	broad.mit.edu	37	20	42697310	42697310	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr20:42697310C>T	uc002xlf.3	+	8	1468	c.1451C>T	c.(1450-1452)TCG>TTG	p.S484L	TOX2_uc010ggo.2_Missense_Mutation_p.S502L|TOX2_uc002xle.3_Missense_Mutation_p.S460L|TOX2_uc010ggp.2_Missense_Mutation_p.S460L|TOX2_uc002xlg.2_Missense_Mutation_p.S301L|TOX2_uc010zwk.1_Missense_Mutation_p.S380L	NM_001098798	NP_001092268	Q96NM4	TOX2_HUMAN	TOX high mobility group box family member 2	484					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.00189)			AGGGACAAATCGCTCTACCTC	0.627													10	27					0	0	6.40141e-05	0	0
PCIF1	63935	broad.mit.edu	37	20	44567907	44567907	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr20:44567907C>T	uc002xqs.2	+	4	492	c.178C>T	c.(178-180)CCC>TCC	p.P60S		NM_022104	NP_071387	Q9H4Z3	PCIF1_HUMAN	phosphorylated CTD interacting factor 1	60	WW.					nucleus				skin(1)	1						GGAGAATCGTCCCTACTACTT	0.627													25	29					0	0	0.000147802	0	0
ZNF335	63925	broad.mit.edu	37	20	44592254	44592255	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr20:44592254_44592255GG>TT	uc002xqw.2	-	9	1513_1514	c.1390_1391CC>AA	c.(1390-1392)CCC>AAC	p.P464N	ZNF335_uc010zxk.1_Missense_Mutation_p.P309N	NM_022095	NP_071378	Q9H4Z2	ZN335_HUMAN	zinc finger protein 335	464					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(3)|ovary(1)	4		Myeloproliferative disorder(115;0.0122)				GCACAGGAAGGGCCTCAAAAGT	0.574													48	64					0	0	6.4e-05	0	0
SULF2	55959	broad.mit.edu	37	20	46307506	46307506	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr20:46307506G>A	uc002xto.2	-	8	1437	c.1107C>T	c.(1105-1107)ATC>ATT	p.I369I	SULF2_uc002xtr.2_Silent_p.I369I|SULF2_uc002xtq.2_Silent_p.I369I	NM_018837	NP_061325	Q8IWU5	SULF2_HUMAN	sulfatase 2 isoform a precursor	369					bone development|heparan sulfate proteoglycan metabolic process|kidney development|negative regulation of fibroblast growth factor receptor signaling pathway	cell surface|endoplasmic reticulum|extracellular space|Golgi stack	arylsulfatase activity|calcium ion binding			ovary(2)|breast(2)|pancreas(1)|skin(1)	6						CAATGTCCAGGATGGTGGGGG	0.617													43	86					0	0	0.000781405	0	0
STAU1	6780	broad.mit.edu	37	20	47734876	47734876	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr20:47734876C>T	uc002xud.2	-	10	1594	c.1183G>A	c.(1183-1185)GGG>AGG	p.G395R	STAU1_uc002xua.2_Missense_Mutation_p.G314R|STAU1_uc002xub.2_Missense_Mutation_p.G320R|STAU1_uc002xuc.2_Missense_Mutation_p.G314R|STAU1_uc002xue.2_Missense_Mutation_p.G314R|STAU1_uc002xuf.2_Missense_Mutation_p.G320R|STAU1_uc002xug.2_Missense_Mutation_p.G395R	NM_017453	NP_059347	O95793	STAU1_HUMAN	staufen isoform b	395						microtubule associated complex|rough endoplasmic reticulum|stress granule	double-stranded RNA binding			ovary(4)|kidney(1)	5			BRCA - Breast invasive adenocarcinoma(12;0.000644)|Colorectal(8;0.198)			TTACTAGTCCCATTTTCATCC	0.438													24	40					0	0	0.000878237	0	0
SPATA2	9825	broad.mit.edu	37	20	48522753	48522753	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr20:48522753G>A	uc010gie.2	-	3	1316	c.966C>T	c.(964-966)GCC>GCT	p.A322A	SPATA2_uc002xuw.2_Silent_p.A322A|SPATA2_uc010zyn.1_Silent_p.A185A	NM_001135773	NP_001129245	Q9UM82	SPAT2_HUMAN	spermatogenesis associated 2	322					cell differentiation|multicellular organismal development|spermatogenesis	cytoplasm|nucleus				central_nervous_system(1)|skin(1)	2	Hepatocellular(150;0.133)		BRCA - Breast invasive adenocarcinoma(9;4.03e-06)			CGCGCAGCAGGGCCGGGCCGT	0.662													18	65					0	0	0.000375601	0	0
TSHZ2	128553	broad.mit.edu	37	20	51870393	51870393	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr20:51870393C>T	uc002xwo.2	+	2	1352	c.396C>T	c.(394-396)ATC>ATT	p.I132I		NM_173485	NP_775756	Q9NRE2	TSH2_HUMAN	teashirt zinc finger homeobox 2	132					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|haematopoietic_and_lymphoid_tissue(1)	6			STAD - Stomach adenocarcinoma(23;0.1)			ACGCCAACATCCTGTCGGATT	0.522													7	62					0	0	0.000157383	0	0
TSHZ2	128553	broad.mit.edu	37	20	51870456	51870456	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr20:51870456G>A	uc002xwo.2	+	2	1415	c.459G>A	c.(457-459)AGG>AGA	p.R153R		NM_173485	NP_775756	Q9NRE2	TSH2_HUMAN	teashirt zinc finger homeobox 2	153					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|haematopoietic_and_lymphoid_tissue(1)	6			STAD - Stomach adenocarcinoma(23;0.1)			GTGAGAGGAGGAACTGTGACA	0.522													20	98					0	0	0.000720815	0	0
BCAS1	8537	broad.mit.edu	37	20	52569994	52569994	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr20:52569994G>A	uc002xws.2	-	11	1995	c.1657C>T	c.(1657-1659)CTT>TTT	p.L553F	BCAS1_uc010zza.1_Missense_Mutation_p.L219F|BCAS1_uc010zzb.1_Missense_Mutation_p.L479F|BCAS1_uc010gim.2_Missense_Mutation_p.L409F|BCAS1_uc002xwt.2_Missense_Mutation_p.L539F|BCAS1_uc010gil.1_Missense_Mutation_p.L475F	NM_003657	NP_003648	O75363	BCAS1_HUMAN	breast carcinoma amplified sequence 1	553						cytoplasm	protein binding			ovary(2)|central_nervous_system(1)	3	Breast(2;9.53e-15)|Lung NSC(4;5.57e-06)|all_lung(4;1.44e-05)		STAD - Stomach adenocarcinoma(23;0.116)|Colorectal(105;0.198)			AAGCCCCCAAGGGACTGCTGC	0.532													14	48					0	0	0.00074312	0	0
CBLN4	140689	broad.mit.edu	37	20	54575808	54575808	+	Silent	SNP	G	C	C			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr20:54575808G>C	uc002xxa.2	-	2	1172	c.387C>G	c.(385-387)GTC>GTG	p.V129V		NM_080617	NP_542184	Q9NTU7	CBLN4_HUMAN	cerebellin 4 precursor	129	C1q.					cell junction|extracellular region|synapse				ovary(3)|pancreas(1)	4			Colorectal(105;0.202)			GGCTCTGGTAGACTTTAATCA	0.373													6	146					0	0	0.000157383	0	0
ZNF831	128611	broad.mit.edu	37	20	57782092	57782092	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr20:57782092G>A	uc002yan.2	+	3	4008	c.4008G>A	c.(4006-4008)CAG>CAA	p.Q1336Q		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	1336						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					CCCCTGGGCAGACCTCTTCAG	0.582													12	52					0	0	0.000219431	0	0
EDN3	1908	broad.mit.edu	37	20	57876671	57876672	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr20:57876671_57876672GG>AA	uc002yap.2	+	2	628_629	c.259_260GG>AA	c.(259-261)GGG>AAG	p.G87K	EDN3_uc002yao.1_Missense_Mutation_p.G87K|EDN3_uc002yaq.2_Missense_Mutation_p.G87K|EDN3_uc002yar.2_Missense_Mutation_p.G87K|EDN3_uc002yas.2_Missense_Mutation_p.G87K	NM_000114	NP_000105	P14138	EDN3_HUMAN	endothelin 3 isoform 1 preproprotein	87					cell surface receptor linked signaling pathway|inositol phosphate-mediated signaling|neutrophil chemotaxis|peptide hormone secretion|positive regulation of heart rate|positive regulation of hormone secretion|positive regulation of leukocyte chemotaxis|positive regulation of MAP kinase activity|positive regulation of mitosis|regulation of systemic arterial blood pressure by endothelin|regulation of vasoconstriction|vein smooth muscle contraction	extracellular space|soluble fraction	endothelin B receptor binding|hormone activity			skin(1)	1	all_lung(29;0.0115)					GGCGGCCGAGGGGGCCCCTGAG	0.639													39	44					0	0	6.4e-05	0	0
SYCP2	10388	broad.mit.edu	37	20	58441356	58441356	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr20:58441356C>A	uc002yaz.2	-	40	4451	c.4312G>T	c.(4312-4314)GAA>TAA	p.E1438*		NM_014258	NP_055073	Q9BX26	SYCP2_HUMAN	synaptonemal complex protein 2	1438					cell division|meiotic prophase I|synaptonemal complex assembly		DNA binding			ovary(3)|lung(2)	5	all_lung(29;0.00344)		BRCA - Breast invasive adenocarcinoma(7;1.19e-09)			ACCACAAATTCCTTTTCCAAA	0.259													21	38					5.35356e-11	6.72492e-10	0.000375601	1	0
DIDO1	11083	broad.mit.edu	37	20	61512857	61512857	+	Missense_Mutation	SNP	T	G	G			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr20:61512857T>G	uc002ydr.1	-	16	4715	c.4451A>C	c.(4450-4452)AAA>ACA	p.K1484T	DIDO1_uc002yds.1_Missense_Mutation_p.K1484T	NM_033081	NP_149072	Q9BTC0	DIDO1_HUMAN	death inducer-obliterator 1 isoform c	1484					apoptosis|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(3)|skin(3)	6	Breast(26;5.68e-08)					CTCGATCTGTTTGTTCAGCTC	0.627													24	117					0	0	0.000375601	0	0
COL20A1	57642	broad.mit.edu	37	20	61938855	61938855	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr20:61938855C>T	uc011aau.1	+	6	610	c.510C>T	c.(508-510)TTC>TTT	p.F170F	COL20A1_uc011aav.1_5'UTR	NM_020882	NP_065933	Q9P218	COKA1_HUMAN	collagen, type XX, alpha 1	170					cell adhesion	collagen|extracellular space	structural molecule activity			central_nervous_system(1)	1	all_cancers(38;1.39e-10)					GCCCCCAGTTCCGCTGCCTGC	0.682													7	15					0	0	0.000157383	0	0
TPTE	7179	broad.mit.edu	37	21	10908889	10908889	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr21:10908889G>A	uc002yip.1	-	23	1824	c.1456C>T	c.(1456-1458)CCT>TCT	p.P486S	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Missense_Mutation_p.P468S|TPTE_uc002yir.1_Missense_Mutation_p.P448S|TPTE_uc010gkv.1_Missense_Mutation_p.P348S	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	486	C2 tensin-type.				signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		TAGTATGTAGGAAGATTCTAA	0.264													6	48					0	0	0.000274275	0	0
RBM11	54033	broad.mit.edu	37	21	15599508	15599508	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr21:15599508G>A	uc002yjo.3	+	5	782	c.740G>A	c.(739-741)CGA>CAA	p.R247Q	RBM11_uc002yjn.3_Missense_Mutation_p.R133Q|RBM11_uc002yjp.3_Missense_Mutation_p.R133Q	NM_144770	NP_658983	P57052	RBM11_HUMAN	RNA binding motif protein 11	247							nucleotide binding|RNA binding				0				Epithelial(23;0.000314)|COAD - Colon adenocarcinoma(22;0.00242)|Colorectal(24;0.0129)|Lung(58;0.141)		ATGAATAAACGAAAGAGACAA	0.408													52	97					0	0	0.000781405	0	0
GRIK1	2897	broad.mit.edu	37	21	30925914	30925914	+	Missense_Mutation	SNP	T	C	C			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr21:30925914T>C	uc002yno.1	-	17	3183	c.2719A>G	c.(2719-2721)AGA>GGA	p.R907G	GRIK1_uc002ynn.2_Intron|GRIK1_uc011acs.1_Intron|GRIK1_uc011act.1_Intron	NM_000830	NP_000821	P39086	GRIK1_HUMAN	glutamate receptor, ionotropic, kainate 1	907	Cytoplasmic (Potential).				central nervous system development|synaptic transmission	cell junction|postsynaptic membrane	kainate selective glutamate receptor activity			large_intestine(1)|ovary(1)|skin(1)	3					L-Glutamic Acid(DB00142)|Topiramate(DB00273)	CGAATCCCTCTCTCCTCTCGA	0.358													21	71					0	0	0.000175454	0	0
GRIK1	2897	broad.mit.edu	37	21	31023548	31023548	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr21:31023548G>A	uc002yno.1	-	6	1308	c.844C>T	c.(844-846)CTG>TTG	p.L282L	GRIK1_uc002ynn.2_Silent_p.L282L|GRIK1_uc011acs.1_Silent_p.L282L|GRIK1_uc011act.1_Silent_p.L226L|GRIK1_uc010glq.1_Silent_p.L140L|GRIK1_uc002ynr.2_Silent_p.L282L	NM_000830	NP_000821	P39086	GRIK1_HUMAN	glutamate receptor, ionotropic, kainate 1	282	Extracellular (Potential).				central nervous system development|synaptic transmission	cell junction|postsynaptic membrane	kainate selective glutamate receptor activity			large_intestine(1)|ovary(1)|skin(1)	3					L-Glutamic Acid(DB00142)|Topiramate(DB00273)	ATGTTAAGCAGCCGAAACCCG	0.478													17	26					0	0	0.000422831	0	0
GCFC1	94104	broad.mit.edu	37	21	34133374	34133375	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr21:34133374_34133375GG>TT	uc002yqn.2	-	5	1160_1161	c.970_971CC>AA	c.(970-972)CCT>AAT	p.P324N	GCFC1_uc002yqo.2_RNA|GCFC1_uc002yqp.2_Missense_Mutation_p.P324N|GCFC1_uc002yqr.2_Missense_Mutation_p.P324N	NM_016631	NP_057715	Q9Y5B6	GCFC1_HUMAN	GC-rich sequence DNA-binding factor candidate	324						cytosol|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2						TCGTACCTGAGGGATATTAATT	0.342													19	291					0	0	6.4e-05	0	0
ITSN1	6453	broad.mit.edu	37	21	35190728	35190729	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr21:35190728_35190729CC>AA	uc002yta.1	+	23	3153_3154	c.2885_2886CC>AA	c.(2884-2886)CCC>CAA	p.P962Q	DONSON_uc002ysn.1_Intron|ITSN1_uc002yth.3_RNA|ITSN1_uc002ysz.2_Missense_Mutation_p.P957Q|ITSN1_uc010gmg.2_Missense_Mutation_p.P920Q|ITSN1_uc010gmh.2_Intron|ITSN1_uc002ysw.2_Missense_Mutation_p.P962Q|ITSN1_uc010gmi.2_Missense_Mutation_p.P925Q|ITSN1_uc010gmj.2_Missense_Mutation_p.P841Q|ITSN1_uc002ysy.2_Missense_Mutation_p.P957Q|ITSN1_uc002ysx.2_Missense_Mutation_p.P920Q|ITSN1_uc002ytb.1_Missense_Mutation_p.P957Q|ITSN1_uc002ytd.2_RNA|ITSN1_uc010gmk.2_Missense_Mutation_p.P925Q|ITSN1_uc010gml.2_Intron|ITSN1_uc002ytj.2_Missense_Mutation_p.P957Q|ITSN1_uc010gmm.1_RNA|ITSN1_uc002yte.2_Missense_Mutation_p.P896Q|ITSN1_uc002ytg.1_Missense_Mutation_p.P15Q	NM_003024	NP_003015	Q15811	ITSN1_HUMAN	intersectin 1 isoform ITSN-l	962	SH3 2.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|synaptic vesicle endocytosis	cell junction|coated pit|cytosol|lamellipodium|synapse|synaptosome	calcium ion binding|proline-rich region binding|protein complex scaffold|Rho guanyl-nucleotide exchange factor activity			ovary(3)|skin(1)	4						GGTTGGTTCCCCAAGTCTTACG	0.386													12	164					0	0	6.4e-05	0	0
BRWD1	54014	broad.mit.edu	37	21	40636394	40636394	+	Missense_Mutation	SNP	A	C	C			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr21:40636394A>C	uc002yxk.1	-	17	2016	c.1877T>G	c.(1876-1878)GTG>GGG	p.V626G	BRWD1_uc010goc.1_5'UTR|BRWD1_uc002yxl.2_Missense_Mutation_p.V626G|BRWD1_uc010goe.1_RNA|BRWD1_uc010gof.1_Missense_Mutation_p.V79G|BRWD1_uc010gog.1_RNA|BRWD1_uc010goh.1_RNA|BRWD1_uc010goi.1_Missense_Mutation_p.V346G	NM_018963	NP_061836	Q9NSI6	BRWD1_HUMAN	bromodomain and WD repeat domain containing 1	626					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus				skin(3)|ovary(1)	4		Prostate(19;8.44e-08)|all_epithelial(19;0.223)				ACTTGTTGCCACATAGCCCAG	0.284													22	51					0	0	0.000229342	0	0
RIPK4	54101	broad.mit.edu	37	21	43162041	43162041	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr21:43162041C>T	uc002yzn.1	-	8	1360	c.1312G>A	c.(1312-1314)GGT>AGT	p.G438S		NM_020639	NP_065690	P57078	RIPK4_HUMAN	ankyrin repeat domain 3	438						cytoplasm|nucleus	ATP binding|protein serine/threonine kinase activity			ovary(2)|central_nervous_system(2)|large_intestine(1)|lung(1)|skin(1)	7						AGGCTGGCACCGCTGTCCAGT	0.627													38	73					0	0	0.000953801	0	0
ZNF295	49854	broad.mit.edu	37	21	43411272	43411272	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr21:43411272G>A	uc002zab.3	-	3	3147	c.2933C>T	c.(2932-2934)CCC>CTC	p.P978L	ZNF295_uc002yzz.3_Missense_Mutation_p.P777L|ZNF295_uc002yzy.3_Missense_Mutation_p.P978L|ZNF295_uc002zaa.3_Missense_Mutation_p.P978L	NM_001098402	NP_001091872	Q9ULJ3	ZN295_HUMAN	zinc finger protein 295 isoform L	978					negative regulation of transcription, DNA-dependent|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|nucleus	methyl-CpG binding|protein binding|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3						AGAGTTTGTGGGAACAGGGCA	0.562													44	76					0	0	0.000781405	0	0
CBS	875	broad.mit.edu	37	21	44488672	44488673	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr21:44488672_44488673GG>TT	uc002zcu.2	-	4	507_508	c.262_263CC>AA	c.(262-264)CCT>AAT	p.P88N	CBS_uc002zcs.1_5'Flank|CBS_uc002zct.2_Missense_Mutation_p.P88N|CBS_uc002zcw.3_Missense_Mutation_p.P88N|CBS_uc002zcv.2_Missense_Mutation_p.P88N	NM_000071	NP_000062	P35520	CBS_HUMAN	cystathionine-beta-synthase	88			P -> S (in CBSD).		cysteine biosynthetic process from serine|cysteine biosynthetic process via cystathionine|homocysteine catabolic process|hydrogen sulfide biosynthetic process|L-cysteine catabolic process|L-serine catabolic process	cytosol|nucleolus	cystathionine beta-synthase activity|heme binding|protein homodimerization activity|pyridoxal phosphate binding|ubiquitin protein ligase binding				0					L-Cysteine(DB00151)|L-Serine(DB00133)|Pyridoxal Phosphate(DB00114)|Pyridoxine(DB00165)|S-Adenosylmethionine(DB00118)	TCTGACCATAGGGGTGTCCCCG	0.45													12	299					0	0	6.4e-05	0	0
PWP2	5822	broad.mit.edu	37	21	45538649	45538649	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr21:45538649C>T	uc002zeb.2	+	9	1076	c.986C>T	c.(985-987)TCA>TTA	p.S329L		NM_005049	NP_005040	Q15269	PWP2_HUMAN	PWP2 periodic tryptophan protein homolog	329	WD 7.					cytoplasm|nucleolus	signal transducer activity			pancreas(1)	1				STAD - Stomach adenocarcinoma(101;0.172)|Colorectal(79;0.2)		TGCAGCATTTCAGATCAGAGC	0.602													7	16					0	0	0.000274275	0	0
CECR1	51816	broad.mit.edu	37	22	17688149	17688149	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr22:17688149G>A	uc002zmk.1	-	2	566	c.354C>T	c.(352-354)ATC>ATT	p.I118I	CECR1_uc010gqu.1_Silent_p.I118I|CECR1_uc011agi.1_Silent_p.I76I|CECR1_uc011agj.1_Silent_p.I76I	NM_017424	NP_059120	Q9NZK5	CECR1_HUMAN	cat eye syndrome critical region protein 1	118					adenosine catabolic process|hypoxanthine salvage|inosine biosynthetic process|multicellular organismal development|purine ribonucleoside monophosphate biosynthetic process	extracellular space|Golgi apparatus	adenosine deaminase activity|adenosine receptor binding|growth factor activity|heparin binding|protein homodimerization activity|proteoglycan binding|zinc ion binding			ovary(1)	1		all_epithelial(15;0.0152)|Lung NSC(13;0.0875)|all_lung(157;0.106)				CCATAGTCACGATGCCAATGT	0.552													17	18					0	0	0.000175454	0	0
PPM1F	9647	broad.mit.edu	37	22	22279998	22279998	+	Missense_Mutation	SNP	A	C	C			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr22:22279998A>C	uc002zvp.1	-	7	1043	c.929T>G	c.(928-930)GTG>GGG	p.V310G	PPM1F_uc011aik.1_Missense_Mutation_p.V206G|PPM1F_uc002zvq.2_Missense_Mutation_p.V310G	NM_014634	NP_055449	P49593	PPM1F_HUMAN	protein phosphatase 1F	310					apoptosis|protein dephosphorylation	protein serine/threonine phosphatase complex	metal ion binding|protein serine/threonine phosphatase activity			ovary(2)|large_intestine(1)|breast(1)|kidney(1)	5	Colorectal(54;0.105)			READ - Rectum adenocarcinoma(21;0.155)		CATGTGAGACACAAAGCCACC	0.627													6	7					0	0	0.000157383	0	0
RGL4	266747	broad.mit.edu	37	22	24034999	24034999	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr22:24034999G>A	uc002zxn.2	+	3	1687	c.517G>A	c.(517-519)GGG>AGG	p.G173R	LOC91316_uc002zxh.3_RNA|LOC91316_uc002zxi.3_RNA|LOC91316_uc002zxk.3_Intron|LOC91316_uc010gua.2_Intron|LOC91316_uc002zxl.3_Intron|LOC91316_uc011aiz.1_Intron|LOC91316_uc002zxm.3_Intron|RGL4_uc002zxo.2_Missense_Mutation_p.G173R|RGL4_uc002zxp.1_Missense_Mutation_p.G37R|RGL4_uc002zxq.2_Missense_Mutation_p.G37R	NM_153615	NP_705843	Q8IZJ4	RGDSR_HUMAN	ral guanine nucleotide dissociation	173	Pro-rich.				small GTPase mediated signal transduction	cytoplasmic membrane-bounded vesicle	guanyl-nucleotide exchange factor activity			ovary(1)	1						TTCAGCACCAGGGCCAGCACC	0.647											OREG0007113	type=TRANSCRIPTION FACTOR BINDING SITE|Gene=Rgr|TFbs=REST|Dataset=NRSF/REST ChIPSeq sites|EvidenceSubtype=Chromatin immunoprecipitation with tag sequencing (ChIP-TS)	38	32					0	0	0.000509022	0	0
CABIN1	23523	broad.mit.edu	37	22	24483564	24483564	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr22:24483564C>T	uc002zzi.1	+	23	3550	c.3423C>T	c.(3421-3423)TCC>TCT	p.S1141S	CABIN1_uc002zzj.1_Silent_p.S1091S|CABIN1_uc002zzl.1_Silent_p.S1141S	NM_012295	NP_036427	Q9Y6J0	CABIN_HUMAN	calcineurin binding protein 1	1141					cell surface receptor linked signaling pathway|chromatin modification	nucleus	protein phosphatase inhibitor activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	5						CCAACTTGTCCCTATGGATTG	0.562													21	66					0	0	0.00047179	0	0
SGSM1	129049	broad.mit.edu	37	22	25255730	25255730	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr22:25255730G>A	uc003abg.2	+	9	1006	c.849G>A	c.(847-849)ACG>ACA	p.T283T	SGSM1_uc003abh.2_Silent_p.T283T|SGSM1_uc010guu.1_Silent_p.T283T|SGSM1_uc003abj.2_Silent_p.T283T|SGSM1_uc003abi.1_Silent_p.T258T|SGSM1_uc003abf.2_Silent_p.T283T	NM_001039948	NP_001035037	Q2NKQ1	SGSM1_HUMAN	RUN and TBC1 domain containing 2 isoform 1	283						Golgi apparatus	Rab GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)	5						TGCACCAGACGGCTGACGTCA	0.592													11	69					0	0	0.000673444	0	0
SGSM1	129049	broad.mit.edu	37	22	25264821	25264821	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr22:25264821C>T	uc003abg.2	+	12	1447	c.1290C>T	c.(1288-1290)TTC>TTT	p.F430F	SGSM1_uc003abh.2_Silent_p.F430F|SGSM1_uc010guu.1_Silent_p.F430F|SGSM1_uc003abj.2_Silent_p.F430F|SGSM1_uc003abi.1_Silent_p.F405F	NM_001039948	NP_001035037	Q2NKQ1	SGSM1_HUMAN	RUN and TBC1 domain containing 2 isoform 1	430						Golgi apparatus	Rab GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)	5						AGTCGGAATTCGGTGAGCTGC	0.532													25	65					0	0	0.000184323	0	0
CHEK2	11200	broad.mit.edu	37	22	29130443	29130443	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr22:29130443G>A	uc003adu.1	-	2	339	c.267C>T	c.(265-267)ACC>ACT	p.T89T	CHEK2_uc003ads.1_5'UTR|CHEK2_uc010gvh.1_Silent_p.T89T|CHEK2_uc010gvi.1_Silent_p.T89T|CHEK2_uc010gvj.1_RNA|CHEK2_uc003adr.1_RNA|CHEK2_uc010gvk.1_RNA|CHEK2_uc003adt.1_Silent_p.T89T|CHEK2_uc003adv.1_Silent_p.T89T|CHEK2_uc003adw.1_Silent_p.T89T|CHEK2_uc003adx.1_5'UTR|CHEK2_uc003ady.1_Silent_p.T89T|CHEK2_uc003adz.1_5'UTR	NM_007194	NP_009125	O96017	CHK2_HUMAN	protein kinase CHK2 isoform a	89					cell cycle|DNA damage checkpoint|DNA damage response, signal transduction resulting in induction of apoptosis|replicative senescence	PML body	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			central_nervous_system(17)|stomach(1)|ovary(1)|lung(1)	20						AGGGGGCAGGGGTAGGCTCCT	0.493			F			breast 		Direct_reversal_of_damage|Other_conserved_DNA_damage_response_genes	Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|CHEK2-associated_cancer				16	25					0	0	0.000308642	0	0
NIPSNAP1	8508	broad.mit.edu	37	22	29957542	29957542	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr22:29957542G>A	uc003afx.3	-	6	605	c.532C>T	c.(532-534)CCC>TCC	p.P178S	NIPSNAP1_uc011akp.1_Missense_Mutation_p.P158S	NM_003634	NP_003625	Q9BPW8	NIPS1_HUMAN	nipsnap homolog 1	178								p.?(1)		skin(1)	1						CCCATTCTGGGCTGTGGCTCA	0.587													22	63					0	0	0.000229342	0	0
TBC1D10A	83874	broad.mit.edu	37	22	30690047	30690047	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr22:30690047G>A	uc011akt.1	-	7	782	c.758C>T	c.(757-759)TCG>TTG	p.S253L	GATSL3_uc003ahf.2_RNA|GATSL3_uc003ahg.2_RNA|GATSL3_uc003ahh.2_RNA|GATSL3_uc010gvq.2_RNA|GATSL3_uc003ahi.2_Missense_Mutation_p.S111L|TBC1D10A_uc003ahj.3_Missense_Mutation_p.S165L|TBC1D10A_uc010gvu.2_Missense_Mutation_p.S260L|TBC1D10A_uc003ahk.3_Missense_Mutation_p.S253L	NM_031937	NP_114143	Q9BXI6	TB10A_HUMAN	TBC1 domain family, member 10A	253	Rab-GAP TBC.					intracellular|microvillus	guanyl-nucleotide exchange factor activity|PDZ domain binding|Rab GTPase activator activity			ovary(1)	1						GGCCACCGGCGACACCTTCTG	0.612													38	51					0	0	0.000228196	0	0
SEC14L4	284904	broad.mit.edu	37	22	30899737	30899737	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr22:30899737G>A	uc003aid.2	-	2	157	c.57C>T	c.(55-57)TTC>TTT	p.F19F	SEC14L4_uc011akz.1_Silent_p.F19F|SEC14L4_uc003aie.2_5'UTR|SEC14L4_uc003aif.2_5'UTR	NM_174977	NP_777637	Q9UDX3	S14L4_HUMAN	SEC14p-like protein TAP3 isoform a	19						integral to membrane|intracellular	lipid binding|transporter activity			skin(1)	1					Vitamin E(DB00163)	GGTTCTCCCGGAACTGAGCGG	0.632													11	28					0	0	0.00010058	0	0
ISX	91464	broad.mit.edu	37	22	35478548	35478548	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr22:35478548C>T	uc003anj.2	+	2	1218	c.267C>T	c.(265-267)TTC>TTT	p.F89F	ISX_uc011amg.1_Silent_p.F77F	NM_001008494	NP_001008494	Q2M1V0	ISX_HUMAN	intestine-specific homeobox	89	Homeobox.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)	5						GTACCACCTTCACCACTGAGC	0.562													18	51					0	0	0.000132079	0	0
APOL3	80833	broad.mit.edu	37	22	36537413	36537413	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr22:36537413G>A	uc003aot.2	-	3	1082	c.1044C>T	c.(1042-1044)TTC>TTT	p.F348F	APOL3_uc003aoq.2_Silent_p.F277F|APOL3_uc003aor.2_Silent_p.F277F|APOL3_uc003aos.2_Silent_p.F277F|APOL3_uc003aou.2_Silent_p.F148F|APOL3_uc003aov.2_Silent_p.F148F	NM_145640	NP_663615	O95236	APOL3_HUMAN	apolipoprotein L3 isoform 1	348					inflammatory response|lipoprotein metabolic process|positive regulation of I-kappaB kinase/NF-kappaB cascade	cytoplasm|extracellular region	lipid binding|lipid transporter activity|signal transducer activity				0						CCAGTGCAAGGAAGATGCCTG	0.582													17	80					0	0	0.000132079	0	0
TRIOBP	11078	broad.mit.edu	37	22	38121815	38121815	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr22:38121815C>T	uc003atr.2	+	7	3523	c.3252C>T	c.(3250-3252)CCC>CCT	p.P1084P	TRIOBP_uc003atu.2_Silent_p.P912P|TRIOBP_uc003atq.1_Silent_p.P1084P|TRIOBP_uc003ats.1_Silent_p.P912P	NM_001039141	NP_001034230	Q9H2D6	TARA_HUMAN	TRIO and F-actin binding protein isoform 6	1084					actin modification|barbed-end actin filament capping	actin cytoskeleton|cytoplasm|nucleus	actin binding|GTP-Rho binding|myosin II binding|protein binding|ubiquitin protein ligase binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					AATTTGACCCCTTCCCCTTCC	0.632													8	35					0	0	0.000151284	0	0
TRIOBP	11078	broad.mit.edu	37	22	38151143	38151143	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr22:38151143C>T	uc003atr.2	+	14	5794	c.5523C>T	c.(5521-5523)TCC>TCT	p.S1841S	TRIOBP_uc003atu.2_Silent_p.S1669S|TRIOBP_uc003atv.2_Silent_p.S128S|TRIOBP_uc003atw.2_Silent_p.S128S|TRIOBP_uc003atx.1_5'Flank|TRIOBP_uc010gxh.2_5'Flank	NM_001039141	NP_001034230	Q9H2D6	TARA_HUMAN	TRIO and F-actin binding protein isoform 6	1841	PH.				actin modification|barbed-end actin filament capping	actin cytoskeleton|cytoplasm|nucleus	actin binding|GTP-Rho binding|myosin II binding|protein binding|ubiquitin protein ligase binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					ACCTGCGTTCCTGCACGGATG	0.627													6	9					0	0	0.000442599	0	0
TRIOBP	11078	broad.mit.edu	37	22	38155249	38155249	+	Missense_Mutation	SNP	T	C	C			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr22:38155249T>C	uc003atr.2	+	17	6573	c.6302T>C	c.(6301-6303)ATC>ACC	p.I2101T	TRIOBP_uc003atu.2_Missense_Mutation_p.I1929T|TRIOBP_uc003atv.2_Missense_Mutation_p.I388T|TRIOBP_uc003atw.2_Missense_Mutation_p.I388T|TRIOBP_uc003atx.1_5'UTR|TRIOBP_uc010gxh.2_5'UTR	NM_001039141	NP_001034230	Q9H2D6	TARA_HUMAN	TRIO and F-actin binding protein isoform 6	2101	Potential.				actin modification|barbed-end actin filament capping	actin cytoskeleton|cytoplasm|nucleus	actin binding|GTP-Rho binding|myosin II binding|protein binding|ubiquitin protein ligase binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					GATGGCCACATCCCCCCGGGC	0.582													3	21					0	0	0.00024832	0	0
FAM83F	113828	broad.mit.edu	37	22	40425519	40425519	+	Splice_Site	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr22:40425519G>A	uc003ayk.1	+	5	1548	c.1454_splice	c.e5-1	p.G485_splice		NM_138435	NP_612444	Q8NEG4	FA83F_HUMAN	hypothetical protein LOC113828											breast(1)	1						TGCCTCTGCAGGTAAAACAAG	0.567													5	18					0	0	8.12818e-05	0	0
SLC25A17	10478	broad.mit.edu	37	22	41166969	41166970	+	Nonsense_Mutation	DNP	CC	AA	AA			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr22:41166969_41166970CC>AA	uc003azc.2	-	9	932_933	c.792_793GG>TT	c.(790-795)ATGGGA>ATTTGA	p.264_265MG>I*	SLC25A17_uc010gyg.2_RNA|SLC25A17_uc011aou.1_Nonsense_Mutation_p.227_228MG>I*|SLC25A17_uc003azd.2_RNA|SLC25A17_uc011aov.1_Nonsense_Mutation_p.191_192MG>I*	NM_006358	NP_006349	O43808	PM34_HUMAN	solute carrier family 25 (mitochondrial carrier;	264_265	Solcar 3.|Lumenal (Potential).				fatty acid alpha-oxidation	integral to plasma membrane|mitochondrial inner membrane|peroxisomal membrane	adenine nucleotide transmembrane transporter activity|protein binding				0						TTGTAGAGTCCCATTATTCCAA	0.436													11	353					0	0	6.4e-05	0	0
XPNPEP3	63929	broad.mit.edu	37	22	41318413	41318414	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr22:41318413_41318414GG>TT	uc003azh.2	+	8	1224_1225	c.1132_1133GG>TT	c.(1132-1134)GGG>TTG	p.G378L	XPNPEP3_uc003azi.2_Missense_Mutation_p.G299L|XPNPEP3_uc011aoy.1_RNA	NM_022098	NP_071381	Q9NQH7	XPP3_HUMAN	X-prolyl aminopeptidase (aminopeptidase P) 3,	378					cellular process	mitochondrion	aminopeptidase activity|manganese ion binding|metallopeptidase activity				0						CTGCTTCCCTGGGACAAGCTTG	0.475													9	290					0	0	6.4e-05	0	0
CHL1	10752	broad.mit.edu	37	3	367644	367644	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:367644C>T	uc003bou.2	+	4	365	c.94C>T	c.(94-96)CAA>TAA	p.Q32*	CHL1_uc003bot.2_Nonsense_Mutation_p.Q32*|CHL1_uc003bow.1_Nonsense_Mutation_p.Q32*|CHL1_uc011asi.1_Nonsense_Mutation_p.Q32*	NM_006614	NP_006605	O00533	CHL1_HUMAN	cell adhesion molecule with homology to L1CAM	32	Extracellular (Potential).				axon guidance|cell adhesion|signal transduction	integral to membrane|plasma membrane|proteinaceous extracellular matrix				skin(5)|central_nervous_system(4)|large_intestine(2)|ovary(1)	12		all_cancers(2;1.14e-06)|all_epithelial(2;0.00367)|all_lung(1;0.061)|Lung NSC(2;0.201)		Epithelial(13;5.36e-06)|all cancers(10;1.4e-05)|OV - Ovarian serous cystadenocarcinoma(96;0.00323)|COAD - Colon adenocarcinoma(1;0.00925)|Colorectal(20;0.0198)		ATATTTAGTTCAACAGGTTCC	0.323													5	14					0	0	3.59834e-05	0	0
ITPR1	3708	broad.mit.edu	37	3	4716865	4716865	+	Missense_Mutation	SNP	C	G	G			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:4716865C>G	uc003bqa.2	+	23	3060	c.2712C>G	c.(2710-2712)ATC>ATG	p.I904M	ITPR1_uc010hca.1_Missense_Mutation_p.I889M|ITPR1_uc011asu.1_Intron|ITPR1_uc010hcb.1_Missense_Mutation_p.I889M	NM_001099952	NP_001093422	Q14643	ITPR1_HUMAN	inositol 1,4,5-triphosphate receptor, type 1	904	Cytoplasmic (Potential).				activation of phospholipase C activity|cell death|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	endoplasmic reticulum membrane|integral to membrane|platelet dense granule membrane|platelet dense tubular network membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|intracellular ligand-gated calcium channel activity|phosphatidylinositol binding|protein binding			lung(7)|breast(5)|ovary(4)|large_intestine(1)|liver(1)|skin(1)|kidney(1)|pancreas(1)	21				Epithelial(13;0.0199)|OV - Ovarian serous cystadenocarcinoma(96;0.0361)|all cancers(10;0.0982)		TGACAACAATCTTCCCCATTA	0.418													11	101					0	0	0.00010058	0	0
ITPR1	3708	broad.mit.edu	37	3	4829669	4829669	+	Missense_Mutation	SNP	T	G	G			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:4829669T>G	uc003bqa.2	+	49	6858	c.6510T>G	c.(6508-6510)TTT>TTG	p.F2170L	ITPR1_uc010hca.1_Missense_Mutation_p.F2155L|ITPR1_uc011asu.1_Intron|ITPR1_uc003bqc.2_Missense_Mutation_p.F1140L	NM_001099952	NP_001093422	Q14643	ITPR1_HUMAN	inositol 1,4,5-triphosphate receptor, type 1	2218	Cytoplasmic (Potential).				activation of phospholipase C activity|cell death|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	endoplasmic reticulum membrane|integral to membrane|platelet dense granule membrane|platelet dense tubular network membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|intracellular ligand-gated calcium channel activity|phosphatidylinositol binding|protein binding			lung(7)|breast(5)|ovary(4)|large_intestine(1)|liver(1)|skin(1)|kidney(1)|pancreas(1)	21				Epithelial(13;0.0199)|OV - Ovarian serous cystadenocarcinoma(96;0.0361)|all cancers(10;0.0982)		AGATAGTCTTTCCCGTGCCCA	0.358													6	39					0	0	0.000157383	0	0
SLC6A11	6538	broad.mit.edu	37	3	10975831	10975831	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:10975831C>T	uc003bvz.2	+	12	1588	c.1554C>T	c.(1552-1554)ATC>ATT	p.I518I		NM_014229	NP_055044	P48066	S6A11_HUMAN	solute carrier family 6 (neurotransmitter	518	Helical; Name=11; (Potential).				neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity			skin(3)|ovary(1)	4				OV - Ovarian serous cystadenocarcinoma(96;0.229)		GCTGGATGATCATGACCCCTG	0.562													22	80					0	0	0.000375601	0	0
NUP210	23225	broad.mit.edu	37	3	13368735	13368735	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:13368735C>T	uc003bxv.1	-	32	4572	c.4489G>A	c.(4489-4491)GTT>ATT	p.V1497I		NM_024923	NP_079199	Q8TEM1	PO210_HUMAN	nucleoporin 210 precursor	1497	Lumenal (Probable).				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	endoplasmic reticulum membrane|nuclear membrane|nuclear pore				ovary(3)|large_intestine(3)|skin(3)|pancreas(1)|liver(1)	11	all_neural(104;0.187)					CTGGTCAGAACAGTGGCCAGA	0.637													5	10					0	0	3.59834e-05	0	0
TBC1D5	9779	broad.mit.edu	37	3	17300077	17300077	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:17300077G>A	uc003cbf.2	-	16	2917	c.1252C>T	c.(1252-1254)CCA>TCA	p.P418S	TBC1D5_uc010heu.2_Missense_Mutation_p.P5S|TBC1D5_uc010hev.2_Missense_Mutation_p.P418S|TBC1D5_uc003cbe.2_Missense_Mutation_p.P418S|TBC1D5_uc010hew.1_Missense_Mutation_p.P370S	NM_014744	NP_055559	Q92609	TBCD5_HUMAN	TBC1 domain family, member 5 isoform b	418						intracellular	protein binding|Rab GTPase activator activity			ovary(1)	1						ACTGGTCTTGGATTTCTCTAA	0.318													105	81					0	0	0.000781405	0	0
TBC1D5	9779	broad.mit.edu	37	3	17349625	17349625	+	Missense_Mutation	SNP	T	C	C			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:17349625T>C	uc003cbf.2	-	14	2662	c.997A>G	c.(997-999)AGG>GGG	p.R333G	TBC1D5_uc010heu.2_5'UTR|TBC1D5_uc010hev.2_Missense_Mutation_p.R333G|TBC1D5_uc003cbe.2_Missense_Mutation_p.R333G|TBC1D5_uc010hew.1_Missense_Mutation_p.R285G	NM_014744	NP_055559	Q92609	TBCD5_HUMAN	TBC1 domain family, member 5 isoform b	333	Rab-GAP TBC.					intracellular	protein binding|Rab GTPase activator activity			ovary(1)	1						CGCACCCACCTTCTGGAAAGA	0.443													9	9					0	0	0.000673444	0	0
NR1D2	9975	broad.mit.edu	37	3	24003915	24003915	+	Missense_Mutation	SNP	T	C	C			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:24003915T>C	uc003ccs.2	+	5	1284	c.965T>C	c.(964-966)TTC>TCC	p.F322S	NR1D2_uc010hfd.2_RNA|NR1D2_uc011awk.1_Missense_Mutation_p.F247S	NM_005126	NP_005117	Q14995	NR1D2_HUMAN	nuclear receptor subfamily 1, group D, member 2	322					regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	sequence-specific DNA binding|steroid hormone receptor activity|zinc ion binding			urinary_tract(1)|kidney(1)|skin(1)	3						AATGGACAGTTCAAAGGGAGG	0.393													12	32					0	0	0.000308642	0	0
GPD1L	23171	broad.mit.edu	37	3	32200591	32200591	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:32200591G>A	uc003cew.2	+	6	902	c.842G>A	c.(841-843)AGA>AAA	p.R281K		NM_015141	NP_055956	Q8N335	GPD1L_HUMAN	glycerol-3-phosphate dehydrogenase 1-like	281					glycerol-3-phosphate catabolic process	glycerol-3-phosphate dehydrogenase complex	glycerol-3-phosphate dehydrogenase|NAD binding|protein homodimerization activity				0						GCCTTCGCCAGAACTGGGAAG	0.627													8	23					0	0	0.000157383	0	0
CMTM7	112616	broad.mit.edu	37	3	32491044	32491044	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:32491044G>A	uc003cey.1	+	3	668	c.432G>A	c.(430-432)GCG>GCA	p.A144A	CMTM7_uc003cez.1_Intron	NM_138410	NP_612419	Q96FZ5	CKLF7_HUMAN	CKLF-like MARVEL transmembrane domain containing	144	Helical; (Potential).|MARVEL.				chemotaxis	extracellular space|integral to membrane	cytokine activity				0						TAGCCGGAGCGGTGAGGATGT	0.493													9	57					0	0	0.000442599	0	0
SCN10A	6336	broad.mit.edu	37	3	38793780	38793780	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:38793780G>A	uc003ciq.2	-	11	1685	c.1685C>T	c.(1684-1686)TCC>TTC	p.S562F		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	562					sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	TCCATGCCTGGAGTCAGGGTT	0.607													10	62					0	0	0.000673444	0	0
SCN10A	6336	broad.mit.edu	37	3	38798246	38798246	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:38798246C>T	uc003ciq.2	-	9	1209	c.1209G>A	c.(1207-1209)CAG>CAA	p.Q403Q		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	403					sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	TTGCCTGGTTCTGCTCCTCAT	0.483													10	144					0	0	0.000442599	0	0
SCN11A	11280	broad.mit.edu	37	3	38888407	38888407	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:38888407C>T	uc011ays.1	-	26	5353	c.5154G>A	c.(5152-5154)AAG>AAA	p.K1718K		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	1718					response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	CATACAACTTCTTGAGAGGAT	0.433													7	79					0	0	0.000274275	0	0
SCN11A	11280	broad.mit.edu	37	3	38889195	38889195	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:38889195G>A	uc011ays.1	-	26	4565	c.4366C>T	c.(4366-4368)CCT>TCT	p.P1456S		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	1456	IV.				response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	GGAGGGAAAGGAATGTGCTCC	0.502													10	10					0	0	0.000673444	0	0
SCN11A	11280	broad.mit.edu	37	3	38988284	38988284	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:38988284G>A	uc011ays.1	-	2	581	c.382C>T	c.(382-384)CAT>TAT	p.H128Y		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	128	Helical; Name=S1 of repeat I; (By similarity).|I.				response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	GGATATGAATGGACTGAGACT	0.408													25	134					0	0	0.000147802	0	0
XIRP1	165904	broad.mit.edu	37	3	39225770	39225770	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:39225770C>T	uc003cjk.1	-	2	5388	c.5167G>A	c.(5167-5169)GAC>AAC	p.D1723N	XIRP1_uc003cji.2_3'UTR|XIRP1_uc003cjj.2_Missense_Mutation_p.D406N	NM_194293	NP_919269	Q702N8	XIRP1_HUMAN	xin actin-binding repeat containing 1	1723	Interaction with FLNC.						actin binding			ovary(4)|breast(2)|central_nervous_system(1)|pancreas(1)	8				KIRC - Kidney renal clear cell carcinoma(284;0.0517)|Kidney(284;0.065)		TGGGTGATGTCCTTCTTCCCA	0.582													14	35					0	0	0.000151284	0	0
CX3CR1	1524	broad.mit.edu	37	3	39307161	39307161	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:39307161C>T	uc003cjl.2	-	2	932	c.840G>A	c.(838-840)ACG>ACA	p.T280T		NM_001337	NP_001328	P49238	CX3C1_HUMAN	chemokine (C-X3-C motif) receptor 1	280	Helical; Name=7; (Potential).				cell adhesion|cellular defense response|chemotaxis|interspecies interaction between organisms|response to wounding	integral to plasma membrane	chemokine receptor activity			lung(3)	3				KIRC - Kidney renal clear cell carcinoma(284;0.0557)|Kidney(284;0.0699)		TAAATGCAACCGTCTCAGTCA	0.473													41	78					0	0	0.000781405	0	0
CX3CR1	1524	broad.mit.edu	37	3	39307431	39307431	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:39307431G>A	uc003cjl.2	-	2	662	c.570C>T	c.(568-570)CTC>CTT	p.L190L		NM_001337	NP_001328	P49238	CX3C1_HUMAN	chemokine (C-X3-C motif) receptor 1	190	Extracellular (Potential).				cell adhesion|cellular defense response|chemotaxis|interspecies interaction between organisms|response to wounding	integral to plasma membrane	chemokine receptor activity			lung(3)	3				KIRC - Kidney renal clear cell carcinoma(284;0.0557)|Kidney(284;0.0699)		CCACATTGCGGAGCACGGGCC	0.483													10	133					0	0	0.00010058	0	0
ULK4	54986	broad.mit.edu	37	3	41961305	41961305	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:41961305G>A	uc003ckv.3	-	6	748	c.547C>T	c.(547-549)CCT>TCT	p.P183S	ULK4_uc003ckw.2_Missense_Mutation_p.P183S|ULK4_uc003ckx.1_Missense_Mutation_p.P183S	NM_017886	NP_060356	Q96C45	ULK4_HUMAN	unc-51-like kinase 4	183	Protein kinase.						ATP binding|protein serine/threonine kinase activity				0				KIRC - Kidney renal clear cell carcinoma(284;0.214)		GTATATACAGGAGATCCTAAA	0.443													24	44					0	0	0.00047179	0	0
FBXW12	285231	broad.mit.edu	37	3	48414292	48414292	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:48414292G>A	uc003csr.2	+	2	221	c.35G>A	c.(34-36)CGA>CAA	p.R12Q	FBXW12_uc010hjv.2_Intron|FBXW12_uc003css.2_Missense_Mutation_p.R12Q|FBXW12_uc010hjw.2_Intron	NM_207102	NP_996985	Q6X9E4	FBW12_HUMAN	F-box and WD repeat domain containing 12 isoform	12	F-box.										0				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		GCTTTGAAGCGAATCTTCTCT	0.537													32	88					0	0	0.00058488	0	0
TMEM89	440955	broad.mit.edu	37	3	48659036	48659036	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:48659036G>A	uc011bbo.1	-	1	154	c.154C>T	c.(154-156)CTG>TTG	p.L52L		NM_001008269	NP_001008270	A2RUT3	TMM89_HUMAN	transmembrane protein 89 precursor	52	Extracellular (Potential).					integral to membrane					0				BRCA - Breast invasive adenocarcinoma(193;0.000286)|KIRC - Kidney renal clear cell carcinoma(197;0.00544)|Kidney(197;0.00605)		GGACAGCTCAGGCCACCCCTA	0.642													9	23					0	0	0.000442599	0	0
WDR6	11180	broad.mit.edu	37	3	49050863	49050863	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:49050863C>T	uc003cvj.2	+	2	2124	c.1986C>T	c.(1984-1986)TTC>TTT	p.F662F	WDR6_uc011bbx.1_3'UTR|WDR6_uc011bby.1_Silent_p.F110F|WDR6_uc010hkn.2_Silent_p.F606F|WDR6_uc011bbz.1_Silent_p.F581F	NM_018031	NP_060501	Q9NNW5	WDR6_HUMAN	WD repeat domain 6 protein	632	WD 10.				cell cycle arrest|negative regulation of cell proliferation	cytoplasm				central_nervous_system(1)	1				Kidney(197;9.12e-07)|KIRC - Kidney renal clear cell carcinoma(197;1.32e-05)|BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|OV - Ovarian serous cystadenocarcinoma(275;0.000155)		TCCTGGGTTTCCATGCCAATG	0.567													5	32					0	0	0.000602214	0	0
DOCK3	1795	broad.mit.edu	37	3	51312577	51312577	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:51312577G>A	uc011bds.1	+	25	2639	c.2616G>A	c.(2614-2616)GAG>GAA	p.E872E		NM_004947	NP_004938	Q8IZD9	DOCK3_HUMAN	dedicator of cytokinesis 3	872						cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00449)|Kidney(197;0.00518)		AGCAGAAAGAGCTGCTAATTT	0.517													66	130					0	0	0.000781405	0	0
DOCK3	1795	broad.mit.edu	37	3	51411906	51411906	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:51411906C>T	uc011bds.1	+	50	5323	c.5300C>T	c.(5299-5301)CCC>CTC	p.P1767L		NM_004947	NP_004938	Q8IZD9	DOCK3_HUMAN	dedicator of cytokinesis 3	1767	Ser-rich.					cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00449)|Kidney(197;0.00518)		ACAGGCTCTCCCTCTCTGCCA	0.552													4	7					0	0	0.00024832	0	0
TEX264	51368	broad.mit.edu	37	3	51737762	51737762	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:51737762G>A	uc010hls.2	+	6	841	c.672G>A	c.(670-672)ACG>ACA	p.T224T	TEX264_uc003dbk.3_Silent_p.T224T|TEX264_uc010hlt.2_Silent_p.T44T|TEX264_uc003dbl.3_Silent_p.T224T|TEX264_uc003dbm.3_Silent_p.T263T	NM_001129884	NP_001123356	Q9Y6I9	TX264_HUMAN	testis expressed 264 precursor	224						extracellular region					0				BRCA - Breast invasive adenocarcinoma(193;8.53e-05)|Kidney(197;0.000594)|KIRC - Kidney renal clear cell carcinoma(197;0.000759)		TGAGTGACACGAGTTCTGTAA	0.607													98	78					0	0	0.000781405	0	0
DNAH1	25981	broad.mit.edu	37	3	52361988	52361988	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:52361988C>T	uc011bef.1	+	6	1090	c.829C>T	c.(829-831)CCG>TCG	p.P277S	DNAH1_uc003ddt.1_Missense_Mutation_p.P277S	NM_015512	NP_056327	Q9P2D7	DYH1_HUMAN	dynein, axonemal, heavy chain 1	277	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement|response to mechanical stimulus	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			large_intestine(3)	3				BRCA - Breast invasive adenocarcinoma(193;2.02e-05)|OV - Ovarian serous cystadenocarcinoma(275;0.000207)|Kidney(197;0.0022)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		GAAACCTGTCCCGGGAAAAGC	0.552													8	16					0	0	0.000274275	0	0
CACNA2D3	55799	broad.mit.edu	37	3	54661864	54661864	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:54661864G>A	uc003dhf.2	+	10	1062	c.1014G>A	c.(1012-1014)TTG>TTA	p.L338L	CACNA2D3_uc011beu.1_RNA|CACNA2D3_uc003dhg.1_Silent_p.L244L|CACNA2D3_uc003dhh.1_RNA|CACNA2D3_uc010hmv.1_Silent_p.L72L	NM_018398	NP_060868	Q8IZS8	CA2D3_HUMAN	calcium channel, voltage-dependent, alpha	338	Extracellular (Potential).|VWFA.					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			large_intestine(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7				KIRC - Kidney renal clear cell carcinoma(284;0.00287)|Kidney(284;0.00327)		TTGGAATGTTGGATATAGCTC	0.408													4	23					0	0	3.59834e-05	0	0
CACNA2D3	55799	broad.mit.edu	37	3	54905576	54905576	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:54905576G>A	uc003dhf.2	+	18	1685	c.1637G>A	c.(1636-1638)GGA>GAA	p.G546E	CACNA2D3_uc011beu.1_RNA|CACNA2D3_uc003dhg.1_Missense_Mutation_p.G452E|CACNA2D3_uc003dhh.1_RNA|CACNA2D3_uc010hmv.1_Missense_Mutation_p.G280E	NM_018398	NP_060868	Q8IZS8	CA2D3_HUMAN	calcium channel, voltage-dependent, alpha	546	Extracellular (Potential).|Cache.					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			large_intestine(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7				KIRC - Kidney renal clear cell carcinoma(284;0.00287)|Kidney(284;0.00327)		TACGAAGAAGGAAAAAAGCGA	0.448													12	50					0	0	0.000308642	0	0
CACNA2D3	55799	broad.mit.edu	37	3	54930890	54930890	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:54930890C>T	uc003dhf.2	+	26	2409	c.2361C>T	c.(2359-2361)TTC>TTT	p.F787F	CACNA2D3_uc003dhg.1_Silent_p.F693F|CACNA2D3_uc003dhh.1_RNA|uc003dhk.1_RNA	NM_018398	NP_060868	Q8IZS8	CA2D3_HUMAN	calcium channel, voltage-dependent, alpha	787	Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			large_intestine(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7				KIRC - Kidney renal clear cell carcinoma(284;0.00287)|Kidney(284;0.00327)		CGATCCCATTCAGCACTGGTG	0.567													7	68					0	0	0.000157383	0	0
ERC2	26059	broad.mit.edu	37	3	56330239	56330239	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:56330239C>T	uc003dhr.1	-	3	1138	c.882G>A	c.(880-882)CAG>CAA	p.Q294Q		NM_015576	NP_056391	O15083	ERC2_HUMAN	cytomatrix protein p110	294	Potential.					cell junction|cytoplasm|cytoskeleton|growth cone|presynaptic membrane|synaptosome	protein binding			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0667)|Kidney(284;0.0873)|OV - Ovarian serous cystadenocarcinoma(275;0.219)		GGGTTTGTTTCTGCGTTTCAA	0.458													75	314					0	0	0.000781405	0	0
PTPRG	5793	broad.mit.edu	37	3	62180762	62180762	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:62180762C>T	uc003dlb.2	+	10	1964	c.1245C>T	c.(1243-1245)CCC>CCT	p.P415P	PTPRG_uc003dlc.2_Silent_p.P415P	NM_002841	NP_002832	P23470	PTPRG_HUMAN	protein tyrosine phosphatase, receptor type, G	415	Fibronectin type-III.|Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	identical protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(5)|lung(2)	7				BRCA - Breast invasive adenocarcinoma(55;0.000376)|KIRC - Kidney renal clear cell carcinoma(10;0.0499)|Kidney(10;0.065)		ATGTCTCACCCGATAGCCTTT	0.502													46	46					0	0	0.000781405	0	0
ATXN7	6314	broad.mit.edu	37	3	63975917	63975917	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:63975917C>T	uc003dlw.3	+	10	1980	c.1427C>T	c.(1426-1428)TCT>TTT	p.S476F	ATXN7_uc003dlv.2_Missense_Mutation_p.S476F|ATXN7_uc010hnv.2_Missense_Mutation_p.S476F|ATXN7_uc011bfn.1_Missense_Mutation_p.S331F	NM_000333	NP_000324	O15265	ATX7_HUMAN	ataxin 7 isoform a	476	Pro-rich.				cell death|histone deubiquitination|nucleus organization|regulation of transcription, DNA-dependent|transcription, DNA-dependent|visual perception	cytoplasm|nuclear matrix|nucleolus	protein binding|zinc ion binding				0		Prostate(884;0.0181)		BRCA - Breast invasive adenocarcinoma(55;0.000614)|KIRC - Kidney renal clear cell carcinoma(15;0.00294)|Kidney(15;0.00305)		GTCCATGAATCTCCACACCCT	0.567													7	37					0	0	0.000157383	0	0
LRIG1	26018	broad.mit.edu	37	3	66431917	66431917	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:66431917C>T	uc003dmx.2	-	17	2770	c.2756G>A	c.(2755-2757)GGG>GAG	p.G919E	SLC25A26_uc011bft.1_Intron|LRIG1_uc011bfu.1_Missense_Mutation_p.G539E|LRIG1_uc003dmw.2_Missense_Mutation_p.G585E|LRIG1_uc010hnz.2_Missense_Mutation_p.G635E|LRIG1_uc010hoa.2_Missense_Mutation_p.G896E	NM_015541	NP_056356	Q96JA1	LRIG1_HUMAN	leucine-rich repeats and immunoglobulin-like	919	Cytoplasmic (Potential).					integral to membrane				skin(3)|ovary(2)	5		Lung NSC(201;0.0101)		BRCA - Breast invasive adenocarcinoma(55;0.00047)		CTTATGTGGCCCAGGTGTCCC	0.507													11	61					0	0	0.000151284	0	0
EPHA6	285220	broad.mit.edu	37	3	97467475	97467475	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:97467475G>A	uc010how.1	+	18	3366	c.3323G>A	c.(3322-3324)CGA>CAA	p.R1108Q		NM_001080448	NP_001073917	Q9UF33	EPHA6_HUMAN	EPH receptor A6 isoform a	1013	SAM.|Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			stomach(5)|lung(4)|central_nervous_system(3)|breast(1)|skin(1)|ovary(1)|kidney(1)	16						CACCAGAGACGAATAGTCAGC	0.313													18	25					0	0	0.000229342	0	0
OR5K4	403278	broad.mit.edu	37	3	98073124	98073124	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:98073124C>T	uc011bgv.1	+	1	427	c.427C>T	c.(427-429)CGG>TGG	p.R143W		NM_001005517	NP_001005517	A6NMS3	OR5K4_HUMAN	olfactory receptor, family 5, subfamily K,	143	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1						GCTCTGCATTCGGATGACCAC	0.478													9	42					0	0	0.000442599	0	0
SENP7	57337	broad.mit.edu	37	3	101212726	101212726	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:101212726G>A	uc003dut.2	-	3	288	c.177C>T	c.(175-177)CTC>CTT	p.L59L	SENP7_uc003duu.2_Silent_p.L59L|SENP7_uc003duv.2_Silent_p.L26L|SENP7_uc003duw.2_Silent_p.L59L|SENP7_uc003dux.2_Silent_p.L26L	NM_020654	NP_065705	Q9BQF6	SENP7_HUMAN	sentrin/SUMO-specific protease 7 isoform 1	59					proteolysis	nucleus	cysteine-type peptidase activity			ovary(3)|lung(2)	5						CCTGCAAAGGGAGAGTCCAGC	0.303													28	82					0	0	0.000339439	0	0
ZPLD1	131368	broad.mit.edu	37	3	102176628	102176628	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:102176628C>T	uc003dvs.1	+	12	1395	c.513C>T	c.(511-513)TCC>TCT	p.S171S	ZPLD1_uc003dvt.1_Silent_p.S187S|ZPLD1_uc011bhg.1_Silent_p.S171S	NM_175056	NP_778226	Q8TCW7	ZPLD1_HUMAN	zona pellucida-like domain containing 1	171	ZP.|Extracellular (Potential).					integral to membrane				ovary(2)|skin(2)|central_nervous_system(1)	5						GTTTTAGGTCCTCAGCGGCTA	0.363													45	148					0	0	0.000781405	0	0
MYH15	22989	broad.mit.edu	37	3	108183613	108183613	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:108183613C>T	uc003dxa.1	-	16	1720	c.1663G>A	c.(1663-1665)GCT>ACT	p.A555T		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15	555	Myosin head-like.					myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						AGGTCTGTAGCCTTAGGAAAC	0.423													5	48					0	0	3.59834e-05	0	0
DZIP3	9666	broad.mit.edu	37	3	108351803	108351803	+	Missense_Mutation	SNP	C	T	T	rs147130794		TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:108351803C>T	uc003dxd.2	+	9	1122	c.700C>T	c.(700-702)CTT>TTT	p.L234F	DZIP3_uc003dxf.1_Missense_Mutation_p.L234F|DZIP3_uc011bhm.1_Intron|DZIP3_uc003dxe.1_Missense_Mutation_p.L234F|DZIP3_uc003dxg.1_5'Flank	NM_014648	NP_055463	Q86Y13	DZIP3_HUMAN	DAZ interacting protein 3, zinc finger	234					protein polyubiquitination	cytoplasm	polyubiquitin binding|RNA binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2						AATCTAGGATCTTCTTAATAA	0.294													28	113					0	0	0.000147802	0	0
KIAA2018	205717	broad.mit.edu	37	3	113374068	113374068	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:113374068G>A	uc003eam.2	-	7	6872	c.6461C>T	c.(6460-6462)TCA>TTA	p.S2154L	KIAA2018_uc003eal.2_Missense_Mutation_p.S2098L	NM_001009899	NP_001009899	Q68DE3	K2018_HUMAN	hypothetical protein LOC205717	2154					regulation of transcription, DNA-dependent	membrane|nucleus	calcium ion binding|DNA binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity			skin(2)|ovary(1)	3						AGATAAAATTGATCCAAATCG	0.403													9	36					0	0	0.000442599	0	0
FSTL1	11167	broad.mit.edu	37	3	120169561	120169561	+	Silent	SNP	C	G	G			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:120169561C>G	uc003eds.2	-	2	208	c.33G>C	c.(31-33)GCG>GCC	p.A11A	FSTL1_uc011bjh.1_Silent_p.A11A|FSTL1_uc010hrb.2_Silent_p.A11A	NM_007085	NP_009016	Q12841	FSTL1_HUMAN	follistatin-like 1 precursor	11					BMP signaling pathway	extracellular space	calcium ion binding|heparin binding			central_nervous_system(1)	1				GBM - Glioblastoma multiforme(114;0.189)		CCGCCACCAGCGCGAGCGCGA	0.721													5	5					0	0	0.000602214	0	0
STXBP5L	9515	broad.mit.edu	37	3	120876361	120876361	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:120876361C>T	uc003eec.3	+	9	904	c.764C>T	c.(763-765)TCA>TTA	p.S255L	STXBP5L_uc011bji.1_Missense_Mutation_p.S255L	NM_014980	NP_055795	Q9Y2K9	STB5L_HUMAN	syntaxin binding protein 5-like	255	WD 5.				exocytosis|protein transport	cytoplasm|integral to membrane|plasma membrane				ovary(7)|skin(2)	9				GBM - Glioblastoma multiforme(114;0.0694)		GCTATTCATTCAATTGATTGG	0.358													6	40					0	0	8.12818e-05	0	0
POLQ	10721	broad.mit.edu	37	3	121208690	121208690	+	Missense_Mutation	SNP	A	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:121208690A>T	uc003eee.3	-	16	3217	c.3088T>A	c.(3088-3090)TTC>ATC	p.F1030I	POLQ_uc003eed.2_Missense_Mutation_p.F202I	NM_199420	NP_955452	O75417	DPOLQ_HUMAN	DNA polymerase theta	1030					DNA repair|DNA replication	nucleoplasm	ATP binding|ATP-dependent helicase activity|damaged DNA binding|DNA-directed DNA polymerase activity|single-stranded DNA-dependent ATPase activity			ovary(4)|breast(3)|lung(2)|upper_aerodigestive_tract(1)|skin(1)	11				GBM - Glioblastoma multiforme(114;0.0915)		TCTGAATTGAAATTCAAAGGT	0.413								DNA_polymerases_(catalytic_subunits)					33	93					0	0	0.000409698	0	0
CASR	846	broad.mit.edu	37	3	121973162	121973162	+	Silent	SNP	T	C	C			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:121973162T>C	uc003eev.3	+	2	498	c.126T>C	c.(124-126)TTT>TTC	p.F42F	CASR_uc003eew.3_Silent_p.F42F	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	42	Extracellular (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	CTATTCATTTTGGAGTAGCAG	0.507													49	39					0	0	0.000781405	0	0
ITGB5	3693	broad.mit.edu	37	3	124567289	124567289	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:124567289G>A	uc003eho.2	-	4	775	c.478C>T	c.(478-480)CTG>TTG	p.L160L		NM_002213	NP_002204	P18084	ITB5_HUMAN	integrin, beta 5 precursor	160	VWFA.|Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|multicellular organismal development|muscle contraction	integrin complex	receptor activity			skin(2)	2				GBM - Glioblastoma multiforme(114;0.163)		TTGGTGCCCAGGCTCCGGATA	0.532													23	76					0	0	0.00047179	0	0
OSBPL11	114885	broad.mit.edu	37	3	125266279	125266279	+	Silent	SNP	G	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:125266279G>T	uc003eic.2	-	10	2549	c.1812C>A	c.(1810-1812)ACC>ACA	p.T604T		NM_022776	NP_073613	Q9BXB4	OSB11_HUMAN	oxysterol binding protein-like 11	604					lipid transport		lipid binding			ovary(3)|breast(1)|kidney(1)	5						AAAATGGCTTGGTATGAAAAG	0.378													8	121					0.000673444	0.00829425	0.000673444	1	0
ZXDC	79364	broad.mit.edu	37	3	126180628	126180628	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:126180628G>A	uc003eiv.2	-	6	1931	c.1877C>T	c.(1876-1878)GCT>GTT	p.A626V	ZXDC_uc010hsh.2_RNA|ZXDC_uc003eix.2_Missense_Mutation_p.A626V	NM_025112	NP_079388	Q2QGD7	ZXDC_HUMAN	ZXD family zinc finger C isoform 1	626	Required for transcriptional activation.				positive regulation of transcription, DNA-dependent	nucleus	C2H2 zinc finger domain binding|identical protein binding|LRR domain binding|nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(114;0.155)		GGAGGTCAAAGCCAGTGGGTC	0.552													10	83					0	0	0.00010058	0	0
GATA2	2624	broad.mit.edu	37	3	128205201	128205201	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:128205201G>A	uc003ekm.3	-	4	675	c.240C>T	c.(238-240)ACC>ACT	p.T80T	GATA2_uc003ekn.3_Silent_p.T80T|GATA2_uc003eko.2_Silent_p.T80T|uc003ekp.2_5'Flank	NM_001145661	NP_001139133	P23769	GATA2_HUMAN	GATA binding protein 2 isoform 1	80					blood coagulation|negative regulation of fat cell differentiation|negative regulation of fat cell proliferation|negative regulation of neural precursor cell proliferation|negative regulation of Notch signaling pathway|phagocytosis|positive regulation of angiogenesis|positive regulation of phagocytosis|positive regulation of transcription from RNA polymerase II promoter	nucleoplasm	C2H2 zinc finger domain binding|chromatin binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding|zinc ion binding			haematopoietic_and_lymphoid_tissue(13)|lung(1)|skin(1)	15				GBM - Glioblastoma multiforme(114;0.173)		TCTGGCCTCCGGTCAGGCGGG	0.647			Mis		AML(CML blast transformation)								4	13					0	0	8.12818e-05	0	0
COL6A6	131873	broad.mit.edu	37	3	130284128	130284128	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:130284128G>A	uc010htl.2	+	3	983	c.952G>A	c.(952-954)GAA>AAA	p.E318K		NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	318	Nonhelical region.|VWFA 2.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						GCTCAGGAAGGAAGTTTTTAG	0.507													12	69					0	0	6.40141e-05	0	0
ATP2C1	27032	broad.mit.edu	37	3	130715608	130715608	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:130715608C>T	uc003enl.2	+	24	2433	c.2211C>T	c.(2209-2211)ATC>ATT	p.I737I	ATP2C1_uc011blg.1_Silent_p.I771I|ATP2C1_uc011blh.1_Silent_p.I732I|ATP2C1_uc011bli.1_Silent_p.I771I|ATP2C1_uc003enk.2_Silent_p.I721I|ATP2C1_uc003enm.2_Silent_p.I737I|ATP2C1_uc003enn.2_Silent_p.I721I|ATP2C1_uc003eno.2_Silent_p.I737I|ATP2C1_uc003enp.2_Silent_p.I737I|ATP2C1_uc003enq.2_Silent_p.I737I|ATP2C1_uc003enr.2_Silent_p.I737I|ATP2C1_uc003ens.2_Silent_p.I737I|ATP2C1_uc003ent.2_Silent_p.I737I|ATP2C1_uc003enu.2_Silent_p.I415I	NM_014382	NP_055197	P98194	AT2C1_HUMAN	calcium-transporting ATPase 2C1 isoform 1a	737	Helical; Name=6; (By similarity).				actin cytoskeleton reorganization|ATP biosynthetic process|calcium-dependent cell-cell adhesion|cellular calcium ion homeostasis|cellular manganese ion homeostasis|epidermis development|Golgi calcium ion homeostasis|Golgi calcium ion transport|positive regulation of I-kappaB kinase/NF-kappaB cascade	Golgi apparatus|Golgi membrane|integral to membrane|trans-Golgi network	ATP binding|ATP binding|calcium ion binding|calcium-transporting ATPase activity|manganese ion binding|manganese-transporting ATPase activity|metal ion binding|signal transducer activity			skin(1)	1					Arsenic trioxide(DB01169)|Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|Methoxyflurane(DB01028)|Miconazole(DB01110)|Sevoflurane(DB01236)	TTTTGTGGATCAATATTATTA	0.368									Hailey-Hailey_disease				17	98					0	0	0.000422831	0	0
TOPBP1	11073	broad.mit.edu	37	3	133356824	133356824	+	Missense_Mutation	SNP	G	C	C			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:133356824G>C	uc003eps.2	-	14	2548	c.2416C>G	c.(2416-2418)CCA>GCA	p.P806A		NM_007027	NP_008958	Q92547	TOPB1_HUMAN	topoisomerase (DNA) II binding protein 1	806					DNA repair|response to ionizing radiation	microtubule organizing center|PML body|spindle pole	DNA binding|protein C-terminus binding			ovary(2)|kidney(2)|skin(1)|lung(1)|pancreas(1)	7						CCTACTGCTGGGGAGGCTGCG	0.483								Other_conserved_DNA_damage_response_genes					4	130					0	0	0.000602214	0	0
AMOTL2	51421	broad.mit.edu	37	3	134086519	134086519	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:134086519G>A	uc003eqf.2	-	3	1152	c.1035C>T	c.(1033-1035)TCC>TCT	p.S345S	AMOTL2_uc003eqg.1_Silent_p.S287S|AMOTL2_uc003eqh.1_Silent_p.S287S|AMOTL2_uc003eqe.1_5'Flank	NM_016201	NP_057285	Q9Y2J4	AMOL2_HUMAN	angiomotin like 2	287										large_intestine(1)	1						GTGGACTGAGGGAGCTCAGGG	0.662													9	15					0	0	0.000274275	0	0
DBR1	51163	broad.mit.edu	37	3	137892381	137892382	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:137892381_137892382GG>TT	uc003erv.2	-	2	420_421	c.284_285CC>AA	c.(283-285)CCC>CAA	p.P95Q	DBR1_uc003eru.2_Missense_Mutation_p.P44Q	NM_016216	NP_057300	Q9UK59	DBR1_HUMAN	debranching enzyme homolog 1	95						nucleus	metal ion binding|RNA lariat debranching enzyme activity				0						AGCCACCATAGGGTAACTCTTG	0.421													16	468					0	0	6.4e-05	0	0
ARMC8	25852	broad.mit.edu	37	3	137956335	137956336	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:137956335_137956336GG>TT	uc003esa.1	+	10	1022_1023	c.655_656GG>TT	c.(655-657)GGA>TTA	p.G219L	ARMC8_uc003erw.2_Missense_Mutation_p.G219L|ARMC8_uc003erx.2_Missense_Mutation_p.G219L|ARMC8_uc003ery.2_Missense_Mutation_p.G191L|ARMC8_uc003erz.2_Missense_Mutation_p.G191L|ARMC8_uc011bmf.1_Missense_Mutation_p.G202L|ARMC8_uc011bmg.1_Missense_Mutation_p.G233L|ARMC8_uc011bmh.1_Missense_Mutation_p.G160L|ARMC8_uc003esb.1_Missense_Mutation_p.G191L|ARMC8_uc003esc.1_5'UTR	NM_015396	NP_056211	Q8IUR7	ARMC8_HUMAN	armadillo repeat containing 8 isoform 2	233	ARM 5.						binding				0						TTTGGTTGATGGAGAATTGTTA	0.347													14	572					0	0	6.4e-05	0	0
ARMC8	25852	broad.mit.edu	37	3	137960791	137960792	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:137960791_137960792CC>AA	uc003esa.1	+	12	1329_1330	c.962_963CC>AA	c.(961-963)CCC>CAA	p.P321Q	ARMC8_uc003erw.2_Missense_Mutation_p.P321Q|ARMC8_uc003erx.2_Missense_Mutation_p.P321Q|ARMC8_uc003ery.2_Missense_Mutation_p.P293Q|ARMC8_uc003erz.2_Missense_Mutation_p.P293Q|ARMC8_uc011bmf.1_Missense_Mutation_p.P304Q|ARMC8_uc011bmg.1_Intron|ARMC8_uc011bmh.1_Missense_Mutation_p.P262Q|ARMC8_uc003esb.1_Missense_Mutation_p.P293Q|ARMC8_uc003esc.1_Missense_Mutation_p.P93Q	NM_015396	NP_056211	Q8IUR7	ARMC8_HUMAN	armadillo repeat containing 8 isoform 2	335	ARM 7.						binding				0						TTCAAGTATCCCAGCTCAGTGA	0.391													12	483					0	0	6.4e-05	0	0
TXNDC6	347736	broad.mit.edu	37	3	138024925	138024926	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:138024925_138024926CC>AA	uc003esg.2	-	8	584_585	c.556_557GG>TT	c.(556-558)GGG>TTG	p.G186L	TXNDC6_uc003esd.1_RNA|TXNDC6_uc010huf.1_Missense_Mutation_p.G101L|TXNDC6_uc003ese.1_Missense_Mutation_p.G125L	NM_178130	NP_835231	Q86XW9	TXND6_HUMAN	thioredoxin domain containing 6	186	NDK.				cell redox homeostasis|CTP biosynthetic process|GTP biosynthetic process|UTP biosynthetic process	cytoplasm|cytoskeleton	ATP binding|nucleoside diphosphate kinase activity			breast(3)|ovary(1)|pancreas(1)	5						AATTTCAAACCCAGCTTCCTGA	0.342													14	496					0	0	6.4e-05	0	0
TXNDC6	347736	broad.mit.edu	37	3	138033207	138033208	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:138033207_138033208GG>TT	uc003esg.2	-	6	454_455	c.426_427CC>AA	c.(424-429)TCCCAT>TCAAAT	p.H143N	TXNDC6_uc003esd.1_RNA|TXNDC6_uc010huf.1_Missense_Mutation_p.H58N|TXNDC6_uc003ese.1_Missense_Mutation_p.H82N	NM_178130	NP_835231	Q86XW9	TXND6_HUMAN	thioredoxin domain containing 6	143					cell redox homeostasis|CTP biosynthetic process|GTP biosynthetic process|UTP biosynthetic process	cytoplasm|cytoskeleton	ATP binding|nucleoside diphosphate kinase activity			breast(3)|ovary(1)|pancreas(1)	5						TTCTTTCCATGGGAAACACATT	0.347													24	675					0	0	6.4e-05	0	0
TXNDC6	347736	broad.mit.edu	37	3	138043757	138043758	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:138043757_138043758GG>TT	uc003esg.2	-	2	76_77	c.48_49CC>AA	c.(46-51)ACCCAA>ACAAAA	p.Q17K	TXNDC6_uc003esd.1_RNA|TXNDC6_uc010huf.1_5'UTR|TXNDC6_uc003ese.1_5'UTR	NM_178130	NP_835231	Q86XW9	TXND6_HUMAN	thioredoxin domain containing 6	17	Thioredoxin.				cell redox homeostasis|CTP biosynthetic process|GTP biosynthetic process|UTP biosynthetic process	cytoplasm|cytoskeleton	ATP binding|nucleoside diphosphate kinase activity			breast(3)|ovary(1)|pancreas(1)	5						CAAAGCTCTTGGGTGCTGATGT	0.376													14	421					0	0	6.4e-05	0	0
CEP70	80321	broad.mit.edu	37	3	138219317	138219318	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:138219317_138219318GG>TT	uc003esl.2	-	15	1658_1659	c.1460_1461CC>AA	c.(1459-1461)CCC>CAA	p.P487Q	CEP70_uc011bmk.1_Missense_Mutation_p.P467Q|CEP70_uc011bml.1_Missense_Mutation_p.P469Q|CEP70_uc011bmm.1_Missense_Mutation_p.P335Q|CEP70_uc003esm.2_Missense_Mutation_p.P487Q	NM_024491	NP_077817	Q8NHQ1	CEP70_HUMAN	centrosomal protein 70 kDa	487	TPR.				G2/M transition of mitotic cell cycle	centrosome|cytosol	protein binding			skin(1)	1						CATTCATTCGGGGATAGACTCC	0.371													14	666					0	0	6.4e-05	0	0
PIK3CB	5291	broad.mit.edu	37	3	138374352	138374353	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:138374352_138374353CC>AA	uc011bmq.1	-	22	3091_3092	c.3091_3092GG>TT	c.(3091-3093)GGG>TTG	p.G1031L	PIK3CB_uc011bmn.1_Missense_Mutation_p.G543L|PIK3CB_uc011bmo.1_Missense_Mutation_p.G482L|PIK3CB_uc011bmp.1_Missense_Mutation_p.G618L|PIK3CB_uc003est.1_RNA	NM_006219	NP_006210	P42338	PK3CB_HUMAN	catalytic phosphatidylinositol 3-kinase beta	1031	PI3K/PI4K.				activation of MAPK activity|chemotaxis|fibroblast growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|T cell receptor signaling pathway	phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity			breast(2)|ovary(1)|lung(1)|skin(1)	5						TTCACTCTTCCCTAATGCAAGA	0.406													13	402					0	0	6.4e-05	0	0
PIK3CB	5291	broad.mit.edu	37	3	138426102	138426103	+	Nonsense_Mutation	DNP	CC	AA	AA			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:138426102_138426103CC>AA	uc011bmq.1	-	9	1428_1429	c.1428_1429GG>TT	c.(1426-1431)ATGGGA>ATTTGA	p.476_477MG>I*	PIK3CB_uc011bmn.1_Nonsense_Mutation_p.5_6MG>I*|PIK3CB_uc011bmo.1_Intron|PIK3CB_uc011bmp.1_Nonsense_Mutation_p.80_81MG>I*	NM_006219	NP_006210	P42338	PK3CB_HUMAN	catalytic phosphatidylinositol 3-kinase beta	476_477					activation of MAPK activity|chemotaxis|fibroblast growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|T cell receptor signaling pathway	phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity			breast(2)|ovary(1)|lung(1)|skin(1)	5						TGAACAGTTCCCATTGGATTCA	0.302													17	680					0	0	6.4e-05	0	0
PIK3CB	5291	broad.mit.edu	37	3	138461467	138461468	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:138461467_138461468GG>TT	uc011bmq.1	-	3	553_554	c.553_554CC>AA	c.(553-555)CCT>AAT	p.P185N		NM_006219	NP_006210	P42338	PK3CB_HUMAN	catalytic phosphatidylinositol 3-kinase beta	185	PI3K-RBD.				activation of MAPK activity|chemotaxis|fibroblast growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|T cell receptor signaling pathway	phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity			breast(2)|ovary(1)|lung(1)|skin(1)	5						TAAGTTTTCAGGGATGGATGGT	0.366													25	595					0	0	6.4e-05	0	0
PRR23B	389151	broad.mit.edu	37	3	138739223	138739223	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:138739223C>T	uc003esy.1	-	1	546	c.281G>A	c.(280-282)GGA>GAA	p.G94E		NM_001013650	NP_001013672	Q6ZRT6	PR23B_HUMAN	proline rich 23B	94										breast(1)	1						GAGGGTGTGTCCACCGAGAGA	0.662													27	21					0	0	0.000184323	0	0
PRR23C	389152	broad.mit.edu	37	3	138763116	138763116	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:138763116C>T	uc011bmt.1	-	1	619	c.347G>A	c.(346-348)GGC>GAC	p.G116D		NM_001134657	NP_001128129	Q6ZRP0	PR23C_HUMAN	proline rich 23C	116										skin(1)	1						AGACCAGTCGCCCTGCGCTCC	0.632													4	4					0	0	3.59834e-05	0	0
COPB2	9276	broad.mit.edu	37	3	139094319	139094319	+	Missense_Mutation	SNP	C	G	G			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:139094319C>G	uc003etf.3	-	6	772	c.642G>C	c.(640-642)TGG>TGC	p.W214C	COPB2_uc011bmv.1_Missense_Mutation_p.W185C|COPB2_uc010hui.2_Missense_Mutation_p.W185C|COPB2_uc011bmw.1_Missense_Mutation_p.W214C	NM_004766	NP_004757	P35606	COPB2_HUMAN	coatomer protein complex, subunit beta 2 (beta	214	WD 5.				COPI coating of Golgi vesicle|intra-Golgi vesicle-mediated transport|intracellular protein transport|retrograde vesicle-mediated transport, Golgi to ER	COPI vesicle coat|cytosol	protein binding|structural molecule activity			ovary(2)	2						CCTGATAATCCCATATTTTAA	0.378													6	78					0	0	3.59834e-05	0	0
CLSTN2	64084	broad.mit.edu	37	3	140282839	140282839	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:140282839C>T	uc003etn.2	+	16	2709	c.2519C>T	c.(2518-2520)TCC>TTC	p.S840F		NM_022131	NP_071414	Q9H4D0	CSTN2_HUMAN	calsyntenin 2 precursor	840	Helical; (Potential).				homophilic cell adhesion	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|plasma membrane	calcium ion binding			skin(3)|large_intestine(2)|pancreas(1)|central_nervous_system(1)	7						ATCATCATCTCCGTGTGCATG	0.537										HNSCC(16;0.037)			23	159					0	0	0.000375601	0	0
TM4SF4	7104	broad.mit.edu	37	3	149192792	149192792	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:149192792C>T	uc003exd.1	+	1	359	c.128C>T	c.(127-129)TCC>TTC	p.S43F		NM_004617	NP_004608	P48230	T4S4_HUMAN	transmembrane 4 superfamily member 4	43	Extracellular (Potential).					integral to membrane					0			LUSC - Lung squamous cell carcinoma(72;0.0378)|Lung(72;0.048)			GACCACCTTTCCCAAGAGATC	0.473													5	48					0	0	0.000157383	0	0
MED12L	116931	broad.mit.edu	37	3	150845620	150845620	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:150845620C>T	uc003eyp.2	+	4	443	c.405C>T	c.(403-405)ATC>ATT	p.I135I	MED12L_uc011bnz.1_Silent_p.I135I|MED12L_uc003eym.1_Silent_p.I135I|MED12L_uc003eyn.2_Silent_p.I135I|MED12L_uc003eyo.2_Silent_p.I135I	NM_053002	NP_443728	Q86YW9	MD12L_HUMAN	mediator of RNA polymerase II transcription,	135					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	mediator complex				ovary(4)|large_intestine(1)|central_nervous_system(1)|skin(1)	7			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			AGGTTCCTATCCTTAGTAAAA	0.338													18	34					0	0	0.000958276	0	0
IGSF10	285313	broad.mit.edu	37	3	151155894	151155894	+	Missense_Mutation	SNP	C	G	G			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:151155894C>G	uc011bod.1	-	6	6455	c.6455G>C	c.(6454-6456)AGA>ACA	p.R2152T	IGSF10_uc011bob.1_Missense_Mutation_p.R179T|IGSF10_uc011boc.1_Missense_Mutation_p.R131T	NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	immunoglobulin superfamily, member 10 precursor	2152	Ig-like C2-type 8.				cell differentiation|multicellular organismal development|ossification	extracellular region				skin(7)|ovary(5)|central_nervous_system(1)	13			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			AGCTTTGATTCTCTTGTTGGT	0.453													3	62					0	0	6.4e-05	0	0
GPR149	344758	broad.mit.edu	37	3	154055716	154055716	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:154055716C>T	uc003faa.2	-	4	2068	c.1968G>A	c.(1966-1968)AGG>AGA	p.R656R		NM_001038705	NP_001033794	Q86SP6	GP149_HUMAN	G protein-coupled receptor 149	656	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(6)	6			LUSC - Lung squamous cell carcinoma(72;0.114)|Lung(72;0.173)			TGTTTTCTTTCCTGGAGTAAC	0.418													24	74					0	0	0.000295444	0	0
SCHIP1	29970	broad.mit.edu	37	3	159605586	159605586	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:159605586G>A	uc003fcs.1	+	5	1152	c.1086G>A	c.(1084-1086)AAG>AAA	p.K362K	SCHIP1_uc003fcq.1_Silent_p.K438K|SCHIP1_uc003fcr.1_Silent_p.K351K|SCHIP1_uc003fct.1_Silent_p.K349K|SCHIP1_uc010hvz.1_Silent_p.K322K|SCHIP1_uc003fcu.1_Silent_p.K119K|SCHIP1_uc003fcv.1_Silent_p.K135K	NM_014575	NP_055390	Q9P0W5	SCHI1_HUMAN	schwannomin interacting protein 1	362						cytoplasm	identical protein binding|protein binding			ovary(1)|central_nervous_system(1)	2			LUSC - Lung squamous cell carcinoma(72;0.00523)|Lung(72;0.00534)			CAAGGCAAAAGAAATTGCAAG	0.453													33	135					0	0	0.000409698	0	0
SI	6476	broad.mit.edu	37	3	164709985	164709985	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:164709985G>A	uc003fei.2	-	43	5025	c.4963C>T	c.(4963-4965)CGG>TGG	p.R1655W		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	1655	Sucrase.|Lumenal.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	TCAAACCACCGAGCATTGGGG	0.343										HNSCC(35;0.089)			8	64					0	0	0.00010058	0	0
ZBBX	79740	broad.mit.edu	37	3	167031813	167031813	+	Missense_Mutation	SNP	A	C	C			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:167031813A>C	uc003fep.2	-	16	1689	c.1366T>G	c.(1366-1368)TTA>GTA	p.L456V	ZBBX_uc011bpc.1_Missense_Mutation_p.L456V|ZBBX_uc003feq.2_Missense_Mutation_p.L427V	NM_024687	NP_078963	A8MT70	ZBBX_HUMAN	zinc finger, B-box domain containing	456						intracellular	zinc ion binding			ovary(2)	2						CAAAGATTTAAGAAGTCTCTC	0.313													28	61					0	0	0.000279167	0	0
MECOM	2122	broad.mit.edu	37	3	168807855	168807855	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:168807855C>T	uc003ffi.3	-	14	3039	c.2770G>A	c.(2770-2772)GGA>AGA	p.G924R	MECOM_uc010hwk.1_Missense_Mutation_p.G938R|MECOM_uc003ffj.3_Missense_Mutation_p.G989R|MECOM_uc011bpi.1_Missense_Mutation_p.G916R|MECOM_uc003ffn.3_Missense_Mutation_p.G924R|MECOM_uc003ffk.2_Missense_Mutation_p.G915R|MECOM_uc003ffl.2_Missense_Mutation_p.G1075R|MECOM_uc011bpj.1_Missense_Mutation_p.G1112R|MECOM_uc011bpk.1_Missense_Mutation_p.G914R	NM_005241	NP_005232	Q03112	EVI1_HUMAN	MDS1 and EVI1 complex locus isoform b	924	Asp/Glu-rich (acidic).				apoptosis|cell differentiation|hemopoietic stem cell proliferation|negative regulation of JNK cascade|negative regulation of programmed cell death|negative regulation of transcription, DNA-dependent|regulation of cell cycle	nuclear speck	DNA binding|protein binding|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(5)|skin(5)|upper_aerodigestive_tract(1)|central_nervous_system(1)|ovary(1)|pancreas(1)	14						TCAGGGTTTCCTTCATGTAAA	0.423													5	61					0	0	0.000602214	0	0
SAMD7	344658	broad.mit.edu	37	3	169656285	169656285	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:169656285G>A	uc003fgd.2	+	9	1599	c.1332G>A	c.(1330-1332)ATG>ATA	p.M444I	SAMD7_uc003fge.2_Missense_Mutation_p.M444I|SAMD7_uc011bpo.1_Missense_Mutation_p.M345I	NM_182610	NP_872416	Q7Z3H4	SAMD7_HUMAN	sterile alpha motif domain containing 7	444										skin(1)	1	all_cancers(22;1.55e-22)|all_epithelial(15;2.41e-27)|all_lung(20;3.52e-17)|Lung NSC(18;1.44e-16)|Ovarian(172;0.000337)|Breast(254;0.169)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.0106)			GAGGTAGTATGAGAAACTAAA	0.408													5	15					0	0	8.12818e-05	0	0
SENP2	59343	broad.mit.edu	37	3	185341849	185341850	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:185341849_185341850CC>AA	uc003fpn.2	+	15	1761_1762	c.1590_1591CC>AA	c.(1588-1593)ACCCAT>ACAAAT	p.H531N	SENP2_uc011brv.1_Missense_Mutation_p.H521N|SENP2_uc011brw.1_Missense_Mutation_p.H344N	NM_021627	NP_067640	Q9HC62	SENP2_HUMAN	SUMO1/sentrin/SMT3 specific protease 2	531	Protease.				mRNA transport|protein desumoylation|protein transport|proteolysis|regulation of Wnt receptor signaling pathway|transmembrane transport|Wnt receptor signaling pathway	cytoplasm|nuclear membrane|nuclear pore	protein binding|SUMO-specific protease activity				0	all_cancers(143;1.28e-10)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(80;1.31e-21)			TAGAGTGGACCCATCACAGCAT	0.356													15	591					0	0	6.4e-05	0	0
TRA2B	6434	broad.mit.edu	37	3	185641735	185641736	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:185641735_185641736CC>AA	uc003fpv.2	-	4	646_647	c.370_371GG>TT	c.(370-372)GGG>TTG	p.G124L	TRA2B_uc003fpt.2_RNA|TRA2B_uc003fpu.2_RNA|TRA2B_uc010hym.2_Missense_Mutation_p.G24L|TRA2B_uc003fpw.2_Missense_Mutation_p.G124L	NM_004593	NP_004584	P62995	TRA2B_HUMAN	splicing factor, arginine/serine-rich 10	124	RRM.				nuclear mRNA splicing, via spliceosome	nucleus	nucleotide binding|protein binding|RNA binding			ovary(2)	2						CAAGCTCAGCCCAAATACTCCA	0.371													14	487					0	0	6.4e-05	0	0
KNG1	3827	broad.mit.edu	37	3	186445073	186445073	+	Silent	SNP	G	A	A	rs142183659		TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:186445073G>A	uc011bsa.1	+	5	824	c.612G>A	c.(610-612)ACG>ACA	p.T204T	KNG1_uc003fqr.2_Silent_p.T204T	NM_001102416	NP_001095886	P01042	KNG1_HUMAN	kininogen 1 isoform 1	204	Cystatin 2.				blood coagulation, intrinsic pathway|elevation of cytosolic calcium ion concentration|inflammatory response|negative regulation of blood coagulation|negative regulation of cell adhesion|platelet activation|platelet degranulation|positive regulation of apoptosis|positive regulation of renal sodium excretion|positive regulation of urine volume|smooth muscle contraction|vasodilation	extracellular space|plasma membrane|platelet alpha granule lumen	cysteine-type endopeptidase inhibitor activity|heparin binding|receptor binding|zinc ion binding			skin(1)	1	all_cancers(143;8.96e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;4.12e-20)	GBM - Glioblastoma multiforme(93;0.0798)	Ouabain(DB01092)	TTGTGCAAACGAATTGTTCCA	0.348													20	118					0	0	0.000295444	0	0
MASP1	5648	broad.mit.edu	37	3	186980348	186980348	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:186980348G>A	uc003frh.1	-	3	730	c.398C>T	c.(397-399)GCC>GTC	p.A133V	MASP1_uc003fri.2_Missense_Mutation_p.A133V|MASP1_uc003frj.2_Missense_Mutation_p.A102V|MASP1_uc003frk.1_Missense_Mutation_p.A133V|MASP1_uc011bse.1_Missense_Mutation_p.A107V	NM_001879	NP_001870	P48740	MASP1_HUMAN	mannan-binding lectin serine protease 1 isoform	133	Interaction with FCN2.|Interaction with MBL2.|Homodimerization (By similarity).|CUB 1.				complement activation, lectin pathway|negative regulation of complement activation|proteolysis	extracellular space	calcium ion binding|calcium-dependent protein binding|protein binding|protein homodimerization activity|serine-type endopeptidase activity			ovary(2)|breast(1)|liver(1)	4	all_cancers(143;5.33e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;3.49e-18)	GBM - Glioblastoma multiforme(93;0.0366)		CATGTAGTGGGCATCAAAGCC	0.517													13	18					0	0	0.000151284	0	0
CPN2	1370	broad.mit.edu	37	3	194061932	194061932	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr3:194061932G>A	uc003fts.2	-	2	1590	c.1500C>T	c.(1498-1500)CGC>CGT	p.R500R		NM_001080513	NP_001073982	P22792	CPN2_HUMAN	carboxypeptidase N, polypeptide 2	500					protein stabilization	extracellular region	enzyme regulator activity			ovary(5)	5	all_cancers(143;5.31e-09)|Ovarian(172;0.0634)		OV - Ovarian serous cystadenocarcinoma(49;2.2e-17)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;4.65e-05)		CGTTCAGCCAGCGACACTGGG	0.652													9	11					0	0	0.000274275	0	0
WHSC1	7468	broad.mit.edu	37	4	1906038	1906038	+	Silent	SNP	G	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr4:1906038G>T	uc003gdz.3	+	3	869	c.693G>T	c.(691-693)TCG>TCT	p.S231S	WHSC1_uc003geb.3_Silent_p.S231S|WHSC1_uc003gec.3_Silent_p.S231S|WHSC1_uc003ged.3_Silent_p.S231S|WHSC1_uc003gee.3_RNA|WHSC1_uc003gef.3_RNA|WHSC1_uc003gdx.2_Silent_p.S231S|WHSC1_uc003gdy.1_Silent_p.S231S|WHSC1_uc010icd.1_Silent_p.S231S|WHSC1_uc003gea.1_Silent_p.S231S|WHSC1_uc010ice.1_Silent_p.S231S|WHSC1_uc003geg.1_Silent_p.S231S|WHSC1_uc003geh.1_Silent_p.S231S	NM_001042424	NP_001035889	O96028	NSD2_HUMAN	Wolf-Hirschhorn syndrome candidate 1 protein	231	PWWP 1.				anatomical structure morphogenesis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|cytoplasm|nuclear membrane|nucleolus	DNA binding|histone-lysine N-methyltransferase activity|zinc ion binding			ovary(3)|lung(3)|skin(2)|pancreas(1)	9		all_epithelial(65;1.34e-05)	OV - Ovarian serous cystadenocarcinoma(23;0.00606)	STAD - Stomach adenocarcinoma(129;0.232)		CCAAAGTGTCGGGTTACCCTT	0.433			T	IGH@	MM								8	249					0.000673444	0.00829425	0.000673444	1	0
ZFYVE28	57732	broad.mit.edu	37	4	2306825	2306825	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr4:2306825G>A	uc003gex.1	-	8	1561	c.1242C>T	c.(1240-1242)GCC>GCT	p.A414A	ZFYVE28_uc011bvk.1_Silent_p.A344A|ZFYVE28_uc011bvl.1_Silent_p.A384A|ZFYVE28_uc003gew.1_Silent_p.A300A	NM_020972	NP_066023	Q9HCC9	LST2_HUMAN	zinc finger, FYVE domain containing 28	414					negative regulation of epidermal growth factor receptor activity	cytosol|early endosome membrane	metal ion binding|phosphatidylinositol-3-phosphate binding|protein binding			skin(2)|ovary(1)	3						ACTCGGGCCTGGCCAGGGCTT	0.697													8	68					0	0	0.000157383	0	0
HTT	3064	broad.mit.edu	37	4	3148573	3148574	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr4:3148573_3148574GG>TT	uc011bvq.1	+	26	3344_3345	c.3199_3200GG>TT	c.(3199-3201)GGG>TTG	p.G1067L		NM_002111	NP_002102	P42858	HD_HUMAN	huntingtin	1065					establishment of mitotic spindle orientation|Golgi organization|retrograde vesicle-mediated transport, Golgi to ER|vesicle transport along microtubule	autophagic vacuole|axon|cytoplasmic vesicle membrane|cytosol|dendrite|endoplasmic reticulum|Golgi apparatus|late endosome|membrane fraction|nucleus|protein complex	beta-tubulin binding|dynactin binding|dynein intermediate chain binding|p53 binding|transcription factor binding			skin(2)|ovary(1)|lung(1)	4		all_epithelial(65;0.18)		UCEC - Uterine corpus endometrioid carcinoma (64;0.187)		CTGTACCGTTGGGATGGCCACA	0.465													21	785					0	0	6.4e-05	0	0
HTT	3064	broad.mit.edu	37	4	3148596	3148597	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr4:3148596_3148597CC>AA	uc011bvq.1	+	26	3367_3368	c.3222_3223CC>AA	c.(3220-3225)ACCCTG>ACAATG	p.L1075M		NM_002111	NP_002102	P42858	HD_HUMAN	huntingtin	1073					establishment of mitotic spindle orientation|Golgi organization|retrograde vesicle-mediated transport, Golgi to ER|vesicle transport along microtubule	autophagic vacuole|axon|cytoplasmic vesicle membrane|cytosol|dendrite|endoplasmic reticulum|Golgi apparatus|late endosome|membrane fraction|nucleus|protein complex	beta-tubulin binding|dynactin binding|dynein intermediate chain binding|p53 binding|transcription factor binding			skin(2)|ovary(1)|lung(1)	4		all_epithelial(65;0.18)		UCEC - Uterine corpus endometrioid carcinoma (64;0.187)		TGATTCTGACCCTGCTCTCGTC	0.49													16	830					0	0	6.4e-05	0	0
TBC1D14	57533	broad.mit.edu	37	4	6925404	6925405	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr4:6925404_6925405CC>TT	uc011bwg.1	+	2	367_368	c.288_289CC>TT	c.(286-291)ATCCCC>ATTTCC	p.P97S	TBC1D14_uc003gjs.3_Missense_Mutation_p.P97S	NM_001113361	NP_001106832	Q9P2M4	TBC14_HUMAN	TBC1 domain family, member 14 isoform a	97						intracellular	Rab GTPase activator activity			ovary(1)|pancreas(1)	2						CCGACCTCATCCCCGAGCGGGC	0.668													11	88					0	0	6.4e-05	0	0
CLNK	116449	broad.mit.edu	37	4	10515113	10515113	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr4:10515113G>A	uc003gmo.3	-	16	1018	c.881C>T	c.(880-882)CCT>CTT	p.P294L		NM_052964	NP_443196	Q7Z7G1	CLNK_HUMAN	mast cell immunoreceptor signal transducer	294					immune response|intracellular signal transduction	intracellular	SH3/SH2 adaptor activity			ovary(1)	1						TTTGGGGAAAGGTGGTCTCCA	0.493													6	28					0	0	0.000157383	0	0
CC2D2A	57545	broad.mit.edu	37	4	15512933	15512933	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr4:15512933G>A	uc010idv.2	+	9	849	c.604G>A	c.(604-606)GAA>AAA	p.E202K	CC2D2A_uc003gnx.2_Missense_Mutation_p.E153K|CC2D2A_uc003gnu.2_Missense_Mutation_p.E202K|CC2D2A_uc003gnv.2_Missense_Mutation_p.E202K	NM_001080522	NP_001073991	Q9P2K1	C2D2A_HUMAN	coiled-coil and C2 domain containing 2A isoform	202					cell projection organization	cilium|microtubule basal body				pancreas(2)|ovary(1)	3						CTTTGATCCCGAACCAGAAGG	0.463													8	10					0	0	0.000157383	0	0
PROM1	8842	broad.mit.edu	37	4	16026888	16026889	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr4:16026888_16026889CG>AT	uc003goo.2	-	5	768_769	c.556_557CG>AT	c.(556-558)CGG>ATG	p.R186M	PROM1_uc003gor.2_Missense_Mutation_p.R186M|PROM1_uc003gos.2_Missense_Mutation_p.R177M|PROM1_uc003got.2_Missense_Mutation_p.R186M|PROM1_uc003gou.2_Missense_Mutation_p.R177M|PROM1_uc003gop.2_Missense_Mutation_p.R177M|PROM1_uc003goq.3_Missense_Mutation_p.R177M|PROM1_uc010iec.1_Missense_Mutation_p.R64M	NM_006017	NP_006008	O43490	PROM1_HUMAN	prominin 1 isoform 1	186	Extracellular (Potential).				camera-type eye photoreceptor cell differentiation|photoreceptor cell maintenance|retina layer formation	apical plasma membrane|cell surface|integral to plasma membrane|microvillus membrane|photoreceptor outer segment membrane|plasma membrane	beta-actinin binding|cadherin binding			ovary(3)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)|central_nervous_system(1)	7						CCTTTTGATCCGGGTTCTTACC	0.446													6	130					0	0	6.4e-05	0	0
PPARGC1A	10891	broad.mit.edu	37	4	23816050	23816050	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr4:23816050G>A	uc003gqs.2	-	8	1176	c.1056C>T	c.(1054-1056)TCC>TCT	p.S352S	PPARGC1A_uc003gqt.2_RNA|PPARGC1A_uc011bxp.1_RNA|PPARGC1A_uc010ier.1_RNA	NM_013261	NP_037393	Q9UBK2	PRGC1_HUMAN	peroxisome proliferator-activated receptor	352					androgen receptor signaling pathway|brown fat cell differentiation|cellular glucose homeostasis|digestion|fatty acid oxidation|gluconeogenesis|mitochondrion organization|mRNA processing|neuron death|positive regulation of fatty acid oxidation|positive regulation of gluconeogenesis|positive regulation of histone acetylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|protein complex assembly|protein stabilization|response to muscle activity|response to starvation|RNA splicing|temperature homeostasis|transcription initiation from RNA polymerase II promoter	DNA-directed RNA polymerase II, core complex	androgen receptor binding|DNA binding|ligand-dependent nuclear receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|nucleotide binding|RNA binding|RNA polymerase II transcription cofactor activity|transcription factor binding			ovary(2)|lung(2)|kidney(2)|skin(2)	8		Breast(46;0.0503)				CATACAACTCGGATTGCTCCG	0.537													11	85					0	0	6.40141e-05	0	0
SLC34A2	10568	broad.mit.edu	37	4	25673336	25673336	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr4:25673336C>T	uc003grr.2	+	9	1122	c.1041C>T	c.(1039-1041)ATC>ATT	p.I347I	SLC34A2_uc003grs.2_Silent_p.I346I|SLC34A2_uc010iev.2_Silent_p.I346I	NM_006424	NP_006415	O95436	NPT2B_HUMAN	solute carrier family 34 (sodium phosphate),	347	Extracellular (Potential).				cellular phosphate ion homeostasis	apical plasma membrane|brush border membrane|integral to plasma membrane	phosphate binding|sodium ion binding|sodium-dependent phosphate transmembrane transporter activity|sodium:phosphate symporter activity			skin(3)|ovary(1)|kidney(1)	5		Breast(46;0.0503)				AGGAGAACATCGCCAAATGTG	0.507													61	99					0	0	0.000781405	0	0
TLR6	10333	broad.mit.edu	37	4	38830970	38830970	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr4:38830970C>T	uc003gtm.2	-	1	191	c.125G>A	c.(124-126)GGT>GAT	p.G42D	TLR6_uc010ifg.1_Missense_Mutation_p.G42D	NM_006068	NP_006059	Q9Y2C9	TLR6_HUMAN	toll-like receptor 6 precursor	42	Extracellular (Potential).				activation of NF-kappaB-inducing kinase activity|cellular response to diacyl bacterial lipopeptide|defense response to bacterium|detection of diacyl bacterial lipopeptide|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-6 biosynthetic process|positive regulation of JUN kinase activity|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	integral to plasma membrane|phagocytic vesicle membrane	lipopeptide binding|transmembrane receptor activity			ovary(2)	2						ATGAATAAGACCTCTTTTTGA	0.393													33	141					0	0	0.000339439	0	0
RFC1	5981	broad.mit.edu	37	4	39301645	39301645	+	Missense_Mutation	SNP	G	C	C			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr4:39301645G>C	uc003gty.1	-	21	2941	c.2807C>G	c.(2806-2808)GCG>GGG	p.A936G	RFC1_uc003gtx.1_Missense_Mutation_p.A935G	NM_002913	NP_002904	P35251	RFC1_HUMAN	replication factor C large subunit	936					DNA strand elongation involved in DNA replication|nucleotide-excision repair, DNA gap filling|regulation of transcription, DNA-dependent|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|telomere maintenance via telomerase|transcription, DNA-dependent|transcription-coupled nucleotide-excision repair	DNA replication factor C complex|nucleoplasm	ATP binding|DNA clamp loader activity|enzyme activator activity|protein binding	p.Q936*(1)		ovary(2)|pancreas(1)|skin(1)	4						GCTCACCTGCGCAGGCAGAAG	0.443													13	36					0	0	0.000219431	0	0
RBM47	54502	broad.mit.edu	37	4	40438601	40438601	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr4:40438601G>A	uc003gvc.2	-	5	1897	c.1187C>T	c.(1186-1188)TCC>TTC	p.S396F	RBM47_uc003gvd.2_Intron|RBM47_uc003gve.2_RNA|RBM47_uc011bys.1_Missense_Mutation_p.S358F	NM_001098634	NP_001092104	A0AV96	RBM47_HUMAN	RNA binding motif protein 47 isoform a	396						nucleus	nucleotide binding|RNA binding			breast(3)	3						CCCGAGGTAGGAACCCCTAGG	0.502													39	108					0	0	0.000781405	0	0
UBA6	55236	broad.mit.edu	37	4	68566789	68566789	+	Missense_Mutation	SNP	A	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr4:68566789A>T	uc003hdg.3	-	1	101	c.49T>A	c.(49-51)TGT>AGT	p.C17S	UBA6_uc003hdi.2_Missense_Mutation_p.C17S|UBA6_uc003hdj.2_Missense_Mutation_p.C17S|LOC550112_uc003hdl.3_5'Flank|LOC550112_uc003hdk.2_5'Flank	NM_018227	NP_060697	A0AVT1	UBA6_HUMAN	ubiquitin-activating enzyme E1-like 2	17					protein ubiquitination|ubiquitin-dependent protein catabolic process	cytoplasm	ATP binding|FAT10 activating enzyme activity|ligase activity|protein binding				0						CAGGAAGAACAGGACGCCTCT	0.662											OREG0016213	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	34					0	0	0.000157383	0	0
UGT2B10	7365	broad.mit.edu	37	4	69681842	69681842	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr4:69681842G>A	uc003hee.2	+	1	130	c.105G>A	c.(103-105)TGG>TGA	p.W35*	UGT2B10_uc011cam.1_Nonsense_Mutation_p.W35*	NM_001075	NP_001066	P36537	UDB10_HUMAN	UDP glucuronosyltransferase 2B10 isoform 1	35					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(3)|ovary(2)	5						ACAGCCTTTGGATGAATATGA	0.438													9	33					0	0	0.000274275	0	0
UGT2B7	7364	broad.mit.edu	37	4	69978270	69978270	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr4:69978270G>A	uc003heg.3	+	6	1452	c.1406G>A	c.(1405-1407)CGC>CAC	p.R469H	UGT2B7_uc010ihq.2_3'UTR	NM_001074	NP_001065	P16662	UD2B7_HUMAN	UDP glucuronosyltransferase 2B7 precursor	469					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			ovary(1)|skin(1)	2						TTTGTCATGCGCCACAAAGGA	0.463													19	63					0	0	0.000958276	0	0
GC	2638	broad.mit.edu	37	4	72618257	72618257	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr4:72618257G>A	uc003hge.2	-	11	1526	c.1373C>T	c.(1372-1374)CCT>CTT	p.P458L	GC_uc003hgd.2_Missense_Mutation_p.P336L|GC_uc010iie.2_Missense_Mutation_p.P458L|GC_uc010iif.2_Missense_Mutation_p.P477L	NM_000583	NP_000574	P02774	VTDB_HUMAN	vitamin D-binding protein precursor	458	Albumin 3.				hormone biosynthetic process|vitamin D metabolic process	cytosol|lysosomal lumen	actin binding|vitamin D binding|vitamin transporter activity			ovary(2)|upper_aerodigestive_tract(1)	3		all_hematologic(202;0.107)	Lung(101;0.148)		Cholecalciferol(DB00169)	GTAAAGAGGAGGTGAGTTTAT	0.438													4	27					0	0	0.00024832	0	0
NPFFR2	10886	broad.mit.edu	37	4	73013163	73013163	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr4:73013163C>T	uc003hgg.2	+	4	1301	c.1203C>T	c.(1201-1203)TAC>TAT	p.Y401Y	NPFFR2_uc010iig.1_Silent_p.Y183Y|NPFFR2_uc003hgi.2_Silent_p.Y302Y|NPFFR2_uc003hgh.2_Silent_p.Y299Y|NPFFR2_uc003hgj.2_RNA	NM_004885	NP_004876	Q9Y5X5	NPFF2_HUMAN	neuropeptide FF receptor 2 isoform 1	401	Extracellular (Potential).				detection of abiotic stimulus	actin cytoskeleton|integral to plasma membrane	neuropeptide receptor activity			ovary(2)|central_nervous_system(1)	3			Lung(101;0.0935)|LUSC - Lung squamous cell carcinoma(112;0.138)			TCTCAGACTACGCTGACCTTT	0.468													27	30					0	0	0.000720815	0	0
NPFFR2	10886	broad.mit.edu	37	4	73013193	73013193	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr4:73013193C>T	uc003hgg.2	+	4	1331	c.1233C>T	c.(1231-1233)ATC>ATT	p.I411I	NPFFR2_uc010iig.1_Silent_p.I193I|NPFFR2_uc003hgi.2_Silent_p.I312I|NPFFR2_uc003hgh.2_Silent_p.I309I|NPFFR2_uc003hgj.2_RNA	NM_004885	NP_004876	Q9Y5X5	NPFF2_HUMAN	neuropeptide FF receptor 2 isoform 1	411	Extracellular (Potential).				detection of abiotic stimulus	actin cytoskeleton|integral to plasma membrane	neuropeptide receptor activity			ovary(2)|central_nervous_system(1)	3			Lung(101;0.0935)|LUSC - Lung squamous cell carcinoma(112;0.138)			AACTGCAGATCATCAACATCT	0.473													24	52					0	0	0.00047179	0	0
ALB	213	broad.mit.edu	37	4	74277830	74277830	+	Missense_Mutation	SNP	T	G	G			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr4:74277830T>G	uc003hgs.3	+	7	904	c.831T>G	c.(829-831)TGT>TGG	p.C277W	ALB_uc003hgw.3_Missense_Mutation_p.C85W|ALB_uc011cbe.1_5'UTR|ALB_uc003hgt.3_Missense_Mutation_p.C277W|ALB_uc010iii.2_Missense_Mutation_p.C162W|ALB_uc003hgu.3_Missense_Mutation_p.C127W|ALB_uc003hgv.3_5'UTR|ALB_uc011cbf.1_Missense_Mutation_p.C167W|ALB_uc010iij.2_RNA|ALB_uc003hgx.3_5'UTR	NM_000477	NP_000468	P02768	ALBU_HUMAN	albumin preproprotein	277	Albumin 2.				bile acid and bile salt transport|bile acid metabolic process|cellular response to starvation|hemolysis by symbiont of host erythrocytes|lipoprotein metabolic process|maintenance of mitochondrion location|negative regulation of apoptosis|platelet activation|platelet degranulation|sodium-independent organic anion transport|transmembrane transport	extracellular space|platelet alpha granule lumen|protein complex	antioxidant activity|chaperone binding|copper ion binding|DNA binding|drug binding|fatty acid binding|pyridoxal phosphate binding|toxin binding			ovary(3)|skin(3)	6	Breast(15;0.00102)		Epithelial(6;4.8e-05)|OV - Ovarian serous cystadenocarcinoma(6;0.000263)|all cancers(17;0.000472)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)		Acenocoumarol(DB01418)|Acitretin(DB00459)|Alfentanil(DB00802)|Aluminium(DB01370)|Auranofin(DB00995)|Bismuth(DB01402)|Captopril(DB01197)|Carboplatin(DB00958)|Cefalotin(DB00456)|Cefazolin(DB01327)|Cefonicid(DB01328)|Cefoperazone(DB01329)|Chlorpheniramine(DB01114)|Chlorpromazine(DB00477)|Ciprofloxacin(DB00537)|Clonazepam(DB01068)|Cloxacillin(DB01147)|Cytarabine(DB00987)|Dantrolene(DB01219)|Diclofenac(DB00586)|Diflunisal(DB00861)|Digitoxin(DB01396)|Estrone(DB00655)|Ethacrynic acid(DB00903)|Etodolac(DB00749)|Flurbiprofen(DB00712)|Gadobenate Dimeglumine(DB00743)|Gatifloxacin(DB01044)|Gliclazide(DB01120)|Halothane(DB01159)|Human Serum Albumin(DB00062)|Hyaluronidase(DB00070)|Ibuprofen(DB01050)|Insulin-detemir(DB01307)|Insulin-glargine(DB01308)|Iodipamide(DB04711)|Ketoprofen(DB01009)|Levamisole(DB00848)|Levothyroxine(DB00451)|Liothyronine(DB00279)|Mefenamic acid(DB00784)|Mephenytoin(DB00532)|Methotrexate(DB00563)|Nortriptyline(DB00540)|Oxazepam(DB00842)|Paclitaxel(DB01229)|Phenprocoumon(DB00946)|Probenecid(DB01032)|Propofol(DB00818)|Pyridoxine(DB00165)|Salicyclic acid(DB00936)|Saquinavir(DB01232)|Serum albumin(DB00096)|Serum albumin iodonated(DB00064)|Sodium lauryl sulfate(DB00815)|Sucralfate(DB00364)|Sulfamethizole(DB00576)|Sulindac(DB00605)|Suprofen(DB00870)|Testosterone(DB00624)|Xanthophyll(DB00137)	TGCTTGAATGTGCTGATGACA	0.453													16	85					0	0	0.000566183	0	0
BTC	685	broad.mit.edu	37	4	75673320	75673320	+	Missense_Mutation	SNP	T	G	G			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr4:75673320T>G	uc003hig.2	-	5	815	c.468A>C	c.(466-468)GAA>GAC	p.E156D		NM_001729	NP_001720	P35070	BTC_HUMAN	betacellulin precursor	156	Cytoplasmic (Potential).				positive regulation of cell division|positive regulation of cell proliferation	extracellular space|integral to membrane|plasma membrane|soluble fraction	epidermal growth factor receptor binding|growth factor activity			central_nervous_system(1)|skin(1)	2			Lung(101;0.219)			TTTCCATTTCTTCTTCTTTCT	0.343													7	74					0	0	0.000274275	0	0
CCDC158	339965	broad.mit.edu	37	4	77253640	77253640	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr4:77253640C>T	uc003hkb.3	-	19	2968	c.2815G>A	c.(2815-2817)GAT>AAT	p.D939N		NM_001042784	NP_001036249	Q5M9N0	CD158_HUMAN	coiled-coil domain containing 158	939										skin(3)|ovary(2)|pancreas(1)	6						CTTACCCTATCCTCTCTGTAT	0.308													27	38					0	0	0.000409698	0	0
FRAS1	80144	broad.mit.edu	37	4	79385217	79385217	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr4:79385217G>A	uc003hlb.2	+	48	7246	c.6806G>A	c.(6805-6807)CGA>CAA	p.R2269Q		NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	2268	CSPG 10.|Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						CTGACTTCACGAAATGTTCAG	0.413													12	42					0	0	0.000308642	0	0
WDFY3	23001	broad.mit.edu	37	4	85729523	85729523	+	Missense_Mutation	SNP	G	C	C			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr4:85729523G>C	uc003hpd.2	-	15	2801	c.2393C>G	c.(2392-2394)CCC>CGC	p.P798R		NM_014991	NP_055806	Q8IZQ1	WDFY3_HUMAN	WD repeat and FYVE domain containing 3 isoform	798						cytoplasmic part|extrinsic to membrane|nuclear envelope	1-phosphatidylinositol binding|metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000808)		CCAAGGAGAGGGGAGAGAAGA	0.448													3	85					0	0	3.59834e-05	0	0
MAPK10	5602	broad.mit.edu	37	4	87115540	87115540	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr4:87115540G>A	uc003hpq.2	-	2	82	c.15C>T	c.(13-15)TTC>TTT	p.F5F	MAPK10_uc010ikg.2_5'UTR|MAPK10_uc003hpr.2_5'UTR|MAPK10_uc003hps.2_Silent_p.F5F|MAPK10_uc003hpt.2_Silent_p.F5F|MAPK10_uc003hpu.2_Silent_p.F5F|MAPK10_uc003hpv.2_5'UTR|MAPK10_uc010ikh.1_RNA|uc003hpw.2_Intron	NM_138982	NP_620448	P53779	MK10_HUMAN	mitogen-activated protein kinase 10 isoform 2	5					innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|regulation of sequence-specific DNA binding transcription factor activity|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|JUN kinase activity|MAP kinase kinase activity|protein binding			stomach(1)|breast(1)|central_nervous_system(1)	3		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.243)		OV - Ovarian serous cystadenocarcinoma(123;0.002)		AGTAGTATAAGAAATGGAGGC	0.318													48	154					0	0	0.000781405	0	0
HPGDS	27306	broad.mit.edu	37	4	95255745	95255745	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr4:95255745C>T	uc003hte.1	-	2	127	c.36G>A	c.(34-36)AGG>AGA	p.R12R		NM_014485	NP_055300	O60760	HPGDS_HUMAN	prostaglandin D2 synthase, hematopoietic	12	GST N-terminal.				locomotory behavior|prostaglandin biosynthetic process|signal transduction	cytoplasm|nucleus	calcium ion binding|glutathione transferase activity|magnesium ion binding|prostaglandin-D synthase activity|protein homodimerization activity			ovary(1)	1					Glutathione(DB00143)	CTGCTCTCCCCCTCATATTAA	0.368													11	67					0	0	0.00010058	0	0
NFKB1	4790	broad.mit.edu	37	4	103459077	103459077	+	Silent	SNP	T	G	G			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr4:103459077T>G	uc011ceq.1	+	5	686	c.219T>G	c.(217-219)TCT>TCG	p.S73S	NFKB1_uc011cep.1_Silent_p.S74S	NM_003998	NP_003989	P19838	NFKB1_HUMAN	nuclear factor kappa-B, subunit 1 isoform 1	73	RHD.				anti-apoptosis|apoptosis|cellular response to mechanical stimulus|inflammatory response|innate immune response|membrane protein intracellular domain proteolysis|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of calcidiol 1-monooxygenase activity|nerve growth factor receptor signaling pathway|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of NF-kappaB transcription factor activity|positive regulation of transcription, DNA-dependent|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|transcription from RNA polymerase II promoter	cytosol|I-kappaB/NF-kappaB complex|mitochondrion|nucleoplasm	protein binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			ovary(2)|breast(2)|skin(1)	5		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;6.59e-08)	Dexamethasone(DB01234)|Pranlukast(DB01411)|Thalidomide(DB01041)	CTGGTGCCTCTAGTGAAAAGA	0.408													11	17					0	0	6.40141e-05	0	0
TBCK	93627	broad.mit.edu	37	4	107154798	107154798	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr4:107154798G>A	uc010ilv.2	-	16	1824	c.1459C>T	c.(1459-1461)CAT>TAT	p.H487Y	TBCK_uc003hyb.2_Missense_Mutation_p.H230Y|TBCK_uc003hye.2_Missense_Mutation_p.H448Y|TBCK_uc003hyc.2_Missense_Mutation_p.H424Y|TBCK_uc003hyd.2_Missense_Mutation_p.H315Y|TBCK_uc003hyf.2_Missense_Mutation_p.H487Y	NM_001163435	NP_001156907	Q8TEA7	TBCK_HUMAN	TBC domain-containing protein kinase-like	487	Rab-GAP TBC.					intracellular	Rab GTPase activator activity			large_intestine(2)|upper_aerodigestive_tract(1)|stomach(1)|ovary(1)	5						TACTTGGCATGAATAGCTCCC	0.274													4	13					0	0	0.000602214	0	0
LRIT3	345193	broad.mit.edu	37	4	110791224	110791224	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr4:110791224G>A	uc003hzx.3	+	3	1377	c.1184G>A	c.(1183-1185)CGA>CAA	p.R395Q	LRIT3_uc003hzw.3_Missense_Mutation_p.R257Q	NM_198506	NP_940908	Q3SXY7	LRIT3_HUMAN	leucine-rich repeat, immunoglobulin-like and	395						integral to membrane					0				OV - Ovarian serous cystadenocarcinoma(123;0.0011)		GCCAACAAGCGATCATTCCAG	0.363													13	61					0	0	0.00010058	0	0
EGF	1950	broad.mit.edu	37	4	110865147	110865147	+	Missense_Mutation	SNP	A	G	G			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr4:110865147A>G	uc003hzy.3	+	4	1111	c.659A>G	c.(658-660)AAC>AGC	p.N220S	EGF_uc011cfu.1_Missense_Mutation_p.N220S|EGF_uc011cfv.1_Missense_Mutation_p.N220S	NM_001963	NP_001954	P01133	EGF_HUMAN	epidermal growth factor precursor	220	LDL-receptor class B 4.|Extracellular (Potential).				angiogenesis|DNA replication|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of secretion|platelet activation|platelet degranulation|positive regulation of catenin import into nucleus|positive regulation of epidermal growth factor receptor activity|positive regulation of MAP kinase activity|positive regulation of mitosis|regulation of calcium ion import|regulation of protein localization at cell surface	integral to membrane|plasma membrane|platelet alpha granule lumen	calcium ion binding|epidermal growth factor receptor binding|growth factor activity|transmembrane receptor protein tyrosine kinase activator activity			ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	4		Hepatocellular(203;0.0893)		OV - Ovarian serous cystadenocarcinoma(123;9.87e-06)	Sulindac(DB00605)	ATTCAGTACAACAGAGAAGGA	0.413													29	38					0	0	0.000147802	0	0
ALPK1	80216	broad.mit.edu	37	4	113353542	113353543	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr4:113353542_113353543CC>TT	uc003iap.3	+	11	3118_3119	c.2839_2840CC>TT	c.(2839-2841)CCT>TTT	p.P947F	ALPK1_uc003ian.3_Missense_Mutation_p.P947F|ALPK1_uc011cfx.1_Missense_Mutation_p.P869F|ALPK1_uc003iao.3_Intron|ALPK1_uc010imo.2_Missense_Mutation_p.P775F	NM_025144	NP_079420	Q96QP1	ALPK1_HUMAN	alpha-kinase 1	947	Ser-rich.						ATP binding|protein serine/threonine kinase activity			ovary(5)	5		Ovarian(17;0.0446)|Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.00325)		GGGGGACAGCCCTTGGTCCTAT	0.51													11	33					0	0	6.4e-05	0	0
ANK2	287	broad.mit.edu	37	4	114279405	114279405	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr4:114279405G>A	uc003ibe.3	+	38	9731	c.9631G>A	c.(9631-9633)GAA>AAA	p.E3211K	ANK2_uc003ibd.3_Intron|ANK2_uc003ibf.3_Intron|ANK2_uc011cgc.1_Intron|ANK2_uc003ibg.3_Intron|ANK2_uc003ibh.3_Intron|ANK2_uc011cgd.1_Missense_Mutation_p.E513K|ANK2_uc011cgb.1_Missense_Mutation_p.E3226K	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	3178					axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		AGCCTCCACTGAAACACCTAC	0.488													6	18					0	0	8.12818e-05	0	0
ANK2	287	broad.mit.edu	37	4	114288909	114288909	+	Silent	SNP	C	G	G			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr4:114288909C>G	uc003ibe.3	+	42	11320	c.11220C>G	c.(11218-11220)CTC>CTG	p.L3740L	ANK2_uc003ibd.3_Silent_p.L1646L|ANK2_uc003ibf.3_Silent_p.L1655L|ANK2_uc011cgc.1_Silent_p.L831L|ANK2_uc003ibg.3_Silent_p.L639L|ANK2_uc003ibh.3_Silent_p.L329L|ANK2_uc011cgd.1_Silent_p.L1042L	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	3707			L -> I (in LQT4; loss of function).		axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		CAACAGCACTCTTTCCCCAAA	0.468													20	33					0	0	0.000229342	0	0
ARSJ	79642	broad.mit.edu	37	4	114823585	114823585	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr4:114823585C>T	uc003ibq.1	-	2	2533	c.1645G>A	c.(1645-1647)GGG>AGG	p.G549R	ARSJ_uc010imu.1_Missense_Mutation_p.G549R|ARSJ_uc010imv.1_Missense_Mutation_p.G377R	NM_024590	NP_078866	Q5FYB0	ARSJ_HUMAN	arylsulfatase J precursor	549						extracellular region	arylsulfatase activity|metal ion binding			ovary(1)	1		Ovarian(17;0.0035)|Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.00194)		CCCCAGACCCCTCCATTGAGC	0.333													5	22					0	0	3.59834e-05	0	0
MYOZ2	51778	broad.mit.edu	37	4	120107233	120107233	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr4:120107233C>T	uc003icp.3	+	6	886	c.673C>T	c.(673-675)CCC>TCC	p.P225S		NM_016599	NP_057683	Q9NPC6	MYOZ2_HUMAN	myozenin 2	225							protein phosphatase 2B binding				0						CTTTGTCAATCCCCTTTCTGG	0.383													18	58					0	0	0.000958276	0	0
FAT4	79633	broad.mit.edu	37	4	126336764	126336764	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr4:126336764C>T	uc003ifj.3	+	5	6646	c.6646C>T	c.(6646-6648)CCT>TCT	p.P2216S	FAT4_uc011cgp.1_Missense_Mutation_p.P514S	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	2216	Cadherin 21.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						TGTCGCTAAACCTTTGGATAG	0.463													6	35					0	0	8.12818e-05	0	0
FAT4	79633	broad.mit.edu	37	4	126402830	126402830	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr4:126402830G>A	uc003ifj.3	+	15	12753	c.12753G>A	c.(12751-12753)AGG>AGA	p.R4251R	FAT4_uc011cgp.1_Silent_p.R2492R|FAT4_uc003ifi.1_Silent_p.R1729R	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	4251	Laminin G-like 2.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						TAAAATTTAGGACCAGAAGCG	0.403													13	40					0	0	0.000151284	0	0
CLGN	1047	broad.mit.edu	37	4	141334224	141334224	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr4:141334224G>A	uc011chi.1	-	3	227	c.9C>T	c.(7-9)TTC>TTT	p.F3F	CLGN_uc003iii.2_Silent_p.F3F	NM_001130675	NP_001124147	O14967	CLGN_HUMAN	calmegin precursor	3					protein folding	endoplasmic reticulum membrane|integral to membrane	calcium ion binding|unfolded protein binding			ovary(2)|skin(1)	3	all_hematologic(180;0.162)					AAAAGGCTTGGAAATGCATAT	0.284													15	95					0	0	0.000958276	0	0
MMAA	166785	broad.mit.edu	37	4	146560327	146560327	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr4:146560327C>T	uc003ikh.3	+	2	121	c.36C>T	c.(34-36)TTC>TTT	p.F12F	MMAA_uc003ikg.2_Silent_p.F12F|MMAA_uc003iki.1_RNA|MMAA_uc010iow.2_RNA	NM_172250	NP_758454	Q8IVH4	MMAA_HUMAN	methylmalonic aciduria type A precursor	12						mitochondrion	GTP binding|nucleoside-triphosphatase activity			ovary(1)	1	all_hematologic(180;0.151)				Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	ACCAGCATTTCCTAAAAGGCC	0.438													14	130					0	0	0.000566183	0	0
FGA	2243	broad.mit.edu	37	4	155507765	155507765	+	Silent	SNP	T	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr4:155507765T>A	uc003iod.1	-	5	874	c.816A>T	c.(814-816)GGA>GGT	p.G272G	FGA_uc003ioe.1_Silent_p.G272G|FGA_uc003iof.1_Intron	NM_000508	NP_000499	P02671	FIBA_HUMAN	fibrinogen, alpha polypeptide isoform alpha-E	272	By similarity.				platelet activation|platelet degranulation|protein polymerization|response to calcium ion|signal transduction	external side of plasma membrane|fibrinogen complex|platelet alpha granule lumen	eukaryotic cell surface binding|protein binding, bridging|receptor binding			ovary(2)|breast(1)	3	all_hematologic(180;0.215)	Renal(120;0.0458)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Sucralfate(DB00364)|Tenecteplase(DB00031)	AGGTGGAGCCTCCTCGAGTAA	0.542													7	41					0	0	0.000157383	0	0
NPY2R	4887	broad.mit.edu	37	4	156135711	156135711	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr4:156135711G>A	uc003ioq.2	+	2	1115	c.620G>A	c.(619-621)TGG>TAG	p.W207*	NPY2R_uc003ior.2_Nonsense_Mutation_p.W207*	NM_000910	NP_000901	P49146	NPY2R_HUMAN	neuropeptide Y receptor Y2	207	Extracellular (Potential).				cardiac left ventricle morphogenesis|inhibition of adenylate cyclase activity by G-protein signaling pathway|locomotory behavior|outflow tract morphogenesis	integral to plasma membrane	calcium channel regulator activity			lung(2)|skin(1)	3	all_hematologic(180;0.24)	Renal(120;0.0854)				ACTGAAAAGTGGCCTGGCGAG	0.488													34	65					0	0	0.000680045	0	0
GUCY1A3	2982	broad.mit.edu	37	4	156629388	156629388	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr4:156629388G>A	uc003iov.2	+	6	854	c.318G>A	c.(316-318)AGG>AGA	p.R106R	GUCY1A3_uc003iou.2_Silent_p.R106R|GUCY1A3_uc010iqc.2_Silent_p.R106R|GUCY1A3_uc003iow.2_Silent_p.R106R|GUCY1A3_uc010iqd.2_Silent_p.R106R|GUCY1A3_uc003iox.2_Silent_p.R106R|GUCY1A3_uc003ioz.2_5'UTR|GUCY1A3_uc003ioy.2_Silent_p.R106R|GUCY1A3_uc010iqe.2_5'UTR|GUCY1A3_uc003ipa.2_RNA|GUCY1A3_uc003ipb.2_Silent_p.R106R	NM_000856	NP_000847	Q02108	GCYA3_HUMAN	guanylate cyclase 1, soluble, alpha 3 isoform A	106					blood circulation|intracellular signal transduction|nitric oxide mediated signal transduction|platelet activation	guanylate cyclase complex, soluble	GTP binding|guanylate cyclase activity|heme binding|receptor activity			central_nervous_system(2)|ovary(1)|skin(1)	4	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.17)		ATATTTCCAGGAAATCTTTGG	0.259													8	58					0	0	0.000673444	0	0
DDX60L	91351	broad.mit.edu	37	4	169327209	169327209	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr4:169327209G>A	uc003irq.3	-	24	3326	c.3105C>T	c.(3103-3105)TTC>TTT	p.F1035F	DDX60L_uc003irr.1_Silent_p.F1035F|DDX60L_uc003irs.1_Silent_p.F730F	NM_001012967	NP_001012985	Q5H9U9	DDX6L_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like	1035							ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)	1		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.175)		TAAAAAGAATGAATTCCTCTG	0.284													6	27					0	0	0.000157383	0	0
GALNTL6	442117	broad.mit.edu	37	4	173873285	173873285	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr4:173873285C>T	uc003isv.2	+	10	1983	c.1247C>T	c.(1246-1248)TCT>TTT	p.S416F		NM_001034845	NP_001030017	Q49A17	GLTL6_HUMAN	N-acetylgalactosaminyltransferase-like 6	416	Lumenal (Potential).					Golgi membrane|integral to membrane	metal ion binding|polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			breast(2)|ovary(1)|skin(1)	4						GGGGACATCTCTGCCCAGAAG	0.567													5	31					0	0	3.59834e-05	0	0
ADAM29	11086	broad.mit.edu	37	4	175897101	175897101	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr4:175897101C>T	uc003iuc.2	+	5	1095	c.425C>T	c.(424-426)TCT>TTT	p.S142F	ADAM29_uc003iud.2_Missense_Mutation_p.S142F|ADAM29_uc010irr.2_Missense_Mutation_p.S142F|ADAM29_uc011cki.1_Missense_Mutation_p.S142F	NM_014269	NP_055084	Q9UKF5	ADA29_HUMAN	ADAM metallopeptidase domain 29 preproprotein	142					proteolysis|spermatogenesis	integral to plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(5)|central_nervous_system(3)|ovary(3)|large_intestine(2)|lung(2)|pancreas(1)	16		Breast(14;0.00908)|Melanoma(52;0.00951)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;3.08e-19)|Epithelial(43;6.24e-18)|OV - Ovarian serous cystadenocarcinoma(60;1.78e-09)|STAD - Stomach adenocarcinoma(60;0.00303)|GBM - Glioblastoma multiforme(59;0.0106)|LUSC - Lung squamous cell carcinoma(193;0.0286)		CTAGCATTTTCTACCACGTTT	0.398													10	21					0	0	0.000673444	0	0
ADAM29	11086	broad.mit.edu	37	4	175898916	175898916	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr4:175898916C>T	uc003iuc.2	+	5	2910	c.2240C>T	c.(2239-2241)CCT>CTT	p.P747L	ADAM29_uc003iud.2_Missense_Mutation_p.P747L|ADAM29_uc010irr.2_Missense_Mutation_p.P747L|ADAM29_uc011cki.1_Missense_Mutation_p.P747L	NM_014269	NP_055084	Q9UKF5	ADA29_HUMAN	ADAM metallopeptidase domain 29 preproprotein	747	Cytoplasmic (Potential).|9 X 9 AA approximate repeats.|1.				proteolysis|spermatogenesis	integral to plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(5)|central_nervous_system(3)|ovary(3)|large_intestine(2)|lung(2)|pancreas(1)	16		Breast(14;0.00908)|Melanoma(52;0.00951)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;3.08e-19)|Epithelial(43;6.24e-18)|OV - Ovarian serous cystadenocarcinoma(60;1.78e-09)|STAD - Stomach adenocarcinoma(60;0.00303)|GBM - Glioblastoma multiforme(59;0.0106)|LUSC - Lung squamous cell carcinoma(193;0.0286)		CCTGTGACGCCTTCCCAGAGT	0.537													9	34					0	0	0.000442599	0	0
FAT1	2195	broad.mit.edu	37	4	187549677	187549677	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr4:187549677G>A	uc003izf.2	-	8	4752	c.4564C>T	c.(4564-4566)CAT>TAT	p.H1522Y		NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	1522	Extracellular (Potential).|Cadherin 13.				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						ACAGCTTCATGATCCAGTTTC	0.507										HNSCC(5;0.00058)			12	41					0	0	0.000151284	0	0
SLC6A19	340024	broad.mit.edu	37	5	1213673	1213673	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr5:1213673C>T	uc003jbw.3	+	5	815	c.759C>T	c.(757-759)TTC>TTT	p.F253F		NM_001003841	NP_001003841	Q695T7	S6A19_HUMAN	solute carrier family 6, member 19	253	Extracellular (Potential).				cellular nitrogen compound metabolic process	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity				0	all_cancers(3;3.55e-15)|Lung NSC(6;2.89e-14)|all_lung(6;2.2e-13)|all_epithelial(6;3.75e-10)		Epithelial(17;0.000356)|all cancers(22;0.00137)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			GCATCGTCTTCCTCTTCACGC	0.652													7	24					0	0	0.000442599	0	0
CLPTM1L	81037	broad.mit.edu	37	5	1344506	1344506	+	Missense_Mutation	SNP	A	C	C			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr5:1344506A>C	uc003jch.2	-	2	269	c.223T>G	c.(223-225)TTG>GTG	p.L75V	CLPTM1L_uc003jcg.2_5'Flank	NM_030782	NP_110409	Q96KA5	CLP1L_HUMAN	CLPTM1-like	75	Extracellular (Potential).				apoptosis	integral to membrane				breast(1)|central_nervous_system(1)	2	Lung NSC(6;5.78e-14)|all_lung(6;4.47e-13)|all_epithelial(6;4.47e-09)		Epithelial(17;0.00931)|OV - Ovarian serous cystadenocarcinoma(19;0.0116)|all cancers(22;0.0181)	KIRC - Kidney renal clear cell carcinoma(5;0.177)|Kidney(13;0.208)		TCCACATTCAAGACCAGGTCG	0.512													17	30					0	0	0.000175454	0	0
SLC6A3	6531	broad.mit.edu	37	5	1441591	1441591	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr5:1441591G>A	uc003jck.2	-	3	422	c.301C>T	c.(301-303)CCC>TCC	p.P101S		NM_001044	NP_001035	Q01959	SC6A3_HUMAN	solute carrier family 6 (neurotransmitter	101	Helical; Name=2; (Potential).				cell death|neurotransmitter biosynthetic process	axon|cytoplasm|integral to plasma membrane|neuronal cell body				ovary(3)|breast(2)|pancreas(1)	6			OV - Ovarian serous cystadenocarcinoma(19;0.00928)|all cancers(22;0.0262)		Amphetamine(DB00182)|Benztropine(DB00245)|Bupropion(DB01156)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dextroamphetamine(DB01576)|Diethylpropion(DB00937)|Duloxetine(DB00476)|Fencamfamine(DB01463)|Mazindol(DB00579)|Methylphenidate(DB00422)|Modafinil(DB00745)|Phenmetrazine(DB00830)|Phentermine(DB00191)|Procaine(DB00721)	AGCAGGTAGGGGACCAGGAAG	0.597													6	37					0	0	0.000274275	0	0
NSUN2	54888	broad.mit.edu	37	5	6600246	6600246	+	Silent	SNP	G	A	A	rs1057838		TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr5:6600246G>A	uc003jdu.2	-	19	2162	c.2097C>T	c.(2095-2097)CTC>CTT	p.L699L	NSUN2_uc003jds.2_Silent_p.L145L|NSUN2_uc003jdt.2_Silent_p.L463L|NSUN2_uc011cmk.1_Silent_p.L664L|NSUN2_uc003jdv.2_Silent_p.L463L	NM_017755	NP_060225	Q08J23	NSUN2_HUMAN	NOL1/NOP2/Sun domain family, member 2	699						cytoplasm|nucleolus	tRNA (cytosine-5-)-methyltransferase activity|tRNA binding	p.L699F(1)		ovary(1)	1						CCATCATCCTGAGATAATGAA	0.522													25	29					0	0	0.00047179	0	0
CTNND2	1501	broad.mit.edu	37	5	11364983	11364983	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr5:11364983G>T	uc003jfa.1	-	8	1342	c.1197C>A	c.(1195-1197)TAC>TAA	p.Y399*	CTNND2_uc010itt.2_Nonsense_Mutation_p.Y308*|CTNND2_uc011cmy.1_Nonsense_Mutation_p.Y62*|CTNND2_uc011cmz.1_5'UTR|CTNND2_uc010itu.1_RNA|CTNND2_uc011cmx.1_5'UTR	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	399	ARM 1.				multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						GCTGGCTGCTGTATGAGGCTC	0.507													12	63					3.27435e-08	4.09456e-07	0.000219431	1	0
DNAH5	1767	broad.mit.edu	37	5	13864563	13864563	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr5:13864563G>A	uc003jfd.2	-	28	4581	c.4539C>T	c.(4537-4539)AGC>AGT	p.S1513S		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1513	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TTAACTTAAAGCTTTCATTCC	0.468									Kartagener_syndrome				23	29					0	0	0.000295444	0	0
DNAH5	1767	broad.mit.edu	37	5	13901548	13901548	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr5:13901548G>A	uc003jfd.2	-	14	1907	c.1865C>T	c.(1864-1866)CCC>CTC	p.P622L		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	622	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TCCAGCGATGGGAGGCTGGTT	0.493									Kartagener_syndrome				9	29					0	0	0.000673444	0	0
PRDM9	56979	broad.mit.edu	37	5	23522412	23522412	+	Splice_Site	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr5:23522412G>A	uc003jgo.2	+	7	691	c.509_splice	c.e7-1	p.E170_splice		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9						meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						CTCCAACCTAGAACTCAGGAA	0.428										HNSCC(3;0.000094)			25	118					0	0	0.000878237	0	0
CDH9	1007	broad.mit.edu	37	5	26916004	26916004	+	Missense_Mutation	SNP	C	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr5:26916004C>A	uc003jgs.1	-	3	426	c.257G>T	c.(256-258)GGA>GTA	p.G86V	CDH9_uc010iug.2_Missense_Mutation_p.G86V	NM_016279	NP_057363	Q9ULB4	CADH9_HUMAN	cadherin 9, type 2 preproprotein	86	Extracellular (Potential).|Cadherin 1.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)	9						TTTTAAATTTCCATCTCCTTT	0.338													12	65					1.52009e-12	1.91294e-11	0.000308642	1	0
Unknown	0	broad.mit.edu	37	5	28927046	28927046	+	RNA	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr5:28927046C>T	uc003jgz.1	+	1		c.70C>T								Homo sapiens similar to Striatin, mRNA (cDNA clone MGC:150339 IMAGE:40119616), complete cds.																		AGCCAAGACTCTGTCCTGCAA	0.577													4	14					0	0	0.00024832	0	0
CDH6	1004	broad.mit.edu	37	5	31267592	31267592	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr5:31267592C>T	uc003jhe.1	+	2	338	c.12C>T	c.(10-12)TAC>TAT	p.Y4Y	CDH6_uc003jhd.1_Silent_p.Y4Y	NM_004932	NP_004923	P55285	CADH6_HUMAN	cadherin 6, type 2 preproprotein	4					adherens junction organization|cell junction assembly|homophilic cell adhesion	cytoplasm|integral to membrane|nucleus|plasma membrane	calcium ion binding			ovary(4)|skin(2)|large_intestine(1)	7						TGAGAACTTACCGCTACTTCT	0.532													13	41					0	0	0.000308642	0	0
SPEF2	79925	broad.mit.edu	37	5	35763799	35763799	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr5:35763799C>T	uc003jjo.2	+	26	3907	c.3796C>T	c.(3796-3798)CAC>TAC	p.H1266Y	SPEF2_uc003jjp.1_Missense_Mutation_p.H752Y	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	1266					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			AGCAGTATCTCACATGGTAAG	0.413													18	74					0	0	0.000229342	0	0
IL7R	3575	broad.mit.edu	37	5	35873713	35873713	+	Missense_Mutation	SNP	T	G	G			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr5:35873713T>G	uc003jjs.2	+	5	758	c.669T>G	c.(667-669)AGT>AGG	p.S223R	IL7R_uc011coo.1_Missense_Mutation_p.S223R|IL7R_uc011cop.1_Intron	NM_002185	NP_002176	P16871	IL7RA_HUMAN	interleukin 7 receptor precursor	223	Extracellular (Potential).|Fibronectin type-III.				immune response|regulation of DNA recombination	extracellular region|integral to membrane	antigen binding|interleukin-7 receptor activity			ovary(3)|breast(1)|skin(1)	5	all_lung(31;0.00015)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.187)|Colorectal(62;0.202)			GGAGTCCAAGTTATTACTTCA	0.433													10	58					0	0	0.00010058	0	0
IL7R	3575	broad.mit.edu	37	5	35875642	35875642	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr5:35875642C>T	uc003jjs.2	+	7	918	c.829C>T	c.(829-831)CCC>TCC	p.P277S	IL7R_uc011coo.1_Silent_p.S245S|IL7R_uc011cop.1_RNA	NM_002185	NP_002176	P16871	IL7RA_HUMAN	interleukin 7 receptor precursor	277	Box 1 motif.|Cytoplasmic (Potential).				immune response|regulation of DNA recombination	extracellular region|integral to membrane	antigen binding|interleukin-7 receptor activity			ovary(3)|breast(1)|skin(1)	5	all_lung(31;0.00015)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.187)|Colorectal(62;0.202)			GCCCAGTCTCCCCGATCATAA	0.438													25	22					0	0	0.000227799	0	0
DAB2	1601	broad.mit.edu	37	5	39381706	39381706	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr5:39381706C>T	uc003jlx.2	-	11	1885	c.1354G>A	c.(1354-1356)GAC>AAC	p.D452N	DAB2_uc003jlw.2_Missense_Mutation_p.D431N	NM_001343	NP_001334	P98082	DAB2_HUMAN	disabled homolog 2	452					cell proliferation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of protein binding|negative regulation of transcription, DNA-dependent|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein phosphorylation|positive regulation of transcription, DNA-dependent|positive regulation of Wnt receptor signaling pathway, planar cell polarity pathway	clathrin coated vesicle membrane|coated pit	protein C-terminus binding			kidney(2)|skin(1)	3	all_lung(31;0.000197)		Epithelial(62;0.137)			GCAAGCAAGTCATTGGCTGAA	0.527													11	40					0	0	0.00010058	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41039586	41039586	+	Missense_Mutation	SNP	G	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr5:41039586G>T	uc003jmj.3	-	20	2515	c.2025C>A	c.(2023-2025)TTC>TTA	p.F675L	HEATR7B2_uc003jmi.3_Missense_Mutation_p.F230L	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	675	HEAT 8.						binding			ovary(6)|central_nervous_system(2)	8						CCTGATTTTGGAATGTTTTAA	0.333													9	25					1.12685e-05	0.00014028	0.000274275	1	0
C6	729	broad.mit.edu	37	5	41149408	41149408	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr5:41149408G>A	uc003jmk.2	-	17	2768	c.2558C>T	c.(2557-2559)TCA>TTA	p.S853L	C6_uc003jml.1_Missense_Mutation_p.S853L	NM_000065	NP_000056	P13671	CO6_HUMAN	complement component 6 precursor	853	C5b-binding domain.				complement activation, classical pathway|cytolysis|innate immune response	membrane attack complex	protein binding			ovary(3)|central_nervous_system(2)|skin(2)	7		Breast(839;1.07e-05)|Ovarian(839;0.0228)|Lung SC(612;0.0548)|Lung NSC(810;0.128)|all_neural(839;0.157)				GCTGTTGGATGAAAGTCTTGT	0.423													38	47					0	0	0.000953801	0	0
HCN1	348980	broad.mit.edu	37	5	45267329	45267329	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr5:45267329G>A	uc003jok.2	-	7	1670	c.1645C>T	c.(1645-1647)CGT>TGT	p.R549C		NM_021072	NP_066550	O60741	HCN1_HUMAN	hyperpolarization activated cyclic	549	cAMP.|Cytoplasmic (Potential).					integral to membrane	cAMP binding|sodium channel activity|voltage-gated potassium channel activity			ovary(1)	1						CTGGCAGTACGACGTCCTTTG	0.408													18	86					0	0	0.000132079	0	0
IPO11	51194	broad.mit.edu	37	5	61770264	61770264	+	Missense_Mutation	SNP	G	C	C			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr5:61770264G>C	uc003jtc.2	+	8	920	c.730G>C	c.(730-732)GAA>CAA	p.E244Q	IPO11_uc011cqr.1_Missense_Mutation_p.E284Q|IPO11_uc003jtb.1_Missense_Mutation_p.E244Q	NM_016338	NP_057422	Q9UI26	IPO11_HUMAN	Ran binding protein 11 isoform 2	244	HEAT 2.					cytoplasm|nucleus	protein binding			lung(2)|skin(2)	4		Lung NSC(810;8.99e-06)|Prostate(74;0.0235)|Ovarian(174;0.0511)|Breast(144;0.077)		Lung(70;0.0613)		TGGAATATTTGAACGTCTAAA	0.269													4	240					0	0	0.000602214	0	0
RGS7BP	401190	broad.mit.edu	37	5	63871668	63871668	+	Missense_Mutation	SNP	A	C	C			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr5:63871668A>C	uc003jtj.2	+	3	400	c.400A>C	c.(400-402)ATG>CTG	p.M134L	RGS7BP_uc011cqu.1_Missense_Mutation_p.M1L	NM_001029875	NP_001025046	Q6MZT1	R7BP_HUMAN	regulator of G-protein signaling 7 binding	134					negative regulation of signal transduction	cytoplasm|nucleus|plasma membrane					0		Lung NSC(810;0.000518)|Prostate(74;0.0435)|Ovarian(174;0.186)		Lung(70;0.147)		CTGCTTAGAAATGTATACCAC	0.428													15	45					0	0	0.000422831	0	0
PPWD1	23398	broad.mit.edu	37	5	64868010	64868010	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr5:64868010C>T	uc003jtv.3	+	5	873	c.866C>T	c.(865-867)TCA>TTA	p.S289L	PPWD1_uc011cqv.1_Missense_Mutation_p.S259L|PPWD1_uc011cqw.1_Missense_Mutation_p.S133L	NM_015342	NP_056157	Q96BP3	PPWD1_HUMAN	peptidylprolyl isomerase domain and WD repeat	289	WD 4.				protein folding	catalytic step 2 spliceosome	peptidyl-prolyl cis-trans isomerase activity			ovary(1)	1		Lung NSC(167;7.21e-05)|Prostate(74;0.0174)|Ovarian(174;0.186)		Lung(70;0.00451)		GTATGTTTTTCACCAGATGGG	0.333													29	111					0	0	0.000409698	0	0
CD180	4064	broad.mit.edu	37	5	66480226	66480226	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr5:66480226C>T	uc003juy.2	-	3	593	c.445G>A	c.(445-447)GAA>AAA	p.E149K		NM_005582	NP_005573	Q99467	CD180_HUMAN	CD180 molecule precursor	149	Extracellular (Potential).				inflammatory response|innate immune response	integral to membrane|plasma membrane	receptor activity			ovary(1)	1		Lung NSC(167;4.94e-05)|Prostate(74;0.00601)|Ovarian(174;0.0654)|Breast(144;0.198)|Colorectal(97;0.234)		Lung(70;0.0046)		TCCAAGTTTTCCAGATTGTGC	0.418													37	126					0	0	0.000374591	0	0
NAIP	4671	broad.mit.edu	37	5	70308413	70308413	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr5:70308413C>T	uc003kar.1	-	4	1048	c.330G>A	c.(328-330)ACG>ACA	p.T110T	NAIP_uc003kat.1_Intron|NAIP_uc011crs.1_Silent_p.T110T|NAIP_uc003kas.1_Intron	NM_004536	NP_004527	Q13075	BIRC1_HUMAN	NLR family, apoptosis inhibitory protein isoform	110	BIR 1.				anti-apoptosis|apoptosis|nervous system development	basolateral plasma membrane|cytoplasm	caspase inhibitor activity|metal ion binding|nucleoside-triphosphatase activity|nucleotide binding			central_nervous_system(1)	1		Lung NSC(167;4.15e-05)|Prostate(74;0.00996)|Ovarian(174;0.0448)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;3.04e-60)|Epithelial(20;7.09e-58)|all cancers(19;1.13e-53)|Lung(70;0.0174)		TGGGGAGTCTCGTGAGGCCGG	0.493													14	60					0	0	0.000151284	0	0
HMGCR	3156	broad.mit.edu	37	5	74638496	74638497	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr5:74638496_74638497GG>TT	uc003kdp.2	+	2	222_223	c.66_67GG>TT	c.(64-69)GTGGGG>GTTTGG	p.G23W	HMGCR_uc011cst.1_Missense_Mutation_p.G43W|HMGCR_uc003kdq.2_Missense_Mutation_p.G23W|HMGCR_uc010izn.1_5'Flank	NM_000859	NP_000850	P04035	HMDH_HUMAN	3-hydroxy-3-methylglutaryl-Coenzyme A reductase	23	Helical; (Potential).				cholesterol biosynthetic process|coenzyme A metabolic process|germ cell migration|gonad development|isoprenoid biosynthetic process	endoplasmic reticulum membrane|integral to membrane|peroxisomal membrane	hydroxymethylglutaryl-CoA reductase (NADPH) activity|NADP binding			ovary(1)	1		all_lung(232;0.00101)|Lung NSC(167;0.00278)|Ovarian(174;0.0129)|Prostate(461;0.174)		OV - Ovarian serous cystadenocarcinoma(47;2.24e-54)	Atorvastatin(DB01076)|Bezafibrate(DB01393)|Cerivastatin(DB00439)|Fluvastatin(DB01095)|Lovastatin(DB00227)|NADH(DB00157)|Pravastatin(DB00175)|Rosuvastatin(DB01098)|Simvastatin(DB00641)	AAGTCATAGTGGGGACAGTGAC	0.436													14	679					0	0	6.4e-05	0	0
HMGCR	3156	broad.mit.edu	37	5	74643039	74643040	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr5:74643039_74643040GG>TT	uc003kdp.2	+	6	617_618	c.461_462GG>TT	c.(460-462)AGG>ATT	p.R154I	HMGCR_uc011cst.1_Missense_Mutation_p.R174I|HMGCR_uc003kdq.2_Missense_Mutation_p.R154I|HMGCR_uc010izn.1_5'UTR	NM_000859	NP_000850	P04035	HMDH_HUMAN	3-hydroxy-3-methylglutaryl-Coenzyme A reductase	154					cholesterol biosynthetic process|coenzyme A metabolic process|germ cell migration|gonad development|isoprenoid biosynthetic process	endoplasmic reticulum membrane|integral to membrane|peroxisomal membrane	hydroxymethylglutaryl-CoA reductase (NADPH) activity|NADP binding			ovary(1)	1		all_lung(232;0.00101)|Lung NSC(167;0.00278)|Ovarian(174;0.0129)|Prostate(461;0.174)		OV - Ovarian serous cystadenocarcinoma(47;2.24e-54)	Atorvastatin(DB01076)|Bezafibrate(DB01393)|Cerivastatin(DB00439)|Fluvastatin(DB01095)|Lovastatin(DB00227)|NADH(DB00157)|Pravastatin(DB00175)|Rosuvastatin(DB01098)|Simvastatin(DB00641)	GATGAAGTAAGGGAAAATATTG	0.366													20	586					0	0	6.4e-05	0	0
HMGCR	3156	broad.mit.edu	37	5	74645866	74645868	+	Splice_Site	TNP	GGG	TTT	TTT			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr5:74645866_74645868GGG>TTT	uc003kdp.2	+	7	713	c.557_splice	c.e7-1	p.G186_splice	HMGCR_uc011cst.1_Splice_Site_p.G206_splice|HMGCR_uc003kdq.2_Splice_Site_p.G186_splice|HMGCR_uc010izn.1_Splice_Site_p.G26_splice	NM_000859	NP_000850	P04035	HMDH_HUMAN	3-hydroxy-3-methylglutaryl-Coenzyme A reductase						cholesterol biosynthetic process|coenzyme A metabolic process|germ cell migration|gonad development|isoprenoid biosynthetic process	endoplasmic reticulum membrane|integral to membrane|peroxisomal membrane	hydroxymethylglutaryl-CoA reductase (NADPH) activity|NADP binding			ovary(1)	1		all_lung(232;0.00101)|Lung NSC(167;0.00278)|Ovarian(174;0.0129)|Prostate(461;0.174)		OV - Ovarian serous cystadenocarcinoma(47;2.24e-54)	Atorvastatin(DB01076)|Bezafibrate(DB01393)|Cerivastatin(DB00439)|Fluvastatin(DB01095)|Lovastatin(DB00227)|NADH(DB00157)|Pravastatin(DB00175)|Rosuvastatin(DB01098)|Simvastatin(DB00641)	TCTCTAACCAGGGGTACGTCAGC	0.389													13	494					0	0	6.4e-05	0	0
HMGCR	3156	broad.mit.edu	37	5	74645947	74645948	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr5:74645947_74645948CC>AA	uc003kdp.2	+	7	793_794	c.637_638CC>AA	c.(637-639)CCA>AAA	p.P213K	HMGCR_uc011cst.1_Missense_Mutation_p.P233K|HMGCR_uc003kdq.2_Missense_Mutation_p.P213K|HMGCR_uc010izn.1_Missense_Mutation_p.P53K	NM_000859	NP_000850	P04035	HMDH_HUMAN	3-hydroxy-3-methylglutaryl-Coenzyme A reductase	213	Helical; (Potential).				cholesterol biosynthetic process|coenzyme A metabolic process|germ cell migration|gonad development|isoprenoid biosynthetic process	endoplasmic reticulum membrane|integral to membrane|peroxisomal membrane	hydroxymethylglutaryl-CoA reductase (NADPH) activity|NADP binding			ovary(1)	1		all_lung(232;0.00101)|Lung NSC(167;0.00278)|Ovarian(174;0.0129)|Prostate(461;0.174)		OV - Ovarian serous cystadenocarcinoma(47;2.24e-54)	Atorvastatin(DB01076)|Bezafibrate(DB01393)|Cerivastatin(DB00439)|Fluvastatin(DB01095)|Lovastatin(DB00227)|NADH(DB00157)|Pravastatin(DB00175)|Rosuvastatin(DB01098)|Simvastatin(DB00641)	GACTTTCTTCCCAGCTTGTGTG	0.396													15	615					0	0	6.4e-05	0	0
IQGAP2	10788	broad.mit.edu	37	5	75950773	75950773	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr5:75950773G>A	uc003kek.2	+	20	2487	c.2265G>A	c.(2263-2265)GTG>GTA	p.V755V	IQGAP2_uc010izv.2_Silent_p.V308V|IQGAP2_uc011csv.1_Silent_p.V251V|IQGAP2_uc003kel.2_Silent_p.V251V	NM_006633	NP_006624	Q13576	IQGA2_HUMAN	IQ motif containing GTPase activating protein 2	755	IQ 3.				small GTPase mediated signal transduction	actin cytoskeleton	actin binding|calmodulin binding|GTPase inhibitor activity|Ras GTPase activator activity			ovary(6)|central_nervous_system(1)	7		all_lung(232;0.000514)|Lung NSC(167;0.00135)|Prostate(461;0.00838)|Ovarian(174;0.0149)		all cancers(79;1.38e-36)		ATGAAATTGTGAAAATACAGT	0.353													20	94					0	0	0.000586117	0	0
CRHBP	1393	broad.mit.edu	37	5	76254606	76254607	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr5:76254606_76254607CC>AA	uc003ker.2	+	5	865_866	c.585_586CC>AA	c.(583-588)ACCCTG>ACAATG	p.L196M	CRHBP_uc010izx.2_Missense_Mutation_p.L196M	NM_001882	NP_001873	P24387	CRHBP_HUMAN	corticotropin releasing hormone binding protein	196					female pregnancy|learning or memory|signal transduction	soluble fraction					0		all_lung(232;0.000414)|Lung NSC(167;0.0011)|Ovarian(174;0.0129)|Prostate(461;0.11)		OV - Ovarian serous cystadenocarcinoma(54;2.17e-51)|Epithelial(54;8.79e-46)|all cancers(79;2.49e-41)		GAAAGTTTACCCTGGTAGTTCC	0.386													18	630					0	0	6.4e-05	0	0
CRHBP	1393	broad.mit.edu	37	5	76259283	76259284	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr5:76259283_76259284CG>AT	uc003ker.2	+	6	1089_1090	c.809_810CG>AT	c.(808-810)CCG>CAT	p.P270H		NM_001882	NP_001873	P24387	CRHBP_HUMAN	corticotropin releasing hormone binding protein	270					female pregnancy|learning or memory|signal transduction	soluble fraction					0		all_lung(232;0.000414)|Lung NSC(167;0.0011)|Ovarian(174;0.0129)|Prostate(461;0.11)		OV - Ovarian serous cystadenocarcinoma(54;2.17e-51)|Epithelial(54;8.79e-46)|all cancers(79;2.49e-41)		TTTCATGGCCCGGGTGAGGTAT	0.446													8	323					0	0	6.4e-05	0	0
FAM151B	167555	broad.mit.edu	37	5	79817891	79817891	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr5:79817891C>T	uc003kgv.1	+	5	748	c.605C>T	c.(604-606)CCT>CTT	p.P202L	FAM151B_uc010jal.1_RNA	NM_205548	NP_991111	Q6UXP7	F151B_HUMAN	hypothetical protein LOC167555	202											0		Lung NSC(167;0.0427)|all_lung(232;0.0464)|Ovarian(174;0.113)		OV - Ovarian serous cystadenocarcinoma(54;8.21e-47)|Epithelial(54;8.3e-42)|all cancers(79;1.97e-36)		GTAACGTTCCCTGTCAGAGCA	0.343													34	72					0	0	0.000814825	0	0
VCAN	1462	broad.mit.edu	37	5	82815664	82815664	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr5:82815664C>T	uc003kii.3	+	7	1895	c.1539C>T	c.(1537-1539)TTC>TTT	p.F513F	VCAN_uc003kij.3_Intron|VCAN_uc010jau.2_Silent_p.F513F|VCAN_uc003kik.3_Intron	NM_004385	NP_004376	P13611	CSPG2_HUMAN	versican isoform 1 precursor	513	GAG-alpha (glucosaminoglycan attachment domain).				cell adhesion|cell recognition|glial cell migration	extracellular space|proteinaceous extracellular matrix	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(7)|skin(6)|lung(2)|central_nervous_system(1)	16		Lung NSC(167;0.0216)|all_lung(232;0.0251)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;2.47e-41)|Epithelial(54;2.51e-34)|all cancers(79;5.19e-29)		CCAAGGAATTCCCTGTAACTG	0.378													20	65					0	0	0.000375601	0	0
VCAN	1462	broad.mit.edu	37	5	82835754	82835754	+	Missense_Mutation	SNP	T	G	G			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr5:82835754T>G	uc003kii.3	+	8	7288	c.6932T>G	c.(6931-6933)GTT>GGT	p.V2311G	VCAN_uc003kij.3_Missense_Mutation_p.V1324G|VCAN_uc010jau.2_Intron|VCAN_uc003kik.3_Intron|VCAN_uc003kil.3_Missense_Mutation_p.V975G	NM_004385	NP_004376	P13611	CSPG2_HUMAN	versican isoform 1 precursor	2311	GAG-beta.				cell adhesion|cell recognition|glial cell migration	extracellular space|proteinaceous extracellular matrix	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(7)|skin(6)|lung(2)|central_nervous_system(1)	16		Lung NSC(167;0.0216)|all_lung(232;0.0251)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;2.47e-41)|Epithelial(54;2.51e-34)|all cancers(79;5.19e-29)		GCAAAAGAAGTTGGACCACTC	0.388													7	45					0	0	0.000274275	0	0
MEF2C	4208	broad.mit.edu	37	5	88027647	88027647	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr5:88027647G>A	uc003kjj.2	-	7	1382	c.709C>T	c.(709-711)CAA>TAA	p.Q237*	MEF2C_uc003kji.2_Nonsense_Mutation_p.Q237*|MEF2C_uc003kjk.2_Nonsense_Mutation_p.Q237*|MEF2C_uc003kjm.2_Nonsense_Mutation_p.Q235*|MEF2C_uc003kjl.2_Nonsense_Mutation_p.Q255*	NM_002397	NP_002388	Q06413	MEF2C_HUMAN	myocyte enhancer factor 2C isoform 1	237					apoptosis|B cell proliferation|innate immune response|learning or memory|muscle cell differentiation|muscle organ development|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of transcription from RNA polymerase II promoter|nerve growth factor receptor signaling pathway|neuron development|positive regulation of muscle cell differentiation|positive regulation of survival gene product expression|positive regulation of transcription from RNA polymerase II promoter|regulation of germinal center formation|regulation of megakaryocyte differentiation|regulation of synaptic activity|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	nuclear speck	activating transcription factor binding|protein heterodimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			lung(3)|breast(2)|ovary(1)|large_intestine(1)	7		all_cancers(142;6.67e-05)|all_epithelial(76;7.77e-07)|Lung NSC(167;0.00566)|all_lung(232;0.00732)|Colorectal(57;0.0959)|Ovarian(174;0.1)		OV - Ovarian serous cystadenocarcinoma(54;1.04e-33)|Epithelial(54;1.6e-28)|all cancers(79;2.9e-25)		GATTTTGCTTGCATATTCTTG	0.433										HNSCC(66;0.2)			5	23					0	0	0.000602214	0	0
NR2F1	7025	broad.mit.edu	37	5	92924011	92924011	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr5:92924011C>T	uc003kkj.2	+	2	2539	c.852C>T	c.(850-852)GCC>GCT	p.A284A		NM_005654	NP_005645	P10589	COT1_HUMAN	nuclear receptor subfamily 2, group F, member 1	284					negative regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	ligand-regulated transcription factor activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|transcription coactivator activity|zinc ion binding			urinary_tract(1)|ovary(1)|lung(1)	3		all_cancers(142;1.62e-05)|all_epithelial(76;1.51e-07)|all_lung(232;0.0126)|Lung NSC(167;0.0155)|Ovarian(174;0.0218)|Prostate(281;0.173)|Colorectal(57;0.19)		UCEC - Uterine corpus endometrioid carcinoma (5;0.0416)|all cancers(79;9.57e-18)		GCCTGCATGCCTCGCCCATGT	0.667													10	37					0	0	0.000151284	0	0
TTC37	9652	broad.mit.edu	37	5	94863796	94863796	+	Missense_Mutation	SNP	C	G	G			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr5:94863796C>G	uc003klb.2	-	13	1325	c.1055G>C	c.(1054-1056)TGT>TCT	p.C352S	TTC37_uc010jbf.1_Missense_Mutation_p.C304S	NM_014639	NP_055454	Q6PGP7	TTC37_HUMAN	tetratricopeptide repeat domain 37	352							binding			ovary(3)|pancreas(1)	4						CAAATGAAGACAAAGATTCCT	0.383													13	36					0	0	0.000219431	0	0
PCSK1	5122	broad.mit.edu	37	5	95757642	95757642	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr5:95757642C>T	uc003kls.1	-	5	768	c.562G>A	c.(562-564)GAT>AAT	p.D188N		NM_000439	NP_000430	P29120	NEC1_HUMAN	proprotein convertase subtilisin/kexin type 1	188	Catalytic.				cell-cell signaling|cellular nitrogen compound metabolic process|energy reserve metabolic process|hormone biosynthetic process|peptide biosynthetic process|peptide hormone processing|regulation of insulin secretion	extracellular space|stored secretory granule|transport vesicle	serine-type endopeptidase activity			ovary(2)	2		all_cancers(142;2.67e-06)|all_epithelial(76;6.92e-09)|all_lung(232;0.00307)|Lung NSC(167;0.00452)|Ovarian(225;0.0112)|Colorectal(57;0.0341)|Breast(839;0.244)		all cancers(79;3.44e-16)	Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	TCATTAAAATCATAGCTAGCC	0.328													42	165					0	0	0.000680045	0	0
EPB41L4A	64097	broad.mit.edu	37	5	111541123	111541124	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr5:111541123_111541124GG>TT	uc003kpv.1	-	14	1530_1531	c.1256_1257CC>AA	c.(1255-1257)CCC>CAA	p.P419Q	EPB41L4A_uc003kpp.1_Missense_Mutation_p.P46Q	NM_022140	NP_071423	Q9HCS5	E41LA_HUMAN	erythrocyte protein band 4.1-like 4	419						cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding			ovary(1)	1		all_cancers(142;4.93e-06)|all_epithelial(76;2.28e-08)|Prostate(80;0.000244)|Colorectal(10;0.000788)|Ovarian(225;0.0448)|Lung NSC(167;0.126)|all_lung(232;0.135)		OV - Ovarian serous cystadenocarcinoma(64;6.24e-09)|Epithelial(69;1.43e-07)|all cancers(49;2.78e-05)|COAD - Colon adenocarcinoma(37;0.0467)|Colorectal(14;0.0791)		TTTACCTCTGGGGGCCATTTTC	0.391													11	500					0	0	6.4e-05	0	0
EPB41L4A	64097	broad.mit.edu	37	5	111541138	111541139	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr5:111541138_111541139CC>AA	uc003kpv.1	-	14	1515_1516	c.1241_1242GG>TT	c.(1240-1242)TGG>TTT	p.W414F	EPB41L4A_uc003kpp.1_Missense_Mutation_p.W41F	NM_022140	NP_071423	Q9HCS5	E41LA_HUMAN	erythrocyte protein band 4.1-like 4	414						cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding			ovary(1)	1		all_cancers(142;4.93e-06)|all_epithelial(76;2.28e-08)|Prostate(80;0.000244)|Colorectal(10;0.000788)|Ovarian(225;0.0448)|Lung NSC(167;0.126)|all_lung(232;0.135)		OV - Ovarian serous cystadenocarcinoma(64;6.24e-09)|Epithelial(69;1.43e-07)|all cancers(49;2.78e-05)|COAD - Colon adenocarcinoma(37;0.0467)|Colorectal(14;0.0791)		CATTTTCTTCCCACGGTGCATG	0.351													13	534					0	0	6.4e-05	0	0
APC	324	broad.mit.edu	37	5	112178058	112178058	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr5:112178058C>T	uc010jby.2	+	16	7147	c.6767C>T	c.(6766-6768)CCA>CTA	p.P2256L	APC_uc011cvt.1_Missense_Mutation_p.P2238L|APC_uc003kpz.3_Missense_Mutation_p.P2256L|APC_uc003kpy.3_Missense_Mutation_p.P2256L|APC_uc010jbz.2_Missense_Mutation_p.P1973L|APC_uc010jca.2_Missense_Mutation_p.P1556L	NM_001127511	NP_001120983	P25054	APC_HUMAN	adenomatous polyposis coli	2256	Ser-rich.				canonical Wnt receptor signaling pathway|cell adhesion|cell cycle arrest|cell migration|cellular component disassembly involved in apoptosis|cytokinesis after mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cyclin-dependent protein kinase activity|negative regulation of microtubule depolymerization|positive regulation of apoptosis|positive regulation of cell migration|positive regulation of pseudopodium assembly|protein complex assembly|regulation of attachment of spindle microtubules to kinetochore|response to DNA damage stimulus|tight junction assembly	adherens junction|APC-Axin-1-beta-catenin complex|Axin-APC-beta-catenin-GSK3B complex|beta-catenin destruction complex|centrosome|cytosol|kinetochore|lamellipodium|lateral plasma membrane|nucleus|ruffle membrane|tight junction	beta-catenin binding|gamma-catenin binding|microtubule plus-end binding|protein kinase binding|protein kinase regulator activity	p.?(1)		large_intestine(2123)|stomach(123)|soft_tissue(55)|small_intestine(34)|breast(26)|pancreas(25)|urinary_tract(20)|lung(19)|thyroid(18)|liver(13)|central_nervous_system(10)|ovary(9)|skin(7)|upper_aerodigestive_tract(6)|adrenal_gland(6)|bone(6)|NS(5)|prostate(4)|endometrium(3)|kidney(1)|oesophagus(1)|biliary_tract(1)	2515		all_cancers(142;3.01e-27)|all_epithelial(76;2.3e-18)|all_hematologic(541;4.32e-09)|Ovarian(225;1.78e-06)|Lung NSC(167;0.000195)|Breast(839;0.000231)|all_lung(232;0.000247)|Colorectal(10;0.000355)|Prostate(80;0.00133)		OV - Ovarian serous cystadenocarcinoma(64;1.09e-113)|Epithelial(69;3.79e-112)|all cancers(49;1.67e-104)|BRCA - Breast invasive adenocarcinoma(61;0.00136)|COAD - Colon adenocarcinoma(37;0.00155)|Colorectal(14;0.00191)		CTTAAGACTCCAGCCTCCAAA	0.478		12	D|Mis|N|F|S		colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS	colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS			Hereditary_Desmoid_Disease|Familial_Adenomatous_Polyposis|Turcot_syndrome	TSP Lung(16;0.13)			21	29					0	0	0.000295444	0	0
TSSK1B	83942	broad.mit.edu	37	5	112769888	112769888	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr5:112769888C>T	uc003kqm.2	-	1	841	c.649G>A	c.(649-651)GAC>AAC	p.D217N	MCC_uc003kql.3_Intron	NM_032028	NP_114417	Q9BXA7	TSSK1_HUMAN	testis-specific serine kinase 1	217	Protein kinase.				cell differentiation|multicellular organismal development|spermatogenesis		ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(2)|skin(2)|stomach(1)	5		all_cancers(142;0.0138)|all_epithelial(76;0.000445)|Colorectal(10;0.00814)|Prostate(80;0.0115)|Ovarian(225;0.156)		Epithelial(69;4.15e-08)|OV - Ovarian serous cystadenocarcinoma(64;4.49e-08)|all cancers(49;3.2e-06)|COAD - Colon adenocarcinoma(37;0.0371)|Colorectal(14;0.0449)		TTGGAGTCGTCGTAGGGCATG	0.577													12	40					0	0	0.000151284	0	0
SEMA6A	57556	broad.mit.edu	37	5	115813769	115813769	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr5:115813769G>A	uc010jck.2	-	14	2218	c.1509C>T	c.(1507-1509)TTC>TTT	p.F503F	SEMA6A_uc003krx.3_Silent_p.F503F|SEMA6A_uc003krw.3_Silent_p.F35F|SEMA6A_uc010jcj.2_Silent_p.F47F	NM_020796	NP_065847	Q9H2E6	SEM6A_HUMAN	sema domain, transmembrane domain (TM), and	503	Sema.|Extracellular (Potential).				apoptosis|axon guidance|cell surface receptor linked signaling pathway|cytoskeleton organization|organ morphogenesis	axon|integral to membrane|plasma membrane	receptor activity			ovary(2)	2		all_cancers(142;0.00316)|all_epithelial(76;5.71e-05)|Prostate(80;0.00845)|Ovarian(225;0.0796)|Lung NSC(810;0.171)|all_lung(232;0.203)		OV - Ovarian serous cystadenocarcinoma(64;1.59e-08)|Epithelial(69;2e-08)|all cancers(49;5.7e-08)|COAD - Colon adenocarcinoma(49;0.151)		CACAGGTAGAGAACGCAACAT	0.448													18	40					0	0	0.00074312	0	0
GRAMD3	65983	broad.mit.edu	37	5	125816369	125816369	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr5:125816369C>T	uc003ktu.2	+	8	1135	c.705C>T	c.(703-705)TTC>TTT	p.F235F	GRAMD3_uc011cwt.1_Silent_p.F250F|GRAMD3_uc011cwv.1_Silent_p.F243F|GRAMD3_uc011cww.1_Silent_p.F131F|GRAMD3_uc011cwx.1_RNA|GRAMD3_uc011cwy.1_Silent_p.F126F|GRAMD3_uc011cwz.1_Silent_p.F219F|GRAMD3_uc011cwu.1_Silent_p.F219F	NM_023927	NP_076416	Q96HH9	GRAM3_HUMAN	GRAM domain containing 3 isoform 2	235										central_nervous_system(1)	1		Prostate(80;0.0928)	KIRC - Kidney renal clear cell carcinoma(527;0.0584)|Kidney(363;0.0934)	Epithelial(69;0.0401)|OV - Ovarian serous cystadenocarcinoma(64;0.0604)|all cancers(49;0.108)		AAAACAGTTTCCGAGCAGACC	0.398													11	69					0	0	0.000151284	0	0
ADAMTS19	171019	broad.mit.edu	37	5	128977597	128977597	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr5:128977597G>A	uc003kvb.1	+	11	1798	c.1798G>A	c.(1798-1800)GAA>AAA	p.E600K	ADAMTS19_uc010jdh.1_RNA	NM_133638	NP_598377	Q8TE59	ATS19_HUMAN	ADAM metallopeptidase with thrombospondin type 1	600	Disintegrin.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(5)|breast(2)|lung(1)|skin(1)	9		all_cancers(142;0.0148)|Prostate(80;0.0494)|Breast(839;0.238)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	OV - Ovarian serous cystadenocarcinoma(64;0.222)		AGGTGAGAAAGAATGCAGAAC	0.388													9	38					0	0	0.000673444	0	0
TGFBI	7045	broad.mit.edu	37	5	135382100	135382100	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr5:135382100G>A	uc003lbf.3	+	4	536	c.375G>A	c.(373-375)ACG>ACA	p.T125T	TGFBI_uc003lbg.3_5'UTR|TGFBI_uc003lbh.3_5'UTR|TGFBI_uc011cyb.1_5'UTR	NM_000358	NP_000349	Q15582	BGH3_HUMAN	transforming growth factor, beta-induced, 68kDa	125	FAS1 1.		Missing (associated with Leu-124 in atypical granular dystrophy; French granular variant).		angiogenesis|cell adhesion|cell proliferation|negative regulation of cell adhesion|response to stimulus|visual perception	extracellular space|proteinaceous extracellular matrix	integrin binding			breast(3)|ovary(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			CGGACCGCACGGAGAAGCTGA	0.607													12	23					0	0	0.00010058	0	0
TRPC7	57113	broad.mit.edu	37	5	135587547	135587547	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr5:135587547C>T	uc003lbn.1	-	5	1369	c.1366G>A	c.(1366-1368)GAA>AAA	p.E456K	TRPC7_uc010jef.1_Missense_Mutation_p.E393K|TRPC7_uc010jeg.1_RNA|TRPC7_uc010jeh.1_Missense_Mutation_p.E387K|TRPC7_uc010jei.1_Missense_Mutation_p.E332K|TRPC7_uc010jej.1_Missense_Mutation_p.E8K	NM_020389	NP_065122	Q9HCX4	TRPC7_HUMAN	transient receptor potential cation channel,	457	Cytoplasmic (Potential).				axon guidance|platelet activation	integral to membrane|plasma membrane	calcium channel activity|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			TCCCAGATTTCCTTGCATTCG	0.542													8	33					0	0	0.000274275	0	0
TRPC7	57113	broad.mit.edu	37	5	135692426	135692426	+	Missense_Mutation	SNP	G	A	A	rs138178870	by1000genomes	TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr5:135692426G>A	uc003lbn.1	-	1	650	c.647C>T	c.(646-648)TCG>TTG	p.S216L	TRPC7_uc010jef.1_Missense_Mutation_p.S208L|TRPC7_uc010jeg.1_RNA|TRPC7_uc010jeh.1_Missense_Mutation_p.S208L|TRPC7_uc010jei.1_Missense_Mutation_p.S208L|TRPC7_uc010jej.1_5'UTR	NM_020389	NP_065122	Q9HCX4	TRPC7_HUMAN	transient receptor potential cation channel,	217	Cytoplasmic (Potential).				axon guidance|platelet activation	integral to membrane|plasma membrane	calcium channel activity|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			GTTCATGCGCGAGCGCGAGTG	0.612													9	32					0	0	0.000274275	0	0
BRD8	10902	broad.mit.edu	37	5	137476450	137476450	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr5:137476450G>A	uc003lcf.1	-	26	3614	c.3559C>T	c.(3559-3561)CAT>TAT	p.H1187Y	BRD8_uc003lcc.1_Intron|NME5_uc003lce.2_5'Flank	NM_139199	NP_631938	Q9H0E9	BRD8_HUMAN	bromodomain containing 8 isoform 2	1187	Bromo 2.				cell surface receptor linked signaling pathway|histone H2A acetylation|histone H4 acetylation|regulation of growth|regulation of transcription from RNA polymerase II promoter	mitochondrion|NuA4 histone acetyltransferase complex	sequence-specific DNA binding transcription factor activity|thyroid hormone receptor activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0109)			TATACATGATGATCAGAGTCA	0.463													97	231					0	0	0.000781405	0	0
KDM3B	51780	broad.mit.edu	37	5	137726914	137726914	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr5:137726914C>T	uc003lcy.1	+	8	1793	c.1593C>T	c.(1591-1593)TCC>TCT	p.S531S	KDM3B_uc010jew.1_Silent_p.S187S|KDM3B_uc011cys.1_Intron	NM_016604	NP_057688	Q7LBC6	KDM3B_HUMAN	jumonji domain containing 1B	531					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			ovary(3)|upper_aerodigestive_tract(2)|lung(2)|kidney(2)|central_nervous_system(1)|skin(1)	11						AATGCATGTCCCAAACTTTAC	0.428													15	39					0	0	0.000422831	0	0
PCDHA11	56138	broad.mit.edu	37	5	140250010	140250010	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr5:140250010C>T	uc003lia.2	+	1	2180	c.1322C>T	c.(1321-1323)TCC>TTC	p.S441F	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc011dae.1_Missense_Mutation_p.S441F	NM_018902	NP_061725	Q9Y5I1	PCDAB_HUMAN	protocadherin alpha 11 isoform 1 precursor	441	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCCAGGGTATCCGTGGAGGTG	0.637													24	76					0	0	0.00047179	0	0
PCDHA13	56136	broad.mit.edu	37	5	140264055	140264055	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr5:140264055G>A	uc003lif.2	+	1	2202	c.2202G>A	c.(2200-2202)CCG>CCA	p.P734P	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Silent_p.P734P|PCDHA13_uc003lid.2_Silent_p.P734P	NM_018904	NP_061727	Q9Y5I0	PCDAD_HUMAN	protocadherin alpha 13 isoform 1 precursor	734	Cytoplasmic (Potential).|PXXP 1.|6 X 4 AA repeats of P-X-X-P.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|skin(2)|central_nervous_system(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGTGCGCGCCGGGCAAGCCCA	0.682													27	65					0	0	0.000191422	0	0
PCDHAC2	56134	broad.mit.edu	37	5	140347776	140347776	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr5:140347776C>T	uc003lii.2	+	1	1665	c.1425C>T	c.(1423-1425)TCC>TCT	p.S475S	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Intron|PCDHA13_uc003lif.2_Intron|PCDHAC1_uc003lih.2_Intron|PCDHAC2_uc011dag.1_Silent_p.S475S	NM_018899	NP_061722	Q9Y5I4	PCDC2_HUMAN	protocadherin alpha subfamily C, 2 isoform 1	475	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACTCCTATTCCATCTACATAC	0.498													40	147					0	0	0.000781405	0	0
PCDHGA4	56111	broad.mit.edu	37	5	140736134	140736134	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr5:140736134C>T	uc003ljq.1	+	1	1367	c.1367C>T	c.(1366-1368)TCC>TTC	p.S456F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljp.1_Missense_Mutation_p.S456F	NM_018917	NP_061740	Q9Y5G9	PCDG4_HUMAN	protocadherin gamma subfamily A, 4 isoform 1	456	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCTCATGCTTCCTACTCTGCT	0.483													46	47					0	0	0.000781405	0	0
PCDHGB3	56102	broad.mit.edu	37	5	140750030	140750030	+	Silent	SNP	T	C	C			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr5:140750030T>C	uc003ljw.1	+	1	69	c.69T>C	c.(67-69)TCT>TCC	p.S23S	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc011dat.1_Silent_p.S23S	NM_018924	NP_061747	Q9Y5G1	PCDGF_HUMAN	protocadherin gamma subfamily B, 3 isoform 1	23					homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCCTGCTCTCTTTGTTAGACC	0.582													9	31					0	0	0.000442599	0	0
SPINK13	153218	broad.mit.edu	37	5	147649650	147649650	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr5:147649650C>T	uc003lpc.2	+	2	77	c.15C>T	c.(13-15)CCC>CCT	p.P5P	uc003lpb.1_Intron|SPINK13_uc010jgt.2_RNA	NM_001040129	NP_001035218	Q1W4C9	ISK13_HUMAN	serine PI Kazal type 5-like 3 precursor	5						extracellular region	serine-type endopeptidase inhibitor activity				0						CTGCCTTTCCCCACAAGATTA	0.398													61	84					0	0	0.000781405	0	0
ADRB2	154	broad.mit.edu	37	5	148206853	148206853	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr5:148206853C>T	uc003lpr.1	+	1	698	c.459C>T	c.(457-459)ATC>ATT	p.I153I	SH3TC2_uc003lpp.1_Intron	NM_000024	NP_000015	P07550	ADRB2_HUMAN	adrenergic, beta-2-, receptor, surface	153	Helical; Name=4.				activation of transmembrane receptor protein tyrosine kinase activity|desensitization of G-protein coupled receptor protein signaling pathway by arrestin|endosome to lysosome transport|positive regulation of MAPKKK cascade|receptor-mediated endocytosis	endosome|integral to plasma membrane|lysosome|receptor complex	beta2-adrenergic receptor activity|norepinephrine binding|potassium channel regulator activity|protein homodimerization activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)		Alprenolol(DB00866)|Arformoterol(DB01274)|Bambuterol(DB01408)|Bisoprolol(DB00612)|Bitolterol(DB00901)|Bretylium(DB01158)|Carteolol(DB00521)|Carvedilol(DB01136)|Clenbuterol(DB01407)|Desipramine(DB01151)|Epinephrine(DB00668)|Fenoterol(DB01288)|Formoterol(DB00983)|Isoproterenol(DB01064)|Labetalol(DB00598)|Levobunolol(DB01210)|Metipranolol(DB01214)|Nadolol(DB01203)|Norepinephrine(DB00368)|Orciprenaline(DB00816)|Oxprenolol(DB01580)|Penbutolol(DB01359)|Pindolol(DB00960)|Pirbuterol(DB01291)|Procaterol(DB01366)|Propranolol(DB00571)|Pseudoephedrine(DB00852)|Ritodrine(DB00867)|Salbutamol(DB01001)|Salmeterol(DB00938)|Terbutaline(DB00871)|Timolol(DB00373)	CCCGGGTGATCATTCTGATGG	0.532													55	70					0	0	0.000781405	0	0
PDE6A	5145	broad.mit.edu	37	5	149310691	149310691	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr5:149310691G>A	uc003lrg.3	-	4	878	c.758C>T	c.(757-759)ACG>ATG	p.T253M		NM_000440	NP_000431	P16499	PDE6A_HUMAN	phosphodiesterase 6A	253					cytosolic calcium ion homeostasis|GMP metabolic process|platelet activation|signal transduction|visual perception	cytosol|plasma membrane	3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000962)|Kidney(363;0.00147)			TTCGATGTCCGTAAGTTCTTC	0.443													14	52					0	0	0.000422831	0	0
PDGFRB	5159	broad.mit.edu	37	5	149513489	149513489	+	Missense_Mutation	SNP	G	C	C	rs41287114	byFrequency	TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr5:149513489G>C	uc003lro.2	-	5	1183	c.714C>G	c.(712-714)ATC>ATG	p.I238M	PDGFRB_uc010jhd.2_Missense_Mutation_p.I77M|PDGFRB_uc011dcg.1_Missense_Mutation_p.I238M	NM_002609	NP_002600	P09619	PGFRB_HUMAN	platelet-derived growth factor receptor beta	238	Extracellular (Potential).|Ig-like C2-type 3.				aorta morphogenesis|cardiac myofibril assembly|hemopoiesis|metanephric glomerular capillary formation|metanephric glomerular mesangial cell proliferation involved in metanephros development|peptidyl-tyrosine phosphorylation|positive regulation of calcium ion import|positive regulation of chemotaxis|positive regulation of DNA biosynthetic process|positive regulation of ERK1 and ERK2 cascade|positive regulation of MAP kinase activity|positive regulation of metanephric mesenchymal cell migration by platelet-derived growth factor receptor-beta signaling pathway|positive regulation of mitosis|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of reactive oxygen species metabolic process|positive regulation of smooth muscle cell migration|positive regulation of smooth muscle cell proliferation|protein autophosphorylation|regulation of actin cytoskeleton organization|retina vasculature development in camera-type eye|smooth muscle cell chemotaxis	apical plasma membrane|cytoplasm|integral to plasma membrane|nucleus	ATP binding|platelet activating factor receptor activity|platelet-derived growth factor beta-receptor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|vascular endothelial growth factor receptor activity			central_nervous_system(4)|lung(4)|breast(3)|stomach(2)|prostate(2)|large_intestine(1)|ovary(1)	17		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)		Becaplermin(DB00102)|Dasatinib(DB01254)|Imatinib(DB00619)|Sorafenib(DB00398)|Sunitinib(DB01268)	CCTCATTCCCGATCACAATGC	0.562			T	ETV6|TRIP11|HIP1|RAB5EP|H4|NIN|HCMOGT-1|PDE4DIP	MPD|AML|CMML|CML								7	52					0	0	0.000274275	0	0
DCTN4	51164	broad.mit.edu	37	5	150112977	150112977	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr5:150112977G>A	uc003lsv.2	-	5	592	c.490C>T	c.(490-492)CGC>TGC	p.R164C	DCTN4_uc003lsu.2_Missense_Mutation_p.R107C|DCTN4_uc010jhi.2_Missense_Mutation_p.R164C|DCTN4_uc010jhj.2_RNA|DCTN4_uc011dck.1_Missense_Mutation_p.R107C	NM_016221	NP_057305	Q9UJW0	DCTN4_HUMAN	dynactin 4 (p62) isoform b	164	Potential.					centrosome|nucleus	protein N-terminus binding			central_nervous_system(1)	1		Medulloblastoma(196;0.167)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			AGTTTCTTGCGATCTCGCTCA	0.398													27	94					0	0	0.00058488	0	0
ZNF300	91975	broad.mit.edu	37	5	150275090	150275090	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr5:150275090G>A	uc003lsy.1	-	6	1978	c.1711C>T	c.(1711-1713)CAT>TAT	p.H571Y	IRGM_uc011dcl.1_Intron	NM_052860	NP_443092	Q96RE9	ZN300_HUMAN	zinc finger protein 300	571	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2		Medulloblastoma(196;0.109)|all_hematologic(541;0.131)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TCCCCAGTATGAATCCTCTGA	0.433													10	20					0	0	0.000442599	0	0
FAT2	2196	broad.mit.edu	37	5	150925776	150925776	+	Missense_Mutation	SNP	G	C	C			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr5:150925776G>C	uc003lue.3	-	9	4925	c.4912C>G	c.(4912-4914)CCA>GCA	p.P1638A	GM2A_uc011dcs.1_Intron	NM_001447	NP_001438	Q9NYQ8	FAT2_HUMAN	FAT tumor suppressor 2 precursor	1638	Extracellular (Potential).|Cadherin 14.				epithelial cell migration|homophilic cell adhesion	cell-cell adherens junction|integral to membrane|nucleus	calcium ion binding			ovary(4)|upper_aerodigestive_tract(1)|skin(1)	6		Medulloblastoma(196;0.0912)|all_hematologic(541;0.104)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TGCCATTGTGGGGAGCCTTGA	0.468													4	62					0	0	0.000602214	0	0
GLRA1	2741	broad.mit.edu	37	5	151235895	151235895	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr5:151235895C>T	uc003lut.2	-	5	813	c.526G>A	c.(526-528)GAT>AAT	p.D176N	GLRA1_uc003lur.2_Missense_Mutation_p.D176N|GLRA1_uc003lus.2_Missense_Mutation_p.D93N	NM_001146040	NP_001139512	P23415	GLRA1_HUMAN	glycine receptor, alpha 1 isoform 1 precursor	176	Extracellular (Probable).				muscle contraction|negative regulation of transmission of nerve impulse|neuropeptide signaling pathway|positive regulation of acrosome reaction|regulation of membrane potential|startle response	cell junction|chloride channel complex|integral to plasma membrane|intracellular membrane-bounded organelle|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|glycine binding|protein binding|receptor activity|taurine binding|transmitter-gated ion channel activity			ovary(1)|central_nervous_system(1)	2		all_hematologic(541;0.0341)|Medulloblastoma(196;0.0912)	Kidney(363;0.000171)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Ethanol(DB00898)|Glycine(DB00145)|Halothane(DB01159)|Isoflurane(DB00753)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	GTCTGGACATCCATGGGGAAA	0.488													21	52					0	0	0.000586117	0	0
HAVCR1	26762	broad.mit.edu	37	5	156476100	156476101	+	Nonsense_Mutation	DNP	CC	AA	AA			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr5:156476100_156476101CC>AA	uc010jij.1	-	5	914_915	c.729_730GG>TT	c.(727-732)CAGGGA>CATTGA	p.243_244QG>H*	HAVCR1_uc011ddl.1_Nonsense_Mutation_p.74_75QG>H*|HAVCR1_uc003lwi.2_Nonsense_Mutation_p.243_244QG>H*	NM_001099414	NP_001092884	Q96D42	HAVR1_HUMAN	hepatitis A virus cellular receptor 1	238_239	Extracellular (Potential).				interspecies interaction between organisms	integral to membrane	receptor activity			ovary(1)|skin(1)	2	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.0999)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			CTTATTGCTCCCTGCAGTGTCG	0.46													13	402					0	0	6.4e-05	0	0
HAVCR2	84868	broad.mit.edu	37	5	156515988	156515989	+	Splice_Site	DNP	CC	AA	AA			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr5:156515988_156515989CC>AA	uc003lwk.1	-	6	821	c.677_splice	c.e6-1	p.W226_splice		NM_032782	NP_116171	Q8TDQ0	HAVR2_HUMAN	T cell immunoglobulin mucin 3 precursor							integral to membrane					0	Renal(175;0.00212)	Medulloblastoma(196;0.0354)|all_neural(177;0.0999)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			ATGAGAATACCCTAGTAAGGGG	0.366													11	381					0	0	6.4e-05	0	0
FAM71B	153745	broad.mit.edu	37	5	156589674	156589674	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr5:156589674G>A	uc003lwn.2	-	2	1702	c.1602C>T	c.(1600-1602)ATC>ATT	p.I534I		NM_130899	NP_570969	Q8TC56	FA71B_HUMAN	family with sequence similarity 71, member B	534						nucleus				ovary(4)|pancreas(1)|skin(1)	6	Renal(175;0.00212)	Medulloblastoma(196;0.0523)|all_neural(177;0.21)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			AAAAAGAGCTGATCTTACTGG	0.478													132	536					0	0	0.000781405	0	0
ODZ2	57451	broad.mit.edu	37	5	167631593	167631593	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr5:167631593C>T	uc010jjd.2	+	19	3764	c.3764C>T	c.(3763-3765)CCC>CTC	p.P1255L	ODZ2_uc003lzr.3_Missense_Mutation_p.P1032L|ODZ2_uc003lzt.3_Missense_Mutation_p.P628L|ODZ2_uc010jje.2_Missense_Mutation_p.P526L	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		CGCATCTTTCCCTCTCGAAAT	0.522													13	47					0	0	0.000219431	0	0
ODZ2	57451	broad.mit.edu	37	5	167687367	167687367	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr5:167687367C>T	uc010jjd.2	+	28	7485	c.7485C>T	c.(7483-7485)TTC>TTT	p.F2495F	ODZ2_uc003lzr.3_Silent_p.F2265F|ODZ2_uc003lzt.3_Silent_p.F1868F|ODZ2_uc010jje.2_Silent_p.F1759F	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		AAATGTATTTCGTGCCTCCTC	0.428													37	90					0	0	0.000191422	0	0
PANK3	79646	broad.mit.edu	37	5	167995759	167995759	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr5:167995759G>A	uc003lzz.1	-	2	573	c.273C>T	c.(271-273)GAC>GAT	p.D91D		NM_024594	NP_078870	Q9H999	PANK3_HUMAN	pantothenate kinase 3	91					coenzyme A biosynthetic process	cytoplasm|nucleus	ATP binding|pantothenate kinase activity			ovary(1)	1	Renal(175;0.000159)|Lung NSC(126;0.0441)|all_lung(126;0.0909)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0989)|OV - Ovarian serous cystadenocarcinoma(192;0.147)|Epithelial(171;0.188)		AAGTAGGCAGGTCCTGGGTTG	0.433													23	93					0	0	0.000295444	0	0
SLIT3	6586	broad.mit.edu	37	5	168212958	168212958	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr5:168212958C>T	uc003mab.2	-	12	1525	c.1105G>A	c.(1105-1107)GAG>AAG	p.E369K	SLIT3_uc010jjg.2_Missense_Mutation_p.E369K|SLIT3_uc010jji.2_Missense_Mutation_p.E369K|SLIT3_uc003mac.1_Missense_Mutation_p.E166K	NM_003062	NP_003053	O75094	SLIT3_HUMAN	slit homolog 3 precursor	369	LRR 9.				apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			TTGACAATCTCGGTGATCTTG	0.522													8	36					0	0	0.000274275	0	0
DOCK2	1794	broad.mit.edu	37	5	169186739	169186739	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr5:169186739C>T	uc003maf.2	+	24	2487	c.2407C>T	c.(2407-2409)CTG>TTG	p.L803L	DOCK2_uc011der.1_RNA|DOCK2_uc010jjm.2_Silent_p.L295L	NM_004946	NP_004937	Q92608	DOCK2_HUMAN	dedicator of cytokinesis 2	803					actin cytoskeleton organization|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|endomembrane system|membrane	electron carrier activity|GTP binding|GTPase binding|heme binding|Rac guanyl-nucleotide exchange factor activity|T cell receptor binding			ovary(5)|pancreas(2)	7	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			CCCATCTGTCCTGCATGATGT	0.453													25	72					0	0	0.000227799	0	0
FOXI1	2299	broad.mit.edu	37	5	169533060	169533060	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr5:169533060G>A	uc003mai.3	+	1	144	c.99G>A	c.(97-99)GAG>GAA	p.E33E	FOXI1_uc003maj.3_Silent_p.E33E	NM_012188	NP_036320	Q12951	FOXI1_HUMAN	forkhead box I1 isoform a	33	Pro-rich.				epidermal cell fate specification|otic placode formation|pattern specification process|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|transcription regulatory region DNA binding			breast(3)|central_nervous_system(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0267)|all_lung(126;0.04)	Medulloblastoma(196;0.0109)|all_neural(177;0.0298)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			TCTACTATGAGAACTTCTTCC	0.677									Pendred_syndrome				4	30					0	0	3.59834e-05	0	0
FOXI1	2299	broad.mit.edu	37	5	169535068	169535068	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr5:169535068G>A	uc003mai.3	+	2	635	c.590G>A	c.(589-591)TGG>TAG	p.W197*	FOXI1_uc003maj.3_Intron	NM_012188	NP_036320	Q12951	FOXI1_HUMAN	forkhead box I1 isoform a	197	Fork-head.				epidermal cell fate specification|otic placode formation|pattern specification process|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|transcription regulatory region DNA binding			breast(3)|central_nervous_system(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0267)|all_lung(126;0.04)	Medulloblastoma(196;0.0109)|all_neural(177;0.0298)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			GGGAATTACTGGACCCTGGAC	0.438									Pendred_syndrome				30	35					0	0	0.000692331	0	0
C5orf58	133874	broad.mit.edu	37	5	169661161	169661161	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr5:169661161C>T	uc010jjn.2	+	2	105	c.22C>T	c.(22-24)CTC>TTC	p.L8F	C5orf58_uc003mal.2_RNA	NM_001102609	NP_001096079	C9J3I9	CE058_HUMAN	hypothetical protein LOC133874	8											0						TGCAGAAATTCTCCCTGCTCA	0.408													20	74					0	0	0.000175454	0	0
KCNIP1	30820	broad.mit.edu	37	5	170145872	170145872	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr5:170145872C>T	uc003mas.2	+	3	734	c.205C>T	c.(205-207)CGA>TGA	p.R69*	KCNIP1_uc003map.2_Nonsense_Mutation_p.R67*|KCNIP1_uc003mat.2_Nonsense_Mutation_p.R58*|KCNIP1_uc010jjp.2_Nonsense_Mutation_p.R30*|KCNIP1_uc010jjq.2_Nonsense_Mutation_p.R58*	NM_001034837	NP_001030009	Q9NZI2	KCIP1_HUMAN	Kv channel interacting protein 1 isoform 1	69	EF-hand 1; degenerate.				detection of calcium ion|signal transduction|synaptic transmission	plasma membrane	potassium channel activity|voltage-gated ion channel activity			skin(2)	2	Renal(175;0.000159)|Lung NSC(126;0.0191)|all_lung(126;0.0297)	Medulloblastoma(196;0.0109)|all_neural(177;0.0177)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			GGTCCTTTATCGAGGCTTCAA	0.587													15	37					0	0	0.000422831	0	0
RPL26L1	51121	broad.mit.edu	37	5	172386879	172386879	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr5:172386879G>A	uc003mcc.2	+	2	45	c.3G>A	c.(1-3)ATG>ATA	p.M1I	LOC100268168_uc011dfb.1_5'Flank|LOC100268168_uc011dfc.1_5'Flank	NM_016093	NP_057177	Q9UNX3	RL26L_HUMAN	ribosomal protein L26-like 1	1					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosol|large ribosomal subunit	structural constituent of ribosome				0	Renal(175;0.000159)|Lung NSC(126;0.00344)|all_lung(126;0.00594)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			GGGTCACCATGAAGTTCAATC	0.562											OREG0017052	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	46	68					0	0	0.000781405	0	0
STC2	8614	broad.mit.edu	37	5	172752981	172752981	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr5:172752981C>T	uc003mco.1	-	2	1494	c.184G>A	c.(184-186)GAT>AAT	p.D62N	STC2_uc003mcn.1_5'UTR	NM_003714	NP_003705	O76061	STC2_HUMAN	stanniocalcin 2 precursor	62					cell surface receptor linked signaling pathway|cell-cell signaling	extracellular region	hormone activity			skin(2)|ovary(1)	3	Renal(175;0.000159)|Lung NSC(126;0.00229)|all_lung(126;0.004)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)|Ovarian(839;0.223)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000183)			CACCCCACATCGCCAGCGTTG	0.448													69	151					0	0	0.000781405	0	0
CDHR2	54825	broad.mit.edu	37	5	176011422	176011422	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr5:176011422G>A	uc003mem.1	+	19	2206	c.2140G>A	c.(2140-2142)GGC>AGC	p.G714S	CDHR2_uc003men.1_Missense_Mutation_p.G714S	NM_017675	NP_060145	Q9BYE9	CDHR2_HUMAN	protocadherin LKC precursor	714	Cadherin 7.|Extracellular (Potential).				homophilic cell adhesion|negative regulation of cell growth	apical plasma membrane|cell junction|integral to membrane	calcium ion binding|protein binding			ovary(2)	2						AGTGCTAGTGGGCGTGGTGAA	0.612													20	60					0	0	0.000175454	0	0
TMED9	54732	broad.mit.edu	37	5	177022360	177022360	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr5:177022360C>T	uc003mhx.2	+	5	654	c.651C>T	c.(649-651)ATC>ATT	p.I217I	TMED9_uc010jko.2_RNA	NM_017510	NP_059980	Q9BVK6	TMED9_HUMAN	transmembrane emp24 protein transport domain	217	Helical; (Potential).				transport	endoplasmic reticulum membrane|ER-Golgi intermediate compartment|integral to membrane					0	all_cancers(89;0.00033)|Renal(175;0.000269)|Lung NSC(126;0.00161)|all_lung(126;0.00286)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			TCGTGGCCATCGGTGTCTGGC	0.612													28	58					0	0	0.00058488	0	0
FLT4	2324	broad.mit.edu	37	5	180036966	180036966	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr5:180036966G>A	uc003mma.3	-	28	3825	c.3746C>T	c.(3745-3747)TCC>TTC	p.S1249F	FLT4_uc003mlz.3_Missense_Mutation_p.S1249F	NM_002020	NP_002011	P35916	VGFR3_HUMAN	fms-related tyrosine kinase 4 isoform 2	1249	Cytoplasmic (Potential).				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|protein phosphatase binding|vascular endothelial growth factor receptor activity			lung(7)|skin(2)|ovary(2)|stomach(1)|central_nervous_system(1)|breast(1)|kidney(1)	15	all_cancers(89;2.21e-05)|all_epithelial(37;5.29e-06)|Renal(175;0.000159)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.114)	all_cancers(40;0.00245)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)|Ovarian(839;0.238)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.134)	Sorafenib(DB00398)|Sunitinib(DB01268)	CATCCTGGAGGAACCACGGGT	0.577									Congenital_Hereditary_Lymphedema				21	76					0	0	0.00047179	0	0
RREB1	6239	broad.mit.edu	37	6	7231105	7231105	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr6:7231105C>T	uc003mxc.2	+	10	3163	c.2773C>T	c.(2773-2775)CTG>TTG	p.L925L	RREB1_uc003mxb.2_Silent_p.L925L|RREB1_uc010jnx.2_Silent_p.L925L	NM_001003698	NP_001003698	Q92766	RREB1_HUMAN	ras responsive element binding protein 1 isoform	925					multicellular organismal development|positive regulation of transcription, DNA-dependent|Ras protein signal transduction|transcription from RNA polymerase II promoter	cytoplasm|nuclear speck	DNA binding|zinc ion binding			ovary(4)|large_intestine(2)|pancreas(2)|skin(2)|breast(1)	11	Ovarian(93;0.0398)	all_hematologic(90;0.0384)|Prostate(151;0.191)				CCCTTCTTCCCTGGTCCCCTA	0.562													7	19					0	0	0.000157383	0	0
CAGE1	285782	broad.mit.edu	37	6	7373880	7373880	+	Missense_Mutation	SNP	T	C	C			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr6:7373880T>C	uc003mxi.2	-	4	1485	c.764A>G	c.(763-765)AAC>AGC	p.N255S	CAGE1_uc003mxh.2_RNA|CAGE1_uc003mxj.2_Missense_Mutation_p.N146S|CAGE1_uc003mxk.1_Missense_Mutation_p.N146S	NM_205864	NP_995586	Q8TC20	CAGE1_HUMAN	cancer antigen 1	391	Potential.										0	Ovarian(93;0.0418)					TTTTTGCGTGTTAGCTAAAAC	0.328													34	38					0	0	0.000339439	0	0
DSP	1832	broad.mit.edu	37	6	7580752	7580752	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr6:7580752G>A	uc003mxp.1	+	23	4608	c.4329G>A	c.(4327-4329)AGG>AGA	p.R1443R	DSP_uc003mxq.1_Intron	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	1443	Central fibrous rod domain.|Potential.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		TGTCTCAGAGGAAACAGCAGC	0.498													6	47					0	0	3.59834e-05	0	0
DSP	1832	broad.mit.edu	37	6	7583465	7583465	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr6:7583465C>T	uc003mxp.1	+	24	6249	c.5970C>T	c.(5968-5970)ACC>ACT	p.T1990T	DSP_uc003mxq.1_Silent_p.T1391T	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	1990	Globular 2.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		ACAAAACAACCTTGGACAAAC	0.498													12	51					0	0	0.00010058	0	0
SYCP2L	221711	broad.mit.edu	37	6	10912947	10912947	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr6:10912947C>T	uc003mzo.2	+	13	1256	c.960C>T	c.(958-960)ATC>ATT	p.I320I	SYCP2L_uc011din.1_Silent_p.I161I|SYCP2L_uc010jow.2_5'UTR	NM_001040274	NP_001035364	Q5T4T6	SYC2L_HUMAN	synaptonemal complex protein 2-like	320						nucleus				ovary(1)|skin(1)	2	Breast(50;0.0838)|Ovarian(93;0.107)	all_hematologic(90;0.135)	Epithelial(50;0.239)			AATTTTGGATCGACTTCAACC	0.348													16	89					0	0	0.000958276	0	0
SLC17A2	10246	broad.mit.edu	37	6	25923937	25923937	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr6:25923937C>T	uc011dkb.1	-	2	309	c.226G>A	c.(226-228)GAA>AAA	p.E76K	SLC17A2_uc011dkc.1_Missense_Mutation_p.E76K|SLC17A2_uc003nfl.2_Missense_Mutation_p.E76K			O00624	NPT3_HUMAN	SubName: Full=Solute carrier family 17 (Sodium phosphate), member 2, isoform CRA_b; SubName: Full=Putative uncharacterized protein SLC17A2;	76					phosphate metabolic process	integral to plasma membrane|membrane fraction	sodium:phosphate symporter activity			ovary(1)	1						GTATCAAATTCCTTGATGGAT	0.433													79	109					0	0	0.000781405	0	0
HIST1H2BF	8343	broad.mit.edu	37	6	26199938	26199938	+	Missense_Mutation	SNP	C	G	G			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr6:26199938C>G	uc003ngx.2	+	1	152	c.152C>G	c.(151-153)CCC>CGC	p.P51R	HIST1H3D_uc003ngv.2_5'Flank|HIST1H2AD_uc003ngw.2_5'Flank	NM_003522	NP_003513	P62807	H2B1C_HUMAN	histone cluster 1, H2bf	51					defense response to bacterium|nucleosome assembly	nucleosome|nucleus	DNA binding|protein binding				0		all_hematologic(11;0.196)				CAGGTCCACCCCGACACCGGC	0.577													4	153					0	0	3.59834e-05	0	0
HIST1H3G	8355	broad.mit.edu	37	6	26271219	26271219	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr6:26271219G>A	uc003nhi.2	-	1	394	c.394C>T	c.(394-396)CGT>TGT	p.R132C	uc003nhj.2_5'Flank|HIST1H2BI_uc003nhk.2_5'Flank	NM_003534	NP_003525	P68431	H31_HUMAN	H3 histone family, member H	132					blood coagulation|nucleosome assembly|regulation of gene silencing|S phase	nucleoplasm|nucleosome	DNA binding|protein binding				0						CTCTCCCCACGAATGCGGCGA	0.502													9	77					0	0	0.000151284	0	0
ZNF323	64288	broad.mit.edu	37	6	28294168	28294168	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr6:28294168G>A	uc003nla.2	-	4	1396	c.996C>T	c.(994-996)TTC>TTT	p.F332F	ZNF323_uc003nld.2_Silent_p.F332F|ZNF323_uc010jra.2_Silent_p.F332F|ZNF323_uc003nlb.2_Silent_p.F173F|ZNF323_uc010jrb.2_Silent_p.F173F|ZNF323_uc003nlc.2_Silent_p.F332F	NM_001135216	NP_001128688	Q96LW9	ZN323_HUMAN	zinc finger protein 323	332	C2H2-type 4.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						AGCTGAGGAGGAAAGCCTTCC	0.507													31	101					0	0	0.000491102	0	0
SCAND3	114821	broad.mit.edu	37	6	28539813	28539813	+	Missense_Mutation	SNP	T	C	C			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr6:28539813T>C	uc003nlo.2	-	4	4471	c.3853A>G	c.(3853-3855)AGT>GGT	p.S1285G		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	1285					DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						ttaataacacttaaagtagag	0													15	35					0	0	0.000422831	0	0
TRIM27	5987	broad.mit.edu	37	6	28871952	28871953	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr6:28871952_28871953CG>AT	uc003nlr.2	-	8	1795_1796	c.1436_1437CG>AT	c.(1435-1437)TCG>TAT	p.S479Y	TRIM27_uc003nls.2_3'UTR|TRIM27_uc003nlt.1_3'UTR	NM_006510	NP_006501	P14373	TRI27_HUMAN	ret finger protein	479	B30.2/SPRY.				cell proliferation|negative regulation of gene expression, epigenetic|negative regulation of transcription from RNA polymerase II promoter|protein trimerization|spermatogenesis|transcription, DNA-dependent	cytoplasm|integral to plasma membrane|membrane fraction|nuclear membrane|PML body	DNA binding|protein binding|transmembrane receptor protein tyrosine kinase activity|zinc ion binding			ovary(1)	1						TTTTCCCTCCCGAGTAACTCAG	0.525			T	RET	papillary thyroid								9	88					0	0	6.4e-05	0	0
C6orf15	29113	broad.mit.edu	37	6	31079247	31079247	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr6:31079247G>A	uc003nsk.1	-	2	889	c.889C>T	c.(889-891)CCT>TCT	p.P297S		NM_014070	NP_054789	Q6UXA7	CF015_HUMAN	STG protein precursor	297	Pro-rich.										0						ACTCCAGGAGGAAATGGGTTA	0.522													18	38					0	0	0.00074312	0	0
CSNK2B	1460	broad.mit.edu	37	6	31639033	31639034	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr6:31639033_31639034CC>AA	uc003nvs.1	+	7	998_999	c.658_659CC>AA	c.(658-660)CCT>AAT	p.P220N	LY6G5B_uc003nvt.1_Missense_Mutation_p.L54M	NM_001320	NP_001311	P67870	CSK2B_HUMAN	casein kinase 2, beta polypeptide	Error:Variant_position_missing_in_P67870_after_alignment					adiponectin-mediated signaling pathway|axon guidance|cellular protein complex assembly|negative regulation of cell proliferation|regulation of DNA binding|Wnt receptor signaling pathway	cytosol|nucleus|protein kinase CK2 complex	identical protein binding|protein domain specific binding|protein kinase regulator activity|receptor binding|transcription factor binding				0						GCAGCTCATCCCTGTGCATGGT	0.53													12	479					0	0	6.4e-05	0	0
LY6G6C	80740	broad.mit.edu	37	6	31687001	31687002	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr6:31687001_31687002CC>AA	uc003nwh.2	-	3	303_304	c.249_250GG>TT	c.(247-252)CTGGGT>CTTTGT	p.G84C	LY6G6C_uc010jtd.2_RNA	NM_025261	NP_079537	O95867	LY66C_HUMAN	lymphocyte antigen 6 complex G6C precursor	84	UPAR/Ly6.					anchored to membrane|plasma membrane					0						TATGTCAGACCCAGCTTGCGGT	0.574													14	460					0	0	6.4e-05	0	0
SLC44A4	80736	broad.mit.edu	37	6	31844859	31844860	+	Splice_Site	DNP	CC	AA	AA	rs34026578		TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr6:31844859_31844860CC>AA	uc010jti.2	-	2	107	c.41_splice	c.e2-1	p.G14_splice	SLC44A4_uc011dol.1_Splice_Site|SLC44A4_uc011dom.1_Splice_Site_p.G14_splice	NM_025257	NP_079533	Q53GD3	CTL4_HUMAN	choline transporter-like protein 4							integral to membrane|plasma membrane	choline transmembrane transporter activity			large_intestine(2)|ovary(1)|central_nervous_system(1)	4					Choline(DB00122)	GACTGGCTTCCCTGAGGGACAT	0.599													10	299					0	0	6.4e-05	0	0
CFB	629	broad.mit.edu	37	6	31916215	31916216	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr6:31916215_31916216GG>TT	uc003nyj.3	+	7	1240_1241	c.962_963GG>TT	c.(961-963)TGG>TTT	p.W321F	CFB_uc011dor.1_Missense_Mutation_p.W823F|CFB_uc003nyi.2_Missense_Mutation_p.W321F	NM_001710	NP_001701	P00751	CFAB_HUMAN	complement factor B preproprotein	321	VWFA.				complement activation, alternative pathway|proteolysis	extracellular region|plasma membrane	complement binding|serine-type endopeptidase activity			skin(1)	1						CCCAAAATTTGGGTCAAAGTGT	0.475													14	518					0	0	6.4e-05	0	0
MIR1236	100302242	broad.mit.edu	37	6	31924628	31924629	+	RNA	DNP	GG	TT	TT			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr6:31924628_31924629GG>TT	hsa-mir-1236|MI0006326	-			c.89_90GG>TT			RDBP_uc003nyk.2_Intron|RDBP_uc011dot.1_Intron|RDBP_uc003nyl.1_Intron|RDBP_uc003nym.1_Intron|SKIV2L_uc003nyn.1_5'Flank|SKIV2L_uc011dou.1_5'Flank|SKIV2L_uc011dov.1_5'Flank																	0						GGAGAGACAAGGGGAAGAGGCA	0.545													15	430					0	0	6.4e-05	0	0
TNXB	7148	broad.mit.edu	37	6	32018024	32018025	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr6:32018024_32018025CC>AA	uc003nzl.2	-	27	9385_9386	c.9183_9184GG>TT	c.(9181-9186)CTGGGG>CTTTGG	p.G3062W		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	3109	Fibronectin type-III 23.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						GTCAGCTCCCCCAGGCGAGGCT	0.619													15	446					0	0	6.4e-05	0	0
ATF6B	1388	broad.mit.edu	37	6	32083517	32083517	+	Nonstop_Mutation	SNP	C	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr6:32083517C>A	uc003nzn.2	-	18	2144	c.2111G>T	c.(2110-2112)TGA>TTA	p.*704L	TNXB_uc010jts.1_Intron|ATF6B_uc003nzm.1_Intron|ATF6B_uc003nzo.2_Nonstop_Mutation_p.*701L	NM_004381	NP_004372	Q99941	ATF6B_HUMAN	activating transcription factor 6 beta isoform	704					response to unfolded protein|signal transduction	endoplasmic reticulum membrane|integral to membrane|nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						TGGCAGAGGTCAGGGATGATT	0.617													46	224					9.82405e-12	1.23518e-10	0.000781405	1	0
ATF6B	1388	broad.mit.edu	37	6	32095273	32095274	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr6:32095273_32095274CC>AA	uc003nzn.2	-	3	228_229	c.195_196GG>TT	c.(193-198)GTGGGG>GTTTGG	p.G66W	ATF6B_uc003nzo.2_Missense_Mutation_p.G63W|ATF6B_uc011dpg.1_5'UTR|ATF6B_uc011dph.1_Missense_Mutation_p.G66W	NM_004381	NP_004372	Q99941	ATF6B_HUMAN	activating transcription factor 6 beta isoform	66	Cytoplasmic (Potential).|Transcription activation.				response to unfolded protein|signal transduction	endoplasmic reticulum membrane|integral to membrane|nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						ACATCCATCCCCACGTCCAGGG	0.53													13	246					0	0	6.4e-05	0	0
SPDEF	25803	broad.mit.edu	37	6	34512073	34512073	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr6:34512073C>T	uc003ojq.1	-	2	575	c.160G>A	c.(160-162)GGC>AGC	p.G54S	SPDEF_uc011dsq.1_Missense_Mutation_p.G54S	NM_012391	NP_036523	O95238	SPDEF_HUMAN	SAM pointed domain containing ets transcription	54					negative regulation of survival gene product expression|negative regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(3)|ovary(1)|central_nervous_system(1)	5						GCGGACAGGCCCTGCTCGGGC	0.682													6	49					0	0	0.000442599	0	0
FGD2	221472	broad.mit.edu	37	6	36976697	36976697	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr6:36976697G>A	uc010jwp.1	+	2	327	c.156G>A	c.(154-156)CGG>CGA	p.R52R	FGD2_uc003onf.2_Silent_p.R52R|FGD2_uc011dtu.1_Silent_p.R52R|FGD2_uc003ong.2_5'UTR|FGD2_uc011dtv.1_5'UTR	NM_173558	NP_775829	Q7Z6J4	FGD2_HUMAN	FYVE, RhoGEF and PH domain containing 2	52					actin cytoskeleton organization|apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Cdc42 GTPase activity|regulation of cell shape|small GTPase mediated signal transduction	cytoskeleton|cytosol|early endosome membrane|Golgi apparatus|lamellipodium|nucleus|ruffle membrane	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			upper_aerodigestive_tract(1)|lung(1)|pancreas(1)	3						CAGGACCACGGGAGAAGACGA	0.632													9	26					0	0	0.000274275	0	0
KCNK5	8645	broad.mit.edu	37	6	39162039	39162039	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr6:39162039G>A	uc003oon.2	-	4	904	c.540C>T	c.(538-540)TTC>TTT	p.F180F		NM_003740	NP_003731	O95279	KCNK5_HUMAN	potassium channel, subfamily K, member 5	180	Helical; (Potential).				excretion	integral to plasma membrane	potassium channel activity|voltage-gated ion channel activity			central_nervous_system(1)|skin(1)	2						CCATGAATACGAAGGGTGGGA	0.572													11	40					0	0	6.40141e-05	0	0
TDRD6	221400	broad.mit.edu	37	6	46659643	46659643	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr6:46659643G>T	uc003oyj.2	+	1	3778	c.3778G>T	c.(3778-3780)GAA>TAA	p.E1260*	TDRD6_uc010jze.2_Nonsense_Mutation_p.E1254*	NM_001010870	NP_001010870	O60522	TDRD6_HUMAN	tudor domain containing 6	1260					cell differentiation|multicellular organismal development|spermatogenesis	chromatoid body	nucleic acid binding			breast(3)|ovary(2)|skin(1)	6			Lung(136;0.192)			AAAGAAAGAAGAAATTTCTGC	0.328													8	120					0.000157383	0.00195573	0.000157383	1	0
IL17A	3605	broad.mit.edu	37	6	52051240	52051240	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr6:52051240G>A	uc003pak.1	+	1	56	c.11G>A	c.(10-12)GGG>GAG	p.G4E		NM_002190	NP_002181	Q16552	IL17_HUMAN	interleukin 17A precursor	4					apoptosis|cell-cell signaling|fibroblast activation|immune response|inflammatory response|positive regulation of interleukin-23 production|positive regulation of osteoclast differentiation|positive regulation of transcription from RNA polymerase II promoter|protein glycosylation	extracellular space	cytokine activity				0	Lung NSC(77;0.116)					ATGACTCCTGGGAAGACCTCA	0.478													8	28					0	0	0.000157383	0	0
C6orf142	90523	broad.mit.edu	37	6	53986346	53986346	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr6:53986346C>T	uc003pcg.3	+	2	278	c.165C>T	c.(163-165)TTC>TTT	p.F55F	C6orf142_uc003pcf.2_Silent_p.F55F|C6orf142_uc003pch.3_Intron|C6orf142_uc011dwz.1_Intron|C6orf142_uc011dxa.1_Silent_p.F66F	NM_138569	NP_612636	Q5VWP3	MLIP_HUMAN	hypothetical protein LOC90523	55						nuclear envelope|PML body	protein binding				0	Lung NSC(77;0.0317)					CCTCTAAATTCCTTGTTAAAA	0.343													15	78					0	0	0.000422831	0	0
TTK	7272	broad.mit.edu	37	6	80744798	80744798	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr6:80744798G>A	uc003pjc.2	+	15	1785	c.1711G>A	c.(1711-1713)GAA>AAA	p.E571K	TTK_uc003pjb.3_Missense_Mutation_p.E570K	NM_003318	NP_003309	P33981	TTK_HUMAN	TTK protein kinase	571	Protein kinase.				mitotic cell cycle spindle assembly checkpoint|mitotic spindle organization|positive regulation of cell proliferation|positive regulation of pathway-restricted SMAD protein phosphorylation	spindle	ATP binding|identical protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(4)|stomach(2)|lung(2)|large_intestine(2)|pancreas(1)	11		all_cancers(76;0.00177)|Acute lymphoblastic leukemia(125;1.24e-05)|all_hematologic(105;0.00223)|all_epithelial(107;0.2)		BRCA - Breast invasive adenocarcinoma(397;0.0321)		TTACCGGAACGAAATAGCTTA	0.284													25	62					0	0	0.000720815	0	0
KIAA1009	22832	broad.mit.edu	37	6	84883856	84883856	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr6:84883856C>T	uc010kbp.2	-	16	2174	c.2077G>A	c.(2077-2079)GAA>AAA	p.E693K	KIAA1009_uc003pkj.3_Missense_Mutation_p.E617K|KIAA1009_uc003pki.3_Missense_Mutation_p.E79K	NM_014895	NP_055710	Q5TB80	QN1_HUMAN	KIAA1009 protein	693					cell division|mitosis	centrosome|nucleus|plasma membrane|spindle	protein binding			ovary(1)	1		all_cancers(76;1.5e-06)|Acute lymphoblastic leukemia(125;2.69e-07)|all_hematologic(105;0.000151)|all_epithelial(107;0.00258)		BRCA - Breast invasive adenocarcinoma(397;0.089)		TCAGCTGCTTCTCCAAAATGT	0.358													12	7					0	0	6.40141e-05	0	0
TBX18	9096	broad.mit.edu	37	6	85446592	85446592	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr6:85446592C>T	uc003pkl.1	-	8	1635	c.1635G>A	c.(1633-1635)GAG>GAA	p.E545E	TBX18_uc010kbq.1_Intron	NM_001080508	NP_001073977	O95935	TBX18_HUMAN	T-box 18	545					multicellular organismal development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)|pancreas(2)|lung(1)	5		all_cancers(76;0.000283)|Acute lymphoblastic leukemia(125;3.66e-08)|all_hematologic(105;8.61e-05)|all_epithelial(107;0.0858)		BRCA - Breast invasive adenocarcinoma(108;0.0267)		AAACAATTTTCTCAGGACTGG	0.498													17	48					0	0	0.000229342	0	0
SYNCRIP	10492	broad.mit.edu	37	6	86324795	86324795	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr6:86324795G>A	uc003pla.2	-	11	2092	c.1551C>T	c.(1549-1551)CCC>CCT	p.P517P	SYNCRIP_uc003pku.2_Silent_p.P517P|SYNCRIP_uc003pkw.2_Silent_p.P482P|SYNCRIP_uc003pky.2_Silent_p.P419P|SYNCRIP_uc003pkv.2_Silent_p.P517P|SYNCRIP_uc003pkx.2_Silent_p.P365P|SYNCRIP_uc003pkz.2_Silent_p.P482P	NM_006372	NP_006363	O60506	HNRPQ_HUMAN	synaptotagmin binding, cytoplasmic RNA	517	Interaction with APOBEC1.|8 X 3 AA repeats of R-G-G.				CRD-mediated mRNA stabilization|interspecies interaction between organisms	catalytic step 2 spliceosome|CRD-mediated mRNA stability complex|endoplasmic reticulum|histone pre-mRNA 3'end processing complex|microsome|nucleoplasm	nucleotide binding|protein binding			ovary(2)	2		all_cancers(76;0.000137)|Acute lymphoblastic leukemia(125;3.66e-08)|Prostate(29;8.2e-07)|all_hematologic(105;8.61e-05)|all_epithelial(107;0.0297)		BRCA - Breast invasive adenocarcinoma(108;0.0389)		CTCTACCGCGGGGAGGAGCAG	0.577													20	32					0	0	0.000229342	0	0
RNGTT	8732	broad.mit.edu	37	6	89479524	89479524	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr6:89479524G>A	uc003pmr.2	-	13	1628	c.1408C>T	c.(1408-1410)CGT>TGT	p.R470C	RNGTT_uc003pms.2_Missense_Mutation_p.R447C|RNGTT_uc011dzu.1_Missense_Mutation_p.R387C|RNGTT_uc003pmt.2_Missense_Mutation_p.R470C	NM_003800	NP_003791	O60942	MCE1_HUMAN	RNA guanylyltransferase and 5'-phosphatase	470	GTase.				interspecies interaction between organisms|mRNA capping|transcription from RNA polymerase II promoter|viral reproduction	nucleoplasm	GTP binding|mRNA guanylyltransferase activity|polynucleotide 5'-phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			upper_aerodigestive_tract(1)	1		all_cancers(76;4.07e-09)|Prostate(29;1.16e-10)|Acute lymphoblastic leukemia(125;1.49e-10)|all_hematologic(105;7.79e-07)|all_epithelial(107;6.86e-05)		BRCA - Breast invasive adenocarcinoma(108;0.151)		ATTTTTAGACGAAAATCCACA	0.358													9	19					0	0	0.000442599	0	0
FUT9	10690	broad.mit.edu	37	6	96651968	96651968	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr6:96651968C>T	uc003pop.3	+	3	1278	c.937C>T	c.(937-939)CTT>TTT	p.L313F		NM_006581	NP_006572	Q9Y231	FUT9_HUMAN	fucosyltransferase 9 (alpha (1,3)	313	Lumenal (Potential).				L-fucose catabolic process|protein glycosylation	Golgi cisterna membrane|integral to membrane	alpha(1,3)-fucosyltransferase activity			skin(4)|ovary(1)	5		all_cancers(76;4.77e-07)|Acute lymphoblastic leukemia(125;4.01e-09)|all_hematologic(75;1.25e-06)|all_epithelial(107;0.00279)|Colorectal(196;0.0356)		BRCA - Breast invasive adenocarcinoma(108;0.08)		TAAGTTATACCTTAGTTACTT	0.373													8	27					0	0	0.000157383	0	0
AIM1	202	broad.mit.edu	37	6	106969113	106969113	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr6:106969113G>A	uc003prh.2	+	2	3293	c.2806G>A	c.(2806-2808)GAT>AAT	p.D936N		NM_001624	NP_001615	Q9Y4K1	AIM1_HUMAN	absent in melanoma 1	936							sugar binding			breast(4)|ovary(2)|upper_aerodigestive_tract(1)|large_intestine(1)|skin(1)	9	Breast(9;0.0138)|all_epithelial(6;0.169)	all_cancers(87;4.67e-25)|all_epithelial(87;5.46e-21)|Acute lymphoblastic leukemia(125;2.15e-07)|all_hematologic(75;5.28e-06)|Colorectal(196;3.46e-05)|all_lung(197;5.94e-05)|Lung NSC(302;7.26e-05)|Ovarian(999;0.00473)	Epithelial(6;0.00114)|all cancers(7;0.00726)|BRCA - Breast invasive adenocarcinoma(8;0.0114)|OV - Ovarian serous cystadenocarcinoma(5;0.0305)	all cancers(137;1.73e-50)|Epithelial(106;2.42e-48)|OV - Ovarian serous cystadenocarcinoma(136;1.51e-27)|BRCA - Breast invasive adenocarcinoma(108;0.00104)|GBM - Glioblastoma multiforme(226;0.00858)		AGAAGATCTGGATTCACGAAG	0.363													16	41					0	0	0.000308642	0	0
ROS1	6098	broad.mit.edu	37	6	117686903	117686903	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr6:117686903C>T	uc003pxp.1	-	19	3013	c.2814G>A	c.(2812-2814)GGG>GGA	p.G938G	ROS1_uc011ebi.1_RNA|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935	P08922	ROS_HUMAN	proto-oncogene c-ros-1 protein precursor	938	Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	membrane fraction|sodium:potassium-exchanging ATPase complex	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(8)|ovary(6)|central_nervous_system(3)|skin(3)|stomach(2)|breast(2)|large_intestine(1)	25		all_cancers(87;0.00846)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0387)|OV - Ovarian serous cystadenocarcinoma(136;0.0954)|all cancers(137;0.137)		AGGAAAAGTTCCCTACAGGAT	0.318			T	GOPC|ROS1	glioblastoma|NSCLC								6	7					0	0	3.59834e-05	0	0
TRDN	10345	broad.mit.edu	37	6	123824976	123824976	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr6:123824976C>T	uc003pzj.1	-	8	703	c.681G>A	c.(679-681)CAG>CAA	p.Q227Q	TRDN_uc003pzk.1_Silent_p.Q227Q|TRDN_uc003pzl.1_Silent_p.Q227Q|TRDN_uc010ken.2_Silent_p.Q227Q	NM_006073	NP_006064	Q13061	TRDN_HUMAN	triadin	227	Lumenal.				muscle contraction	integral to membrane|plasma membrane|sarcoplasmic reticulum membrane	receptor binding			ovary(1)	1				GBM - Glioblastoma multiforme(226;0.184)		TCACTTTCTCCTGTTTTCCAC	0.363													4	3					0	0	0.00024832	0	0
C6orf174	387104	broad.mit.edu	37	6	127796649	127796649	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr6:127796649G>A	uc003qbd.2	-	6	3387	c.2522C>T	c.(2521-2523)ACC>ATC	p.T841I	C6orf174_uc003qbc.2_5'UTR	NM_001012279	NP_001012279	Q5TF21	CF174_HUMAN	hypothetical protein LOC387104 precursor	841						integral to membrane				breast(3)|ovary(2)|skin(1)	6				GBM - Glioblastoma multiforme(226;0.026)|all cancers(137;0.161)		GCGCGCCTCGGTGATGATGGT	0.652													51	44					0	0	0.000781405	0	0
TMEM200A	114801	broad.mit.edu	37	6	130761889	130761889	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr6:130761889G>A	uc003qca.2	+	3	1193	c.322G>A	c.(322-324)GAA>AAA	p.E108K	TMEM200A_uc010kfh.2_Missense_Mutation_p.E108K|TMEM200A_uc010kfi.2_Missense_Mutation_p.E108K|TMEM200A_uc003qcb.2_Missense_Mutation_p.E108K	NM_052913	NP_443145	Q86VY9	T200A_HUMAN	transmembrane protein 200A	108	Extracellular (Potential).					integral to membrane				ovary(1)	1				GBM - Glioblastoma multiforme(226;0.0139)|OV - Ovarian serous cystadenocarcinoma(155;0.12)		CATTCGGAATGAAGGCGGTGT	0.418													10	48					0	0	0.000673444	0	0
BCLAF1	9774	broad.mit.edu	37	6	136593187	136593187	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr6:136593187C>T	uc003qgx.1	-	8	2242	c.1989G>A	c.(1987-1989)AGG>AGA	p.R663R	BCLAF1_uc003qgw.1_Silent_p.R490R|BCLAF1_uc003qgy.1_Silent_p.R661R|BCLAF1_uc011edc.1_RNA|BCLAF1_uc011edd.1_RNA|BCLAF1_uc011ede.1_Silent_p.R661R	NM_014739	NP_055554	Q9NYF8	BCLF1_HUMAN	BCL2-associated transcription factor 1 isoform	663					induction of apoptosis|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|protein binding			ovary(1)	1	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00226)|OV - Ovarian serous cystadenocarcinoma(155;0.00331)		GGGTATGCTTCCTCAGGGTAC	0.303													5	38					0	0	3.59834e-05	0	0
MAP3K5	4217	broad.mit.edu	37	6	136935337	136935337	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr6:136935337C>T	uc003qhc.2	-	16	2599	c.2238G>A	c.(2236-2238)GAG>GAA	p.E746E	MAP3K5_uc011edj.1_5'UTR|MAP3K5_uc011edk.1_Silent_p.E591E	NM_005923	NP_005914	Q99683	M3K5_HUMAN	mitogen-activated protein kinase kinase kinase	746	Protein kinase.				activation of JUN kinase activity|activation of MAPKK activity|cellular response to hydrogen peroxide|induction of apoptosis by extracellular signals|interspecies interaction between organisms		ATP binding|caspase activator activity|magnesium ion binding|MAP kinase kinase kinase activity|protein homodimerization activity|protein phosphatase binding			ovary(2)|skin(2)|lung(1)	5	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00137)|OV - Ovarian serous cystadenocarcinoma(155;0.00569)		TGAAACCATTCTCACTGAAAG	0.393													35	76					0	0	0.000491102	0	0
VTA1	51534	broad.mit.edu	37	6	142519717	142519717	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr6:142519717C>T	uc003qiw.2	+	6	677	c.662C>T	c.(661-663)CCA>CTA	p.P221L	VTA1_uc011edt.1_RNA|VTA1_uc011edu.1_Missense_Mutation_p.P163L	NM_016485	NP_057569	Q9NP79	VTA1_HUMAN	Vps20-associated 1 homolog	221	Interaction with VPS4B (By similarity).				cellular membrane organization|endosome transport|protein transport	cytosol|endosome membrane	protein binding				0	Breast(32;0.155)			OV - Ovarian serous cystadenocarcinoma(155;1.34e-05)|GBM - Glioblastoma multiforme(68;0.00182)		GCACACGCTCCAGCTAATACA	0.433													9	33					0	0	0.000673444	0	0
PPP1R14C	81706	broad.mit.edu	37	6	150569890	150569890	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr6:150569890C>T	uc003qnt.2	+	4	573	c.432C>T	c.(430-432)ATC>ATT	p.I144I		NM_030949	NP_112211	Q8TAE6	PP14C_HUMAN	protein phosphatase 1, regulatory (inhibitor)	144					regulation of phosphorylation	cytoplasm|membrane					0		Ovarian(120;0.0284)	BRCA - Breast invasive adenocarcinoma(37;0.215)	OV - Ovarian serous cystadenocarcinoma(155;9.14e-12)		AGGAATTTATCAAAGAGCTGC	0.388													9	33					0	0	0.000274275	0	0
SYNE1	23345	broad.mit.edu	37	6	152786511	152786511	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr6:152786511C>T	uc010kiw.2	-	18	2416	c.1814G>A	c.(1813-1815)AGG>AAG	p.R605K	SYNE1_uc003qot.3_Missense_Mutation_p.R612K|SYNE1_uc003qou.3_Missense_Mutation_p.R605K|SYNE1_uc010kjb.1_Missense_Mutation_p.R588K|SYNE1_uc003qpa.1_Missense_Mutation_p.R605K|SYNE1_uc003qow.2_5'Flank|SYNE1_uc003qox.1_Missense_Mutation_p.R121K|SYNE1_uc003qoz.2_Missense_Mutation_p.R37K|SYNE1_uc003qoy.2_Missense_Mutation_p.R172K	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	605	Cytoplasmic (Potential).|HAT 1.				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		CAGCATGCTCCTCACACTCCT	0.448										HNSCC(10;0.0054)			8	19					0	0	0.000274275	0	0
TAGAP	117289	broad.mit.edu	37	6	159458043	159458044	+	Missense_Mutation	DNP	TG	CT	CT			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr6:159458043_159458044TG>CT	uc003qrz.2	-	10	1343_1344	c.1011_1012CA>AG	c.(1009-1014)GCCACA>GCAGCA	p.T338A	TAGAP_uc011eft.1_Missense_Mutation_p.T275A|TAGAP_uc003qsa.2_Missense_Mutation_p.T160A	NM_054114	NP_473455	Q8N103	TAGAP_HUMAN	T-cell activation Rho GTPase-activating protein	338					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|guanyl-nucleotide exchange factor activity			ovary(1)	1		Breast(66;0.000776)|Ovarian(120;0.0303)		OV - Ovarian serous cystadenocarcinoma(65;2.16e-16)|BRCA - Breast invasive adenocarcinoma(81;5.87e-06)		CCAGCAGCTGTGGCCATGGGCA	0.624													10	62					0	0	6.4e-05	0	0
FNDC1	84624	broad.mit.edu	37	6	159651016	159651016	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr6:159651016C>T	uc010kjv.2	+	10	1550	c.1350C>T	c.(1348-1350)TTC>TTT	p.F450F	FNDC1_uc010kjw.1_Intron	NM_032532	NP_115921	Q4ZHG4	FNDC1_HUMAN	fibronectin type III domain containing 1	450	Fibronectin type-III 4.					extracellular region				large_intestine(4)|ovary(3)|central_nervous_system(1)	8		Breast(66;0.000781)|Ovarian(120;0.0308)|Prostate(117;0.195)		OV - Ovarian serous cystadenocarcinoma(65;2.6e-16)|BRCA - Breast invasive adenocarcinoma(81;1.06e-05)		CCAAAGCCTTCATTGTCGCTA	0.488													37	141					0	0	0.000319135	0	0
FNDC1	84624	broad.mit.edu	37	6	159654273	159654273	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr6:159654273G>A	uc010kjv.2	+	11	2929	c.2729G>A	c.(2728-2730)AGG>AAG	p.R910K	FNDC1_uc010kjw.1_Missense_Mutation_p.R795K	NM_032532	NP_115921	Q4ZHG4	FNDC1_HUMAN	fibronectin type III domain containing 1	910						extracellular region				large_intestine(4)|ovary(3)|central_nervous_system(1)	8		Breast(66;0.000781)|Ovarian(120;0.0308)|Prostate(117;0.195)		OV - Ovarian serous cystadenocarcinoma(65;2.6e-16)|BRCA - Breast invasive adenocarcinoma(81;1.06e-05)		GAGGACTTAAGGAGAAGCCCG	0.612													5	10					0	0	0.000602214	0	0
MRPL18	29074	broad.mit.edu	37	6	160212136	160212136	+	Missense_Mutation	SNP	C	T	T	rs11556776		TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr6:160212136C>T	uc003qsw.3	+	2	345	c.217C>T	c.(217-219)CCC>TCC	p.P73S	TCP1_uc003qsr.2_5'Flank|TCP1_uc003qss.2_5'Flank|TCP1_uc010kjz.2_5'Flank|TCP1_uc003qst.2_5'Flank|TCP1_uc010kka.1_5'Flank|MRPL18_uc010kkb.2_RNA	NM_014161	NP_054880	Q9H0U6	RM18_HUMAN	mitochondrial ribosomal protein L18 precursor	73					rRNA transport|translation	mitochondrial ribosome	5S rRNA binding|structural constituent of ribosome				0		Breast(66;0.000776)|Ovarian(120;0.0303)		OV - Ovarian serous cystadenocarcinoma(65;1.44e-18)|BRCA - Breast invasive adenocarcinoma(81;5.79e-06)		GACGGTGTTTCCCTCCCGTGA	0.522													7	27					0	0	0.000157383	0	0
LPAL2	80350	broad.mit.edu	37	6	160932074	160932074	+	RNA	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr6:160932074C>T	uc003qtj.2	-	1		c.83G>A			LPAL2_uc011efy.1_RNA	NR_028093				Homo sapiens cDNA FLJ43922 fis, clone TESTI4012406.												0		Breast(66;0.000496)|Ovarian(120;0.0303)|Prostate(117;0.214)		OV - Ovarian serous cystadenocarcinoma(65;2.5e-17)|BRCA - Breast invasive adenocarcinoma(81;6.48e-06)		GAAAGTGTGTCCCAATCCCAG	0.418													66	74					0	0	0.000781405	0	0
LPA	4018	broad.mit.edu	37	6	160962176	160962176	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr6:160962176G>A	uc003qtl.2	-	36	5677	c.5557C>T	c.(5557-5559)CCA>TCA	p.P1853S		NM_005577	NP_005568	P08519	APOA_HUMAN	lipoprotein Lp(a) precursor	4361	Peptidase S1.				blood circulation|lipid metabolic process|lipid transport|lipoprotein metabolic process|proteolysis|receptor-mediated endocytosis	plasma lipoprotein particle	apolipoprotein binding|endopeptidase inhibitor activity|fibronectin binding|heparin binding|serine-type endopeptidase activity			ovary(3)|skin(2)|pancreas(1)	6		Breast(66;0.000496)|Ovarian(120;0.0303)|Prostate(117;0.0965)		OV - Ovarian serous cystadenocarcinoma(65;2.5e-17)|BRCA - Breast invasive adenocarcinoma(81;6.48e-06)	Aminocaproic Acid(DB00513)	ACCCACTCTGGGGATATTAAG	0.398													17	53					0	0	0.000375601	0	0
PARK2	5071	broad.mit.edu	37	6	162394449	162394449	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr6:162394449C>T	uc003qtx.3	-	6	753	c.619G>A	c.(619-621)GAA>AAA	p.E207K	PARK2_uc003qtv.3_RNA|PARK2_uc010kkd.2_Missense_Mutation_p.E16K|PARK2_uc003qtw.3_Missense_Mutation_p.E16K|PARK2_uc003qty.3_Missense_Mutation_p.E179K|PARK2_uc003qtz.3_Missense_Mutation_p.E58K|PARK2_uc010kke.1_Missense_Mutation_p.E207K	NM_004562	NP_004553	O60260	PRKN2_HUMAN	parkin isoform 1	207	SYT11 binding 1.				aggresome assembly|central nervous system development|mitochondrion degradation|negative regulation of actin filament bundle assembly|negative regulation of cell death|negative regulation of protein phosphorylation|negative regulation of release of cytochrome c from mitochondria|neuron death|positive regulation of I-kappaB kinase/NF-kappaB cascade|protein autoubiquitination|protein K48-linked ubiquitination|protein K63-linked ubiquitination|protein monoubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|regulation of autophagy|regulation of reactive oxygen species metabolic process	aggresome|cytosol|endoplasmic reticulum|Golgi apparatus|mitochondrion|nucleus|perinuclear region of cytoplasm	chaperone binding|PDZ domain binding|protein kinase binding|ubiquitin protein ligase binding|ubiquitin-protein ligase activity|zinc ion binding			upper_aerodigestive_tract(1)	1		all_cancers(1;8.13e-65)|all_epithelial(1;5.77e-64)|Colorectal(1;9.65e-15)|all_lung(1;1.66e-13)|Lung NSC(1;7.54e-11)|Melanoma(1;1.75e-09)|Breast(66;7.81e-05)|Ovarian(120;0.000981)|Prostate(117;0.0288)|Esophageal squamous(34;0.102)		UCEC - Uterine corpus endometrioid carcinoma (4;0.0663)|all cancers(1;1.9e-63)|Epithelial(1;1.5e-59)|Colorectal(1;2.16e-23)|OV - Ovarian serous cystadenocarcinoma(65;3.53e-20)|COAD - Colon adenocarcinoma(1;2.11e-15)|STAD - Stomach adenocarcinoma(1;4.64e-07)|BRCA - Breast invasive adenocarcinoma(81;1.49e-06)|READ - Rectum adenocarcinoma(1;2.95e-06)|GBM - Glioblastoma multiforme(2;7.23e-06)|Lung(1;0.00163)|KIRC - Kidney renal clear cell carcinoma(4;0.00371)|LUSC - Lung squamous cell carcinoma(1;0.00442)|Kidney(4;0.0046)		AAGAAAAATTCCTGAAAGAAA	0.398													13	39					0	0	0.00010058	0	0
MLLT4	4301	broad.mit.edu	37	6	168297634	168297634	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr6:168297634G>A	uc003qwd.2	+	10	1438	c.1296G>A	c.(1294-1296)TTG>TTA	p.L432L	MLLT4_uc003qwb.1_Silent_p.L417L|MLLT4_uc003qwc.1_Silent_p.L433L|MLLT4_uc003qwf.2_Silent_p.L118L	NM_001040001	NP_001035090	P55196	AFAD_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	433	FHA.				adherens junction organization|cell adhesion|cell junction assembly|cell-cell signaling|signal transduction	adherens junction|cell-cell junction|cytosol|nucleus	protein C-terminus binding			ovary(2)|lung(1)|kidney(1)|central_nervous_system(1)	5		Breast(66;1.07e-05)|Ovarian(120;0.024)		Epithelial(4;2.38e-32)|OV - Ovarian serous cystadenocarcinoma(33;9.99e-23)|BRCA - Breast invasive adenocarcinoma(4;1.2e-11)|GBM - Glioblastoma multiforme(31;0.00117)		CAGAAAAGTTGGATGACAACT	0.458			T	MLL	AL								5	39					0	0	0.000602214	0	0
DLL1	28514	broad.mit.edu	37	6	170592513	170592513	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr6:170592513C>T	uc003qxm.2	-	9	2324	c.1854G>A	c.(1852-1854)AAG>AAA	p.K618K		NM_005618	NP_005609	O00548	DLL1_HUMAN	delta-like 1 precursor	618	Cytoplasmic (Potential).				cell communication|cell fate determination|hemopoiesis|Notch receptor processing|Notch signaling pathway|regulation of cell adhesion	extracellular region|integral to plasma membrane	calcium ion binding|Notch binding			lung(4)|ovary(1)	5		Breast(66;5.08e-05)|Ovarian(120;0.125)|Esophageal squamous(34;0.246)		OV - Ovarian serous cystadenocarcinoma(33;6.71e-23)|BRCA - Breast invasive adenocarcinoma(81;4.81e-06)|GBM - Glioblastoma multiforme(31;0.0584)		GGAAGTCCGCCTTCTTGTTGG	0.587													22	74					0	0	0.00047179	0	0
RADIL	55698	broad.mit.edu	37	7	4917258	4917258	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr7:4917258C>T	uc003snj.1	-	2	686	c.513G>A	c.(511-513)AAG>AAA	p.K171K	RADIL_uc003sng.1_RNA|RADIL_uc011jwd.1_RNA	NM_018059	NP_060529	Q96JH8	RADIL_HUMAN	Rap GTPase interactor	171					cell adhesion|multicellular organismal development|signal transduction		protein binding			lung(2)|central_nervous_system(2)|pancreas(2)|breast(1)	7		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0986)|OV - Ovarian serous cystadenocarcinoma(56;7.41e-15)		TGTCCACCTCCTTGGCTGCCA	0.602													29	40					0	0	0.000491102	0	0
PRPS1L1	221823	broad.mit.edu	37	7	18066874	18066874	+	Missense_Mutation	SNP	C	G	G			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr7:18066874C>G	uc003stz.2	-	1	613	c.532G>C	c.(532-534)GTG>CTG	p.V178L		NM_175886	NP_787082	P21108	PRPS3_HUMAN	phosphoribosyl pyrophosphate synthetase 1-like	178					nucleoside metabolic process|ribonucleoside monophosphate biosynthetic process		ATP binding|kinase activity|magnesium ion binding|protein homodimerization activity|ribose phosphate diphosphokinase activity			ovary(1)	1	Lung NSC(10;0.0385)|all_lung(11;0.0736)					ATGGAGGTCACTCTTTTAGCT	0.463													39	57					0	0	0.000228196	0	0
HDAC9	9734	broad.mit.edu	37	7	18801862	18801862	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr7:18801862C>T	uc003suh.2	+	14	2158	c.2117C>T	c.(2116-2118)CCC>CTC	p.P706L	HDAC9_uc003sue.2_Missense_Mutation_p.P706L|HDAC9_uc011jyd.1_Missense_Mutation_p.P706L|HDAC9_uc003sui.2_Missense_Mutation_p.P709L|HDAC9_uc003suj.2_Missense_Mutation_p.P665L|HDAC9_uc003sua.1_Missense_Mutation_p.P684L	NM_058176	NP_478056	Q9UKV0	HDAC9_HUMAN	histone deacetylase 9 isoform 1	706	Histone deacetylase.				B cell differentiation|cellular response to insulin stimulus|heart development|histone H3 deacetylation|histone H4 deacetylation|inflammatory response|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|peptidyl-lysine deacetylation|positive regulation of cell migration involved in sprouting angiogenesis|regulation of skeletal muscle fiber development|transcription, DNA-dependent	cytoplasm|histone deacetylase complex|histone methyltransferase complex|transcription factor complex	histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|histone deacetylase binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|protein binding|protein kinase C binding|repressing transcription factor binding|transcription corepressor activity			lung(2)|central_nervous_system(2)|kidney(1)	5	all_lung(11;0.187)				Valproic Acid(DB00313)	GGCACCAACCCCCTGGACGGA	0.502													5	5					0	0	0.000602214	0	0
RPL23P8	222901	broad.mit.edu	37	7	20867103	20867103	+	RNA	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr7:20867103C>T	uc011jyj.1	+	1		c.187C>T				NR_026673				Homo sapiens ribosomal protein L23 pseudogene 8 (RPL23P8), non-coding RNA.												0						ACAGACTTCCCGCTGCTGGTG	0.493													8	25					0	0	0.000274275	0	0
TAX1BP1	8887	broad.mit.edu	37	7	27797690	27797691	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr7:27797690_27797691GG>TT	uc003szl.2	+	3	361_362	c.203_204GG>TT	c.(202-204)TGG>TTT	p.W68F	TAX1BP1_uc011jzo.1_Missense_Mutation_p.W68F|TAX1BP1_uc003szk.2_Missense_Mutation_p.W68F|TAX1BP1_uc011jzp.1_5'UTR	NM_006024	NP_006015	Q86VP1	TAXB1_HUMAN	Tax1 (human T-cell leukemia virus type I)	68					anti-apoptosis|apoptosis|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production	cytosol	identical protein binding|kinase binding|zinc ion binding			breast(1)	1			GBM - Glioblastoma multiforme(3;0.0823)			ACGTTTTTATGGTCCCCTATGC	0.371													19	785					0	0	6.4e-05	0	0
TAX1BP1	8887	broad.mit.edu	37	7	27797695	27797696	+	Missense_Mutation	DNP	CC	AA	AA	rs11540484		TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr7:27797695_27797696CC>AA	uc003szl.2	+	3	366_367	c.208_209CC>AA	c.(208-210)CCT>AAT	p.P70N	TAX1BP1_uc011jzo.1_Missense_Mutation_p.P70N|TAX1BP1_uc003szk.2_Missense_Mutation_p.P70N|TAX1BP1_uc011jzp.1_5'UTR	NM_006024	NP_006015	Q86VP1	TAXB1_HUMAN	Tax1 (human T-cell leukemia virus type I)	70					anti-apoptosis|apoptosis|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production	cytosol	identical protein binding|kinase binding|zinc ion binding			breast(1)	1			GBM - Glioblastoma multiforme(3;0.0823)			TTTATGGTCCCCTATGCCTGAA	0.371													22	770					0	0	6.4e-05	0	0
TAX1BP1	8887	broad.mit.edu	37	7	27805505	27805506	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr7:27805505_27805506CC>AA	uc003szl.2	+	4	476_477	c.318_319CC>AA	c.(316-321)ACCCAT>ACAAAT	p.H107N	TAX1BP1_uc011jzo.1_Missense_Mutation_p.H107N|TAX1BP1_uc003szk.2_Missense_Mutation_p.H107N|TAX1BP1_uc011jzp.1_Intron	NM_006024	NP_006015	Q86VP1	TAXB1_HUMAN	Tax1 (human T-cell leukemia virus type I)	107					anti-apoptosis|apoptosis|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production	cytosol	identical protein binding|kinase binding|zinc ion binding			breast(1)	1			GBM - Glioblastoma multiforme(3;0.0823)			GTTACGTTACCCATAAGGGTGA	0.351													22	763					0	0	6.4e-05	0	0
JAZF1	221895	broad.mit.edu	37	7	27872513	27872514	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr7:27872513_27872514CC>AA	uc003szn.2	-	5	878_879	c.637_638GG>TT	c.(637-639)GGG>TTG	p.G213L	JAZF1_uc003szm.2_Missense_Mutation_p.G149L	NM_175061	NP_778231	Q86VZ6	JAZF1_HUMAN	JAZF zinc finger 1	213	C2H2-type 3; degenerate.				negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	transcriptional repressor complex	nucleic acid binding|transcription corepressor activity|zinc ion binding		JAZF1/SUZ12(131)	soft_tissue(98)|endometrium(33)	131						GTAACTCTTCCCACAGCGACAC	0.47			T	SUZ12	endometrial stromal tumours								13	430					0	0	6.4e-05	0	0
CREB5	9586	broad.mit.edu	37	7	28534569	28534569	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr7:28534569G>A	uc003szq.2	+	3	511	c.121G>A	c.(121-123)GAA>AAA	p.E41K	CREB5_uc003szo.2_Missense_Mutation_p.E8K|CREB5_uc003szr.2_Missense_Mutation_p.E34K	NM_182898	NP_878901	Q02930	CREB5_HUMAN	cAMP responsive element binding protein 5	41					positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter		protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(2)	2						GCACAAACATGAAATGACTTT	0.413													153	276					0	0	0.000781405	0	0
CRHR2	1395	broad.mit.edu	37	7	30695256	30695256	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr7:30695256C>T	uc003tbn.2	-	10	1237	c.993G>A	c.(991-993)GGG>GGA	p.G331G	CRHR2_uc010kvw.1_Silent_p.G331G|CRHR2_uc010kvx.1_Silent_p.G330G|CRHR2_uc010kvy.1_Silent_p.G167G|CRHR2_uc003tbo.2_Silent_p.G317G|CRHR2_uc003tbp.2_Silent_p.G358G	NM_001883	NP_001874	Q13324	CRFR2_HUMAN	corticotropin releasing hormone receptor 2	331	Extracellular (Potential).				G-protein signaling, coupled to cAMP nucleotide second messenger	integral to plasma membrane	corticotrophin-releasing factor receptor activity|protein binding			lung(2)|ovary(1)|skin(1)	4						GGTCGTCCTCCCCGGGATTGA	0.592													17	122					0	0	0.00074312	0	0
INMT	11185	broad.mit.edu	37	7	30795310	30795310	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr7:30795310C>T	uc003tbs.1	+	3	651	c.635C>T	c.(634-636)TCC>TTC	p.S212F	FAM188B_uc010kwe.2_Intron|INMT_uc010kwc.1_RNA|INMT_uc010kwd.1_Missense_Mutation_p.S211F	NM_006774	NP_006765	O95050	INMT_HUMAN	indolethylamine N-methyltransferase	212						cytoplasm	amine N-methyltransferase activity				0						CGTGAATTTTCCTGCGTGGCC	0.597													24	25					0	0	0.000295444	0	0
HECW1	23072	broad.mit.edu	37	7	43548571	43548571	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr7:43548571G>A	uc003tid.1	+	24	4475	c.3870G>A	c.(3868-3870)CTG>CTA	p.L1290L	HECW1_uc011kbi.1_Silent_p.L1256L|uc003tig.1_RNA	NM_015052	NP_055867	Q76N89	HECW1_HUMAN	NEDD4-like ubiquitin-protein ligase 1	1290	HECT.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	ubiquitin-protein ligase activity			ovary(8)|lung(6)|breast(4)|skin(4)|pancreas(1)	23						TTTGCAGCCTGGACTACAGTG	0.527													32	79					0	0	0.000692331	0	0
GCK	2645	broad.mit.edu	37	7	44189372	44189372	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr7:44189372G>A	uc003tkl.2	-	6	1136	c.666C>T	c.(664-666)GTC>GTT	p.V222V	GCK_uc003tkj.1_Silent_p.V221V|GCK_uc003tkk.1_Silent_p.V223V	NM_000162	NP_000153	P35557	HXK4_HUMAN	glucokinase isoform 1	222					cellular response to insulin stimulus|cellular response to leptin stimulus|detection of glucose|endocrine pancreas development|glucose homeostasis|glucose transport|glycolysis|negative regulation of gluconeogenesis|positive regulation of glycogen biosynthetic process|positive regulation of insulin secretion|regulation of glucose transport|regulation of glycolysis|transmembrane transport	cytosol|nucleoplasm	ATP binding|glucokinase activity|glucose binding|protein binding			skin(3)|lung(1)	4						CGATCATGCCGACCTCGCACT	0.577													118	204					0	0	0.000781405	0	0
ADCY1	107	broad.mit.edu	37	7	45725619	45725619	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr7:45725619C>T	uc003tne.3	+	13	2150	c.2132C>T	c.(2131-2133)TCG>TTG	p.S711L		NM_021116	NP_066939	Q08828	ADCY1_HUMAN	adenylate cyclase 1	711					activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|calmodulin binding|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6					Adenosine(DB00640)|Adenosine monophosphate(DB00131)|Adenosine triphosphate(DB00171)	GTGGTCCTTTCGTCTGGGGGC	0.657													16	16					0	0	0.000422831	0	0
PKD1L1	168507	broad.mit.edu	37	7	47944918	47944918	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr7:47944918G>A	uc003tny.1	-	11	1527	c.1527C>T	c.(1525-1527)GTC>GTT	p.V509V		NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	509	Extracellular (Potential).|PKD 1.				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						TGTAGACAGAGACGGCTGTGG	0.443													56	47					0	0	0.000781405	0	0
WBSCR17	64409	broad.mit.edu	37	7	71175784	71175784	+	Silent	SNP	T	C	C			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr7:71175784T>C	uc003tvy.2	+	10	1539	c.1539T>C	c.(1537-1539)GGT>GGC	p.G513G	WBSCR17_uc003tvz.2_Silent_p.G212G	NM_022479	NP_071924	Q6IS24	GLTL3_HUMAN	UDP-GalNAc:polypeptide	513	Ricin B-type lectin.|Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			skin(3)|upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)|central_nervous_system(1)	7		all_cancers(73;0.2)|Lung NSC(55;0.094)|all_lung(88;0.125)				TGCACTTGGGTGCCCTGGGGA	0.622													20	63					0	0	0.000586117	0	0
BAZ1B	9031	broad.mit.edu	37	7	72877380	72877381	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr7:72877380_72877381CC>AA	uc003tyc.2	-	12	3465_3466	c.3120_3121GG>TT	c.(3118-3123)TTGGGT>TTTTGT	p.1040_1041LG>FC		NM_032408	NP_115784	Q9UIG0	BAZ1B_HUMAN	bromodomain adjacent to zinc finger domain, 1B	1040_1041					ATP-dependent chromatin remodeling|chromatin-mediated maintenance of transcription|DNA replication-dependent nucleosome disassembly|double-strand break repair|heart morphogenesis|transcription, DNA-dependent	WINAC complex	ATP binding|chromatin binding|histone acetyl-lysine binding|histone kinase activity|non-membrane spanning protein tyrosine kinase activity|protein complex scaffold|vitamin D receptor activator activity|vitamin D receptor binding|zinc ion binding			ovary(4)|upper_aerodigestive_tract(1)|breast(1)|skin(1)	7		Lung NSC(55;0.0659)|all_lung(88;0.152)				GATTTTAGACCCAAATTTGGCT	0.391													11	380					0	0	6.4e-05	0	0
MAGI2	9863	broad.mit.edu	37	7	77807405	77807405	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr7:77807405C>T	uc003ugx.2	-	14	2580	c.2326G>A	c.(2326-2328)GAA>AAA	p.E776K	MAGI2_uc003ugy.2_Missense_Mutation_p.E762K|MAGI2_uc010ldx.1_Missense_Mutation_p.E369K	NM_012301	NP_036433	Q86UL8	MAGI2_HUMAN	membrane associated guanylate kinase, WW and PDZ	776						cell junction|synapse|synaptosome	phosphatase binding			ovary(5)|lung(4)|breast(1)|skin(1)	11		all_cancers(73;0.0064)|all_epithelial(88;0.087)|all_neural(109;0.0936)|Medulloblastoma(109;0.166)|Melanoma(862;0.236)				ACATCCAATTCCTTATAATCT	0.438													72	36					0	0	0.000781405	0	0
PCLO	27445	broad.mit.edu	37	7	82763754	82763754	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr7:82763754C>T	uc003uhx.2	-	3	3401	c.3112G>A	c.(3112-3114)GCT>ACT	p.A1038T	PCLO_uc003uhv.2_Missense_Mutation_p.A1038T	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	984					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TGAGGCTCAGCTGTTAAAGAT	0.413													18	30					0	0	0.00074312	0	0
PCLO	27445	broad.mit.edu	37	7	82763956	82763956	+	Silent	SNP	A	C	C			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr7:82763956A>C	uc003uhx.2	-	3	3199	c.2910T>G	c.(2908-2910)CCT>CCG	p.P970P	PCLO_uc003uhv.2_Silent_p.P970P	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	916	Pro-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GTGGCTGTGAAGGGGCAGGGG	0.512													4	34					0	0	0.00024832	0	0
ZNF804B	219578	broad.mit.edu	37	7	88965207	88965207	+	Missense_Mutation	SNP	G	A	A	rs141578416		TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr7:88965207G>A	uc011khi.1	+	4	3449	c.2911G>A	c.(2911-2913)GGC>AGC	p.G971S		NM_181646	NP_857597	A4D1E1	Z804B_HUMAN	zinc finger protein 804B	971						intracellular	zinc ion binding			ovary(5)|skin(3)|pancreas(2)|upper_aerodigestive_tract(1)	11	all_hematologic(106;0.125)|Lung NSC(181;0.15)|all_lung(186;0.151)		STAD - Stomach adenocarcinoma(171;0.0513)			TGCACCATCAGGCTGTAACAG	0.403										HNSCC(36;0.09)			37	46					0	0	0.000509022	0	0
SAMD9	54809	broad.mit.edu	37	7	92731165	92731165	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr7:92731165G>A	uc003umf.2	-	3	4502	c.4246C>T	c.(4246-4248)CGA>TGA	p.R1416*	SAMD9_uc003umg.2_Nonsense_Mutation_p.R1416*	NM_017654	NP_060124	Q5K651	SAMD9_HUMAN	sterile alpha motif domain containing 9	1416						cytoplasm				ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7	all_cancers(62;5.71e-11)|all_epithelial(64;3.25e-10)|Breast(17;0.000675)|Lung NSC(181;0.0969)|all_lung(186;0.125)		STAD - Stomach adenocarcinoma(171;0.000302)			AAGACTTCTCGAAGCTGATCT	0.373													17	175					0	0	0.000132079	0	0
SAMD9	54809	broad.mit.edu	37	7	92735364	92735364	+	Missense_Mutation	SNP	T	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr7:92735364T>A	uc003umf.2	-	3	303	c.47A>T	c.(46-48)AAA>ATA	p.K16I	SAMD9_uc003umg.2_Missense_Mutation_p.K16I	NM_017654	NP_060124	Q5K651	SAMD9_HUMAN	sterile alpha motif domain containing 9	16	SAM.					cytoplasm				ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7	all_cancers(62;5.71e-11)|all_epithelial(64;3.25e-10)|Breast(17;0.000675)|Lung NSC(181;0.0969)|all_lung(186;0.125)		STAD - Stomach adenocarcinoma(171;0.000302)			TACATCCTCTTTTGTCCAATC	0.308													38	145					0	0	0.000589545	0	0
COL1A2	1278	broad.mit.edu	37	7	94038674	94038674	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr7:94038674C>T	uc003ung.1	+	17	1304	c.833C>T	c.(832-834)CCC>CTC	p.P278L	COL1A2_uc011kib.1_Intron	NM_000089	NP_000080	P08123	CO1A2_HUMAN	alpha 2 type I collagen precursor	278					axon guidance|blood vessel development|collagen fibril organization|leukocyte migration|odontogenesis|platelet activation|regulation of blood pressure|Rho protein signal transduction|skeletal system development|skin morphogenesis|transforming growth factor beta receptor signaling pathway	collagen type I|extracellular space|plasma membrane	extracellular matrix structural constituent|identical protein binding|platelet-derived growth factor binding|protein binding, bridging		COL1A2/PLAG1(3)	soft_tissue(3)|central_nervous_system(3)|ovary(2)|skin(1)	9	all_cancers(62;2.46e-09)|all_epithelial(64;2.7e-08)		STAD - Stomach adenocarcinoma(171;0.0031)		Collagenase(DB00048)	CCTGCTGGTCCCGCCGGTCCC	0.468										HNSCC(75;0.22)			69	65					0	0	0.000781405	0	0
ASNS	440	broad.mit.edu	37	7	97487649	97487649	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr7:97487649G>A	uc003uot.3	-	7	1350	c.844C>T	c.(844-846)CCT>TCT	p.P282S	ASNS_uc011kin.1_Missense_Mutation_p.P199S|ASNS_uc003uou.3_Missense_Mutation_p.P282S|ASNS_uc003uov.3_Missense_Mutation_p.P282S|ASNS_uc011kio.1_Missense_Mutation_p.P261S|ASNS_uc003uow.3_Missense_Mutation_p.P261S|ASNS_uc003uox.3_Missense_Mutation_p.P199S	NM_133436	NP_597680	P08243	ASNS_HUMAN	asparagine synthetase	282	Asparagine synthetase.				cellular response to glucose starvation|glutamine metabolic process|negative regulation of apoptosis|positive regulation of mitotic cell cycle	cytosol|soluble fraction	asparagine synthase (glutamine-hydrolyzing) activity|ATP binding			ovary(1)	1	all_cancers(62;6.64e-09)|all_epithelial(64;1.58e-09)|Esophageal squamous(72;0.00448)|Lung NSC(181;0.0342)|all_lung(186;0.0369)				Adenosine triphosphate(DB00171)|L-Asparagine(DB00174)|L-Aspartic Acid(DB00128)|L-Glutamic Acid(DB00142)|L-Glutamine(DB00130)	GTCTGGAGAGGATACTGTACT	0.493													10	40					0	0	0.000673444	0	0
MUC17	140453	broad.mit.edu	37	7	100681346	100681346	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr7:100681346G>A	uc003uxp.1	+	3	6702	c.6649G>A	c.(6649-6651)GAA>AAA	p.E2217K	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	2217	Extracellular (Potential).|35.|59 X approximate tandem repeats.|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					AACTCCTAGTGAAGGAAGCAC	0.507													48	226					0	0	0.000781405	0	0
PLOD3	8985	broad.mit.edu	37	7	100855624	100855624	+	Missense_Mutation	SNP	G	A	A	rs150001477	byFrequency	TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr7:100855624G>A	uc003uyd.2	-	10	1493	c.1037C>T	c.(1036-1038)TCC>TTC	p.S346F	PLOD3_uc010lhs.2_5'UTR	NM_001084	NP_001075	O60568	PLOD3_HUMAN	procollagen-lysine, 2-oxoglutarate 5-dioxygenase	346					protein modification process	rough endoplasmic reticulum membrane	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-lysine 5-dioxygenase activity|protein binding			ovary(1)|skin(1)	2	Lung NSC(181;0.168)|all_lung(186;0.215)				Succinic acid(DB00139)|Vitamin C(DB00126)	CTGCGGCCAGGAGTCAGCGAT	0.662													13	67					0	0	0.000219431	0	0
DPY19L2P2	349152	broad.mit.edu	37	7	102883456	102883456	+	Missense_Mutation	SNP	A	C	C			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr7:102883456A>C	uc003vbh.3	-	10	2462	c.271T>G	c.(271-273)TTC>GTC	p.F91V	DPY19L2P2_uc003vbg.3_RNA|DPY19L2P2_uc010lit.2_RNA	NR_003561				RecName: Full=Protein dpy-19 homolog 2-like 2; AltName: Full=Dpy-19-like protein 2 pseudogene 2;												0						TTGAAAAAGAAGCACAGTACT	0.308													5	40					0	0	8.12818e-05	0	0
LAMB4	22798	broad.mit.edu	37	7	107746344	107746344	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr7:107746344C>T	uc010ljo.1	-	8	872	c.788G>A	c.(787-789)GGA>GAA	p.G263E	LAMB4_uc003vey.2_Missense_Mutation_p.G263E	NM_007356	NP_031382	A4D0S4	LAMB4_HUMAN	laminin, beta 4 precursor	263	Laminin N-terminal.				cell adhesion	basement membrane				ovary(4)|breast(2)|large_intestine(1)|skin(1)	8						AAAGCAGCTTCCCCGAACAAT	0.468													9	55					0	0	0.000442599	0	0
FLNC	2318	broad.mit.edu	37	7	128496603	128496603	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr7:128496603C>T	uc003vnz.3	+	44	7492	c.7283C>T	c.(7282-7284)TCC>TTC	p.S2428F	FLNC_uc003voa.3_Missense_Mutation_p.S2395F	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	2428	Filamin 22.|Interaction with INPPL1.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						CAGCCAGCGTCCTTTGCCGTG	0.652													6	47					0	0	0.000274275	0	0
PLXNA4	91584	broad.mit.edu	37	7	131895824	131895824	+	Missense_Mutation	SNP	T	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr7:131895824T>A	uc003vra.3	-	10	2405	c.2176A>T	c.(2176-2178)AAC>TAC	p.N726Y		NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	726	Extracellular (Potential).					integral to membrane|intracellular|plasma membrane				ovary(1)	1						TGGGGGAGGTTCTTGGCCTTC	0.637													9	6					0	0	0.000274275	0	0
LRGUK	136332	broad.mit.edu	37	7	133943049	133943049	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr7:133943049C>T	uc003vrm.1	+	19	2255	c.2239C>T	c.(2239-2241)CGG>TGG	p.R747W		NM_144648	NP_653249	Q96M69	LRGUK_HUMAN	leucine-rich repeats and guanylate kinase domain	747							ATP binding|kinase activity			lung(2)|skin(2)|kidney(1)	5						TTCATTGTTTCGGTTCTGTCC	0.448													42	64					0	0	0.000781405	0	0
DGKI	9162	broad.mit.edu	37	7	137257540	137257540	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr7:137257540G>A	uc003vtt.2	-	18	1807	c.1806C>T	c.(1804-1806)TTC>TTT	p.F602F	DGKI_uc003vtu.2_Silent_p.F302F	NM_004717	NP_004708	O75912	DGKI_HUMAN	diacylglycerol kinase, iota	602					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	nucleus|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(1)|kidney(1)|skin(1)	3						CTATACACTGGAACTTCAGTT	0.373													74	72					0	0	0.000781405	0	0
KIAA1549	57670	broad.mit.edu	37	7	138596002	138596002	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr7:138596002G>A	uc011kql.1	-	4	3084	c.3035C>T	c.(3034-3036)TCC>TTC	p.S1012F	KIAA1549_uc003vuk.3_Missense_Mutation_p.S962F|KIAA1549_uc011kqj.1_Missense_Mutation_p.S1012F	NM_020910	NP_065961	Q9HCM3	K1549_HUMAN	hypothetical protein LOC57670 isoform 1	1012	Helical; (Potential).					integral to membrane			KIAA1549/BRAF(229)	central_nervous_system(229)|pancreas(1)	230						ATTTATGACGGATATTGCCGT	0.398			O	BRAF	pilocytic astrocytoma								21	15					0	0	0.000375601	0	0
TAS2R5	54429	broad.mit.edu	37	7	141490228	141490228	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr7:141490228G>A	uc003vwr.1	+	1	212	c.67G>A	c.(67-69)GGA>AGA	p.G23R		NM_018980	NP_061853	Q9NYW4	TA2R5_HUMAN	taste receptor T2R5	23	Cytoplasmic (Potential).				chemosensory behavior|sensory perception of taste		taste receptor activity				0	Melanoma(164;0.0171)					CGGTTTAATTGGAAATGGAAG	0.517													45	40					0	0	0.000781405	0	0
TRYX3	136541	broad.mit.edu	37	7	141955469	141955469	+	Missense_Mutation	SNP	T	C	C			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr7:141955469T>C	uc003vxb.2	-	2	385	c.65A>G	c.(64-66)TAC>TGC	p.Y22C	TRYX3_uc003vxc.3_Missense_Mutation_p.Y22C	NM_001001317	NP_001001317	Q8IYP2	PRS58_HUMAN	trypsin X3 precursor	22	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity				0	Melanoma(164;0.0272)					GCTGACTGTGTAATCTGGATT	0.448													4	20					0	0	0.00024832	0	0
PRSS1	5644	broad.mit.edu	37	7	142458473	142458473	+	Silent	SNP	C	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr7:142458473C>A	uc003wak.2	+	2	125	c.108C>A	c.(106-108)CCC>CCA	p.P36P	uc011krr.1_Intron|uc003vzp.2_Intron|uc011ksh.1_Intron|uc011ksi.1_Intron|uc003vzw.1_Intron|uc010loj.1_Intron|uc003wad.2_Intron|uc003wag.1_Intron|TRY6_uc011ksn.1_Intron|PRSS1_uc011ksm.1_Intron|PRSS1_uc003wam.2_5'Flank	NM_002769	NP_002760	P07477	TRY1_HUMAN	protease, serine, 1 preproprotein	36	Peptidase S1.				digestion|proteolysis	extracellular space	metal ion binding|protein binding|serine-type endopeptidase activity			large_intestine(1)|central_nervous_system(1)	2	Melanoma(164;0.047)	all_cancers(3;2.14e-49)|Acute lymphoblastic leukemia(3;7.3e-185)|all_hematologic(3;1.1e-165)	all cancers(2;0.000126)|Colorectal(2;0.000157)|Epithelial(2;0.000191)|COAD - Colon adenocarcinoma(2;0.00189)			ATTCTGTCCCCTACCAGGTGT	0.532									Hereditary_Pancreatitis				8	120					0.000157383	0.00195573	0.000157383	1	0
TRPV6	55503	broad.mit.edu	37	7	142569526	142569526	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr7:142569526C>T	uc003wbx.1	-	15	2328	c.2112G>A	c.(2110-2112)AGG>AGA	p.R704R	TRPV6_uc003wbw.1_Silent_p.R490R|TRPV6_uc010lou.1_Silent_p.R575R	NM_018646	NP_061116	Q9H1D0	TRPV6_HUMAN	transient receptor potential cation channel,	704	Interaction with calmodulin.|Cytoplasmic (Potential).				regulation of calcium ion-dependent exocytosis	integral to plasma membrane	calcium channel activity|calmodulin binding			ovary(2)	2	Melanoma(164;0.059)					GCAGGTCTCTCCTCAGGGTCC	0.577													14	80					0	0	0.000219431	0	0
ZYX	7791	broad.mit.edu	37	7	143080209	143080209	+	Missense_Mutation	SNP	T	G	G			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr7:143080209T>G	uc003wcw.2	+	5	972	c.817T>G	c.(817-819)TTT>GTT	p.F273V	ZYX_uc011ktd.1_Missense_Mutation_p.F116V|ZYX_uc003wcx.2_Missense_Mutation_p.F273V|ZYX_uc011kte.1_Missense_Mutation_p.F242V|ZYX_uc011ktf.1_Missense_Mutation_p.F116V	NM_001010972	NP_001010972	Q15942	ZYX_HUMAN	zyxin	273					cell adhesion|cell-cell signaling|interspecies interaction between organisms|signal transduction	cell-cell adherens junction|cytoplasm|focal adhesion|integral to plasma membrane|nucleus|stress fiber	protein binding|zinc ion binding				0	Melanoma(164;0.205)					GACTCCTAAGTTTACTCCTGT	0.522													12	202					0	0	6.40141e-05	0	0
TAS2R60	338398	broad.mit.edu	37	7	143141025	143141025	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr7:143141025C>T	uc011ktg.1	+	1	480	c.480C>T	c.(478-480)TTC>TTT	p.F160F	uc003wda.2_Intron	NM_177437	NP_803186	P59551	T2R60_HUMAN	taste receptor, type 2, member 60	160	Extracellular (Potential).				sensory perception of bitter taste	integral to membrane	G-protein coupled receptor activity			skin(6)	6	Melanoma(164;0.172)					TTCTATTTTTCATAGGCAACC	0.453													102	104					0	0	0.000781405	0	0
TAS2R60	338398	broad.mit.edu	37	7	143141106	143141106	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr7:143141106C>T	uc011ktg.1	+	1	561	c.561C>T	c.(559-561)AGC>AGT	p.S187S	uc003wda.2_Intron	NM_177437	NP_803186	P59551	T2R60_HUMAN	taste receptor, type 2, member 60	187	Helical; Name=5; (Potential).				sensory perception of bitter taste	integral to membrane	G-protein coupled receptor activity			skin(6)	6	Melanoma(164;0.172)					GCATACGGAGCTACTGTGAGA	0.398													17	182					0	0	0.00074312	0	0
ZNF425	155054	broad.mit.edu	37	7	148802118	148802118	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr7:148802118G>A	uc003wfj.2	-	4	918	c.845C>T	c.(844-846)ACC>ATC	p.T282I		NM_001001661	NP_001001661	Q6IV72	ZN425_HUMAN	zinc finger protein 425	282	C2H2-type 3.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			breast(2)|ovary(1)	3	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00463)			GTACCGGAAGGTCTTGTCGCA	0.637													14	29					0	0	0.000308642	0	0
C7orf29	113763	broad.mit.edu	37	7	150027541	150027541	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr7:150027541G>A	uc003wgy.2	+	1	604	c.48G>A	c.(46-48)GTG>GTA	p.V16V	LRRC61_uc003wgv.2_Intron|LRRC61_uc003wgx.2_Intron|LRRC61_uc003wgw.2_Intron	NM_138434	NP_612443	Q96FA7	CG029_HUMAN	hypothetical protein LOC113763	16										ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.011)			TGAGCCAGGTGCTGCCCCAGC	0.642													8	83					0	0	0.000673444	0	0
GIMAP7	168537	broad.mit.edu	37	7	150217799	150217799	+	Missense_Mutation	SNP	A	C	C			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr7:150217799A>C	uc003whk.2	+	2	867	c.737A>C	c.(736-738)AAG>ACG	p.K246T		NM_153236	NP_694968	Q8NHV1	GIMA7_HUMAN	GTPase, IMAP family member 7	246							GTP binding			pancreas(1)|skin(1)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0218)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GAGGAAGAAAAGGAGAAAGaa	0.254													9	35					0	0	0.000274275	0	0
GIMAP4	55303	broad.mit.edu	37	7	150269501	150269501	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr7:150269501C>T	uc003whl.2	+	3	425	c.343C>T	c.(343-345)CAT>TAT	p.H115Y	GIMAP4_uc011kuu.1_Intron|GIMAP4_uc011kuv.1_Missense_Mutation_p.H129Y	NM_018326	NP_060796	Q9NUV9	GIMA4_HUMAN	GTPase, IMAP family member 4	115							GTP binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.0179)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CCCAGGGCCTCATGCTCTGCT	0.507													9	46					0	0	0.000274275	0	0
SLC4A2	6522	broad.mit.edu	37	7	150764051	150764051	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr7:150764051C>T	uc003wit.3	+	7	1193	c.937C>T	c.(937-939)CGA>TGA	p.R313*	SLC4A2_uc011kve.1_Nonsense_Mutation_p.R304*|SLC4A2_uc003wiu.3_Nonsense_Mutation_p.R299*	NM_003040	NP_003031	P04920	B3A2_HUMAN	solute carrier family 4, anion exchanger, member	313	Cytoplasmic (Potential).|Pro-rich.				bicarbonate transport	integral to membrane|membrane fraction	inorganic anion exchanger activity				0			OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		ACCTCGGGCCCGACCCCGGGC	0.652													38	35					0	0	0.000781405	0	0
ASB10	136371	broad.mit.edu	37	7	150878530	150878530	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr7:150878530G>A	uc003wjm.1	-	3	861	c.735C>T	c.(733-735)CTC>CTT	p.L245L	ASB10_uc003wjl.1_Silent_p.L245L|ASB10_uc003wjn.1_Silent_p.L185L	NM_001142459	NP_001135931	Q8WXI3	ASB10_HUMAN	ankyrin repeat and SOCS box-containing 10	200	ANK 3.				intracellular signal transduction						0			OV - Ovarian serous cystadenocarcinoma(82;0.00448)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CAAACCTGAGGAGCAGCTCCG	0.632													4	19					0	0	3.59834e-05	0	0
UBE3C	9690	broad.mit.edu	37	7	156974866	156974866	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr7:156974866C>T	uc010lqs.2	+	8	1147	c.835C>T	c.(835-837)CAT>TAT	p.H279Y	UBE3C_uc003wnf.2_Missense_Mutation_p.H236Y|UBE3C_uc003wng.2_Missense_Mutation_p.H279Y	NM_014671	NP_055486	Q15386	UBE3C_HUMAN	ubiquitin protein ligase E3C	279					protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus|proteasome complex	protein binding|ubiquitin-protein ligase activity			ovary(2)|lung(2)|large_intestine(1)	5		all_hematologic(28;0.0185)|all_epithelial(9;0.0664)	OV - Ovarian serous cystadenocarcinoma(82;0.00448)	UCEC - Uterine corpus endometrioid carcinoma (81;0.19)		TCAGATTTTTCATTTCATCAT	0.398													39	109					0	0	0.000781405	0	0
DLGAP2	9228	broad.mit.edu	37	8	1497688	1497688	+	Silent	SNP	T	C	C			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr8:1497688T>C	uc003wpl.2	+	2	926	c.829T>C	c.(829-831)TTG>CTG	p.L277L	DLGAP2_uc003wpm.2_Silent_p.L277L	NM_004745	NP_004736	Q9P1A6	DLGP2_HUMAN	discs large-associated protein 2	356					neuron-neuron synaptic transmission	cell junction|neurofilament|postsynaptic density|postsynaptic membrane	protein binding				0		Ovarian(12;0.0271)|Hepatocellular(245;0.0838)|Colorectal(14;0.0846)		BRCA - Breast invasive adenocarcinoma(11;0.000169)|READ - Rectum adenocarcinoma(644;0.171)		CTGTGAGGGGTTGGCGCTGAC	0.652													15	20					0	0	0.00074312	0	0
CSMD1	64478	broad.mit.edu	37	8	2815330	2815330	+	Splice_Site	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr8:2815330C>T	uc011kwk.1	-	63	10096	c.9706_splice	c.e63-1	p.V3236_splice	CSMD1_uc011kwj.1_Splice_Site_p.V2565_splice|CSMD1_uc010lrg.2_Splice_Site_p.V1127_splice	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor							integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		TGCTTCCAACCTAGAGAGGAA	0.458													3	5					0	0	6.4e-05	0	0
CSMD1	64478	broad.mit.edu	37	8	2944738	2944738	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr8:2944738C>T	uc011kwk.1	-	49	7748	c.7358G>A	c.(7357-7359)GGA>GAA	p.G2453E	CSMD1_uc011kwj.1_Missense_Mutation_p.G1782E|CSMD1_uc010lrg.2_Missense_Mutation_p.G521E	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	2453	Sushi 14.|Extracellular (Potential).					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		CACTTTGCTTCCAACCGCTCC	0.512													8	74					0	0	0.000157383	0	0
SGK223	157285	broad.mit.edu	37	8	8185578	8185578	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr8:8185578C>T	uc003wsh.3	-	4	2714	c.2714G>A	c.(2713-2715)AGC>AAC	p.S905N		NM_001080826	NP_001074295	Q86YV5	SG223_HUMAN	pragmin	905							ATP binding|non-membrane spanning protein tyrosine kinase activity				0						GAGGCCAGGGCTCCCGCAGCC	0.657													13	50					0	0	0.00010058	0	0
RP1L1	94137	broad.mit.edu	37	8	10470537	10470537	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr8:10470537G>A	uc003wtc.2	-	4	1300	c.1071C>T	c.(1069-1071)CCC>CCT	p.P357P		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	357					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		CCCCCAGAACGGGGTCTTCCC	0.677													16	41					0	0	0.000422831	0	0
RP1L1	94137	broad.mit.edu	37	8	10470595	10470595	+	Missense_Mutation	SNP	A	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr8:10470595A>T	uc003wtc.2	-	4	1242	c.1013T>A	c.(1012-1014)CTA>CAA	p.L338Q		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	338					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		CCGGGACCATAGGAGCGTGTC	0.647													33	44					0	0	0.000191422	0	0
SOX7	83595	broad.mit.edu	37	8	10583632	10583632	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr8:10583632G>A	uc003wtf.2	-	2	862	c.783C>T	c.(781-783)GCC>GCT	p.A261A	SOX7_uc011kwz.1_Silent_p.A313A	NM_031439	NP_113627	Q9BT81	SOX7_HUMAN	SRY-box 7	261					endoderm formation|negative regulation of cell proliferation|negative regulation of transcription, DNA-dependent|positive regulation of caspase activity|regulation of canonical Wnt receptor signaling pathway	cytoplasm|nucleus	transcription regulatory region DNA binding			breast(1)	1				COAD - Colon adenocarcinoma(149;0.0732)		ACTGGCCAAGGGCCAGGGAGC	0.682													25	43					0	0	0.000184323	0	0
FAM167A	83648	broad.mit.edu	37	8	11301725	11301725	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr8:11301725C>T	uc010lry.1	-	2	816	c.196G>A	c.(196-198)GAG>AAG	p.E66K	FAM167A_uc003wtw.2_Missense_Mutation_p.E66K	NM_053279	NP_444509	Q96KS9	F167A_HUMAN	hypothetical protein LOC83648	66											0						GCCTGTGGCTCCGCAGCCGGC	0.697													5	38					0	0	0.000602214	0	0
MTMR7	9108	broad.mit.edu	37	8	17157596	17157596	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr8:17157596C>T	uc003wxm.2	-	14	1997	c.1758G>A	c.(1756-1758)ATG>ATA	p.M586I	MTMR7_uc011kya.1_Missense_Mutation_p.M220I|MTMR7_uc011kyb.1_Missense_Mutation_p.M177I	NM_004686	NP_004677	Q9Y216	MTMR7_HUMAN	myotubularin related protein 7	586							protein tyrosine phosphatase activity			skin(1)	1				Colorectal(111;0.112)		GAAATGATTTCATATTCCCAC	0.468													43	69					0	0	0.000781405	0	0
CSGALNACT1	55790	broad.mit.edu	37	8	19276199	19276199	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr8:19276199G>A	uc011kyn.1	-	8	2259	c.1195C>T	c.(1195-1197)CAT>TAT	p.H399Y	CSGALNACT1_uc011kyo.1_Missense_Mutation_p.H399Y|CSGALNACT1_uc003wzg.2_RNA|CSGALNACT1_uc011kyp.1_Missense_Mutation_p.H398Y	NM_001130518	NP_001123990	Q8TDX6	CGAT1_HUMAN	chondroitin sulfate	399	Lumenal (Potential).				anatomical structure morphogenesis|cell proliferation|cell recognition|chondroitin sulfate biosynthetic process|chondroitin sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process|dermatan sulfate proteoglycan biosynthetic process|extracellular matrix organization|heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process|heparin biosynthetic process|nervous system development|UDP-glucuronate metabolic process|UDP-N-acetylgalactosamine metabolic process	Golgi cisterna membrane|integral to Golgi membrane|soluble fraction	glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity|glucuronosyltransferase activity|glucuronylgalactosylproteoglycan 4-beta-N-acetylgalactosaminyltransferase activity|metal ion binding|peptidoglycan glycosyltransferase activity			central_nervous_system(2)|ovary(1)	3				Colorectal(111;0.182)		ACTGCATCATGGTGGCCGTAT	0.453													17	28					0	0	0.000958276	0	0
TNFRSF10A	8797	broad.mit.edu	37	8	23059404	23059404	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr8:23059404C>T	uc003xda.2	-	4	611	c.546G>A	c.(544-546)ACG>ACA	p.T182T		NM_003844	NP_003835	O00220	TR10A_HUMAN	tumor necrosis factor receptor superfamily,	182	TNFR-Cys 2.|Extracellular (Potential).				activation of NF-kappaB-inducing kinase activity|cellular response to mechanical stimulus|induction of apoptosis via death domain receptors		caspase activator activity|death receptor activity|TRAIL binding|transcription factor binding			central_nervous_system(3)|ovary(2)|skin(1)	6		Prostate(55;0.0421)|Breast(100;0.14)		Colorectal(74;0.016)|COAD - Colon adenocarcinoma(73;0.0646)		TGTTCCTGGTCGTGGTGCAGG	0.512													15	41					0	0	0.000132079	0	0
C8orf80	389643	broad.mit.edu	37	8	27922130	27922130	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr8:27922130G>A	uc003xgm.3	-	7	973	c.830C>T	c.(829-831)CCC>CTC	p.P277L		NM_001010906	NP_001010906	Q68CJ6	SLIP_HUMAN	speckled-like pattern in the germinal center	277						nucleus	GTP binding|GTPase activity			ovary(1)|central_nervous_system(1)	2		Ovarian(32;0.0218)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0228)|KIRC - Kidney renal clear cell carcinoma(542;0.126)|Kidney(114;0.15)|Colorectal(74;0.181)		GTCGGATTTGGGAAGTGTCAC	0.557													16	33					0	0	0.000308642	0	0
UNC5D	137970	broad.mit.edu	37	8	35541129	35541129	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr8:35541129C>T	uc003xjr.1	+	5	963	c.635C>T	c.(634-636)GCT>GTT	p.A212V	UNC5D_uc003xjs.1_Missense_Mutation_p.A207V|UNC5D_uc003xjt.1_5'UTR	NM_080872	NP_543148	Q6UXZ4	UNC5D_HUMAN	unc-5 homolog D precursor	212	Extracellular (Potential).|Ig-like C2-type.				apoptosis|axon guidance	integral to membrane	receptor activity			upper_aerodigestive_tract(2)|ovary(2)|pancreas(1)|skin(1)	6				READ - Rectum adenocarcinoma(1;1.31e-05)|Colorectal(1;0.000723)		GACACCAGGGCTGACCATAAC	0.493													7	71					0	0	0.000274275	0	0
UNC5D	137970	broad.mit.edu	37	8	35606138	35606138	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr8:35606138C>T	uc003xjr.1	+	12	2188	c.1860C>T	c.(1858-1860)ATC>ATT	p.I620I	UNC5D_uc003xjs.1_Silent_p.I615I|UNC5D_uc003xju.1_Silent_p.I196I	NM_080872	NP_543148	Q6UXZ4	UNC5D_HUMAN	unc-5 homolog D precursor	620	ZU5.|Cytoplasmic (Potential).				apoptosis|axon guidance	integral to membrane	receptor activity			upper_aerodigestive_tract(2)|ovary(2)|pancreas(1)|skin(1)	6				READ - Rectum adenocarcinoma(1;1.31e-05)|Colorectal(1;0.000723)		CATTGACCATCCCGCACTGTG	0.498													14	111					0	0	0.000566183	0	0
SFRP1	6422	broad.mit.edu	37	8	41166145	41166145	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr8:41166145G>A	uc003xnt.2	-	1	836	c.534C>T	c.(532-534)TCC>TCT	p.S178S		NM_003012	NP_003003	Q8N474	SFRP1_HUMAN	secreted frizzled-related protein 1 precursor	178					brain development|canonical Wnt receptor signaling pathway|cellular response to BMP stimulus|cellular response to estradiol stimulus|cellular response to fibroblast growth factor stimulus|cellular response to heparin|cellular response to hypoxia|cellular response to interleukin-1|cellular response to prostaglandin E stimulus|cellular response to starvation|cellular response to transforming growth factor beta stimulus|cellular response to tumor necrosis factor|cellular response to vitamin D|DNA fragmentation involved in apoptotic nuclear change|dorsal/ventral axis specification|hemopoietic progenitor cell differentiation|hemopoietic stem cell differentiation|menstrual cycle phase|negative regulation of androgen receptor signaling pathway|negative regulation of B cell differentiation|negative regulation of bone remodeling|negative regulation of canonical Wnt receptor signaling pathway involved in controlling type B pancreatic cell proliferation|negative regulation of cell growth|negative regulation of cell migration|negative regulation of cysteine-type endopeptidase activity|negative regulation of epithelial cell proliferation|negative regulation of epithelial to mesenchymal transition|negative regulation of fibroblast apoptosis|negative regulation of fibroblast proliferation|negative regulation of insulin secretion|negative regulation of ossification|negative regulation of osteoblast proliferation|negative regulation of peptidyl-tyrosine phosphorylation|negative regulation of transcription, DNA-dependent|negative regulation of Wnt receptor signaling pathway involved in dorsal/ventral axis specification|osteoblast differentiation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell growth|positive regulation of epithelial cell proliferation|positive regulation of fat cell differentiation|positive regulation of fibroblast apoptosis|positive regulation of focal adhesion assembly|positive regulation of non-canonical Wnt receptor signaling pathway|positive regulation of Rac GTPase activity|positive regulation of smoothened signaling pathway|positive regulation of stress fiber assembly|positive regulation of transcription, DNA-dependent|regulation of angiogenesis|regulation of cell cycle process|response to drug|response to organic cyclic compound|vasculature development	cell surface|cytosol|extracellular space|plasma membrane|proteinaceous extracellular matrix	cysteine-type endopeptidase activity|drug binding|frizzled binding|heparin binding|identical protein binding|PDZ domain binding|Wnt receptor activity|Wnt-protein binding			central_nervous_system(1)	1	Breast(1;9.19e-13)|Ovarian(28;0.00769)|Colorectal(14;0.0305)|Lung SC(25;0.211)	all_lung(54;0.0034)|Lung NSC(58;0.0134)|Hepatocellular(245;0.023)|Esophageal squamous(32;0.0559)	BRCA - Breast invasive adenocarcinoma(1;1.11e-10)|LUSC - Lung squamous cell carcinoma(45;0.00894)|COAD - Colon adenocarcinoma(11;0.0174)			CTTGGGGCTTGGAGGCTTCGG	0.677													6	4					0	0	0.000157383	0	0
MYST3	7994	broad.mit.edu	37	8	41798546	41798546	+	Silent	SNP	G	C	C			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr8:41798546G>C	uc010lxb.2	-	16	3397	c.2853C>G	c.(2851-2853)CTC>CTG	p.L951L	MYST3_uc010lxc.2_Silent_p.L951L|MYST3_uc003xon.3_Silent_p.L951L	NM_001099412	NP_001092882	Q92794	MYST3_HUMAN	MYST histone acetyltransferase (monocytic	951					histone H3 acetylation|myeloid cell differentiation|negative regulation of transcription, DNA-dependent|nucleosome assembly|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MOZ/MORF histone acetyltransferase complex|nucleosome	DNA binding|histone acetyltransferase activity|transcription coactivator activity|transcription factor binding|zinc ion binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7	all_epithelial(6;1.12e-27)|all_lung(13;3.94e-12)|Lung NSC(13;6.54e-11)|Ovarian(28;0.00744)|Prostate(17;0.0119)|Colorectal(14;0.0221)|Lung SC(25;0.211)	all_lung(54;0.000294)|Lung NSC(58;0.00105)|Hepatocellular(245;0.0524)|Esophageal squamous(32;0.0954)|Renal(179;0.0983)	Epithelial(1;2.82e-19)|all cancers(1;1.15e-16)|BRCA - Breast invasive adenocarcinoma(8;9.17e-11)|OV - Ovarian serous cystadenocarcinoma(14;9.4e-05)|Colorectal(10;0.000728)|Lung(22;0.00153)|LUSC - Lung squamous cell carcinoma(45;0.00741)|COAD - Colon adenocarcinoma(11;0.0171)			GGCTTTTCTTGAGCTGTCCTC	0.582													5	142					0	0	8.12818e-05	0	0
IKBKB	3551	broad.mit.edu	37	8	42178259	42178259	+	Missense_Mutation	SNP	G	A	A	rs147186110		TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr8:42178259G>A	uc003xow.1	+	16	1762	c.1585G>A	c.(1585-1587)GAA>AAA	p.E529K	IKBKB_uc010lxh.1_3'UTR|IKBKB_uc011lco.1_RNA|IKBKB_uc010lxj.1_Missense_Mutation_p.E306K|IKBKB_uc003xox.1_Missense_Mutation_p.E250K|IKBKB_uc011lcp.1_RNA|IKBKB_uc011lcq.1_Missense_Mutation_p.E527K|IKBKB_uc010lxi.1_RNA|IKBKB_uc011lcr.1_Missense_Mutation_p.E470K	NM_001556	NP_001547	O14920	IKKB_HUMAN	inhibitor of nuclear factor kappa B kinase beta	529					anti-apoptosis|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of transcription, DNA-dependent|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	CD40 receptor complex|cytosol|internal side of plasma membrane|membrane raft	ATP binding|identical protein binding|IkappaB kinase activity			breast(3)|ovary(2)|lung(1)|skin(1)	7	all_cancers(6;1.42e-24)|all_epithelial(6;1.02e-25)|all_lung(13;6.21e-12)|Lung NSC(13;1.04e-10)|Ovarian(28;0.00769)|Prostate(17;0.0119)|Colorectal(14;0.0468)|Lung SC(25;0.211)	all_lung(54;0.000434)|Lung NSC(58;0.00161)|Hepatocellular(245;0.0524)|Renal(179;0.0822)|Esophageal squamous(32;0.0954)	BRCA - Breast invasive adenocarcinoma(8;1.37e-10)|Colorectal(10;0.00102)|OV - Ovarian serous cystadenocarcinoma(14;0.00168)|Lung(22;0.00467)|LUSC - Lung squamous cell carcinoma(45;0.024)|COAD - Colon adenocarcinoma(11;0.0264)		Arsenic trioxide(DB01169)|Auranofin(DB00995)	TTAGGAGAACGAAGTGAAACT	0.567													48	69					0	0	0.000781405	0	0
CLVS1	157807	broad.mit.edu	37	8	62370879	62370879	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr8:62370879G>A	uc003xuh.2	+	5	1079	c.755G>A	c.(754-756)GGA>GAA	p.G252E	CLVS1_uc003xui.2_RNA|CLVS1_uc010lyp.2_Intron	NM_173519	NP_775790	Q8IUQ0	CLVS1_HUMAN	retinaldehyde binding protein 1-like 1	252	CRAL-TRIO.				lysosome organization	clathrin-coated vesicle|early endosome membrane|trans-Golgi network	phosphatidylinositol-3,5-bisphosphate binding|transporter activity			skin(4)|ovary(1)	5						TTCCTGCATGGAAACAATTTA	0.378													60	123					0	0	0.000781405	0	0
CSPP1	79848	broad.mit.edu	37	8	68071358	68071359	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr8:68071358_68071359GG>TT	uc003xxi.2	+	21	2645_2646	c.2614_2615GG>TT	c.(2614-2616)GGG>TTG	p.G872L	CSPP1_uc003xxh.1_RNA|CSPP1_uc003xxj.2_Missense_Mutation_p.G837L|CSPP1_uc003xxk.2_Missense_Mutation_p.G492L	NM_001077204	NP_001070672	Q1MSJ5	CSPP1_HUMAN	centrosome spindle pole associated protein 1	872						centrosome|microtubule|spindle				ovary(3)|breast(2)	5	Breast(64;0.214)	Lung NSC(129;0.0908)|all_lung(136;0.152)	Epithelial(68;0.00145)|OV - Ovarian serous cystadenocarcinoma(28;0.00589)|all cancers(69;0.0069)|BRCA - Breast invasive adenocarcinoma(89;0.153)			CAATTTGATTGGGGAAGAAACA	0.277													11	366					0	0	6.4e-05	0	0
PREX2	80243	broad.mit.edu	37	8	68992729	68992729	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr8:68992729C>T	uc003xxv.1	+	16	1721	c.1694C>T	c.(1693-1695)TCG>TTG	p.S565L	PREX2_uc003xxu.1_Missense_Mutation_p.S565L|PREX2_uc011lez.1_Missense_Mutation_p.S500L	NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	565	DEP 2.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity	p.S565fs*3(2)		skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						CGTTTTTTTTCGGATGAGGAA	0.323													10	123					0	0	0.00010058	0	0
KCNB2	9312	broad.mit.edu	37	8	73848248	73848248	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr8:73848248G>A	uc003xzb.2	+	3	1246	c.658G>A	c.(658-660)GAA>AAA	p.E220K		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	220					regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			skin(3)|large_intestine(1)|pancreas(1)|ovary(1)|central_nervous_system(1)	7	Breast(64;0.137)		Epithelial(68;0.105)			GGAGCTGCAGGAAACGGACGA	0.473													48	191					0	0	0.000680045	0	0
KCNB2	9312	broad.mit.edu	37	8	73849053	73849053	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr8:73849053C>T	uc003xzb.2	+	3	2051	c.1463C>T	c.(1462-1464)TCG>TTG	p.S488L		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	488	Cytoplasmic (Potential).				regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			skin(3)|large_intestine(1)|pancreas(1)|ovary(1)|central_nervous_system(1)	7	Breast(64;0.137)		Epithelial(68;0.105)			AATCACCTGTCGCCAAGCCGG	0.527													25	163					0	0	0.00047179	0	0
JPH1	56704	broad.mit.edu	37	8	75227805	75227805	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr8:75227805G>A	uc003yae.2	-	2	470	c.430C>T	c.(430-432)CGC>TGC	p.R144C	JPH1_uc003yaf.2_Missense_Mutation_p.R144C|JPH1_uc003yag.1_Missense_Mutation_p.R8C	NM_020647	NP_065698	Q9HDC5	JPH1_HUMAN	junctophilin 1	144	Cytoplasmic (Potential).|MORN 5.				calcium ion transport into cytosol|regulation of ryanodine-sensitive calcium-release channel activity	integral to membrane|junctional membrane complex|junctional sarcoplasmic reticulum membrane|plasma membrane				ovary(1)	1	Breast(64;0.00576)		BRCA - Breast invasive adenocarcinoma(89;0.0499)|Epithelial(68;0.0728)|all cancers(69;0.176)			ACGCTCTGGCGCACGCCGTAG	0.682													7	33					0	0	0.000157383	0	0
JPH1	56704	broad.mit.edu	37	8	75227821	75227821	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr8:75227821C>T	uc003yae.2	-	2	454	c.414G>A	c.(412-414)CGG>CGA	p.R138R	JPH1_uc003yaf.2_Silent_p.R138R|JPH1_uc003yag.1_Silent_p.R2R	NM_020647	NP_065698	Q9HDC5	JPH1_HUMAN	junctophilin 1	138	Gly-rich.|Cytoplasmic (Potential).|MORN 5.				calcium ion transport into cytosol|regulation of ryanodine-sensitive calcium-release channel activity	integral to membrane|junctional membrane complex|junctional sarcoplasmic reticulum membrane|plasma membrane				ovary(1)	1	Breast(64;0.00576)		BRCA - Breast invasive adenocarcinoma(89;0.0499)|Epithelial(68;0.0728)|all cancers(69;0.176)			CGTAGCCATGCCGCATGCCTC	0.677													13	33					0	0	0.000566183	0	0
ZFHX4	79776	broad.mit.edu	37	8	77616627	77616627	+	Missense_Mutation	SNP	A	C	C			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr8:77616627A>C	uc003yav.2	+	2	691	c.304A>C	c.(304-306)AAT>CAT	p.N102H	ZFHX4_uc003yat.1_Missense_Mutation_p.N102H|ZFHX4_uc003yau.1_Missense_Mutation_p.N102H|ZFHX4_uc003yaw.1_Missense_Mutation_p.N102H	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	102						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			CCACTGCCCTAATGCCCGCCT	0.507										HNSCC(33;0.089)			19	212					0	0	0.000375601	0	0
FABP5	2171	broad.mit.edu	37	8	82196159	82196159	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr8:82196159G>A	uc003yca.1	+	3	352	c.304G>A	c.(304-306)GGG>AGG	p.G102R		NM_001444	NP_001435	Q01469	FABP5_HUMAN	fatty acid binding protein 5	102					epidermis development	cytoplasm	fatty acid binding|protein binding|transporter activity				0	Lung NSC(7;3.57e-05)|all_lung(9;0.00011)		Epithelial(68;0.102)			GGAGTGGGATGGGAAGGAAAG	0.398													4	19					0	0	0.000602214	0	0
CALB1	793	broad.mit.edu	37	8	91072436	91072436	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr8:91072436C>T	uc003yel.1	-	11	933	c.751G>A	c.(751-753)GAT>AAT	p.D251N	CALB1_uc011lge.1_Missense_Mutation_p.D194N	NM_004929	NP_004920	P05937	CALB1_HUMAN	calbindin 1	251						nucleus	calcium ion binding|vitamin D binding			pancreas(1)	1			BRCA - Breast invasive adenocarcinoma(11;0.00953)			AGAGCAAGATCCGTTCGGTAC	0.398													15	106					0	0	0.00074312	0	0
CDH17	1015	broad.mit.edu	37	8	95201472	95201472	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr8:95201472C>T	uc003ygh.2	-	3	218	c.93G>A	c.(91-93)CTG>CTA	p.L31L	CDH17_uc011lgo.1_Silent_p.L31L|CDH17_uc011lgp.1_Silent_p.L31L	NM_004063	NP_004054	Q12864	CAD17_HUMAN	cadherin 17 precursor	31	Extracellular (Potential).|Cadherin 1.					integral to membrane	calcium ion binding			ovary(5)|skin(1)	6	Breast(36;4.65e-06)		BRCA - Breast invasive adenocarcinoma(8;0.00691)			TCATGGGTTTCAGGGGTCCAC	0.393													26	102					0	0	0.00058488	0	0
KIAA1429	25962	broad.mit.edu	37	8	95556100	95556101	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr8:95556100_95556101GG>TT	uc003ygo.1	-	2	146_147	c.133_134CC>AA	c.(133-135)CCA>AAA	p.P45K	KIAA1429_uc003ygp.2_Missense_Mutation_p.P45K	NM_015496	NP_056311	Q69YN4	VIR_HUMAN	hypothetical protein LOC25962 isoform 1	45					mRNA processing|RNA splicing	nucleus				ovary(1)|skin(1)	2	Breast(36;3.29e-05)		BRCA - Breast invasive adenocarcinoma(8;0.00185)			TCTTACTCCTGGGGGTATGACT	0.401													13	598					0	0	6.4e-05	0	0
ESRP1	54845	broad.mit.edu	37	8	95674561	95674562	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr8:95674561_95674562GG>TT	uc003ygq.3	+	5	735_736	c.552_553GG>TT	c.(550-555)ATGGGG>ATTTGG	p.184_185MG>IW	ESRP1_uc003ygr.3_Missense_Mutation_p.184_185MG>IW|ESRP1_uc003ygs.3_Missense_Mutation_p.184_185MG>IW|ESRP1_uc003ygt.3_Missense_Mutation_p.184_185MG>IW|ESRP1_uc003ygu.3_Missense_Mutation_p.184_185MG>IW|ESRP1_uc003ygv.2_Missense_Mutation_p.24_25MG>IW|ESRP1_uc003ygw.2_Missense_Mutation_p.24_25MG>IW	NM_017697	NP_060167	Q6NXG1	ESRP1_HUMAN	RNA binding motif protein 35A isoform 1	184_185					mRNA processing|regulation of RNA splicing|RNA splicing	nucleus|plasma membrane	mRNA binding|nucleotide binding		ESRP1/RAF1(4)	prostate(4)	4						TTGAAGATATGGGGAATATAAT	0.327													15	759					0	0	6.4e-05	0	0
ESRP1	54845	broad.mit.edu	37	8	95709088	95709089	+	Nonsense_Mutation	DNP	CG	AT	AT			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr8:95709088_95709089CG>AT	uc003ygq.3	+	15	2163_2164	c.1980_1981CG>AT	c.(1978-1983)ACCGAG>ACATAG	p.E661*	ESRP1_uc003ygr.3_Nonsense_Mutation_p.E657*|ESRP1_uc003ygs.3_Intron|ESRP1_uc003ygt.3_Intron|ESRP1_uc003ygu.3_Intron|ESRP1_uc003ygv.2_Intron|ESRP1_uc003ygw.2_Missense_Mutation_p.P450H	NM_017697	NP_060167	Q6NXG1	ESRP1_HUMAN	RNA binding motif protein 35A isoform 1	661					mRNA processing|regulation of RNA splicing|RNA splicing	nucleus|plasma membrane	mRNA binding|nucleotide binding		ESRP1/RAF1(4)	prostate(4)	4						AGTATGCAACCGAGGATGGACT	0.386													13	399					0	0	6.4e-05	0	0
DPY19L4	286148	broad.mit.edu	37	8	95751915	95751915	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr8:95751915G>T	uc003ygx.2	+	6	632	c.508G>T	c.(508-510)GGA>TGA	p.G170*	DPY19L4_uc003ygy.2_Nonsense_Mutation_p.G107*	NM_181787	NP_861452	Q7Z388	D19L4_HUMAN	dpy-19-like 4	170	Helical; (Potential).					integral to membrane				ovary(2)	2	Breast(36;3.85e-06)					CATTGTTTTTGGATTGCAAGG	0.353													15	882					0.000422831	0.00524024	0.000422831	1	0
INTS8	55656	broad.mit.edu	37	8	95862268	95862269	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr8:95862268_95862269CC>AA	uc003yhb.2	+	12	1582_1583	c.1456_1457CC>AA	c.(1456-1458)CCT>AAT	p.P486N	INTS8_uc003yha.1_Missense_Mutation_p.P486N|INTS8_uc011lgq.1_RNA|INTS8_uc011lgr.1_RNA|INTS8_uc010mba.2_Missense_Mutation_p.P313N	NM_017864	NP_060334	Q75QN2	INT8_HUMAN	integrator complex subunit 8	486					snRNA processing	integrator complex	protein binding				0	Breast(36;1.05e-06)					GAAGAGATCCCCTAGAGTAAAT	0.391													17	703					0	0	6.4e-05	0	0
INTS8	55656	broad.mit.edu	37	8	95888484	95888485	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr8:95888484_95888485GG>TT	uc003yhb.2	+	25	2924_2925	c.2798_2799GG>TT	c.(2797-2799)TGG>TTT	p.W933F	INTS8_uc011lgq.1_RNA|INTS8_uc011lgr.1_RNA|INTS8_uc010mba.2_Missense_Mutation_p.W743F	NM_017864	NP_060334	Q75QN2	INT8_HUMAN	integrator complex subunit 8	933					snRNA processing	integrator complex	protein binding				0	Breast(36;1.05e-06)					GACTACATATGGGATGTTACCA	0.297													22	806					0	0	6.4e-05	0	0
CCNE2	9134	broad.mit.edu	37	8	95902774	95902775	+	Nonsense_Mutation	DNP	CC	AA	AA			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr8:95902774_95902775CC>AA	uc003yhc.2	-	6	430_431	c.321_322GG>TT	c.(319-324)TGGGGA>TGTTGA	p.107_108WG>C*	CCNE2_uc003yhd.2_Nonsense_Mutation_p.107_108WG>C*	NM_057749	NP_477097	O96020	CCNE2_HUMAN	cyclin E2	107_108					cell cycle checkpoint|cell division|G1/S transition of mitotic cell cycle|regulation of cyclin-dependent protein kinase activity	cytosol|nucleoplasm	protein kinase binding				0	Breast(36;8.75e-07)					TTTGAACATCCCCAGCTATGGA	0.243													13	439					0	0	6.4e-05	0	0
CCNE2	9134	broad.mit.edu	37	8	95906297	95906298	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr8:95906297_95906298GG>TT	uc003yhc.2	-	3	173_174	c.64_65CC>AA	c.(64-66)CCC>AAC	p.P22N	C8orf38_uc003yhe.1_5'Flank|C8orf38_uc003yhf.2_5'Flank|CCNE2_uc003yhd.2_Missense_Mutation_p.P22N	NM_057749	NP_477097	O96020	CCNE2_HUMAN	cyclin E2	22					cell cycle checkpoint|cell division|G1/S transition of mitotic cell cycle|regulation of cyclin-dependent protein kinase activity	cytosol|nucleoplasm	protein kinase binding				0	Breast(36;8.75e-07)					GGCTTCTTGGGGGGATTCCGTC	0.45													15	779					0	0	6.4e-05	0	0
VPS13B	157680	broad.mit.edu	37	8	100796656	100796656	+	Silent	SNP	G	A	A	rs145460276		TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr8:100796656G>A	uc003yiv.2	+	43	8079	c.7968G>A	c.(7966-7968)GCG>GCA	p.A2656A	VPS13B_uc003yiw.2_Silent_p.A2631A	NM_017890	NP_060360	Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13B isoform 5	2656					protein transport					ovary(7)|skin(4)|lung(3)|central_nervous_system(2)|pancreas(2)|breast(1)|kidney(1)	20	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			TTCTGCTGGCGAGTCTCCACA	0.473													13	38					0	0	0.00010058	0	0
RIMS2	9699	broad.mit.edu	37	8	104948865	104948865	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr8:104948865G>A	uc003yls.2	+	11	2037	c.1796G>A	c.(1795-1797)CGA>CAA	p.R599Q	RIMS2_uc003ylp.2_Missense_Mutation_p.R821Q|RIMS2_uc003ylw.2_Missense_Mutation_p.R613Q|RIMS2_uc003ylq.2_Missense_Mutation_p.R613Q|RIMS2_uc003ylr.2_Missense_Mutation_p.R660Q|RIMS2_uc003ylt.2_Missense_Mutation_p.R206Q	NM_014677	NP_055492	Q9UQ26	RIMS2_HUMAN	regulating synaptic membrane exocytosis 2	883	C2 1.				intracellular protein transport	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(6)|lung(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	15			OV - Ovarian serous cystadenocarcinoma(57;7.7e-07)|STAD - Stomach adenocarcinoma(118;0.229)			CCAGTCCACCGAAGAGAATTT	0.388										HNSCC(12;0.0054)			43	124					0	0	0.000437636	0	0
TM7SF4	81501	broad.mit.edu	37	8	105368372	105368372	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr8:105368372C>T	uc003ylx.1	+	4	1408	c.1359C>T	c.(1357-1359)GTC>GTT	p.V453V		NM_030788	NP_110415	Q9H295	TM7S4_HUMAN	dendritic cell-specific transmembrane protein	453	Cytoplasmic.				osteoclast differentiation	cell surface|integral to membrane|plasma membrane				pancreas(2)|large_intestine(1)|ovary(1)	4			OV - Ovarian serous cystadenocarcinoma(57;1.61e-06)|STAD - Stomach adenocarcinoma(118;0.229)			GGCTTCCAGTCCTGAAAATGA	0.428													5	20					0	0	8.12818e-05	0	0
DPYS	1807	broad.mit.edu	37	8	105463544	105463544	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr8:105463544C>T	uc003yly.3	-	2	482	c.353G>A	c.(352-354)CGA>CAA	p.R118Q		NM_001385	NP_001376	Q14117	DPYS_HUMAN	dihydropyrimidinase	118					protein homotetramerization|pyrimidine nucleoside catabolic process|thymine catabolic process|uracil catabolic process	cytosol	dihydropyrimidinase activity|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2			OV - Ovarian serous cystadenocarcinoma(57;1.61e-06)|STAD - Stomach adenocarcinoma(118;0.229)			AGCCCAGCTTCGCCAGGTCTC	0.522													17	39					0	0	0.000132079	0	0
TTC35	9694	broad.mit.edu	37	8	109489041	109489041	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr8:109489041C>T	uc003ymw.1	+	9	657	c.622C>T	c.(622-624)CTC>TTC	p.L208F		NM_014673	NP_055488	Q15006	TTC35_HUMAN	tetratricopeptide repeat domain 35	208	TPR 3.					endoplasmic reticulum|nucleus	binding			ovary(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(57;2.34e-10)			ACTTGAAAACCTCGAACTTTC	0.338													7	25					0	0	8.12818e-05	0	0
TRHR	7201	broad.mit.edu	37	8	110100443	110100443	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr8:110100443G>A	uc003ymz.3	+	1	718	c.702G>A	c.(700-702)TGG>TGA	p.W234*		NM_003301	NP_003292	P34981	TRFR_HUMAN	thyrotropin-releasing hormone receptor	234	Cytoplasmic (Potential).					integral to plasma membrane	thyrotropin-releasing hormone receptor activity			skin(2)|lung(1)	3			OV - Ovarian serous cystadenocarcinoma(57;2.3e-11)			CTAAGACATGGAAAAATGATT	0.378													18	29					0	0	0.00074312	0	0
NUDCD1	84955	broad.mit.edu	37	8	110255463	110255463	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr8:110255463G>A	uc003ynb.3	-	10	1638	c.1527C>T	c.(1525-1527)GCC>GCT	p.A509A	NUDCD1_uc003yna.2_Silent_p.A480A|NUDCD1_uc010mcl.2_Silent_p.A422A	NM_032869	NP_116258	Q96RS6	NUDC1_HUMAN	NudC domain containing 1 isoform 1	509								p.A509A(1)		ovary(1)|breast(1)	2	all_neural(195;0.219)		OV - Ovarian serous cystadenocarcinoma(57;1.56e-12)			ACTCACAAAGGGCTGCATACG	0.438													12	99					0	0	0.000151284	0	0
TRPS1	7227	broad.mit.edu	37	8	116599467	116599467	+	Missense_Mutation	SNP	G	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr8:116599467G>T	uc003ynz.2	-	4	2881	c.2422C>A	c.(2422-2424)CAA>AAA	p.Q808K	TRPS1_uc011lhy.1_Missense_Mutation_p.Q812K|TRPS1_uc003yny.2_Missense_Mutation_p.Q821K|TRPS1_uc010mcy.2_Missense_Mutation_p.Q808K	NM_014112	NP_054831	Q9UHF7	TRPS1_HUMAN	zinc finger transcription factor TRPS1	808	Mediates interaction with GLI3.				negative regulation of transcription from RNA polymerase II promoter|NLS-bearing substrate import into nucleus|regulation of chondrocyte differentiation|skeletal system development|transcription from RNA polymerase II promoter	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|skin(2)|pancreas(1)|lung(1)|kidney(1)	7	all_cancers(13;5.44e-23)|all_epithelial(1;2.14e-27)|Lung NSC(37;2.55e-05)|Ovarian(258;0.0219)		Epithelial(1;9.78e-37)|all cancers(1;3.14e-31)|BRCA - Breast invasive adenocarcinoma(1;2.56e-12)			AGGCTTGCTTGGGTGTATGAC	0.587									Langer-Giedion_syndrome				8	177					0.000442599	0.00548033	0.000442599	1	0
COL14A1	7373	broad.mit.edu	37	8	121357718	121357718	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr8:121357718C>T	uc003yox.2	+	45	5258	c.4993C>T	c.(4993-4995)CCT>TCT	p.P1665S	COL14A1_uc003yoz.2_Missense_Mutation_p.P630S	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	1665	Triple-helical region 2 (COL1).				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			GCCAGGCTCACCTGGAGCCCC	0.647													21	52					0	0	0.00047179	0	0
FAM91A1	157769	broad.mit.edu	37	8	124787428	124787428	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr8:124787428C>T	uc003yqv.2	+	3	260	c.199C>T	c.(199-201)CTG>TTG	p.L67L	FAM91A1_uc011lik.1_Silent_p.L67L|FAM91A1_uc011lil.1_5'UTR	NM_144963	NP_659400	Q658Y4	F91A1_HUMAN	hypothetical protein LOC157769	67										ovary(1)|central_nervous_system(1)	2	Lung NSC(37;8.76e-13)|Ovarian(258;0.00744)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00192)			CTATGAGGAACTGCTAAAGTA	0.363													8	67					0	0	0.000157383	0	0
FAM91A1	157769	broad.mit.edu	37	8	124818335	124818335	+	Missense_Mutation	SNP	A	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr8:124818335A>T	uc003yqv.2	+	20	1959	c.1898A>T	c.(1897-1899)AAT>ATT	p.N633I	FAM91A1_uc011lik.1_Missense_Mutation_p.N633I|FAM91A1_uc011lil.1_Missense_Mutation_p.N391I	NM_144963	NP_659400	Q658Y4	F91A1_HUMAN	hypothetical protein LOC157769	633										ovary(1)|central_nervous_system(1)	2	Lung NSC(37;8.76e-13)|Ovarian(258;0.00744)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00192)			ACTCGTGTCAATATGGGTGTT	0.388													12	82					0	0	0.000151284	0	0
FER1L6	654463	broad.mit.edu	37	8	124987451	124987451	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr8:124987451C>T	uc003yqw.2	+	8	794	c.588C>T	c.(586-588)ACC>ACT	p.T196T		NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	196	Cytoplasmic (Potential).					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			GGACTGGCACCAAGGGGTACC	0.502													35	73					0	0	0.000228196	0	0
SQLE	6713	broad.mit.edu	37	8	126021462	126021462	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr8:126021462C>T	uc011liq.1	+	6	1911	c.985C>T	c.(985-987)CCG>TCG	p.P329S		NM_003129	NP_003120	Q14534	ERG1_HUMAN	squalene epoxidase	329					cholesterol biosynthetic process	endoplasmic reticulum membrane|integral to membrane|microsome	flavin adenine dinucleotide binding|squalene monooxygenase activity			ovary(1)|breast(1)	2	Ovarian(258;0.0028)|all_neural(195;0.00294)|Hepatocellular(40;0.108)		STAD - Stomach adenocarcinoma(47;0.000918)|COAD - Colon adenocarcinoma(160;0.205)		Butenafine(DB01091)|Naftifine(DB00735)|Terbinafine(DB00857)	TTTAGCTAACCCGAGTCCAGT	0.323													53	218					0	0	0.000781405	0	0
TRIB1	10221	broad.mit.edu	37	8	126448703	126448703	+	Missense_Mutation	SNP	T	C	C			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr8:126448703T>C	uc003yrx.2	+	3	1691	c.1109T>C	c.(1108-1110)TTC>TCC	p.F370S	TRIB1_uc011lis.1_Missense_Mutation_p.F204S|TRIB1_uc010mdn.2_Missense_Mutation_p.F139S	NM_025195	NP_079471	Q96RU8	TRIB1_HUMAN	G-protein-coupled receptor induced protein	370					JNK cascade|negative regulation of lipopolysaccharide-mediated signaling pathway|negative regulation of protein kinase activity|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of smooth muscle cell migration|negative regulation of smooth muscle cell proliferation|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|regulation of MAP kinase activity|response to lipopolysaccharide	cytoplasm|nucleus	ATP binding|mitogen-activated protein kinase kinase binding|protein kinase activity|protein kinase inhibitor activity|transcription factor binding|ubiquitin protein ligase binding|ubiquitin-protein ligase regulator activity			lung(1)	1	all_hematologic(1;4.97e-05)|Ovarian(258;0.00167)|all_neural(195;0.00294)|Hepatocellular(40;0.108)		STAD - Stomach adenocarcinoma(47;0.000918)			ATTAGTTCCTTCTTCTGCTAA	0.463													95	156					0	0	0.000781405	0	0
KCNQ3	3786	broad.mit.edu	37	8	133153407	133153407	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr8:133153407C>T	uc003ytj.2	-	10	1659	c.1434G>A	c.(1432-1434)ATG>ATA	p.M478I	KCNQ3_uc010mdt.2_Missense_Mutation_p.M478I	NM_004519	NP_004510	O43525	KCNQ3_HUMAN	potassium voltage-gated channel KQT-like protein	478					axon guidance|synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Esophageal squamous(12;0.00507)|Ovarian(258;0.00579)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000311)			CGTAGGCTTTCATGCGGAAGG	0.478													49	131					0	0	0.000781405	0	0
KCNQ3	3786	broad.mit.edu	37	8	133184869	133184869	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr8:133184869C>T	uc003ytj.2	-	7	1341	c.1116G>A	c.(1114-1116)AGG>AGA	p.R372R	KCNQ3_uc010mdt.2_Silent_p.R372R	NM_004519	NP_004510	O43525	KCNQ3_HUMAN	potassium voltage-gated channel KQT-like protein	372					axon guidance|synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Esophageal squamous(12;0.00507)|Ovarian(258;0.00579)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000311)			CAGCTGGCTTCCTCCTTTTCT	0.507													15	188					0	0	0.000958276	0	0
ZFAT	57623	broad.mit.edu	37	8	135614365	135614365	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr8:135614365C>T	uc003yup.2	-	6	1772	c.1597G>A	c.(1597-1599)GAA>AAA	p.E533K	ZFAT_uc003yun.2_Missense_Mutation_p.E521K|ZFAT_uc003yuo.2_Missense_Mutation_p.E521K|ZFAT_uc010meh.2_Missense_Mutation_p.E521K|ZFAT_uc010mei.2_RNA|ZFAT_uc003yuq.2_Missense_Mutation_p.E521K|ZFAT_uc010mej.2_Missense_Mutation_p.E471K|ZFAT_uc003yur.2_Missense_Mutation_p.E521K	NM_020863	NP_065914	Q9P243	ZFAT_HUMAN	zinc finger protein 406 isoform ZFAT-1	533					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1	all_epithelial(106;8.26e-19)|Lung NSC(106;3.47e-07)|all_lung(105;1.39e-06)|Ovarian(258;0.0102)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0432)			CAGGCCTCTTCCTTGAGTGCA	0.652													5	10					0	0	3.59834e-05	0	0
FAM135B	51059	broad.mit.edu	37	8	139164878	139164878	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr8:139164878C>T	uc003yuy.2	-	13	2011	c.1840G>A	c.(1840-1842)GAA>AAA	p.E614K	FAM135B_uc003yux.2_Missense_Mutation_p.E515K|FAM135B_uc003yuz.2_RNA|FAM135B_uc003yva.2_Missense_Mutation_p.E176K|FAM135B_uc003yvb.2_Missense_Mutation_p.E176K	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	614										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			GTACTTAATTCATGGAGAGTT	0.453										HNSCC(54;0.14)			17	137					0	0	0.000958276	0	0
TRAPPC9	83696	broad.mit.edu	37	8	141034135	141034135	+	Silent	SNP	C	G	G			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr8:141034135C>G	uc003yvj.2	-	18	2732	c.2598G>C	c.(2596-2598)CCG>CCC	p.P866P	TRAPPC9_uc003yvh.2_Silent_p.P964P|TRAPPC9_uc010mel.1_Silent_p.P287P|TRAPPC9_uc003yvi.1_Silent_p.P857P	NM_001160372	NP_001153844	Q96Q05	TPPC9_HUMAN	trafficking protein particle complex 9 isoform	866					cell differentiation	endoplasmic reticulum|Golgi apparatus				skin(2)	2						CAGTGTGGCCCGGGCCTCCAG	0.453													4	96					0	0	0.000602214	0	0
EIF2C2	27161	broad.mit.edu	37	8	141566090	141566090	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr8:141566090G>A	uc003yvn.2	-	10	1214	c.1174C>T	c.(1174-1176)CCA>TCA	p.P392S	EIF2C2_uc010men.2_Missense_Mutation_p.P315S|EIF2C2_uc010meo.2_Missense_Mutation_p.P392S	NM_012154	NP_036286	Q9UKV8	AGO2_HUMAN	argonaute 2 isoform 1	392					mRNA cleavage involved in gene silencing by miRNA|negative regulation of translation involved in gene silencing by miRNA|negative regulation of translational initiation|pre-miRNA processing|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol|micro-ribonucleoprotein complex|mRNA cap binding complex|nucleus|polysome|RNA-induced silencing complex	endoribonuclease activity, cleaving siRNA-paired mRNA|metal ion binding|protein binding|RNA 7-methylguanosine cap binding|siRNA binding|translation initiation factor activity				0	all_cancers(97;2.54e-14)|all_epithelial(106;5.99e-13)|Lung NSC(106;1.45e-05)|all_lung(105;2.07e-05)|Ovarian(258;0.0154)|Acute lymphoblastic leukemia(118;0.155)	Breast(495;0.159)	BRCA - Breast invasive adenocarcinoma(115;0.158)			CGGACGTATGGATCTGTGTTG	0.562													35	66					0	0	0.000319135	0	0
OPLAH	26873	broad.mit.edu	37	8	145114770	145114770	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr8:145114770C>T	uc003zar.3	-	2	248	c.166G>A	c.(166-168)GAG>AAG	p.E56K	OPLAH_uc003zat.1_5'Flank	NM_017570	NP_060040	O14841	OPLA_HUMAN	5-oxoprolinase (ATP-hydrolysing)	56							5-oxoprolinase (ATP-hydrolyzing) activity|ATP binding				0	all_cancers(97;1.06e-10)|all_epithelial(106;1.5e-09)|Lung NSC(106;5.89e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;6.79e-41)|Epithelial(56;1.02e-39)|all cancers(56;2.24e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)		L-Glutamic Acid(DB00142)	CCCACCTGCTCCAGGATGCGG	0.697													5	47					0	0	8.12818e-05	0	0
NFKBIL2	4796	broad.mit.edu	37	8	145659433	145659433	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr8:145659433G>A	uc011llg.1	-	21	3330	c.3315C>T	c.(3313-3315)CTC>CTT	p.L1105L	uc011llh.1_5'Flank	NM_013432	NP_038460	Q96HA7	TONSL_HUMAN	NF-kappa-B inhibitor-like protein 2	1105	LRR 2.				cytoplasmic sequestering of transcription factor|double-strand break repair via homologous recombination|replication fork processing	cytoplasm|nuclear replication fork	histone binding|transcription corepressor activity				0	all_cancers(97;4.61e-11)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.08e-41)|Epithelial(56;8.67e-41)|all cancers(56;1.1e-35)|BRCA - Breast invasive adenocarcinoma(115;0.035)|Colorectal(110;0.055)			GATTGGAGGAGAGGTCAAGGA	0.677													15	28					0	0	0.000566183	0	0
ZNF16	7564	broad.mit.edu	37	8	146157649	146157650	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr8:146157649_146157650GG>TT	uc003zet.2	-	4	710_711	c.523_524CC>AA	c.(523-525)CCT>AAT	p.P175N	ZNF16_uc003zeu.2_Missense_Mutation_p.P175N	NM_001029976	NP_001025147	P17020	ZNF16_HUMAN	zinc finger protein 16	175					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(5)	5	all_cancers(97;8.72e-12)|all_epithelial(106;1.07e-10)|Lung NSC(106;7.18e-05)|all_lung(105;0.00021)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)	Acute lymphoblastic leukemia(644;0.136)	Epithelial(56;3.45e-38)|all cancers(56;3.04e-33)|BRCA - Breast invasive adenocarcinoma(115;0.0424)|Colorectal(110;0.055)	GBM - Glioblastoma multiforme(99;0.02)|KIRC - Kidney renal clear cell carcinoma(644;0.0486)		CTCTTCTGTAGGGATTTCCTGA	0.535													12	234					0	0	6.4e-05	0	0
CBWD1	55871	broad.mit.edu	37	9	172083	172084	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr9:172083_172084GG>TT	uc003zga.3	-	4	533_534	c.427_428CC>AA	c.(427-429)CCT>AAT	p.P143N	CBWD1_uc003zgb.3_Missense_Mutation_p.P107N|CBWD1_uc003zgc.3_Missense_Mutation_p.P143N|CBWD1_uc011llr.1_Missense_Mutation_p.P107N	NM_018491	NP_060961	Q9BRT8	CBWD1_HUMAN	COBW domain containing 1 isoform 1	143							ATP binding|protein binding			ovary(1)	1	all_lung(41;0.218)	all_cancers(5;3.04e-16)|all_epithelial(5;4.68e-12)|all_lung(10;1.94e-10)|Lung NSC(10;3.61e-10)|Acute lymphoblastic leukemia(5;0.00439)|Breast(48;0.0148)|all_hematologic(5;0.024)|Prostate(43;0.122)	Kidney(42;0.112)|KIRC - Kidney renal clear cell carcinoma(5;0.157)	all cancers(5;0.000704)|Lung(218;0.00755)|GBM - Glioblastoma multiforme(5;0.0149)|Epithelial(6;0.0154)		CTTCTTACCAGGGTCTGCTAAT	0.347													14	363					0	0	6.4e-05	0	0
DOCK8	81704	broad.mit.edu	37	9	382626	382626	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr9:382626G>A	uc003zgf.2	+	22	2831	c.2719G>A	c.(2719-2721)GAC>AAC	p.D907N	DOCK8_uc010mgu.2_Missense_Mutation_p.D209N|DOCK8_uc010mgv.2_Missense_Mutation_p.D839N|DOCK8_uc010mgw.1_Missense_Mutation_p.D209N|DOCK8_uc003zgk.2_Missense_Mutation_p.D365N	NM_203447	NP_982272	Q8NF50	DOCK8_HUMAN	dedicator of cytokinesis 8	907					blood coagulation	cytosol	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			ovary(3)|central_nervous_system(3)	6		all_cancers(5;2.13e-17)|all_epithelial(5;2.15e-12)|all_lung(10;6.69e-11)|Lung NSC(10;1.08e-10)|Acute lymphoblastic leukemia(5;0.000242)|all_hematologic(5;0.00317)|Breast(48;0.0151)|Prostate(43;0.128)		all cancers(5;9.3e-07)|GBM - Glioblastoma multiforme(5;2.41e-06)|Epithelial(6;0.00557)|Lung(218;0.00942)		CAGTAACCCAGACCTCGCGGG	0.562													9	29					0	0	0.000442599	0	0
C9orf150	286343	broad.mit.edu	37	9	12821469	12821469	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr9:12821469G>A	uc003zkw.2	+	2	1100	c.397G>A	c.(397-399)GAA>AAA	p.E133K		NM_203403	NP_981948	Q8IV03	CI150_HUMAN	hypothetical protein LOC286343	136											0				GBM - Glioblastoma multiforme(1;1.64e-13)		GTGGATGATCGAAGAAAAAGC	0.517													39	42					0	0	0.000191422	0	0
FREM1	158326	broad.mit.edu	37	9	14863874	14863874	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr9:14863874C>T	uc003zlm.2	-	3	852	c.262G>A	c.(262-264)GAA>AAA	p.E88K	FREM1_uc010mic.2_RNA	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	88					cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		TACTTGACTTCGTTGGGAAGG	0.413													7	46					0	0	0.000673444	0	0
BNC2	54796	broad.mit.edu	37	9	16419500	16419500	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr9:16419500G>A	uc003zml.2	-	7	2927	c.2787C>T	c.(2785-2787)CTC>CTT	p.L929L	BNC2_uc011lmw.1_Silent_p.L834L|BNC2_uc003zmm.2_3'UTR|BNC2_uc011lmv.1_3'UTR|BNC2_uc003zmj.2_3'UTR|BNC2_uc003zmk.2_RNA|BNC2_uc003zmi.2_Silent_p.L716L	NM_017637	NP_060107	Q6ZN30	BNC2_HUMAN	basonuclin 2	929					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	zinc ion binding			ovary(2)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(50;9.01e-08)		CCCTGACATCGAGCCCCATGG	0.577													21	77					0	0	0.000229342	0	0
ELAVL2	1993	broad.mit.edu	37	9	23692855	23692855	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr9:23692855C>T	uc003zpu.2	-	7	1055	c.780G>A	c.(778-780)ATG>ATA	p.M260I	ELAVL2_uc003zps.2_Missense_Mutation_p.M247I|ELAVL2_uc003zpt.2_Missense_Mutation_p.M247I|ELAVL2_uc003zpv.2_Missense_Mutation_p.M260I|ELAVL2_uc003zpw.2_Missense_Mutation_p.M247I	NM_004432	NP_004423	Q12926	ELAV2_HUMAN	ELAV (embryonic lethal, abnormal vision,	260					regulation of transcription, DNA-dependent		mRNA 3'-UTR binding|nucleotide binding|protein binding			ovary(2)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(1;2.18e-156)|Lung(42;2.15e-28)|LUSC - Lung squamous cell carcinoma(38;1.02e-19)		CCAAACTGGTCATTCCGTCAA	0.433													9	28					0	0	0.000442599	0	0
TAF1L	138474	broad.mit.edu	37	9	32632781	32632781	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr9:32632781C>T	uc003zrg.1	-	1	2887	c.2797G>A	c.(2797-2799)GAA>AAA	p.E933K	uc003zrh.1_5'Flank	NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	933					male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		TCCTCATTTTCTTCTTCTGGG	0.463													18	91					0	0	0.000175454	0	0
C9orf131	138724	broad.mit.edu	37	9	35045092	35045092	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr9:35045092C>T	uc003zvw.2	+	2	2495	c.2466C>T	c.(2464-2466)TTC>TTT	p.F822F	C9orf131_uc003zvu.2_Silent_p.F774F|C9orf131_uc003zvv.2_Silent_p.F749F|C9orf131_uc003zvx.2_Silent_p.F787F	NM_203299	NP_976044	Q5VYM1	CI131_HUMAN	hypothetical protein LOC138724 isoform A	822											0	all_epithelial(49;0.22)		LUSC - Lung squamous cell carcinoma(32;0.00117)|Lung(28;0.00309)			TTCCAGACTTCTGGGGACTCC	0.552													26	226					0	0	0.000339439	0	0
RORB	6096	broad.mit.edu	37	9	77280476	77280476	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr9:77280476G>A	uc004aji.2	+	7	1047	c.998G>A	c.(997-999)GGA>GAA	p.G333E	RORB_uc004ajh.2_Missense_Mutation_p.G322E	NM_006914	NP_008845	Q92753	RORB_HUMAN	RAR-related orphan receptor B	333	Ligand-binding (Potential).				eye photoreceptor cell development|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|visual perception	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(2)|lung(1)|skin(1)	4						CTGTTTGAAGGAAAATATGGA	0.353													20	90					0	0	0.000375601	0	0
PCSK5	5125	broad.mit.edu	37	9	78784688	78784688	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr9:78784688G>A	uc004ajz.2	+	13	2226	c.1688G>A	c.(1687-1689)AGA>AAA	p.R563K	PCSK5_uc004ajy.2_Missense_Mutation_p.R563K|PCSK5_uc004aka.2_RNA	NM_006200	NP_006191	Q92824	PCSK5_HUMAN	proprotein convertase subtilisin/kexin type 5	563	Homo B/P.				anterior/posterior pattern formation|cell-cell signaling|cytokine biosynthetic process|embryo implantation|embryonic digestive tract development|embryonic skeletal system development|heart development|kidney development|limb morphogenesis|nerve growth factor processing|nerve growth factor receptor signaling pathway|peptide biosynthetic process|renin secretion into blood stream|respiratory tube development|signal peptide processing|viral assembly, maturation, egress, and release	extracellular space|Golgi lumen|stored secretory granule	peptide binding|serine-type endopeptidase activity			ovary(2)|skin(1)	3						TGGGGAGAAAGAGCTGCTGGT	0.423													39	49					0	0	0.000437636	0	0
KIAA1529	57653	broad.mit.edu	37	9	100116955	100116955	+	Missense_Mutation	SNP	T	C	C			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr9:100116955T>C	uc011lut.1	+	35	4429	c.3656T>C	c.(3655-3657)ATG>ACG	p.M1219T	KIAA1529_uc004axe.1_Missense_Mutation_p.M1051T|KIAA1529_uc004axg.1_Missense_Mutation_p.M1080T|KIAA1529_uc004axh.1_RNA|KIAA1529_uc011luw.1_Missense_Mutation_p.M236T	NM_020893	NP_065944			hypothetical protein LOC57653											ovary(4)|large_intestine(2)|skin(1)	7		Acute lymphoblastic leukemia(62;0.154)				AGTGTCATCATGCTCAACATG	0.522													19	50					0	0	0.000132079	0	0
HEMGN	55363	broad.mit.edu	37	9	100693459	100693459	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr9:100693459C>T	uc004axy.2	-	3	326	c.218G>A	c.(217-219)CGA>CAA	p.R73Q	HEMGN_uc004axz.2_Missense_Mutation_p.R73Q	NM_197978	NP_932095	Q9BXL5	HEMGN_HUMAN	hemogen	73	Necessary for nuclear localization.				cell differentiation|multicellular organismal development					ovary(1)	1		Acute lymphoblastic leukemia(62;0.0559)				TCTGCCTCTTCGATTTCCTTT	0.413													54	65					0	0	0.000781405	0	0
TGFBR1	7046	broad.mit.edu	37	9	101907069	101907069	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr9:101907069G>A	uc004azc.2	+	6	1105	c.1029G>A	c.(1027-1029)AAG>AAA	p.K343K	TGFBR1_uc004azd.2_Silent_p.K266K|TGFBR1_uc011lvc.1_Silent_p.K274K	NM_004612	NP_004603	P36897	TGFR1_HUMAN	transforming growth factor, beta receptor I	343	Protein kinase.|Cytoplasmic (Potential).				activation of MAPKK activity|anterior/posterior pattern formation|artery morphogenesis|collagen fibril organization|embryonic cranial skeleton morphogenesis|germ cell migration|heart development|kidney development|neuron fate commitment|palate development|parathyroid gland development|pathway-restricted SMAD protein phosphorylation|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|pharyngeal system development|positive regulation of cell growth|positive regulation of cell proliferation|positive regulation of cellular component movement|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of SMAD protein import into nucleus|positive regulation of survival gene product expression|positive regulation of transcription, DNA-dependent|response to cholesterol|thymus development|transforming growth factor beta receptor signaling pathway		ATP binding|I-SMAD binding|metal ion binding|transforming growth factor beta binding|transforming growth factor beta receptor activity, type I|type II transforming growth factor beta receptor binding			lung(2)|ovary(1)	3		Acute lymphoblastic leukemia(62;0.0559)				TGGTAAAGAAGAATGGAACTT	0.368													19	41					0	0	0.000132079	0	0
BAAT	570	broad.mit.edu	37	9	104124732	104124732	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr9:104124732G>A	uc010mtd.2	-	4	1344	c.1235C>T	c.(1234-1236)CCA>CTA	p.P412L	BAAT_uc004bbd.3_Missense_Mutation_p.P412L	NM_001127610	NP_001121082	Q14032	BAAT_HUMAN	bile acid Coenzyme A: amino acid	412					acyl-CoA metabolic process|bile acid and bile salt transport|bile acid biosynthetic process|digestion|fatty acid metabolic process|glycine metabolic process	cytosol|peroxisomal matrix	carboxylesterase activity|glycine N-choloyltransferase activity|N-acyltransferase activity|palmitoyl-CoA hydrolase activity			ovary(1)|lung(1)|skin(1)	3		Acute lymphoblastic leukemia(62;0.0559)			Glycine(DB00145)	GGTCACATCTGGAATGAGGTG	0.458													11	36					0	0	0.000151284	0	0
OR13F1	138805	broad.mit.edu	37	9	107267237	107267237	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr9:107267237G>A	uc011lvm.1	+	1	694	c.694G>A	c.(694-696)GAA>AAA	p.E232K		NM_001004485	NP_001004485	Q8NGS4	O13F1_HUMAN	olfactory receptor, family 13, subfamily F,	232	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)|skin(1)	3						CAGCTCAGTGGAAGGTCGAAG	0.493													30	92					0	0	0.00058488	0	0
OR13C8	138802	broad.mit.edu	37	9	107331487	107331487	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr9:107331487C>T	uc011lvo.1	+	1	39	c.39C>T	c.(37-39)TTC>TTT	p.F13F		NM_001004483	NP_001004483	Q8NGS7	O13C8_HUMAN	olfactory receptor, family 13, subfamily C,	13	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						CAGAATTTTTCCTGGTAGGGC	0.413													24	86					0	0	0.000586117	0	0
OR13C2	392376	broad.mit.edu	37	9	107367329	107367329	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr9:107367329C>T	uc011lvq.1	-	1	580	c.580G>A	c.(580-582)GAC>AAC	p.D194N		NM_001004481	NP_001004481	Q8NGS9	O13C2_HUMAN	olfactory receptor, family 13, subfamily C,	194	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						AACTCATTGTCTGAGATGTCA	0.388													12	57					0	0	0.000219431	0	0
OR13C2	392376	broad.mit.edu	37	9	107367383	107367383	+	Missense_Mutation	SNP	G	A	A	rs149514294		TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr9:107367383G>A	uc011lvq.1	-	1	526	c.526C>T	c.(526-528)CAT>TAT	p.H176Y		NM_001004481	NP_001004481	Q8NGS9	O13C2_HUMAN	olfactory receptor, family 13, subfamily C,	176	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.H176Y(1)		skin(1)	1						CAGGTGAAATGATTGATGATG	0.443													15	51					0	0	0.000958276	0	0
SVEP1	79987	broad.mit.edu	37	9	113205880	113205880	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr9:113205880G>A	uc010mtz.2	-	27	4921	c.4584C>T	c.(4582-4584)ATC>ATT	p.I1528I	SVEP1_uc010mua.1_Silent_p.I1528I	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	1528	Pentaxin.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						ATTTCCCATCGATATAGACTT	0.438													13	21					0	0	0.000219431	0	0
C9orf84	158401	broad.mit.edu	37	9	114449059	114449059	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr9:114449059C>T	uc004bfr.2	-	26	4461	c.4326G>A	c.(4324-4326)AGG>AGA	p.R1442R	C9orf84_uc011lwt.1_RNA|C9orf84_uc004bfq.2_Silent_p.R1403R|C9orf84_uc010mug.2_Silent_p.R1353R	NM_173521	NP_775792	Q5VXU9	CI084_HUMAN	hypothetical protein LOC158401 isoform 1	1442										ovary(2)	2						TTCAAAAAAACCTCAGCCGAG	0.388													20	79					0	0	0.000375601	0	0
C9orf84	158401	broad.mit.edu	37	9	114454514	114454514	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr9:114454514G>A	uc004bfr.2	-	25	3686	c.3551C>T	c.(3550-3552)TCA>TTA	p.S1184L	C9orf84_uc011lwt.1_RNA|C9orf84_uc004bfq.2_Missense_Mutation_p.S1145L|C9orf84_uc010mug.2_Missense_Mutation_p.S1095L	NM_173521	NP_775792	Q5VXU9	CI084_HUMAN	hypothetical protein LOC158401 isoform 1	1184										ovary(2)	2						CTGATTGTATGAAGTCACAGG	0.373													9	59					0	0	6.40141e-05	0	0
ZNF618	114991	broad.mit.edu	37	9	116811415	116811415	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr9:116811415C>T	uc004bid.2	+	15	1932	c.1833C>T	c.(1831-1833)ATC>ATT	p.I611I	ZNF618_uc004bic.2_Silent_p.I518I|ZNF618_uc011lxi.1_Silent_p.I578I|ZNF618_uc011lxj.1_Silent_p.I579I|ZNF618_uc010mvb.2_Silent_p.I201I	NM_133374	NP_588615	Q5T7W0	ZN618_HUMAN	zinc finger protein 618	611					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TGTCGGAGATCAGGACAGTGT	0.607													24	70					0	0	0.000227799	0	0
ZNF618	114991	broad.mit.edu	37	9	116812003	116812003	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr9:116812003C>T	uc004bid.2	+	15	2520	c.2421C>T	c.(2419-2421)ATC>ATT	p.I807I	ZNF618_uc004bic.2_Silent_p.I714I|ZNF618_uc011lxi.1_Silent_p.I774I|ZNF618_uc011lxj.1_Silent_p.I775I|ZNF618_uc010mvb.2_Silent_p.I397I	NM_133374	NP_588615	Q5T7W0	ZN618_HUMAN	zinc finger protein 618	807					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TGGCCATGATCCTGGACCCGC	0.617													10	35					0	0	0.000673444	0	0
PAPPA	5069	broad.mit.edu	37	9	119094741	119094741	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr9:119094741G>A	uc004bjn.2	+	12	3772	c.3391G>A	c.(3391-3393)GAT>AAT	p.D1131N	PAPPA_uc011lxp.1_Missense_Mutation_p.D826N|PAPPA_uc011lxq.1_Missense_Mutation_p.D506N	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	1131					cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						TCAGAGCCACGATCTAGGTAA	0.493													7	42					0	0	0.000442599	0	0
ASTN2	23245	broad.mit.edu	37	9	119567924	119567924	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr9:119567924G>A	uc004bjs.1	-	13	2484	c.2383C>T	c.(2383-2385)CAG>TAG	p.Q795*	ASTN2_uc004bjr.1_Nonsense_Mutation_p.Q791*|ASTN2_uc004bjt.1_Nonsense_Mutation_p.Q744*	NM_198187	NP_937830	O75129	ASTN2_HUMAN	astrotactin 2 isoform c	795	Extracellular (Potential).					integral to membrane				skin(4)|ovary(3)|breast(1)|kidney(1)	9						AAGGTCATCTGGAAGACTTGG	0.488													17	53					0	0	0.000958276	0	0
C5	727	broad.mit.edu	37	9	123742403	123742403	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr9:123742403G>A	uc004bkv.2	-	28	3646	c.3616C>T	c.(3616-3618)CGT>TGT	p.R1206C		NM_001735	NP_001726	P01031	CO5_HUMAN	complement component 5 preproprotein	1206					activation of MAPK activity|chemotaxis|complement activation, alternative pathway|complement activation, classical pathway|cytolysis|G-protein coupled receptor protein signaling pathway|inflammatory response|negative regulation of macrophage chemotaxis|positive regulation of chemokine secretion|positive regulation vascular endothelial growth factor production	extracellular space|membrane attack complex	chemokine activity|endopeptidase inhibitor activity			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(323;4.98e-53)|GBM - Glioblastoma multiforme(294;0.0242)	Eculizumab(DB01257)	ACAATTGAACGAAACTGTGGG	0.333													16	74					0	0	0.000229342	0	0
OR1L8	138881	broad.mit.edu	37	9	125329898	125329898	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr9:125329898G>A	uc004bmp.1	-	1	859	c.859C>T	c.(859-861)CCT>TCT	p.P287S		NM_001004454	NP_001004454	Q8NGR8	OR1L8_HUMAN	olfactory receptor, family 1, subfamily L,	287	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3						TAGATAAAAGGATTGAGCATG	0.458													29	96					0	0	0.000491102	0	0
GOLGA2	2801	broad.mit.edu	37	9	131019386	131019387	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr9:131019386_131019387CG>AT	uc011maw.1	-	26	2981_2982	c.2968_2969CG>AT	c.(2968-2970)CGG>ATG	p.R990M	GOLGA2_uc010mxw.2_Missense_Mutation_p.R313M|GOLGA2_uc004buh.2_Missense_Mutation_p.R340M	NM_004486	NP_004477	Q08379	GOGA2_HUMAN	Golgi autoantigen, golgin subfamily a, 2	990						Golgi cisterna membrane	protein binding			ovary(1)	1						CTCGTCAGCCCGGTAAAAAAAA	0.559													7	115					0	0	6.4e-05	0	0
ODF2	4957	broad.mit.edu	37	9	131262469	131262470	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr9:131262469_131262470GG>TT	uc011mbd.1	+	21	2736_2737	c.2425_2426GG>TT	c.(2425-2427)GGG>TTG	p.G809L	ODF2_uc004bvb.2_Missense_Mutation_p.G785L|ODF2_uc011mbe.1_Missense_Mutation_p.G804L|ODF2_uc004bvc.2_Missense_Mutation_p.G785L|ODF2_uc004bvd.3_Missense_Mutation_p.G809L|ODF2_uc004bvh.2_Missense_Mutation_p.G215L	NM_002540	NP_002531	Q5BJF6	ODFP2_HUMAN	outer dense fiber of sperm tails 2 isoform 1	809					cell differentiation|G2/M transition of mitotic cell cycle|multicellular organismal development|spermatogenesis	centriole|cilium|cytosol|microtubule|spindle pole	protein binding|structural molecule activity			ovary(1)	1						CAACGTGTTTGGGGATGGTCCC	0.574													7	140					0	0	6.4e-05	0	0
SPTAN1	6709	broad.mit.edu	37	9	131344084	131344085	+	Nonsense_Mutation	DNP	GG	TT	TT			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr9:131344084_131344085GG>TT	uc004bvl.3	+	12	1598_1599	c.1485_1486GG>TT	c.(1483-1488)TTGGGA>TTTTGA	p.495_496LG>F*	SPTAN1_uc011mbg.1_Nonsense_Mutation_p.495_496LG>F*|SPTAN1_uc011mbh.1_Nonsense_Mutation_p.507_508LG>F*|SPTAN1_uc004bvm.3_Nonsense_Mutation_p.495_496LG>F*|SPTAN1_uc004bvn.3_Nonsense_Mutation_p.495_496LG>F*	NM_003127	NP_003118	Q13813	SPTA2_HUMAN	spectrin, alpha, non-erythrocytic 1	495_496	Spectrin 6.				actin filament capping|axon guidance|cellular component disassembly involved in apoptosis	cytosol|intracellular membrane-bounded organelle|membrane fraction|microtubule cytoskeleton|spectrin	actin binding|calcium ion binding|calmodulin binding|structural constituent of cytoskeleton			breast(5)|ovary(4)|pancreas(1)	10						ATGAAGACTTGGGAGATTCCTT	0.421													12	393					0	0	6.4e-05	0	0
LRRC8A	56262	broad.mit.edu	37	9	131669672	131669672	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr9:131669672C>T	uc004bwl.3	+	3	483	c.229C>T	c.(229-231)CCG>TCG	p.P77S	LRRC8A_uc010myp.2_Missense_Mutation_p.P77S|LRRC8A_uc010myq.2_Missense_Mutation_p.P77S	NM_019594	NP_062540	Q8IWT6	LRC8A_HUMAN	leucine rich repeat containing 8 family, member	77					pre-B cell differentiation	integral to membrane					0						AGCCCCTGGCCCGGAGCCCAC	0.612													6	29					0	0	8.12818e-05	0	0
PRDM12	59335	broad.mit.edu	37	9	133543670	133543670	+	Silent	SNP	C	T	T	rs145300834	byFrequency	TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr9:133543670C>T	uc004bzt.1	+	3	600	c.540C>T	c.(538-540)ATC>ATT	p.I180I		NM_021619	NP_067632	Q9H4Q4	PRD12_HUMAN	PR domain containing 12	180	SET.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_hematologic(13;0.0433)|Acute lymphoblastic leukemia(5;0.0534)		OV - Ovarian serous cystadenocarcinoma(145;0.000344)		TGGTCCAGATCGGCACCAGCA	0.587													7	50					0	0	0.000274275	0	0
MRPS2	51116	broad.mit.edu	37	9	138393782	138393782	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr9:138393782C>T	uc004cfv.3	+	3	336	c.262C>T	c.(262-264)CGA>TGA	p.R88*	C9orf116_uc004cfs.1_5'Flank|C9orf116_uc004cft.1_5'Flank|C9orf116_uc004cfu.1_5'Flank|MRPS2_uc004cfw.3_5'UTR|MRPS2_uc004cfx.3_5'UTR|MRPS2_uc010nat.2_Nonsense_Mutation_p.R69*	NM_016034	NP_057118	Q9Y399	RT02_HUMAN	mitochondrial ribosomal protein S2	88					translation	mitochondrion|small ribosomal subunit	structural constituent of ribosome				0				OV - Ovarian serous cystadenocarcinoma(145;1.46e-53)|Epithelial(140;2.04e-47)|all cancers(34;1.23e-42)		CTTCGATGCCCGAGTCCATCT	0.552													26	38					0	0	0.000227799	0	0
SEC16A	9919	broad.mit.edu	37	9	139369253	139369253	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr9:139369253G>A	uc004chx.2	-	3	3124	c.2815C>T	c.(2815-2817)CCA>TCA	p.P939S	SEC16A_uc004chv.3_Intron|SEC16A_uc004chw.2_Missense_Mutation_p.P939S|SEC16A_uc010nbn.2_Missense_Mutation_p.P939S|SEC16A_uc010nbo.1_Missense_Mutation_p.P939S	NM_014866	NP_055681	O15027	SC16A_HUMAN	SEC16 homolog A	761					protein transport|vesicle-mediated transport	endoplasmic reticulum membrane|Golgi membrane					0		Myeloproliferative disorder(178;0.0511)		Epithelial(140;2.9e-06)|OV - Ovarian serous cystadenocarcinoma(145;5.88e-06)		TGACTTTCTGGAACCAAGTTC	0.483													26	70					0	0	0.000692331	0	0
SEC16A	9919	broad.mit.edu	37	9	139371752	139371752	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr9:139371752G>A	uc004chx.2	-	3	625	c.316C>T	c.(316-318)CCC>TCC	p.P106S	SEC16A_uc004chv.3_5'Flank|SEC16A_uc004chw.2_Missense_Mutation_p.P106S|SEC16A_uc010nbn.2_Missense_Mutation_p.P106S|SEC16A_uc010nbo.1_Missense_Mutation_p.P106S	NM_014866	NP_055681	O15027	SC16A_HUMAN	SEC16 homolog A	2070	Required for interaction with SEC23A.|Pro-rich.				protein transport|vesicle-mediated transport	endoplasmic reticulum membrane|Golgi membrane					0		Myeloproliferative disorder(178;0.0511)		Epithelial(140;2.9e-06)|OV - Ovarian serous cystadenocarcinoma(145;5.88e-06)		GGCTCACAGGGTCCCTGAGAG	0.587													27	51					0	0	0.000184323	0	0
FAM69B	138311	broad.mit.edu	37	9	139616675	139616675	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr9:139616675G>A	uc004cik.2	+	4	499	c.405G>A	c.(403-405)CGG>CGA	p.R135R	FAM69B_uc004cil.2_Silent_p.R48R|SNHG7_uc004cim.2_RNA	NM_152421	NP_689634	Q5VUD6	FA69B_HUMAN	hypothetical protein LOC138311	135	Lumenal (Potential).					endoplasmic reticulum membrane|integral to membrane					0	all_cancers(76;0.0882)|all_epithelial(76;0.228)	Myeloproliferative disorder(178;0.0821)		OV - Ovarian serous cystadenocarcinoma(145;1.03e-05)|Epithelial(140;0.00013)		CCCCCCGGCGGGAGCTGGTAC	0.627													5	15					0	0	3.59834e-05	0	0
ASMT	438	broad.mit.edu	37	X	1746618	1746618	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chrX:1746618G>A	uc004cqd.2	+	5	542	c.397G>A	c.(397-399)GAG>AAG	p.E133K	ASMT_uc010ncy.2_Missense_Mutation_p.E133K|ASMT_uc004cqe.2_Missense_Mutation_p.E133K	NM_004043	NP_004034	P46597	HIOM_HUMAN	acetylserotonin O-methyltransferase	133					melatonin biosynthetic process|translation	cytosol	acetylserotonin O-methyltransferase activity|S-methyltransferase activity			skin(1)	1		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				CCAGTACCTGGAGACGTTTGG	0.313													55	168					0	0	0.000781405	0	0
FRMPD4	9758	broad.mit.edu	37	X	12736333	12736333	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chrX:12736333G>A	uc004cuz.1	+	16	3894	c.3388G>A	c.(3388-3390)GAA>AAA	p.E1130K	FRMPD4_uc011mij.1_Missense_Mutation_p.E1122K	NM_014728	NP_055543	Q14CM0	FRPD4_HUMAN	FERM and PDZ domain containing 4	1130					positive regulation of synapse structural plasticity	cytoskeleton|dendritic spine	phosphatidylinositol-4,5-bisphosphate binding|protein binding			central_nervous_system(5)|ovary(3)|skin(2)|large_intestine(1)|lung(1)|pancreas(1)	13						CGAAGGGAAGGAAGAAGGAGC	0.517													73	48					0	0	0.000781405	0	0
CXorf23	256643	broad.mit.edu	37	X	19948046	19948046	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chrX:19948046C>T	uc004czp.2	-	10	1876	c.1876G>A	c.(1876-1878)GGT>AGT	p.G626S	CXorf23_uc010nfn.2_RNA|CXorf23_uc011mjg.1_Intron|CXorf23_uc004czo.2_Missense_Mutation_p.G605S	NM_198279	NP_938020	A2AJT9	CX023_HUMAN	hypothetical protein LOC256643	655						mitochondrion				lung(1)|skin(1)	2						CATCTGCCACCTCTAAAGTTG	0.398													43	59					0	0	0.000781405	0	0
MAGEB1	4112	broad.mit.edu	37	X	30268784	30268784	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chrX:30268784C>T	uc004dcc.2	+	4	494	c.174C>T	c.(172-174)CCC>CCT	p.P58P	MAGEB1_uc004dcd.2_Silent_p.P58P|MAGEB1_uc004dce.2_Silent_p.P58P	NM_002363	NP_002354	P43366	MAGB1_HUMAN	melanoma antigen family B, 1	58											0						CTGGCATTCCCCAGAAGCCTC	0.567													5	4					0	0	0.000602214	0	0
FAM47C	442444	broad.mit.edu	37	X	37027219	37027219	+	Missense_Mutation	SNP	C	T	T	rs148119466	byFrequency	TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chrX:37027219C>T	uc004ddl.1	+	1	750	c.736C>T	c.(736-738)CTC>TTC	p.L246F		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	246										ovary(3)	3						AGTGTCCCATCTCCGCCCAGA	0.627													18	5					0	0	0.000132079	0	0
CXorf36	79742	broad.mit.edu	37	X	45013293	45013293	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chrX:45013293G>A	uc004dgg.2	-	4	898	c.823C>T	c.(823-825)CTG>TTG	p.L275L		NM_176819	NP_789789	Q9H7Y0	CX036_HUMAN	hypothetical protein LOC79742 isoform 1	275						extracellular region				lung(1)	1						AAAGACTCCAGGACACCCAGG	0.532													26	23					0	0	0.000409698	0	0
SSX3	10214	broad.mit.edu	37	X	48213512	48213512	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chrX:48213512G>A	uc004djd.1	-	4	296	c.202C>T	c.(202-204)CCA>TCA	p.P68S	SSX3_uc004dje.2_Missense_Mutation_p.P68S|SSX3_uc010nic.2_Missense_Mutation_p.P68S	NM_021014	NP_066294	Q99909	SSX3_HUMAN	synovial sarcoma, X breakpoint 3 isoform a	68	KRAB-related.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding				0						ATGAAAGATGGGAGGATGGCC	0.363													17	29					0	0	0.000958276	0	0
DGKK	139189	broad.mit.edu	37	X	50147080	50147080	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chrX:50147080G>A	uc010njr.1	-	5	1105	c.1045C>T	c.(1045-1047)CCT>TCT	p.P349S		NM_001013742	NP_001013764	Q5KSL6	DGKK_HUMAN	diacylglycerol kinase kappa	349	Phorbol-ester/DAG-type 1.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|diacylglycerol metabolic process|intracellular signal transduction|platelet activation|response to oxidative stress	cytoplasm|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(1)|kidney(1)	2	Ovarian(276;0.236)					GATAAGGCAGGAATGCTCTCT	0.463													6	15					0	0	8.12818e-05	0	0
BMP15	9210	broad.mit.edu	37	X	50659363	50659363	+	Missense_Mutation	SNP	C	G	G			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chrX:50659363C>G	uc011mnw.1	+	2	935	c.935C>G	c.(934-936)CCC>CGC	p.P312R		NM_005448	NP_005439	O95972	BMP15_HUMAN	bone morphogenetic protein 15 precursor	312					female gamete generation|granulosa cell development|ovarian follicle development	extracellular space	cytokine activity|growth factor activity			ovary(2)	2	Ovarian(276;0.236)					ATCATTGCTCCCCCTTTCTAC	0.483													13	53					0	0	0.00074312	0	0
PHF8	23133	broad.mit.edu	37	X	54011586	54011586	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chrX:54011586G>A	uc004dsu.2	-	18	2385	c.2312C>T	c.(2311-2313)TCG>TTG	p.S771L	PHF8_uc004dst.2_Missense_Mutation_p.S735L|PHF8_uc004dsv.2_Missense_Mutation_p.S601L|PHF8_uc004dsw.2_Missense_Mutation_p.S634L|PHF8_uc004dsx.2_Missense_Mutation_p.S499L|PHF8_uc004dsy.2_Missense_Mutation_p.S718L	NM_015107	NP_055922	Q9UPP1	PHF8_HUMAN	PHD finger protein 8	771	Ser-rich.				brain development|G1/S transition of mitotic cell cycle|negative regulation of chromatin silencing at rDNA|positive regulation of transcription from RNA polymerase I promoter|transcription, DNA-dependent	nucleolus	chromatin binding|histone demethylase activity (H3-K27 specific)|histone demethylase activity (H3-K36 specific)|histone demethylase activity (H3-K9 specific)|histone demethylase activity (H4-K20 specific)|iron ion binding|methylated histone residue binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|zinc ion binding			ovary(3)	3						CGGTGAGGACGATGAGGACTG	0.612													4	2					0	0	0.000602214	0	0
OTUD6A	139562	broad.mit.edu	37	X	69283074	69283074	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chrX:69283074G>A	uc004dxu.1	+	1	734	c.700G>A	c.(700-702)GAG>AAG	p.E234K		NM_207320	NP_997203	Q7L8S5	OTU6A_HUMAN	OTU domain containing 6A	234	OTU.									lung(1)|skin(1)	2						GACCCCCATCGAGGTGATCCA	0.617													11	6					0	0	6.40141e-05	0	0
AWAT1	158833	broad.mit.edu	37	X	69459652	69459652	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chrX:69459652G>A	uc004dxy.2	+	6	741	c.700G>A	c.(700-702)GAT>AAT	p.D234N		NM_001013579	NP_001013597	Q58HT5	AWAT1_HUMAN	wax synthase 1	234					lipid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	long-chain-alcohol O-fatty-acyltransferase activity			ovary(3)	3						GTTCCATAAGGATAGCAGGAT	0.463													12	40					0	0	0.000308642	0	0
PHKA1	5255	broad.mit.edu	37	X	71877446	71877446	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chrX:71877446G>A	uc004eax.3	-	9	1211	c.910C>T	c.(910-912)CCT>TCT	p.P304S	PHKA1_uc004eay.3_Missense_Mutation_p.P304S|PHKA1_uc011mqi.1_Missense_Mutation_p.P304S	NM_002637	NP_002628	P46020	KPB1_HUMAN	phosphorylase kinase, alpha 1 (muscle) isoform	304					glucose metabolic process|glycogen catabolic process	cytosol|plasma membrane	calmodulin binding|glucan 1,4-alpha-glucosidase activity|phosphorylase kinase activity			ovary(3)|skin(1)	4	Renal(35;0.156)					ACCTCTTTAGGAGTTTTATAT	0.418													5	21					0	0	3.59834e-05	0	0
NAP1L2	4674	broad.mit.edu	37	X	72434151	72434151	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chrX:72434151C>T	uc004ebi.2	-	1	534	c.178G>A	c.(178-180)GAA>AAA	p.E60K	NAP1L2_uc011mqj.1_Intron	NM_021963	NP_068798	Q9ULW6	NP1L2_HUMAN	nucleosome assembly protein 1-like 2	60					nucleosome assembly	chromatin assembly complex				lung(1)	1	Renal(35;0.156)					TCACCGTTTTCCCCTTCTTCC	0.582													20	17					0	0	0.000175454	0	0
XIST	7503	broad.mit.edu	37	X	73063860	73063860	+	RNA	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chrX:73063860G>A	uc004ebm.1	-	1		c.8729C>T				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						GAAGTGATAGGGTTGTGGACA	0.418													6	15					0	0	3.59834e-05	0	0
SLC16A2	6567	broad.mit.edu	37	X	73749050	73749050	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chrX:73749050C>T	uc004ebt.2	+	5	1561	c.1395C>T	c.(1393-1395)GTC>GTT	p.V465V	SLC16A2_uc010nlr.1_Intron	NM_006517	NP_006508	P36021	MOT8_HUMAN	solute carrier family 16, member 2	391	Helical; (Potential).					integral to plasma membrane|membrane fraction	monocarboxylic acid transmembrane transporter activity|symporter activity			breast(2)|ovary(1)	3					Pyruvic acid(DB00119)	TTCTCCAGGTCCTTTCCTTCC	0.458													5	5					0	0	0.000602214	0	0
ZNF711	7552	broad.mit.edu	37	X	84526058	84526058	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chrX:84526058C>T	uc004eeo.2	+	9	1857	c.1510C>T	c.(1510-1512)CCT>TCT	p.P504S	ZNF711_uc004eep.2_Missense_Mutation_p.P504S|ZNF711_uc004eeq.2_Missense_Mutation_p.P550S|ZNF711_uc011mqy.1_Missense_Mutation_p.P103S	NM_021998	NP_068838	Q9Y462	ZN711_HUMAN	zinc finger protein 711	504					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding|sequence-specific DNA binding|zinc ion binding			ovary(3)|skin(1)	4						CAAGAATTTTCCTCATGTTTG	0.433													6	1					0	0	8.12818e-05	0	0
TDGF3	6998	broad.mit.edu	37	X	109764350	109764350	+	RNA	SNP	T	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chrX:109764350T>A	uc004eos.1	+	1		c.811T>A				NR_002718				Human (clone CR-3) teratocarcinoma-derived growth factor 3 (TDGF3) mRNA, complete cds.												0						CCCTAATTGTTAAAAGCTATG	0.433													11	36					0	0	0.000219431	0	0
PAK3	5063	broad.mit.edu	37	X	110406200	110406200	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chrX:110406200G>A	uc004epa.2	+	6	598	c.571G>A	c.(571-573)GAA>AAA	p.E191K	PAK3_uc010npt.1_Missense_Mutation_p.E176K|PAK3_uc010npu.1_Missense_Mutation_p.E176K|PAK3_uc004eoy.1_5'UTR|PAK3_uc004eoz.2_Missense_Mutation_p.E176K|PAK3_uc011mst.1_RNA|PAK3_uc010npv.1_Missense_Mutation_p.E212K|PAK3_uc010npw.1_Missense_Mutation_p.E197K	NM_001128173	NP_001121645	O75914	PAK3_HUMAN	p21-activated kinase 3 isoform d	191	Linker.				multicellular organismal development		ATP binding|metal ion binding|protein serine/threonine kinase activity|SH3 domain binding			lung(6)|ovary(3)|large_intestine(1)	10						agaagaagatgaagaggaaga	0.338										TSP Lung(19;0.15)			20	30					0	0	0.000132079	0	0
DCX	1641	broad.mit.edu	37	X	110653511	110653511	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chrX:110653511C>T	uc004epd.2	-	2	531	c.359G>A	c.(358-360)CGA>CAA	p.R120Q	DCX_uc011msv.1_Missense_Mutation_p.R120Q|DCX_uc004epe.2_Missense_Mutation_p.R39Q|DCX_uc004epf.2_Missense_Mutation_p.R39Q|DCX_uc004epg.2_Missense_Mutation_p.R39Q	NM_000555	NP_000546	O43602	DCX_HUMAN	doublecortin isoform a	120					axon guidance|central nervous system development|intracellular signal transduction	cytosol|microtubule associated complex	microtubule binding			central_nervous_system(2)|lung(1)|skin(1)	4						GGTTCTGGTTCGGTAGAAGCT	0.527													12	10					0	0	0.00010058	0	0
HTR2C	3358	broad.mit.edu	37	X	114141205	114141205	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chrX:114141205G>A	uc004epu.1	+	6	1332	c.604G>A	c.(604-606)GTG>ATG	p.V202M	HTR2C_uc010nqc.1_Missense_Mutation_p.V202M|HTR2C_uc004epv.1_Missense_Mutation_p.R170H	NM_000868	NP_000859	P28335	5HT2C_HUMAN	5-hydroxytryptamine (serotonin) receptor 2C	202	Extracellular (By similarity).				cGMP biosynthetic process|ERK1 and ERK2 cascade|feeding behavior|phosphatidylinositol biosynthetic process|release of sequestered calcium ion into cytosol|response to drug|synaptic transmission	cytoplasm|integral to membrane|nucleus|plasma membrane	1-(4-iodo-2,5-dimethoxyphenyl)propan-2-amine binding|drug binding|phosphatidylinositol phospholipase C activity|protein binding|serotonin binding|serotonin receptor activity			ovary(3)	3					Chlorprothixene(DB01239)|Clozapine(DB00363)|Dexfenfluramine(DB01191)|Fenfluramine(DB00574)|Methysergide(DB00247)|Mianserin(DB06148)|Minaprine(DB00805)|Mirtazapine(DB00370)|Olanzapine(DB00334)|Promazine(DB00420)|Propiomazine(DB00777)|Quetiapine(DB01224)|Sertindole(DB06144)|Thiethylperazine(DB00372)|Tramadol(DB00193)|Ziprasidone(DB00246)	AAAGGTGTTCGTGAACAACAC	0.448													18	31					0	0	0.000132079	0	0
KLHL13	90293	broad.mit.edu	37	X	117053616	117053616	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chrX:117053616C>T	uc004eql.2	-	4	500	c.438G>A	c.(436-438)AGG>AGA	p.R146R	KLHL13_uc004eqk.2_Silent_p.R95R|KLHL13_uc011mtn.1_Intron|KLHL13_uc011mto.1_Silent_p.R140R|KLHL13_uc011mtp.1_Silent_p.R148R|KLHL13_uc004eqm.2_Silent_p.R95R|KLHL13_uc011mtq.1_Silent_p.R130R	NM_033495	NP_277030	Q9P2N7	KLH13_HUMAN	kelch-like 13	146	BTB.				cytokinesis|mitosis|protein ubiquitination	Cul3-RING ubiquitin ligase complex				kidney(1)|skin(1)	2						CAATAATTTTCCTTAGACCGA	0.353													51	27					0	0	0.000781405	0	0
THOC2	57187	broad.mit.edu	37	X	122756656	122756656	+	Silent	SNP	A	G	G			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chrX:122756656A>G	uc004etu.2	-	30	3770	c.3738T>C	c.(3736-3738)AGT>AGC	p.S1246S	THOC2_uc010nqt.1_5'Flank|THOC2_uc004etw.1_Silent_p.S67S	NM_001081550	NP_001075019	Q8NI27	THOC2_HUMAN	THO complex 2	1246					intronless viral mRNA export from host nucleus|mRNA processing|RNA splicing	THO complex part of transcription export complex	protein binding|RNA binding			ovary(3)	3						TAGGTGTGGTACTAGAAGCTT	0.338													3	22					0	0	6.4e-05	0	0
ODZ1	10178	broad.mit.edu	37	X	123525962	123525962	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chrX:123525962C>T	uc004euj.2	-	27	5671	c.5607G>A	c.(5605-5607)GGG>GGA	p.G1869G	ODZ1_uc011muj.1_Silent_p.G1875G|ODZ1_uc010nqy.2_Silent_p.G1876G	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	1869	Extracellular (Potential).|YD 7.				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						AAATAATTTTCCCACTCTGGT	0.363													6	35					0	0	8.12818e-05	0	0
ODZ1	10178	broad.mit.edu	37	X	123775834	123775834	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chrX:123775834G>A	uc004euj.2	-	11	1948	c.1884C>T	c.(1882-1884)TGC>TGT	p.C628C	ODZ1_uc011muj.1_Silent_p.C627C|ODZ1_uc010nqy.2_Silent_p.C628C	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	628	EGF-like 4.|Extracellular (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						TTGGGTCTAGGCAGTCCTCTG	0.453													25	42					0	0	0.000720815	0	0
ACTRT1	139741	broad.mit.edu	37	X	127185936	127185936	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chrX:127185936C>T	uc004eum.2	-	1	447	c.250G>A	c.(250-252)GAC>AAC	p.D84N		NM_138289	NP_612146	Q8TDG2	ACTT1_HUMAN	actin-related protein T1	84						cytoplasm|cytoskeleton				ovary(2)|central_nervous_system(2)|skin(1)	5						TTCTCCATGTCATCCCATCCT	0.493													33	23					0	0	0.000191422	0	0
IGSF1	3547	broad.mit.edu	37	X	130408581	130408581	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chrX:130408581C>T	uc004ewd.2	-	18	3981	c.3743G>A	c.(3742-3744)GGG>GAG	p.G1248E	IGSF1_uc004ewe.3_Missense_Mutation_p.G1242E|IGSF1_uc004ewf.2_Missense_Mutation_p.G1228E	NM_001555	NP_001546	Q8N6C5	IGSF1_HUMAN	immunoglobulin superfamily, member 1 isoform 1	1248	Extracellular (Potential).				regulation of transcription, DNA-dependent	extracellular region|integral to membrane	inhibin beta-A binding|inhibin beta-B binding			ovary(3)|lung(1)|central_nervous_system(1)	5						ACCTGCTGCCCCCACCAGCTC	0.547													13	22					0	0	0.00010058	0	0
OR13H1	347468	broad.mit.edu	37	X	130678899	130678899	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chrX:130678899G>A	uc011muw.1	+	1	852	c.852G>A	c.(850-852)TTG>TTA	p.L284L	IGSF1_uc004ewf.2_Intron	NM_001004486	NP_001004486	Q8NG92	O13H1_HUMAN	olfactory receptor, family 13, subfamily H,	284	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Acute lymphoblastic leukemia(192;0.000636)					CACCCATGTTGAACCCCCTGA	0.408													11	15					0	0	0.00010058	0	0
FRMD7	90167	broad.mit.edu	37	X	131228143	131228143	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chrX:131228143C>T	uc004ewn.2	-	5	487	c.309G>A	c.(307-309)AAG>AAA	p.K103K	FRMD7_uc011muy.1_Silent_p.K88K	NM_194277	NP_919253	Q6ZUT3	FRMD7_HUMAN	FERM domain containing 7	103	FERM.				regulation of neuron projection development	cytoskeleton|growth cone|neuronal cell body	binding			skin(1)	1	Acute lymphoblastic leukemia(192;0.000127)					CCAAATCCTTCTTTATTTGAA	0.388													16	49					0	0	0.00074312	0	0
GPR112	139378	broad.mit.edu	37	X	135480047	135480047	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chrX:135480047C>T	uc004ezu.1	+	20	8483	c.8192C>T	c.(8191-8193)TCC>TTC	p.S2731F	GPR112_uc010nsb.1_Missense_Mutation_p.S2526F	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	2731	GPS.|Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					TAGGATTTATCCAGGTCTACA	0.418													22	45					0	0	0.000586117	0	0
MAGEC2	51438	broad.mit.edu	37	X	141291305	141291305	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chrX:141291305C>T	uc004fbu.1	-	3	817	c.469G>A	c.(469-471)GAA>AAA	p.E157K		NM_016249	NP_057333	Q9UBF1	MAGC2_HUMAN	melanoma antigen family C, 2	157	MAGE.					cytoplasm|nucleus				breast(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)					TCCTCTGCTTCGTATTTGAGG	0.478										HNSCC(46;0.14)			42	76					0	0	0.000437636	0	0
SLITRK4	139065	broad.mit.edu	37	X	142717102	142717102	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chrX:142717102C>T	uc004fbx.2	-	2	2199	c.1823G>A	c.(1822-1824)CGA>CAA	p.R608Q	SLITRK4_uc004fby.2_Missense_Mutation_p.R608Q	NM_173078	NP_775101	Q8IW52	SLIK4_HUMAN	slit and trk like 4 protein precursor	608	Extracellular (Potential).					integral to membrane				upper_aerodigestive_tract(1)|large_intestine(1)	2	Acute lymphoblastic leukemia(192;6.56e-05)					AGGAGGACTTCGAATGGGACC	0.418													16	22					0	0	0.000308642	0	0
GPR50	9248	broad.mit.edu	37	X	150348464	150348464	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chrX:150348464G>A	uc010ntg.1	+	2	544	c.409G>A	c.(409-411)GAA>AAA	p.E137K	uc004fes.1_5'Flank|GPR50_uc011myc.1_Missense_Mutation_p.E137K	NM_004224	NP_004215	Q13585	MTR1L_HUMAN	G protein-coupled receptor 50	137	Cytoplasmic (Potential).				cell-cell signaling	integral to plasma membrane	melatonin receptor activity			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					CCTCCAGTACGAACGGATCTT	0.542													28	14					0	0	0.000147802	0	0
MAGEA6	4105	broad.mit.edu	37	X	151870060	151870060	+	Silent	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chrX:151870060C>T	uc004ffq.1	+	3	944	c.750C>T	c.(748-750)TTC>TTT	p.F250F	MAGEA6_uc004ffr.1_Silent_p.F250F|MAGEA2_uc010nto.2_Intron	NM_005363	NP_005354	P43360	MAGA6_HUMAN	melanoma antigen family A, 6	250	MAGE.						protein binding				0	Acute lymphoblastic leukemia(192;6.56e-05)					CCCAATATTTCGTGCAGGAAA	0.537													24	39					0	0	0.000295444	0	0
L1CAM	3897	broad.mit.edu	37	X	153133825	153133825	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chrX:153133825G>A	uc004fjb.2	-	13	1743	c.1635C>T	c.(1633-1635)CCC>CCT	p.P545P	L1CAM_uc004fjc.2_Silent_p.P545P|L1CAM_uc010nuo.2_Silent_p.P540P|L1CAM_uc004fjd.1_Silent_p.P359P	NM_000425	NP_000416	P32004	L1CAM_HUMAN	L1 cell adhesion molecule isoform 1 precursor	545	Ig-like C2-type 6.|Extracellular (Potential).				axon guidance|blood coagulation|cell death|leukocyte migration	integral to membrane				ovary(8)|central_nervous_system(1)	9	all_cancers(53;6.72e-15)|all_epithelial(53;3.19e-09)|all_lung(58;3.39e-06)|all_hematologic(71;4.25e-06)|Lung NSC(58;4.7e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					GCTGCAAGGAGGGGTCAAAGG	0.597													24	38					0	0	0.000227799	0	0
AVPR2	554	broad.mit.edu	37	X	153171107	153171107	+	Silent	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chrX:153171107G>A	uc004fjh.3	+	2	218	c.147G>A	c.(145-147)GTG>GTA	p.V49V	AVPR2_uc004fjg.3_Intron|AVPR2_uc004fji.2_Silent_p.V49V	NM_000054	NP_000045	P30518	V2R_HUMAN	arginine vasopressin receptor 2 isoform 1	49	Helical; Name=1; (Potential).				activation of adenylate cyclase activity|excretion|G-protein signaling, coupled to cAMP nucleotide second messenger|hemostasis|positive regulation of gene expression|transmembrane transport|water transport	endoplasmic reticulum|endosome|Golgi apparatus|integral to plasma membrane	vasopressin receptor activity			breast(1)	1	all_cancers(53;6.72e-15)|all_epithelial(53;3.19e-09)|all_lung(58;3.39e-06)|all_hematologic(71;4.25e-06)|Lung NSC(58;4.7e-06)|Acute lymphoblastic leukemia(192;6.56e-05)				Conivaptan(DB00872)|Terlipressin(DB02638)|Vasopressin(DB00067)	TAGTCTTTGTGGCTGTGGCCC	0.692													5	9					0	0	3.59834e-05	0	0
TKTL1	8277	broad.mit.edu	37	X	153555954	153555954	+	Silent	SNP	C	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chrX:153555954C>A	uc004fkg.2	+	11	1605	c.1419C>A	c.(1417-1419)GTC>GTA	p.V473V	TKTL1_uc011mzl.1_Silent_p.V467V|TKTL1_uc011mzm.1_Silent_p.V269V|TKTL1_uc004fkh.2_Silent_p.V417V	NM_012253	NP_036385	P51854	TKTL1_HUMAN	transketolase-like 1 isoform a	473					glucose catabolic process|thiamine metabolic process	cytoplasm|nucleus	metal ion binding|transketolase activity			ovary(3)|skin(1)	4	all_cancers(53;5.05e-16)|all_epithelial(53;1.82e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					GCCACTGTGTCAGTGACAAGG	0.483													17	63					6.94344e-10	8.7063e-09	0.00074312	1	0
TKTL1	8277	broad.mit.edu	37	X	153555960	153555960	+	Missense_Mutation	SNP	C	G	G			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chrX:153555960C>G	uc004fkg.2	+	11	1611	c.1425C>G	c.(1423-1425)GAC>GAG	p.D475E	TKTL1_uc011mzl.1_Missense_Mutation_p.D469E|TKTL1_uc011mzm.1_Missense_Mutation_p.D271E|TKTL1_uc004fkh.2_Missense_Mutation_p.D419E	NM_012253	NP_036385	P51854	TKTL1_HUMAN	transketolase-like 1 isoform a	475					glucose catabolic process|thiamine metabolic process	cytoplasm|nucleus	metal ion binding|transketolase activity			ovary(3)|skin(1)	4	all_cancers(53;5.05e-16)|all_epithelial(53;1.82e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					GTGTCAGTGACAAGGTCACAG	0.463													20	60					0	0	0.000295444	0	0
SPRY3	10251	broad.mit.edu	37	X	155003856	155003856	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chrX:155003856C>T	uc004fnq.1	+	2	777	c.323C>T	c.(322-324)TCA>TTA	p.S108L	SPRY3_uc010nvl.1_Intron	NM_005840	NP_005831	O43610	SPY3_HUMAN	sprouty homolog 3	108					multicellular organismal development|regulation of signal transduction	cytoplasm|membrane					0	all_cancers(53;1.86e-17)|all_epithelial(53;2.71e-11)|all_lung(58;1.84e-07)|Lung NSC(58;5.62e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					CCCTCACCTTCAGGCCAATCC	0.552													19	43					0	0	0.000175454	0	0
DDX3Y	8653	broad.mit.edu	37	Y	15028247	15028247	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chrY:15028247G>A	uc004fsu.1	+	14	1693	c.1384G>A	c.(1384-1386)GAA>AAA	p.E462K	DDX3Y_uc004fsv.2_Missense_Mutation_p.E462K|DDX3Y_uc010nww.1_Missense_Mutation_p.E278K|DDX3Y_uc011nar.1_Missense_Mutation_p.E459K	NM_001122665	NP_001116137	O15523	DDX3Y_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 3,	462	Helicase C-terminal.					cytoplasm|nucleus	ATP binding|ATP-dependent helicase activity|DNA binding|RNA binding				0						CTTATACCATGAAGGATATGC	0.438													10	17					0	0	0.000673444	0	0
PEX14	5195	broad.mit.edu	37	1	10684419	10684419	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:10684419delC	uc001arn.2	+	7	531	c.510delC	c.(508-510)CTCfs	p.L170fs	PEX14_uc009vmv.2_Frame_Shift_Del_p.L106fs|PEX14_uc010oam.1_Frame_Shift_Del_p.L106fs|PEX14_uc010oan.1_Frame_Shift_Del_p.L127fs|PEX14_uc009vmw.2_Frame_Shift_Del_p.L106fs	NM_004565	NP_004556	O75381	PEX14_HUMAN	peroxisomal biogenesis factor 14	170					negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription, DNA-dependent|protein homooligomerization|protein import into peroxisome matrix|transmembrane transport	integral to membrane|nucleus|peroxisomal membrane|protein complex	protein N-terminus binding|transcription corepressor activity			breast(1)	1	Ovarian(185;0.203)	all_lung(284;6.02e-06)|Lung NSC(185;9.62e-06)|Renal(390;0.000147)|Breast(348;0.000932)|Colorectal(325;0.00215)|Hepatocellular(190;0.00913)|Ovarian(437;0.023)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0292)|Colorectal(212;9.13e-08)|COAD - Colon adenocarcinoma(227;2.07e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000482)|Kidney(185;0.00174)|KIRC - Kidney renal clear cell carcinoma(229;0.00457)|STAD - Stomach adenocarcinoma(132;0.0249)|READ - Rectum adenocarcinoma(331;0.0419)		AGACGACCCTCGCCTCCGTCC	0.622													13	136	---	---	---	---					
ZMPSTE24	10269	broad.mit.edu	37	1	40756542	40756543	+	Frame_Shift_Ins	INS	-	T	T			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:40756542_40756543insT	uc001cfg.2	+	9	1287_1288	c.1076_1077insT	c.(1075-1077)TGTfs	p.C359fs		NM_005857	NP_005848	O75844	FACE1_HUMAN	zinc metallopeptidase STE24	359	Helical; (Potential).					endoplasmic reticulum membrane|Golgi membrane|integral to membrane	metal ion binding|metalloexopeptidase activity				0	Lung NSC(20;4.38e-06)|Ovarian(52;0.00167)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;6.3e-18)			TCTTTCCTGTGTTTTTTTTTAT	0.332													7	148	---	---	---	---					
WDR78	79819	broad.mit.edu	37	1	67292641	67292641	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:67292641delT	uc001dcx.2	-	15	2257	c.2201delA	c.(2200-2202)CAGfs	p.Q734fs	WDR78_uc009waw.2_Frame_Shift_Del_p.Q447fs|WDR78_uc009wax.2_RNA	NM_024763	NP_079039	Q5VTH9	WDR78_HUMAN	WD repeat domain 78 isoform 1	734	WD 4.									ovary(2)	2						GACATTCTCCTGTTGCCATAT	0.373													64	206	---	---	---	---					
KCNN3	3782	broad.mit.edu	37	1	154842331	154842333	+	In_Frame_Del	DEL	TGC	-	-			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr1:154842331_154842333delTGC	uc001ffp.2	-	1	422_424	c.108_110delGCA	c.(106-111)CAGCAA>CAA	p.36_37QQ>Q	KCNN3_uc009wox.1_In_Frame_Del_p.36_37QQ>Q	NM_002249	NP_002240	Q9UGI6	KCNN3_HUMAN	small conductance calcium-activated potassium	36_37	Poly-Gln.					integral to membrane	calmodulin binding			lung(1)	1	all_lung(78;2.29e-27)|all_hematologic(923;0.088)|Hepatocellular(266;0.108)|all_neural(408;0.245)		BRCA - Breast invasive adenocarcinoma(34;0.00819)			ctgctgctgttgctgctgctgct	0.236													3	6	---	---	---	---					
ARID2	196528	broad.mit.edu	37	12	46245553	46245553	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr12:46245553delC	uc001ros.1	+	15	3647	c.3647delC	c.(3646-3648)ACGfs	p.T1216fs	ARID2_uc001ror.2_Frame_Shift_Del_p.T1216fs|ARID2_uc009zkg.1_Frame_Shift_Del_p.T672fs|ARID2_uc009zkh.1_Frame_Shift_Del_p.T843fs|ARID2_uc001rou.1_Frame_Shift_Del_p.T550fs	NM_152641	NP_689854	Q68CP9	ARID2_HUMAN	AT rich interactive domain 2 (ARID, RFX-like)	1216					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(6)|skin(3)|upper_aerodigestive_tract(1)	10	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.106)|all_lung(34;0.22)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.0153)		CCAGTACAAACGCTTCCAGCC	0.483													7	15	---	---	---	---					
PYGL	5836	broad.mit.edu	37	14	51376772	51376773	+	Frame_Shift_Ins	INS	-	C	C	rs113993984		TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr14:51376772_51376773insC	uc001wyu.2	-	17	2144_2145	c.2017_2018insG	c.(2017-2019)GAAfs	p.E673fs	PYGL_uc010tqq.1_Frame_Shift_Ins_p.E639fs|PYGL_uc001wyv.2_Frame_Shift_Ins_p.E347fs|PYGL_uc001wyt.2_5'Flank	NM_002863	NP_002854	P06737	PYGL_HUMAN	liver glycogen phosphorylase isoform 1	673					glucose homeostasis|glucose metabolic process|glycogen catabolic process	cytosol|soluble fraction	AMP binding|ATP binding|bile acid binding|drug binding|glucose binding|glycogen phosphorylase activity|protein homodimerization activity|purine base binding|pyridoxal phosphate binding			skin(1)	1	all_epithelial(31;0.00825)|Breast(41;0.148)				Adenosine monophosphate(DB00131)|Pyridoxal Phosphate(DB00114)|Riboflavin(DB00140)	CCCCGAGGCTTCGGTGCCTGCA	0.475													51	96	---	---	---	---					
POLG	5428	broad.mit.edu	37	15	89870251	89870252	+	In_Frame_Ins	INS	-	CAGGTCCCACTC	CAGGTCCCACTC			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr15:89870251_89870252insCAGGTCCCACTC	uc002bns.3	-	8	1758_1759	c.1476_1477insGAGTGGGACCTG	c.(1474-1479)insGAGTGGGACCTG	p.492_493insEWDL	POLG_uc002bnr.3_In_Frame_Ins_p.492_493insEWDL	NM_002693	NP_002684	P54098	DPOG1_HUMAN	DNA-directed DNA polymerase gamma	492_493					base-excision repair, gap-filling|cell death|DNA-dependent DNA replication	mitochondrial nucleoid	DNA binding|DNA-directed DNA polymerase activity|protease binding			ovary(1)|lung(1)	2	Lung NSC(78;0.0472)|all_lung(78;0.089)		STAD - Stomach adenocarcinoma(125;0.165)			TTAAATTCTTGCAGGTCCCACT	0.584								DNA_polymerases_(catalytic_subunits)					11	221	---	---	---	---					
HOMER3	9454	broad.mit.edu	37	19	19042906	19042906	+	Frame_Shift_Del	DEL	A	-	-			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr19:19042906delA	uc002nku.2	-	6	1222	c.569delT	c.(568-570)TTCfs	p.F190fs	HOMER3_uc002nko.1_Intron|HOMER3_uc002nkp.1_Intron|HOMER3_uc010eby.2_Frame_Shift_Del_p.F154fs|HOMER3_uc010ebz.2_Frame_Shift_Del_p.F190fs|HOMER3_uc002nkw.2_Frame_Shift_Del_p.F190fs|HOMER3_uc002nkv.2_Frame_Shift_Del_p.F190fs	NM_004838	NP_004829	Q9NSC5	HOME3_HUMAN	Homer, neuronal immediate early gene, 3 isoform	190					metabotropic glutamate receptor signaling pathway|protein targeting	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	protein binding				0			Epithelial(12;0.0107)			CTGCAGTGCGAAAAACTCGGC	0.532													2	4	---	---	---	---					
ZFP36L2	678	broad.mit.edu	37	2	43452622	43452623	+	Frame_Shift_Ins	INS	-	C	C			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr2:43452622_43452623insC	uc002rsv.3	-	2	611_612	c.320_321insG	c.(319-321)GGCfs	p.G107fs	LOC100129726_uc010ynx.1_5'Flank	NM_006887	NP_008818	P47974	TISD_HUMAN	zinc finger protein 36, C3H type-like 2	107	Poly-Gly.				cell proliferation	nucleus	DNA binding|RNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Acute lymphoblastic leukemia(82;0.00323)|all_hematologic(82;0.00824)				CTGTGCCGCCGCCCCCCGACGG	0.693													8	8	---	---	---	---					
FN1	2335	broad.mit.edu	37	2	216246963	216246964	+	Frame_Shift_Ins	INS	-	CT	CT			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr2:216246963_216246964insCT	uc002vfa.2	-	32	5401_5402	c.5135_5136insAG	c.(5134-5136)AGTfs	p.S1712fs	FN1_uc002vfb.2_Frame_Shift_Ins_p.S1621fs|FN1_uc002vfc.2_Frame_Shift_Ins_p.S1621fs|FN1_uc002vfd.2_Frame_Shift_Ins_p.S1712fs|FN1_uc002vfe.2_Frame_Shift_Ins_p.S1621fs|FN1_uc002vff.2_Frame_Shift_Ins_p.S1621fs|FN1_uc002vfg.2_Frame_Shift_Ins_p.S1621fs|FN1_uc002vfh.2_Frame_Shift_Ins_p.S1621fs|FN1_uc002vfi.2_Frame_Shift_Ins_p.S1712fs|FN1_uc002vfj.2_Frame_Shift_Ins_p.S1712fs|FN1_uc002vez.2_5'UTR|FN1_uc010zjp.1_Frame_Shift_Ins_p.S339fs|FN1_uc010fvc.1_Frame_Shift_Ins_p.S74fs|FN1_uc010fvd.1_Frame_Shift_Ins_p.S74fs	NM_212482	NP_997647	P02751	FINC_HUMAN	fibronectin 1 isoform 1 preproprotein	1711	Fibronectin type-III 12; extra domain.				acute-phase response|angiogenesis|leukocyte migration|peptide cross-linking|platelet activation|platelet degranulation|regulation of cell shape|substrate adhesion-dependent cell spreading	ER-Golgi intermediate compartment|fibrinogen complex|platelet alpha granule lumen|proteinaceous extracellular matrix	collagen binding|extracellular matrix structural constituent|heparin binding			central_nervous_system(7)|large_intestine(2)|breast(2)|ovary(1)|pancreas(1)	13		Renal(323;0.127)		Epithelial(149;9.59e-07)|all cancers(144;0.000174)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)	Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	CCAGAGGCTGACTCTCTCCGCT	0.455													16	55	---	---	---	---					
RRBP1	6238	broad.mit.edu	37	20	17617376	17617377	+	Splice_Site	INS	-	G	G			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chr20:17617376_17617377insG	uc002wpv.1	-	7	1240	c.886_splice	c.e7-1	p.E296_splice	RRBP1_uc002wpu.2_Splice_Site_p.E70_splice|RRBP1_uc002wpw.1_Splice_Site_p.E296_splice|RRBP1_uc010gcl.1_Splice_Site_p.E70_splice|RRBP1_uc010gcm.1_Splice_Site	NM_001042576	NP_001036041	Q9P2E9	RRBP1_HUMAN	ribosome binding protein 1						protein transport|translation|transmembrane transport	integral to endoplasmic reticulum membrane|ribosome	receptor activity			ovary(1)	1						TGCCATCTCCTGGGGGGAAAGT	0.619													28	68	---	---	---	---					
ANKRD58	347454	broad.mit.edu	37	X	118893300	118893301	+	Frame_Shift_Ins	INS	-	C	C			TCGA-BF-A1Q0-01A-21D-A19A-08	TCGA-BF-A1Q0-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	a8597b25-8541-43e0-b46c-e54e2eaca473	9ae35461-c8d7-4a2e-88b9-8bf14458a975	g.chrX:118893300_118893301insC	uc010nql.2	+	1	725_726	c.670_671insC	c.(670-672)GCCfs	p.A224fs		NM_001105576	NP_001099046	A6NJG2	ANR58_HUMAN	ankyrin repeat domain 58	224											0						CGGCCACCGGGCCTGCCACTAC	0.703													2	4	---	---	---	---					
