Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
WDR47	22911	broad.mit.edu	37	1	109538320	109538321	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr1:109538320_109538321GG>TT	uc001dwj.2	-	8	1948_1949	c.1572_1573CC>AA	c.(1570-1575)CCCCAA>CCAAAA	p.Q525K	WDR47_uc001dwl.2_Missense_Mutation_p.Q533K|WDR47_uc001dwi.2_Missense_Mutation_p.Q526K|WDR47_uc001dwk.2_Missense_Mutation_p.Q497K|WDR47_uc010ovf.1_Missense_Mutation_p.Q452K	NM_001142551	NP_001136023	O94967	WDR47_HUMAN	WD repeat domain 47 isoform 3	525										ovary(1)	1		all_lung(203;0.00519)|all_epithelial(167;0.00611)|Lung NSC(277;0.00822)		Colorectal(144;0.0165)|Lung(183;0.0484)|COAD - Colon adenocarcinoma(174;0.128)|Epithelial(280;0.168)|all cancers(265;0.201)|LUSC - Lung squamous cell carcinoma(189;0.244)		CTAGAGTCTTGGGGTGGTGTAG	0.416000													13	600					0	0	6.4e-05	0	0
KIAA1324	57535	broad.mit.edu	37	1	109707138	109707139	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr1:109707138_109707139GG>TT	uc001dwq.2	+	4	428_429	c.292_293GG>TT	c.(292-294)GGG>TTG	p.G98L	KIAA1324_uc009wex.1_Missense_Mutation_p.G98L|KIAA1324_uc009wey.2_Missense_Mutation_p.G98L|KIAA1324_uc010ovg.1_5'UTR	NM_020775	NP_065826	Q6UXG2	K1324_HUMAN	hypothetical protein LOC57535 precursor	98	Extracellular (Potential).				macroautophagy|positive regulation of vacuole organization|regulation of apoptosis	integral to plasma membrane				ovary(2)|haematopoietic_and_lymphoid_tissue(1)|breast(1)|skin(1)	5		all_epithelial(167;0.000102)|all_lung(203;0.000323)|Lung NSC(277;0.00063)		Colorectal(144;0.0188)|Lung(183;0.0527)|COAD - Colon adenocarcinoma(174;0.14)|Epithelial(280;0.21)|all cancers(265;0.249)		CTGCAACGCCGGGGAGTTTCTG	0.594000													7	311					0	0	6.4e-05	0	0
AP4B1	10717	broad.mit.edu	37	1	114438597	114438597	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr1:114438597C>A	uc001eeb.2	-	9	1717	c.1574G>T	c.(1573-1575)GGC>GTC	p.G525V	uc001edv.1_Intron|AP4B1_uc001eec.2_Missense_Mutation_p.G357V|AP4B1_uc001eed.2_Missense_Mutation_p.G525V|AP4B1_uc010owp.1_Missense_Mutation_p.G426V|AP4B1_uc001eea.1_3'UTR|AP4B1_uc001eee.1_Missense_Mutation_p.G52V	NM_006594	NP_006585	Q9Y6B7	AP4B1_HUMAN	adaptor-related protein complex 4, beta 1	525					intracellular protein transport|vesicle-mediated transport	clathrin adaptor complex|soluble fraction|trans-Golgi network	protein binding|protein transporter activity			ovary(3)|central_nervous_system(1)	4	Lung SC(450;0.184)	all_cancers(81;4.5e-08)|all_epithelial(167;1.1e-07)|all_lung(203;1.53e-05)|Lung NSC(69;2.76e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		TTCATCAATGCCAACTAAGAG	0.448000													33	17					4.4194e-11	1.97088e-09	7.24521e-05	1	0
NRAS	4893	broad.mit.edu	37	1	115258748	115258748	+	Missense_Mutation	SNP	C	G	G	rs121913250		TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr1:115258748C>G	uc009wgu.2	-	2	288	c.34G>C	c.(34-36)GGT>CGT	p.G12R		NM_002524	NP_002515	P01111	RASN_HUMAN	neuroblastoma RAS viral (v-ras) oncogene homolog	12	GTP.		G -> C (in leukemia).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	Golgi membrane|plasma membrane	GTP binding|GTPase activity	p.G12D(333)|p.G12S(118)|p.G12C(71)|p.G12V(54)|p.G12A(36)|p.G12R(16)|p.G12G(4)|p.G12N(1)|p.G12T(1)|p.G12P(1)|p.G12Y(1)		haematopoietic_and_lymphoid_tissue(1008)|skin(956)|thyroid(334)|large_intestine(62)|NS(60)|soft_tissue(32)|lung(31)|upper_aerodigestive_tract(25)|urinary_tract(12)|liver(10)|adrenal_gland(9)|autonomic_ganglia(8)|testis(8)|central_nervous_system(8)|prostate(8)|breast(7)|biliary_tract(6)|ovary(6)|stomach(5)|pancreas(5)|endometrium(2)|kidney(2)|cervix(2)|eye(1)	2607	all_epithelial(7;5.11e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		CCAACACCACCTGCTCCAACC	0.493000	G12C(P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G12S(PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G12C(MOLT4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G12C(KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)	50	Mis		melanoma|MM|AML|thyroid				Noonan_syndrome	TSP Lung(23;0.16)|Multiple Myeloma(1;<1E-6)			98	32					0	0	0.000147903	0	0
NBPF7	343505	broad.mit.edu	37	1	120382882	120382883	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr1:120382882_120382883GG>TT	uc010oxk.1	-	4	1244_1245	c.623_624CC>AA	c.(622-624)CCC>CAA	p.P208Q		NM_001047980	NP_001041445	P0C2Y1	NBPF7_HUMAN	hypothetical protein LOC343505	208	NBPF 1.					cytoplasm				ovary(1)|skin(1)	2	all_cancers(5;7.07e-10)|all_epithelial(5;1.62e-10)|all_neural(166;0.153)|Breast(55;0.234)	all_lung(203;3.66e-05)|Lung NSC(69;0.000192)|all_epithelial(167;0.0347)		Lung(183;0.0103)|LUSC - Lung squamous cell carcinoma(189;0.0544)		AGTCTTACCTGGGAGCAGGTGA	0.401000													15	601					0	0	6.4e-05	0	0
ADAM30	11085	broad.mit.edu	37	1	120438670	120438671	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr1:120438670_120438671CC>AA	uc001eij.2	-	1	443_444	c.289_290GG>TT	c.(289-291)GGG>TTG	p.G97L		NM_021794	NP_068566	Q9UKF2	ADA30_HUMAN	ADAM metallopeptidase domain 30 preproprotein	97					proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			ovary(2)|lung(1)	3	all_cancers(5;7.07e-10)|all_epithelial(5;1.62e-10)|all_neural(166;0.153)|Breast(55;0.234)	all_lung(203;1.55e-06)|Lung NSC(69;1.04e-05)|all_epithelial(167;0.00138)		Lung(183;0.0204)|LUSC - Lung squamous cell carcinoma(189;0.117)		CAGCAGTTCCCCATGTTCTGTG	0.490000													18	837					0	0	6.4e-05	0	0
INSRR	3645	broad.mit.edu	37	1	156811545	156811545	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr1:156811545G>C	uc010pht.1	-	20	3693	c.3439C>G	c.(3439-3441)CGC>GGC	p.R1147G	NTRK1_uc001fqf.1_Intron|NTRK1_uc009wsi.1_Intron	NM_014215	NP_055030	P14616	INSRR_HUMAN	insulin receptor-related receptor precursor	1147	Cytoplasmic (Potential).|Protein kinase.				protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|insulin receptor substrate binding|metal ion binding|phosphatidylinositol 3-kinase binding|transmembrane receptor protein tyrosine kinase activity			lung(11)|ovary(5)|skin(2)|kidney(1)|central_nervous_system(1)	20	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					CCACCCTTGCGGTAATAGTCT	0.617000													3	109					0	0	6.4e-05	0	0
COPA	1314	broad.mit.edu	37	1	160281719	160281719	+	Silent	SNP	G	T	T			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr1:160281719G>T	uc009wti.2	-	11	1409	c.1015C>A	c.(1015-1017)CGA>AGA	p.R339R	COPA_uc001fvv.3_Silent_p.R339R|COPA_uc009wtj.1_Silent_p.R285R	NM_004371	NP_004362	P53621	COPA_HUMAN	coatomer protein complex, subunit alpha isoform	339					COPI coating of Golgi vesicle|intracellular protein transport|pancreatic juice secretion|retrograde vesicle-mediated transport, Golgi to ER	COPI vesicle coat|cytosol|extracellular space|microsome|soluble fraction	hormone activity|structural molecule activity			ovary(1)|skin(1)	2	all_cancers(52;8.15e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			CGTAAGAATCGGTCCTTGACA	0.488000													5	65					8.12818e-05	0.0034906	8.12818e-05	1	0
F5	2153	broad.mit.edu	37	1	169494092	169494092	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr1:169494092T>C	uc001ggg.1	-	19	5916	c.5771A>G	c.(5770-5772)AAG>AGG	p.K1924R		NM_000130	NP_000121	P12259	FA5_HUMAN	coagulation factor V precursor	1924	F5/8 type C 1.				cell adhesion|platelet activation|platelet degranulation	plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	all_hematologic(923;0.208)				Drotrecogin alfa(DB00055)	CTCTGAAGCCTTGATCTGTGA	0.249000													3	94					0	0	6.4e-05	0	0
RNF2	6045	broad.mit.edu	37	1	185062302	185062302	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr1:185062302T>C	uc001grc.1	+	4	591	c.358T>C	c.(358-360)TAT>CAT	p.Y120H	RNF2_uc001grd.1_Intron|RNF2_uc001gre.1_RNA	NM_007212	NP_009143	Q99496	RING2_HUMAN	ring finger protein 2	120	Interaction with HIP2.				histone H2A monoubiquitination|transcription, DNA-dependent	MLL1 complex|PcG protein complex|ubiquitin ligase complex	RING-like zinc finger domain binding|zinc ion binding			breast(1)	1		Breast(1374;0.000496)		Colorectal(1306;6.9e-08)|KIRC - Kidney renal clear cell carcinoma(1967;8.12e-06)		TCGTGATGAGTATGAAGCTCA	0.423000													27	32					0	0	0.000184323	0	0
SLC45A3	85414	broad.mit.edu	37	1	205632106	205632106	+	Silent	SNP	C	G	G			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr1:205632106C>G	uc001hda.1	-	3	1152	c.813G>C	c.(811-813)CTG>CTC	p.L271L	SLC45A3_uc010prn.1_5'Flank|SLC45A3_uc010pro.1_Silent_p.L105L|SLC45A3_uc010prp.1_Intron|ELK4_uc010prq.1_Intron	NM_033102	NP_149093	Q96JT2	S45A3_HUMAN	prostein	271					transmembrane transport	integral to membrane			SLC45A3/BRAF(2)	ovary(2)|prostate(2)	4	Breast(84;0.07)		BRCA - Breast invasive adenocarcinoma(75;0.0194)			AGAGCCGGCGCAGGGTGCGGG	0.677000			T	ETV1|ETV5|ELK4|ERG	prostate 								22	39					0	0	3.10358e-05	0	0
HHIPL2	79802	broad.mit.edu	37	1	222717047	222717048	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr1:222717047_222717048CC>AA	uc001hnh.1	-	2	863_864	c.805_806GG>TT	c.(805-807)GGG>TTG	p.G269L		NM_024746	NP_079022	Q6UWX4	HIPL2_HUMAN	HHIP-like 2 precursor	269					carbohydrate metabolic process	extracellular region	oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor|quinone binding			ovary(1)	1				GBM - Glioblastoma multiforme(131;0.0185)		TCTCTCATCCCCGATCCATGGG	0.525000													14	770					0	0	6.4e-05	0	0
TAF1A	9015	broad.mit.edu	37	1	222742993	222742994	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr1:222742993_222742994CC>AA	uc009xdz.1	-	7	941_942	c.752_753GG>TT	c.(751-753)GGG>GTT	p.G251V	TAF1A_uc001hni.1_Missense_Mutation_p.G137V|TAF1A_uc001hnj.2_Missense_Mutation_p.G251V|TAF1A_uc001hnk.2_Missense_Mutation_p.G137V|TAF1A_uc010pur.1_Missense_Mutation_p.G251V	NM_139352	NP_647603	Q15573	TAF1A_HUMAN	TBP-associated factor 1A isoform 2	251					regulation of transcription, DNA-dependent|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase I promoter	RNA polymerase I transcription factor complex	DNA binding				0				GBM - Glioblastoma multiforme(131;0.0186)		CATCTCGATCCCCATAGAATTC	0.332000													12	617					0	0	6.4e-05	0	0
DISP1	84976	broad.mit.edu	37	1	223177378	223177379	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr1:223177378_223177379CC>AA	uc001hnu.1	+	8	2786_2787	c.2639_2640CC>AA	c.(2638-2640)CCC>CAA	p.P880Q		NM_032890	NP_116279	Q96F81	DISP1_HUMAN	dispatched A	880					diaphragm development|protein homotrimerization|regulation of protein secretion|smoothened signaling pathway	basolateral plasma membrane|integral to membrane	hedgehog receptor activity|peptide transporter activity				0				GBM - Glioblastoma multiforme(131;0.102)		TGGAGCTTCCCCTACAAGCAAG	0.505000													14	743					0	0	6.4e-05	0	0
ZNF669	79862	broad.mit.edu	37	1	247264377	247264377	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr1:247264377C>T	uc001ice.2	-	4	867	c.694G>A	c.(694-696)GTT>ATT	p.V232I	ZNF669_uc001icf.2_Missense_Mutation_p.V146I	NM_024804	NP_079080	Q96BR6	ZN669_HUMAN	zinc finger protein 669 isoform 1	232	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(71;4.09e-05)|all_epithelial(71;6.72e-06)|Breast(184;0.0226)|Ovarian(71;0.0283)|all_lung(81;0.0488)|Lung NSC(105;0.053)		OV - Ovarian serous cystadenocarcinoma(106;0.00427)			GGAACAGAAACGAAGAATTTC	0.378000													130	11					0	0	0.000147903	0	0
C10orf18	54906	broad.mit.edu	37	10	5788339	5788339	+	Silent	SNP	C	T	T			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr10:5788339C>T	uc001iij.2	+	15	3580	c.2955C>T	c.(2953-2955)GGC>GGT	p.G985G	C10orf18_uc001iik.2_Intron	NM_017782	NP_060252	Q5VWN6	CJ018_HUMAN	hypothetical protein LOC54906	985										ovary(1)|central_nervous_system(1)	2						ATGGGCCTGGCAGTCAGCCAG	0.468000													27	34					0	0	0.000147802	0	0
ARMC3	219681	broad.mit.edu	37	10	23326295	23326295	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr10:23326295G>A	uc001irm.3	+	19	2589	c.2506G>A	c.(2506-2508)GGA>AGA	p.G836R	ARMC3_uc010qcv.1_Missense_Mutation_p.G829R|ARMC3_uc010qcw.1_Missense_Mutation_p.G573R	NM_173081	NP_775104	Q5W041	ARMC3_HUMAN	armadillo repeat containing 3	836							binding				0						CTCTCGGAAGGGAGTGATTGG	0.527000													14	25					0	0	0.000219431	0	0
LOC653544	653544	broad.mit.edu	37	10	135491100	135491100	+	Silent	SNP	G	A	A			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr10:135491100G>A	uc010qvi.1	+	1	822	c.711G>A	c.(709-711)TCG>TCA	p.S237S		NM_001127389	NP_001120861	F5GZ66	F5GZ66_HUMAN	double homeobox, 4-like	237						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						CTGCTCCCTCGTGGGTCGCCT	0.761000													9	23					0	0	3.86212e-05	0	0
SLC6A5	9152	broad.mit.edu	37	11	20629080	20629080	+	Silent	SNP	G	T	T			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr11:20629080G>T	uc001mqd.2	+	5	1140	c.867G>T	c.(865-867)GTG>GTT	p.V289V	SLC6A5_uc009yic.2_Silent_p.V54V	NM_004211	NP_004202	Q9Y345	SC6A5_HUMAN	solute carrier family 6 (neurotransmitter	289	Helical; Name=3; (Potential).				synaptic transmission	integral to membrane|plasma membrane	glycine:sodium symporter activity|neurotransmitter:sodium symporter activity			ovary(2)|breast(1)|skin(1)	4					Glycine(DB00145)	ACTACAATGTGATTATTTGCT	0.438000													54	64					4.45325e-31	2.06542e-29	0.000147903	1	0
FAT3	120114	broad.mit.edu	37	11	92532703	92532704	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr11:92532703_92532704CC>AA	uc001pdj.3	+	9	6541_6542	c.6524_6525CC>AA	c.(6523-6525)CCC>CAA	p.P2175Q		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	2175	Cadherin 19.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				GTGGAGCTTCCCATCACTATTG	0.431000										TCGA Ovarian(4;0.039)			11	431					0	0	6.4e-05	0	0
DYNC2H1	79659	broad.mit.edu	37	11	102995935	102995935	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr11:102995935T>C	uc001pho.2	+	12	1912	c.1768T>C	c.(1768-1770)TCT>CCT	p.S590P	DYNC2H1_uc001phn.1_Missense_Mutation_p.S590P|DYNC2H1_uc009yxe.1_Missense_Mutation_p.S590P	NM_001080463	NP_001073932	Q8NCM8	DYHC2_HUMAN	dynein, cytoplasmic 2, heavy chain 1	590	Stem (By similarity).				cell projection organization|Golgi organization|microtubule-based movement|multicellular organismal development	cilium axoneme|dynein complex|Golgi apparatus|microtubule|plasma membrane	ATP binding|ATPase activity|microtubule motor activity				0		Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.00348)		BRCA - Breast invasive adenocarcinoma(274;0.000177)|Epithelial(105;0.0785)		TCGTCAGCTCTCTGCACTTGG	0.363000													12	22					0	0	0.000219431	0	0
TECTA	7007	broad.mit.edu	37	11	121031078	121031078	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr11:121031078G>A	uc010rzo.1	+	14	4924	c.4924G>A	c.(4924-4926)GTA>ATA	p.V1642I		NM_005422	NP_005413	O75443	TECTA_HUMAN	tectorin alpha precursor	1642	VWFD 4.				cell-matrix adhesion|sensory perception of sound	anchored to membrane|plasma membrane|proteinaceous extracellular matrix				breast(6)|ovary(2)|skin(2)	10	all_hematologic(175;0.208)	Breast(109;0.000766)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.04e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.166)		GAAGCCGGTGGTAAGCAGCGT	0.552000													45	72					0	0	0.000147903	0	0
CDCA3	83461	broad.mit.edu	37	12	6958754	6958754	+	Silent	SNP	C	T	T			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr12:6958754C>T	uc001qrg.2	-	4	647	c.519G>A	c.(517-519)AGG>AGA	p.R173R	CDCA3_uc001qre.2_Silent_p.R173R|uc001qrf.1_5'Flank|USP5_uc001qri.3_5'Flank|USP5_uc001qrh.3_5'Flank	NM_031299	NP_112589	Q99618	CDCA3_HUMAN	cell division cycle associated 3	173					cell division|mitosis	cytosol					0						TCTCAGGGTCCCTTGAGGGCT	0.517000													48	297					0	0	0.000147903	0	0
GDF3	9573	broad.mit.edu	37	12	7848184	7848184	+	Silent	SNP	C	T	T			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr12:7848184C>T	uc001qte.2	-	1	177	c.141G>A	c.(139-141)GTG>GTA	p.V47V		NM_020634	NP_065685	Q9NR23	GDF3_HUMAN	growth differentiation factor 3 precursor	47					eye development|growth|skeletal system development	extracellular space	cytokine activity|growth factor activity			skin(3)|ovary(1)|lung(1)|central_nervous_system(1)	6						AGATATAAGGCACAGGTTGGA	0.507000													15	64					0	0	2.31682e-05	0	0
LRP6	4040	broad.mit.edu	37	12	12279720	12279721	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr12:12279720_12279721CC>AA	uc001rah.3	-	20	4358_4359	c.4216_4217GG>TT	c.(4216-4218)GGG>TTG	p.G1406L	BCL2L14_uc001raf.1_Intron|LRP6_uc010shl.1_Missense_Mutation_p.G1361L	NM_002336	NP_002327	O75581	LRP6_HUMAN	low density lipoprotein receptor-related protein	1406	Cytoplasmic (Potential).				cellular response to cholesterol|negative regulation of protein phosphorylation|negative regulation of protein serine/threonine kinase activity|negative regulation of smooth muscle cell apoptosis|neural crest formation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell cycle|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway involved in dorsal/ventral axis specification|Wnt receptor signaling pathway involved in dorsal/ventral axis specification	cell surface|cytoplasmic vesicle|endoplasmic reticulum|integral to membrane|plasma membrane	coreceptor activity|frizzled binding|kinase inhibitor activity|low-density lipoprotein receptor activity|protein homodimerization activity|toxin transporter activity|Wnt-protein binding			lung(4)|skin(4)|ovary(2)|kidney(1)|central_nervous_system(1)	12		Prostate(47;0.0865)				CATAGTTTCCCCATCTCCCTTC	0.441000													15	872					0	0	6.4e-05	0	0
HIGD1C	613227	broad.mit.edu	37	12	51347824	51347824	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr12:51347824C>T	uc010smw.1	+	1	43	c.43C>T	c.(43-45)CAA>TAA	p.Q15*		NM_001109619	NP_001103089	A8MV81	HIG1C_HUMAN	HIG1 domain family, member 1C	15	HIG1.|Cytoplasmic (Potential).					integral to membrane					0						GGATGAAGGCCAATTATCCCG	0.378000													54	205					0	0	0.000147903	0	0
LOC284232	284232	broad.mit.edu	37	13	19415742	19415742	+	RNA	SNP	T	C	C			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr13:19415742T>C	uc010tcj.1	-	1		c.30368A>G				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						GCTGTTTTCCTAATCTTTCTT	0.313000													3	77					0	0	3.59834e-05	0	0
KL	9365	broad.mit.edu	37	13	33638145	33638146	+	Missense_Mutation	DNP	CG	AT	AT	rs139939367		TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr13:33638145_33638146CG>AT	uc001uus.2	+	5	2869_2870	c.2861_2862CG>AT	c.(2860-2862)CCG>CAT	p.P954H		NM_004795	NP_004786	Q9UEF7	KLOT_HUMAN	klotho precursor	954	Extracellular (Potential).		P -> L (in a colorectal cancer sample; somatic mutation).		aging|carbohydrate metabolic process|insulin receptor signaling pathway|positive regulation of bone mineralization	extracellular space|extracellular space|integral to membrane|integral to plasma membrane|membrane fraction|soluble fraction	beta-glucosidase activity|beta-glucuronidase activity|cation binding|fibroblast growth factor binding|hormone activity|signal transducer activity|vitamin D binding	p.P954L(1)		large_intestine(1)|ovary(1)|skin(1)	3	all_epithelial(80;0.133)	Ovarian(182;1.78e-06)|Breast(139;4.08e-05)|Hepatocellular(188;0.00886)|Lung SC(185;0.0262)		GBM - Glioblastoma multiforme(144;7.13e-230)|all cancers(112;1.33e-165)|OV - Ovarian serous cystadenocarcinoma(117;1.09e-113)|Epithelial(112;3.79e-112)|Lung(94;8.52e-27)|LUSC - Lung squamous cell carcinoma(192;1.4e-13)|Kidney(163;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(186;5.63e-08)|BRCA - Breast invasive adenocarcinoma(63;1.41e-05)		AATGGTTTCCCGGGCCCAGAAA	0.446000													5	86					0	0	6.4e-05	0	0
KCTD4	386618	broad.mit.edu	37	13	45768292	45768293	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr13:45768292_45768293GG>TT	uc001uzx.3	-	2	814_815	c.410_411CC>AA	c.(409-411)CCC>CAA	p.P137Q	GTF2F2_uc001uzv.2_Intron|GTF2F2_uc001uzw.2_Intron	NM_198404	NP_940686	Q8WVF5	KCTD4_HUMAN	potassium channel tetramerisation domain	137						voltage-gated potassium channel complex	voltage-gated potassium channel activity				0		Lung NSC(96;6.55e-05)|Breast(139;0.00378)|Prostate(109;0.00438)|Lung SC(185;0.0262)|Hepatocellular(98;0.0524)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;0.000249)|BRCA - Breast invasive adenocarcinoma(63;0.207)		TAGTCTCTCTGGGTGTTAGCTG	0.396000													7	129					0	0	6.4e-05	0	0
LMO7	4008	broad.mit.edu	37	13	76379823	76379824	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr13:76379823_76379824CC>AA	uc001vjv.2	+	6	1184_1185	c.424_425CC>AA	c.(424-426)CCA>AAA	p.P142K	LMO7_uc010thv.1_Intron|LMO7_uc001vjt.1_Intron|LMO7_uc010thw.1_Intron|LMO7_uc001vjw.1_Intron	NM_015842	NP_056667	Q8WWI1	LMO7_HUMAN	LIM domain only 7 isoform 2	427						cytoplasm|nucleus|ubiquitin ligase complex	ubiquitin-protein ligase activity|zinc ion binding			large_intestine(2)|ovary(1)|prostate(1)|skin(1)	5		Breast(118;0.0992)		GBM - Glioblastoma multiforme(99;0.0109)		ATGTTGGACCCCAGAAGATGTG	0.411000													9	343					0	0	6.4e-05	0	0
CHD8	57680	broad.mit.edu	37	14	21861979	21861979	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr14:21861979C>T	uc001was.1	-	32	5232	c.5138G>A	c.(5137-5139)CGC>CAC	p.R1713H	CHD8_uc001war.1_Missense_Mutation_p.R1609H|SNORD9_uc001wat.1_5'Flank	NM_020920	NP_065971	Q9HCK8	CHD8_HUMAN	chromodomain helicase DNA binding protein 8	1992					ATP-dependent chromatin remodeling|canonical Wnt receptor signaling pathway|negative regulation of transcription, DNA-dependent|negative regulation of Wnt receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase III promoter|transcription, DNA-dependent	MLL1 complex	ATP binding|beta-catenin binding|DNA binding|DNA helicase activity|DNA-dependent ATPase activity|methylated histone residue binding|p53 binding			ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|breast(1)|skin(1)	10	all_cancers(95;0.00121)		Epithelial(56;2.55e-06)|all cancers(55;1.73e-05)	GBM - Glioblastoma multiforme(265;0.00424)		TGAGGCAGTGCGTGAGGTATA	0.557000													5	13					0	0	3.59834e-05	0	0
TGM1	7051	broad.mit.edu	37	14	24729191	24729191	+	Nonsense_Mutation	SNP	G	T	T	rs147879156		TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr14:24729191G>T	uc001wod.2	-	5	955	c.831C>A	c.(829-831)TAC>TAA	p.Y277*	TGM1_uc010tog.1_Intron	NM_000359	NP_000350	P22735	TGM1_HUMAN	transglutaminase 1	277					cell envelope organization|keratinization|peptide cross-linking	cornified envelope|intrinsic to membrane	acyltransferase activity|metal ion binding|protein binding|protein-glutamine gamma-glutamyltransferase activity			central_nervous_system(2)|ovary(1)	3				GBM - Glioblastoma multiforme(265;0.0186)	L-Glutamine(DB00130)	CTTCGGTCCCGTAGTAAATTC	0.557000													17	19					4.35082e-09	1.90369e-07	0.000175454	1	0
TRIM9	114088	broad.mit.edu	37	14	51446212	51446212	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr14:51446212T>C	uc001wyx.3	-	9	2728	c.1963A>G	c.(1963-1965)AGA>GGA	p.R655G	TRIM9_uc001wyy.2_Missense_Mutation_p.R736G	NM_015163	NP_055978	Q9C026	TRIM9_HUMAN	tripartite motif protein 9 isoform 1	655	B30.2/SPRY.				proteasomal ubiquitin-dependent protein catabolic process	cell junction|cytoskeleton|dendrite|synaptic vesicle	protein homodimerization activity|ubiquitin-protein ligase activity|zinc ion binding			skin(2)|lung(1)	3	all_epithelial(31;0.00418)|Breast(41;0.148)					AAGTTTTTTCTATTTAAGTCG	0.448000													41	107					0	0	0.000147903	0	0
NOX5	79400	broad.mit.edu	37	15	69325408	69325408	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr15:69325408G>A	uc002ars.1	+	5	666	c.646G>A	c.(646-648)GCC>ACC	p.A216T	NOX5_uc002arp.1_Missense_Mutation_p.A198T|NOX5_uc002arq.1_Missense_Mutation_p.A170T|NOX5_uc010bid.1_Missense_Mutation_p.A181T|NOX5_uc002arr.1_Missense_Mutation_p.A188T|NOX5_uc010bie.1_Missense_Mutation_p.A16T|NOX5_uc010bif.1_RNA	NM_024505	NP_078781	Q96PH1	NOX5_HUMAN	NADPH oxidase, EF-hand calcium binding domain 5	216	Cytoplasmic (Potential).				angiogenesis|angiogenesis|cytokine secretion|cytokinesis|electron transport chain|endothelial cell proliferation|induction of apoptosis|positive regulation of reactive oxygen species metabolic process|regulation of fusion of sperm to egg plasma membrane|regulation of proton transport|superoxide anion generation	endoplasmic reticulum|endoplasmic reticulum|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|hydrogen ion channel activity|NADP binding|superoxide-generating NADPH oxidase activity			breast(1)|pancreas(1)	2						GAcggcccccgccccccgccc	0.532000													23	9					0	0	0.000227799	0	0
ACSM1	116285	broad.mit.edu	37	16	20702419	20702419	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr16:20702419G>A	uc002dhm.1	-	1	160	c.92C>T	c.(91-93)TCT>TTT	p.S31F	ACSM1_uc002dhn.1_RNA|ACSM1_uc010bwg.1_Missense_Mutation_p.S31F	NM_052956	NP_443188	Q08AH1	ACSM1_HUMAN	acyl-CoA synthetase medium-chain family member	31					benzoate metabolic process|butyrate metabolic process|energy derivation by oxidation of organic compounds|fatty acid oxidation|xenobiotic metabolic process	mitochondrial matrix	acyl-CoA ligase activity|ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding			central_nervous_system(1)|skin(1)	2						TTCTGATAAAGACCGGCAGCG	0.498000													46	137					0	0	0.000147903	0	0
MT2A	4502	broad.mit.edu	37	16	56643177	56643177	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr16:56643177T>C	uc002ejh.2	+	3	187	c.97T>C	c.(97-99)TGC>CGC	p.C33R	MT1A_uc002eji.2_Intron	NM_005953	NP_005944	P02795	MT2_HUMAN	metallothionein 2A	33	Alpha.	Divalent metal cation; cluster A.			cellular copper ion homeostasis|interferon-gamma-mediated signaling pathway		metal ion binding|protein binding				0						GCCCCCAGGCTGCTGCTCCTG	0.602000													10	34					0	0	3.86212e-05	0	0
ACAP1	9744	broad.mit.edu	37	17	7240098	7240098	+	Silent	SNP	C	G	G			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr17:7240098C>G	uc002ggd.2	+	1	251	c.45C>G	c.(43-45)CCC>CCG	p.P15P		NM_014716	NP_055531	Q15027	ACAP1_HUMAN	centaurin beta1	15	BAR.|Required for formation of endosomal tubules when overexpressed with PIP5K1C.				intracellular signal transduction|lipid metabolic process|protein transport|regulation of ARF GTPase activity		ARF GTPase activator activity|phospholipase C activity|protein binding|zinc ion binding			breast(2)|large_intestine(1)	3						AGGACTCACCCCGTTTCCGGT	0.627000													15	62					0	0	0.000219431	0	0
MYH8	4626	broad.mit.edu	37	17	10318882	10318882	+	Silent	SNP	G	A	A			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr17:10318882G>A	uc002gmm.2	-	7	650	c.555C>T	c.(553-555)GCC>GCT	p.A185A	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	185	ATP.|Myosin head-like.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						CAGTCTTTCCGGCACCAGATT	0.438000									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				5	96					0	0	0.000157383	0	0
ZNF582	147948	broad.mit.edu	37	19	56895494	56895494	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr19:56895494G>C	uc002qmz.1	-	5	1451	c.1292C>G	c.(1291-1293)GCT>GGT	p.A431G	ZNF582_uc002qmy.2_Missense_Mutation_p.A462G	NM_144690	NP_653291	Q96NG8	ZN582_HUMAN	zinc finger protein 582	431	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|large_intestine(1)	4		Colorectal(82;0.000256)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0547)		ATGACTAAAAGCCTTCCCACA	0.388000													3	106					0	0	6.4e-05	0	0
TRIM28	10155	broad.mit.edu	37	19	59060419	59060419	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr19:59060419C>T	uc002qtg.1	+	12	1763	c.1474C>T	c.(1474-1476)CGC>TGC	p.R492C	TRIM28_uc010eut.1_Missense_Mutation_p.R410C|TRIM28_uc002qth.1_Missense_Mutation_p.R107C	NM_005762	NP_005753	Q13263	TIF1B_HUMAN	tripartite motif-containing 28 protein	492	HP1 box.|PxVxL motif.				epithelial to mesenchymal transition|positive regulation of transcription, DNA-dependent	nucleoplasm	chromo shadow domain binding|ligase activity|transcription corepressor activity|zinc ion binding			ovary(1)|lung(1)|breast(1)	3		all_cancers(17;4.4e-22)|all_epithelial(17;2.15e-16)|Lung NSC(17;1.24e-06)|all_lung(17;5.41e-06)|Colorectal(82;3.46e-05)|Renal(17;0.00179)|all_neural(62;0.00607)|Ovarian(87;0.0443)|Breast(46;0.0928)|Medulloblastoma(540;0.184)		UCEC - Uterine corpus endometrioid carcinoma (67;0.0434)|all cancers(4;1.39e-13)|Epithelial(4;1.01e-10)|OV - Ovarian serous cystadenocarcinoma(4;2.34e-09)|GBM - Glioblastoma multiforme(193;0.0102)|Lung(386;0.179)		GAGCCTTGAACGCCTGGACCT	0.582000													21	26					0	0	3.10358e-05	0	0
UBE2M	9040	broad.mit.edu	37	19	59067503	59067503	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr19:59067503G>A	uc002qtl.3	-	6	1100	c.505C>T	c.(505-507)CGG>TGG	p.R169W	CHMP2A_uc002qti.2_5'Flank|CHMP2A_uc002qtj.2_5'Flank|CHMP2A_uc002qtk.2_5'Flank	NM_003969	NP_003960	P61081	UBC12_HUMAN	ubiquitin-conjugating enzyme E2M	169					protein neddylation		ATP binding|NEDD8 ligase activity|protein binding|ribosomal S6-glutamic acid ligase activity|ubiquitin-protein ligase activity			ovary(1)|pancreas(1)	2		all_cancers(17;4.4e-22)|all_epithelial(17;2.15e-16)|Lung NSC(17;1.24e-06)|all_lung(17;5.41e-06)|Colorectal(82;3.46e-05)|Renal(17;0.00179)|all_neural(62;0.00607)|Ovarian(87;0.0443)|Breast(46;0.0928)|Medulloblastoma(540;0.184)		UCEC - Uterine corpus endometrioid carcinoma (67;0.0434)|all cancers(4;1.39e-13)|Epithelial(4;1.01e-10)|OV - Ovarian serous cystadenocarcinoma(4;2.34e-09)|GBM - Glioblastoma multiforme(193;0.0102)|Lung(386;0.179)		TAGCCACCCCGCATGGAGCGC	0.642000													13	49					0	0	2.31682e-05	0	0
SLC4A5	57835	broad.mit.edu	37	2	74481804	74481805	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr2:74481804_74481805CC>AA	uc002sko.1	-	9	1056_1057	c.1054_1055GG>TT	c.(1054-1056)GGG>TTG	p.G352L	SLC4A5_uc002skl.2_RNA|SLC4A5_uc002skn.2_Missense_Mutation_p.G352L|SLC4A5_uc010ffc.1_Missense_Mutation_p.G352L|SLC4A5_uc002skp.1_Missense_Mutation_p.G288L|SLC4A5_uc002sks.1_Missense_Mutation_p.G352L	NM_021196	NP_067019	Q9BY07	S4A5_HUMAN	sodium bicarbonate transporter 4 isoform a	352	Cytoplasmic (Potential).					apical plasma membrane|integral to membrane	inorganic anion exchanger activity|sodium:bicarbonate symporter activity			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	9						TTTTGCTCTCCCAGAAGGTCCC	0.287000													9	272					0	0	6.4e-05	0	0
ZNF2	7549	broad.mit.edu	37	2	95846850	95846850	+	Missense_Mutation	SNP	T	A	A			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr2:95846850T>A	uc002suf.2	+	5	739	c.277T>A	c.(277-279)TGG>AGG	p.W93R	ZNF2_uc002sug.2_Missense_Mutation_p.W51R|ZNF2_uc010yue.1_Missense_Mutation_p.W55R|ZNF2_uc010fhs.2_Missense_Mutation_p.W13R	NM_021088	NP_066574	Q9BSG1	ZNF2_HUMAN	zinc finger protein 2 isoform a	93					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Ovarian(717;0.00768)		READ - Rectum adenocarcinoma(193;0.0222)		TGTTCCAGACTGGGAAACTAA	0.408000													22	72					0	0	0.000229342	0	0
MITD1	129531	broad.mit.edu	37	2	99785865	99785865	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr2:99785865A>T	uc002szs.1	-	7	771	c.723T>A	c.(721-723)TTT>TTA	p.F241L	MRPL30_uc002szl.1_Intron|MRPL30_uc002szr.2_Intron	NM_138798	NP_620153	Q8WV92	MITD1_HUMAN	MIT, microtubule interacting and transport,	241					protein transport	late endosome membrane				large_intestine(1)|ovary(1)	2						GCTTCTTATGAAAAATGTCTA	0.274000													11	45					0	0	6.40141e-05	0	0
LYG2	254773	broad.mit.edu	37	2	99861803	99861803	+	Silent	SNP	G	T	T			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr2:99861803G>T	uc002szw.1	-	4	416	c.303C>A	c.(301-303)ATC>ATA	p.I101I	MRPL30_uc002szl.1_Intron|LYG2_uc010fip.1_Silent_p.I101I|LYG2_uc002szx.1_Silent_p.I101I	NM_175735	NP_783862	Q86SG7	LYG2_HUMAN	lysozyme G-like 2 precursor	101					cell wall macromolecule catabolic process|peptidoglycan catabolic process	extracellular region	lysozyme activity			ovary(1)	1						CCCTGGAGATGATGGCTGCGA	0.498000													15	66					6.31663e-08	2.73799e-06	2.31682e-05	1	0
EPC2	26122	broad.mit.edu	37	2	149528378	149528378	+	Silent	SNP	T	G	G			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr2:149528378T>G	uc010zbt.1	+	9	1275	c.1248T>G	c.(1246-1248)GCT>GCG	p.A416A		NM_015630	NP_056445	Q52LR7	EPC2_HUMAN	enhancer of polycomb homolog 2	416					chromatin modification|DNA repair|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				ovary(1)|breast(1)|pancreas(1)	3				BRCA - Breast invasive adenocarcinoma(221;0.0516)		TGGACCAAGCTAACCATTCAT	0.353000													19	66					0	0	0.000175454	0	0
NEB	4703	broad.mit.edu	37	2	152382515	152382516	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr2:152382515_152382516CG>AT	uc010fnx.2	-	122	17205_17206	c.17014_17015CG>AT	c.(17014-17016)CGG>ATG	p.R5672M	NEB_uc002txr.2_Missense_Mutation_p.R2095M|NEB_uc002txt.3_Missense_Mutation_p.R177M	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	5672	Nebulin 155.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle	p.R5672Q(1)		ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		AACAGTGTCCCGGGTCTCTGGT	0.490000													10	300					0	0	6.4e-05	0	0
MARCH7	64844	broad.mit.edu	37	2	160604709	160604709	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr2:160604709C>A	uc002uax.2	+	5	1030	c.908C>A	c.(907-909)TCC>TAC	p.S303Y	MARCH7_uc010foq.2_Missense_Mutation_p.S303Y|MARCH7_uc010zcn.1_Missense_Mutation_p.S247Y|MARCH7_uc010for.2_Missense_Mutation_p.S265Y|MARCH7_uc002uay.2_RNA	NM_022826	NP_073737	Q9H992	MARH7_HUMAN	axotrophin	303	Ser-rich.						ligase activity|zinc ion binding				0						AGTCAGGATTCCTTGAATACA	0.403000													18	53					2.39187e-15	1.0876e-13	0.000132079	1	0
TTN	7273	broad.mit.edu	37	2	179480121	179480121	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr2:179480121C>G	uc010zfg.1	-	208	41071	c.40847G>C	c.(40846-40848)GGT>GCT	p.G13616A	TTN_uc010zfh.1_Missense_Mutation_p.G7311A|TTN_uc010zfi.1_Missense_Mutation_p.G7244A|TTN_uc010zfj.1_Missense_Mutation_p.G7119A	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	14543							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GATGCGTGAACCACCATCATT	0.413000													118	113					0	0	0.000147903	0	0
CFLAR	8837	broad.mit.edu	37	2	201997825	201997825	+	Missense_Mutation	SNP	T	G	G			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr2:201997825T>G	uc002uxb.3	+	3	807	c.355T>G	c.(355-357)TAC>GAC	p.Y119D	CFLAR_uc002uwy.2_Missense_Mutation_p.Y119D|CFLAR_uc002uwz.2_Missense_Mutation_p.Y119D|CFLAR_uc002uxa.3_Missense_Mutation_p.Y119D|CFLAR_uc010zhk.1_Missense_Mutation_p.Y23D|CFLAR_uc002uxc.3_Missense_Mutation_p.Y119D|CFLAR_uc010zhl.1_Missense_Mutation_p.Y23D|CFLAR_uc010fsw.1_RNA|CFLAR_uc002uxd.3_Missense_Mutation_p.Y119D|CFLAR_uc002uxe.2_Missense_Mutation_p.Y119D|CFLAR_uc002uxf.2_Missense_Mutation_p.Y119D|CFLAR_uc010fsy.2_RNA|CFLAR_uc010fsx.2_Missense_Mutation_p.Y119D|CFLAR_uc010zhm.1_Missense_Mutation_p.Y23D|CFLAR_uc010fsz.2_Translation_Start_Site	NM_003879	NP_003870	O15519	CFLAR_HUMAN	CASP8 and FADD-like apoptosis regulator isoform	119	Interaction with FADD.|Interaction with caspase-8.|DED 2.|Not proteolytically processed and involved in apoptosis inhibition.|Interaction with caspase-8 propeptide.				anti-apoptosis|apoptosis|induction of apoptosis by extracellular signals|interspecies interaction between organisms|positive regulation of I-kappaB kinase/NF-kappaB cascade|proteolysis		cysteine-type endopeptidase activity|protein binding				0						CATGAAGGATTACATGGGCCG	0.438000													5	30					0	0	3.59834e-05	0	0
CHPF	79586	broad.mit.edu	37	2	220404347	220404347	+	Missense_Mutation	SNP	C	G	G	rs142415191	byFrequency	TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr2:220404347C>G	uc002vmc.3	-	4	2313	c.2086G>C	c.(2086-2088)GAA>CAA	p.E696Q	CHPF_uc010zlh.1_Missense_Mutation_p.E534Q	NM_024536	NP_078812	Q8IZ52	CHSS2_HUMAN	chondroitin polymerizing factor	696	Lumenal (Potential).					Golgi cisterna membrane|integral to membrane	glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity|metal ion binding|N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity|protein binding				0		Renal(207;0.0183)		Epithelial(149;3.02e-08)|all cancers(144;3.41e-06)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00802)		TCTTCTTGTTCTGAGGCTGCC	0.647000													29	72					0	0	8.91981e-05	0	0
SNED1	25992	broad.mit.edu	37	2	242011004	242011004	+	Silent	SNP	C	T	T			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr2:242011004C>T	uc002wah.1	+	25	3603	c.3603C>T	c.(3601-3603)GGC>GGT	p.G1201G	SNED1_uc002wai.1_Silent_p.G436G|SNED1_uc002waj.1_Silent_p.G288G|SNED1_uc002wak.2_Silent_p.G288G|SNED1_uc002wal.2_Silent_p.G28G	NM_001080437	NP_001073906	Q8TER0	SNED1_HUMAN	6720455I24Rik homolog precursor	1201				HSEPAHLYIITSPRDGADRRW -> Q (in Ref. 3; AAQ04558).	cell-matrix adhesion	extracellular region	calcium ion binding			breast(1)|central_nervous_system(1)	2		all_cancers(19;7.48e-31)|all_epithelial(40;1.35e-12)|Breast(86;0.000148)|Renal(207;0.00528)|Ovarian(221;0.104)|Esophageal squamous(248;0.131)|all_lung(227;0.17)|all_hematologic(139;0.182)|Melanoma(123;0.238)		Epithelial(32;6.46e-32)|all cancers(36;6.23e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.1e-14)|Kidney(56;6.35e-09)|KIRC - Kidney renal clear cell carcinoma(57;5.98e-08)|BRCA - Breast invasive adenocarcinoma(100;3.66e-06)|Lung(119;0.00072)|LUSC - Lung squamous cell carcinoma(224;0.00553)|Colorectal(34;0.0162)|COAD - Colon adenocarcinoma(134;0.109)		CCAGGGATGGCGCTGACAGAC	0.697000													5	5					0	0	8.12818e-05	0	0
FRG1B	284802	broad.mit.edu	37	20	29628299	29628299	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr20:29628299A>G	uc010ztl.1	+	3	243	c.211A>G	c.(211-213)AGT>GGT	p.S71G	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Missense_Mutation_p.S23G					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						AGAAGCAAAAAGTAAAACAGC	0.363000													3	63					0	0	1.23904e-05	0	0
NCOA6	23054	broad.mit.edu	37	20	33345744	33345744	+	Silent	SNP	C	T	T			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr20:33345744C>T	uc002xav.2	-	8	3378	c.807G>A	c.(805-807)CAG>CAA	p.Q269Q	NCOA6_uc002xaw.2_Silent_p.Q269Q|NCOA6_uc010gew.1_Silent_p.Q226Q	NM_014071	NP_054790	Q14686	NCOA6_HUMAN	nuclear receptor coactivator 6	269	TBP/GTF2A-binding region.|NCOA1-binding region.|Gln-rich.|CREBBP-binding region.				brain development|cellular lipid metabolic process|DNA recombination|DNA repair|DNA replication|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|heart development|myeloid cell differentiation|positive regulation of transcription from RNA polymerase II promoter|response to hormone stimulus|transcription initiation from RNA polymerase II promoter	transcription factor complex	chromatin binding|enzyme binding|estrogen receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|retinoid X receptor binding|thyroid hormone receptor binding			ovary(3)|breast(3)|central_nervous_system(1)	7						gctgctgctgctgttgttgtt	0.313000													8	63					0	0	0.000157383	0	0
MAFB	9935	broad.mit.edu	37	20	39317284	39317284	+	Silent	SNP	C	T	T			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr20:39317284C>T	uc002xji.2	-	1	593	c.207G>A	c.(205-207)TCG>TCA	p.S69S		NM_005461	NP_005452	Q9Y5Q3	MAFB_HUMAN	transcription factor MAFB	69					negative regulation of erythrocyte differentiation		sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding				0		Myeloproliferative disorder(115;0.00878)				AGCTGGGCGACGAGGGCACGG	0.667000			T	IGH@	MM								32	76					0	0	0.000109025	0	0
TTPAL	79183	broad.mit.edu	37	20	43115234	43115234	+	Splice_Site	SNP	A	G	G			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr20:43115234A>G	uc002xmc.1	+	5	764	c.640_splice	c.e5-2	p.D214_splice	TTPAL_uc002xmd.1_Splice_Site_p.D214_splice|TTPAL_uc010ggr.1_Splice_Site_p.D27_splice	NM_024331	NP_077307	Q9BTX7	TTPAL_HUMAN	tocopherol (alpha) transfer protein-like							intracellular	transporter activity			breast(1)	1						TTTCCCACACAGGATGGTTTC	0.423000													25	49					0	0	0.000147802	0	0
WFDC8	90199	broad.mit.edu	37	20	44184401	44184401	+	Silent	SNP	G	A	A	rs150100809	byFrequency	TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr20:44184401G>A	uc002xow.2	-	4	463	c.384C>T	c.(382-384)TGC>TGT	p.C128C	WFDC8_uc002xox.2_Silent_p.C128C	NM_181510	NP_852611	Q8IUA0	WFDC8_HUMAN	WAP four-disulfide core domain 8 precursor	128	BPTI/Kunitz inhibitor.					extracellular region	serine-type endopeptidase inhibitor activity				0		Myeloproliferative disorder(115;0.0122)				CATTCCCTTCGCAGCCCCTGT	0.468000													27	100					0	0	3.70037e-05	0	0
SULF2	55959	broad.mit.edu	37	20	46318883	46318883	+	Missense_Mutation	SNP	C	T	T	rs142401598		TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr20:46318883C>T	uc002xto.2	-	5	1054	c.724G>A	c.(724-726)GCA>ACA	p.A242T	SULF2_uc002xtr.2_Missense_Mutation_p.A242T|SULF2_uc002xtq.2_Missense_Mutation_p.A242T|SULF2_uc010ghv.1_Missense_Mutation_p.A242T	NM_018837	NP_061325	Q8IWU5	SULF2_HUMAN	sulfatase 2 isoform a precursor	242					bone development|heparan sulfate proteoglycan metabolic process|kidney development|negative regulation of fibroblast growth factor receptor signaling pathway	cell surface|endoplasmic reticulum|extracellular space|Golgi stack	arylsulfatase activity|calcium ion binding			ovary(2)|breast(2)|pancreas(1)|skin(1)	6						TGCTGAGATGCGTTTGGGAAG	0.572000													10	56					0	0	2.17888e-05	0	0
C21orf99	149992	broad.mit.edu	37	21	14414855	14414855	+	RNA	SNP	A	G	G	rs141732548	by1000genomes	TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr21:14414855A>G	uc002yiy.3	+	2		c.292A>G			C21orf99_uc002yja.3_RNA					Homo sapiens C21orf99 protein (C21orf99) mRNA, complete cds.												0						GCCAATGGCCATGCAGAAGTA	0.448000													5	43					0	0	8.12818e-05	0	0
MEI1	150365	broad.mit.edu	37	22	42172254	42172254	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr22:42172254G>A	uc003baz.1	+	21	2718	c.2693G>A	c.(2692-2694)GGG>GAG	p.G898E	WBP2NL_uc011ape.1_Intron|LOC339674_uc003bba.1_Intron|MEI1_uc011apd.1_RNA|MEI1_uc003bbb.1_Missense_Mutation_p.G284E|MEI1_uc003bbc.1_Missense_Mutation_p.G266E|MEI1_uc010gym.1_Missense_Mutation_p.G266E|MEI1_uc003bbd.1_Missense_Mutation_p.G141E|MEI1_uc010gyn.1_RNA|MEI1_uc003bbe.1_RNA	NM_152513	NP_689726	Q5TIA1	MEI1_HUMAN	meiosis defective 1	898							binding			central_nervous_system(1)|skin(1)	2						GTGGAGCATGGGGCATCCCCA	0.567000													16	47					0	0	5.01169e-05	0	0
FANCD2	2177	broad.mit.edu	37	3	10081425	10081425	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr3:10081425G>C	uc003buw.2	+	9	669	c.591G>C	c.(589-591)ATG>ATC	p.M197I	FANCD2_uc003bux.1_Missense_Mutation_p.M197I|FANCD2_uc003buy.1_Missense_Mutation_p.M197I|FANCD2_uc003buv.2_Missense_Mutation_p.M197I	NM_033084	NP_149075	Q9BXW9	FACD2_HUMAN	Fanconi anemia complementation group D2 isoform	197	Interaction with FANCE.				DNA repair|response to gamma radiation	nucleoplasm	protein binding|protein binding			central_nervous_system(2)|ovary(1)|skin(1)	4				OV - Ovarian serous cystadenocarcinoma(96;0.148)		CCAAGATCATGCAGCTGATCA	0.488000			D|Mis|N|F			AML|leukemia		Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				16	47					0	0	5.01169e-05	0	0
UPK1B	7348	broad.mit.edu	37	3	118906786	118906786	+	Silent	SNP	A	G	G			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr3:118906786A>G	uc003ecc.2	+	3	323	c.234A>G	c.(232-234)GTA>GTG	p.V78V	UPK1B_uc011bix.1_5'UTR|UPK1B_uc003ecd.2_Silent_p.V78V	NM_006952	NP_008883	O75841	UPK1B_HUMAN	uroplakin 1B	78	Helical; (Potential).				epithelial cell differentiation	integral to membrane	structural molecule activity				0				GBM - Glioblastoma multiforme(114;0.222)		TAGGCATTGTAGGCATCATGA	0.483000													3	85					0	0	6.4e-05	0	0
DZIP1L	199221	broad.mit.edu	37	3	137822671	137822672	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr3:137822671_137822672CG>AT	uc003erq.2	-	2	505_506	c.142_143CG>AT	c.(142-144)CGG>ATG	p.R48M	DZIP1L_uc003err.1_Missense_Mutation_p.R48M	NM_173543	NP_775814	Q8IYY4	DZI1L_HUMAN	DAZ interacting protein 1-like	48						intracellular	zinc ion binding			ovary(1)|pancreas(1)	2						ATCCAGTTCCCGGGCCACGCGG	0.599000													8	244					0	0	6.4e-05	0	0
F2RL1	2150	broad.mit.edu	37	5	76128862	76128863	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr5:76128862_76128863GG>TT	uc003keo.2	+	2	605_606	c.430_431GG>TT	c.(430-432)GGG>TTG	p.G144L		NM_005242	NP_005233	P55085	PAR2_HUMAN	coagulation factor II (thrombin) receptor-like 1	144	Extracellular (Potential).				blood coagulation|elevation of cytosolic calcium ion concentration|positive regulation of leukocyte chemotaxis|positive regulation of positive chemotaxis|regulation of blood coagulation	Golgi apparatus|integral to plasma membrane	receptor binding|thrombin receptor activity			central_nervous_system(1)	1		all_lung(232;0.000414)|Lung NSC(167;0.0011)|Ovarian(174;0.0129)|Prostate(461;0.11)		OV - Ovarian serous cystadenocarcinoma(54;7.7e-51)|Epithelial(54;2.77e-45)|all cancers(79;3.47e-41)		CTGGATTTATGGGGAAGCTCTT	0.455000													12	829					0	0	6.4e-05	0	0
PCDHB16	57717	broad.mit.edu	37	5	140564441	140564441	+	Silent	SNP	G	A	A			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr5:140564441G>A	uc003liv.2	+	1	3462	c.2307G>A	c.(2305-2307)CCG>CCA	p.P769P	PCDHB9_uc003liw.1_5'Flank	NM_020957	NP_066008	Q9NRJ7	PCDBG_HUMAN	protocadherin beta 16 precursor	769	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TCCTGAAGCCGATTATCCCCA	0.458000													17	47					0	0	5.01169e-05	0	0
PCDHGA3	56112	broad.mit.edu	37	5	140724807	140724807	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr5:140724807C>T	uc003ljm.1	+	1	1207	c.1207C>T	c.(1207-1209)CGC>TGC	p.R403C	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc010jfx.1_Missense_Mutation_p.R163C|PCDHGA3_uc011dap.1_Missense_Mutation_p.R403C	NM_018916	NP_061739	Q9Y5H0	PCDG3_HUMAN	protocadherin gamma subfamily A, 3 isoform 1	403	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCAATATTACCGCTTAGTGAC	0.468000													20	44					0	0	0.000175454	0	0
SLC6A7	6534	broad.mit.edu	37	5	149581914	149581914	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr5:149581914G>C	uc003lrr.2	+	7	1234	c.863G>C	c.(862-864)TGG>TCG	p.W288S		NM_014228	NP_055043	Q99884	SC6A7_HUMAN	solute carrier family 6, member 7	288						integral to plasma membrane|membrane fraction	neurotransmitter:sodium symporter activity|proline:sodium symporter activity				0		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)		L-Proline(DB00172)	GCACAGGTGTGGATTGAAGCT	0.547000													34	76					0	0	0.000159656	0	0
FAM71B	153745	broad.mit.edu	37	5	156589499	156589500	+	Nonsense_Mutation	DNP	CG	AT	AT	rs148633922		TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr5:156589499_156589500CG>AT	uc003lwn.2	-	2	1876_1877	c.1776_1777CG>AT	c.(1774-1779)TCCGAG>TCATAG	p.E593*		NM_130899	NP_570969	Q8TC56	FA71B_HUMAN	family with sequence similarity 71, member B	593						nucleus				ovary(4)|pancreas(1)|skin(1)	6	Renal(175;0.00212)	Medulloblastoma(196;0.0523)|all_neural(177;0.21)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			TCCGTCTTCTCGGATGTCATAG	0.515000													11	607					0	0	6.4e-05	0	0
GPRIN1	114787	broad.mit.edu	37	5	176024747	176024747	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr5:176024747C>G	uc003meo.1	-	2	2264	c.2089G>C	c.(2089-2091)GCA>CCA	p.A697P		NM_052899	NP_443131	Q7Z2K8	GRIN1_HUMAN	G protein-regulated inducer of neurite outgrowth	697						growth cone|plasma membrane				ovary(2)	2	all_cancers(89;0.00263)|Renal(175;0.000269)|Lung NSC(126;0.00902)|all_lung(126;0.0142)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CTGGAAGGTGCAGAGTCGGCT	0.597000													12	36					0	0	0.00010058	0	0
BAT3	7917	broad.mit.edu	37	6	31608220	31608221	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr6:31608220_31608221CG>AT	uc003nvg.3	-	22	3303_3304	c.2989_2990CG>AT	c.(2989-2991)CGG>ATG	p.R997M	BAT3_uc003nvf.3_Missense_Mutation_p.R991M|BAT3_uc003nvh.3_Missense_Mutation_p.R991M|BAT3_uc003nvi.3_Missense_Mutation_p.R991M|BAT3_uc011dnw.1_Missense_Mutation_p.R991M|BAT3_uc011dnx.1_Intron	NM_004639	NP_004630	P46379	BAG6_HUMAN	HLA-B associated transcript-3 isoform a	997					apoptosis in response to endoplasmic reticulum stress|brain development|cell differentiation|chromatin modification|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|embryo development|internal peptidyl-lysine acetylation|kidney development|lung development|negative regulation of proteasomal ubiquitin-dependent protein catabolic process|protein stabilization|spermatogenesis|synaptonemal complex assembly|tail-anchored membrane protein insertion into ER membrane|transport|ubiquitin-dependent protein catabolic process	BAT3 complex|nucleus	polyubiquitin binding|proteasome binding|ribosome binding				0						CTGTTCATCCCGGGAGCCCCCC	0.599000													15	748					0	0	6.4e-05	0	0
BAT3	7917	broad.mit.edu	37	6	31612966	31612967	+	Nonsense_Mutation	DNP	CC	AA	AA			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr6:31612966_31612967CC>AA	uc003nvg.3	-	10	1457_1458	c.1143_1144GG>TT	c.(1141-1146)GTGGGA>GTTTGA	p.G382*	BAT3_uc003nvf.3_Nonsense_Mutation_p.G376*|BAT3_uc003nvh.3_Nonsense_Mutation_p.G376*|BAT3_uc003nvi.3_Nonsense_Mutation_p.G376*|BAT3_uc011dnw.1_Nonsense_Mutation_p.G376*|BAT3_uc011dnx.1_Nonsense_Mutation_p.G376*|BAT3_uc003nvj.1_Nonsense_Mutation_p.G376*	NM_004639	NP_004630	P46379	BAG6_HUMAN	HLA-B associated transcript-3 isoform a	382	4 X 29 AA approximate repeats.				apoptosis in response to endoplasmic reticulum stress|brain development|cell differentiation|chromatin modification|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|embryo development|internal peptidyl-lysine acetylation|kidney development|lung development|negative regulation of proteasomal ubiquitin-dependent protein catabolic process|protein stabilization|spermatogenesis|synaptonemal complex assembly|tail-anchored membrane protein insertion into ER membrane|transport|ubiquitin-dependent protein catabolic process	BAT3 complex|nucleus	polyubiquitin binding|proteasome binding|ribosome binding				0						ACAGTGGTTCCCACATTGATCT	0.525000													11	523					0	0	6.4e-05	0	0
LY6G5C	80741	broad.mit.edu	37	6	31647023	31647024	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr6:31647023_31647024CC>AA	uc003nvu.1	-	2	134_135	c.134_135GG>TT	c.(133-135)TGG>TTT	p.W45F	LY6G5C_uc003nvw.1_RNA|LY6G5C_uc010jtb.1_RNA	NM_025262	NP_079538	Q5SRR4	LY65C_HUMAN	lymphocyte antigen 6 complex G5C	48						extracellular region					0						GAGGGGGTTCCCAATTGACAGG	0.540000													10	497					0	0	6.4e-05	0	0
VARS	7407	broad.mit.edu	37	6	31752209	31752210	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr6:31752209_31752210CC>AA	uc003nxe.2	-	12	1960_1961	c.1537_1538GG>TT	c.(1537-1539)GGG>TTG	p.G513L	VARS_uc011doi.1_RNA	NM_006295	NP_006286	P26640	SYVC_HUMAN	valyl-tRNA synthetase	513					translational elongation|valyl-tRNA aminoacylation	cytosol	ATP binding|protein binding|valine-tRNA ligase activity			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3					L-Valine(DB00161)	CACGAGGACCCCGAACTCCACC	0.594000													14	743					0	0	6.4e-05	0	0
DOM3Z	1797	broad.mit.edu	37	6	31938736	31938737	+	Missense_Mutation	DNP	CG	AT	AT	rs144228194	byFrequency	TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr6:31938736_31938737CG>AT	uc003nyo.1	-	2	1078_1079	c.544_545CG>AT	c.(544-546)CGG>ATG	p.R182M	DOM3Z_uc003nyp.1_Missense_Mutation_p.R182M|DOM3Z_uc003nyq.1_Translation_Start_Site|DOM3Z_uc003nyr.1_Missense_Mutation_p.R182M|DOM3Z_uc003nys.1_Missense_Mutation_p.R182M|DOM3Z_uc010jtl.1_3'UTR|STK19_uc003nyt.2_5'Flank|STK19_uc011dow.1_5'Flank|STK19_uc011dox.1_5'Flank|STK19_uc003nyv.2_5'Flank|STK19_uc003nyw.2_5'Flank|STK19_uc010jtn.1_5'Flank	NM_005510	NP_005501	O77932	DOM3Z_HUMAN	DOM-3 homolog Z	182							identical protein binding|metal ion binding|nucleotide binding				0						CATAAGCTCCCGGAGGAGCGGT	0.594000													13	713					0	0	6.4e-05	0	0
ITPR3	3710	broad.mit.edu	37	6	33639958	33639958	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr6:33639958G>T	uc011drk.1	+	22	3100	c.2881G>T	c.(2881-2883)GAC>TAC	p.D961Y		NM_002224	NP_002215	Q14573	ITPR3_HUMAN	inositol 1,4,5-triphosphate receptor, type 3	961	Cytoplasmic (Potential).				activation of phospholipase C activity|calcium ion transport into cytosol|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|nerve growth factor receptor signaling pathway|platelet activation|protein heterooligomerization|protein homooligomerization|regulation of insulin secretion|response to calcium ion	apical part of cell|brush border|endoplasmic reticulum membrane|integral to plasma membrane|myelin sheath|neuronal cell body|nuclear outer membrane|platelet dense tubular network membrane	inositol 1,3,4,5 tetrakisphosphate binding|inositol 1,4,5 trisphosphate binding|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|inositol hexakisphosphate binding|intracellular ligand-gated calcium channel activity|protein binding			ovary(6)|lung(5)|central_nervous_system(5)|breast(2)|kidney(1)	19						GGAGAATGAGGACATTGTGGT	0.592000													17	91					5.26018e-13	2.36861e-11	0.000229342	1	0
DEF6	50619	broad.mit.edu	37	6	35289033	35289033	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr6:35289033C>T	uc003okk.2	+	11	1781	c.1742C>T	c.(1741-1743)TCC>TTC	p.S581F	DEF6_uc010jvs.2_Missense_Mutation_p.S556F|DEF6_uc010jvt.2_Missense_Mutation_p.S326F	NM_022047	NP_071330	Q9H4E7	DEFI6_HUMAN	differentially expressed in FDCP 6 homolog	581						cytoplasm|nucleus|plasma membrane					0						CGTGACTCCTCCCTAAAGCGC	0.617000													39	149					0	0	5.1965e-05	0	0
HIBADH	11112	broad.mit.edu	37	7	27689193	27689194	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr7:27689193_27689194CC>AA	uc003szf.2	-	2	345_346	c.150_151GG>TT	c.(148-153)ATGGGG>ATTTGG	p.50_51MG>IW	HIBADH_uc003szg.2_Missense_Mutation_p.1_2MG>IW|HIBADH_uc003szh.2_Intron|HIBADH_uc003szi.2_Missense_Mutation_p.1_2MG>IW	NM_152740	NP_689953	P31937	3HIDH_HUMAN	3-hydroxyisobutyrate dehydrogenase precursor	50_51	NAD.				branched chain family amino acid catabolic process|pentose-phosphate shunt|valine metabolic process	mitochondrial matrix	3-hydroxyisobutyrate dehydrogenase activity|NAD binding|phosphogluconate dehydrogenase (decarboxylating) activity			ovary(2)	2			GBM - Glioblastoma multiforme(3;0.0368)		NADH(DB00157)	ATTGGATTCCCCATGTTGCCCA	0.391000													12	690					0	0	6.4e-05	0	0
ANLN	54443	broad.mit.edu	37	7	36438873	36438874	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr7:36438873_36438874CC>AA	uc003tff.2	+	3	562_563	c.358_359CC>AA	c.(358-360)CCG>AAG	p.P120K	ANLN_uc011kaz.1_Intron|ANLN_uc003tfg.2_Missense_Mutation_p.P120K|ANLN_uc010kxe.2_Missense_Mutation_p.P120K	NM_018685	NP_061155	Q9NQW6	ANLN_HUMAN	anillin, actin binding protein	120	Nuclear localization.|Interaction with CD2AP.				cytokinesis|mitosis|regulation of exit from mitosis|septin ring assembly	actomyosin contractile ring|nucleus	actin binding			ovary(2)|skin(1)	3						TGTTGCTGTCCCGGCATCACTG	0.505000													6	45					0	0	6.4e-05	0	0
TXNDC3	51314	broad.mit.edu	37	7	37924779	37924779	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr7:37924779A>G	uc003tfn.2	+	14	1544	c.1172A>G	c.(1171-1173)GAC>GGC	p.D391G		NM_016616	NP_057700	Q8N427	TXND3_HUMAN	thioredoxin domain containing 3	391	NDK 2.				cell differentiation|cell redox homeostasis|CTP biosynthetic process|GTP biosynthetic process|multicellular organismal development|spermatogenesis|UTP biosynthetic process	cytoplasm|microtubule cytoskeleton	ATP binding|nucleoside diphosphate kinase activity			ovary(1)|breast(1)|central_nervous_system(1)	3						TTATTGAGAGACAATGGCTTG	0.378000									Kartagener_syndrome				8	35					0	0	2.17888e-05	0	0
SAMD9L	219285	broad.mit.edu	37	7	92762797	92762797	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr7:92762797C>T	uc003umh.1	-	5	3704	c.2488G>A	c.(2488-2490)GAA>AAA	p.E830K	SAMD9L_uc003umj.1_Missense_Mutation_p.E830K|SAMD9L_uc003umi.1_Missense_Mutation_p.E830K|SAMD9L_uc010lfb.1_Missense_Mutation_p.E830K|SAMD9L_uc003umk.1_Missense_Mutation_p.E830K|SAMD9L_uc010lfc.1_Missense_Mutation_p.E830K|SAMD9L_uc010lfd.1_Missense_Mutation_p.E830K|SAMD9L_uc011khx.1_Intron	NM_152703	NP_689916	Q8IVG5	SAM9L_HUMAN	sterile alpha motif domain containing 9-like	830										ovary(4)	4	all_cancers(62;4.15e-11)|all_epithelial(64;2.29e-10)|Breast(17;0.000675)|Lung NSC(181;0.0755)|all_lung(186;0.0989)		STAD - Stomach adenocarcinoma(171;0.000302)			AATGTTTTTTCATATCGCAAA	0.363000													24	123					0	0	3.10358e-05	0	0
Unknown	0	broad.mit.edu	37	7	100551902	100551903	+	RNA	DNP	GG	TT	TT			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr7:100551902_100551903GG>TT	uc003uxk.1	+	1		c.1153_1154GG>TT			uc003uxl.1_Missense_Mutation_p.R118I					Homo sapiens MUC3B mRNA for intestinal mucin, partial cds.																		TCTTTCACTAGGGGAAGTACGT	0.436000													13	805					0	0	6.4e-05	0	0
ZNF777	27153	broad.mit.edu	37	7	149128939	149128939	+	Nonsense_Mutation	SNP	G	T	T			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr7:149128939G>T	uc003wfv.2	-	6	2587	c.2424C>A	c.(2422-2424)TGC>TGA	p.C808*		NM_015694	NP_056509	Q9ULD5	ZN777_HUMAN	zinc finger protein 777	Error:Variant_position_missing_in_Q9ULD5_after_alignment					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1	Melanoma(164;0.165)		OV - Ovarian serous cystadenocarcinoma(82;0.00358)			CGCAGTGCGTGCAGGGGTAGG	0.582000													8	27					2.74318e-10	1.2117e-08	2.17888e-05	1	0
CDK5	1020	broad.mit.edu	37	7	150752177	150752177	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr7:150752177G>C	uc003wir.1	-	9	648	c.587C>G	c.(586-588)GCC>GGC	p.A196G	CDK5_uc003wis.1_Missense_Mutation_p.A164G	NM_004935	NP_004926	Q00535	CDK5_HUMAN	cyclin-dependent kinase 5 isoform 1	196	Protein kinase.				activation of pro-apoptotic gene products|blood coagulation|cell division|cell proliferation|embryo development|negative regulation of transcription, DNA-dependent|positive regulation of neuron apoptosis	axon|cytosol|dendrite|growth cone|lamellipodium|membrane|neuromuscular junction|neuronal cell body	acetylcholine receptor activator activity|ATP binding|cyclin-dependent protein kinase activity|ErbB-2 class receptor binding|ErbB-3 class receptor binding|tau-protein kinase activity			lung(1)|central_nervous_system(1)	2		Breast(660;0.159)|Ovarian(593;0.182)	OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)|LUSC - Lung squamous cell carcinoma(290;0.008)|Lung(243;0.00942)|BRCA - Breast invasive adenocarcinoma(188;0.242)		CCCAGCATTGGCCAGCTCTGG	0.582000													14	52					0	0	3.45872e-05	0	0
ST18	9705	broad.mit.edu	37	8	53077718	53077718	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr8:53077718G>T	uc003xqz.2	-	7	1428	c.1272C>A	c.(1270-1272)AAC>AAA	p.N424K	ST18_uc011ldq.1_Missense_Mutation_p.N71K|ST18_uc011ldr.1_Missense_Mutation_p.N389K|ST18_uc011lds.1_Missense_Mutation_p.N329K|ST18_uc003xra.2_Missense_Mutation_p.N424K|ST18_uc003xrb.2_Missense_Mutation_p.N424K	NM_014682	NP_055497	O60284	ST18_HUMAN	suppression of tumorigenicity 18	424	C2HC-type 2.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|skin(1)	5		Lung NSC(129;0.131)|all_epithelial(80;0.217)|all_lung(136;0.229)				TGCGGTTGCTGTTCACATGAC	0.403000													60	427					2.67592e-24	1.2288e-22	0.000147903	1	0
ADHFE1	137872	broad.mit.edu	37	8	67372548	67372548	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr8:67372548G>A	uc003xwb.3	+	13	1202	c.1168G>A	c.(1168-1170)GAC>AAC	p.D390N	ADHFE1_uc003xwd.3_RNA|ADHFE1_uc003xwc.3_Missense_Mutation_p.D342N|ADHFE1_uc003xwe.3_RNA|ADHFE1_uc003xwf.3_RNA|ADHFE1_uc011les.1_Missense_Mutation_p.D320N	NM_144650	NP_653251	Q8IWW8	HOT_HUMAN	alcohol dehydrogenase, iron containing, 1	390					2-oxoglutarate metabolic process|molecular hydrogen transport	mitochondrial matrix	hydroxyacid-oxoacid transhydrogenase activity|metal ion binding			ovary(1)|lung(1)|breast(1)|skin(1)	4		Lung NSC(129;0.197)	Epithelial(68;0.0321)|all cancers(69;0.0751)|BRCA - Breast invasive adenocarcinoma(89;0.0855)|OV - Ovarian serous cystadenocarcinoma(28;0.226)			TCTAGGAGCCGACACCCGCAC	0.527000											OREG0018808	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	22	203					0	0	4.16121e-05	0	0
ZFHX4	79776	broad.mit.edu	37	8	77767823	77767823	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr8:77767823C>G	uc003yav.2	+	10	8918	c.8531C>G	c.(8530-8532)ACA>AGA	p.T2844R	ZFHX4_uc003yau.1_Missense_Mutation_p.T2889R|ZFHX4_uc003yaw.1_Missense_Mutation_p.T2844R	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	2844						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			TTTTACATCACAGATGACCCG	0.502000										HNSCC(33;0.089)			11	95					0	0	3.86212e-05	0	0
INTS8	55656	broad.mit.edu	37	8	95862268	95862269	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr8:95862268_95862269CC>AA	uc003yhb.2	+	12	1582_1583	c.1456_1457CC>AA	c.(1456-1458)CCT>AAT	p.P486N	INTS8_uc003yha.1_Missense_Mutation_p.P486N|INTS8_uc011lgq.1_RNA|INTS8_uc011lgr.1_RNA|INTS8_uc010mba.2_Missense_Mutation_p.P313N	NM_017864	NP_060334	Q75QN2	INT8_HUMAN	integrator complex subunit 8	486					snRNA processing	integrator complex	protein binding				0	Breast(36;1.05e-06)					GAAGAGATCCCCTAGAGTAAAT	0.391000													14	783					0	0	6.4e-05	0	0
KCNS2	3788	broad.mit.edu	37	8	99441459	99441459	+	Missense_Mutation	SNP	C	T	T	rs149723156		TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr8:99441459C>T	uc003yin.2	+	2	1602	c.1252C>T	c.(1252-1254)CGG>TGG	p.R418W		NM_020697	NP_065748	Q9ULS6	KCNS2_HUMAN	potassium voltage-gated channel,	418	Cytoplasmic (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)	1	Breast(36;2.4e-06)		OV - Ovarian serous cystadenocarcinoma(57;0.0448)			CCACTTTTACCGGCGCCAAAA	0.517000													28	214					0	0	0.000147802	0	0
RIMS2	9699	broad.mit.edu	37	8	104922418	104922419	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr8:104922418_104922419CC>AA	uc003yls.2	+	3	1256_1257	c.1015_1016CC>AA	c.(1015-1017)CCA>AAA	p.P339K	RIMS2_uc003ylp.2_Missense_Mutation_p.P561K|RIMS2_uc003ylw.2_Missense_Mutation_p.P369K|RIMS2_uc003ylq.2_Missense_Mutation_p.P369K|RIMS2_uc003ylr.2_Intron|RIMS2_uc003ylt.2_5'Flank	NM_014677	NP_055492	Q9UQ26	RIMS2_HUMAN	regulating synaptic membrane exocytosis 2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					intracellular protein transport	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(6)|lung(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	15			OV - Ovarian serous cystadenocarcinoma(57;7.7e-07)|STAD - Stomach adenocarcinoma(118;0.229)			TGAGGCATCCCCAATGTCTTTG	0.386000										HNSCC(12;0.0054)			10	247					0	0	6.4e-05	0	0
TRIB1	10221	broad.mit.edu	37	8	126448626	126448627	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr8:126448626_126448627CG>AT	uc003yrx.2	+	3	1614_1615	c.1032_1033CG>AT	c.(1030-1035)CCCGGG>CCATGG	p.G345W	TRIB1_uc011lis.1_Missense_Mutation_p.G179W|TRIB1_uc010mdn.2_Missense_Mutation_p.G114W	NM_025195	NP_079471	Q96RU8	TRIB1_HUMAN	G-protein-coupled receptor induced protein	345					JNK cascade|negative regulation of lipopolysaccharide-mediated signaling pathway|negative regulation of protein kinase activity|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of smooth muscle cell migration|negative regulation of smooth muscle cell proliferation|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|regulation of MAP kinase activity|response to lipopolysaccharide	cytoplasm|nucleus	ATP binding|mitogen-activated protein kinase kinase binding|protein kinase activity|protein kinase inhibitor activity|transcription factor binding|ubiquitin protein ligase binding|ubiquitin-protein ligase regulator activity			lung(1)	1	all_hematologic(1;4.97e-05)|Ovarian(258;0.00167)|all_neural(195;0.00294)|Hepatocellular(40;0.108)		STAD - Stomach adenocarcinoma(47;0.000918)			TCTTGGAACCCGGGTACATCGA	0.540000													10	658					0	0	6.4e-05	0	0
ZFP41	286128	broad.mit.edu	37	8	144332324	144332324	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr8:144332324G>A	uc003yxw.2	+	2	669	c.311G>A	c.(310-312)CGC>CAC	p.R104H	ZFP41_uc003yxv.2_RNA	NM_173832	NP_776193	Q8N8Y5	ZFP41_HUMAN	zinc finger protein 41 homolog	104	C2H2-type 1.				cell differentiation|multicellular organismal development|regulation of transcription, DNA-dependent|spermatogenesis|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	all_cancers(97;1.01e-10)|all_epithelial(106;4.6e-09)|Lung NSC(106;0.000167)|all_lung(105;0.000459)|Ovarian(258;0.0212)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.156)|Colorectal(110;0.173)			GACCACATTCGCCATCAGAGG	0.547000													16	150					0	0	5.01169e-05	0	0
SMC1A	8243	broad.mit.edu	37	X	53438820	53438820	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chrX:53438820G>C	uc004dsg.2	-	7	1214	c.1145C>G	c.(1144-1146)GCC>GGC	p.A382G	SMC1A_uc011moe.1_Missense_Mutation_p.A360G|SMC1A_uc011mof.1_Missense_Mutation_p.A148G	NM_006306	NP_006297	Q14683	SMC1A_HUMAN	structural maintenance of chromosomes 1A	382	Potential.				cell cycle checkpoint|cell division|DNA repair|meiosis|mitotic metaphase/anaphase transition|mitotic prometaphase|mitotic sister chromatid cohesion|mitotic spindle organization|negative regulation of DNA endoreduplication|nuclear mRNA splicing, via spliceosome|response to radiation|signal transduction in response to DNA damage	cohesin core heterodimer|condensed chromosome kinetochore|condensed nuclear chromosome|cytoplasm|meiotic cohesin complex|nucleoplasm	ATP binding|chromatin binding|microtubule motor activity|protein heterodimerization activity			ovary(5)|central_nervous_system(1)	6						TCTCTTGCTGGCTTCTTCTTT	0.527000													15	3					0	0	0.000219431	0	0
LRRIQ3	127255	broad.mit.edu	37	1	74575212	74575213	+	Frame_Shift_Ins	INS	-	T	T			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr1:74575212_74575213insT	uc001dfy.3	-	5	924_925	c.732_733insA	c.(730-735)AAACAGfs	p.K244fs	LRRIQ3_uc001dfz.3_RNA	NM_001105659	NP_001099129	A6PVS8	LRIQ3_HUMAN	leucine-rich repeats and IQ motif containing 3	244_245				QQEKII -> TAGKNY (in Ref. 1; BAD18621).						ovary(2)	2						TTTTCCTGCTGTTTTTTTTTGT	0.327													9	93	---	---	---	---					
CYP26C1	340665	broad.mit.edu	37	10	94828268	94828268	+	Frame_Shift_Del	DEL	C	-	-			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr10:94828268delC	uc010qns.1	+	6	1383	c.1383delC	c.(1381-1383)GGCfs	p.G461fs	CYP26C1_uc009xud.2_RNA	NM_183374	NP_899230	Q6V0L0	CP26C_HUMAN	cytochrome P450, family 26, subfamily C,	461					anterior/posterior pattern formation|central nervous system development|negative regulation of retinoic acid receptor signaling pathway|neural crest cell development|organelle fusion|retinoic acid catabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	electron carrier activity|heme binding|retinoic acid 4-hydroxylase activity|retinoic acid binding			central_nervous_system(1)	1		Colorectal(252;0.122)				GCTGCCTCGGCCAGGAGCTGG	0.706													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	11	43283606	43283606	+	RNA	DEL	A	-	-			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr11:43283606delA	uc001mxe.1	-	2		c.1330delT								Homo sapiens cDNA FLJ44864 fis, clone BRALZ2013621, moderately similar to Heterogeneous nuclear ribonucleoprotein K.																		AAGCAAATGTAAAAAAAAAAA	0.388													2	4	---	---	---	---					
SFRS2IP	9169	broad.mit.edu	37	12	46318575	46318577	+	In_Frame_Del	DEL	GGT	-	-			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr12:46318575_46318577delGGT	uc001rox.2	-	12	4127_4129	c.3840_3842delACC	c.(3838-3843)CCACCC>CCC	p.1280_1281PP>P	SFRS2IP_uc001row.2_In_Frame_Del_p.965_966PP>P	NM_004719	NP_004710	Q99590	SCAFB_HUMAN	splicing factor, arginine/serine-rich 2,	1280_1281	Pro-rich.				spliceosome assembly	nucleus	protein binding|zinc ion binding				0	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.209)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.1)		TGGGGGAGGGGGTGGTGGTGGTG	0.483													11	403	---	---	---	---					
LRRC37A2	474170	broad.mit.edu	37	17	44626186	44626186	+	Frame_Shift_Del	DEL	G	-	-			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr17:44626186delG	uc002ikn.1	+	9	3684	c.3681delG	c.(3679-3681)GCGfs	p.A1227fs	ARL17A_uc002iko.3_Intron|LRRC37A2_uc002ikq.1_Frame_Shift_Del_p.A188fs|LRRC37A2_uc010dax.1_Frame_Shift_Del_p.A157fs	NM_001006607	NP_001006608	A6NM11	L37A2_HUMAN	c114 SLIT-like testicular protein precursor	1227	Extracellular (Potential).					integral to membrane					0		Melanoma(429;0.211)		BRCA - Breast invasive adenocarcinoma(366;0.232)		AGAAGTTAGCGGGAAACGCCG	0.592													23	184	---	---	---	---					
SAPS1	22870	broad.mit.edu	37	19	55748038	55748039	+	Frame_Shift_Ins	INS	-	C	C			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr19:55748038_55748039insC	uc002qjw.3	-	17	2202_2203	c.1960_1961insG	c.(1960-1962)GCCfs	p.A654fs	SAPS1_uc002qjv.2_Frame_Shift_Ins_p.A716fs	NM_014931	NP_055746	Q9UPN7	PP6R1_HUMAN	SAPS domain family, member 1	654	Glu-rich.				regulation of phosphoprotein phosphatase activity	cytoplasm	protein phosphatase binding				0		Renal(1328;0.245)	BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.0449)		GCCCAGACGGGCCCCCCTGGCC	0.649													7	21	---	---	---	---					
POU4F2	5458	broad.mit.edu	37	4	147560457	147560458	+	In_Frame_Ins	INS	-	GGC	GGC	rs67907220		TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr4:147560457_147560458insGGC	uc003ikv.2	+	1	413_414	c.165_166insGGC	c.(163-168)insGGC	p.68_69insG		NM_004575	NP_004566	Q12837	PO4F2_HUMAN	Brn3b POU domain transcription factor	68_69					estrogen receptor signaling pathway|MAPKKK cascade|negative regulation of transcription from RNA polymerase II promoter	nuclear speck	RNA polymerase II core promoter proximal region sequence-specific DNA binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription			breast(1)	1	all_hematologic(180;0.151)					ACGCTggtggtggcggcggcgg	0.386													2	4	---	---	---	---					
PEX1	5189	broad.mit.edu	37	7	92146721	92146721	+	Frame_Shift_Del	DEL	T	-	-			TCGA-D3-A1Q1-06A-21D-A196-08	TCGA-D3-A1Q1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0583407-712d-46f3-8c4e-4eeaa0149087	628778f0-a013-498a-938a-bea1361add23	g.chr7:92146721delT	uc003uly.2	-	5	1204	c.1108delA	c.(1108-1110)ATTfs	p.I370fs	PEX1_uc011khr.1_Frame_Shift_Del_p.I162fs|PEX1_uc010ley.2_Frame_Shift_Del_p.I370fs|PEX1_uc011khs.1_Intron|PEX1_uc011kht.1_RNA	NM_000466	NP_000457	O43933	PEX1_HUMAN	peroxin1	370					microtubule-based peroxisome localization|protein import into peroxisome matrix	cytosol|nucleus|peroxisomal membrane	ATP binding|ATPase activity, coupled|protein C-terminus binding|protein complex binding			ovary(1)|central_nervous_system(1)	2	all_cancers(62;9.35e-11)|all_epithelial(64;4.59e-10)|Breast(17;0.00201)|all_lung(186;0.0438)|Lung NSC(181;0.0592)	Breast(660;0.000932)|all_neural(109;0.00391)|Myeloproliferative disorder(862;0.0122)|Ovarian(593;0.023)|Medulloblastoma(109;0.123)	GBM - Glioblastoma multiforme(5;4.06e-06)|STAD - Stomach adenocarcinoma(4;4.51e-05)|all cancers(6;5.32e-05)|LUSC - Lung squamous cell carcinoma(200;0.225)|Lung(22;0.23)			TCTGACCTAATTTTTTTTTGA	0.353													7	217	---	---	---	---					
