Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
MIB2	142678	broad.mit.edu	37	1	1560202	1560202	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:1560202C>T	uc001agg.2	+	5	748	c.621C>T	c.(619-621)CTC>CTT	p.L207L	MIB2_uc001agh.2_Silent_p.L193L|MIB2_uc001agi.2_Silent_p.L207L|MIB2_uc001agj.2_Silent_p.L48L|MIB2_uc001agk.2_Silent_p.L207L|MIB2_uc001agl.1_Silent_p.L163L|MIB2_uc001agm.2_Silent_p.L149L|MIB2_uc010nyq.1_Silent_p.L163L|MIB2_uc009vkh.2_Silent_p.L48L|MIB2_uc001agn.2_5'Flank	NM_080875	NP_543151	Q96AX9	MIB2_HUMAN	mindbomb homolog 2	207	MIB/HERC2 2.				Notch signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade	endosome	actin binding|signal transducer activity|ubiquitin-protein ligase activity|zinc ion binding				0	all_cancers(77;0.000708)|all_epithelial(69;0.000943)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;6.04e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Lung SC(97;0.217)		Epithelial(90;5.26e-37)|OV - Ovarian serous cystadenocarcinoma(86;2.54e-23)|GBM - Glioblastoma multiforme(42;9e-08)|Colorectal(212;0.000155)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00227)|STAD - Stomach adenocarcinoma(132;0.00644)|BRCA - Breast invasive adenocarcinoma(365;0.00786)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.199)		GCCAGGGCCTCCCGAGGATCC	0.602													9	27					0	0	0.000442599	0	0
PANK4	55229	broad.mit.edu	37	1	2452592	2452592	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:2452592C>T	uc001ajm.1	-	3	379	c.370G>A	c.(370-372)GGG>AGG	p.G124R	PANK4_uc010nza.1_Missense_Mutation_p.G124R	NM_018216	NP_060686	Q9NVE7	PANK4_HUMAN	pantothenate kinase 4	124					coenzyme A biosynthetic process	cytoplasm	ATP binding|pantothenate kinase activity			upper_aerodigestive_tract(1)|large_intestine(1)|ovary(1)	3	all_cancers(77;0.000158)|all_epithelial(69;8.01e-05)|all_lung(157;0.0212)|Lung NSC(156;0.0376)|Ovarian(185;0.0634)	all_epithelial(116;3.18e-20)|all_lung(118;1.67e-08)|Lung NSC(185;2.69e-06)|Breast(487;0.00147)|Renal(390;0.00183)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.0847)|Medulloblastoma(700;0.123)		Epithelial(90;1.54e-37)|OV - Ovarian serous cystadenocarcinoma(86;6.95e-23)|GBM - Glioblastoma multiforme(42;2.81e-08)|Colorectal(212;4.25e-05)|COAD - Colon adenocarcinoma(227;0.000196)|Kidney(185;0.000342)|BRCA - Breast invasive adenocarcinoma(365;0.00445)|KIRC - Kidney renal clear cell carcinoma(229;0.00549)|STAD - Stomach adenocarcinoma(132;0.00644)|Lung(427;0.201)		GCCCCGCCCCCGGTCGCCTGG	0.532													30	93					0	0	0.00111076	0	0
PER3	8863	broad.mit.edu	37	1	7890087	7890087	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:7890087C>T	uc001aoo.2	+	18	3228	c.3053C>T	c.(3052-3054)CCA>CTA	p.P1018L	PER3_uc009vmg.1_Missense_Mutation_p.P1026L|PER3_uc009vmh.1_Missense_Mutation_p.P1019L|PER3_uc001aop.2_Missense_Mutation_p.P1027L|PER3_uc010nzw.1_Missense_Mutation_p.P707L	NM_016831	NP_058515	P56645	PER3_HUMAN	period 3	1018	Ser-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	signal transducer activity			ovary(1)|pancreas(1)|skin(1)	3	Ovarian(185;0.0634)|all_lung(157;0.178)	all_epithelial(116;9.35e-21)|all_lung(118;7.57e-07)|Lung NSC(185;4.52e-06)|Renal(390;0.000147)|Breast(487;0.00086)|Colorectal(325;0.000959)|Hepatocellular(190;0.00825)|Ovarian(437;0.0253)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0234)|all cancers(8;8.58e-70)|GBM - Glioblastoma multiforme(8;1.81e-35)|Colorectal(212;2.06e-07)|COAD - Colon adenocarcinoma(227;1.92e-05)|Kidney(185;7.18e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000472)|STAD - Stomach adenocarcinoma(132;0.00118)|KIRC - Kidney renal clear cell carcinoma(229;0.00122)|READ - Rectum adenocarcinoma(331;0.0649)		ATGAAGAATCCATCCCATCCT	0.592													10	44					0	0	0.000673444	0	0
CA6	765	broad.mit.edu	37	1	9034702	9034702	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:9034702T>C	uc001apm.2	+	8	890	c.866T>C	c.(865-867)TTC>TCC	p.F289S	CA6_uc009vmn.2_Missense_Mutation_p.F229S	NM_001215	NP_001206	P23280	CAH6_HUMAN	carbonic anhydrase VI precursor	289					one-carbon metabolic process	extracellular region	carbonate dehydratase activity|zinc ion binding			ovary(2)	2	Ovarian(185;0.112)|all_lung(157;0.143)	all_epithelial(116;1.02e-19)|all_lung(118;3.6e-06)|Lung NSC(185;7.94e-06)|Renal(390;0.000147)|Breast(348;0.00123)|Colorectal(325;0.00205)|Hepatocellular(190;0.00825)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.9e-07)|COAD - Colon adenocarcinoma(227;8.28e-05)|Kidney(185;0.000268)|KIRC - Kidney renal clear cell carcinoma(229;0.000971)|STAD - Stomach adenocarcinoma(132;0.00184)|BRCA - Breast invasive adenocarcinoma(304;0.00192)|READ - Rectum adenocarcinoma(331;0.0649)		GGCTCTGAATTCCAGTTTTAC	0.383													5	18					0	0	0.00198382	0	0
CASZ1	54897	broad.mit.edu	37	1	10713679	10713679	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:10713679G>A	uc001aro.2	-	11	2755	c.2435C>T	c.(2434-2436)TCC>TTC	p.S812F	CASZ1_uc001arp.1_Missense_Mutation_p.S812F|CASZ1_uc009vmx.2_Missense_Mutation_p.S836F	NM_001079843	NP_001073312	Q86V15	CASZ1_HUMAN	castor homolog 1, zinc finger isoform a	812					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			skin(1)	1	Ovarian(185;0.203)|all_lung(157;0.204)	Lung NSC(185;4.96e-06)|all_lung(284;1.22e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00212)|Hepatocellular(190;0.00913)|Ovarian(437;0.0229)|Myeloproliferative disorder(586;0.0255)	STAD - Stomach adenocarcinoma(5;0.0224)	UCEC - Uterine corpus endometrioid carcinoma (279;0.0265)|Colorectal(212;3.54e-08)|COAD - Colon adenocarcinoma(227;9.56e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000219)|Kidney(185;0.00142)|KIRC - Kidney renal clear cell carcinoma(229;0.00381)|READ - Rectum adenocarcinoma(331;0.0419)|STAD - Stomach adenocarcinoma(132;0.0623)		CACAGGCAGGGAGGTGCTCCC	0.711													4	9					0	0	0.00024832	0	0
TNFRSF8	943	broad.mit.edu	37	1	12144548	12144548	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:12144548G>A	uc001atq.2	+	2	313	c.91G>A	c.(91-93)GGA>AGA	p.G31R	TNFRSF8_uc010obc.1_Intron	NM_001243	NP_001234	P28908	TNR8_HUMAN	tumor necrosis factor receptor superfamily,	31	TNFR-Cys 1.|Extracellular (Potential).				cellular response to mechanical stimulus|negative regulation of cell proliferation|positive regulation of apoptosis|positive regulation of TRAIL biosynthetic process|positive regulation of tumor necrosis factor biosynthetic process	cytoplasm|integral to membrane|plasma membrane				skin(2)|ovary(1)|pancreas(1)|central_nervous_system(1)	5	Ovarian(185;0.249)	Lung NSC(185;8.71e-05)|all_lung(284;9.89e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.66e-06)|COAD - Colon adenocarcinoma(227;0.000261)|BRCA - Breast invasive adenocarcinoma(304;0.000304)|Kidney(185;0.000777)|KIRC - Kidney renal clear cell carcinoma(229;0.00261)|STAD - Stomach adenocarcinoma(313;0.0073)|READ - Rectum adenocarcinoma(331;0.0649)		CACCTGTCATGGAAACCCCAG	0.597													10	61					0	0	0.000673444	0	0
VPS13D	55187	broad.mit.edu	37	1	12343419	12343419	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:12343419C>T	uc001atv.2	+	21	5401	c.5260C>T	c.(5260-5262)CAA>TAA	p.Q1754*	VPS13D_uc001atw.2_Nonsense_Mutation_p.Q1754*|VPS13D_uc001atx.2_Nonsense_Mutation_p.Q942*	NM_015378	NP_056193	Q5THJ4	VP13D_HUMAN	vacuolar protein sorting 13D isoform 1	1754					protein localization					ovary(4)|pancreas(1)	5	Ovarian(185;0.249)	Lung NSC(185;4.08e-05)|all_lung(284;4.55e-05)|Renal(390;0.000147)|Colorectal(325;0.00058)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0327)|Colorectal(212;4.63e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000289)|COAD - Colon adenocarcinoma(227;0.000801)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0476)|Lung(427;0.209)		AAAGGAAGTCCAAGACAAGGA	0.478													15	24					0	0	0.000566183	0	0
PRAMEF8	391002	broad.mit.edu	37	1	12980082	12980082	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:12980082G>T	uc001aup.2	+	4	1357	c.1274G>T	c.(1273-1275)TGC>TTC	p.C425F		NM_001012276	NP_001012276	Q5VWM4	PRAM8_HUMAN	PRAME family member 8	425											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		GGTGCTCTCTGCTGGGGGAGA	0.597													12	70					2.35188e-11	1.10637e-10	0.00074312	1	0
PRDM2	7799	broad.mit.edu	37	1	14106634	14106634	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:14106634C>T	uc001avi.2	+	8	3200	c.2344C>T	c.(2344-2346)CCA>TCA	p.P782S	PRDM2_uc001avg.2_Intron|PRDM2_uc001avh.2_Missense_Mutation_p.P782S|PRDM2_uc001avj.2_Intron|PRDM2_uc009vod.1_Missense_Mutation_p.P539S|PRDM2_uc001avk.2_Missense_Mutation_p.P581S|PRDM2_uc009voe.2_Intron|PRDM2_uc009vof.2_Intron	NM_012231	NP_036363	Q13029	PRDM2_HUMAN	retinoblastoma protein-binding zinc finger	782						Golgi apparatus|nucleus	DNA binding|histone-lysine N-methyltransferase activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1	Ovarian(185;0.249)	all_lung(284;2.56e-05)|Lung NSC(185;4.94e-05)|Renal(390;0.000147)|Breast(348;0.000162)|Colorectal(325;0.00058)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)	GBM - Glioblastoma multiforme(2;0.00182)	UCEC - Uterine corpus endometrioid carcinoma (279;0.00224)|Colorectal(212;3.23e-08)|BRCA - Breast invasive adenocarcinoma(304;2.16e-05)|COAD - Colon adenocarcinoma(227;2.53e-05)|Kidney(185;0.000762)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(313;0.00446)|READ - Rectum adenocarcinoma(331;0.0276)|Lung(427;0.145)		CAGCGACTCACCAGCATGGAG	0.463													8	36					0	0	0.000442599	0	0
PRDM2	7799	broad.mit.edu	37	1	14107999	14107999	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:14107999C>T	uc001avi.2	+	8	4565	c.3709C>T	c.(3709-3711)CCC>TCC	p.P1237S	PRDM2_uc001avg.2_Intron|PRDM2_uc001avh.2_Missense_Mutation_p.P1237S|PRDM2_uc001avj.2_Intron|PRDM2_uc001avk.2_Missense_Mutation_p.P1036S|PRDM2_uc009voe.2_Intron|PRDM2_uc009vof.2_Intron	NM_012231	NP_036363	Q13029	PRDM2_HUMAN	retinoblastoma protein-binding zinc finger	1237						Golgi apparatus|nucleus	DNA binding|histone-lysine N-methyltransferase activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1	Ovarian(185;0.249)	all_lung(284;2.56e-05)|Lung NSC(185;4.94e-05)|Renal(390;0.000147)|Breast(348;0.000162)|Colorectal(325;0.00058)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)	GBM - Glioblastoma multiforme(2;0.00182)	UCEC - Uterine corpus endometrioid carcinoma (279;0.00224)|Colorectal(212;3.23e-08)|BRCA - Breast invasive adenocarcinoma(304;2.16e-05)|COAD - Colon adenocarcinoma(227;2.53e-05)|Kidney(185;0.000762)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(313;0.00446)|READ - Rectum adenocarcinoma(331;0.0276)|Lung(427;0.145)		CTTTACAGATCCCAGCAAGGC	0.473													51	88					0	0	0.000781405	0	0
SPEN	23013	broad.mit.edu	37	1	16255923	16255923	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:16255923C>T	uc001axk.1	+	11	3392	c.3188C>T	c.(3187-3189)CCC>CTC	p.P1063L	SPEN_uc010obp.1_Missense_Mutation_p.P1022L	NM_015001	NP_055816	Q96T58	MINT_HUMAN	spen homolog, transcriptional regulator	1063					interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|Notch signaling pathway	nucleus	nucleotide binding|protein binding|RNA binding			ovary(6)|breast(3)|lung(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15		Colorectal(325;0.000258)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0185)|Colorectal(212;5.96e-07)|COAD - Colon adenocarcinoma(227;3.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000115)|Kidney(64;0.000212)|KIRC - Kidney renal clear cell carcinoma(64;0.003)|STAD - Stomach adenocarcinoma(313;0.013)|READ - Rectum adenocarcinoma(331;0.0681)		GTTGCCAGCCCCAAAGACTGT	0.463													22	72					0	0	0.000586117	0	0
EPHA2	1969	broad.mit.edu	37	1	16475117	16475117	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:16475117G>A	uc001aya.1	-	3	716	c.579C>T	c.(577-579)TCC>TCT	p.S193S	EPHA2_uc010oca.1_Silent_p.S193S	NM_004431	NP_004422	P29317	EPHA2_HUMAN	ephrin receptor EphA2 precursor	193	Extracellular (Potential).|Cys-rich.				activation of Rac GTPase activity|angiogenesis|apoptosis|cell chemotaxis|negative regulation of protein kinase B signaling cascade|positive regulation of establishment of protein localization in plasma membrane|protein kinase B signaling cascade|regulation of blood vessel endothelial cell migration|regulation of cell adhesion mediated by integrin|regulation of lamellipodium assembly|response to growth factor stimulus	focal adhesion|integral to plasma membrane|lamellipodium membrane|ruffle membrane	ATP binding|ephrin receptor activity|protein binding			lung(3)|central_nervous_system(3)|stomach(2)|ovary(2)	10		Colorectal(325;3.46e-05)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0181)|Colorectal(212;3.63e-07)|COAD - Colon adenocarcinoma(227;2.25e-05)|BRCA - Breast invasive adenocarcinoma(304;9.58e-05)|Kidney(64;0.000175)|KIRC - Kidney renal clear cell carcinoma(64;0.00261)|STAD - Stomach adenocarcinoma(313;0.00669)|READ - Rectum adenocarcinoma(331;0.0649)	Dasatinib(DB01254)	AGACACGGACGGAGAGCAGCG	0.642													11	33					0	0	0.000978159	0	0
UBR4	23352	broad.mit.edu	37	1	19415264	19415265	+	Silent	DNP	GG	AA	AA			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:19415264_19415265GG>AA	uc001bbi.2	-	98	14422_14423	c.14418_14419CC>TT	c.(14416-14421)ACCCTG>ACTTTG	p.4806_4807TL>TL	UBR4_uc010ocv.1_Silent_p.329_330TL>TL|UBR4_uc009vph.2_Silent_p.440_441TL>TL|UBR4_uc010ocw.1_Silent_p.470_471TL>TL|UBR4_uc001bbg.2_Silent_p.517_518TL>TL|UBR4_uc001bbh.2_Silent_p.515_516TL>TL	NM_020765	NP_065816	Q5T4S7	UBR4_HUMAN	retinoblastoma-associated factor 600	4806_4807					interspecies interaction between organisms	cytoplasm|cytoskeleton|integral to membrane|nucleus	calmodulin binding|ubiquitin-protein ligase activity|zinc ion binding			kidney(10)|ovary(7)|breast(4)|pancreas(2)|skin(2)	25		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000328)|Lung NSC(340;0.000406)|Breast(348;0.000814)|Ovarian(437;0.00774)|Myeloproliferative disorder(586;0.0256)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00674)|BRCA - Breast invasive adenocarcinoma(304;5.43e-05)|Kidney(64;0.000337)|KIRC - Kidney renal clear cell carcinoma(64;0.00426)|STAD - Stomach adenocarcinoma(196;0.00715)|READ - Rectum adenocarcinoma(331;0.0816)		GTCATGCCCAGGGTGCCCAGGG	0.594													24	36					0	0	6.4e-05	0	0
TMCO4	255104	broad.mit.edu	37	1	20072049	20072049	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:20072049C>G	uc001bcn.2	-	10	1095	c.853G>C	c.(853-855)GGG>CGG	p.G285R	TMCO4_uc001bcm.2_Intron|TMCO4_uc001bco.1_Missense_Mutation_p.G285R|TMCO4_uc001bcp.1_Intron|TMCO4_uc009vpn.1_Missense_Mutation_p.G285R|TMCO4_uc001bcq.1_Missense_Mutation_p.G285R	NM_181719	NP_859070	Q5TGY1	TMCO4_HUMAN	transmembrane and coiled-coil domains 4	285						integral to membrane					0		Colorectal(325;0.000147)|Renal(390;0.000469)|all_lung(284;0.00519)|Breast(348;0.00526)|Lung NSC(340;0.00544)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00708)|COAD - Colon adenocarcinoma(152;2.28e-05)|BRCA - Breast invasive adenocarcinoma(304;5.8e-05)|Kidney(64;0.000367)|GBM - Glioblastoma multiforme(114;0.000377)|KIRC - Kidney renal clear cell carcinoma(64;0.00459)|STAD - Stomach adenocarcinoma(196;0.0072)|READ - Rectum adenocarcinoma(331;0.0862)|Lung(427;0.223)		GCGAGCCACCCCGTGACGGCG	0.587													28	108					0	0	0.001512	0	0
ECE1	1889	broad.mit.edu	37	1	21564728	21564728	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:21564728G>A	uc001bek.2	-	11	1363	c.1288C>T	c.(1288-1290)CCT>TCT	p.P430S	ECE1_uc001bem.2_Missense_Mutation_p.P414S|ECE1_uc001bej.2_Missense_Mutation_p.P418S|ECE1_uc001bei.2_Missense_Mutation_p.P427S|ECE1_uc010odl.1_Missense_Mutation_p.P430S|ECE1_uc009vqa.1_Missense_Mutation_p.P430S	NM_001397	NP_001388	P42892	ECE1_HUMAN	endothelin converting enzyme 1 isoform 1	430	Extracellular (Potential).				bradykinin catabolic process|calcitonin catabolic process|ear development|embryonic digit morphogenesis|endothelin maturation|heart development|positive regulation of receptor recycling|substance P catabolic process	early endosome|external side of plasma membrane|integral to membrane|intrinsic to endosome membrane|membrane fraction|perinuclear region of cytoplasm|plasma membrane|Weibel-Palade body	metal ion binding|metalloendopeptidase activity|protein homodimerization activity			ovary(2)|skin(1)	3		Lung NSC(340;1.14e-05)|all_lung(284;1.23e-05)|Colorectal(325;3.46e-05)|Renal(390;9.67e-05)|Breast(348;0.00147)|Ovarian(437;0.00432)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0183)|OV - Ovarian serous cystadenocarcinoma(117;4.83e-27)|COAD - Colon adenocarcinoma(152;1.36e-06)|GBM - Glioblastoma multiforme(114;1.47e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000162)|STAD - Stomach adenocarcinoma(196;0.00326)|KIRC - Kidney renal clear cell carcinoma(1967;0.00755)|READ - Rectum adenocarcinoma(331;0.0678)|Lung(427;0.206)		TTCCAGCGAGGAAGACAGGTC	0.562													14	19					0	0	0.00244969	0	0
HTR1D	3352	broad.mit.edu	37	1	23519749	23519749	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:23519749G>A	uc001bgn.2	-	1	1474	c.964C>T	c.(964-966)CTG>TTG	p.L322L		NM_000864	NP_000855	P28221	5HT1D_HUMAN	5-hydroxytryptamine (serotonin) receptor 1D	322	Helical; Name=6; (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|intestine smooth muscle contraction|synaptic transmission	integral to plasma membrane	serotonin receptor activity				0		Colorectal(325;0.000147)|Renal(390;0.000734)|Lung NSC(340;0.000779)|all_lung(284;0.00135)|Breast(348;0.0385)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0561)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;4.69e-27)|Colorectal(126;4.86e-08)|COAD - Colon adenocarcinoma(152;2.86e-06)|GBM - Glioblastoma multiforme(114;0.00012)|BRCA - Breast invasive adenocarcinoma(304;0.000949)|KIRC - Kidney renal clear cell carcinoma(1967;0.00122)|STAD - Stomach adenocarcinoma(196;0.0123)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.083)|LUSC - Lung squamous cell carcinoma(448;0.185)	Almotriptan(DB00918)|Dihydroergotamine(DB00320)|Eletriptan(DB00216)|Ergotamine(DB00696)|Frovatriptan(DB00998)|Naratriptan(DB00952)|Rizatriptan(DB00953)|Sumatriptan(DB00669)|Tegaserod(DB01079)|Ziprasidone(DB00246)|Zolmitriptan(DB00315)	GGGAGGACCAGAGACACCACG	0.522													19	77					0	0	0.000958276	0	0
HTR1D	3352	broad.mit.edu	37	1	23520335	23520335	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:23520335G>A	uc001bgn.2	-	1	888	c.378C>T	c.(376-378)ATC>ATT	p.I126I		NM_000864	NP_000855	P28221	5HT1D_HUMAN	5-hydroxytryptamine (serotonin) receptor 1D	126	Helical; Name=3; (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|intestine smooth muscle contraction|synaptic transmission	integral to plasma membrane	serotonin receptor activity				0		Colorectal(325;0.000147)|Renal(390;0.000734)|Lung NSC(340;0.000779)|all_lung(284;0.00135)|Breast(348;0.0385)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0561)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;4.69e-27)|Colorectal(126;4.86e-08)|COAD - Colon adenocarcinoma(152;2.86e-06)|GBM - Glioblastoma multiforme(114;0.00012)|BRCA - Breast invasive adenocarcinoma(304;0.000949)|KIRC - Kidney renal clear cell carcinoma(1967;0.00122)|STAD - Stomach adenocarcinoma(196;0.0123)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.083)|LUSC - Lung squamous cell carcinoma(448;0.185)	Almotriptan(DB00918)|Dihydroergotamine(DB00320)|Eletriptan(DB00216)|Ergotamine(DB00696)|Frovatriptan(DB00998)|Naratriptan(DB00952)|Rizatriptan(DB00953)|Sumatriptan(DB00669)|Tegaserod(DB01079)|Ziprasidone(DB00246)|Zolmitriptan(DB00315)	AGAGATGCAGGATGGAGGCTG	0.552													10	34					0	0	0.000442599	0	0
ASAP3	55616	broad.mit.edu	37	1	23758187	23758187	+	Splice_Site	SNP	A	G	G			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:23758187A>G	uc001bha.2	-	23	2670	c.2546_splice	c.e23+1	p.S849_splice	ASAP3_uc001bgy.1_Splice_Site_p.S353_splice|ASAP3_uc001bgz.1_Splice_Site|ASAP3_uc010odz.1_Splice_Site_p.S739_splice|ASAP3_uc010oea.1_Splice_Site_p.S840_splice|ASAP3_uc001bhb.2_Intron	NM_017707	NP_060177	Q8TDY4	ASAP3_HUMAN	ArfGAP with SH3 domain, ankyrin repeat and PH						regulation of ARF GTPase activity	cytoplasm	ARF GTPase activator activity|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3						GCCCTCACCAACCTGAATCTG	0.383													9	48					0	0	0.000442599	0	0
MYOM3	127294	broad.mit.edu	37	1	24411063	24411063	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:24411063C>T	uc001bin.3	-	16	2028	c.1865G>A	c.(1864-1866)TGG>TAG	p.W622*	MYOM3_uc001bim.3_Nonsense_Mutation_p.W279*|MYOM3_uc001bio.2_Nonsense_Mutation_p.W622*|MYOM3_uc001bip.1_Nonsense_Mutation_p.W279*	NM_152372	NP_689585	Q5VTT5	MYOM3_HUMAN	myomesin family, member 3	622	Fibronectin type-III 3.									skin(2)|ovary(1)	3		Colorectal(325;3.55e-05)|Renal(390;0.000703)|Lung NSC(340;0.001)|all_lung(284;0.0014)|Ovarian(437;0.00351)|Breast(348;0.0126)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;5.31e-24)|Colorectal(126;7.52e-08)|COAD - Colon adenocarcinoma(152;4.01e-06)|GBM - Glioblastoma multiforme(114;4.36e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00108)|KIRC - Kidney renal clear cell carcinoma(1967;0.00404)|STAD - Stomach adenocarcinoma(196;0.00966)|READ - Rectum adenocarcinoma(331;0.0678)|Lung(427;0.153)		CACAGGATCCCATGTCAGGGA	0.498													74	133					0	0	0.000781405	0	0
RHCE	6006	broad.mit.edu	37	1	25712296	25712296	+	Missense_Mutation	SNP	C	T	T	rs1053369		TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:25712296C>T	uc001bkf.2	-	7	1065	c.979G>A	c.(979-981)GTC>ATC	p.V327I	RHCE_uc001bkg.2_Intron|RHCE_uc001bkh.2_Missense_Mutation_p.V222I|RHCE_uc001bki.2_Missense_Mutation_p.V176I|RHCE_uc001bkj.2_Missense_Mutation_p.V311I	NM_020485	NP_065231	P18577	RHCE_HUMAN	Rhesus blood group, CcEe antigens isoform 1	327						integral to plasma membrane					0		Colorectal(325;3.46e-05)|Lung NSC(340;0.000245)|all_lung(284;0.000335)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0101)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0936)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0426)|OV - Ovarian serous cystadenocarcinoma(117;2.12e-27)|Colorectal(126;3.16e-08)|COAD - Colon adenocarcinoma(152;1.72e-06)|STAD - Stomach adenocarcinoma(196;0.00035)|KIRC - Kidney renal clear cell carcinoma(1967;0.000769)|BRCA - Breast invasive adenocarcinoma(304;0.00101)|GBM - Glioblastoma multiforme(114;0.00458)|READ - Rectum adenocarcinoma(331;0.0649)		GAGTGCATGACGGAGATGTGG	0.517													21	80					0	0	0.00152264	0	0
MATN1	4146	broad.mit.edu	37	1	31189098	31189098	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:31189098C>T	uc001brz.2	-	5	899	c.865G>A	c.(865-867)GAG>AAG	p.E289K	uc001bsb.1_5'Flank|MATN1_uc001bsa.1_Missense_Mutation_p.E207K	NM_002379	NP_002370	P21941	MATN1_HUMAN	matrilin 1, cartilage matrix protein precursor	289	VWFA 2.				protein complex assembly	proteinaceous extracellular matrix	extracellular matrix structural constituent|protein binding			central_nervous_system(1)	1		Colorectal(325;0.00792)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)|Ovarian(437;0.0563)|Breast(348;0.0848)|Medulloblastoma(700;0.123)		Colorectal(126;1.29e-05)|COAD - Colon adenocarcinoma(152;0.000726)|STAD - Stomach adenocarcinoma(196;0.0183)|READ - Rectum adenocarcinoma(331;0.0649)		TCAAAGTTCTCTGGCCTCACA	0.577													13	40					0	0	0.00244969	0	0
SPOCD1	90853	broad.mit.edu	37	1	32265673	32265673	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:32265673G>A	uc001bts.1	-	5	1730	c.1672C>T	c.(1672-1674)CCA>TCA	p.P558S	SPOCD1_uc001btt.2_5'Flank|SPOCD1_uc001btu.2_Missense_Mutation_p.P558S|SPOCD1_uc001btv.2_Missense_Mutation_p.P51S|SPOCD1_uc001btw.1_5'Flank	NM_144569	NP_653170	Q6ZMY3	SPOC1_HUMAN	SPOC domain containing 1	558					transcription, DNA-dependent					ovary(5)|breast(1)	6		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.186)|Ovarian(437;0.199)		STAD - Stomach adenocarcinoma(196;0.18)		CCGCTTCTTGGAGGGTAGAAG	0.622													9	19					0	0	0.000274275	0	0
GJB5	2709	broad.mit.edu	37	1	35223138	35223138	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:35223138C>T	uc001bxu.2	+	2	307	c.207C>T	c.(205-207)TTC>TTT	p.F69F	GJB4_uc001bxv.1_5'Flank	NM_005268	NP_005259	O95377	CXB5_HUMAN	gap junction protein, beta 5, 31.1kDa	69	Extracellular (Potential).				cell communication|epidermis development	connexon complex|integral to membrane				ovary(1)	1		Myeloproliferative disorder(586;0.0393)				ATGAGTTCTTCCCTGTGTCCC	0.602													30	43					0	0	0.00178596	0	0
THRAP3	9967	broad.mit.edu	37	1	36752393	36752393	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:36752393C>T	uc001cae.3	+	4	786	c.562C>T	c.(562-564)CGG>TGG	p.R188W	THRAP3_uc001caf.3_Missense_Mutation_p.R188W|THRAP3_uc001cag.1_Missense_Mutation_p.R188W	NM_005119	NP_005110	Q9Y2W1	TR150_HUMAN	thyroid hormone receptor associated protein 3	188	Ser-rich.				androgen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ATP binding|ligand-dependent nuclear receptor transcription coactivator activity|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			ovary(5)|lung(3)|breast(1)	9		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				TAAGGATAGCCGGCCATCTCA	0.522			T	USP6	aneurysmal bone cysts								73	110					0	0	0.000781405	0	0
LSM10	84967	broad.mit.edu	37	1	36859698	36859698	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:36859698G>A	uc001cao.1	-	2	183	c.33C>T	c.(31-33)ACC>ACT	p.T11T		NM_032881	NP_116270	Q969L4	LSM10_HUMAN	LSM10, U7 small nuclear RNA associated	11					histone mRNA metabolic process|mRNA processing|RNA splicing|S phase of mitotic cell cycle|termination of RNA polymerase II transcription	Cajal body|U7 snRNP	histone pre-mRNA DCP binding|protein binding				0		Myeloproliferative disorder(586;0.0393)				TCTCAGAGATGGTCCGCTCCT	0.602													16	30					0	0	0.000566183	0	0
GRIK3	2899	broad.mit.edu	37	1	37271845	37271845	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:37271845C>T	uc001caz.2	-	14	2309	c.2174G>A	c.(2173-2175)GGC>GAC	p.G725D	GRIK3_uc001cba.1_Missense_Mutation_p.G725D	NM_000831	NP_000822	Q13003	GRIK3_HUMAN	glutamate receptor, ionotropic, kainate 3	725	Extracellular (Potential).				negative regulation of synaptic transmission, glutamatergic|regulation of membrane potential|synaptic transmission	cell junction|dendrite cytoplasm|integral to plasma membrane|perikaryon|postsynaptic membrane|terminal button	adenylate cyclase inhibiting metabotropic glutamate receptor activity|extracellular-glutamate-gated ion channel activity|G-protein-coupled receptor binding|kainate selective glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)|breast(1)	7		Myeloproliferative disorder(586;0.0258)|all_neural(195;0.169)			L-Glutamic Acid(DB00142)	CCTCTGGATGCCCTCCTCGTT	0.607													14	43					0	0	0.00244969	0	0
RLF	6018	broad.mit.edu	37	1	40656510	40656510	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:40656510C>T	uc001cfc.3	+	3	490	c.459C>T	c.(457-459)TTC>TTT	p.F153F		NM_012421	NP_036553	Q13129	RLF_HUMAN	rearranged L-myc fusion	153					chromosome organization|DNA integration|DNA mediated transformation|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			ovary(2)|pancreas(1)	3	Lung NSC(20;4.38e-06)|Ovarian(52;0.00167)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;5.87e-19)|Epithelial(16;7.02e-16)|all cancers(16;1.69e-14)|Lung(16;0.0427)|LUSC - Lung squamous cell carcinoma(16;0.0461)			GGCTACCATTCCTTCAGTCTC	0.363													11	26					0	0	0.00136819	0	0
KCNQ4	9132	broad.mit.edu	37	1	41296815	41296815	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:41296815C>T	uc001cgh.1	+	10	1434	c.1352C>T	c.(1351-1353)CCT>CTT	p.P451L	KCNQ4_uc001cgi.1_Missense_Mutation_p.P397L	NM_004700	NP_004691	P56696	KCNQ4_HUMAN	potassium voltage-gated channel KQT-like protein	451	Cytoplasmic.				sensory perception of sound	basal plasma membrane|voltage-gated potassium channel complex				central_nervous_system(1)	1	Ovarian(52;0.00769)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;1.38e-17)			CGGACGGGTCCTTCCAAGCAG	0.647													3	12					0	0	6.4e-05	0	0
HIVEP3	59269	broad.mit.edu	37	1	42048624	42048624	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:42048624G>A	uc001cgz.3	-	4	3058	c.1845C>T	c.(1843-1845)TCC>TCT	p.S615S	HIVEP3_uc001cha.3_Silent_p.S615S|HIVEP3_uc001cgy.2_RNA	NM_024503	NP_078779	Q5T1R4	ZEP3_HUMAN	human immunodeficiency virus type I enhancer	615	No DNA binding activity or transactivation activity, but complete prevention of TRAF-dependent NF-Kappa-B activation; associates with TRAF2 and JUN (By similarity).				positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6	Ovarian(52;0.00769)|all_hematologic(146;0.109)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0367)				CCGAGGGCTTGGAGGCTGTGT	0.527													58	69					0	0	0.000781405	0	0
KIAA0467	23334	broad.mit.edu	37	1	43909455	43909455	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:43909455C>T	uc001cjk.1	+	47	6578	c.6116C>T	c.(6115-6117)TCA>TTA	p.S2039L	KIAA0467_uc001cjl.1_5'Flank	NM_015284	NP_056099	Q5T011	SZT2_HUMAN	hypothetical protein LOC23334	2938						peroxisome					0	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				CGGCCCCCCTCACCCGCCCGC	0.582													49	72					0	0	0.000781405	0	0
DPH2	1802	broad.mit.edu	37	1	44436297	44436297	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:44436297G>T	uc001ckz.2	+	2	372	c.177G>T	c.(175-177)TTG>TTT	p.L59F	DPH2_uc001cla.2_Missense_Mutation_p.L59F|DPH2_uc010okk.1_5'UTR|DPH2_uc001clb.2_5'UTR	NM_001384	NP_001375	Q9BQC3	DPH2_HUMAN	diphthamide biosynthesis protein 2 isoform a	59					peptidyl-diphthamide biosynthetic process from peptidyl-histidine	cytoplasm				ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0511)				ACCAGCTATTGGGAGATGCTG	0.527													9	298					6.40141e-05	0.000299094	0.000978159	1	0
KIF2C	11004	broad.mit.edu	37	1	45205642	45205643	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:45205642_45205643CC>AA	uc001cmg.3	+	1	153_154	c.38_39CC>AA	c.(37-39)CCC>CAA	p.P13Q	KIF2C_uc010olb.1_Missense_Mutation_p.P13Q	NM_006845	NP_006836	Q99661	KIF2C_HUMAN	kinesin family member 2C	13	Globular (Potential).				blood coagulation|cell division|cell proliferation|chromosome segregation|establishment or maintenance of microtubule cytoskeleton polarity|microtubule depolymerization|microtubule-based movement|mitotic prometaphase|regulation of chromosome segregation	condensed chromosome kinetochore|cytosol|kinesin complex|microtubule|nucleus	ATP binding|centromeric DNA binding|microtubule motor activity|microtubule plus-end binding			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)					CGCCTGTTTCCCGGTCTCGCTA	0.559													10	447					0	0	6.4e-05	0	0
EIF2B3	8891	broad.mit.edu	37	1	45363041	45363041	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:45363041G>A	uc001cmt.1	-	6	769	c.642C>T	c.(640-642)TTC>TTT	p.F214F	EIF2B3_uc001cmu.1_Silent_p.F214F|EIF2B3_uc001cmv.1_Silent_p.F214F|EIF2B3_uc001cmw.2_Silent_p.F214F	NM_020365	NP_065098	Q9NR50	EI2BG_HUMAN	eukaryotic translation initiation factor 2B,	214					negative regulation of translational initiation in response to stress|oligodendrocyte development|response to glucose stimulus|response to heat|response to peptide hormone stimulus	cytosol|eukaryotic translation initiation factor 2B complex	nucleotidyltransferase activity|protein binding|translation initiation factor activity			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)					TTTCCATTAGGAAATCCACGA	0.348													4	19					0	0	0.00116845	0	0
MUTYH	4595	broad.mit.edu	37	1	45796895	45796895	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:45796895C>T	uc001cnm.2	-	14	1642	c.1426G>A	c.(1426-1428)GAG>AAG	p.E476K	MUTYH_uc009vxn.2_Missense_Mutation_p.E301K|MUTYH_uc001cnf.2_Missense_Mutation_p.E451K|MUTYH_uc009vxo.2_Missense_Mutation_p.E451K|MUTYH_uc001cng.2_Missense_Mutation_p.E462K|MUTYH_uc001cnj.2_Missense_Mutation_p.E359K|MUTYH_uc001cni.2_Missense_Mutation_p.E451K|MUTYH_uc001cnh.2_Missense_Mutation_p.E452K|MUTYH_uc001cno.2_Missense_Mutation_p.E359K|MUTYH_uc001cnk.2_Missense_Mutation_p.E336K|MUTYH_uc010oll.1_Missense_Mutation_p.E160K|MUTYH_uc001cnl.2_Missense_Mutation_p.E465K|MUTYH_uc009vxp.2_Missense_Mutation_p.E479K|MUTYH_uc001cnn.2_Missense_Mutation_p.E466K	NM_012222	NP_036354	Q9UIF7	MUTYH_HUMAN	mutY homolog isoform 1	476	Nudix hydrolase.				depurination|mismatch repair	nucleoplasm	4 iron, 4 sulfur cluster binding|DNA N-glycosylase activity|endonuclease activity|metal ion binding|MutSalpha complex binding				0	Acute lymphoblastic leukemia(166;0.155)					TGAAATTCCTCCTGCGTCAGC	0.498			Mis			colorectal		BER_DNA_glycosylases	MUTYH-associated_polyposis				45	71					0	0	0.000781405	0	0
IPP	3652	broad.mit.edu	37	1	46180070	46180070	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:46180070G>A	uc001cou.2	-	8	1645	c.1378C>T	c.(1378-1380)CCA>TCA	p.P460S	IPP_uc001cos.3_Missense_Mutation_p.P460S	NM_005897	NP_005888	Q9Y573	IPP_HUMAN	intracisternal A particle-promoted polypeptide	460	Kelch 4.					actin cytoskeleton|cytoplasm	actin binding			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)					TTAGAAAGTGGATCATAGACT	0.428													19	33					0	0	0.00152264	0	0
TAL1	6886	broad.mit.edu	37	1	47685646	47685646	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:47685646C>T	uc001cqx.2	-	4	1319	c.742G>A	c.(742-744)GAG>AAG	p.E248K	TAL1_uc009vyq.2_Silent_p.R4R|TAL1_uc001cqy.2_Missense_Mutation_p.E248K	NM_003189	NP_003180	P17542	TAL1_HUMAN	T-cell acute lymphocytic leukemia 1	248					basophil differentiation|cell fate commitment|cell proliferation|embryonic hemopoiesis|erythrocyte differentiation|megakaryocyte differentiation|positive regulation of cell division|positive regulation of chromatin assembly or disassembly|positive regulation of erythrocyte differentiation|positive regulation of mitotic cell cycle|positive regulation of protein complex assembly|positive regulation of transcription from RNA polymerase II promoter	nuclear chromatin	E-box binding|histone deacetylase binding|sequence-specific DNA binding transcription factor activity			lung(1)	1						GTGCCCTCCTCCTCCTGGTCA	0.522			T	TRD@|SIL	lymphoblastic leukemia/biphasic								13	19					0	0	0.00136819	0	0
ZYG11B	79699	broad.mit.edu	37	1	53287191	53287191	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:53287191C>T	uc001cuj.2	+	14	2320	c.2125C>T	c.(2125-2127)CCC>TCC	p.P709S	ZYG11B_uc010onj.1_Missense_Mutation_p.P630S|ZYG11B_uc009vzh.2_Missense_Mutation_p.P131S	NM_024646	NP_078922	Q9C0D3	ZY11B_HUMAN	zyg-11 homolog B	709							protein binding			upper_aerodigestive_tract(2)|ovary(1)|pancreas(1)	4						ACATACTGATCCCCATGTCCA	0.433													6	25					0	0	0.00116845	0	0
C8B	732	broad.mit.edu	37	1	57406649	57406649	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:57406649A>G	uc001cyp.2	-	9	1338	c.1271T>C	c.(1270-1272)GTG>GCG	p.V424A	C8B_uc010oon.1_Missense_Mutation_p.V362A|C8B_uc010ooo.1_Missense_Mutation_p.V372A	NM_000066	NP_000057	P07358	CO8B_HUMAN	complement component 8, beta polypeptide	424	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	membrane attack complex				central_nervous_system(2)|large_intestine(1)|ovary(1)	4						TACCAGGACCACCAAGTCCTC	0.577													5	16					0	0	0.00116845	0	0
C8B	732	broad.mit.edu	37	1	57406657	57406657	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:57406657C>T	uc001cyp.2	-	9	1330	c.1263G>A	c.(1261-1263)GAG>GAA	p.E421E	C8B_uc010oon.1_Silent_p.E359E|C8B_uc010ooo.1_Silent_p.E369E	NM_000066	NP_000057	P07358	CO8B_HUMAN	complement component 8, beta polypeptide	421	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	membrane attack complex				central_nervous_system(2)|large_intestine(1)|ovary(1)	4						CCACCAAGTCCTCCACCATGG	0.577													5	16					0	0	0.00198382	0	0
LRRC7	57554	broad.mit.edu	37	1	70225901	70225901	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:70225901G>A	uc001dep.2	+	1	44	c.14G>A	c.(13-15)CGG>CAG	p.R5Q	LRRC7_uc001deo.1_Missense_Mutation_p.R43Q|LRRC7_uc009wbg.2_5'UTR	NM_020794	NP_065845	Q96NW7	LRRC7_HUMAN	leucine rich repeat containing 7	5						centrosome|focal adhesion|nucleolus	protein binding			ovary(9)|breast(2)|central_nervous_system(2)|liver(1)	14						ACCACCAAACGGAAAATCATC	0.438													3	5					0	0	0.00024832	0	0
NEGR1	257194	broad.mit.edu	37	1	72241922	72241922	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:72241922G>A	uc001dfw.2	-	3	568	c.468C>T	c.(466-468)GTC>GTT	p.V156V	NEGR1_uc001dfv.2_Silent_p.V28V|NEGR1_uc010oqs.1_Silent_p.V156V	NM_173808	NP_776169	Q7Z3B1	NEGR1_HUMAN	neuronal growth regulator 1 precursor	156	Ig-like C2-type 2.				cell adhesion	anchored to membrane|plasma membrane				ovary(1)	1		all_cancers(4;1.26e-06)|Renal(4;1.32e-08)|all_epithelial(4;5.39e-07)|Hepatocellular(141;0.117)		KIRC - Kidney renal clear cell carcinoma(4;0.00529)|Kidney(4;0.00609)|all cancers(265;0.022)|GBM - Glioblastoma multiforme(62;0.0382)|Epithelial(280;0.242)		AAGTAAGAGTGACGTTGGTTC	0.393													13	13					0	0	0.00136819	0	0
C1orf173	127254	broad.mit.edu	37	1	75072375	75072375	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:75072375C>T	uc001dgg.2	-	10	1618	c.1399G>A	c.(1399-1401)GAA>AAA	p.E467K	uc001dgh.2_Intron|C1orf173_uc001dgi.3_Missense_Mutation_p.E261K	NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	467	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						GTTACCACTTCTTTGAGCCCT	0.373													21	38					0	0	0.00152264	0	0
LPHN2	23266	broad.mit.edu	37	1	82456404	82456404	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:82456404C>T	uc001dit.3	+	21	3968	c.3787C>T	c.(3787-3789)CAT>TAT	p.H1263Y	LPHN2_uc001dis.2_Missense_Mutation_p.H243Y|LPHN2_uc001diu.2_Missense_Mutation_p.H1263Y|LPHN2_uc001div.2_3'UTR|LPHN2_uc009wcd.2_3'UTR|LPHN2_uc001diw.2_Missense_Mutation_p.H890Y	NM_012302	NP_036434	O95490	LPHN2_HUMAN	latrophilin 2 precursor	1319	Cytoplasmic (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|latrotoxin receptor activity|sugar binding			ovary(3)|lung(3)|breast(2)|central_nervous_system(1)	9				all cancers(265;0.00142)|Epithelial(280;0.00829)|OV - Ovarian serous cystadenocarcinoma(397;0.077)|STAD - Stomach adenocarcinoma(256;0.248)		GCTGGAGCTCCATCACAAAGA	0.502													13	38					0	0	0.000422831	0	0
GBP2	2634	broad.mit.edu	37	1	89573959	89573959	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:89573959G>A	uc001dmz.1	-	11	1946	c.1675C>T	c.(1675-1677)CTC>TTC	p.L559F	GBP2_uc001dmy.1_RNA	NM_004120	NP_004111	P32456	GBP2_HUMAN	guanylate binding protein 2,	559					interferon-gamma-mediated signaling pathway|type I interferon-mediated signaling pathway	plasma membrane	GTP binding|GTPase activity			ovary(1)	1		Lung NSC(277;0.0908)		all cancers(265;0.0151)|Epithelial(280;0.0284)		CCCTCCTTGAGAAGGCGTTCC	0.408													11	38					0	0	0.000673444	0	0
ABCA4	24	broad.mit.edu	37	1	94528755	94528755	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:94528755G>A	uc001dqh.2	-	12	1777	c.1673C>T	c.(1672-1674)CCC>CTC	p.P558L	ABCA4_uc010otn.1_Missense_Mutation_p.P558L	NM_000350	NP_000341	P78363	ABCA4_HUMAN	ATP-binding cassette, sub-family A member 4	558	Extracellular.				phototransduction, visible light|visual perception	integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)|skin(4)|central_nervous_system(2)|upper_aerodigestive_tract(1)|breast(1)	12		all_lung(203;0.000757)|Lung NSC(277;0.00335)		all cancers(265;0.00432)|GBM - Glioblastoma multiforme(16;0.00715)|Epithelial(280;0.171)		GCTGGTCCAGGGATACATGTC	0.473													29	106					0	0	0.000878237	0	0
DBT	1629	broad.mit.edu	37	1	100715332	100715332	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:100715332C>T	uc001dta.2	-	1	78	c.45G>A	c.(43-45)GGG>GGA	p.G15G	DBT_uc010oug.1_5'UTR	NM_001918	NP_001909	P11182	ODB2_HUMAN	dihydrolipoamide branched chain transacylase	15					branched chain family amino acid catabolic process|fatty-acyl-CoA biosynthetic process	microtubule cytoskeleton|mitochondrial alpha-ketoglutarate dehydrogenase complex|mitochondrial nucleoid	acyltransferase activity|cofactor binding|dihydrolipoyllysine-residue (2-methylpropanoyl)transferase activity|protein binding			pancreas(1)	1		all_epithelial(167;5.4e-06)|all_lung(203;0.00125)|Lung NSC(277;0.00131)		Epithelial(280;0.0739)|all cancers(265;0.123)|COAD - Colon adenocarcinoma(174;0.154)|Lung(183;0.199)		TTACCAGCTTCCCCGCATTCC	0.582													16	59					0	0	0.000566183	0	0
S1PR1	1901	broad.mit.edu	37	1	101704868	101704868	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:101704868T>C	uc001dud.2	+	2	842	c.328T>C	c.(328-330)TAC>CAC	p.Y110H	S1PR1_uc009weg.2_Missense_Mutation_p.Y110H	NM_001400	NP_001391	P21453	S1PR1_HUMAN	sphingosine-1-phosphate receptor 1	110	Extracellular (By similarity).				cell adhesion	integral to membrane	lysosphingolipid and lysophosphatidic acid receptor activity			ovary(2)|lung(1)	3						GGCCACCACCTACAAGCTCAC	0.567											OREG0013620	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	15	50					0	0	0.00244969	0	0
CELSR2	1952	broad.mit.edu	37	1	109793986	109793986	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:109793986G>T	uc001dxa.3	+	1	1346	c.1285G>T	c.(1285-1287)GGG>TGG	p.G429W		NM_001408	NP_001399	Q9HCU4	CELR2_HUMAN	cadherin EGF LAG seven-pass G-type receptor 2	429	Cadherin 3.|Extracellular (Potential).				dendrite morphogenesis|homophilic cell adhesion|neural plate anterior/posterior regionalization|neuropeptide signaling pathway|regulation of cell-cell adhesion|regulation of transcription, DNA-dependent|Wnt receptor signaling pathway	cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(4)|lung(3)|skin(1)	8		all_epithelial(167;0.000114)|all_lung(203;0.000321)|Lung NSC(277;0.000626)|Breast(1374;0.244)		Colorectal(144;0.0296)|Lung(183;0.067)|COAD - Colon adenocarcinoma(174;0.114)|Epithelial(280;0.193)|all cancers(265;0.219)		TCGAGACAAGGGGAGCAATGC	0.577													10	411					0.000673444	0.00313064	0.000673444	1	0
CSF1	1435	broad.mit.edu	37	1	110466450	110466450	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:110466450C>T	uc001dyu.2	+	6	1620	c.1207C>T	c.(1207-1209)CCC>TCC	p.P403S	CSF1_uc001dyt.2_Intron|CSF1_uc001dyv.3_Intron|CSF1_uc001dyw.3_Missense_Mutation_p.P403S	NM_172212	NP_757351	P09603	CSF1_HUMAN	colony stimulating factor 1 isoform a precursor	403	Lumenal (Potential).				cell proliferation|developmental process involved in reproduction|macrophage differentiation|monocyte activation|osteoclast differentiation|positive regulation of cell migration|positive regulation of cell-matrix adhesion|positive regulation of cellular protein metabolic process|positive regulation of gene expression|positive regulation of macrophage derived foam cell differentiation|positive regulation of macrophage differentiation|positive regulation of monocyte differentiation|positive regulation of mononuclear cell proliferation|positive regulation of protein kinase activity	extracellular space|integral to membrane|perinuclear region of cytoplasm|plasma membrane|receptor complex	cytokine activity|growth factor activity|macrophage colony-stimulating factor receptor binding|protein homodimerization activity			ovary(1)	1		all_epithelial(167;3.58e-05)|all_lung(203;0.000116)|Lung NSC(277;0.000233)|Acute lymphoblastic leukemia(138;0.204)		Lung(183;0.0238)|Colorectal(144;0.112)|all cancers(265;0.117)|Epithelial(280;0.127)|LUSC - Lung squamous cell carcinoma(189;0.135)		GCCAGGCTCTCCCAGGATCTC	0.667													23	33					0	0	0.000586117	0	0
CTTNBP2NL	55917	broad.mit.edu	37	1	112999892	112999892	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:112999892C>T	uc001ebx.2	+	6	2006	c.1778C>T	c.(1777-1779)CCA>CTA	p.P593L	CTTNBP2NL_uc001ebz.2_RNA	NM_018704	NP_061174	Q9P2B4	CT2NL_HUMAN	CTTNBP2 N-terminal like	593						actin cytoskeleton	protein binding			central_nervous_system(2)|ovary(1)	3		all_cancers(81;0.00064)|all_epithelial(167;0.000415)|all_lung(203;0.00045)|Lung NSC(69;0.000705)		Lung(183;0.0234)|all cancers(265;0.0246)|Epithelial(280;0.0342)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		ACCCCTTCTCCATCTGCTACC	0.552													21	54					0	0	0.00188189	0	0
DENND2C	163259	broad.mit.edu	37	1	115168422	115168422	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:115168422G>A	uc001efd.1	-	4	886	c.184C>T	c.(184-186)CCT>TCT	p.P62S	DENND2C_uc001eez.2_RNA|DENND2C_uc001efc.1_Missense_Mutation_p.P62S	NM_198459	NP_940861	Q68D51	DEN2C_HUMAN	DENN/MADD domain containing 2C	62										skin(3)	3	all_epithelial(7;9.54e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		TCAGCTATAGGATTTTTCTTA	0.388													40	91					0	0	0.00285205	0	0
NGF	4803	broad.mit.edu	37	1	115829102	115829102	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:115829102G>A	uc001efu.1	-	3	484	c.315C>T	c.(313-315)TTC>TTT	p.F105F		NM_002506	NP_002497	P01138	NGF_HUMAN	nerve growth factor, beta polypeptide precursor	105					activation of MAPKK activity|activation of phospholipase C activity|anti-apoptosis|apoptosis|induction of apoptosis by extracellular signals|negative regulation of cell cycle|nerve growth factor processing|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|Ras protein signal transduction	endosome|Golgi lumen	growth factor activity|nerve growth factor receptor binding			upper_aerodigestive_tract(2)	2	Lung SC(450;0.211)	all_cancers(81;1.07e-06)|all_epithelial(167;4.43e-06)|all_lung(203;2.86e-05)|Lung NSC(69;4.99e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)|all cancers(265;0.159)|Epithelial(280;0.179)	Clenbuterol(DB01407)	CACCGACCTCGAAGTCCAGAT	0.587													23	17					0	0	0.00188189	0	0
NGF	4803	broad.mit.edu	37	1	115829228	115829228	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:115829228C>T	uc001efu.1	-	3	358	c.189G>A	c.(187-189)GTG>GTA	p.V63V		NM_002506	NP_002497	P01138	NGF_HUMAN	nerve growth factor, beta polypeptide precursor	63					activation of MAPKK activity|activation of phospholipase C activity|anti-apoptosis|apoptosis|induction of apoptosis by extracellular signals|negative regulation of cell cycle|nerve growth factor processing|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|Ras protein signal transduction	endosome|Golgi lumen	growth factor activity|nerve growth factor receptor binding			upper_aerodigestive_tract(2)	2	Lung SC(450;0.211)	all_cancers(81;1.07e-06)|all_epithelial(167;4.43e-06)|all_lung(203;2.86e-05)|Lung NSC(69;4.99e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)|all cancers(265;0.159)|Epithelial(280;0.179)	Clenbuterol(DB01407)	TCTGCCCCGCCACGCGTGCAG	0.627													8	28					0	0	0.000157383	0	0
C1orf161	126868	broad.mit.edu	37	1	116663652	116663652	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:116663652C>T	uc001egc.1	+	3	413	c.148C>T	c.(148-150)CAA>TAA	p.Q50*		NM_152367	NP_689580	Q8N8X9	MB213_HUMAN	hypothetical protein LOC126868	50											0	Lung SC(450;0.184)	all_cancers(81;0.00142)|all_lung(203;0.000139)|all_epithelial(167;0.000401)|Lung NSC(69;0.000705)		Lung(183;0.0171)|Colorectal(144;0.0686)|LUSC - Lung squamous cell carcinoma(189;0.0903)|all cancers(265;0.108)|COAD - Colon adenocarcinoma(174;0.111)|Epithelial(280;0.12)		CATTAGATTTCAAGCTGTGCC	0.483													82	118					0	0	0.000781405	0	0
C1orf161	126868	broad.mit.edu	37	1	116670891	116670891	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:116670891C>T	uc001egc.1	+	6	1051	c.786C>T	c.(784-786)GTC>GTT	p.V262V		NM_152367	NP_689580	Q8N8X9	MB213_HUMAN	hypothetical protein LOC126868	262											0	Lung SC(450;0.184)	all_cancers(81;0.00142)|all_lung(203;0.000139)|all_epithelial(167;0.000401)|Lung NSC(69;0.000705)		Lung(183;0.0171)|Colorectal(144;0.0686)|LUSC - Lung squamous cell carcinoma(189;0.0903)|all cancers(265;0.108)|COAD - Colon adenocarcinoma(174;0.111)|Epithelial(280;0.12)		GTTTTCAGGTCATGAGGCACC	0.562													16	27					0	0	0.000422831	0	0
SPAG17	200162	broad.mit.edu	37	1	118558588	118558588	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:118558588C>T	uc001ehk.2	-	29	4355	c.4287G>A	c.(4285-4287)ACG>ACA	p.T1429T		NM_206996	NP_996879	Q6Q759	SPG17_HUMAN	sperm associated antigen 17	1429						cilium|flagellar axoneme|microtubule				upper_aerodigestive_tract(2)|ovary(2)|large_intestine(1)|skin(1)	6	Esophageal squamous(2;0.0106)	all_cancers(81;0.0204)|all_lung(203;9.46e-05)|Lung NSC(69;0.000675)|all_epithelial(167;0.01)		Lung(183;0.0858)		TTTGTCATACCGTTCCATTGA	0.303													9	19					0	0	0.000673444	0	0
HAO2	51179	broad.mit.edu	37	1	119927541	119927541	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:119927541C>T	uc001ehq.1	+	5	778	c.426C>T	c.(424-426)ATC>ATT	p.I142I	HAO2_uc001ehr.1_Silent_p.I142I	NM_001005783	NP_001005783	Q9NYQ3	HAOX2_HUMAN	hydroxyacid oxidase 2	142	FMN hydroxy acid dehydrogenase.				fatty acid alpha-oxidation	peroxisome	(S)-2-hydroxy-acid oxidase activity			ovary(2)|skin(2)	4	all_neural(166;0.187)	all_lung(203;1.06e-06)|Lung NSC(69;7.5e-06)|all_epithelial(167;0.000284)		Lung(183;0.0155)|LUSC - Lung squamous cell carcinoma(189;0.0856)		AACAGTTGATCCAGAGGGTAG	0.483													13	17					0	0	0.000308642	0	0
NOTCH2NL	388677	broad.mit.edu	37	1	145273322	145273322	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:145273322G>A	uc001emn.3	+	3	546	c.176G>A	c.(175-177)GGA>GAA	p.G59E	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|NBPF10_uc001emp.3_5'UTR|NOTCH2NL_uc001emm.3_Missense_Mutation_p.G59E|NOTCH2NL_uc001emo.2_Missense_Mutation_p.G59E|NOTCH2NL_uc010oyh.1_RNA	NM_203458	NP_982283	Q7Z3S9	NT2NL_HUMAN	Notch homolog 2 N-terminal like protein	59	EGF-like 2.				cell differentiation|multicellular organismal development|Notch signaling pathway	cytoplasm|extracellular region	calcium ion binding			ovary(1)	1						GGGTTTACAGGAGAGGACTGC	0.577													89	696					0	0	0.000781405	0	0
NBPF10	100132406	broad.mit.edu	37	1	145367719	145367719	+	Missense_Mutation	SNP	G	A	A	rs145025037	by1000genomes	TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:145367719G>A	uc001end.3	+	85	10575	c.10540G>A	c.(10540-10542)GAA>AAA	p.E3514K	NBPF9_uc010oye.1_Intron|NBPF10_uc001emp.3_Intron|NBPF10_uc010oyi.1_Intron|NBPF10_uc010oyk.1_Intron|NBPF10_uc010oyl.1_Intron	NM_001039703	NP_001034792	A6NDV3	A6NDV3_HUMAN	hypothetical protein LOC100132406	3439											0	all_hematologic(923;0.032)			Colorectal(1306;1.36e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)		TGCAGAAATTGAAaagaaggg	0.264													10	56					0	0	0.000978159	0	0
BCL9	607	broad.mit.edu	37	1	147090735	147090735	+	Silent	SNP	A	C	C			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:147090735A>C	uc001epq.2	+	8	1514	c.774A>C	c.(772-774)CCA>CCC	p.P258P	BCL9_uc010ozr.1_Silent_p.P184P	NM_004326	NP_004317	O00512	BCL9_HUMAN	B-cell CLL/lymphoma 9	258	Pro-rich.				Wnt receptor signaling pathway	nucleus	protein binding			ovary(2)|large_intestine(2)|breast(1)|skin(1)	6	all_hematologic(923;0.115)					AGCCAACTCCACCCATTCCGG	0.592			T	IGH@|IGL@	B-ALL								11	76					0	0	0.000586117	0	0
GJA8	2703	broad.mit.edu	37	1	147380200	147380200	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:147380200G>A	uc001epu.1	+	2	181	c.118G>A	c.(118-120)GCC>ACC	p.A40T		NM_005267	NP_005258	P48165	CXA8_HUMAN	connexin 50	40	Helical; (Potential).				cell communication|visual perception	connexon complex|integral to plasma membrane	channel activity			ovary(2)|large_intestine(2)|breast(1)|skin(1)	6	all_hematologic(923;0.0276)					CCTTGGCACGGCCGCAGAGTT	0.592													16	63					0	0	0.000308642	0	0
RPRD2	23248	broad.mit.edu	37	1	150445286	150445286	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:150445286C>T	uc009wlr.2	+	11	4063	c.3862C>T	c.(3862-3864)CCC>TCC	p.P1288S	RPRD2_uc010pcc.1_3'UTR|RPRD2_uc001eup.3_Missense_Mutation_p.P1262S	NM_015203	NP_056018	Q5VT52	RPRD2_HUMAN	Regulation of nuclear pre-mRNA domain containing	1288	Pro-rich.						protein binding			ovary(1)	1						GAGTGGTGTCCCCTTTTCTAC	0.632													17	20					0	0	0.000422831	0	0
GABPB2	126626	broad.mit.edu	37	1	151065782	151065782	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:151065782C>T	uc001ewr.2	+	4	722	c.391C>T	c.(391-393)CAT>TAT	p.H131Y	GABPB2_uc010pcp.1_Missense_Mutation_p.H147Y|GABPB2_uc001ews.2_Missense_Mutation_p.H91Y|GABPB2_uc001ewt.2_Missense_Mutation_p.H30Y	NM_144618	NP_653219	Q8TAK5	GABP2_HUMAN	GA repeat binding protein, beta 2	131	ANK 4.				positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	protein heterodimerization activity|transcription regulatory region DNA binding				0				all cancers(107;7.17e-05)|GBM - Glioblastoma multiforme(94;0.000662)		AGCTGATGTCCATGCTTTCAG	0.433													28	43					0	0	0.00106085	0	0
SEMA6C	10500	broad.mit.edu	37	1	151110496	151110496	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:151110496G>A	uc001ewu.2	-	9	933	c.633C>T	c.(631-633)CTC>CTT	p.L211L	SEMA6C_uc001ewv.2_Silent_p.L211L|SEMA6C_uc001eww.2_Intron|SEMA6C_uc010pcq.1_Silent_p.L211L|SEMA6C_uc009wml.1_RNA	NM_030913	NP_112175	Q9H3T2	SEM6C_HUMAN	semaphorin Y precursor	211	Extracellular (Potential).|Sema.					integral to membrane	receptor activity			ovary(1)|skin(1)	2	Lung SC(34;0.00471)|Ovarian(49;0.0147)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.211)			TGGCGGAGCGGAGTGGGGGCT	0.627													6	36					0	0	0.00198382	0	0
FLG	2312	broad.mit.edu	37	1	152275817	152275817	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:152275817C>T	uc001ezu.1	-	3	11581	c.11545G>A	c.(11545-11547)GAA>AAA	p.E3849K		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	3849	Filaggrin 23.|Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CCCGCTGATTCACCCTGGCCG	0.597									Ichthyosis				60	180					0	0	0.000781405	0	0
LCE1A	353131	broad.mit.edu	37	1	152799975	152799975	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:152799975G>A	uc010pdw.1	+	1	27	c.27G>A	c.(25-27)CAG>CAA	p.Q9Q		NM_178348	NP_848125	Q5T7P2	LCE1A_HUMAN	late cornified envelope 1A	9	Cys-rich.				keratinization					ovary(1)|skin(1)	2	Lung NSC(65;9.06e-30)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			GCCAGCAGCAGTGCCAGCCCC	0.373													13	58					0	0	0.00244969	0	0
S100A7	6278	broad.mit.edu	37	1	153431448	153431448	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:153431448G>A	uc001fbv.1	-	2	113	c.42C>T	c.(40-42)ATC>ATT	p.I14I		NM_002963	NP_002954	P31151	S10A7_HUMAN	S100 calcium binding protein A7	14	EF-hand 1.				angiogenesis|defense response to Gram-negative bacterium|innate immune response|keratinocyte differentiation|positive regulation of ERK1 and ERK2 cascade|positive regulation of granulocyte chemotaxis|positive regulation of monocyte chemotaxis|positive regulation of T cell chemotaxis|response to lipopolysaccharide|response to reactive oxygen species|sequestering of metal ion	cytosol|endoplasmic reticulum|extracellular region|focal adhesion|nucleus	calcium ion binding|RAGE receptor binding|zinc ion binding			skin(1)	1	all_lung(78;2.4e-33)|Lung NSC(65;8.13e-32)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.171)			GAAACATGTCGATCATGCCTA	0.418													22	104					0	0	0.00229938	0	0
ASH1L	55870	broad.mit.edu	37	1	155449607	155449607	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:155449607G>A	uc009wqq.2	-	3	3534	c.3054C>T	c.(3052-3054)CTC>CTT	p.L1018L	ASH1L_uc001fkt.2_Silent_p.L1018L|ASH1L_uc009wqr.1_Silent_p.L1018L	NM_018489	NP_060959	Q9NR48	ASH1L_HUMAN	absent, small, or homeotic 1-like	1018					cell-cell signaling|DNA packaging|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	chromosome|Golgi apparatus|nucleus|tight junction	DNA binding|histone-lysine N-methyltransferase activity|zinc ion binding			skin(5)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	11	Hepatocellular(266;0.0997)|all_neural(408;0.129)|all_hematologic(923;0.145)		Epithelial(20;1.74e-08)|all cancers(21;3.29e-08)|BRCA - Breast invasive adenocarcinoma(34;0.021)			CCGTATTATGGAGTTTGGATT	0.338													16	35					0	0	0.00074312	0	0
YY1AP1	55249	broad.mit.edu	37	1	155630057	155630057	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:155630057G>A	uc001fln.2	-	11	1806	c.1782C>T	c.(1780-1782)ATC>ATT	p.I594I	YY1AP1_uc001flg.2_Silent_p.I333I|YY1AP1_uc010pgg.1_Silent_p.I433I|YY1AP1_uc010pgh.1_Silent_p.I537I|YY1AP1_uc010pgi.1_Silent_p.I686I|YY1AP1_uc001flh.2_Silent_p.I666I|YY1AP1_uc009wqt.2_Silent_p.I517I|YY1AP1_uc001flk.2_Silent_p.I537I|YY1AP1_uc001fll.2_Silent_p.I548I|YY1AP1_uc009wqv.2_Silent_p.I265I|YY1AP1_uc001flm.2_Silent_p.I537I|YY1AP1_uc001fli.2_Silent_p.I548I|YY1AP1_uc009wqu.2_Silent_p.I381I|YY1AP1_uc001flj.2_Silent_p.I528I|YY1AP1_uc009wqw.2_Silent_p.I517I|YY1AP1_uc001flo.2_Silent_p.I482I|YY1AP1_uc001flp.2_Silent_p.I548I	NM_139118	NP_620829	Q9H869	YYAP1_HUMAN	YY1-associated protein isoform 2	594					regulation of cell cycle|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	protein binding			ovary(2)|skin(1)	3	Hepatocellular(266;0.0997)|all_hematologic(923;0.145)					ATGCAGGGTGGATAACAGGGG	0.532													16	76					0	0	0.00121646	0	0
FCRL5	83416	broad.mit.edu	37	1	157497579	157497579	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:157497579G>A	uc001fqu.2	-	9	1946	c.1788C>T	c.(1786-1788)ATC>ATT	p.I596I	FCRL5_uc009wsm.2_Silent_p.I596I|FCRL5_uc010phv.1_Silent_p.I596I|FCRL5_uc010phw.1_Silent_p.I511I	NM_031281	NP_112571	Q96RD9	FCRL5_HUMAN	Fc receptor-like 5	596	Extracellular (Potential).|Ig-like C2-type 6.					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(2)|central_nervous_system(1)	6	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.231)				ACCAGTACAGGATTGGGGGAG	0.597													10	47					0	0	0.000673444	0	0
FCRL5	83416	broad.mit.edu	37	1	157514647	157514647	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:157514647G>A	uc001fqu.2	-	4	691	c.533C>T	c.(532-534)TCC>TTC	p.S178F	FCRL5_uc009wsm.2_Missense_Mutation_p.S178F|FCRL5_uc010phv.1_Missense_Mutation_p.S178F|FCRL5_uc010phw.1_Missense_Mutation_p.S93F|FCRL5_uc001fqv.1_Missense_Mutation_p.S178F|FCRL5_uc010phx.1_5'UTR	NM_031281	NP_112571	Q96RD9	FCRL5_HUMAN	Fc receptor-like 5	178	Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(2)|central_nervous_system(1)	6	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.231)				GACTGTATTGGAAGAAACAGG	0.398													24	39					0	0	0.00106085	0	0
SPTA1	6708	broad.mit.edu	37	1	158647515	158647515	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:158647515C>T	uc001fst.1	-	7	1121	c.922G>A	c.(922-924)GGA>AGA	p.G308R		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	308	Spectrin 4.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					CTCTCAAGTCCCTTGTGACTG	0.463													3	6					0	0	0.00024832	0	0
FCER1A	2205	broad.mit.edu	37	1	159273743	159273743	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:159273743G>A	uc001ftq.2	+	4	201	c.102G>A	c.(100-102)TTG>TTA	p.L34L		NM_002001	NP_001992	P12319	FCERA_HUMAN	Fc fragment of IgE, high affinity I, receptor	34	Extracellular (Potential).|Ig-like 1.					integral to plasma membrane				lung(2)|skin(2)|prostate(1)	5	all_hematologic(112;0.0429)				Benzylpenicilloyl Polylysine(DB00895)|Omalizumab(DB00043)	AGGTCTCCTTGAACCCTCCAT	0.353													12	20					0	0	0.00185496	0	0
OR10J5	127385	broad.mit.edu	37	1	159505536	159505536	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:159505536G>A	uc010piw.1	-	1	262	c.262C>T	c.(262-264)CAT>TAT	p.H88Y		NM_001004469	NP_001004469	Q8NHC4	O10J5_HUMAN	olfactory receptor, family 10, subfamily J,	88	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_hematologic(112;0.0429)					GGTTGGTTATGAAAAATGAGG	0.438													19	21					0	0	0.000958276	0	0
PVRL4	81607	broad.mit.edu	37	1	161044155	161044155	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:161044155C>T	uc001fxo.2	-	6	1308	c.1009G>A	c.(1009-1011)GAA>AAA	p.E337K	PVRL4_uc010pjy.1_Missense_Mutation_p.E16K|PVRL4_uc010pjz.1_Missense_Mutation_p.E71K	NM_030916	NP_112178	Q96NY8	PVRL4_HUMAN	poliovirus receptor-related 4 precursor	337	Extracellular (Potential).				adherens junction organization|cell adhesion|cell junction assembly	adherens junction|extracellular region|integral to membrane				ovary(2)	2	all_cancers(52;8.9e-20)|Breast(13;0.00188)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00165)			CCAGAGTCTTCCTGGGGGTCT	0.602													20	34					0	0	0.00229938	0	0
PVRL4	81607	broad.mit.edu	37	1	161049597	161049597	+	Silent	SNP	T	C	C			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:161049597T>C	uc001fxo.2	-	2	521	c.222A>G	c.(220-222)GAA>GAG	p.E74E		NM_030916	NP_112178	Q96NY8	PVRL4_HUMAN	poliovirus receptor-related 4 precursor	74	Ig-like V-type 1.|Extracellular (Potential).				adherens junction organization|cell adhesion|cell junction assembly	adherens junction|extracellular region|integral to membrane				ovary(2)	2	all_cancers(52;8.9e-20)|Breast(13;0.00188)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00165)			CCTGGGCGCCTTCGCCCGCGT	0.682													41	60					0	0	0.000781405	0	0
FCGR3B	2215	broad.mit.edu	37	1	161599662	161599662	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:161599662G>A	uc009wul.2	-	3	499	c.225C>T	c.(223-225)TTC>TTT	p.F75F		NM_000570	NP_000561	O75015	FCG3B_HUMAN	low affinity immunoglobulin gamma Fc region	75	Ig-like C2-type 1.				immune response	anchored to membrane|extracellular region|plasma membrane	IgG binding|receptor activity				0	all_cancers(52;4.89e-16)|all_hematologic(112;0.0207)		BRCA - Breast invasive adenocarcinoma(70;0.00376)		Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	CAGCGTCAATGAAGTAGCTCG	0.542													24	90					0	0	0.00127121	0	0
NOS1AP	9722	broad.mit.edu	37	1	162335313	162335313	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:162335313C>T	uc001gbv.2	+	9	1446	c.1059C>T	c.(1057-1059)GTC>GTT	p.V353V	NOS1AP_uc010pks.1_RNA|NOS1AP_uc001gbw.2_Silent_p.V348V|NOS1AP_uc009wut.1_Silent_p.V58V	NM_014697	NP_055512	O75052	CAPON_HUMAN	nitric oxide synthase 1 (neuronal) adaptor	353	Potential.				regulation of apoptosis|regulation of nitric oxide biosynthetic process|regulation of nitric-oxide synthase activity		nitric-oxide synthase binding|PDZ domain binding			lung(2)|upper_aerodigestive_tract(1)	3	all_hematologic(112;0.203)		BRCA - Breast invasive adenocarcinoma(70;0.0537)			CCCTGCTGGTCAAGCAGGTGC	0.602													5	47					0	0	0.00198382	0	0
FMO2	2327	broad.mit.edu	37	1	171174706	171174706	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:171174706C>T	uc001ghk.1	+	7	1233	c.1116C>T	c.(1114-1116)ATC>ATT	p.I372I	FMO2_uc010pmd.1_Silent_p.I152I	NM_001460	NP_001451	Q99518	FMO2_HUMAN	flavin containing monooxygenase 2	372					drug metabolic process|NADPH oxidation|organic acid metabolic process|toxin metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|host cell microsome|integral to membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity|NADP binding			skin(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					TTGGTCTCATCCAGCCCCTAG	0.458													4	20					0	0	0.000602214	0	0
FMO2	2327	broad.mit.edu	37	1	171178045	171178045	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:171178045C>T	uc001ghk.1	+	9	1486	c.1369C>T	c.(1369-1371)CCT>TCT	p.P457S	FMO2_uc010pmd.1_Missense_Mutation_p.P237S	NM_001460	NP_001451	Q99518	FMO2_HUMAN	flavin containing monooxygenase 2	457					drug metabolic process|NADPH oxidation|organic acid metabolic process|toxin metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|host cell microsome|integral to membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity|NADP binding			skin(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					GTTCAAAGATCCTAAACTGGC	0.502													38	55					0	0	0.00285205	0	0
MYOC	4653	broad.mit.edu	37	1	171605701	171605701	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:171605701C>T	uc001ghu.2	-	3	901	c.879G>A	c.(877-879)ACG>ACA	p.T293T	MYOC_uc010pmk.1_Silent_p.T235T	NM_000261	NP_000252	Q99972	MYOC_HUMAN	myocilin precursor	293	Olfactomedin-like.		T -> K (in GLC1A).		anatomical structure morphogenesis	cilium|extracellular space|rough endoplasmic reticulum	structural molecule activity			lung(1)	1	all_cancers(6;5.47e-10)|all_hematologic(923;0.088)|Acute lymphoblastic leukemia(37;0.181)					GGCGGACATCCGTGCCAACTG	0.537													9	45					0	0	0.000442599	0	0
RC3H1	149041	broad.mit.edu	37	1	173951933	173951933	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:173951933A>G	uc001gju.3	-	4	787	c.700T>C	c.(700-702)TTT>CTT	p.F234L	RC3H1_uc010pms.1_Missense_Mutation_p.F234L|RC3H1_uc001gjv.2_Missense_Mutation_p.F234L|RC3H1_uc010pmt.1_Missense_Mutation_p.F234L	NM_172071	NP_742068	Q5TC82	RC3H1_HUMAN	roquin	234					cytoplasmic mRNA processing body assembly|negative regulation of activated T cell proliferation|negative regulation of B cell proliferation|negative regulation of germinal center formation|negative regulation of T-helper cell differentiation|nuclear-transcribed mRNA catabolic process|regulation of mRNA stability|regulation of T cell receptor signaling pathway	cytoplasmic mRNA processing body|stress granule	mRNA 3'-UTR binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(2)	2						GCTTGAGGAAACCGTGGCTCC	0.433													46	63					0	0	0.000781405	0	0
TNN	63923	broad.mit.edu	37	1	175105030	175105031	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:175105030_175105031GG>AA	uc001gkl.1	+	16	3493_3494	c.3380_3381GG>AA	c.(3379-3381)AGG>AAA	p.R1127K		NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	1127	Fibrinogen C-terminal.				cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		AAGCGATGGAGGAGCTATGTGG	0.535													16	77					0	0	6.4e-05	0	0
PAPPA2	60676	broad.mit.edu	37	1	176668481	176668481	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:176668481C>T	uc001gkz.2	+	8	4156	c.2992C>T	c.(2992-2994)CCC>TCC	p.P998S	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	998					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						GCACCTGGGCCCCTTAGACAC	0.522													47	84					0	0	0.000781405	0	0
FAM5B	57795	broad.mit.edu	37	1	177225132	177225132	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:177225132C>T	uc001glf.2	+	3	659	c.347C>T	c.(346-348)CCA>CTA	p.P116L	FAM5B_uc010pna.1_5'UTR|FAM5B_uc001glg.2_5'Flank	NM_021165	NP_066988	Q9C0B6	FAM5B_HUMAN	family with sequence similarity 5, member B	116						extracellular region				skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6						CCTCTTGCCCCAGAGTTTATC	0.468											OREG0014006	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	11	77					0	0	0.000673444	0	0
RASAL2	9462	broad.mit.edu	37	1	178427145	178427145	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:178427145C>T	uc001glr.2	+	12	2420	c.2295C>T	c.(2293-2295)CCC>CCT	p.P765P	RASAL2_uc001glq.2_Silent_p.P906P|RASAL2_uc009wxc.2_Silent_p.P279P	NM_004841	NP_004832	Q9UJF2	NGAP_HUMAN	RAS protein activator like 2 isoform 1	765					negative regulation of Ras protein signal transduction|signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	Ras GTPase activator activity			ovary(2)|breast(2)|large_intestine(1)	5						TGAGAAGGCCCCTGCACCCAG	0.572													32	50					0	0	0.00178596	0	0
CACNA1E	777	broad.mit.edu	37	1	181726163	181726163	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:181726163C>T	uc001gow.2	+	30	4395	c.4230C>T	c.(4228-4230)TTC>TTT	p.F1410F	CACNA1E_uc009wxs.2_Silent_p.F1298F|CACNA1E_uc001gox.1_Silent_p.F636F|CACNA1E_uc009wxt.2_Silent_p.F636F	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	1410	III.|Helical; Name=S6 of repeat III.				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						TTGTGGTCTTCCCCTTCTTCT	0.488													10	69					0	0	0.000442599	0	0
HMCN1	83872	broad.mit.edu	37	1	186024595	186024595	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:186024595C>T	uc001grq.1	+	45	7162	c.6933C>T	c.(6931-6933)TCC>TCT	p.S2311S		NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	2311	Ig-like C2-type 21.				response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						AGAGTATCTCCTTGGAGTGTG	0.478													3	6					0	0	0.00024832	0	0
TPR	7175	broad.mit.edu	37	1	186287932	186287932	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:186287932G>A	uc001grv.2	-	47	6894	c.6597C>T	c.(6595-6597)TTC>TTT	p.F2199F		NM_003292	NP_003283	P12270	TPR_HUMAN	nuclear pore complex-associated protein TPR	2199					carbohydrate metabolic process|glucose transport|mitotic cell cycle spindle assembly checkpoint|mRNA transport|protein import into nucleus|regulation of glucose transport|seryl-tRNA aminoacylation|transmembrane transport|viral reproduction	condensed chromosome kinetochore|cytoplasm|nuclear membrane|nuclear pore|nucleoplasm	ATP binding|protein binding|serine-tRNA ligase activity			ovary(2)|lung(2)|urinary_tract(1)|central_nervous_system(1)|skin(1)	7		Breast(1374;0.000659)|Lung SC(1967;0.0262)|Prostate(1639;0.157)		Colorectal(1306;1.12e-05)|KIRC - Kidney renal clear cell carcinoma(1967;0.00553)		CATGAGCTAGGAACAGGGGTG	0.403			T	NTRK1	papillary thyroid								19	83					0	0	0.00121646	0	0
KIF14	9928	broad.mit.edu	37	1	200523671	200523671	+	Missense_Mutation	SNP	T	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:200523671T>A	uc010ppk.1	-	29	4931	c.4492A>T	c.(4492-4494)AAT>TAT	p.N1498Y	KIF14_uc010ppj.1_Missense_Mutation_p.N1007Y	NM_014875	NP_055690	Q15058	KIF14_HUMAN	kinesin family member 14	1498	Required for CIT-binding.|Potential.				microtubule-based movement	cytoplasm|microtubule|nucleus|spindle	ATP binding|microtubule motor activity|protein binding			breast(3)|ovary(2)|skin(2)	7						GGAGCACGATTAACCATCCTC	0.274													21	33					0	0	0.00278032	0	0
C1orf106	55765	broad.mit.edu	37	1	200880799	200880799	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:200880799C>T	uc001gvo.2	+	9	1463	c.1433C>T	c.(1432-1434)TCC>TTC	p.S478F	C1orf106_uc010ppm.1_Missense_Mutation_p.S393F	NM_018265	NP_060735	Q3KP66	CA106_HUMAN	hypothetical protein LOC55765 isoform 1	478										skin(2)|ovary(1)	3						CCCGACATCTCCTTTCTGCAG	0.677													23	68					0	0	0.00229938	0	0
PKP1	5317	broad.mit.edu	37	1	201282611	201282611	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:201282611C>T	uc001gwd.2	+	3	875	c.624C>T	c.(622-624)TCC>TCT	p.S208S	PKP1_uc001gwe.2_Silent_p.S208S|PKP1_uc009wzm.2_Intron	NM_000299	NP_000290	Q13835	PKP1_HUMAN	plakophilin 1 isoform 1b	208					cell adhesion|cellular component disassembly involved in apoptosis|multicellular organismal development	desmosome|intermediate filament|nucleus	intermediate filament binding|signal transducer activity|structural constituent of epidermis			ovary(2)	2						CTTGTGCCTCCAAGCAGGACC	0.592													8	29					0	0	0.000673444	0	0
NFASC	23114	broad.mit.edu	37	1	204944489	204944489	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:204944489C>T	uc001hbj.2	+	15	1977	c.1649C>T	c.(1648-1650)TCC>TTC	p.S550F	NFASC_uc001hbh.2_Missense_Mutation_p.S550F|NFASC_uc010pqz.1_Missense_Mutation_p.S544F|NFASC_uc010pra.1_Missense_Mutation_p.S561F|NFASC_uc001hbi.2_Missense_Mutation_p.S561F|NFASC_uc010prb.1_Missense_Mutation_p.S561F|NFASC_uc010prc.1_Missense_Mutation_p.S117F|NFASC_uc001hbk.1_Missense_Mutation_p.S371F	NM_001005388	NP_001005388	O94856	NFASC_HUMAN	neurofascin isoform 1 precursor	550	Extracellular (Potential).|Ig-like C2-type 6.				axon guidance|cell adhesion|myelination|peripheral nervous system development	integral to membrane|node of Ranvier|plasma membrane	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6	all_cancers(21;0.0375)|Breast(84;0.0437)|all_epithelial(62;0.171)|Prostate(682;0.19)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.158)			CACGACCCCTCCCTGAAACTC	0.597											OREG0014142	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	62	78					0	0	0.000781405	0	0
IL10	3586	broad.mit.edu	37	1	206942019	206942019	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:206942019A>G	uc001hen.1	-	5	558	c.499T>C	c.(499-501)TAC>CAC	p.Y167H		NM_000572	NP_000563	P22301	IL10_HUMAN	interleukin 10 precursor	167					anti-apoptosis|B cell differentiation|B cell proliferation|cytoplasmic sequestering of NF-kappaB|inflammatory response|leukocyte chemotaxis|negative regulation of B cell proliferation|negative regulation of cytokine secretion involved in immune response|negative regulation of interferon-alpha biosynthetic process|negative regulation of interleukin-6 production|negative regulation of membrane protein ectodomain proteolysis|negative regulation of MHC class II biosynthetic process|negative regulation of T cell proliferation|positive regulation of B cell apoptosis|positive regulation of cytokine secretion|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription, DNA-dependent|receptor biosynthetic process|regulation of isotype switching|response to glucocorticoid stimulus|type 2 immune response	extracellular space	cytokine activity|growth factor activity|interleukin-10 receptor binding				0	Breast(84;0.183)		BRCA - Breast invasive adenocarcinoma(75;0.211)			GCTTCTATGTAGTTGATGAAG	0.413													3	57					0	0	0.00024832	0	0
PIGR	5284	broad.mit.edu	37	1	207103753	207103753	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:207103753G>A	uc001hez.2	-	11	2389	c.2205C>T	c.(2203-2205)TCC>TCT	p.S735S	PIGR_uc009xbz.2_Silent_p.S735S	NM_002644	NP_002635	P01833	PIGR_HUMAN	polymeric immunoglobulin receptor precursor	735	Cytoplasmic (Potential).					extracellular region|integral to plasma membrane	protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3						CTTCCTCCTTGGATGACTAAG	0.617													5	52					0	0	0.00116845	0	0
CR1	1378	broad.mit.edu	37	1	207793378	207793378	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:207793378G>A	uc001hfy.2	+	35	6010	c.5870G>A	c.(5869-5871)AGA>AAA	p.R1957K	CR1_uc001hfx.2_Missense_Mutation_p.R2407K	NM_000573	NP_000564	P17927	CR1_HUMAN	complement receptor 1 isoform F precursor	1957	Sushi 30.|Extracellular (Potential).				complement activation, classical pathway|innate immune response	integral to plasma membrane	complement receptor activity			ovary(3)	3						GCGGATGACAGATGGGACCCT	0.463											OREG0014194	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	10					0	0	0.000157383	0	0
HSD11B1	3290	broad.mit.edu	37	1	209907681	209907681	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:209907681C>T	uc001hhj.2	+	7	801	c.694C>T	c.(694-696)CAT>TAT	p.H232Y	HSD11B1_uc001hhk.2_Missense_Mutation_p.H232Y	NM_181755	NP_861420	P28845	DHI1_HUMAN	11-beta-hydroxysteroid dehydrogenase 1	232	Lumenal (Potential).				glucocorticoid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	11-beta-hydroxysteroid dehydrogenase (NADP+) activity|11-beta-hydroxysteroid dehydrogenase|binding			breast(1)	1				OV - Ovarian serous cystadenocarcinoma(81;1.04e-55)|Epithelial(68;1.57e-52)|all cancers(67;1.83e-46)|Colorectal(1306;0.115)	NADH(DB00157)	TGGGATAGTCCATATGCAAGC	0.488													5	13					0	0	0.00116845	0	0
TRAF3IP3	80342	broad.mit.edu	37	1	209936736	209936736	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:209936736A>T	uc001hho.2	+	7	895	c.605A>T	c.(604-606)AAA>ATA	p.K202I	TRAF3IP3_uc001hhl.2_Missense_Mutation_p.K182I|TRAF3IP3_uc001hhm.1_Missense_Mutation_p.K202I|TRAF3IP3_uc001hhn.2_Missense_Mutation_p.K182I|TRAF3IP3_uc009xcr.2_Missense_Mutation_p.K202I	NM_025228	NP_079504	Q9Y228	T3JAM_HUMAN	TRAF3-interacting JNK-activating modulator	202	Cytoplasmic (Potential).					integral to membrane	protein binding			large_intestine(1)|ovary(1)	2				OV - Ovarian serous cystadenocarcinoma(81;0.045)		GATTACCTCAAAGTAAGTGGC	0.502													48	77					0	0	0.000781405	0	0
KCNH1	3756	broad.mit.edu	37	1	211192238	211192238	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:211192238C>T	uc001hib.2	-	6	1089	c.919G>A	c.(919-921)GAT>AAT	p.D307N	KCNH1_uc001hic.2_Missense_Mutation_p.D307N	NM_172362	NP_758872	O95259	KCNH1_HUMAN	potassium voltage-gated channel, subfamily H,	307	Helical; Name=Segment S3; (Potential).				myoblast fusion|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	calmodulin binding|delayed rectifier potassium channel activity|two-component sensor activity			ovary(4)|central_nervous_system(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.0109)|all cancers(67;0.141)|Epithelial(68;0.185)		TTGATGACATCATATGGCAAA	0.483													25	26					0	0	0.000878237	0	0
BATF3	55509	broad.mit.edu	37	1	212870375	212870376	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:212870375_212870376CC>TT	uc001hjl.1	-	2	345_346	c.122_123GG>AA	c.(121-123)AGG>AAA	p.R41K		NM_018664	NP_061134	Q9NR55	BATF3_HUMAN	basic leucine zipper transcription factor,	41	Basic motif.				transcription from RNA polymerase II promoter	nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity				0				OV - Ovarian serous cystadenocarcinoma(81;0.0046)|all cancers(67;0.00785)|GBM - Glioblastoma multiforme(131;0.0731)|Epithelial(68;0.0781)		TTTTTTCTCTCCTTCGGACCTT	0.559													22	48					0	0	6.4e-05	0	0
C1orf58	148362	broad.mit.edu	37	1	222904845	222904846	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:222904845_222904846CC>AA	uc001hnq.1	+	12	1531_1532	c.1136_1137CC>AA	c.(1135-1137)CCC>CAA	p.P379Q	C1orf58_uc010put.1_Missense_Mutation_p.P347Q|C1orf58_uc010puu.1_Intron|C1orf58_uc010puv.1_Missense_Mutation_p.P347Q|uc001hnr.1_Intron|uc001hns.1_5'Flank	NM_144695	NP_653296	Q5VW32	BROX_HUMAN	Bro1-domain-containing protein	379	BRO1.					membrane					0				GBM - Glioblastoma multiforme(131;0.0667)		ACCAAAAGACCCAAGGATGACA	0.356													10	287					0	0	6.4e-05	0	0
FAM177B	400823	broad.mit.edu	37	1	222922892	222922892	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:222922892G>A	uc001hnt.2	+	5	593	c.327G>A	c.(325-327)AGG>AGA	p.R109R	uc001hnr.1_Intron|FAM177B_uc009xeb.2_RNA	NM_207468	NP_997351	A6PVY3	F177B_HUMAN	hypothetical protein LOC400823	109										ovary(1)	1						AGTTCTATAGGATACAAAACA	0.393													9	35					0	0	0.000442599	0	0
DISP1	84976	broad.mit.edu	37	1	223175966	223175966	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:223175966C>T	uc001hnu.1	+	8	1374	c.1227C>T	c.(1225-1227)CTC>CTT	p.L409L		NM_032890	NP_116279	Q96F81	DISP1_HUMAN	dispatched A	409					diaphragm development|protein homotrimerization|regulation of protein secretion|smoothened signaling pathway	basolateral plasma membrane|integral to membrane	hedgehog receptor activity|peptide transporter activity				0				GBM - Glioblastoma multiforme(131;0.102)		AGGACCAGCTCAAGTGCACCA	0.507											OREG0014268|OREG0026708	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	163	284					0	0	0.000781405	0	0
OBSCN	84033	broad.mit.edu	37	1	228432088	228432088	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:228432088C>T	uc009xez.1	+	11	3341	c.3297C>T	c.(3295-3297)GCC>GCT	p.A1099A	OBSCN_uc001hsn.2_Silent_p.A1099A	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	1099	Ig-like 11.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				GTGAGGTGGCCCAGGCCCAGA	0.597													17	51					0	0	0.00074312	0	0
PGBD5	79605	broad.mit.edu	37	1	230468618	230468618	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:230468618C>T	uc010pwb.1	-	5	1038	c.1038G>A	c.(1036-1038)CTG>CTA	p.L346L	PGBD5_uc001htv.2_Silent_p.L445L	NM_024554	NP_078830	Q8N414	PGBD5_HUMAN	piggyBac transposable element derived 5	346						integral to membrane				ovary(2)|central_nervous_system(1)|skin(1)	4	Breast(184;0.0397)	Prostate(94;0.167)		GBM - Glioblastoma multiforme(131;0.201)		AGGCGTTGGTCAGGAAGCGGA	0.632													17	66					0	0	0.000958276	0	0
KIF26B	55083	broad.mit.edu	37	1	245865806	245865806	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:245865806G>A	uc001ibf.1	+	15	6665	c.6225G>A	c.(6223-6225)GAG>GAA	p.E2075E		NM_018012	NP_060482	Q2KJY2	KI26B_HUMAN	kinesin family member 26B	2075					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)	3	all_cancers(71;3.86e-05)|all_epithelial(71;0.000121)|Ovarian(71;0.0412)|all_lung(81;0.0498)|Lung NSC(105;0.0708)|Breast(184;0.127)		OV - Ovarian serous cystadenocarcinoma(106;0.022)			AGTACCTGGAGGCACTGGAGT	0.572													28	42					0	0	0.00127121	0	0
NLRP3	114548	broad.mit.edu	37	1	247587774	247587774	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:247587774G>A	uc001icr.2	+	5	1167	c.1029G>A	c.(1027-1029)GAG>GAA	p.E343E	NLRP3_uc001ics.2_Silent_p.E343E|NLRP3_uc001icu.2_Silent_p.E343E|NLRP3_uc001icw.2_Silent_p.E343E|NLRP3_uc001icv.2_Silent_p.E343E|NLRP3_uc010pyw.1_Silent_p.E341E|NLRP3_uc001ict.1_Silent_p.E341E	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	343	NACHT.				detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding			lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			TGCTTCCCGAGGCCTCTCTGC	0.592													16	70					0	0	0.00074312	0	0
NLRP3	114548	broad.mit.edu	37	1	247587957	247587957	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:247587957C>T	uc001icr.2	+	5	1350	c.1212C>T	c.(1210-1212)GTC>GTT	p.V404V	NLRP3_uc001ics.2_Silent_p.V404V|NLRP3_uc001icu.2_Silent_p.V404V|NLRP3_uc001icw.2_Silent_p.V404V|NLRP3_uc001icv.2_Silent_p.V404V|NLRP3_uc010pyw.1_Silent_p.V402V|NLRP3_uc001ict.1_Silent_p.V402V	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	404	NACHT.				detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding			lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			AGAACGAGGTCCTCTTCACCA	0.532													5	31					0	0	0.00116845	0	0
OR2T33	391195	broad.mit.edu	37	1	248436400	248436400	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:248436400G>A	uc010pzi.1	-	1	717	c.717C>T	c.(715-717)TGC>TGT	p.C239C		NM_001004695	NP_001004695	Q8NG76	O2T33_HUMAN	olfactory receptor, family 2, subfamily T,	239	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)	2	all_cancers(71;0.000124)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			CATGTGAAGAGCAGGTGGCAA	0.512													16	37					0	0	0.00074312	0	0
OR14C36	127066	broad.mit.edu	37	1	248512884	248512884	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:248512884C>G	uc010pzl.1	+	1	808	c.808C>G	c.(808-810)CTG>GTG	p.L270V		NM_001001918	NP_001001918	Q8NHC7	O14CZ_HUMAN	olfactory receptor, family 14, subfamily C,	270	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3						CACCCAGGATCTGATCCTTTC	0.453													7	38					0	0	0.00198382	0	0
OR14I1	401994	broad.mit.edu	37	1	248844962	248844962	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr1:248844962G>A	uc001ieu.1	-	1	644	c.644C>T	c.(643-645)TCC>TTC	p.S215F		NM_001004734	NP_001004734	A6ND48	O14I1_HUMAN	olfactory receptor, family 14, subfamily I,	215	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TTGGAAATAGGAGATCATCAT	0.493													31	42					0	0	0.000814825	0	0
ITGA8	8516	broad.mit.edu	37	10	15647736	15647736	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr10:15647736G>A	uc001ioc.1	-	19	1957	c.1957C>T	c.(1957-1959)CTG>TTG	p.L653L	ITGA8_uc010qcb.1_Silent_p.L638L	NM_003638	NP_003629	P53708	ITA8_HUMAN	integrin, alpha 8 precursor	653	Extracellular (Potential).				cell differentiation|cell-cell adhesion|cell-matrix adhesion|integrin-mediated signaling pathway|nervous system development	integrin complex	receptor activity			ovary(3)|lung(3)	6						CTAGCCGACAGCTTCAAGTCA	0.388													6	26					0	0	0.000157383	0	0
SLC39A12	221074	broad.mit.edu	37	10	18242235	18242235	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr10:18242235C>T	uc001ipo.2	+	2	303	c.30C>T	c.(28-30)TCC>TCT	p.S10S	SLC39A12_uc001ipn.2_Silent_p.S10S|SLC39A12_uc001ipp.2_Silent_p.S10S|SLC39A12_uc010qck.1_Intron	NM_001145195	NP_001138667	Q504Y0	S39AC_HUMAN	solute carrier family 39 (zinc transporter),	10	Extracellular (Potential).				zinc ion transport	integral to membrane	metal ion transmembrane transporter activity			ovary(1)|breast(1)	2						TCTCAGTATCCTGGGTGCCAT	0.517													27	48					0	0	0.000586117	0	0
CACNB2	783	broad.mit.edu	37	10	18690890	18690890	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr10:18690890C>T	uc001ipr.2	+	3	311	c.251C>T	c.(250-252)TCC>TTC	p.S84F	CACNB2_uc009xjz.1_Missense_Mutation_p.S84F|CACNB2_uc001ips.2_Missense_Mutation_p.S84F|CACNB2_uc001ipt.2_Missense_Mutation_p.S84F|CACNB2_uc010qcl.1_RNA|CACNB2_uc001ipu.2_Missense_Mutation_p.S56F|CACNB2_uc001ipv.2_Missense_Mutation_p.S56F|CACNB2_uc009xka.1_Missense_Mutation_p.S56F|CACNB2_uc001ipw.2_Missense_Mutation_p.S29F|CACNB2_uc001ipx.2_Missense_Mutation_p.S29F|CACNB2_uc009xkb.1_Missense_Mutation_p.S30F|CACNB2_uc010qcm.1_Missense_Mutation_p.S30F|CACNB2_uc001ipz.2_Missense_Mutation_p.S30F|CACNB2_uc001ipy.2_Missense_Mutation_p.S30F|CACNB2_uc010qcn.1_Missense_Mutation_p.S36F|CACNB2_uc010qco.1_Missense_Mutation_p.S36F|CACNB2_uc001iqa.2_Missense_Mutation_p.S36F	NM_201596	NP_963890	Q08289	CACB2_HUMAN	calcium channel, voltage-dependent, beta 2	84					axon guidance|neuromuscular junction development	integral to plasma membrane|sarcolemma|voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity			large_intestine(1)|central_nervous_system(1)|skin(1)	3					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	CCATCCGATTCCGATGTATCT	0.502													13	26					0	0	0.00185496	0	0
CACNB2	783	broad.mit.edu	37	10	18803206	18803206	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr10:18803206G>A	uc001ipr.2	+	7	772	c.712G>A	c.(712-714)GAT>AAT	p.D238N	CACNB2_uc009xjz.1_Intron|CACNB2_uc001ips.2_Intron|CACNB2_uc001ipt.2_Intron|CACNB2_uc010qcl.1_Intron|CACNB2_uc001ipu.2_Missense_Mutation_p.D210N|CACNB2_uc001ipv.2_Intron|CACNB2_uc009xka.1_Intron|CACNB2_uc001ipw.2_Intron|CACNB2_uc001ipx.2_Missense_Mutation_p.D183N|CACNB2_uc009xkb.1_Intron|CACNB2_uc010qcm.1_Missense_Mutation_p.D184N|CACNB2_uc001ipz.2_Intron|CACNB2_uc001ipy.2_Missense_Mutation_p.D184N|CACNB2_uc010qcn.1_Intron|CACNB2_uc010qco.1_Intron|CACNB2_uc001iqa.2_Missense_Mutation_p.D190N|NSUN6_uc001iqb.2_Intron	NM_201596	NP_963890	Q08289	CACB2_HUMAN	calcium channel, voltage-dependent, beta 2	238					axon guidance|neuromuscular junction development	integral to plasma membrane|sarcolemma|voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity			large_intestine(1)|central_nervous_system(1)|skin(1)	3					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	AGAAGAAAATGATATTCCAGC	0.398													8	50					0	0	0.000157383	0	0
NEBL	10529	broad.mit.edu	37	10	21074722	21074722	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr10:21074722C>T	uc001iqi.2	-	28	3396	c.2999G>A	c.(2998-3000)GGG>GAG	p.G1000E	NEBL_uc001iqj.2_RNA|NEBL_uc001iqk.2_Missense_Mutation_p.G256E	NM_006393	NP_006384	O76041	NEBL_HUMAN	nebulette sarcomeric isoform	1000	SH3.				regulation of actin filament length		actin binding|structural constituent of muscle			ovary(2)	2						TCCTGTTCTCCCTGTTCTCTG	0.458													12	19					0	0	0.00136819	0	0
NEBL	10529	broad.mit.edu	37	10	21108375	21108375	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr10:21108375C>T	uc001iqi.2	-	20	2430	c.2033G>A	c.(2032-2034)CGA>CAA	p.R678Q	NEBL_uc001iqj.2_RNA|NEBL_uc001iqk.2_Intron|NEBL_uc001iql.1_RNA	NM_006393	NP_006384	O76041	NEBL_HUMAN	nebulette sarcomeric isoform	678	Nebulin 19.				regulation of actin filament length		actin binding|structural constituent of muscle			ovary(2)	2						CTCCTGGTTTCGCCTCACTCT	0.408													19	124					0	0	0.00229938	0	0
KIAA1217	56243	broad.mit.edu	37	10	24762620	24762620	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr10:24762620A>G	uc001iru.3	+	6	1713	c.1310A>G	c.(1309-1311)AAC>AGC	p.N437S	KIAA1217_uc001irs.2_Missense_Mutation_p.N357S|KIAA1217_uc001irt.3_Missense_Mutation_p.N437S|KIAA1217_uc010qcy.1_Missense_Mutation_p.N437S|KIAA1217_uc010qcz.1_Missense_Mutation_p.N437S|KIAA1217_uc001irv.1_Missense_Mutation_p.N287S|KIAA1217_uc010qda.1_RNA|KIAA1217_uc001irw.2_Missense_Mutation_p.N155S|KIAA1217_uc001irz.2_Missense_Mutation_p.N155S|KIAA1217_uc001irx.2_Missense_Mutation_p.N155S|KIAA1217_uc001iry.2_Missense_Mutation_p.N155S	NM_019590	NP_062536	Q5T5P2	SKT_HUMAN	sickle tail isoform 1	437					embryonic skeletal system development	cytoplasm				ovary(5)|skin(2)	7						GCTTATTGTAACCCCTCAATG	0.498													8	45					0	0	0.000157383	0	0
KIAA1217	56243	broad.mit.edu	37	10	24810711	24810711	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr10:24810711G>A	uc001iru.3	+	12	2712	c.2309G>A	c.(2308-2310)GGA>GAA	p.G770E	KIAA1217_uc001irs.2_Missense_Mutation_p.G690E|KIAA1217_uc001irt.3_Missense_Mutation_p.G735E|KIAA1217_uc010qcy.1_Missense_Mutation_p.G735E|KIAA1217_uc010qcz.1_Missense_Mutation_p.G735E|KIAA1217_uc001irv.1_Missense_Mutation_p.G585E|KIAA1217_uc010qda.1_Intron|KIAA1217_uc001irw.2_Missense_Mutation_p.G453E|KIAA1217_uc001irz.2_Missense_Mutation_p.G453E|KIAA1217_uc001irx.2_Missense_Mutation_p.G453E|KIAA1217_uc001iry.2_Missense_Mutation_p.G453E	NM_019590	NP_062536	Q5T5P2	SKT_HUMAN	sickle tail isoform 1	770					embryonic skeletal system development	cytoplasm				ovary(5)|skin(2)	7						GGGCCTGCAGGAGAATTTCCA	0.527													22	129					0	0	0.000586117	0	0
MYO3A	53904	broad.mit.edu	37	10	26463297	26463297	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr10:26463297G>A	uc001isn.2	+	30	4464	c.4104G>A	c.(4102-4104)AAG>AAA	p.K1368K	MYO3A_uc009xkp.1_Intron|MYO3A_uc009xkq.1_Intron	NM_017433	NP_059129	Q8NEV4	MYO3A_HUMAN	myosin IIIA	1368	IQ 3.				protein autophosphorylation|response to stimulus|sensory perception of sound|visual perception	cytoplasm|filamentous actin|filopodium|myosin complex	actin binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|plus-end directed microfilament motor activity|protein serine/threonine kinase activity			ovary(6)|stomach(3)|lung(3)|central_nervous_system(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	18						AGTTGAGGAAGGACAAGATGT	0.433													10	34					0	0	0.000442599	0	0
PTCHD3	374308	broad.mit.edu	37	10	27687287	27687287	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr10:27687287G>A	uc001itu.2	-	4	2358	c.2240C>T	c.(2239-2241)TCC>TTC	p.S747F		NM_001034842	NP_001030014	Q3KNS1	PTHD3_HUMAN	patched domain containing 3	747					spermatid development	integral to membrane	hedgehog receptor activity			ovary(2)|pancreas(1)|skin(1)	4						GAAGCCCCGGGAAGAAATGAT	0.318													15	23					0	0	0.000422831	0	0
SYT15	83849	broad.mit.edu	37	10	46969437	46969437	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr10:46969437C>T	uc001jea.2	-	2	177	c.24G>A	c.(22-24)GTG>GTA	p.V8V	SYT15_uc001jdz.2_Silent_p.V8V|SYT15_uc001jeb.2_Intron|SYT15_uc010qfp.1_5'Flank	NM_031912	NP_114118	Q9BQS2	SYT15_HUMAN	synaptotagmin XV isoform a	8	Helical; Signal-anchor for type III membrane protein; (Potential).					integral to membrane|plasma membrane					0						TGCCCCCAATCACCAGGGCCA	0.627													7	14					0	0	0.000157383	0	0
RBP3	5949	broad.mit.edu	37	10	48389018	48389018	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr10:48389018C>T	uc001jez.2	-	1	1974	c.1860G>A	c.(1858-1860)GAG>GAA	p.E620E		NM_002900	NP_002891	P10745	RET3_HUMAN	retinol-binding protein 3 precursor	620	4 X approximate tandem repeats.|2.				lipid metabolic process|proteolysis|transport|visual perception	interphotoreceptor matrix	retinal binding|serine-type peptidase activity			large_intestine(1)|central_nervous_system(1)	2					Vitamin A(DB00162)	CCAGGGCCTCCTCGGCCAGCA	0.672													23	11					0	0	0.000878237	0	0
RBP3	5949	broad.mit.edu	37	10	48389692	48389692	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr10:48389692G>A	uc001jez.2	-	1	1300	c.1186C>T	c.(1186-1188)CCT>TCT	p.P396S		NM_002900	NP_002891	P10745	RET3_HUMAN	retinol-binding protein 3 precursor	396	4 X approximate tandem repeats.|2.				lipid metabolic process|proteolysis|transport|visual perception	interphotoreceptor matrix	retinal binding|serine-type peptidase activity			large_intestine(1)|central_nervous_system(1)	2					Vitamin A(DB00162)	GGCCAAGAAGGAGTTTCTGTG	0.647													16	21					0	0	0.000566183	0	0
PCDH15	65217	broad.mit.edu	37	10	55581882	55581882	+	Silent	SNP	C	T	T	rs142667566	by1000genomes	TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr10:55581882C>T	uc001jju.1	-	33	5999	c.5604G>A	c.(5602-5604)ACG>ACA	p.T1868T	PCDH15_uc010qhq.1_Intron|PCDH15_uc010qhr.1_Intron|PCDH15_uc010qhs.1_Intron|PCDH15_uc010qht.1_Intron|PCDH15_uc010qhu.1_Intron|PCDH15_uc001jjv.1_Silent_p.T722T|PCDH15_uc010qhv.1_Silent_p.T1865T|PCDH15_uc010qhw.1_Silent_p.T1828T|PCDH15_uc010qhx.1_Silent_p.T1799T|PCDH15_uc010qhy.1_Silent_p.T1875T|PCDH15_uc010qhz.1_Silent_p.T1870T|PCDH15_uc010qia.1_Silent_p.T1848T|PCDH15_uc010qib.1_Silent_p.T1845T	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	1868	Cytoplasmic (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				TACACACTGTCGTTGTTGATA	0.418										HNSCC(58;0.16)			67	56					0	0	0.000781405	0	0
PCDH15	65217	broad.mit.edu	37	10	55943312	55943312	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr10:55943312G>A	uc001jju.1	-	13	1877	c.1482C>T	c.(1480-1482)ATC>ATT	p.I494I	PCDH15_uc010qhq.1_Silent_p.I499I|PCDH15_uc010qhr.1_Silent_p.I494I|PCDH15_uc010qhs.1_Silent_p.I506I|PCDH15_uc010qht.1_Silent_p.I501I|PCDH15_uc010qhu.1_Silent_p.I494I|PCDH15_uc001jjv.1_Silent_p.I472I|PCDH15_uc010qhv.1_Silent_p.I494I|PCDH15_uc010qhw.1_Silent_p.I457I|PCDH15_uc010qhx.1_Silent_p.I494I|PCDH15_uc010qhy.1_Silent_p.I499I|PCDH15_uc010qhz.1_Silent_p.I494I|PCDH15_uc010qia.1_Silent_p.I472I|PCDH15_uc010qib.1_Silent_p.I472I|PCDH15_uc001jjw.2_Silent_p.I494I	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	494	Cadherin 4.|Extracellular (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				GAATATTGACGATGACTGGCT	0.393										HNSCC(58;0.16)			30	35					0	0	0.00283554	0	0
ANK3	288	broad.mit.edu	37	10	61959950	61959950	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr10:61959950G>A	uc001jky.2	-	13	1620	c.1428C>T	c.(1426-1428)TCC>TCT	p.S476S	ANK3_uc010qih.1_Silent_p.S459S|ANK3_uc001jkz.3_Silent_p.S470S|ANK3_uc001jlb.1_Silent_p.S5S|ANK3_uc001jlc.1_Silent_p.S137S	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	476	ANK 13.				establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						CAGCTTGGCCGGAGCGAGCTG	0.468													27	20					0	0	0.00283554	0	0
EGR2	1959	broad.mit.edu	37	10	64573920	64573920	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr10:64573920C>T	uc010qim.1	-	3	632	c.478G>A	c.(478-480)GAC>AAC	p.D160N	EGR2_uc010qin.1_Missense_Mutation_p.D110N|EGR2_uc001jmi.2_Missense_Mutation_p.D160N|EGR2_uc010qio.1_Missense_Mutation_p.D173N|EGR2_uc009xph.2_Missense_Mutation_p.D160N	NM_001136177	NP_001129649	P11161	EGR2_HUMAN	early growth response 2 protein isoform a	160					fat cell differentiation|protein export from nucleus|transcription from RNA polymerase II promoter	cytoplasm|nucleus	chromatin binding|RNA polymerase II activating transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|ubiquitin protein ligase binding|zinc ion binding			ovary(2)	2	Prostate(12;0.0297)|all_hematologic(501;0.228)					TGGTCCAGGTCAGGCTGGGTC	0.632													27	38					0	0	0.00209593	0	0
STOX1	219736	broad.mit.edu	37	10	70645727	70645727	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr10:70645727G>A	uc001jos.2	+	3	2262	c.2175G>A	c.(2173-2175)GTG>GTA	p.V725V	STOX1_uc001jor.2_Intron|STOX1_uc009xpy.2_Intron|STOX1_uc001joq.2_Silent_p.V615V	NM_001130161	NP_001123633	Q6ZVD7	STOX1_HUMAN	storkhead box 1 isoform a	725						cytoplasm|nucleolus	DNA binding			kidney(1)|skin(1)	2						AGAATGAAGTGGAAGATGATG	0.413													21	31					0	0	0.00188189	0	0
SUPV3L1	6832	broad.mit.edu	37	10	70945777	70945777	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr10:70945777G>A	uc001jpe.1	+	2	361	c.306G>A	c.(304-306)AAG>AAA	p.K102K	SUPV3L1_uc010qjd.1_5'UTR	NM_003171	NP_003162	Q8IYB8	SUV3_HUMAN	suppressor of var1, 3-like 1 precursor	102					DNA duplex unwinding	mitochondrial nucleoid|nucleus	ATP binding|DNA binding|DNA helicase activity|RNA binding			urinary_tract(1)|ovary(1)	2						AATTTTACAAGAGGAAAGAAA	0.343													63	81					0	0	0.000781405	0	0
DNAJB12	54788	broad.mit.edu	37	10	74100779	74100779	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr10:74100779G>A	uc010qjv.1	-	4	859	c.709C>T	c.(709-711)CTC>TTC	p.L237F	DNAJB12_uc001jsz.2_Missense_Mutation_p.L237F|DNAJB12_uc001jta.2_Missense_Mutation_p.L237F	NM_017626	NP_060096	Q9NXW2	DJB12_HUMAN	DnaJ (Hsp40) homolog, subfamily B, member 12	203					protein folding	endoplasmic reticulum|integral to membrane	heat shock protein binding|unfolded protein binding				0						ATGTTGAAGAGGTCTTCAGGG	0.607													8	17					0	0	0.000157383	0	0
TTC18	118491	broad.mit.edu	37	10	75082767	75082767	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr10:75082767C>T	uc009xrc.2	-	10	1197	c.1076G>A	c.(1075-1077)GGA>GAA	p.G359E	TTC18_uc001jty.2_Missense_Mutation_p.G359E|TTC18_uc009xrd.1_Missense_Mutation_p.G167E	NM_145170	NP_660153	Q5T0N1	TTC18_HUMAN	tetratricopeptide repeat domain 18	359							binding			ovary(2)|central_nervous_system(1)	3	Prostate(51;0.0119)					ATGAAAAGCTCCCCGAATTCT	0.358													30	34					0	0	0.00283554	0	0
C10orf99	387695	broad.mit.edu	37	10	85936235	85936235	+	Splice_Site	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr10:85936235G>A	uc001kcu.2	+	2	125	c.71_splice	c.e2-1	p.G24_splice		NM_207373	NP_997256	Q6UWK7	CJ099_HUMAN	hypothetical protein LOC387695 precursor							extracellular region				pancreas(1)	1						TCCACCCTCAGGGAAGAGGCG	0.552													18	27					0	0	0.000566183	0	0
RGR	5995	broad.mit.edu	37	10	86007474	86007474	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr10:86007474C>T	uc001kdc.1	+	2	245	c.207C>T	c.(205-207)GCC>GCT	p.A69A	RGR_uc001kdb.1_Missense_Mutation_p.P53S|RGR_uc001kdd.1_Silent_p.A69A|RGR_uc001kde.1_Silent_p.A69A	NM_001012720	NP_001012738	P47804	RGR_HUMAN	retinal G-protein coupled receptor isoform 2	69	Helical; Name=2; (Potential).				phototransduction|protein-chromophore linkage|visual perception	integral to plasma membrane	G-protein coupled receptor activity|photoreceptor activity|protein binding			ovary(1)	1						GCCTGAATGCCCTCGTTGCAG	0.652													14	59					0	0	0.000422831	0	0
IDE	3416	broad.mit.edu	37	10	94234693	94234694	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr10:94234693_94234694CG>AT	uc001kia.2	-	17	2096_2097	c.2020_2021CG>AT	c.(2020-2022)CGG>ATG	p.R674M	IDE_uc010qnp.1_Missense_Mutation_p.R119M|IDE_uc001khz.2_Missense_Mutation_p.R119M	NM_004969	NP_004960	P14735	IDE_HUMAN	insulin-degrading enzyme isoform 1 precursor	674					beta-amyloid metabolic process|bradykinin catabolic process|interspecies interaction between organisms|sex differentiation	cell surface|extracellular space|soluble fraction	ATP binding|metalloendopeptidase activity|protein homodimerization activity|signal transducer activity|zinc ion binding			ovary(2)|central_nervous_system(1)	3					Bacitracin(DB00626)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	CTGTTCAGCCCGGAAATTGTTA	0.386													8	413					0	0	6.4e-05	0	0
CYP2C19	1557	broad.mit.edu	37	10	96540305	96540305	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr10:96540305G>A	uc010qnz.1	+	4	531	c.531G>A	c.(529-531)GTG>GTA	p.V177V	CYP2C19_uc009xus.1_Silent_p.V42V|CYP2C19_uc010qny.1_Silent_p.V155V	NM_000769	NP_000760	P33261	CP2CJ_HUMAN	cytochrome P450, family 2, subfamily C,	177					exogenous drug catabolic process|heterocycle metabolic process|monoterpenoid metabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|electron carrier activity|enzyme binding|heme binding|oxygen binding|steroid hydroxylase activity			ovary(4)|central_nervous_system(1)|skin(1)	6		Colorectal(252;0.09)		all cancers(201;6.02e-07)|KIRC - Kidney renal clear cell carcinoma(50;0.0672)|Kidney(138;0.0838)	Adinazolam(DB00546)|Aminophenazone(DB01424)|Amitriptyline(DB00321)|Amoxicillin(DB01060)|Arformoterol(DB01274)|Bortezomib(DB00188)|Carisoprodol(DB00395)|Chlorzoxazone(DB00356)|Cilostazol(DB01166)|Citalopram(DB00215)|Clarithromycin(DB01211)|Clobazam(DB00349)|Desipramine(DB01151)|Desloratadine(DB00967)|Diclofenac(DB00586)|Diltiazem(DB00343)|Efavirenz(DB00625)|Esomeprazole(DB00736)|Famotidine(DB00927)|Felbamate(DB00949)|Finasteride(DB01216)|Flunitrazepam(DB01544)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Fosphenytoin(DB01320)|Guanfacine(DB01018)|Imipramine(DB00458)|Indomethacin(DB00328)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Lapatinib(DB01259)|Loratadine(DB00455)|Melatonin(DB01065)|Mephenytoin(DB00532)|Methadone(DB00333)|Methylphenobarbital(DB00849)|Moclobemide(DB01171)|Modafinil(DB00745)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Nilutamide(DB00665)|Norgestrel(DB00506)|Omeprazole(DB00338)|Oxcarbazepine(DB00776)|Pantoprazole(DB00213)|Pentamidine(DB00738)|Phenobarbital(DB01174)|Phenytoin(DB00252)|Primidone(DB00794)|Progesterone(DB00396)|Proguanil(DB01131)|Promazine(DB00420)|Quinidine(DB00908)|Rabeprazole(DB01129)|Ranitidine(DB00863)|Ritonavir(DB00503)|Selegiline(DB01037)|Sertraline(DB01104)|Temazepam(DB00231)|Teniposide(DB00444)|Terfenadine(DB00342)|Thalidomide(DB01041)|Thioridazine(DB00679)|Ticlopidine(DB00208)|Tolbutamide(DB01124)|Topiramate(DB00273)|Tranylcypromine(DB00752)|Troglitazone(DB00197)|Troleandomycin(DB01361)|Voriconazole(DB00582)	CCTGCAATGTGATCTGCTCCA	0.353													26	33					0	0	0.00106085	0	0
PIK3AP1	118788	broad.mit.edu	37	10	98408470	98408470	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr10:98408470G>A	uc001kmq.2	-	7	1259	c.1131C>T	c.(1129-1131)ACC>ACT	p.T377T	PIK3AP1_uc001kmp.2_Silent_p.T199T	NM_152309	NP_689522	Q6ZUJ8	BCAP_HUMAN	phosphoinositide-3-kinase adaptor protein 1	377						cytoplasm|plasma membrane				upper_aerodigestive_tract(3)|ovary(1)|skin(1)	5		Colorectal(252;0.0442)		Epithelial(162;6.29e-08)|all cancers(201;3.18e-06)		TCTCAGCGATGGTGTTGGGGT	0.577													11	15					0	0	0.00136819	0	0
PNLIP	5406	broad.mit.edu	37	10	118327281	118327281	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr10:118327281G>A	uc001lcm.2	+	13	1412	c.1369G>A	c.(1369-1371)GAA>AAA	p.E457K		NM_000936	NP_000927	P16233	LIPP_HUMAN	pancreatic lipase precursor	457	PLAT.				lipid catabolic process|retinoid metabolic process|steroid metabolic process	extracellular region	retinyl-palmitate esterase activity|triglyceride lipase activity			ovary(1)|central_nervous_system(1)|skin(1)	3				all cancers(201;0.0131)	Bentiromide(DB00522)|Orlistat(DB01083)	CGTCAGGGAGGAAGTTCTGCT	0.438													23	33					0	0	0.000586117	0	0
BTBD16	118663	broad.mit.edu	37	10	124096113	124096114	+	Silent	DNP	CC	TT	TT			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr10:124096113_124096114CC>TT	uc001lgc.1	+	15	1619_1620	c.1368_1369CC>TT	c.(1366-1371)GCCCTG>GCTTTG	p.456_457AL>AL	BTBD16_uc001lgd.1_Silent_p.455_456AL>AL	NM_144587	NP_653188	Q32M84	BTBDG_HUMAN	BTB (POZ) domain containing 16	456_457										skin(1)	1		all_neural(114;0.107)|Lung NSC(174;0.175)|all_lung(145;0.222)|Breast(234;0.238)				GAGCAGAGGCCCTGGTTGACGG	0.545													13	15					0	0	6.4e-05	0	0
CPXM2	119587	broad.mit.edu	37	10	125516744	125516744	+	Silent	SNP	G	A	A	rs76525337	by1000genomes	TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr10:125516744G>A	uc001lhk.1	-	12	2227	c.1902C>T	c.(1900-1902)ATC>ATT	p.I634I	CPXM2_uc001lhj.2_RNA	NM_198148	NP_937791	Q8N436	CPXM2_HUMAN	carboxypeptidase X (M14 family), member 2	634					cell adhesion|proteolysis	extracellular space	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2		all_lung(145;0.174)|Colorectal(57;0.178)|Glioma(114;0.222)|all_neural(114;0.226)|Lung NSC(174;0.233)		COAD - Colon adenocarcinoma(40;0.212)|Colorectal(40;0.237)		CCATGAACACGATCAGAGATT	0.532													30	28					0	0	0.00178596	0	0
CTBP2	1488	broad.mit.edu	37	10	126681771	126681771	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr10:126681771C>T	uc009yak.2	-	9	1326	c.1039G>A	c.(1039-1041)GGT>AGT	p.G347S	CTBP2_uc009yal.2_Missense_Mutation_p.G347S|CTBP2_uc001lif.3_Missense_Mutation_p.G347S|CTBP2_uc001lih.3_Missense_Mutation_p.G347S|CTBP2_uc001lid.3_Missense_Mutation_p.G415S|CTBP2_uc001lie.3_Missense_Mutation_p.G887S	NM_001329	NP_001320	P56545	CTBP2_HUMAN	C-terminal binding protein 2 isoform 1	347					negative regulation of cell proliferation|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent|viral genome replication|white fat cell differentiation	cell junction|synapse|transcriptional repressor complex	NAD binding|oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor|protein binding				0		all_lung(145;0.0132)|Lung NSC(174;0.0193)|all_neural(114;0.116)|Colorectal(57;0.173)		Colorectal(40;0.00572)|COAD - Colon adenocarcinoma(40;0.0127)|GBM - Glioblastoma multiforme(135;0.147)		AGGGGCTCACCTGTGATGGCT	0.637													9	7					0	0	0.000274275	0	0
Unknown	0	broad.mit.edu	37	10	134626349	134626349	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr10:134626349C>T	uc010qux.1	-	47	6619	c.6619G>A	c.(6619-6621)GGA>AGA	p.G2207R		NM_017609	NP_060079			Homo sapiens cDNA, FLJ17989.																		CTCTCCATTCCATAGAAGAAG	0.597													36	38					0	0	0.00195071	0	0
KRTAP5-5	439915	broad.mit.edu	37	11	1651419	1651419	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:1651419G>A	uc001lty.2	+	1	387	c.349G>A	c.(349-351)GGG>AGG	p.G117R		NM_001001480	NP_001001480	Q701N2	KRA55_HUMAN	keratin associated protein 5-5	117	8 X 4 AA repeats of C-C-X-P.			Missing (in Ref. 1; BAD20201 and 2; CAF31639).		keratin filament				lung(1)	1		all_epithelial(84;0.00018)|Ovarian(85;0.0014)|Breast(177;0.00147)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.000614)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		GGGGTCCAAGGGGGGCTGTGG	0.706													28	36					0	0	0.00127121	0	0
KCNQ1	3784	broad.mit.edu	37	11	2608861	2608862	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:2608861_2608862GG>AA	uc001lwn.2	+	9	1298_1299	c.1190_1191GG>AA	c.(1189-1191)CGG>CAA	p.R397Q	KCNQ1_uc009ydp.1_Missense_Mutation_p.R181Q|KCNQ1_uc001lwo.2_Missense_Mutation_p.R270Q	NM_000218	NP_000209	P51787	KCNQ1_HUMAN	potassium voltage-gated channel, KQT-like	397	Cytoplasmic (Potential).				blood circulation|membrane depolarization|muscle contraction|sensory perception of sound		delayed rectifier potassium channel activity|protein binding			ovary(1)	1		all_epithelial(84;3.26e-05)|Breast(177;0.001)|Medulloblastoma(188;0.00111)|Ovarian(85;0.00158)|all_neural(188;0.00725)|all_lung(207;0.11)|Lung NSC(207;0.159)		BRCA - Breast invasive adenocarcinoma(625;0.00251)|Lung(200;0.131)	Bepridil(DB01244)|Indapamide(DB00808)	ATCTACATCCGGAAGGCCCCCC	0.639													140	276					0	0	6.4e-05	0	0
NUP98	4928	broad.mit.edu	37	11	3797179	3797179	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:3797179G>A	uc001lyh.2	-	5	719	c.428C>T	c.(427-429)ACA>ATA	p.T143I	NUP98_uc001lyi.2_Missense_Mutation_p.T143I|NUP98_uc001lyj.1_Missense_Mutation_p.T143I|NUP98_uc001lyk.1_Missense_Mutation_p.T143I|NUP98_uc010qxv.1_Missense_Mutation_p.T106I	NM_016320	NP_057404	P52948	NUP98_HUMAN	nucleoporin 98kD isoform 1	143	Gly/Thr-rich.				carbohydrate metabolic process|DNA replication|glucose transport|interspecies interaction between organisms|mitotic prometaphase|mRNA transport|nuclear pore organization|protein import into nucleus, docking|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear membrane|nucleoplasm|Nup107-160 complex	protein binding|structural constituent of nuclear pore|transporter activity			breast(4)|skin(3)|ovary(2)|central_nervous_system(1)|lung(1)|kidney(1)	12		Medulloblastoma(188;0.0025)|Breast(177;0.00328)|all_neural(188;0.0227)		BRCA - Breast invasive adenocarcinoma(625;0.0403)|LUSC - Lung squamous cell carcinoma(625;0.116)|Lung(200;0.199)		GGAGCCAGATGTGCTGCCAAA	0.393			T	HOXA9|NSD1|WHSC1L1|DDX10|TOP1|HOXD13|PMX1|HOXA13|HOXD11|HOXA11|RAP1GDS1|HOXC11	AML								71	109					0	0	0.000781405	0	0
C11orf40	143501	broad.mit.edu	37	11	4598979	4598979	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:4598979C>T	uc010qyg.1	-	1	72	c.72G>A	c.(70-72)GGG>GGA	p.G24G		NM_144663	NP_653264	Q8WZ69	CK040_HUMAN	hypothetical protein LOC143501	24										ovary(2)	2		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;4.28e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0288)|LUSC - Lung squamous cell carcinoma(625;0.192)		gttgtgggtcccctctgtcca	0													4	8					0	0	0.00024832	0	0
OR51E1	143503	broad.mit.edu	37	11	4674078	4674078	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:4674078C>T	uc001lzi.3	+	2	466	c.322C>T	c.(322-324)CAC>TAC	p.H108Y		NM_152430	NP_689643	Q8TCB6	O51E1_HUMAN	olfactory receptor, family 51, subfamily E,	107	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(3)|pancreas(1)	4		Medulloblastoma(188;0.0025)|Breast(177;0.0101)|all_neural(188;0.0227)		Epithelial(150;7.37e-14)|GBM - Glioblastoma multiforme(2;2.85e-05)|BRCA - Breast invasive adenocarcinoma(625;0.00222)|LUSC - Lung squamous cell carcinoma(625;0.19)		GTTTGCCATCCACTCCTTATC	0.512													9	39					0	0	0.000274275	0	0
OR51F2	119694	broad.mit.edu	37	11	4843236	4843236	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:4843236G>A	uc010qyn.1	+	1	621	c.621G>A	c.(619-621)AGG>AGA	p.R207R		NM_001004753	NP_001004753	Q8NH61	O51F2_HUMAN	olfactory receptor, family 51, subfamily F,	207	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.0778)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		CAGACAATAGGATCAACAGCA	0.463													18	54					0	0	0.000958276	0	0
OR52J3	119679	broad.mit.edu	37	11	5068545	5068545	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:5068545C>T	uc010qyv.1	+	1	790	c.790C>T	c.(790-792)CGA>TGA	p.R264*		NM_001001916	NP_001001916	Q8NH60	O52J3_HUMAN	olfactory receptor, family 52, subfamily J,	264	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|lung(1)|skin(1)	3		Medulloblastoma(188;0.00131)|all_neural(188;0.0189)|Breast(177;0.0204)		Epithelial(150;9.29e-10)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.19)		CCTTACTCATCGATTTGGACA	0.438													12	19					0	0	0.000978159	0	0
HBBP1	3044	broad.mit.edu	37	11	5264377	5264377	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:5264377G>A	uc001mag.2	-	2	325	c.109C>T	c.(109-111)CTG>TTG	p.L37L		NR_001589				Homo sapiens hemoglobin, beta pseudogene 1 (HBBP1), non-coding RNA.												0						TTACAGTGCAGGTCACTCAGT	0.483													3	13					0	0	6.4e-05	0	0
HBG1	3047	broad.mit.edu	37	11	5269630	5269630	+	Missense_Mutation	SNP	C	T	T	rs35849660		TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:5269630C>T	uc001mah.1	-	3	456	c.403G>A	c.(403-405)GTG>ATG	p.V135M	HBG2_uc001mai.1_Missense_Mutation_p.V135M	NM_000559	NP_000550	P69891	HBG1_HUMAN	A-gamma globin	135			V -> M (in Jiangsu).		blood coagulation	hemoglobin complex	heme binding|oxygen binding|oxygen transporter activity|protein binding				0		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.76e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		ACTGCAGTCACCATCTTCTGC	0.502													32	36					0	0	0.0024448	0	0
OR51B5	282763	broad.mit.edu	37	11	5364200	5364200	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:5364200G>A	uc001map.1	-	1	555	c.555C>T	c.(553-555)CTC>CTT	p.L185L	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Silent_p.L185L	NM_001005567	NP_001005567	Q9H339	O51B5_HUMAN	olfactory receptor, family 51, subfamily B,	185	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;3.05e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CAGCACAGGCGAGTTTAATGA	0.433													48	59					0	0	0.000781405	0	0
OR52H1	390067	broad.mit.edu	37	11	5566642	5566642	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:5566642G>A	uc010qzh.1	-	1	112	c.112C>T	c.(112-114)CCC>TCC	p.P38S	HBG2_uc001mak.1_Intron	NM_001005289	NP_001005289	Q8NGJ2	O52H1_HUMAN	olfactory receptor, family 52, subfamily H,	38	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;5.33e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		ATACAGAAGGGAATTCCAATC	0.458													11	65					0	0	0.000673444	0	0
OR52N5	390075	broad.mit.edu	37	11	5799130	5799130	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:5799130C>T	uc010qzn.1	-	1	735	c.735G>A	c.(733-735)AAG>AAA	p.K245K	TRIM5_uc001mbq.1_Intron|TRIM22_uc009yet.1_Intron	NM_001001922	NP_001001922	Q8NH56	O52N5_HUMAN	olfactory receptor, family 52, subfamily N,	245	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;3.05e-11)|LUSC - Lung squamous cell carcinoma(625;0.112)|BRCA - Breast invasive adenocarcinoma(625;0.135)|Lung(200;0.195)		TGCTGAAAGCCTTCTGCCGAG	0.463													5	20					0	0	0.000602214	0	0
OR52N1	79473	broad.mit.edu	37	11	5809545	5809545	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:5809545G>A	uc010qzo.1	-	1	502	c.502C>T	c.(502-504)CTT>TTT	p.L168F	TRIM5_uc001mbq.1_Intron|TRIM22_uc009yet.1_Intron	NM_001001913	NP_001001913	Q8NH53	O52N1_HUMAN	olfactory receptor, family 52, subfamily N,	168	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;3.05e-11)|LUSC - Lung squamous cell carcinoma(625;0.112)|BRCA - Breast invasive adenocarcinoma(625;0.135)|Lung(200;0.195)		CAGTATGGAAGGCGCTTGGTG	0.488													4	18					0	0	0.000602214	0	0
OR56A4	120793	broad.mit.edu	37	11	6023540	6023540	+	Missense_Mutation	SNP	A	C	C			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:6023540A>C	uc010qzv.1	-	1	839	c.839T>G	c.(838-840)GTG>GGG	p.V280G		NM_001005179	NP_001005179	Q8NGH8	O56A4_HUMAN	olfactory receptor, family 56, subfamily A,	228	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;7.01e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GATCCTAAGCACAACTTTCAA	0.478													12	12					0	0	0.00185496	0	0
OR56B4	196335	broad.mit.edu	37	11	6129417	6129417	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:6129417C>T	uc010qzx.1	+	1	409	c.409C>T	c.(409-411)CAG>TAG	p.Q137*		NM_001005181	NP_001005181	Q8NH76	O56B4_HUMAN	olfactory receptor, family 56, subfamily B,	137	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;1.31e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TCGCCCTCTTCAGTACCCCTC	0.488													14	62					0	0	0.00185496	0	0
OR6A2	8590	broad.mit.edu	37	11	6816561	6816561	+	Missense_Mutation	SNP	G	A	A	rs151066337		TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:6816561G>A	uc001mes.1	-	1	579	c.379C>T	c.(379-381)CGC>TGC	p.R127C		NM_003696	NP_003687	O95222	OR6A2_HUMAN	olfactory receptor, family 6, subfamily A,	127	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.R127C(1)|p.R127H(1)		ovary(3)|central_nervous_system(1)|pancreas(1)	5		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.78e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		GCCATATAGCGATCATAGGCC	0.527													5	7					0	0	0.000602214	0	0
RBMXL2	27288	broad.mit.edu	37	11	7111178	7111178	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:7111178G>A	uc001mfc.2	+	1	1014	c.827G>A	c.(826-828)AGA>AAA	p.R276K		NM_014469	NP_055284	O75526	HNRGT_HUMAN	testes-specific heterogenous nuclear	276	Arg/Gly/Pro-rich.					nucleus|ribonucleoprotein complex	nucleotide binding|RNA binding				0				Epithelial(150;5.14e-08)|BRCA - Breast invasive adenocarcinoma(625;0.189)		CATCTGAGCAGAGGCTCCCAT	0.662													6	19					0	0	0.00116845	0	0
OR10A6	390093	broad.mit.edu	37	11	7950073	7950073	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:7950073A>G	uc010rbh.1	-	1	137	c.137T>C	c.(136-138)ATA>ACA	p.I46T		NM_001004461	NP_001004461	Q8NH74	O10A6_HUMAN	olfactory receptor, family 10, subfamily A,	46	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2				Epithelial(150;1.38e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		GACGATGACTATAATAATGGC	0.468													7	28					0	0	0.00198382	0	0
NLRP10	338322	broad.mit.edu	37	11	7981841	7981841	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:7981841C>T	uc001mfv.1	-	2	1335	c.1318G>A	c.(1318-1320)GGC>AGC	p.G440S		NM_176821	NP_789791	Q86W26	NAL10_HUMAN	NLR family, pyrin domain containing 10	440	NACHT.						ATP binding			lung(4)|ovary(2)|pancreas(1)|kidney(1)|skin(1)	9				Epithelial(150;1.47e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		AGCCTGGGGCCATCTAAATTA	0.502													21	116					0	0	0.00229938	0	0
SCUBE2	57758	broad.mit.edu	37	11	9055230	9055230	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:9055230G>A	uc001mhh.1	-	16	2109	c.2029C>T	c.(2029-2031)CCA>TCA	p.P677S	SCUBE2_uc001mhi.1_Intron|SCUBE2_uc001mhj.1_Missense_Mutation_p.P551S	NM_020974	NP_066025	Q9NQ36	SCUB2_HUMAN	CEGP1 protein precursor	677						extracellular region	calcium ion binding			ovary(1)|skin(1)	2				all cancers(16;8.57e-09)|Epithelial(150;4.42e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0116)		GAATTTCCTGGTCTTGGGCAT	0.473													27	131					0	0	0.000878237	0	0
MRVI1	10335	broad.mit.edu	37	11	10626044	10626044	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:10626044G>A	uc010rcc.1	-	13	2037	c.1651C>T	c.(1651-1653)CTG>TTG	p.L551L	MRVI1_uc001miw.2_Silent_p.L542L|MRVI1_uc010rcb.1_Silent_p.L543L|MRVI1_uc009ygb.1_Silent_p.L236L|MRVI1_uc001mix.2_Silent_p.L236L|MRVI1_uc001miz.2_Silent_p.L460L|MRVI1_uc009ygc.1_Silent_p.L460L|MRVI1_uc010rcd.1_Silent_p.L345L|MRVI1_uc009ygd.1_Silent_p.L236L|MRVI1_uc010rce.1_RNA	NM_001100167	NP_001093637	Q9Y6F6	MRVI1_HUMAN	JAW1-related protein isoform c	524	Potential.|Interaction with ITPR1 (By similarity).				platelet activation	endoplasmic reticulum membrane|integral to membrane|perinuclear region of cytoplasm|platelet dense tubular network membrane|sarcoplasmic reticulum				ovary(2)|central_nervous_system(1)	3				all cancers(16;2.68e-07)|Epithelial(150;3.04e-07)|BRCA - Breast invasive adenocarcinoma(625;0.0723)		CTAGATTCCAGAGTGTAGCTG	0.463													22	79					0	0	0.00188189	0	0
ABCC8	6833	broad.mit.edu	37	11	17416776	17416776	+	Nonsense_Mutation	SNP	C	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:17416776C>A	uc001mnc.2	-	36	4480	c.4354G>T	c.(4354-4356)GAG>TAG	p.E1452*		NM_000352	NP_000343	Q09428	ABCC8_HUMAN	ATP-binding cassette, sub-family C, member 8	1452	Cytoplasmic (By similarity).|ABC transporter 2.				carbohydrate metabolic process|energy reserve metabolic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium ion transmembrane transporter activity|sulfonylurea receptor activity			ovary(1)	1				READ - Rectum adenocarcinoma(2;0.0325)|Colorectal(2;0.1)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)|Gliclazide(DB01120)|Mitiglinide(DB01252)|Nateglinide(DB00731)|Repaglinide(DB00912)	TCCAGGGCCTCCCACAGTGTG	0.587													50	81					7.47603e-22	3.53797e-21	0.000781405	1	0
MYOD1	4654	broad.mit.edu	37	11	17741473	17741473	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:17741473G>A	uc001mni.2	+	1	364	c.144G>A	c.(142-144)CCG>CCA	p.P48P		NM_002478	NP_002469	P15172	MYOD1_HUMAN	myogenic differentiation 1	48					muscle cell fate commitment|positive regulation of muscle cell differentiation|positive regulation of transcription from RNA polymerase II promoter|protein phosphorylation|skeletal muscle tissue development	nuclear chromatin|transcription factor complex	E-box binding|protein heterodimerization activity|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription coactivator activity			breast(2)|ovary(1)	3						ACCTGGACCCGCGCCTGATGC	0.672													16	25					0	0	0.00121646	0	0
MRGPRX1	259249	broad.mit.edu	37	11	18955494	18955494	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:18955494G>A	uc001mpg.2	-	1	1056	c.838C>T	c.(838-840)CAG>TAG	p.Q280*		NM_147199	NP_671732	Q96LB2	MRGX1_HUMAN	MAS-related GPR, member X1	280	Cytoplasmic (Potential).				acute-phase response	integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(2)|central_nervous_system(1)	3						TTTTGACGCTGCCTAAAGGAG	0.498													14	68					0	0	0.000308642	0	0
SLC6A5	9152	broad.mit.edu	37	11	20673992	20673992	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:20673992G>A	uc001mqd.2	+	15	2501	c.2228G>A	c.(2227-2229)AGA>AAA	p.R743K	SLC6A5_uc009yic.2_Missense_Mutation_p.R508K	NM_004211	NP_004202	Q9Y345	SC6A5_HUMAN	solute carrier family 6 (neurotransmitter	743	Cytoplasmic (Potential).				synaptic transmission	integral to membrane|plasma membrane	glycine:sodium symporter activity|neurotransmitter:sodium symporter activity			ovary(2)|breast(1)|skin(1)	4					Glycine(DB00145)	GCCCCTGGAAGATTTATTGAG	0.433													23	138					0	0	0.00106085	0	0
ANO3	63982	broad.mit.edu	37	11	26656579	26656580	+	Missense_Mutation	DNP	AA	TT	TT			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:26656579_26656580AA>TT	uc001mqt.3	+	20	2150_2151	c.2005_2006AA>TT	c.(2005-2007)AAA>TTA	p.K669L	ANO3_uc010rdr.1_Missense_Mutation_p.K653L|ANO3_uc010rds.1_Missense_Mutation_p.K508L|ANO3_uc010rdt.1_Missense_Mutation_p.K523L	NM_031418	NP_113606	Q9BYT9	ANO3_HUMAN	transmembrane protein 16C	669	Extracellular (Potential).					chloride channel complex	chloride channel activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						CCACCCAGGAAAATACAATAAA	0.45													6	35					0	0	6.4e-05	0	0
ANO3	63982	broad.mit.edu	37	11	26664814	26664814	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:26664814C>T	uc001mqt.3	+	23	2506	c.2361C>T	c.(2359-2361)ATC>ATT	p.I787I	ANO3_uc010rdr.1_Silent_p.I771I|ANO3_uc010rds.1_Silent_p.I626I|ANO3_uc010rdt.1_Silent_p.I641I	NM_031418	NP_113606	Q9BYT9	ANO3_HUMAN	transmembrane protein 16C	787	Cytoplasmic (Potential).					chloride channel complex	chloride channel activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						TCATTGAAATCAGGCTGGATG	0.418													10	64					0	0	0.000673444	0	0
ABTB2	25841	broad.mit.edu	37	11	34181501	34181501	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:34181501C>T	uc001mvl.1	-	13	2230	c.2000G>A	c.(1999-2001)GGA>GAA	p.G667E		NM_145804	NP_665803	Q8N961	ABTB2_HUMAN	ankyrin repeat and BTB (POZ) domain containing	667							DNA binding			central_nervous_system(1)|skin(1)	2		Acute lymphoblastic leukemia(5;0.0508)|all_hematologic(20;0.0691)				AAACAGCTTTCCTTCCACCAG	0.502													24	42					0	0	0.00106085	0	0
RAG2	5897	broad.mit.edu	37	11	36614842	36614842	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:36614842C>T	uc001mwv.3	-	2	1065	c.877G>A	c.(877-879)GAG>AAG	p.E293K	C11orf74_uc010rfd.1_5'Flank|C11orf74_uc001mww.1_5'Flank|C11orf74_uc001mwx.1_5'Flank|C11orf74_uc001mwy.1_5'Flank|C11orf74_uc001mwz.1_5'Flank|C11orf74_uc010rfe.1_5'Flank	NM_000536	NP_000527	P55895	RAG2_HUMAN	recombination activating gene 2	293					chromatin modification|pre-B cell allelic exclusion|somatic diversification of immunoglobulins|T cell differentiation in thymus|V(D)J recombination	nucleus	chromatin binding|DNA binding|endonuclease activity|methylated histone residue binding|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|phosphatidylinositol-3,5-bisphosphate binding|phosphatidylinositol-4,5-bisphosphate binding|zinc ion binding			skin(3)|ovary(1)|pancreas(1)	5	all_lung(20;0.226)	all_hematologic(20;0.00756)				TTGTTGTCCTCTAAAGAGATG	0.398									Familial_Hemophagocytic_Lymphohistiocytosis				42	70					0	0	0.00222228	0	0
HARBI1	283254	broad.mit.edu	37	11	46637731	46637731	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:46637731G>A	uc001ncy.2	-	2	305	c.57C>T	c.(55-57)CAC>CAT	p.H19H	KIAA0652_uc009yld.2_5'Flank|KIAA0652_uc001nda.2_5'Flank|KIAA0652_uc001ndb.2_5'Flank|KIAA0652_uc001ncz.2_5'Flank|KIAA0652_uc001ndc.2_5'Flank|KIAA0652_uc010rgv.1_5'Flank	NM_173811	NP_776172	Q96MB7	HARB1_HUMAN	harbinger transposase derived 1	19						cytoplasm|nucleus	metal ion binding|nuclease activity				0						CCAATGTCCGGTGACCACGGC	0.443													31	61					0	0	0.000814825	0	0
SPI1	6688	broad.mit.edu	37	11	47376925	47376925	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:47376925C>T	uc001nfc.1	-	5	889	c.666G>A	c.(664-666)AAG>AAA	p.K222K	MYBPC3_uc001nfa.3_5'Flank|SPI1_uc001nfb.1_Silent_p.K223K|SLC39A13_uc001nfd.2_5'Flank	NM_003120	NP_003111	P17947	SPI1_HUMAN	hematopoietic transcription factor PU.1 isoform	222	ETS.				negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|regulation of erythrocyte differentiation	nucleus	protein binding|RNA binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			lung(1)|central_nervous_system(1)	2				Lung(87;0.0967)		GGTAGGTCATCTTCTTGCGGT	0.607													11	31					0	0	0.000673444	0	0
OR4C13	283092	broad.mit.edu	37	11	49974506	49974506	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:49974506G>A	uc010rhz.1	+	1	532	c.532G>A	c.(532-534)GAT>AAT	p.D178N		NM_001001955	NP_001001955	Q8NGP0	OR4CD_HUMAN	olfactory receptor, family 4, subfamily C,	178	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|ovary(1)	4						CTTTATGTGTGATCTCTACAC	0.423													25	58					0	0	0.00127121	0	0
OR4C13	283092	broad.mit.edu	37	11	49974618	49974618	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:49974618C>T	uc010rhz.1	+	1	644	c.644C>T	c.(643-645)TCC>TTC	p.S215F		NM_001001955	NP_001001955	Q8NGP0	OR4CD_HUMAN	olfactory receptor, family 4, subfamily C,	215	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|ovary(1)	4						CTCCTGGTCTCCTGCGTGGTC	0.488													15	53					0	0	0.00244969	0	0
OR4A16	81327	broad.mit.edu	37	11	55111247	55111247	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:55111247T>C	uc010rie.1	+	1	571	c.571T>C	c.(571-573)TAC>CAC	p.Y191H		NM_001005274	NP_001005274	Q8NH70	O4A16_HUMAN	olfactory receptor, family 4, subfamily A,	191	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(2)|pancreas(1)	3						CCTTGACACCTACTTTATAGG	0.418													7	21					0	0	0.000157383	0	0
OR4C15	81309	broad.mit.edu	37	11	55322792	55322792	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:55322792C>T	uc010rig.1	+	1	1010	c.1010C>T	c.(1009-1011)CCT>CTT	p.P337L		NM_001001920	NP_001001920	Q8NGM1	OR4CF_HUMAN	olfactory receptor, family 4, subfamily C,	283	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						TTGCTCAATCCTTTGATTTAC	0.358										HNSCC(20;0.049)			8	67					0	0	0.000274275	0	0
OR5D13	390142	broad.mit.edu	37	11	55541254	55541254	+	Missense_Mutation	SNP	C	T	T	rs150275540	byFrequency	TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:55541254C>T	uc010ril.1	+	1	341	c.341C>T	c.(340-342)ACT>ATT	p.T114I		NM_001001967	NP_001001967	Q8NGL4	OR5DD_HUMAN	olfactory receptor, family 5, subfamily D,	114	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3		all_epithelial(135;0.196)				GTGACAGAAACTTTCATGTTA	0.418													16	48					0	0	0.000422831	0	0
SPRYD5	84767	broad.mit.edu	37	11	55655577	55655577	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:55655577G>A	uc010rip.1	+	4	669	c.577G>A	c.(577-579)GAA>AAA	p.E193K	SPRYD5_uc010riq.1_Missense_Mutation_p.E50K	NM_032681	NP_116070	Q9BSJ1	SPRY5_HUMAN	SPRY domain containing 5	193						intracellular	zinc ion binding				0		all_epithelial(135;0.226)				TCTCCATGAAGAAGAGCAACA	0.413													3	8					0	0	6.4e-05	0	0
OR5F1	338674	broad.mit.edu	37	11	55761558	55761558	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:55761558G>A	uc010riv.1	-	1	544	c.544C>T	c.(544-546)CCC>TCC	p.P182S		NM_003697	NP_003688	O95221	OR5F1_HUMAN	olfactory receptor, family 5, subfamily F,	182	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)	2	Esophageal squamous(21;0.00448)					AAAAGTGGGGGACTGTCACAG	0.448													5	35					0	0	0.000602214	0	0
OR5T1	390155	broad.mit.edu	37	11	56043953	56043953	+	Missense_Mutation	SNP	C	T	T	rs149057096	byFrequency	TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:56043953C>T	uc001nio.1	+	1	839	c.839C>T	c.(838-840)TCG>TTG	p.S280L		NM_001004745	NP_001004745	Q8NG75	OR5T1_HUMAN	olfactory receptor, family 5, subfamily T,	280	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)	3	Esophageal squamous(21;0.00448)					AGCTACACTTCGGACAATGAC	0.408													27	51					0	0	0.000878237	0	0
OR5M1	390168	broad.mit.edu	37	11	56380844	56380844	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:56380844C>T	uc001nja.1	-	1	135	c.135G>A	c.(133-135)ATG>ATA	p.M45I		NM_001004740	NP_001004740	Q8NGP8	OR5M1_HUMAN	olfactory receptor, family 5, subfamily M,	45	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1						TCAGCAGGATCATGCACAGGT	0.478													10	12					0	0	0.000673444	0	0
SLC43A1	8501	broad.mit.edu	37	11	57252616	57252616	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:57252616C>T	uc001nkk.2	-	15	1751	c.1633G>A	c.(1633-1635)GGG>AGG	p.G545R	SLC43A1_uc001nkl.2_Missense_Mutation_p.G545R	NM_003627	NP_003618	O75387	LAT3_HUMAN	solute carrier family 43, member 1	545					cellular nitrogen compound metabolic process|ion transport	integral to plasma membrane	neutral amino acid transmembrane transporter activity				0						GGGCCCATCCCATTGGCGGCG	0.572													12	35					0	0	0.00244969	0	0
OR5B17	219965	broad.mit.edu	37	11	58125899	58125899	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:58125899G>A	uc010rke.1	-	1	644	c.644C>T	c.(643-645)TCC>TTC	p.S215F		NM_001005489	NP_001005489	Q8NGF7	OR5BH_HUMAN	olfactory receptor, family 5, subfamily B,	215	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				GAACAGATAGGAAATCAAGGT	0.373													5	9					0	0	0.00116845	0	0
GLYAT	10249	broad.mit.edu	37	11	58477282	58477282	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:58477282G>A	uc001nnb.2	-	6	1003	c.848C>T	c.(847-849)CCC>CTC	p.P283L		NM_201648	NP_964011	Q6IB77	GLYAT_HUMAN	glycine-N-acyltransferase isoform a	283					acyl-CoA metabolic process|response to toxin|xenobiotic metabolic process	mitochondrial matrix	glycine N-acyltransferase activity|glycine N-benzoyltransferase activity				0		Breast(21;0.0044)|all_epithelial(135;0.0157)			Glycine(DB00145)	TCTGGGAATGGGAACATGTTG	0.458													11	15					0	0	0.000978159	0	0
GLYATL2	219970	broad.mit.edu	37	11	58607023	58607023	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:58607023G>A	uc001nnd.3	-	2	194	c.63C>T	c.(61-63)ATC>ATT	p.I21I	GLYATL2_uc009ymq.2_Silent_p.I21I	NM_145016	NP_659453	Q8WU03	GLYL2_HUMAN	glycine-N-acyltransferase-like 2	21						mitochondrion	glycine N-acyltransferase activity			ovary(1)|skin(1)	2		Breast(21;0.0044)|all_epithelial(135;0.0216)			Glycine(DB00145)	TGGATTCAGGGATGCTCTTTT	0.428													13	19					0	0	0.00244969	0	0
TMEM132A	54972	broad.mit.edu	37	11	60699183	60699183	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:60699183C>T	uc001nqj.2	+	6	1232	c.1039C>T	c.(1039-1041)CTA>TTA	p.L347L	TMEM132A_uc001nqi.2_Silent_p.L348L|TMEM132A_uc001nqk.2_Silent_p.L360L|TMEM132A_uc001nql.1_Silent_p.L360L|TMEM132A_uc001nqm.2_5'Flank	NM_178031	NP_821174	Q24JP5	T132A_HUMAN	transmembrane protein 132A isoform b	347	Extracellular (Potential).					endoplasmic reticulum membrane|Golgi membrane|integral to membrane				skin(1)	1						GTCTGAGTTCCTATGGGTGGA	0.582													28	90					0	0	0.00178596	0	0
TMEM216	51259	broad.mit.edu	37	11	61161357	61161357	+	Silent	SNP	T	G	G			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:61161357T>G	uc010rlj.1	+	3	410	c.117T>G	c.(115-117)GGT>GGG	p.G39G	TMEM216_uc001nrn.1_5'UTR	NM_016499	NP_057583	Q9P0N5	TM216_HUMAN	transmembrane protein 216	39						integral to membrane					0						TATTGGCAGGTGTCCTGCTAC	0.438													13	38					0	0	0.000720815	0	0
DAGLA	747	broad.mit.edu	37	11	61505224	61505224	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:61505224C>T	uc001nsa.2	+	15	1691	c.1580C>T	c.(1579-1581)CCC>CTC	p.P527L		NM_006133	NP_006124	Q9Y4D2	DGLA_HUMAN	neural stem cell-derived dendrite regulator	527	Cytoplasmic (Potential).				cell death|lipid catabolic process|platelet activation	integral to membrane|plasma membrane	acylglycerol lipase activity|metal ion binding|triglyceride lipase activity			ovary(2)|central_nervous_system(1)	3				READ - Rectum adenocarcinoma(4;0.219)		GACCTCGTCCCCAGGTGAGTC	0.617													13	36					0	0	0.000308642	0	0
AHNAK	79026	broad.mit.edu	37	11	62288329	62288329	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:62288329G>A	uc001ntl.2	-	5	13860	c.13560C>T	c.(13558-13560)TCC>TCT	p.S4520S	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	4520					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				TGTCACTCATGGAGATTTGTG	0.428													11	89					0	0	0.00136819	0	0
MTA2	9219	broad.mit.edu	37	11	62362538	62362538	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:62362538G>A	uc001ntq.1	-	15	1869	c.1488C>T	c.(1486-1488)TCC>TCT	p.S496S	MTA2_uc010rlx.1_Silent_p.S323S	NM_004739	NP_004730	O94776	MTA2_HUMAN	metastasis-associated protein 2	496					chromatin assembly or disassembly	NuRD complex	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						GAAGTCGAATGGAGCCTGGAG	0.498													24	98					0	0	0.00047179	0	0
EML3	256364	broad.mit.edu	37	11	62376896	62376896	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:62376896G>A	uc001ntu.1	-	6	996	c.688C>T	c.(688-690)CCG>TCG	p.P230S	EML3_uc001ntr.1_Missense_Mutation_p.P202S|EML3_uc001nts.1_Missense_Mutation_p.P202S|EML3_uc001ntt.1_Missense_Mutation_p.P114S|EML3_uc010rly.1_Missense_Mutation_p.P230S|EML3_uc009yny.1_Missense_Mutation_p.P13S	NM_153265	NP_694997	Q32P44	EMAL3_HUMAN	echinoderm microtubule associated protein like	230						cytoplasm|microtubule	protein binding			ovary(1)	1						ATGCCAGACGGGATGTACATG	0.577													42	75					0	0	0.000781405	0	0
SLC22A25	387601	broad.mit.edu	37	11	62931309	62931309	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:62931309C>T	uc001nwr.1	-	9	1631	c.1631G>A	c.(1630-1632)AGC>AAC	p.S544N	SLC22A10_uc010rmo.1_Intron|SLC22A25_uc009yoq.1_RNA|SLC22A25_uc001nws.1_RNA	NM_199352	NP_955384	Q6T423	S22AP_HUMAN	putative UST1-like organic anion transporter	544	Cytoplasmic (Potential).				transmembrane transport	integral to membrane				ovary(3)|skin(1)	4						TAGCACAGAGCTCCTCTGAGG	0.507													7	50					0	0	0.000157383	0	0
C11orf84	144097	broad.mit.edu	37	11	63586056	63586056	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:63586056C>T	uc001nxt.2	+	4	901	c.665C>T	c.(664-666)CCC>CTC	p.P222L		NM_138471	NP_612480	Q9BUA3	CK084_HUMAN	hypothetical protein LOC144097	222	Pro-rich.										0						TGGAAGGAACCCCCAGGGGAA	0.562													30	46					0	0	0.00209593	0	0
FERMT3	83706	broad.mit.edu	37	11	63978206	63978207	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:63978206_63978207CC>TT	uc001nyl.2	+	3	433_434	c.284_285CC>TT	c.(283-285)CCC>CTT	p.P95L	FERMT3_uc001nym.2_Missense_Mutation_p.P95L	NM_178443	NP_848537	Q86UX7	URP2_HUMAN	fermitin family homolog 3 long form	95					integrin activation|leukocyte cell-cell adhesion|platelet aggregation|regulation of cell-cell adhesion mediated by integrin	cell junction|cell projection|podosome	integrin binding			ovary(1)	1						TTCTTTGGGCCCCAGCACCGGC	0.649													57	110					0	0	6.4e-05	0	0
NRXN2	9379	broad.mit.edu	37	11	64418795	64418795	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:64418795G>A	uc001oar.2	-	15	3289	c.2850C>T	c.(2848-2850)GCC>GCT	p.A950A	NRXN2_uc001oas.2_Silent_p.A910A|NRXN2_uc001oaq.2_Silent_p.A617A	NM_015080	NP_055895	P58401	NRX2B_HUMAN	neurexin 2 isoform alpha-1 precursor	Error:Variant_position_missing_in_P58401_after_alignment					cell adhesion	integral to membrane				upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)|ovary(2)|kidney(1)|pancreas(1)	10						GCCCATCAGGGGCCGTGGTCT	0.577											OREG0021057	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	19	26					0	0	0.000958276	0	0
TIGD3	220359	broad.mit.edu	37	11	65123330	65123330	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:65123330G>A	uc001odo.3	+	2	214	c.51G>A	c.(49-51)AAG>AAA	p.K17K		NM_145719	NP_663771	Q6B0B8	TIGD3_HUMAN	tigger transposable element derived 3	17	HTH psq-type.				regulation of transcription, DNA-dependent	chromosome, centromeric region|nucleus	DNA binding				0						TGGCCGAGAAGATCCAGGTGC	0.612													29	53					0	0	0.000878237	0	0
MAP3K11	4296	broad.mit.edu	37	11	65375744	65375744	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:65375744G>A	uc001oew.2	-	2	1408	c.915C>T	c.(913-915)GTC>GTT	p.V305V	MAP3K11_uc001oev.2_5'Flank|MAP3K11_uc010rol.1_Silent_p.V48V|MAP3K11_uc001oex.1_5'UTR	NM_002419	NP_002410	Q16584	M3K11_HUMAN	mitogen-activated protein kinase kinase kinase	305	Protein kinase.				activation of JUN kinase activity|cell proliferation|G1 phase of mitotic cell cycle|microtubule-based process|positive regulation of JNK cascade|protein autophosphorylation	centrosome|microtubule	ATP binding|JUN kinase kinase kinase activity|mitogen-activated protein kinase kinase kinase binding|protein homodimerization activity			breast(3)|lung(1)|central_nervous_system(1)|skin(1)	6						CGCACCTCCAGACGTCACTGC	0.627													18	25					0	0	0.00121646	0	0
PCNXL3	399909	broad.mit.edu	37	11	65386245	65386245	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:65386245C>T	uc001oey.2	+	6	1412	c.1412C>T	c.(1411-1413)CCC>CTC	p.P471L		NM_032223	NP_115599	Q9H6A9	PCX3_HUMAN	pecanex-like 3	471						integral to membrane					0						CGGAGGGCCCCCCATGGGGCT	0.662													8	11					0	0	0.000442599	0	0
EFEMP2	30008	broad.mit.edu	37	11	65635849	65635849	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:65635849G>A	uc001ofy.3	-	9	1085	c.891C>T	c.(889-891)GCC>GCT	p.A297A	EFEMP2_uc001ofz.2_RNA|EFEMP2_uc001oga.2_Silent_p.A297A	NM_016938	NP_058634	O95967	FBLN4_HUMAN	EGF-containing fibulin-like extracellular matrix	297	EGF-like 6; calcium-binding (Potential).				blood coagulation	basement membrane|membrane	calcium ion binding|extracellular matrix structural constituent|protein binding|transmembrane receptor activity			ovary(1)	1				READ - Rectum adenocarcinoma(159;0.169)		CACAGGTTTGGGCCTCGGAGC	0.612													15	17					0	0	0.00244969	0	0
SYT12	91683	broad.mit.edu	37	11	66807362	66807362	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:66807362C>T	uc009yrl.2	+	4	539	c.309C>T	c.(307-309)ACC>ACT	p.T103T	SYT12_uc001oju.2_Silent_p.T103T	NM_177963	NP_808878	Q8IV01	SYT12_HUMAN	synaptotagmin XII	103	Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane				ovary(1)	1						TTGAGGACACCTTTGAGAGCA	0.647													20	87					0	0	0.00188189	0	0
TBC1D10C	374403	broad.mit.edu	37	11	67172875	67172875	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:67172875G>A	uc001ola.2	+	4	287	c.258G>A	c.(256-258)AAG>AAA	p.K86K	PPP1CA_uc001okx.1_Intron|TBC1D10C_uc001okz.2_Silent_p.K86K|TBC1D10C_uc001olb.2_RNA	NM_198517	NP_940919	Q8IV04	TB10C_HUMAN	TBC1 domain family, member 10C	86						intracellular	Rab GTPase activator activity				0			BRCA - Breast invasive adenocarcinoma(15;2.26e-06)			CACAGGTAAAGATGCAGTGCC	0.647													6	26					0	0	0.000157383	0	0
PITPNM1	9600	broad.mit.edu	37	11	67267631	67267631	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:67267631G>A	uc001olx.2	-	5	1091	c.902C>T	c.(901-903)CCC>CTC	p.P301L	PITPNM1_uc001olw.2_5'Flank|PITPNM1_uc001oly.2_Missense_Mutation_p.P301L|PITPNM1_uc001olz.2_Missense_Mutation_p.P301L	NM_004910	NP_004901	O00562	PITM1_HUMAN	phosphatidylinositol transfer protein,	301					brain development|lipid metabolic process|phototransduction|protein transport	cleavage furrow|endoplasmic reticulum membrane|Golgi cisterna membrane|lipid particle|membrane fraction|midbody	metal ion binding|phosphatidylinositol transporter activity			lung(2)|central_nervous_system(1)	3						GCTGGCATCGGGGGAGGCATC	0.692													6	23					0	0	0.000274275	0	0
MTL5	9633	broad.mit.edu	37	11	68478367	68478367	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:68478367C>T	uc001ooc.2	-	9	1449	c.1309G>A	c.(1309-1311)GGA>AGA	p.G437R		NM_004923	NP_004914	Q9Y4I5	MTL5_HUMAN	metallothionein-like 5, testis-specific isoform	437					cell differentiation|cellular metal ion homeostasis|multicellular organismal development|response to metal ion|spermatogenesis	cytoplasm|nucleus|soluble fraction	metal ion binding			ovary(2)|breast(1)	3	Esophageal squamous(3;4.37e-12)		LUAD - Lung adenocarcinoma(13;0.0676)|STAD - Stomach adenocarcinoma(18;0.185)			CTTGGAAGTCCTGAAAATTTC	0.423													23	33					0	0	0.000586117	0	0
CPT1A	1374	broad.mit.edu	37	11	68542821	68542821	+	Missense_Mutation	SNP	G	A	A	rs146533704		TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:68542821G>A	uc001oog.3	-	13	1708	c.1538C>T	c.(1537-1539)CCG>CTG	p.P513L	CPT1A_uc001oof.3_Missense_Mutation_p.P513L|CPT1A_uc009ysj.2_Intron	NM_001876	NP_001867	P50416	CPT1A_HUMAN	carnitine palmitoyltransferase 1A liver isoform	513	Cytoplasmic (Potential).				carnitine shuttle|fatty acid beta-oxidation	integral to membrane|mitochondrial outer membrane	carnitine O-palmitoyltransferase activity			skin(2)	2	Esophageal squamous(3;3.28e-14)		LUAD - Lung adenocarcinoma(13;0.0676)|STAD - Stomach adenocarcinoma(18;0.142)		L-Carnitine(DB00583)|Perhexiline(DB01074)	GGTGGGGTACGGAATGTTCGG	0.498													16	101					0	0	0.000422831	0	0
IGHMBP2	3508	broad.mit.edu	37	11	68702856	68702856	+	Silent	SNP	C	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:68702856C>A	uc001ook.1	+	12	1824	c.1722C>A	c.(1720-1722)GCC>GCA	p.A574A	IGHMBP2_uc001ool.1_Silent_p.A198A|IGHMBP2_uc001oom.1_Silent_p.A152A	NM_002180	NP_002171	P38935	SMBP2_HUMAN	immunoglobulin mu binding protein 2	574					cell death|DNA recombination|DNA repair|DNA replication|protein homooligomerization|transcription, DNA-dependent|translation	axon|growth cone|nucleus|ribonucleoprotein complex	ATP binding|ATP-dependent 5'-3' DNA helicase activity|ATP-dependent 5'-3' RNA helicase activity|ribosome binding|single-stranded DNA binding|transcription factor binding|tRNA binding|zinc ion binding				0			STAD - Stomach adenocarcinoma(18;0.0208)|LUAD - Lung adenocarcinoma(13;0.0713)			AGAAGGAGGCCGTGATACTGT	0.532													20	43					1.22574e-08	5.75627e-08	0.00229938	1	0
KRTAP5-7	440050	broad.mit.edu	37	11	71238539	71238539	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:71238539G>A	uc001oqq.1	+	1	227	c.193G>A	c.(193-195)GGA>AGA	p.G65R		NM_001012503	NP_001012521	Q6L8G8	KRA57_HUMAN	keratin associated protein 5-7	65	7 X 4 AA repeats of C-C-X-P.					keratin filament					0						GGGCTCCAAGGGAGGCTGTGG	0.587													74	132					0	0	0.000781405	0	0
ARAP1	116985	broad.mit.edu	37	11	72409131	72409131	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:72409131G>A	uc001osu.2	-	19	2751	c.2562C>T	c.(2560-2562)GCC>GCT	p.A854A	ARAP1_uc001osv.2_Silent_p.A854A|ARAP1_uc001osr.2_Silent_p.A614A|ARAP1_uc001oss.2_Silent_p.A609A|ARAP1_uc009yth.2_Silent_p.A548A|ARAP1_uc010rre.1_Silent_p.A609A|ARAP1_uc001osw.1_Silent_p.A142A	NM_001040118	NP_001035207	Q96P48	ARAP1_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	854					actin filament reorganization involved in cell cycle|negative regulation of stress fiber assembly|positive regulation of Cdc42 GTPase activity|positive regulation of filopodium assembly|regulation of ARF GTPase activity|regulation of cell shape|regulation of cellular component movement|small GTPase mediated signal transduction	cytosol|Golgi cisterna membrane|plasma membrane	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|protein binding|Rho GTPase activator activity|zinc ion binding			skin(1)	1						GCAGATCCTCGGCTAGGGGAG	0.657													78	109					0	0	0.000781405	0	0
ARHGEF17	9828	broad.mit.edu	37	11	73068123	73068123	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:73068123C>T	uc001otu.2	+	8	3966	c.3945C>T	c.(3943-3945)ATC>ATT	p.I1315I		NM_014786	NP_055601	Q96PE2	ARHGH_HUMAN	Rho guanine nucleotide exchange factor (GEF) 17	1315					actin cytoskeleton organization|apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity				0						CGGACCTCATCGTCTGCACCA	0.617													9	24					0	0	0.000978159	0	0
ARHGEF17	9828	broad.mit.edu	37	11	73073668	73073668	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:73073668C>A	uc001otu.2	+	14	4906	c.4885C>A	c.(4885-4887)CGC>AGC	p.R1629S		NM_014786	NP_055601	Q96PE2	ARHGH_HUMAN	Rho guanine nucleotide exchange factor (GEF) 17	1629					actin cytoskeleton organization|apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity				0						GGGTGACCCCCGCCCAGAGCT	0.697													11	30					4.68919e-08	2.20025e-07	0.000673444	1	0
P4HA3	283208	broad.mit.edu	37	11	73979287	73979287	+	Splice_Site	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:73979287C>T	uc001ouz.2	-	12	1511	c.1468_splice	c.e12-1	p.N490_splice	P4HA3_uc001ouy.3_Splice_Site|P4HA3_uc010rrj.1_Intron	NM_182904	NP_878907	Q7Z4N8	P4HA3_HUMAN	prolyl 4-hydroxylase, alpha III subunit							endoplasmic reticulum lumen	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 4-dioxygenase activity			skin(1)	1	Breast(11;2.31e-05)					GTGCTGCATTCTGAAACAAGA	0.547													34	33					0	0	0.00209593	0	0
C11orf30	56946	broad.mit.edu	37	11	76234235	76234235	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:76234235C>T	uc001oxl.2	+	12	1864	c.1721C>T	c.(1720-1722)TCC>TTC	p.S574F	C11orf30_uc001oxm.2_Missense_Mutation_p.S490F|C11orf30_uc010rsb.1_Missense_Mutation_p.S589F|C11orf30_uc010rsc.1_Missense_Mutation_p.S589F|C11orf30_uc001oxn.2_Missense_Mutation_p.S575F|C11orf30_uc010rsd.1_Missense_Mutation_p.S588F	NM_020193	NP_064578	Q7Z589	EMSY_HUMAN	EMSY protein	574	Thr-rich.				chromatin modification|DNA repair|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				ovary(5)|skin(1)	6						CCAATGACTTCCAAGCCCAAC	0.428													12	45					0	0	0.00185496	0	0
ODZ4	26011	broad.mit.edu	37	11	78380301	78380301	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:78380301G>A	uc001ozl.3	-	32	7552	c.7089C>T	c.(7087-7089)ATC>ATT	p.I2363I	ODZ4_uc001ozk.3_Silent_p.I588I|ODZ4_uc009yvb.1_Silent_p.I947I	NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	2363	Extracellular (Potential).|YD 23.				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						GAGGGGTCCCGATGTTGTCAC	0.488													27	50					0	0	0.000720815	0	0
FAT3	120114	broad.mit.edu	37	11	92086160	92086160	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:92086160G>A	uc001pdj.3	+	1	899	c.882G>A	c.(880-882)GCG>GCA	p.A294A		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	294	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				ATGATGGAGCGAATGGAGAGA	0.438										TCGA Ovarian(4;0.039)			34	185					0	0	0.000692331	0	0
CWF19L2	143884	broad.mit.edu	37	11	107197668	107197668	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:107197668G>A	uc010rvp.1	-	18	2683	c.2653C>T	c.(2653-2655)CCA>TCA	p.P885S	CWF19L2_uc001pjh.3_RNA|CWF19L2_uc009yxo.2_RNA	NM_152434	NP_689647	Q2TBE0	C19L2_HUMAN	CWF19-like 2, cell cycle control	885							catalytic activity				0		Melanoma(852;1.75e-05)|all_epithelial(67;6.27e-05)|Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0017)|Breast(348;0.0258)		Epithelial(105;7.18e-06)|BRCA - Breast invasive adenocarcinoma(274;1.65e-05)|all cancers(92;1.76e-05)		AAGTCATATGGTTTCCACCAC	0.388													8	26					0	0	0.000157383	0	0
NCAM1	4684	broad.mit.edu	37	11	113103477	113103477	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:113103477A>G	uc009yyq.1	+	13	1881	c.1187A>G	c.(1186-1188)AAC>AGC	p.N396S		NM_001076682	NP_001070150	P13591	NCAM1_HUMAN	neural cell adhesion molecule 1 isoform 3	488	Ig-like C2-type 5.|Extracellular (Potential).				axon guidance|interferon-gamma-mediated signaling pathway	anchored to membrane|extracellular region|Golgi membrane|integral to membrane				ovary(1)	1		all_cancers(61;5.82e-19)|all_epithelial(67;6.87e-12)|Melanoma(852;1.99e-05)|all_hematologic(158;3.66e-05)|Acute lymphoblastic leukemia(157;0.00119)|Breast(348;0.0109)|all_neural(223;0.0299)|Medulloblastoma(222;0.0458)|Renal(330;0.198)|Prostate(24;0.207)		BRCA - Breast invasive adenocarcinoma(274;1.78e-05)|Epithelial(105;0.000114)|all cancers(92;0.000467)|OV - Ovarian serous cystadenocarcinoma(223;0.212)		GGGAACTACAACTGTACTGCA	0.488													10	57					0	0	0.000978159	0	0
ZBTB16	7704	broad.mit.edu	37	11	113934493	113934493	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:113934493C>T	uc001pop.2	+	2	735	c.471C>T	c.(469-471)TTC>TTT	p.F157F	ZBTB16_uc001poo.1_Silent_p.F157F|ZBTB16_uc001poq.2_Silent_p.F157F	NM_006006	NP_005997	Q05516	ZBT16_HUMAN	promyelocytic leukemia zinc finger protein	157					apoptosis|central nervous system development|mesonephros development|myeloid cell differentiation|negative regulation of myeloid cell differentiation|negative regulation of transcription, DNA-dependent	nuclear speck|PML body|transcriptional repressor complex	protein homodimerization activity|zinc ion binding			central_nervous_system(1)|skin(1)	2		all_cancers(61;3.79e-18)|all_epithelial(67;2.32e-10)|all_hematologic(158;2.96e-05)|Melanoma(852;0.000362)|Acute lymphoblastic leukemia(157;0.00108)|Breast(348;0.0104)|all_neural(223;0.0294)|Prostate(24;0.0318)|Medulloblastoma(222;0.0438)		BRCA - Breast invasive adenocarcinoma(274;6.75e-06)|Epithelial(105;0.000181)|all cancers(92;0.0018)		AGAACATCTTCATCTCGAAGC	0.602													22	37					0	0	0.00229938	0	0
ZBTB16	7704	broad.mit.edu	37	11	114118013	114118013	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:114118013C>T	uc001pop.2	+	6	1982	c.1718C>T	c.(1717-1719)CCC>CTC	p.P573L	ZBTB16_uc001poq.2_Missense_Mutation_p.P573L	NM_006006	NP_005997	Q05516	ZBT16_HUMAN	promyelocytic leukemia zinc finger protein	573					apoptosis|central nervous system development|mesonephros development|myeloid cell differentiation|negative regulation of myeloid cell differentiation|negative regulation of transcription, DNA-dependent	nuclear speck|PML body|transcriptional repressor complex	protein homodimerization activity|zinc ion binding			central_nervous_system(1)|skin(1)	2		all_cancers(61;3.79e-18)|all_epithelial(67;2.32e-10)|all_hematologic(158;2.96e-05)|Melanoma(852;0.000362)|Acute lymphoblastic leukemia(157;0.00108)|Breast(348;0.0104)|all_neural(223;0.0294)|Prostate(24;0.0318)|Medulloblastoma(222;0.0438)		BRCA - Breast invasive adenocarcinoma(274;6.75e-06)|Epithelial(105;0.000181)|all cancers(92;0.0018)		GGTGAGAAACCCTACGAGTGC	0.582													6	31					0	0	0.00116845	0	0
DSCAML1	57453	broad.mit.edu	37	11	117321317	117321317	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:117321317C>T	uc001prh.1	-	20	3838	c.3836G>A	c.(3835-3837)GGG>GAG	p.G1279E		NM_020693	NP_065744	Q8TD84	DSCL1_HUMAN	Down syndrome cell adhesion molecule like 1	1219	Extracellular (Potential).|Fibronectin type-III 4.				axonogenesis|brain development|cell fate determination|dorsal/ventral pattern formation|embryonic skeletal system morphogenesis|homophilic cell adhesion	cell surface|integral to membrane|plasma membrane	protein homodimerization activity			ovary(3)|large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)	8	all_hematologic(175;0.0487)	Breast(348;0.0424)|Medulloblastoma(222;0.0523)|all_hematologic(192;0.232)		BRCA - Breast invasive adenocarcinoma(274;9.12e-06)|Epithelial(105;0.00172)		GCGGATCACCCCGTTGGGCTT	0.567													17	46					0	0	0.00121646	0	0
NLRX1	79671	broad.mit.edu	37	11	119054038	119054038	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:119054038C>T	uc001pvu.2	+	10	3033	c.2818C>T	c.(2818-2820)CTG>TTG	p.L940L	NLRX1_uc001pvv.2_Intron|NLRX1_uc001pvw.2_Silent_p.L940L|NLRX1_uc001pvx.2_Silent_p.L940L|PDZD3_uc001pvy.2_5'Flank|PDZD3_uc001pvz.2_5'Flank|PDZD3_uc010rzd.1_5'Flank|PDZD3_uc001pwa.2_5'Flank|PDZD3_uc001pwb.2_5'Flank	NM_024618	NP_078894	Q86UT6	NLRX1_HUMAN	NLR family member X1 isoform 1	940	Required for the repression of MAVS- induced interferon signaling.				innate immune response|interspecies interaction between organisms|negative regulation of type I interferon production	mitochondrial outer membrane	ATP binding			ovary(1)|skin(1)	2	all_hematologic(175;0.0977)	Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.7e-05)		ACTGCGGGATCTGGAAGATAG	0.617													13	54					0	0	0.00136819	0	0
SORL1	6653	broad.mit.edu	37	11	121391521	121391521	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:121391521C>T	uc001pxx.2	+	9	1447	c.1367C>T	c.(1366-1368)CCA>CTA	p.P456L		NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class	456	Extracellular (Potential).				cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		CTTCAGGCTCCAGCCTTCACG	0.418													15	30					0	0	0.00074312	0	0
C11orf63	79864	broad.mit.edu	37	11	122775005	122775005	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:122775005C>T	uc001pym.2	+	3	1014	c.717C>T	c.(715-717)TTC>TTT	p.F239F	C11orf63_uc001pyl.1_Silent_p.F239F	NM_024806	NP_079082	Q6NUN7	CK063_HUMAN	hypothetical protein LOC79864 isoform 1	239										ovary(3)	3		Breast(109;0.00249)|Lung NSC(97;0.0177)|all_lung(97;0.018)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.34e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0311)		ACGAGGTTTTCCTGCCGGGAT	0.512													38	121					0	0	0.000814825	0	0
OR10G7	390265	broad.mit.edu	37	11	123909436	123909436	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:123909436G>A	uc001pzq.1	-	1	273	c.273C>T	c.(271-273)ATC>ATT	p.I91I		NM_001004463	NP_001004463	Q8NGN6	O10G7_HUMAN	olfactory receptor, family 10, subfamily G,	91	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		TGTGGAAGGAGATAGTCCTGC	0.527													37	141					0	0	0.00195071	0	0
OR8D1	283159	broad.mit.edu	37	11	124180060	124180060	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:124180060G>A	uc010sag.1	-	1	603	c.603C>T	c.(601-603)ATC>ATT	p.I201I		NM_001002917	NP_001002917	Q8WZ84	OR8D1_HUMAN	olfactory receptor, family 8, subfamily D,	201	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0528)		ACCCCGCAATGATAAAAAGTA	0.488													7	3					0	0	0.000274275	0	0
AKAP3	10566	broad.mit.edu	37	12	4736421	4736421	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr12:4736421G>A	uc001qnb.3	-	4	1876	c.1647C>T	c.(1645-1647)AGC>AGT	p.S549S		NM_006422	NP_006413	O75969	AKAP3_HUMAN	A-kinase anchor protein 3	549					acrosome reaction|cellular component movement	acrosomal vesicle	protein kinase A binding			skin(3)|large_intestine(1)|ovary(1)|kidney(1)	6						CTTCAACGAAGCTCCGTGCAT	0.527													16	11					0	0	0.000422831	0	0
CHD4	1108	broad.mit.edu	37	12	6705212	6705212	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr12:6705212G>A	uc001qpo.2	-	13	2148	c.1984C>T	c.(1984-1986)CAG>TAG	p.Q662*	CHD4_uc001qpn.2_Nonsense_Mutation_p.Q655*|CHD4_uc001qpp.2_Nonsense_Mutation_p.Q659*	NM_001273	NP_001264	Q14839	CHD4_HUMAN	chromodomain helicase DNA binding protein 4	662	Chromo 2.				chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|zinc ion binding			central_nervous_system(2)	2						TCGTAATCCTGGATCTCCACA	0.423													17	105					0	0	0.000566183	0	0
C1S	716	broad.mit.edu	37	12	7169848	7169848	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr12:7169848C>T	uc001qsj.2	+	6	794	c.75C>T	c.(73-75)TCC>TCT	p.S25S	C1S_uc001qsk.2_Silent_p.S25S|C1S_uc001qsl.2_Silent_p.S25S|C1S_uc009zfr.2_Intron|C1S_uc009zfs.2_RNA	NM_201442	NP_958850	P09871	C1S_HUMAN	complement component 1, s subcomponent	25	CUB 1.				complement activation, classical pathway|innate immune response|proteolysis	extracellular region	calcium ion binding|serine-type endopeptidase activity			skin(1)	1					Abciximab(DB00054)|Adalimumab(DB00051)|Basiliximab(DB00074)|Cetuximab(DB00002)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Rituximab(DB00073)|Trastuzumab(DB00072)	AGATCCTGTCCCCTAACTATC	0.478													59	46					0	0	0.000781405	0	0
C1S	716	broad.mit.edu	37	12	7177568	7177568	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr12:7177568G>A	uc001qsj.2	+	15	2399	c.1680G>A	c.(1678-1680)ATG>ATA	p.M560I	C1S_uc001qsk.2_Missense_Mutation_p.M560I|C1S_uc001qsl.2_Missense_Mutation_p.M560I|C1S_uc009zfr.2_Missense_Mutation_p.M393I|C1S_uc009zfs.2_RNA	NM_201442	NP_958850	P09871	C1S_HUMAN	complement component 1, s subcomponent	560	Peptidase S1.				complement activation, classical pathway|innate immune response|proteolysis	extracellular region	calcium ion binding|serine-type endopeptidase activity			skin(1)	1					Abciximab(DB00054)|Adalimumab(DB00051)|Basiliximab(DB00074)|Cetuximab(DB00002)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Rituximab(DB00073)|Trastuzumab(DB00072)	ACAACCTCATGGATGGGGACC	0.547													6	28					0	0	0.00116845	0	0
CD163	9332	broad.mit.edu	37	12	7640420	7640420	+	Missense_Mutation	SNP	G	A	A	rs61729511	byFrequency	TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr12:7640420G>A	uc001qsz.3	-	7	1812	c.1684C>T	c.(1684-1686)CGC>TGC	p.R562C	CD163_uc001qta.3_Missense_Mutation_p.R562C|CD163_uc009zfw.2_Missense_Mutation_p.R562C	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	562	SRCR 5.|Extracellular (Potential).				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						CCTTCTGGGCGGGGTGCTACT	0.507													9	40					0	0	0.000274275	0	0
CLEC6A	93978	broad.mit.edu	37	12	8629945	8629945	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr12:8629945C>T	uc001qum.1	+	6	632	c.515C>T	c.(514-516)TCT>TTT	p.S172F		NM_001007033	NP_001007034	Q6EIG7	CLC6A_HUMAN	dectin-2	172	Extracellular (Potential).|C-type lectin.				defense response to fungus|innate immune response|positive regulation of cytokine secretion|positive regulation of I-kappaB kinase/NF-kappaB cascade	integral to membrane	sugar binding			breast(1)	1	Lung SC(5;0.184)					CCCAATCATTCTGCAGAGCAA	0.378													5	47					0	0	0.000157383	0	0
PRB1	5542	broad.mit.edu	37	12	11506664	11506664	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr12:11506664C>T	uc001qzw.1	-	3	410	c.373G>A	c.(373-375)GGA>AGA	p.G125R	PRB1_uc001qzu.1_Intron|PRB1_uc001qzv.1_Intron	NM_005039	NP_005030	P04280	PRP1_HUMAN	proline-rich protein BstNI subfamily 1 isoform 1	186	7.|15 X 20 AA approximate tandem repeats of P-P-G-K-P-Q-G-P-P-[PAQ]-Q-[GE]-[GD]- [NKS]-[KSQRN]-[PRQS]-[QS] [GPS]-[PQAR]- [PSR].		Missing (in clone CP-4).|Missing (in clone CP-5).|Missing (in allele S).			extracellular region					0			OV - Ovarian serous cystadenocarcinoma(49;0.185)			CTGTTGCCTCCTTGTGGGGGT	0.602													33	442					0	0	0.00128727	0	0
PRB1	5542	broad.mit.edu	37	12	11506847	11506847	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr12:11506847C>T	uc001qzw.1	-	3	227	c.190G>A	c.(190-192)GGA>AGA	p.G64R	PRB1_uc001qzu.1_Missense_Mutation_p.G64R|PRB1_uc001qzv.1_Missense_Mutation_p.G64R	NM_005039	NP_005030	P04280	PRP1_HUMAN	proline-rich protein BstNI subfamily 1 isoform 1	125	15 X 20 AA approximate tandem repeats of P-P-G-K-P-Q-G-P-P-[PAQ]-Q-[GE]-[GD]- [NKS]-[KSQRN]-[PRQS]-[QS] [GPS]-[PQAR]- [PSR].|4.		Missing (in clone CP-4).|Missing (in clone CP-5).|Missing (in allele M).			extracellular region					0			OV - Ovarian serous cystadenocarcinoma(49;0.185)			TTGTTGCCTCCTTGTGGGGGT	0.607													6	241					0	0	0.00244969	0	0
GUCY2C	2984	broad.mit.edu	37	12	14836052	14836052	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr12:14836052C>T	uc001rcd.2	-	4	672	c.535G>A	c.(535-537)GAT>AAT	p.D179N	GUCY2C_uc009zhz.2_Missense_Mutation_p.D179N	NM_004963	NP_004954	P25092	GUC2C_HUMAN	guanylate cyclase 2C precursor	179	Extracellular (Potential).				intracellular signal transduction|receptor guanylyl cyclase signaling pathway	integral to membrane	ATP binding|GTP binding|guanylate cyclase activity|protein binding|protein kinase activity|receptor activity			ovary(4)|skin(2)	6						AAGGGCAGATCGTTGGTTTTC	0.378													10	16					0	0	0.000442599	0	0
PTPRO	5800	broad.mit.edu	37	12	15654688	15654688	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr12:15654688C>T	uc001rcv.1	+	5	970	c.796C>T	c.(796-798)CAT>TAT	p.H266Y	PTPRO_uc001rcw.1_Missense_Mutation_p.H266Y|PTPRO_uc001rcu.1_Missense_Mutation_p.H266Y	NM_030667	NP_109592	Q16827	PTPRO_HUMAN	receptor-type protein tyrosine phosphatase O	266	Fibronectin type-III 3.|Extracellular (Potential).					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			skin(5)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)	9		Hepatocellular(102;0.244)				AAAACTCTTCCATTTTACAGA	0.398													4	20					0	0	0.000602214	0	0
PIK3C2G	5288	broad.mit.edu	37	12	18552663	18552663	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr12:18552663C>T	uc001rdt.2	+	15	2190	c.2074C>T	c.(2074-2076)CCT>TCT	p.P692S	PIK3C2G_uc010sia.1_RNA|PIK3C2G_uc010sib.1_Missense_Mutation_p.P733S|PIK3C2G_uc010sic.1_Missense_Mutation_p.P511S	NM_004570	NP_004561	O75747	P3C2G_HUMAN	phosphoinositide-3-kinase, class 2 gamma	692					cell communication|phosphatidylinositol-mediated signaling	membrane|phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity			lung(8)|central_nervous_system(6)|breast(3)|stomach(2)|ovary(2)	21		Hepatocellular(102;0.194)				CTGCTCCCTTCCTTTAGTCCT	0.383													43	42					0	0	0.000781405	0	0
ABCC9	10060	broad.mit.edu	37	12	22001161	22001161	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr12:22001161G>C	uc001rfi.1	-	23	2809	c.2789C>G	c.(2788-2790)ACT>AGT	p.T930S	ABCC9_uc001rfh.2_Missense_Mutation_p.T930S|ABCC9_uc001rfj.1_Missense_Mutation_p.T894S	NM_005691	NP_005682	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9	930	Cytoplasmic (Potential).				defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity			ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	CTCTAAAGTAGTTTGGTCAGC	0.418													9	15					0	0	0.00136819	0	0
CCDC91	55297	broad.mit.edu	37	12	28459758	28459758	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr12:28459758C>T	uc001riq.2	+	4	367	c.351C>T	c.(349-351)GCC>GCT	p.A117A	CCDC91_uc001rio.2_Silent_p.A87A|CCDC91_uc009zjk.2_RNA|CCDC91_uc001rip.1_Silent_p.A117A|CCDC91_uc001rir.2_5'UTR|CCDC91_uc009zjl.2_5'UTR	NM_018318	NP_060788	Q7Z6B0	CCD91_HUMAN	GGA binding partner	117					protein transport	Golgi apparatus|membrane				central_nervous_system(1)	1	Acute lymphoblastic leukemia(23;0.00718)|all_hematologic(23;0.0113)|Lung SC(9;0.184)					GAACAATTGCCCTTGTGGATG	0.358													4	10					0	0	0.000602214	0	0
AMN1	196394	broad.mit.edu	37	12	31842014	31842014	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr12:31842014C>T	uc001rkq.3	-	6	796	c.630G>A	c.(628-630)GGG>GGA	p.G210G	AMN1_uc001rko.3_Silent_p.G192G|AMN1_uc010skc.1_Silent_p.G192G|AMN1_uc001rkp.3_Silent_p.G192G|AMN1_uc009zjs.2_RNA|AMN1_uc009zjt.1_RNA	NM_001113402	NP_001106873	Q8IY45	AMN1_HUMAN	antagonist of mitotic exit network 1 homolog	210											0	all_cancers(9;7.41e-12)|all_epithelial(9;1.18e-11)|all_lung(12;1.14e-10)|Acute lymphoblastic leukemia(23;0.0122)|Lung SC(12;0.0336)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.162)		OV - Ovarian serous cystadenocarcinoma(6;0.0014)			CTTCGACAGCCCCATCAGTCA	0.328													8	22					0	0	0.000157383	0	0
KIF21A	55605	broad.mit.edu	37	12	39709037	39709037	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr12:39709037G>A	uc001rly.2	-	31	4099	c.3953C>T	c.(3952-3954)TCC>TTC	p.S1318F	KIF21A_uc001rlv.2_Intron|KIF21A_uc001rlw.2_Intron|KIF21A_uc001rlx.2_Missense_Mutation_p.S1305F|KIF21A_uc001rlz.2_Intron|KIF21A_uc010skl.1_Intron|KIF21A_uc001rlt.2_5'Flank|KIF21A_uc001rlu.2_5'UTR	NM_017641	NP_060111	Q7Z4S6	KI21A_HUMAN	kinesin family member 21A	1318					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(4)|pancreas(1)|lung(1)|skin(1)	7		Lung NSC(34;0.179)|all_lung(34;0.213)				CTACCTTCTGGAGGATCTGCT	0.383													34	195					0	0	0.00128727	0	0
ABCD2	225	broad.mit.edu	37	12	40001459	40001459	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr12:40001459C>T	uc001rmb.2	-	3	1604	c.1178G>A	c.(1177-1179)CGA>CAA	p.R393Q		NM_005164	NP_005155	Q9UBJ2	ABCD2_HUMAN	ATP-binding cassette, sub-family D, member 2	393	ABC transmembrane type-1.				fatty acid metabolic process|transport	ATP-binding cassette (ABC) transporter complex|integral to plasma membrane|peroxisomal membrane	ATP binding|ATPase activity|protein binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)|central_nervous_system(1)|skin(1)	6						CAGTAAATTTCGAGCAGTGGT	0.323													18	72					0	0	0.00074312	0	0
PDZRN4	29951	broad.mit.edu	37	12	41967242	41967242	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr12:41967242G>A	uc010skn.1	+	10	2132	c.2064G>A	c.(2062-2064)ATG>ATA	p.M688I	PDZRN4_uc001rmq.3_Missense_Mutation_p.M629I|PDZRN4_uc009zjz.2_Missense_Mutation_p.M627I|PDZRN4_uc001rmr.2_Missense_Mutation_p.M514I	NM_013377	NP_037509	Q6ZMN7	PZRN4_HUMAN	PDZ domain containing RING finger 4 isoform 2	887							ubiquitin-protein ligase activity|zinc ion binding			lung(3)|skin(3)|ovary(2)|large_intestine(1)|kidney(1)|pancreas(1)	11	all_cancers(12;0.000673)	Lung NSC(34;0.0205)|all_lung(34;0.0264)				AGCCCAAGATGGAATGGAAGG	0.488													34	33					0	0	0.00058488	0	0
ADAMTS20	80070	broad.mit.edu	37	12	43777628	43777628	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr12:43777628C>T	uc010skx.1	-	30	4605	c.4605G>A	c.(4603-4605)GGG>GGA	p.G1535G		NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	1535	TSP type-1 13.					proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		CTCTTTCCATCCCCTTGTGCT	0.433													42	45					0	0	0.000680045	0	0
NELL2	4753	broad.mit.edu	37	12	45169851	45169851	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr12:45169851C>T	uc001rog.2	-	8	1440	c.845G>A	c.(844-846)CGA>CAA	p.R282Q	NELL2_uc001rof.3_Missense_Mutation_p.R281Q|NELL2_uc001roh.2_Missense_Mutation_p.R282Q|NELL2_uc009zkd.2_Missense_Mutation_p.R281Q|NELL2_uc010skz.1_Missense_Mutation_p.R332Q|NELL2_uc010sla.1_Missense_Mutation_p.R305Q|NELL2_uc001roi.1_Missense_Mutation_p.R282Q|NELL2_uc010slb.1_Missense_Mutation_p.R281Q|NELL2_uc001roj.2_Missense_Mutation_p.R282Q	NM_001145108	NP_001138580	Q99435	NELL2_HUMAN	NEL-like protein 2 isoform b precursor	282	VWFC 1.				cell adhesion	extracellular region	calcium ion binding|protein binding|structural molecule activity			skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	4	Lung SC(27;0.192)	Lung NSC(34;0.144)		GBM - Glioblastoma multiforme(48;0.092)		CTCAAATTCTCGGTAGGTGGT	0.468													7	41					0	0	0.000157383	0	0
HDAC7	51564	broad.mit.edu	37	12	48191897	48191897	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr12:48191897G>A	uc009zkv.1	-	3	553	c.338C>T	c.(337-339)CCC>CTC	p.P113L	HDAC7_uc010slo.1_Missense_Mutation_p.P152L|HDAC7_uc001rqj.3_Missense_Mutation_p.P152L|HDAC7_uc001rqk.3_Missense_Mutation_p.P135L			Q8WUI4	HDAC7_HUMAN	Synthetic construct DNA, clone: pF1KB0470, Homo sapiens HDAC7 gene for histone deacetylase 7, without stop codon, in Flexi system.	113	Interaction with MEF2A (By similarity).|Transcription repression 1 (By similarity).				negative regulation of interleukin-2 production|negative regulation of osteoblast differentiation|positive regulation of cell migration involved in sprouting angiogenesis|transcription, DNA-dependent	cytoplasm|histone deacetylase complex	activating transcription factor binding|histone deacetylase activity (H3-K16 specific)|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|protein kinase C binding|repressing transcription factor binding			lung(1)|breast(1)	2				GBM - Glioblastoma multiforme(48;0.137)		TTACCTGTAGGGAATGCCGGG	0.597													123	160					0	0	0.000781405	0	0
ZNF641	121274	broad.mit.edu	37	12	48738490	48738490	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr12:48738490G>A	uc001rrn.1	-	5	619	c.454C>T	c.(454-456)CCA>TCA	p.P152S	ZNF641_uc001rro.1_Missense_Mutation_p.P138S|ZNF641_uc010sls.1_Missense_Mutation_p.P129S	NM_152320	NP_689533	Q96N77	ZN641_HUMAN	zinc finger protein 641	152	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)	2						TTGGGAATTGGAAATCCTGCT	0.408													38	28					0	0	0.0025221	0	0
ADCY6	112	broad.mit.edu	37	12	49167748	49167748	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr12:49167748G>A	uc001rsh.3	-	14	3077	c.2417C>T	c.(2416-2418)ACC>ATC	p.T806I	ADCY6_uc001rsj.3_Missense_Mutation_p.T806I|ADCY6_uc001rsi.3_Intron|ADCY6_uc010slw.1_5'UTR	NM_015270	NP_056085	O43306	ADCY6_HUMAN	adenylate cyclase 6 isoform a	806	Extracellular (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane	ATP binding|metal ion binding				0						GGTGGGCATGGTGCCCTCACA	0.557													11	17					0	0	0.00136819	0	0
MLL2	8085	broad.mit.edu	37	12	49435116	49435116	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr12:49435116G>A	uc001rta.3	-	31	6437	c.6437C>T	c.(6436-6438)CCG>CTG	p.P2146L		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	2146	Pro-rich.				chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						CGAGCCCGCCGGCGGCTTCAG	0.697			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			7	4					0	0	0.000157383	0	0
MLL2	8085	broad.mit.edu	37	12	49444788	49444788	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr12:49444788G>A	uc001rta.3	-	10	2678	c.2678C>T	c.(2677-2679)CCC>CTC	p.P893L		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	893	Pro-rich.			Missing (in Ref. 1; AAC51734).	chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						TCCAAGCAAGGGAGATAAGGA	0.647			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			38	52					0	0	0.00148497	0	0
KRT6A	3853	broad.mit.edu	37	12	52882228	52882228	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr12:52882228C>T	uc001sam.2	-	7	1517	c.1308G>A	c.(1306-1308)AAG>AAA	p.K436K		NM_005554	NP_005545	P02538	K2C6A_HUMAN	keratin 6A	436	Rod.|Coil 2.				cell differentiation|ectoderm development|positive regulation of cell proliferation	keratin filament	protein binding|structural constituent of cytoskeleton			ovary(4)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(357;0.189)		CCTGCTTGGCCTTCTGCAGGG	0.622													21	106					0	0	0.00278032	0	0
AAAS	8086	broad.mit.edu	37	12	53715282	53715282	+	Translation_Start_Site	SNP	A	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr12:53715282A>T	uc001scr.3	-	1	131	c.-32T>A	c.(-34--30)GTTTG>GTATG		AAAS_uc001scs.3_Translation_Start_Site	NM_015665	NP_056480	Q9NRG9	AAAS_HUMAN	achalasia, adrenocortical insufficiency,						carbohydrate metabolic process|glucose transport|nucleocytoplasmic transport|regulation of glucose transport|regulation of nucleocytoplasmic transport|transmembrane transport|viral reproduction	nuclear pore				ovary(1)	1						GCAGTCGGCAAACTCCTGGCC	0.612											OREG0021865	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	53	66					0	0	0.000781405	0	0
HOXC11	3227	broad.mit.edu	37	12	54367499	54367499	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr12:54367499C>T	uc001sem.2	+	1	590	c.474C>T	c.(472-474)GCC>GCT	p.A158A		NM_014212	NP_055027	O43248	HXC11_HUMAN	homeobox C11	158					endoderm development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						TCGACAACGCCTACTGCGGTG	0.716			T	NUP98	AML								16	57					0	0	0.000308642	0	0
NCKAP1L	3071	broad.mit.edu	37	12	54930765	54930765	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr12:54930765C>T	uc001sgc.3	+	29	3190	c.3111C>T	c.(3109-3111)ATC>ATT	p.I1037I	NCKAP1L_uc010sox.1_Silent_p.I579I|NCKAP1L_uc010soy.1_Silent_p.I987I	NM_005337	NP_005328	P55160	NCKPL_HUMAN	NCK-associated protein 1-like	1037					actin polymerization-dependent cell motility|B cell homeostasis|B cell receptor signaling pathway|cortical actin cytoskeleton organization|erythrocyte development|maintenance of cell polarity|myeloid cell homeostasis|negative regulation of apoptosis|negative regulation of interleukin-17 production|negative regulation of interleukin-6 production|negative regulation of myosin-light-chain-phosphatase activity|neutrophil chemotaxis|positive regulation of actin filament polymerization|positive regulation of B cell differentiation|positive regulation of B cell proliferation|positive regulation of CD4-positive, alpha-beta T cell differentiation|positive regulation of CD8-positive, alpha-beta T cell differentiation|positive regulation of cell adhesion mediated by integrin|positive regulation of erythrocyte differentiation|positive regulation of gamma-delta T cell differentiation|positive regulation of neutrophil chemotaxis|positive regulation of phagocytosis, engulfment|positive regulation of T cell proliferation|protein complex assembly|response to drug|T cell homeostasis	cytosol|integral to plasma membrane|membrane fraction|SCAR complex	protein complex binding|protein kinase activator activity|Rac GTPase activator activity			ovary(3)|central_nervous_system(1)	4						CCAAAGCCATCATCCAGGTGT	0.413													13	38					0	0	0.000958276	0	0
APOF	319	broad.mit.edu	37	12	56755826	56755826	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr12:56755826G>A	uc001sle.1	-	2	218	c.164C>T	c.(163-165)TCC>TTC	p.S55F		NM_001638	NP_001629	Q13790	APOF_HUMAN	apolipoprotein F precursor	55					cholesterol metabolic process	high-density lipoprotein particle|low-density lipoprotein particle	cholesterol binding|lipid transporter activity|receptor binding				0						GGGTGTCTGGGATTCCAAGGA	0.522													54	70					0	0	0.000781405	0	0
KIF5A	3798	broad.mit.edu	37	12	57976385	57976385	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr12:57976385G>A	uc001sor.1	+	27	3201	c.2993G>A	c.(2992-2994)GGA>GAA	p.G998E	KIF5A_uc010srr.1_Missense_Mutation_p.G909E|uc001sos.2_5'Flank	NM_004984	NP_004975	Q12840	KIF5A_HUMAN	kinesin family member 5A	998	Globular.				blood coagulation|cell death|microtubule-based movement|synaptic transmission	cytosol|kinesin complex|membrane fraction|microtubule|perinuclear region of cytoplasm	ATP binding|microtubule motor activity			ovary(2)|skin(1)	3						ATCTCTTCAGGAAATGCCACA	0.438													103	132					0	0	0.000781405	0	0
SLC16A7	9194	broad.mit.edu	37	12	60168918	60168918	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr12:60168918C>T	uc001sqs.2	+	5	1141	c.842C>T	c.(841-843)TCG>TTG	p.S281L	SLC16A7_uc001sqt.2_Missense_Mutation_p.S281L|SLC16A7_uc001squ.2_Missense_Mutation_p.S281L|SLC16A7_uc009zqi.2_Missense_Mutation_p.S182L|SLC16A7_uc010ssi.1_Missense_Mutation_p.S182L	NM_004731	NP_004722	O60669	MOT2_HUMAN	solute carrier family 16, member 7	281	Extracellular (Potential).					integral to plasma membrane|membrane fraction	pyruvate secondary active transmembrane transporter activity|secondary active monocarboxylate transmembrane transporter activity|symporter activity			ovary(1)	1				GBM - Glioblastoma multiforme(3;0.0303)	Pyruvic acid(DB00119)	GATGAGTACTCGGCAGCTTTT	0.388													17	25					0	0	0.00188189	0	0
PPM1H	57460	broad.mit.edu	37	12	63195741	63195741	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr12:63195741C>T	uc001srk.3	-	3	760	c.611G>A	c.(610-612)CGG>CAG	p.R204Q		NM_020700	NP_065751	Q9ULR3	PPM1H_HUMAN	protein phosphatase 1H (PP2C domain containing)	204	PP2C-like.						phosphoprotein phosphatase activity			lung(3)|ovary(1)	4			GBM - Glioblastoma multiforme(1;0.000443)|BRCA - Breast invasive adenocarcinoma(9;0.209)	GBM - Glioblastoma multiforme(28;0.0126)		GGTCAGAGTCCGGCTGTTGGC	0.682													18	76					0	0	0.00188189	0	0
CAND1	55832	broad.mit.edu	37	12	67699646	67699646	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr12:67699646C>T	uc001stn.2	+	10	2635	c.2198C>T	c.(2197-2199)TCC>TTC	p.S733F	CAND1_uc001sto.2_Missense_Mutation_p.S243F	NM_018448	NP_060918	Q86VP6	CAND1_HUMAN	TIP120 protein	733	HEAT 17.				cell differentiation|negative regulation of catalytic activity|protein ubiquitination|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|ubiquitin ligase complex	protein binding			central_nervous_system(1)|skin(1)	2			GBM - Glioblastoma multiforme(1;1.13e-10)|Lung(24;0.000342)|LUSC - Lung squamous cell carcinoma(43;0.196)	GBM - Glioblastoma multiforme(28;0.0279)		ATAAGTGGATCCATTCTCAAT	0.428													40	55					0	0	0.00128727	0	0
LGR5	8549	broad.mit.edu	37	12	71977943	71977944	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr12:71977943_71977944GG>TT	uc001swl.2	+	18	2201_2202	c.2153_2154GG>TT	c.(2152-2154)GGG>GTT	p.G718V	LGR5_uc001swm.2_Missense_Mutation_p.G694V|LGR5_uc001swn.1_Intron	NM_003667	NP_003658	O75473	LGR5_HUMAN	leucine-rich repeat-containing G protein-coupled	718	Extracellular (Potential).					integral to plasma membrane	protein-hormone receptor activity			lung(4)|skin(3)|ovary(1)|pancreas(1)	9						TTGCCTTTTGGGGAGCCCAGCA	0.564													11	489					0	0	6.4e-05	0	0
TRHDE	29953	broad.mit.edu	37	12	72893359	72893359	+	Missense_Mutation	SNP	G	A	A	rs147694605		TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr12:72893359G>A	uc001sxa.2	+	6	1561	c.1531G>A	c.(1531-1533)GAA>AAA	p.E511K		NM_013381	NP_037513	Q9UKU6	TRHDE_HUMAN	thyrotropin-releasing hormone degrading enzyme	511	Extracellular (Potential).				cell-cell signaling|proteolysis|signal transduction	integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding	p.E511K(1)		ovary(2)|skin(1)	3						AGTATCACAGGAAGTGCTGCA	0.453													6	4					0	0	0.00198382	0	0
KCNC2	3747	broad.mit.edu	37	12	75444474	75444474	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr12:75444474G>A	uc001sxg.1	-	3	1855	c.1311C>T	c.(1309-1311)ACC>ACT	p.T437T	KCNC2_uc009zry.2_Silent_p.T437T|KCNC2_uc001sxe.2_Silent_p.T437T|KCNC2_uc001sxf.2_Silent_p.T437T|KCNC2_uc010stw.1_Silent_p.T437T	NM_139137	NP_631875	Q96PR1	KCNC2_HUMAN	Shaw-related voltage-gated potassium channel	437	Selectivity filter (By similarity).				energy reserve metabolic process|regulation of insulin secretion	voltage-gated potassium channel complex	voltage-gated potassium channel activity			breast(2)|pancreas(2)|skin(1)|lung(1)	6						CATAACCCAGGGTAGTCATGG	0.542													4	7					0	0	0.00024832	0	0
MYF6	4618	broad.mit.edu	37	12	81102630	81102631	+	Missense_Mutation	DNP	GT	AA	AA			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr12:81102630_81102631GT>AA	uc001szf.1	+	3	673_674	c.620_621GT>AA	c.(619-621)AGT>AAA	p.S207K		NM_002469	NP_002460	P23409	MYF6_HUMAN	myogenic factor 6	207					muscle cell fate commitment|positive regulation of muscle cell differentiation|positive regulation of transcription from RNA polymerase II promoter|skeletal muscle tissue development	nucleoplasm	DNA binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1						GGAGGAGCAAGTATTGATTCGT	0.559													52	75					0	0	6.4e-05	0	0
C12orf12	196477	broad.mit.edu	37	12	91347577	91347577	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr12:91347577C>T	uc001tbj.2	-	1	1377	c.943G>A	c.(943-945)GAA>AAA	p.E315K		NM_152638	NP_689851	Q8TC90	CL012_HUMAN	hypothetical protein LOC196477	315	Potential.|Glu-rich.									central_nervous_system(1)|pancreas(1)	2						tcctcatcttcgacctcttcc	0.085													5	45					0	0	0.000602214	0	0
FGD6	55785	broad.mit.edu	37	12	95603831	95603831	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr12:95603831G>A	uc001tdp.3	-	2	1453	c.1229C>T	c.(1228-1230)TCC>TTC	p.S410F	FGD6_uc009zsx.2_Intron	NM_018351	NP_060821	Q6ZV73	FGD6_HUMAN	FYVE, RhoGEF and PH domain containing 6	410					actin cytoskeleton organization|filopodium assembly|regulation of Cdc42 GTPase activity|regulation of cell shape	cytoskeleton|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(2)|breast(1)	3						TTTTTCAAAGGAAGTTGTTTC	0.378													23	92					0	0	0.00106085	0	0
USP44	84101	broad.mit.edu	37	12	95926668	95926668	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr12:95926668C>T	uc001teg.2	-	2	1509	c.1365G>A	c.(1363-1365)AGG>AGA	p.R455R	USP44_uc001teh.2_Silent_p.R455R|USP44_uc009zte.2_Silent_p.R452R	NM_001042403	NP_001035862	Q9H0E7	UBP44_HUMAN	ubiquitin thiolesterase 44	455					anaphase|cell division|mitosis|negative regulation of mitotic anaphase-promoting complex activity|protein deubiquitination|regulation of spindle checkpoint|ubiquitin-dependent protein catabolic process	nucleus	protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			lung(1)|breast(1)|central_nervous_system(1)	3						TGATGAGTTTCCTTTGAGAAG	0.338													9	59					0	0	0.000978159	0	0
NTN4	59277	broad.mit.edu	37	12	96181188	96181188	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr12:96181188C>T	uc001tei.2	-	2	563	c.114G>A	c.(112-114)ATG>ATA	p.M38I	NTN4_uc009ztf.2_Missense_Mutation_p.M38I|NTN4_uc009ztg.2_Missense_Mutation_p.M1I	NM_021229	NP_067052	Q9HB63	NET4_HUMAN	netrin 4 precursor	38	Laminin N-terminal.				axon guidance	basement membrane|plasma membrane				upper_aerodigestive_tract(1)|ovary(1)	2						CCAAATTTCCCATCCGAGGGT	0.507													12	60					0	0	0.000566183	0	0
DEPDC4	120863	broad.mit.edu	37	12	100657564	100657564	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr12:100657564C>T	uc001thi.2	-	2	268	c.265G>A	c.(265-267)GAC>AAC	p.D89N	DEPDC4_uc001thh.1_RNA|DEPDC4_uc001thj.1_Intron|DEPDC4_uc009ztv.1_Missense_Mutation_p.D89N|DEPDC4_uc001thk.1_Intron|DEPDC4_uc001thl.1_Intron	NM_152317	NP_689530	Q8N2C3	DEPD4_HUMAN	DEP domain containing 4	89	DEP.				intracellular signal transduction						0						GTGAAACAGTCTTTGTATGTC	0.413													48	60					0	0	0.000781405	0	0
NR1H4	9971	broad.mit.edu	37	12	100928737	100928737	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr12:100928737C>T	uc001tht.1	+	4	726	c.698C>T	c.(697-699)ACC>ATC	p.T233I	NR1H4_uc001thp.1_Missense_Mutation_p.T219I|NR1H4_uc001thq.1_Missense_Mutation_p.T223I|NR1H4_uc010svj.1_RNA|NR1H4_uc001thr.1_Missense_Mutation_p.T223I|NR1H4_uc010svk.1_Missense_Mutation_p.T172I|NR1H4_uc001ths.1_Missense_Mutation_p.T229I	NM_005123	NP_005114	Q96RI1	NR1H4_HUMAN	nuclear receptor subfamily 1, group H, member 4	233					bile acid metabolic process|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|thyroid hormone receptor activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(1)|lung(1)|skin(1)	3						GCAGATCAGACCGTGAATGAA	0.423													31	23					0	0	0.0024448	0	0
STAB2	55576	broad.mit.edu	37	12	104078786	104078786	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr12:104078786C>T	uc001tjw.2	+	27	3107	c.2921C>T	c.(2920-2922)TCG>TTG	p.S974L		NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	974	Extracellular (Potential).|EGF-like 10.				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						CAATCTACTTCGTCTGGTGTC	0.453													73	90					0	0	0.000781405	0	0
GIT2	9815	broad.mit.edu	37	12	110377017	110377017	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr12:110377017C>A	uc001tps.2	-	17	1932	c.1767G>T	c.(1765-1767)GAG>GAT	p.E589D	TCHP_uc001tpo.1_Intron|GIT2_uc001tpr.2_Missense_Mutation_p.E129D|GIT2_uc001tpq.2_Missense_Mutation_p.E559D|GIT2_uc001tpv.2_Missense_Mutation_p.E511D|GIT2_uc001tpu.2_Missense_Mutation_p.E509D|GIT2_uc001tpt.2_Missense_Mutation_p.E461D|GIT2_uc010sxu.1_Missense_Mutation_p.E497D	NM_057169	NP_476510	Q14161	GIT2_HUMAN	G protein-coupled receptor kinase interacting	589					regulation of ARF GTPase activity|regulation of G-protein coupled receptor protein signaling pathway	nucleoplasm	ARF GTPase activator activity|protein binding|zinc ion binding			central_nervous_system(1)	1						CGTAGTCACTCTCAGGTGTGC	0.567													31	161					3.90053e-15	1.84116e-14	0.0024448	1	0
NAA25	80018	broad.mit.edu	37	12	112481007	112481007	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr12:112481007G>A	uc001ttm.2	-	19	2279	c.2259C>T	c.(2257-2259)TTC>TTT	p.F753F	NAA25_uc001ttn.3_RNA|NAA25_uc009zvz.1_Silent_p.F725F|NAA25_uc009zwa.1_Silent_p.F753F	NM_024953	NP_079229	Q14CX7	NAA25_HUMAN	mitochondrial distribution and morphology 20	753						cytoplasm	protein binding			ovary(1)|breast(1)|pancreas(1)	3						CAGGACCAAGGAAAGGATACT	0.353													15	55					0	0	0.000308642	0	0
C12orf51	283450	broad.mit.edu	37	12	112616802	112616802	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr12:112616802C>A	uc009zwc.2	-	57	10048	c.10030G>T	c.(10030-10032)GTG>TTG	p.V3344L		NM_001109662	NP_001103132			chromosome 12 open reading frame 51											ovary(1)|lung(1)	2						GTGCTCACCACCTTCACGGGG	0.622													5	17					1.23904e-05	5.799e-05	0.000602214	1	0
DDX54	79039	broad.mit.edu	37	12	113599084	113599084	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr12:113599084G>A	uc001tup.2	-	19	2432	c.2404C>T	c.(2404-2406)CGT>TGT	p.R802C	DDX54_uc001tuq.3_Missense_Mutation_p.R802C	NM_024072	NP_076977	Q8TDD1	DDX54_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 54	802					estrogen receptor signaling pathway|regulation of transcription, DNA-dependent|RNA processing|transcription, DNA-dependent	nucleolus	ATP binding|ATP-dependent RNA helicase activity|estrogen receptor binding|RNA binding|transcription corepressor activity			skin(2)|central_nervous_system(1)	3						CCTTGGCCACGGTCTCGCTTC	0.577													32	40					0	0	0.00058488	0	0
TBX5	6910	broad.mit.edu	37	12	114841557	114841557	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr12:114841557C>T	uc001tvo.2	-	2	642	c.147G>A	c.(145-147)CAG>CAA	p.Q49Q	TBX5_uc001tvp.2_Silent_p.Q49Q|TBX5_uc001tvq.2_Intron|TBX5_uc010syv.1_Silent_p.Q49Q	NM_181486	NP_852259	Q99593	TBX5_HUMAN	T-box 5 isoform 1	49			Q -> K (in HOS).	GFGLAHTPLEPDAKDLPCDSKPESALGAPSKSPSSPQAAFT QQ -> ALAGAHLWSLTQKTCLRFEPRARSGPPASPPGRPR SRLHPA (in Ref. 1; CAA70592).	cardiac left ventricle formation|cell migration involved in coronary vasculogenesis|cell-cell signaling|embryonic arm morphogenesis|induction of apoptosis|negative regulation of cardiac muscle cell proliferation|negative regulation of cell migration|negative regulation of epithelial to mesenchymal transition|pericardium development|positive regulation of cardioblast differentiation|positive regulation of transcription from RNA polymerase II promoter|ventricular septum development	cytoplasm|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding			ovary(6)|pancreas(1)|skin(1)	8	Medulloblastoma(191;0.163)|all_neural(191;0.178)			BRCA - Breast invasive adenocarcinoma(302;0.0893)		GTCTCCTTACCTGCTGGGTGA	0.602													54	63					0	0	0.000781405	0	0
NOS1	4842	broad.mit.edu	37	12	117768166	117768166	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr12:117768166C>T	uc001twm.1	-	2	1395	c.709G>A	c.(709-711)GGA>AGA	p.G237R		NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	237	PIN (nNOS-inhibiting protein) binding.				multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	ACCTGGATTCCCATATCTTTC	0.413													36	58					0	0	0.000953801	0	0
HNF1A	6927	broad.mit.edu	37	12	121426788	121426788	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr12:121426788C>A	uc001tzg.2	+	2	502	c.479C>A	c.(478-480)GCC>GAC	p.A160D	HNF1A_uc001tze.1_Missense_Mutation_p.A160D|HNF1A_uc001tzf.2_Missense_Mutation_p.A160D|HNF1A_uc010szn.1_Missense_Mutation_p.A160D	NM_000545	NP_000536	P20823	HNF1A_HUMAN	hepatic nuclear factor-1-alpha	160					glucose homeostasis|glucose import|insulin secretion|positive regulation of transcription initiation from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|renal glucose absorption	cytoplasm|nucleus|protein complex	DNA binding|protein dimerization activity|protein heterodimerization activity|protein homodimerization activity|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding	p.R159fs*26(1)		liver(92)|large_intestine(15)|endometrium(6)|breast(2)|lung(1)	116	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					CAGAAGCGGGCCGCCCTGTAC	0.627									Hepatic_Adenoma_Familial_Clustering_of				43	289					6.57855e-14	3.1026e-13	0.00222228	1	0
C12orf43	64897	broad.mit.edu	37	12	121441993	121441994	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr12:121441993_121441994GG>TT	uc001tzh.1	-	6	774_775	c.751_752CC>AA	c.(751-753)CCA>AAA	p.P251K	C12orf43_uc009zxa.1_Missense_Mutation_p.P282K|C12orf43_uc010szo.1_Missense_Mutation_p.P210K|C12orf43_uc010szp.1_Missense_Mutation_p.P241K|C12orf43_uc001tzi.1_Missense_Mutation_p.P252K	NM_022895	NP_075046	Q96C57	CL043_HUMAN	hypothetical protein LOC64897	251											0	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					CTTTGCTGGTGGGAATGGAGAG	0.569													14	746					0	0	6.4e-05	0	0
C12orf43	64897	broad.mit.edu	37	12	121442062	121442063	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr12:121442062_121442063CC>AA	uc001tzh.1	-	6	705_706	c.682_683GG>TT	c.(682-684)GGG>TTG	p.G228L	C12orf43_uc009zxa.1_Missense_Mutation_p.G259L|C12orf43_uc010szo.1_Missense_Mutation_p.G187L|C12orf43_uc010szp.1_Missense_Mutation_p.G218L|C12orf43_uc001tzi.1_Missense_Mutation_p.G229L	NM_022895	NP_075046	Q96C57	CL043_HUMAN	hypothetical protein LOC64897	228	Lys-rich.										0	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					CACCTGGTCCCCGTTGAGCTCA	0.559													14	887					0	0	6.4e-05	0	0
DNAH10	196385	broad.mit.edu	37	12	124268613	124268613	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr12:124268613C>T	uc001uft.3	+	8	961	c.936C>T	c.(934-936)TCC>TCT	p.S312S		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	312	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		TCAAGGAATCCGACTCCATGC	0.468													47	72					0	0	0.000781405	0	0
TMEM132B	114795	broad.mit.edu	37	12	125834576	125834577	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr12:125834576_125834577GG>AA	uc001uhe.1	+	2	639_640	c.631_632GG>AA	c.(631-633)GGG>AAG	p.G211K		NM_052907	NP_443139	Q14DG7	T132B_HUMAN	transmembrane protein 132B	211	Extracellular (Potential).					integral to membrane				skin(11)|ovary(5)|large_intestine(1)|pancreas(1)|breast(1)	19	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000423)|Epithelial(86;0.00394)|all cancers(50;0.0362)		AGCCCTGCTCGGGGGCACCACG	0.629													8	37					0	0	6.4e-05	0	0
TMEM132B	114795	broad.mit.edu	37	12	126138453	126138453	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr12:126138453G>A	uc001uhe.1	+	9	2442	c.2434G>A	c.(2434-2436)GAC>AAC	p.D812N	TMEM132B_uc001uhf.1_Missense_Mutation_p.D324N	NM_052907	NP_443139	Q14DG7	T132B_HUMAN	transmembrane protein 132B	812	Extracellular (Potential).					integral to membrane				skin(11)|ovary(5)|large_intestine(1)|pancreas(1)|breast(1)	19	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000423)|Epithelial(86;0.00394)|all cancers(50;0.0362)		GGAATATAAAGACCACCTCAG	0.483													35	41					0	0	0.000814825	0	0
TMEM132D	121256	broad.mit.edu	37	12	130015697	130015697	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr12:130015697G>A	uc009zyl.1	-	3	1350	c.1022C>T	c.(1021-1023)TCC>TTC	p.S341F		NM_133448	NP_597705	Q14C87	T132D_HUMAN	transmembrane protein 132D precursor	341	Extracellular (Potential).					integral to membrane				ovary(10)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	14	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0934)|Breast(359;0.133)		OV - Ovarian serous cystadenocarcinoma(86;0.000288)|Epithelial(86;0.0116)|all cancers(50;0.0246)		ATCCCAAATGGAAGGGCTGCT	0.537													17	70					0	0	0.00074312	0	0
PIWIL1	9271	broad.mit.edu	37	12	130840172	130840172	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr12:130840172G>A	uc001uik.2	+	12	1454	c.1364G>A	c.(1363-1365)AGA>AAA	p.R455K	PIWIL1_uc001uij.1_Missense_Mutation_p.R455K	NM_004764	NP_004755	Q96J94	PIWL1_HUMAN	piwi-like 1	455					gene silencing by RNA|meiosis|multicellular organismal development|regulation of translation|spermatid development	chromatoid body|P granule	mRNA binding|piRNA binding|protein binding			ovary(2)	2	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;3.02e-06)|Epithelial(86;3.85e-05)|all cancers(50;4.65e-05)		TTCTCAGGAAGAATTTTGCAA	0.294													31	146					0	0	0.001512	0	0
EP400	57634	broad.mit.edu	37	12	132514418	132514418	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr12:132514418C>T	uc001ujn.2	+	27	5589	c.5554C>T	c.(5554-5556)CCT>TCT	p.P1852S	EP400_uc001ujl.2_Missense_Mutation_p.P1851S|EP400_uc001ujm.2_Missense_Mutation_p.P1771S|SNORA49_uc001ujo.2_5'Flank	NM_015409	NP_056224	Q96L91	EP400_HUMAN	E1A binding protein p400	1888					histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent	NuA4 histone acetyltransferase complex|nuclear speck	ATP binding|DNA binding|helicase activity			central_nervous_system(4)|ovary(3)|breast(3)|skin(2)	12	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.198)		OV - Ovarian serous cystadenocarcinoma(86;3.01e-08)|Epithelial(86;3.43e-07)|all cancers(50;2.01e-06)		GCTGCAGTTCCCTGAGCTGAG	0.652													5	31					0	0	0.000602214	0	0
TPTE2	93492	broad.mit.edu	37	13	20039428	20039428	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr13:20039428C>T	uc001umd.2	-	10	854	c.643G>A	c.(643-645)GAT>AAT	p.D215N	TPTE2_uc009zzk.2_RNA|TPTE2_uc009zzl.2_Missense_Mutation_p.D104N|TPTE2_uc001ume.2_Missense_Mutation_p.D138N|TPTE2_uc009zzm.2_5'UTR|TPTE2_uc010tcm.1_RNA	NM_199254	NP_954863	Q6XPS3	TPTE2_HUMAN	TPTE and PTEN homologous inositol lipid	215	Phosphatase tensin-type.					endoplasmic reticulum membrane|integral to membrane	ion channel activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity				0		all_cancers(29;1.23e-20)|all_lung(29;1.97e-20)|all_epithelial(30;5.86e-20)|Lung NSC(5;3.36e-17)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;1.73e-05)|Epithelial(112;7.42e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.000785)|Lung(94;0.0176)|LUSC - Lung squamous cell carcinoma(192;0.089)		TCAAATCCATCCCTTGTGTAT	0.303													34	154					0	0	0.00170553	0	0
TPTE2	93492	broad.mit.edu	37	13	20039430	20039430	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr13:20039430C>T	uc001umd.2	-	10	852	c.641G>A	c.(640-642)AGG>AAG	p.R214K	TPTE2_uc009zzk.2_RNA|TPTE2_uc009zzl.2_Missense_Mutation_p.R103K|TPTE2_uc001ume.2_Missense_Mutation_p.R137K|TPTE2_uc009zzm.2_5'UTR|TPTE2_uc010tcm.1_RNA	NM_199254	NP_954863	Q6XPS3	TPTE2_HUMAN	TPTE and PTEN homologous inositol lipid	214	Phosphatase tensin-type.					endoplasmic reticulum membrane|integral to membrane	ion channel activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity				0		all_cancers(29;1.23e-20)|all_lung(29;1.97e-20)|all_epithelial(30;5.86e-20)|Lung NSC(5;3.36e-17)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;1.73e-05)|Epithelial(112;7.42e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.000785)|Lung(94;0.0176)|LUSC - Lung squamous cell carcinoma(192;0.089)		AAATCCATCCCTTGTGTATCG	0.294													34	149					0	0	0.00170553	0	0
XPO4	64328	broad.mit.edu	37	13	21436885	21436885	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr13:21436885G>A	uc001unq.3	-	3	324	c.288C>T	c.(286-288)TTC>TTT	p.F96F	XPO4_uc010tcr.1_Silent_p.F22F	NM_022459	NP_071904	Q9C0E2	XPO4_HUMAN	exportin 4	96					protein transport	cytoplasm|nucleus	protein binding			large_intestine(1)|ovary(1)|kidney(1)	3		all_cancers(29;5.05e-24)|all_epithelial(30;5.56e-20)|all_lung(29;2.38e-16)|Lung SC(185;0.0262)|Hepatocellular(188;0.244)		all cancers(112;0.000521)|Epithelial(112;0.000892)|OV - Ovarian serous cystadenocarcinoma(117;0.0148)|Lung(94;0.0189)|LUSC - Lung squamous cell carcinoma(192;0.0548)		AGGTTAAAAGGAATGTTCGCA	0.428													57	125					0	0	0.000781405	0	0
SGCG	6445	broad.mit.edu	37	13	23808844	23808844	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr13:23808844C>T	uc001uom.2	+	3	445	c.290C>T	c.(289-291)TCC>TTC	p.S97F	SGCG_uc009zzv.2_Missense_Mutation_p.S97F|SGCG_uc009zzw.2_Missense_Mutation_p.S97F	NM_000231	NP_000222	Q13326	SGCG_HUMAN	gamma sarcoglycan	97	Extracellular (Potential).				cytoskeleton organization|muscle organ development	cytoplasm|cytoskeleton|integral to membrane|sarcoglycan complex|sarcolemma					0		all_cancers(29;4.34e-23)|all_epithelial(30;4.4e-19)|all_lung(29;2.45e-18)|Lung SC(185;0.0228)|Breast(139;0.188)		all cancers(112;0.00255)|Epithelial(112;0.0129)|OV - Ovarian serous cystadenocarcinoma(117;0.0365)|Lung(94;0.205)		GAAATACACTCCAGAGTGGTA	0.338													33	91					0	0	0.000692331	0	0
CCNA1	8900	broad.mit.edu	37	13	37016767	37016767	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr13:37016767C>T	uc001uvr.3	+	9	1713	c.1363C>T	c.(1363-1365)CTC>TTC	p.L455F	CCNA1_uc010teo.1_Missense_Mutation_p.L411F|CCNA1_uc010abq.2_Missense_Mutation_p.L411F|CCNA1_uc010abp.2_Missense_Mutation_p.L411F|CCNA1_uc001uvs.3_Missense_Mutation_p.L454F|CCNA1_uc010abr.2_RNA	NM_003914	NP_003905	P78396	CCNA1_HUMAN	cyclin A1 isoform a	455					cell division|G2/M transition of mitotic cell cycle|male meiosis I|mitosis|regulation of cyclin-dependent protein kinase activity|regulation of transcription involved in G1/S phase of mitotic cell cycle|spermatogenesis	cytosol|microtubule cytoskeleton|nucleoplasm	protein kinase binding			lung(2)|skin(2)|ovary(1)	5		Breast(139;0.014)|Lung SC(185;0.0548)|Prostate(109;0.174)	KIRC - Kidney renal clear cell carcinoma(5;0.119)|Kidney(79;0.169)	all cancers(112;1.91e-07)|Epithelial(112;1.22e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00623)|BRCA - Breast invasive adenocarcinoma(63;0.0119)|GBM - Glioblastoma multiforme(144;0.0242)		GTGTGTGTCCCTCATGGAGCC	0.443													11	35					0	0	0.00244969	0	0
C13orf36	400120	broad.mit.edu	37	13	37269532	37269532	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr13:37269532C>T	uc001uvt.3	+	2	763	c.317C>T	c.(316-318)TCA>TTA	p.S106L		NM_203451	NP_982276	A2A2V5	CM036_HUMAN	hypothetical protein LOC400120	106						integral to membrane				skin(1)	1						TCAAACCTTTCATCCTGAGGA	0.473													11	34					0	0	0.000978159	0	0
FREM2	341640	broad.mit.edu	37	13	39438468	39438468	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr13:39438468C>G	uc001uwv.2	+	16	8017	c.7708C>G	c.(7708-7710)CCT>GCT	p.P2570A	FREM2_uc001uww.2_Missense_Mutation_p.P656A	NM_207361	NP_997244	Q5SZK8	FREM2_HUMAN	FRAS1-related extracellular matrix protein 2	2570	Extracellular (Potential).				cell communication|homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(7)|pancreas(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	11		Lung NSC(96;1.04e-07)|Prostate(109;0.00384)|Breast(139;0.00396)|Lung SC(185;0.0565)|Hepatocellular(188;0.114)		all cancers(112;3.32e-07)|Epithelial(112;1.66e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00154)|BRCA - Breast invasive adenocarcinoma(63;0.00631)|GBM - Glioblastoma multiforme(144;0.0312)		CACCCTCAGCCCTGATGGCAC	0.443													16	38					0	0	0.000566183	0	0
KLHL1	57626	broad.mit.edu	37	13	70549852	70549852	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr13:70549852G>A	uc001vip.2	-	2	1374	c.580C>T	c.(580-582)CAT>TAT	p.H194Y	KLHL1_uc010thm.1_Intron	NM_020866	NP_065917	Q9NR64	KLHL1_HUMAN	kelch-like 1 protein	194					actin cytoskeleton organization	cytoplasm|cytoskeleton	actin binding				0		Breast(118;0.000162)		COAD - Colon adenocarcinoma(199;0.000193)|GBM - Glioblastoma multiforme(99;0.000211)		TGCTCAGCATGATGAACAGCT	0.398													23	37					0	0	0.000586117	0	0
DACH1	1602	broad.mit.edu	37	13	72063265	72063265	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr13:72063265G>A	uc010thn.1	-	8	2009	c.1586C>T	c.(1585-1587)TCT>TTT	p.S529F	DACH1_uc010tho.1_Missense_Mutation_p.S381F|DACH1_uc010thp.1_Missense_Mutation_p.S327F	NM_080759	NP_542937	Q9UI36	DACH1_HUMAN	dachshund homolog 1 isoform a	581					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus	DNA binding|nucleotide binding|protein binding			breast(1)	1		Acute lymphoblastic leukemia(28;0.0503)|Breast(118;0.198)		GBM - Glioblastoma multiforme(99;0.00032)		GGTTGGTGTAGAAAGCGGGGT	0.443													72	121					0	0	0.000781405	0	0
POU4F1	5457	broad.mit.edu	37	13	79176586	79176586	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr13:79176586G>A	uc001vkv.2	-	2	458	c.224C>T	c.(223-225)CCT>CTT	p.P75L	uc001vku.1_Intron	NM_006237	NP_006228	Q01851	PO4F1_HUMAN	POU domain, class 4, transcription factor 1	75					axonogenesis|regulation of transcription from RNA polymerase II promoter|synapse assembly	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		Acute lymphoblastic leukemia(28;0.0279)|Breast(118;0.0848)		GBM - Glioblastoma multiforme(99;0.129)		CGGCTTGAAAGGATGGCTCTT	0.587													3	10					0	0	0.00024832	0	0
GPC5	2262	broad.mit.edu	37	13	92797119	92797119	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr13:92797119G>A	uc010tif.1	+	7	1804	c.1438G>A	c.(1438-1440)GAA>AAA	p.E480K		NM_004466	NP_004457	P78333	GPC5_HUMAN	glypican 5 precursor	480						anchored to membrane|extracellular space|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding			ovary(2)|skin(2)|upper_aerodigestive_tract(1)	5	all_cancers(3;1.43e-07)|all_neural(89;0.0804)|Medulloblastoma(90;0.163)	Lung NSC(4;0.00454)				TGACAAGTGGGAACTTCTTCA	0.428													8	28					0	0	0.000157383	0	0
SLC15A1	6564	broad.mit.edu	37	13	99337031	99337031	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr13:99337031C>T	uc001vno.2	-	23	2151	c.2074G>A	c.(2074-2076)GAA>AAA	p.E692K		NM_005073	NP_005064	P46059	S15A1_HUMAN	solute carrier family 15 (oligopeptide	692	Cytoplasmic (Potential).				digestion|protein transport	integral to plasma membrane|membrane fraction	peptide:hydrogen symporter activity			ovary(1)	1	all_neural(89;0.101)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)				Cefadroxil(DB01140)|Ceftibuten(DB01415)|Cyclacillin(DB01000)	TTACTCTTTTCCAGTCTGTTT	0.468													22	62					0	0	0.00047179	0	0
DOCK9	23348	broad.mit.edu	37	13	99567641	99567641	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr13:99567641G>A	uc001vnt.2	-	8	892	c.837C>T	c.(835-837)ATC>ATT	p.I279I	DOCK9_uc001vnw.2_Silent_p.I278I|DOCK9_uc001vnv.1_RNA|DOCK9_uc010tir.1_Silent_p.I279I|DOCK9_uc010tis.1_Silent_p.I278I|DOCK9_uc010tit.1_Silent_p.I279I|DOCK9_uc010afu.1_Silent_p.I94I	NM_015296	NP_056111	Q9BZ29	DOCK9_HUMAN	dedicator of cytokinesis 9 isoform a	279	PH.				blood coagulation	cytosol|endomembrane system|membrane	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			central_nervous_system(1)	1	all_neural(89;0.101)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)					TGAGCTGGAGGATCTTATTTA	0.448													19	42					0	0	0.00188189	0	0
Unknown	0	broad.mit.edu	37	14	19857036	19857036	+	RNA	SNP	A	G	G			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr14:19857036A>G	uc001vvq.1	-	5		c.494T>C								Homo sapiens cDNA FLJ12852 fis, clone NT2RP2003445.																		CTGGATAATAAAGTTCATCTC	0.373													4	158					0	0	0.00024832	0	0
OR4M1	441670	broad.mit.edu	37	14	20248805	20248805	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr14:20248805G>A	uc010tku.1	+	1	324	c.324G>A	c.(322-324)GGG>GGA	p.G108G		NM_001005500	NP_001005500	Q8NGD0	OR4M1_HUMAN	olfactory receptor, family 4, subfamily M,	108	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		ACTTTGTTGGGGCTTCGGAGA	0.478													22	85					0	0	0.00229938	0	0
MYH6	4624	broad.mit.edu	37	14	23863420	23863420	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr14:23863420C>T	uc001wjv.2	-	21	2609	c.2542G>A	c.(2542-2544)GAG>AAG	p.E848K		NM_002471	NP_002462	P13533	MYH6_HUMAN	myosin heavy chain 6	848	Potential.				adult heart development|atrial cardiac muscle tissue morphogenesis|cardiac muscle fiber development|in utero embryonic development|muscle filament sliding|regulation of ATPase activity|regulation of blood pressure|regulation of heart rate|regulation of the force of heart contraction|sarcomere organization|striated muscle contraction|ventricular cardiac muscle tissue morphogenesis|visceral muscle development	cytosol|focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|protein kinase binding|structural constituent of muscle			pancreas(2)|ovary(1)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00764)|READ - Rectum adenocarcinoma(4;0.0289)|Colorectal(4;0.0441)		ATCTCCTTCTCCGTCTCTGCG	0.562													38	75					0	0	0.00148497	0	0
AP1G2	8906	broad.mit.edu	37	14	24034858	24034858	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr14:24034858G>A	uc001wkl.2	-	7	1035	c.698C>T	c.(697-699)TCC>TTC	p.S233F	AP1G2_uc001wkj.2_5'UTR|AP1G2_uc001wkk.3_Missense_Mutation_p.S161F|AP1G2_uc001wkn.2_5'UTR|uc001wko.1_RNA|AP1G2_uc001wkp.1_5'Flank|AP1G2_uc010tnp.1_Missense_Mutation_p.S233F|AP1G2_uc010aks.2_Missense_Mutation_p.S161F|AP1G2_uc010akt.2_Missense_Mutation_p.S161F|AP1G2_uc010tnq.1_RNA	NM_003917	NP_003908	O75843	AP1G2_HUMAN	adaptor-related protein complex 1, gamma 2	233					interspecies interaction between organisms|intracellular protein transport|vesicle-mediated transport	AP-1 adaptor complex|endosome membrane	protein binding|protein transporter activity			ovary(1)	1	all_cancers(95;0.000251)			GBM - Glioblastoma multiforme(265;0.00672)		GTGTTCTGTGGAGTATCCCAT	0.552													17	24					0	0	0.00152264	0	0
PCK2	5106	broad.mit.edu	37	14	24573072	24573072	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr14:24573072C>T	uc001wlt.2	+	10	1954	c.1822C>T	c.(1822-1824)CGT>TGT	p.R608C	NRL_uc001wlq.2_Intron|PCK2_uc001wlr.1_Missense_Mutation_p.S509L|PCK2_uc010tnw.1_Missense_Mutation_p.R474C|PCK2_uc010tnx.1_Missense_Mutation_p.R474C|PCK2_uc001wlu.3_Missense_Mutation_p.R442C	NM_004563	NP_004554	Q16822	PCKGM_HUMAN	mitochondrial phosphoenolpyruvate carboxykinase	608					gluconeogenesis	mitochondrial matrix	GTP binding|metal ion binding|phosphoenolpyruvate carboxykinase (GTP) activity			ovary(1)	1				GBM - Glioblastoma multiforme(265;0.0184)		ACAGGAGGTTCGTGACATTCG	0.562													15	79					0	0	0.00244969	0	0
FITM1	161247	broad.mit.edu	37	14	24601790	24601790	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr14:24601790C>T	uc001wmf.2	+	2	735	c.637C>T	c.(637-639)CCT>TCT	p.P213S		NM_203402	NP_981947	A5D6W6	FITM1_HUMAN	fat-inducing transcript 1	213	Cytoplasmic (Potential).				lipid particle organization|positive regulation of sequestering of triglyceride	endoplasmic reticulum membrane|integral to membrane					0						CCATGGGCTTCCTGCCGGCGC	0.592													34	40					0	0	0.000692331	0	0
NOVA1	4857	broad.mit.edu	37	14	26949327	26949327	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr14:26949327C>T	uc001wpy.2	-	3	621	c.303G>A	c.(301-303)TTG>TTA	p.L101L	NOVA1_uc001wpz.2_Silent_p.L101L|NOVA1_uc001wqa.2_5'UTR|NOVA1_uc001wqb.2_Silent_p.L101L	NM_002515	NP_002506	P51513	NOVA1_HUMAN	neuro-oncological ventral antigen 1 isoform 1	104	KH 1.				locomotory behavior|RNA splicing|synaptic transmission	nucleus	RNA binding			skin(2)|upper_aerodigestive_tract(1)|breast(1)|liver(1)	5				GBM - Glioblastoma multiforme(265;0.0135)		TTCCCTGGATCAAGCACACTC	0.378													10	26					0	0	0.000978159	0	0
HEATR5A	25938	broad.mit.edu	37	14	31828259	31828259	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr14:31828259G>A	uc001wrf.3	-	9	1274	c.1197C>T	c.(1195-1197)AAC>AAT	p.N399N	HEATR5A_uc010ami.2_Silent_p.N297N|HEATR5A_uc001wrg.1_Silent_p.N281N|HEATR5A_uc010tpk.1_Silent_p.N692N	NM_015473	NP_056288	Q86XA9	HTR5A_HUMAN	HEAT repeat containing 5A	686							binding			ovary(1)	1	Hepatocellular(127;0.0877)|Breast(36;0.137)		LUAD - Lung adenocarcinoma(48;0.00292)|Lung(238;0.0164)|BRCA - Breast invasive adenocarcinoma(188;0.0797)|STAD - Stomach adenocarcinoma(7;0.173)	GBM - Glioblastoma multiforme(265;0.0059)		TAGCACAGAGGTTTCCTGTTG	0.448													11	44					0	0	0.000978159	0	0
EGLN3	112399	broad.mit.edu	37	14	34419787	34419787	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr14:34419787C>T	uc001wsa.3	-	1	498	c.172G>A	c.(172-174)GAC>AAC	p.D58N	EGLN3_uc001wry.2_Intron|EGLN3_uc001wrz.2_Missense_Mutation_p.D58N|EGLN3_uc001wsb.1_Missense_Mutation_p.D58N	NM_022073	NP_071356	Q9H6Z9	EGLN3_HUMAN	egl nine homolog 3	58					apoptosis	cytoplasm|nucleus	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding				0	Breast(36;0.0303)|Hepatocellular(127;0.133)		LUAD - Lung adenocarcinoma(48;0.000246)|Lung(238;0.000959)|Epithelial(34;0.155)	GBM - Glioblastoma multiforme(112;0.0118)	Vitamin C(DB00126)	AGCTGGCCGTCCCGCAGGGCC	0.716													13	15					0	0	0.00185496	0	0
MIA2	117153	broad.mit.edu	37	14	39716233	39716233	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr14:39716233C>T	uc001wux.2	+	4	649	c.455C>T	c.(454-456)TCT>TTT	p.S152F	MIA2_uc010amy.1_Missense_Mutation_p.S83F	NM_054024	NP_473365	Q96PC5	MIA2_HUMAN	melanoma inhibitory activity 2	152						extracellular region				ovary(1)|breast(1)	2	Hepatocellular(127;0.213)		LUAD - Lung adenocarcinoma(48;0.000565)|Lung(238;0.000711)	GBM - Glioblastoma multiforme(112;0.0216)		GATGAAAAATCTAGTATATAT	0.313													10	20					0	0	0.00136819	0	0
SOS2	6655	broad.mit.edu	37	14	50655284	50655284	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr14:50655284C>T	uc001wxs.3	-	5	743	c.645G>A	c.(643-645)CGG>CGA	p.R215R	SOS2_uc010tql.1_Silent_p.R215R	NM_006939	NP_008870	Q07890	SOS2_HUMAN	son of sevenless homolog 2	215	DH.				apoptosis|axon guidance|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	DNA binding|protein binding|Rho guanyl-nucleotide exchange factor activity			ovary(2)	2	all_epithelial(31;0.000822)|Breast(41;0.0065)					TATTTAATTCCCGTAGATACT	0.353													17	31					0	0	0.00074312	0	0
WDHD1	11169	broad.mit.edu	37	14	55434105	55434105	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr14:55434105G>C	uc001xbm.1	-	17	2149	c.2071C>G	c.(2071-2073)CCT>GCT	p.P691A	WDHD1_uc010aom.1_Missense_Mutation_p.P208A|WDHD1_uc001xbn.1_Missense_Mutation_p.P568A	NM_007086	NP_009017	O75717	WDHD1_HUMAN	WD repeat and HMG-box DNA binding protein 1	691						cytoplasm|nucleoplasm	DNA binding			skin(1)	1						CCTTTACAAGGAATGCACCTG	0.348													6	53					0	0	0.00198382	0	0
PRKCH	5583	broad.mit.edu	37	14	61920070	61920070	+	Missense_Mutation	SNP	C	T	T	rs141322283		TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr14:61920070C>T	uc001xfn.2	+	7	1264	c.959C>T	c.(958-960)TCG>TTG	p.S320L	PRKCH_uc010tsa.1_Missense_Mutation_p.S159L	NM_006255	NP_006246	P24723	KPCL_HUMAN	protein kinase C, eta	320					intracellular signal transduction|platelet activation	cytosol|plasma membrane	ATP binding|enzyme binding|metal ion binding|protein kinase C activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|lung(1)|large_intestine(1)|skin(1)	6				OV - Ovarian serous cystadenocarcinoma(108;0.045)|BRCA - Breast invasive adenocarcinoma(234;0.0906)|KIRC - Kidney renal clear cell carcinoma(182;0.182)		TCTCCAACCTCGGTGAGACTT	0.483													6	26					0	0	0.00198382	0	0
PRKCH	5583	broad.mit.edu	37	14	61924337	61924337	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr14:61924337C>T	uc001xfn.2	+	9	1523	c.1218C>T	c.(1216-1218)ATC>ATT	p.I406I	PRKCH_uc010tsa.1_Silent_p.I245I	NM_006255	NP_006246	P24723	KPCL_HUMAN	protein kinase C, eta	406	Protein kinase.				intracellular signal transduction|platelet activation	cytosol|plasma membrane	ATP binding|enzyme binding|metal ion binding|protein kinase C activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|lung(1)|large_intestine(1)|skin(1)	6				OV - Ovarian serous cystadenocarcinoma(108;0.045)|BRCA - Breast invasive adenocarcinoma(234;0.0906)|KIRC - Kidney renal clear cell carcinoma(182;0.182)		AGAAAAGGATCCTGTCTCTGG	0.488													72	99					0	0	0.000781405	0	0
HIF1A	3091	broad.mit.edu	37	14	62200959	62200959	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr14:62200959G>A	uc001xfq.2	+	8	1388	c.984G>A	c.(982-984)AAG>AAA	p.K328K	HIF1A_uc001xfr.2_Silent_p.K328K|HIF1A_uc001xfs.2_Silent_p.K329K	NM_001530	NP_001521	Q16665	HIF1A_HUMAN	hypoxia-inducible factor 1, alpha subunit	328	Interaction with TSGA10 (By similarity).|PAC.				cellular response to hypoxia|collagen metabolic process|connective tissue replacement involved in inflammatory response wound healing|elastin metabolic process|epithelial to mesenchymal transition|oxygen homeostasis|positive regulation of chemokine production|positive regulation of epithelial cell migration|positive regulation of hormone biosynthetic process|positive regulation of nitric-oxide synthase activity|positive regulation of transcription from RNA polymerase II promoter|positive regulation vascular endothelial growth factor production|regulation of transcription from RNA polymerase II promoter in response to oxidative stress|regulation of transforming growth factor-beta2 production	cytoplasm|nucleolus|transcription factor complex	histone acetyltransferase binding|Hsp90 protein binding|protein heterodimerization activity|sequence-specific enhancer binding RNA polymerase II transcription factor activity|signal transducer activity|transcription factor binding|transcription regulatory region DNA binding			kidney(3)|lung(1)	4				OV - Ovarian serous cystadenocarcinoma(108;1.62e-09)|BRCA - Breast invasive adenocarcinoma(234;0.189)		ATAACACCAAGAATTCTCAAC	0.373													10	28					0	0	0.000978159	0	0
SPTB	6710	broad.mit.edu	37	14	65253286	65253286	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr14:65253286C>T	uc001xht.2	-	15	3451	c.3397G>A	c.(3397-3399)GAC>AAC	p.D1133N	SPTB_uc001xhr.2_Missense_Mutation_p.D1133N|SPTB_uc001xhs.2_Missense_Mutation_p.D1133N|SPTB_uc001xhu.2_Missense_Mutation_p.D1133N	NM_000347	NP_000338	P11277	SPTB1_HUMAN	spectrin beta isoform b	1133	Spectrin 8.				actin filament capping|axon guidance	cell surface|cytosol|intrinsic to internal side of plasma membrane|protein complex|spectrin|spectrin-associated cytoskeleton	actin filament binding|structural constituent of cytoskeleton			ovary(7)|skin(2)|lung(1)|central_nervous_system(1)	11		all_lung(585;4.15e-09)		all cancers(60;4.33e-34)|OV - Ovarian serous cystadenocarcinoma(108;8.32e-20)|BRCA - Breast invasive adenocarcinoma(234;0.0628)		TACTCTGGGTCCGTCTGGCCT	0.602													4	30					0	0	0.00024832	0	0
SLC8A3	6547	broad.mit.edu	37	14	70633434	70633434	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr14:70633434A>G	uc001xly.2	-	2	2460	c.1706T>C	c.(1705-1707)GTA>GCA	p.V569A	SLC8A3_uc001xlw.2_Missense_Mutation_p.V569A|SLC8A3_uc001xlx.2_Missense_Mutation_p.V569A|SLC8A3_uc001xlz.2_Missense_Mutation_p.V569A|SLC8A3_uc010ara.2_RNA	NM_183002	NP_892114	P57103	NAC3_HUMAN	solute carrier family 8 (sodium/calcium	569	Calx-beta 2.|Cytoplasmic (Potential).				cell communication|platelet activation	integral to membrane|plasma membrane	calcium:sodium antiporter activity|calmodulin binding			skin(3)|ovary(2)|breast(2)	7				BRCA - Breast invasive adenocarcinoma(234;0.0079)|all cancers(60;0.0102)|OV - Ovarian serous cystadenocarcinoma(108;0.0555)		TGTCCCTTCTACTGTCCTAAA	0.473													19	22					0	0	0.00152264	0	0
SLC8A3	6547	broad.mit.edu	37	14	70634243	70634243	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr14:70634243C>T	uc001xly.2	-	2	1651	c.897G>A	c.(895-897)GGG>GGA	p.G299G	SLC8A3_uc001xlw.2_Silent_p.G299G|SLC8A3_uc001xlx.2_Silent_p.G299G|SLC8A3_uc001xlz.2_Silent_p.G299G|SLC8A3_uc010ara.2_RNA	NM_183002	NP_892114	P57103	NAC3_HUMAN	solute carrier family 8 (sodium/calcium	299	Cytoplasmic (Potential).				cell communication|platelet activation	integral to membrane|plasma membrane	calcium:sodium antiporter activity|calmodulin binding			skin(3)|ovary(2)|breast(2)	7				BRCA - Breast invasive adenocarcinoma(234;0.0079)|all cancers(60;0.0102)|OV - Ovarian serous cystadenocarcinoma(108;0.0555)		GCACCAGGTTCCCATCTAGAA	0.488													9	16					0	0	0.00136819	0	0
ADAM21	8747	broad.mit.edu	37	14	70924562	70924562	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr14:70924562G>A	uc001xmd.2	+	1	346	c.346G>A	c.(346-348)GAG>AAG	p.E116K		NM_003813	NP_003804	Q9UKJ8	ADA21_HUMAN	ADAM metallopeptidase domain 21 preproprotein	116					proteolysis|single fertilization	integral to membrane	metalloendopeptidase activity|zinc ion binding			pancreas(1)|skin(1)	2				all cancers(60;0.00326)|BRCA - Breast invasive adenocarcinoma(234;0.00646)|OV - Ovarian serous cystadenocarcinoma(108;0.0401)		TGGTTACGTGGAGGCAGCCCC	0.478													25	72					0	0	0.00178596	0	0
YLPM1	56252	broad.mit.edu	37	14	75276309	75276309	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr14:75276309G>A	uc001xqj.3	+	7	4872	c.4748G>A	c.(4747-4749)TGG>TAG	p.W1583*	YLPM1_uc001xql.3_RNA|YLPM1_uc001xqm.1_Nonsense_Mutation_p.W66*	NM_019589	NP_062535	P49750	YLPM1_HUMAN	YLP motif containing 1	1388					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear speck				ovary(2)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(43;0.238)	BRCA - Breast invasive adenocarcinoma(234;0.00162)		TATGGGCTCTGGGATACAAAT	0.363													7	16					0	0	0.000157383	0	0
ANGEL1	23357	broad.mit.edu	37	14	77255678	77255678	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr14:77255678G>A	uc001xsv.2	-	10	2019	c.1906C>T	c.(1906-1908)CTC>TTC	p.L636F	uc001xsu.1_5'Flank|ANGEL1_uc010tvf.1_Intron	NM_015305	NP_056120	Q9UNK9	ANGE1_HUMAN	angel homolog 1	636										ovary(2)|central_nervous_system(1)|skin(1)	4			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0285)		TCTTCAGAGAGAAGGGAGAGA	0.562													35	61					0	0	0.00170553	0	0
KIAA1737	85457	broad.mit.edu	37	14	77580457	77580457	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr14:77580457C>T	uc001xtd.2	+	4	1175	c.996C>T	c.(994-996)ATC>ATT	p.I332I	KIAA1737_uc001xtc.1_Silent_p.I234I	NM_033426	NP_219494	Q9C0C6	K1737_HUMAN	KIAA1737 protein	332											0			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0284)		TGCTGGAGATCACTTTGAAAA	0.463													25	32					0	0	0.00278032	0	0
TMED8	283578	broad.mit.edu	37	14	77812698	77812698	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr14:77812698G>A	uc001xto.1	-	3	321	c.321C>T	c.(319-321)CTC>CTT	p.L107L	TMED8_uc010ast.1_RNA|TMED8_uc001xtn.1_5'Flank	NM_213601	NP_998766	Q6PL24	TMED8_HUMAN	transmembrane emp24 protein transport domain	107					transport	integral to membrane					0			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0281)		CTACCTCATTGAGGACCTGGG	0.532													16	26					0	0	0.000566183	0	0
NRXN3	9369	broad.mit.edu	37	14	80328034	80328034	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr14:80328034G>A	uc001xun.2	+	17	3404	c.2913G>A	c.(2911-2913)CGG>CGA	p.R971R	NRXN3_uc001xum.1_RNA|NRXN3_uc001xup.2_RNA|NRXN3_uc001xuq.2_Silent_p.R547R|NRXN3_uc010asw.2_Silent_p.R369R|NRXN3_uc001xur.3_Silent_p.R342R	NM_004796	NP_004787	Q9Y4C0	NRX3A_HUMAN	neurexin 3 isoform 1 precursor	1553	Extracellular (Potential).				axon guidance|cell adhesion	integral to plasma membrane	metal ion binding|receptor activity			ovary(3)|upper_aerodigestive_tract(2)|pancreas(2)|central_nervous_system(1)|breast(1)|skin(1)	10		Renal(4;0.00876)		BRCA - Breast invasive adenocarcinoma(234;0.00544)|Kidney(3;0.029)|KIRC - Kidney renal clear cell carcinoma(182;0.223)		GAATCAGACGGGTTCCGGGGG	0.587													17	27					0	0	0.000566183	0	0
STON2	85439	broad.mit.edu	37	14	81744156	81744156	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr14:81744156C>T	uc010tvu.1	-	4	1700	c.1499G>A	c.(1498-1500)CGG>CAG	p.R500Q	STON2_uc001xvk.1_Missense_Mutation_p.R500Q|STON2_uc010tvt.1_Missense_Mutation_p.R297Q	NM_033104	NP_149095	Q8WXE9	STON2_HUMAN	stonin 2	500	SHD.				endocytosis|intracellular protein transport|regulation of endocytosis	clathrin adaptor complex|nucleolus	protein binding			skin(3)|pancreas(2)	5				BRCA - Breast invasive adenocarcinoma(234;0.0348)		ACGGTCTATCCGCAAGCTGTG	0.488													43	66					0	0	0.00222228	0	0
FLRT2	23768	broad.mit.edu	37	14	86087949	86087949	+	Missense_Mutation	SNP	T	G	G			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr14:86087949T>G	uc001xvr.2	+	2	858	c.91T>G	c.(91-93)TCC>GCC	p.S31A	FLRT2_uc010atd.2_Missense_Mutation_p.S31A	NM_013231	NP_037363	O43155	FLRT2_HUMAN	fibronectin leucine rich transmembrane protein 2	31					cell adhesion	integral to plasma membrane|proteinaceous extracellular matrix	protein binding, bridging|receptor signaling protein activity			ovary(3)|haematopoietic_and_lymphoid_tissue(1)	4				BRCA - Breast invasive adenocarcinoma(234;0.0319)		CTCACAGGTGTCCAAACTCCT	0.542													37	63					0	0	0.00128727	0	0
EML5	161436	broad.mit.edu	37	14	89154729	89154729	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr14:89154729C>T	uc001xxg.2	-	19	2814	c.2628G>A	c.(2626-2628)GAG>GAA	p.E876E	EML5_uc001xxh.1_Intron	NM_183387	NP_899243	Q05BV3	EMAL5_HUMAN	echinoderm microtubule associated protein like	876	WD 14.					cytoplasm|microtubule				ovary(3)	3						AAAAAGCCATCTCTTCAGTCC	0.443													83	150					0	0	0.000781405	0	0
PSMC1	5700	broad.mit.edu	37	14	90730407	90730407	+	Missense_Mutation	SNP	T	G	G			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr14:90730407T>G	uc001xyf.2	+	6	536	c.488T>G	c.(487-489)CTG>CGG	p.L163R	PSMC1_uc001xyg.2_Missense_Mutation_p.L90R|PSMC1_uc001xyh.2_Missense_Mutation_p.L90R|PSMC1_uc010twh.1_Missense_Mutation_p.L90R	NM_002802	NP_002793	P62191	PRS4_HUMAN	proteasome 26S ATPase subunit 1	163					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	cytoplasm|nucleus|proteasome complex	ATP binding|ATPase activity|protein binding				0		all_cancers(154;0.142)		COAD - Colon adenocarcinoma(157;0.21)		ATAGGGGTGCTGATGGATGAC	0.498													17	21					0	0	0.00152264	0	0
CATSPERB	79820	broad.mit.edu	37	14	92047361	92047361	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr14:92047361C>T	uc001xzs.1	-	27	3363	c.3223G>A	c.(3223-3225)GCA>ACA	p.A1075T	CATSPERB_uc010aub.1_Missense_Mutation_p.A597T	NM_024764	NP_079040	Q9H7T0	CTSRB_HUMAN	cation channel, sperm-associated, beta	1075	Helical; (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				breast(2)|skin(2)|ovary(1)	5		all_cancers(154;0.0663)|all_epithelial(191;0.236)				AACATAAATGCTATAAAAATT	0.438													13	48					0	0	0.00136819	0	0
KIAA1409	57578	broad.mit.edu	37	14	93990337	93990337	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr14:93990337C>T	uc001ybv.1	+	5	464	c.381C>T	c.(379-381)ATC>ATT	p.I127I	KIAA1409_uc001ybs.1_Silent_p.I127I|KIAA1409_uc001ybu.1_Silent_p.I65I	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	304						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		GGAATCCCATCCACTGCCAGC	0.363													17	44					0	0	0.00229938	0	0
KIAA1409	57578	broad.mit.edu	37	14	94008890	94008890	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr14:94008890C>T	uc001ybv.1	+	11	1155	c.1072C>T	c.(1072-1074)CAC>TAC	p.H358Y	KIAA1409_uc001ybs.1_Missense_Mutation_p.H358Y	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	535						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		TCAGTGGTTTCACTCCACTGC	0.502													21	41					0	0	0.00152264	0	0
C14orf68	283600	broad.mit.edu	37	14	100795870	100795870	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr14:100795870G>C	uc001yhc.2	+	6	888	c.815G>C	c.(814-816)CGG>CCG	p.R272P	C14orf68_uc001yhd.2_Missense_Mutation_p.R126P	NM_207117	NP_997000	Q6Q0C1	S2547_HUMAN	chromosome 14 open reading frame 68	272	Solcar 3.				transmembrane transport	integral to membrane|mitochondrial inner membrane	binding				0		Melanoma(154;0.152)				GAGGGACCCCGGGTCCTTTTC	0.632													3	94					0	0	6.4e-05	0	0
PPP1R13B	23368	broad.mit.edu	37	14	104201504	104201504	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr14:104201504C>T	uc001yof.1	-	17	3543	c.3260G>A	c.(3259-3261)CGA>CAA	p.R1087Q	PPP1R13B_uc010awv.1_RNA	NM_015316	NP_056131	Q96KQ4	ASPP1_HUMAN	apoptosis-stimulating protein of p53, 1	1087					apoptosis|induction of apoptosis|negative regulation of cell cycle	cytoplasm|nucleus|plasma membrane	protein binding			ovary(1)	1		all_cancers(154;0.173)|all_epithelial(191;0.131)|Melanoma(154;0.155)				GGCGAGTGTTCGCTGTCGGGG	0.577													11	51					0	0	0.00136819	0	0
AHNAK2	113146	broad.mit.edu	37	14	105411544	105411545	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr14:105411544_105411545CC>TT	uc010axc.1	-	7	10363_10364	c.10243_10244GG>AA	c.(10243-10245)GGC>AAC	p.G3415N	AHNAK2_uc001ypx.2_Missense_Mutation_p.G3315N	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	3415						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			CAGCTTGGGGCCCTTGATGTCC	0.629													46	224					0	0	6.4e-05	0	0
ADAM6	8755	broad.mit.edu	37	14	106208508	106208508	+	RNA	SNP	T	C	C			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr14:106208508T>C	uc010tyt.1	-	3627		c.58706A>G			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_5'UTR|uc001ysf.2_5'UTR					Parts of antibodies, mostly variable regions.												0						GAGGGTGTCCTTGGGTTTTGG	0.617													25	84					0	0	0.000878237	0	0
ADAM6	8755	broad.mit.edu	37	14	106791087	106791087	+	RNA	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr14:106791087G>A	uc010tyt.1	-	386		c.14531C>T								Parts of antibodies, mostly variable regions.												0						ATTGTCTCTGGAGATGGTGAA	0.507													36	157					0	0	0.00111076	0	0
ADAM6	8755	broad.mit.edu	37	14	107199181	107199181	+	RNA	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr14:107199181G>A	uc010tyt.1	-	21		c.1517C>T								Parts of antibodies, mostly variable regions.												0						AGAGTCTCAGGGACCCTCCAG	0.607													47	68					0	0	0.000781405	0	0
Unknown	0	broad.mit.edu	37	15	20362839	20362839	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr15:20362839G>A	uc001yte.1	+	1	152	c.101G>A	c.(100-102)GGA>GAA	p.G34E						SubName: Full=Putative uncharacterized protein ENSP00000349734;																		AACAGCGAGGGAAATGTTGGA	0.498													9	25					0	0	0.000673444	0	0
Unknown	0	broad.mit.edu	37	15	20490560	20490560	+	RNA	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr15:20490560G>A	uc001ytf.1	+	4		c.540G>A								full-length cDNA clone CS0DI026YN18 of Placenta Cot 25-normalized of Homo sapiens (human).																		TTTTACAACAGAAGAAGCCTT	0.458													15	451					0	0	0.00074312	0	0
TUBGCP5	114791	broad.mit.edu	37	15	22853742	22853742	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr15:22853742C>T	uc001yur.3	+	12	1510	c.1380C>T	c.(1378-1380)CTC>CTT	p.L460L	TUBGCP5_uc001yuq.2_Silent_p.L460L|TUBGCP5_uc010axz.1_Silent_p.L47L	NM_052903	NP_443135	Q96RT8	GCP5_HUMAN	tubulin, gamma complex associated protein 5	460					G2/M transition of mitotic cell cycle|microtubule nucleation	centrosome|cytosol|gamma-tubulin ring complex|microtubule|spindle pole	microtubule binding			skin(1)	1		all_cancers(20;2.26e-25)|all_epithelial(15;2.1e-22)|Lung NSC(15;3.36e-17)|all_lung(15;1.04e-16)|Breast(32;0.000776)|Colorectal(260;0.0488)		all cancers(64;2.86e-06)|Epithelial(43;2.63e-05)|BRCA - Breast invasive adenocarcinoma(123;0.000949)		AGGTCTCCCTCCTTTTCTCTC	0.537													7	13					0	0	0.00198382	0	0
SNORD115-13	100033450	broad.mit.edu	37	15	25438365	25438365	+	RNA	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr15:25438365G>A	uc001yzf.1	+	3		c.243G>A			SNORD115-13_uc001yzh.2_5'Flank|SNORD115-14_uc001yzj.1_5'Flank					Homo sapiens clone Rt-11 SNURF-SNRPN mRNA, downstream untranslated exons, alternatively spliced.												0						CTGGTGCACTGAAGATTGGGC	0.602													17	40					0	0	0.000566183	0	0
BUB1B	701	broad.mit.edu	37	15	40476063	40476063	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr15:40476063C>T	uc001zkx.3	+	6	942	c.730C>T	c.(730-732)CGT>TGT	p.R244C	BUB1B_uc010ucl.1_Missense_Mutation_p.R107C	NM_001211	NP_001202	O60566	BUB1B_HUMAN	budding uninhibited by benzimidazoles 1 beta	244					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|cell division|cell proliferation|mitotic cell cycle spindle assembly checkpoint|mitotic prometaphase|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|phosphatidylinositol-mediated signaling|protein localization to kinetochore|spindle organization	anaphase-promoting complex|condensed chromosome outer kinetochore|cytosol|microtubule organizing center|perinuclear region of cytoplasm|spindle midzone	ATP binding|protein binding|protein serine/threonine kinase activity			stomach(2)|ovary(1)|kidney(1)	4		all_cancers(109;1.12e-18)|all_epithelial(112;1.61e-15)|Lung NSC(122;5.63e-11)|all_lung(180;1.4e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;1.83e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0556)		TCCAATCATCCGTGTAGGAGG	0.378			Mis|N|F|S			rhabdomyosarcoma			Mosaic_Variegated_Aneuploidy_Syndrome				12	24					0	0	0.00185496	0	0
CASC5	57082	broad.mit.edu	37	15	40943753	40943754	+	Missense_Mutation	DNP	GC	AG	AG			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr15:40943753_40943754GC>AG	uc010bbs.1	+	21	6536_6537	c.6375_6376GC>AG	c.(6373-6378)GAGCTA>GAAGTA	p.L2126V	CASC5_uc010bbt.1_Missense_Mutation_p.L2100V	NM_170589	NP_733468	Q8NG31	CASC5_HUMAN	cancer susceptibility candidate 5 isoform 1	2126	Necessary for kinetochore localization and for interaction with NSL1 and DSN1.|Potential.				acrosome assembly|attachment of spindle microtubules to kinetochore|cell division|CenH3-containing nucleosome assembly at centromere|mitotic prometaphase|spindle assembly checkpoint	acrosomal vesicle|condensed chromosome kinetochore|cytosol|nucleoplasm	protein binding			breast(3)|central_nervous_system(1)|skin(1)	5		all_cancers(109;2.03e-18)|all_epithelial(112;4.26e-15)|Lung NSC(122;1.12e-10)|all_lung(180;2.59e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.0946)		GBM - Glioblastoma multiforme(113;4.99e-05)|BRCA - Breast invasive adenocarcinoma(123;0.0861)|COAD - Colon adenocarcinoma(120;0.211)		GAACTGAAGAGCTACTGGATCA	0.361													4	22					0	0	6.4e-05	0	0
EXD1	161829	broad.mit.edu	37	15	41476729	41476729	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr15:41476729C>T	uc001znk.2	-	10	1136	c.945G>A	c.(943-945)AGG>AGA	p.R315R	EXD1_uc001znj.2_Silent_p.R113R|EXD1_uc010ucv.1_Silent_p.R373R	NM_152596	NP_689809	Q8NHP7	EXD1_HUMAN	exonuclease 3'-5' domain containing 1	315					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	intracellular	3'-5' exonuclease activity|nucleic acid binding			ovary(1)	1						CAGCTTTCTCCCTGCGCTGCT	0.458													31	61					0	0	0.001512	0	0
RPAP1	26015	broad.mit.edu	37	15	41814314	41814314	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr15:41814314G>A	uc001zod.2	-	20	3001	c.2877C>T	c.(2875-2877)CTC>CTT	p.L959L	RPAP1_uc001zoc.2_5'UTR	NM_015540	NP_056355	Q9BWH6	RPAP1_HUMAN	RNA polymerase II associated protein 1	959	Leu-rich.					nucleus	DNA binding|DNA-directed RNA polymerase activity			large_intestine(1)	1		all_cancers(109;6.59e-20)|all_epithelial(112;7.67e-17)|Lung NSC(122;5.34e-11)|all_lung(180;4.17e-10)|Melanoma(134;0.0179)|Ovarian(310;0.143)|Colorectal(260;0.173)		OV - Ovarian serous cystadenocarcinoma(18;2.84e-17)|GBM - Glioblastoma multiforme(113;1.68e-06)|Colorectal(105;0.0163)|BRCA - Breast invasive adenocarcinoma(123;0.117)		GGGCCAGAGCGAGTGCCAGGT	0.587													30	60					0	0	0.0024448	0	0
RPAP1	26015	broad.mit.edu	37	15	41819387	41819387	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr15:41819387T>C	uc001zod.2	-	13	1848	c.1724A>G	c.(1723-1725)CAT>CGT	p.H575R		NM_015540	NP_056355	Q9BWH6	RPAP1_HUMAN	RNA polymerase II associated protein 1	575						nucleus	DNA binding|DNA-directed RNA polymerase activity			large_intestine(1)	1		all_cancers(109;6.59e-20)|all_epithelial(112;7.67e-17)|Lung NSC(122;5.34e-11)|all_lung(180;4.17e-10)|Melanoma(134;0.0179)|Ovarian(310;0.143)|Colorectal(260;0.173)		OV - Ovarian serous cystadenocarcinoma(18;2.84e-17)|GBM - Glioblastoma multiforme(113;1.68e-06)|Colorectal(105;0.0163)|BRCA - Breast invasive adenocarcinoma(123;0.117)		TTCCAGGGAATGCCGGGCCAG	0.607													17	30					0	0	0.000958276	0	0
UBR1	197131	broad.mit.edu	37	15	43299340	43299340	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr15:43299340C>T	uc001zqq.2	-	30	3418	c.3352G>A	c.(3352-3354)GCC>ACC	p.A1118T		NM_174916	NP_777576	Q8IWV7	UBR1_HUMAN	ubiquitin protein ligase E3 component n-recognin	1118	RING-type; atypical.				cellular response to leucine|negative regulation of TOR signaling cascade	cytosol	leucine binding|zinc ion binding			lung(1)	1		all_cancers(109;4.32e-15)|all_epithelial(112;4.05e-13)|Lung NSC(122;1.75e-08)|all_lung(180;2e-07)|Melanoma(134;0.0179)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;4.08e-07)|COAD - Colon adenocarcinoma(120;0.185)|Colorectal(105;0.214)		TGGACACAGGCCGATAATACC	0.418													26	87					0	0	0.001512	0	0
GCOM1	145781	broad.mit.edu	37	15	57929917	57929917	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr15:57929917C>T	uc002aei.2	+	9	1077	c.958C>T	c.(958-960)CTC>TTC	p.L320F	GCOM1_uc002aej.2_Missense_Mutation_p.L320F|GCOM1_uc002aek.2_RNA|GCOM1_uc002ael.2_RNA|GCOM1_uc002aem.2_Missense_Mutation_p.L320F|GCOM1_uc002aeq.2_RNA|GCOM1_uc002aen.2_RNA|GCOM1_uc010bfy.2_RNA|GCOM1_uc002aeo.2_Missense_Mutation_p.L320F|GCOM1_uc002aep.2_RNA|GCOM1_uc010bfx.2_RNA	NM_001018100	NP_001018110	P0CAP1	GCOM1_HUMAN	GRINL1A upstream protein isoform 7	320	Potential.				intracellular signal transduction	extrinsic to internal side of plasma membrane|I band				ovary(1)	1						GCAACTTCAACTCCTAGAACA	0.373													4	17					0	0	0.00116845	0	0
LIPC	3990	broad.mit.edu	37	15	58855766	58855766	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr15:58855766G>A	uc010bga.1	+	10	1840	c.1232G>A	c.(1231-1233)GGC>GAC	p.G411D	LIPC_uc010bfz.1_Missense_Mutation_p.G411D|LIPC_uc002afa.1_Missense_Mutation_p.G411D|LIPC_uc010bgb.1_Missense_Mutation_p.G309D|LIPC_uc010ugy.1_Missense_Mutation_p.G350D	NM_000236	NP_000227	P11150	LIPC_HUMAN	lipase C precursor	411	PLAT.				cholesterol homeostasis|chylomicron remnant clearance|fatty acid biosynthetic process|high-density lipoprotein particle remodeling|intermediate-density lipoprotein particle remodeling|low-density lipoprotein particle remodeling|phosphatidylcholine catabolic process|triglyceride catabolic process|triglyceride homeostasis|very-low-density lipoprotein particle remodeling	high-density lipoprotein particle	apolipoprotein binding|heparin binding|low-density lipoprotein particle binding|phospholipase activity|triglyceride lipase activity			ovary(1)	1		Colorectal(260;0.215)		GBM - Glioblastoma multiforme(80;0.00213)|all cancers(107;0.00548)		GTGGATATCGGCGAGCTGATC	0.473													14	39					0	0	0.000422831	0	0
SLC24A1	9187	broad.mit.edu	37	15	65943235	65943235	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr15:65943235C>T	uc010ujf.1	+	7	3035	c.2748C>T	c.(2746-2748)CCC>CCT	p.P916P	SLC24A1_uc010ujd.1_Silent_p.P898P|SLC24A1_uc010uje.1_Silent_p.P898P|SLC24A1_uc010ujg.1_Silent_p.P916P|SLC24A1_uc010ujh.1_Silent_p.P898P|SLC24A1_uc010uji.1_Silent_p.P243P	NM_004727	NP_004718	O60721	NCKX1_HUMAN	solute carrier family 24	916	Helical; (Potential).				response to light intensity|visual perception	integral to plasma membrane|membrane fraction|outer membrane	calcium, potassium:sodium antiporter activity|protein binding|symporter activity				0						TCCTTCTGCCCATCGTGTTCC	0.498													12	58					0	0	0.00136819	0	0
MAP2K1	5604	broad.mit.edu	37	15	66729162	66729162	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr15:66729162C>T	uc010bhq.2	+	3	845	c.370C>T	c.(370-372)CCG>TCG	p.P124S	MAP2K1_uc010ujp.1_Missense_Mutation_p.P102S	NM_002755	NP_002746	Q02750	MP2K1_HUMAN	mitogen-activated protein kinase kinase 1	124	Protein kinase.				activation of MAPK activity|activation of MAPKK activity|axon guidance|cell cycle arrest|cellular senescence|epidermal growth factor receptor signaling pathway|innate immune response|insulin receptor signaling pathway|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of cell proliferation|nerve growth factor receptor signaling pathway|Ras protein signal transduction|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|plasma membrane	ATP binding|MAP kinase kinase activity|protein serine/threonine kinase activity|protein tyrosine kinase activity				0						GTGCAACTCTCCGTACATCGT	0.507									Cardiofaciocutaneous_syndrome				17	41					0	0	0.000566183	0	0
NOX5	79400	broad.mit.edu	37	15	69320683	69320683	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr15:69320683C>T	uc002ars.1	+	3	323	c.303C>T	c.(301-303)CTC>CTT	p.L101L	NOX5_uc002arp.1_Silent_p.L83L|NOX5_uc002arq.1_Silent_p.L83L|NOX5_uc010bid.1_Silent_p.L94L|NOX5_uc002arr.1_Silent_p.L101L|NOX5_uc010bie.1_5'UTR	NM_024505	NP_078781	Q96PH1	NOX5_HUMAN	NADPH oxidase, EF-hand calcium binding domain 5	101	Cytoplasmic (Potential).|EF-hand 3; atypical; contains an insert of 28 residues.|N-terminal regulatory region; interacts with the C-terminal catalytic region in a calcium-dependent manner.				angiogenesis|angiogenesis|cytokine secretion|cytokinesis|electron transport chain|endothelial cell proliferation|induction of apoptosis|positive regulation of reactive oxygen species metabolic process|regulation of fusion of sperm to egg plasma membrane|regulation of proton transport|superoxide anion generation	endoplasmic reticulum|endoplasmic reticulum|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|hydrogen ion channel activity|NADP binding|superoxide-generating NADPH oxidase activity			breast(1)|pancreas(1)	2						TCAAATTCCTCTTCCAGGTGT	0.557													23	86					0	0	0.00229938	0	0
TMEM202	338949	broad.mit.edu	37	15	72690727	72690727	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr15:72690727G>A	uc002auq.2	+	1	60	c.60G>A	c.(58-60)AAG>AAA	p.K20K	TMEM202_uc002aur.2_RNA	NM_001080462	NP_001073931	A6NGA9	TM202_HUMAN	transmembrane protein 202	20						integral to membrane				central_nervous_system(1)|skin(1)	2						CCAAAATAAAGGGGAACCGGA	0.448													11	10					0	0	0.000673444	0	0
GOLGA6B	55889	broad.mit.edu	37	15	72953658	72953658	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr15:72953658G>A	uc010uks.1	+	8	659	c.618G>A	c.(616-618)AAG>AAA	p.K206K		NM_018652	NP_061122	A6NDN3	GOG6B_HUMAN	golgi autoantigen, golgin subfamily a, 6B	206	Potential.										0						AGACCATAAAGGAGCGGGCGC	0.592													12	129					0	0	0.00244969	0	0
CYP11A1	1583	broad.mit.edu	37	15	74659854	74659854	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr15:74659854C>T	uc002axt.2	-	1	228	c.73G>A	c.(73-75)GAG>AAG	p.E25K	CYP11A1_uc002axs.2_5'Flank|CYP11A1_uc010bjm.1_5'Flank|CYP11A1_uc010bjn.1_RNA|CYP11A1_uc010bjo.1_Missense_Mutation_p.E25K|CYP11A1_uc010ulj.1_5'UTR|CYP11A1_uc010bjq.2_Missense_Mutation_p.E25K	NM_000781	NP_000772	P05108	CP11A_HUMAN	cytochrome P450, family 11, subfamily A,	25					C21-steroid hormone biosynthetic process|cholesterol metabolic process|vitamin D metabolic process|xenobiotic metabolic process	mitochondrial matrix	cholesterol monooxygenase (side-chain-cleaving) activity|electron carrier activity|heme binding			ovary(2)	2					Aminoglutethimide(DB00357)|Cholecalciferol(DB00169)|Cimetidine(DB00501)|Clotrimazole(DB00257)|Digitoxin(DB01396)|Digoxin(DB00390)|Medroxyprogesterone(DB00603)|Ouabain(DB01092)|Progesterone(DB00396)|Testosterone(DB00624)|Trilostane(DB01108)	CCCAGCCCCTCCCTGGGGGCA	0.642													9	32					0	0	0.000274275	0	0
KIAA1199	57214	broad.mit.edu	37	15	81172150	81172151	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr15:81172150_81172151CC>TT	uc002bfw.1	+	4	595_596	c.335_336CC>TT	c.(334-336)GCC>GTT	p.A112V	KIAA1199_uc010unn.1_Missense_Mutation_p.A112V	NM_018689	NP_061159	Q8WUJ3	K1199_HUMAN	KIAA1199 precursor	112	G8.									upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3						GCTGGGAGTGCCCTCTGCCCTT	0.515													20	42					0	0	6.4e-05	0	0
TMC3	342125	broad.mit.edu	37	15	81624945	81624945	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr15:81624945C>T	uc002bgo.1	-	22	3118	c.3118G>A	c.(3118-3120)GAA>AAA	p.E1040K	TMC3_uc010blr.1_RNA	NM_001080532	NP_001074001	Q7Z5M5	TMC3_HUMAN	transmembrane channel-like 3	1040	Cytoplasmic (Potential).					integral to membrane				ovary(1)|liver(1)	2						GAGTCAGATTCCGTGAGGGAT	0.617													10	25					0	0	0.000442599	0	0
EFTUD1	79631	broad.mit.edu	37	15	82444125	82444125	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr15:82444125G>A	uc002bgt.1	-	18	2839	c.2670C>T	c.(2668-2670)GTC>GTT	p.V890V	EFTUD1_uc002bgs.1_Silent_p.V261V|EFTUD1_uc002bgu.1_Silent_p.V839V	NM_024580	NP_078856	Q7Z2Z2	ETUD1_HUMAN	elongation factor Tu GTP binding domain	890					mature ribosome assembly		GTP binding|GTPase activity|ribosome binding|translation elongation factor activity			ovary(1)	1						GAACAAAACAGACACCCATGA	0.473													10	39					0	0	0.000442599	0	0
DET1	55070	broad.mit.edu	37	15	89074362	89074362	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr15:89074362G>A	uc002bmr.2	-	2	727	c.575C>T	c.(574-576)TCC>TTC	p.S192F	DET1_uc002bmp.3_RNA|DET1_uc010bnk.2_RNA|DET1_uc002bmq.2_Missense_Mutation_p.S203F	NM_001144074	NP_001137546	Q7L5Y6	DET1_HUMAN	de-etiolated 1 isoform 2	192						nucleus				lung(1)|pancreas(1)	2	Lung NSC(78;0.105)|all_lung(78;0.182)		BRCA - Breast invasive adenocarcinoma(143;0.188)			GATATGGAGGGAATAGTCTTC	0.512													7	23					0	0	0.00198382	0	0
MAN2A2	4122	broad.mit.edu	37	15	91462949	91462950	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr15:91462949_91462950CC>AA	uc010bnz.2	+	23	3500_3501	c.3385_3386CC>AA	c.(3385-3387)CCG>AAG	p.P1129K	MAN2A2_uc002bqc.2_Missense_Mutation_p.P1129K|MAN2A2_uc010uql.1_Missense_Mutation_p.P791K|MAN2A2_uc010uqm.1_Missense_Mutation_p.P708K|MAN2A2_uc010uqn.1_RNA	NM_006122	NP_006113	P49641	MA2A2_HUMAN	mannosidase, alpha, class 2A, member 2	1129					mannose metabolic process|post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	alpha-mannosidase activity|carbohydrate binding|mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase activity|zinc ion binding			large_intestine(2)|ovary(1)	3	Lung NSC(78;0.0771)|all_lung(78;0.137)		Lung(145;0.229)			TCTGGCCTCCCCGTCCAACAGC	0.545													12	667					0	0	6.4e-05	0	0
PRC1	9055	broad.mit.edu	37	15	91525035	91525036	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr15:91525035_91525036GG>TT	uc002bqm.2	-	4	600_601	c.443_444CC>AA	c.(442-444)CCC>CAA	p.P148Q	PRC1_uc002bqn.2_Missense_Mutation_p.P148Q|PRC1_uc002bqo.2_Missense_Mutation_p.P148Q|PRC1_uc010uqs.1_Missense_Mutation_p.P107Q|PRC1_uc010uqt.1_Missense_Mutation_p.P96Q	NM_003981	NP_003972	O43663	PRC1_HUMAN	protein regulator of cytokinesis 1 isoform 1	148	Dimerization.				cytokinesis|mitotic spindle elongation	cytoplasm|nucleus|spindle microtubule|spindle pole	protein binding			ovary(1)|skin(1)	2	Lung NSC(78;0.0987)|all_lung(78;0.175)					CTTCTAAGCTGGGCACTGAGGC	0.426													13	713					0	0	6.4e-05	0	0
SV2B	9899	broad.mit.edu	37	15	91835650	91835651	+	Nonsense_Mutation	DNP	GG	TT	TT			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr15:91835650_91835651GG>TT	uc002bqv.2	+	12	2311_2312	c.1920_1921GG>TT	c.(1918-1923)CTGGGA>CTTTGA	p.G641*	SV2B_uc010uqv.1_Nonsense_Mutation_p.G490*|SV2B_uc002bqu.3_RNA	NM_014848	NP_055663	Q7L1I2	SV2B_HUMAN	synaptic vesicle protein 2B homolog	641	Helical; (Potential).				neurotransmitter transport	acrosomal vesicle|cell junction|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			ovary(3)|central_nervous_system(2)|skin(2)|upper_aerodigestive_tract(1)	8	Lung NSC(78;0.0987)|all_lung(78;0.172)		BRCA - Breast invasive adenocarcinoma(143;0.0895)			GCGCCATCCTGGGAAACACCAT	0.465													11	579					0	0	6.4e-05	0	0
C15orf51	196968	broad.mit.edu	37	15	100332800	100332800	+	RNA	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr15:100332800G>A	uc010urx.1	-	5		c.1392C>T			C15orf51_uc010ury.1_RNA	NR_003260				Homo sapiens cDNA FLJ43799 fis, clone TESTI4000288.												0						TGCTGGAGAAGATGTTGCGGC	0.527													5	43					0	0	0.00116845	0	0
LRRK1	79705	broad.mit.edu	37	15	101609028	101609028	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr15:101609028A>G	uc002bwr.2	+	34	6342	c.6023A>G	c.(6022-6024)GAG>GGG	p.E2008G	LRRK1_uc010usb.1_RNA|LRRK1_uc010usc.1_RNA|LRRK1_uc002bws.2_RNA	NM_024652	NP_078928	Q38SD2	LRRK1_HUMAN	leucine-rich repeat kinase 1	2008					small GTPase mediated signal transduction	mitochondrion	ATP binding|GTP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			ovary(4)|lung(4)|central_nervous_system(3)|large_intestine(1)	12	Melanoma(26;0.00505)|Lung NSC(78;0.00793)|all_lung(78;0.0094)		OV - Ovarian serous cystadenocarcinoma(32;0.000932)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			GGCCGGCTGGAGGCTTGCACT	0.607													3	52					0	0	0.00024832	0	0
WASH3P	374666	broad.mit.edu	37	15	102516443	102516443	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr15:102516443G>A	uc002cdi.2	+	11	2189	c.769G>A	c.(769-771)GAG>AAG	p.E257K	WASH3P_uc002cdl.2_Missense_Mutation_p.E257K|WASH3P_uc002cdk.2_RNA|WASH3P_uc002cdp.2_Missense_Mutation_p.E257K|WASH3P_uc010bpo.2_RNA|WASH3P_uc002cdq.2_RNA|WASH3P_uc002cdr.2_RNA	NR_003659				RecName: Full=WAS protein family homolog 2; AltName: Full=Protein FAM39B; AltName: Full=CXYorf1-like protein on chromosome 2;												0						ACAGGCAGAGGAGGACGAGGA	0.657													6	62					0	0	0.000157383	0	0
RHBDF1	64285	broad.mit.edu	37	16	112805	112806	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr16:112805_112806GG>AA	uc002cfl.3	-	9	910_911	c.762_763CC>TT	c.(760-765)TTCCCC>TTTTCC	p.P255S	RHBDF1_uc010uty.1_Missense_Mutation_p.P278S|RHBDF1_uc010utz.1_Missense_Mutation_p.P255S|RHBDF1_uc010bqo.1_RNA	NM_022450	NP_071895	Q96CC6	RHDF1_HUMAN	rhomboid family 1	255	Cytoplasmic (Potential).				cell migration|cell proliferation|negative regulation of protein secretion|protein transport|proteolysis|regulation of epidermal growth factor receptor signaling pathway|regulation of proteasomal protein catabolic process	endoplasmic reticulum membrane|Golgi membrane|integral to membrane	growth factor binding|serine-type endopeptidase activity			ovary(1)|pancreas(1)	2		all_cancers(16;2.56e-05)|all_epithelial(16;0.000116)|Hepatocellular(780;0.0068)|Lung NSC(18;0.0795)|all_lung(18;0.159)				AGCTCATCGGGGAAATCAGTTG	0.624													16	56					0	0	6.4e-05	0	0
PIGQ	9091	broad.mit.edu	37	16	624315	624315	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr16:624315C>T	uc002cho.2	+	2	343	c.241C>T	c.(241-243)CTG>TTG	p.L81L	PIGQ_uc010bqw.2_Silent_p.L81L|PIGQ_uc002chm.2_Silent_p.L81L|PIGQ_uc002chn.2_Silent_p.L81L|PIGQ_uc010uui.1_Silent_p.L95L	NM_148920	NP_683721	Q9BRB3	PIGQ_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	81					C-terminal protein lipidation|carbohydrate metabolic process|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane	phosphatidylinositol N-acetylglucosaminyltransferase activity			central_nervous_system(1)	1		Hepatocellular(780;0.00335)				GGGCCGCTTCCTGGAGAGCCT	0.731													9	24					0	0	0.000978159	0	0
RAB40C	57799	broad.mit.edu	37	16	677501	677501	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr16:677501C>T	uc002chr.2	+	6	841	c.725C>T	c.(724-726)TCC>TTC	p.S242F	RAB40C_uc002chq.2_Missense_Mutation_p.S223F|WFIKKN1_uc002chs.1_5'Flank	NM_021168	NP_066991	Q96S21	RB40C_HUMAN	RAB40C, member RAS oncogene family	242					protein transport|small GTPase mediated signal transduction	plasma membrane	GTP binding				0		Hepatocellular(780;0.0218)				CGTTCCTACTCCCTGGCCAGC	0.652													37	98					0	0	0.00170553	0	0
TSC2	7249	broad.mit.edu	37	16	2131643	2131643	+	Missense_Mutation	SNP	T	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr16:2131643T>A	uc002con.2	+	31	3764	c.3658T>A	c.(3658-3660)TCC>ACC	p.S1220T	TSC2_uc010bsd.2_Missense_Mutation_p.S1220T|TSC2_uc002coo.2_Missense_Mutation_p.S1176T|TSC2_uc010uvv.1_Missense_Mutation_p.S1140T|TSC2_uc010uvw.1_Missense_Mutation_p.S1128T|TSC2_uc002cop.2_Missense_Mutation_p.S976T|TSC2_uc002coq.2_5'Flank|TSC2_uc002cor.2_5'Flank	NM_000548	NP_000539	P49815	TSC2_HUMAN	tuberous sclerosis 2 isoform 1	1220					cell cycle arrest|endocytosis|heart development|insulin receptor signaling pathway|insulin-like growth factor receptor signaling pathway|negative regulation of cell size|negative regulation of phosphatidylinositol 3-kinase cascade|negative regulation of protein kinase B signaling cascade|negative regulation of TOR signaling cascade|negative regulation of Wnt receptor signaling pathway|nerve growth factor receptor signaling pathway|neural tube closure|phosphatidylinositol-mediated signaling|positive chemotaxis|protein import into nucleus|protein kinase B signaling cascade|regulation of endocytosis|regulation of insulin receptor signaling pathway|regulation of small GTPase mediated signal transduction	Golgi apparatus|nucleus|perinuclear region of cytoplasm|TSC1-TSC2 complex	GTPase activator activity|protein homodimerization activity			central_nervous_system(4)|lung(3)|ovary(2)|pancreas(1)	10		Hepatocellular(780;0.0202)				CAGCCCTTTCTCCTCGGACAT	0.617			D|Mis|N|F|S			hamartoma|renal cell			Tuberous_Sclerosis				45	76					0	0	0.000680045	0	0
CCNF	899	broad.mit.edu	37	16	2485844	2485844	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr16:2485844C>T	uc002cqd.1	+	4	404	c.316C>T	c.(316-318)CTG>TTG	p.L106L	CCNF_uc002cqe.1_5'UTR	NM_001761	NP_001752	P41002	CCNF_HUMAN	cyclin F	106					cell division|mitosis|negative regulation of centrosome duplication|protein ubiquitination|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	centriole|nucleus|SCF ubiquitin ligase complex	protein binding			central_nervous_system(1)|kidney(1)	2		Ovarian(90;0.17)				TGCTGTGAAGCTGGGCATAGC	0.458													11	54					0	0	0.00074312	0	0
TBC1D24	57465	broad.mit.edu	37	16	2569310	2569310	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr16:2569310C>T	uc002cqm.2	+	2	1172	c.1057C>T	c.(1057-1059)CCC>TCC	p.P353S	ATP6V0C_uc002cqn.2_Silent_p.I57I|ATP6V0C_uc002cqo.2_Silent_p.I14I|AMDHD2_uc002cqp.2_5'Flank|AMDHD2_uc002cqq.2_5'Flank|AMDHD2_uc010uwc.1_5'Flank|AMDHD2_uc010uwd.1_5'Flank	NM_020705	NP_065756	Q9ULP9	TBC24_HUMAN	TBC1 domain family, member 24	Error:Variant_position_missing_in_Q9ULP9_after_alignment					neuron projection development	cytoplasm	protein binding|Rab GTPase activator activity				0						AGTCCATCATCCCAGTGGTCA	0.602													15	40					0	0	0.000422831	0	0
SEC14L5	9717	broad.mit.edu	37	16	5040863	5040863	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr16:5040863C>T	uc002cye.2	+	5	621	c.441C>T	c.(439-441)ATC>ATT	p.I147I		NM_014692	NP_055507	O43304	S14L5_HUMAN	SEC14-like 5	147	PRELI/MSF1.					integral to membrane|intracellular	transporter activity				0						TGGAGAAGATCGCCATGAAGC	0.463													8	14					0	0	0.000274275	0	0
ABCC6	368	broad.mit.edu	37	16	16271312	16271312	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr16:16271312C>T	uc002den.3	-	19	2624	c.2587G>A	c.(2587-2589)GGA>AGA	p.G863R	ABCC6_uc010bvo.2_Intron	NM_001171	NP_001162	O95255	MRP6_HUMAN	ATP-binding cassette, sub-family C, member 6	863	Cytoplasmic (By similarity).				response to drug|visual perception	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			skin(2)|ovary(1)	3				UCEC - Uterine corpus endometrioid carcinoma (3;0.123)		CTAGTACCTCCTTCTCCTCTA	0.582													37	82					0	0	0.00128727	0	0
TMC5	79838	broad.mit.edu	37	16	19474639	19474639	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr16:19474639C>T	uc002dgc.3	+	7	1935	c.1186C>T	c.(1186-1188)CGT>TGT	p.R396C	TMC5_uc010vaq.1_Missense_Mutation_p.R396C|TMC5_uc002dgb.3_Missense_Mutation_p.R396C|TMC5_uc010var.1_Missense_Mutation_p.R396C|TMC5_uc002dgd.1_Missense_Mutation_p.R150C|TMC5_uc002dge.3_Missense_Mutation_p.R150C|TMC5_uc002dgf.3_Missense_Mutation_p.R79C|TMC5_uc002dgg.3_Missense_Mutation_p.R37C	NM_001105248	NP_001098718	Q6UXY8	TMC5_HUMAN	transmembrane channel-like 5 isoform a	396	Extracellular (Potential).					integral to membrane				skin(1)	1						ACAGACCCATCGTATCCTTCA	0.408													26	63					0	0	0.000878237	0	0
DNAH3	55567	broad.mit.edu	37	16	20976239	20976239	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr16:20976239C>T	uc010vbe.1	-	53	8967	c.8967G>A	c.(8965-8967)GGG>GGA	p.G2989G	DNAH3_uc010vbd.1_Silent_p.G424G	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	2989					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		TATAGCGGATCCCCAGCTGTC	0.527													35	53					0	0	0.000814825	0	0
VWA3A	146177	broad.mit.edu	37	16	22157565	22157565	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr16:22157565G>A	uc010vbq.1	+	27	2835	c.2739G>A	c.(2737-2739)GTG>GTA	p.V913V	VWA3A_uc010bxd.2_RNA|VWA3A_uc002dkg.3_5'UTR|VWA3A_uc010bxe.1_5'UTR	NM_173615	NP_775886	A6NCI4	VWA3A_HUMAN	von Willebrand factor A domain containing 3A	913						extracellular region				skin(1)	1				GBM - Glioblastoma multiforme(48;0.0439)		AGGGAGTGGTGAGACACATCC	0.532													6	27					0	0	0.00198382	0	0
EEF2K	29904	broad.mit.edu	37	16	22278015	22278015	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr16:22278015C>T	uc002dki.2	+	15	2067	c.1582C>T	c.(1582-1584)CTG>TTG	p.L528L	EEF2K_uc002dkh.2_RNA	NM_013302	NP_037434	O00418	EF2K_HUMAN	elongation factor-2 kinase	528					insulin receptor signaling pathway|translational elongation	cytosol	ATP binding|calcium ion binding|calmodulin binding|elongation factor-2 kinase activity|translation factor activity, nucleic acid binding			large_intestine(1)	1				GBM - Glioblastoma multiforme(48;0.0223)		GCAGGTCCATCTGGCCATGGT	0.662													20	31					0	0	0.00152264	0	0
SCNN1B	6338	broad.mit.edu	37	16	23364159	23364159	+	Nonsense_Mutation	SNP	G	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr16:23364159G>T	uc002dln.2	+	3	525	c.349G>T	c.(349-351)GAG>TAG	p.E117*		NM_000336	NP_000327	P51168	SCNNB_HUMAN	sodium channel, nonvoltage-gated 1, beta	117	Extracellular (By similarity).				excretion|sensory perception of taste	apical plasma membrane	ligand-gated sodium channel activity|WW domain binding			ovary(3)|breast(2)|large_intestine(1)|pancreas(1)	7				GBM - Glioblastoma multiforme(48;0.0465)	Amiloride(DB00594)|Triamterene(DB00384)	GGACCTGGATGAGCTGATGGA	0.507													31	85					2.08457e-15	9.84816e-15	0.00209593	1	0
APOB48R	55911	broad.mit.edu	37	16	28506011	28506011	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr16:28506011C>T	uc002dqb.1	+	1	19	c.9C>T	c.(7-9)TTC>TTT	p.F3F	uc010vct.1_Intron|CLN3_uc002dpl.2_5'Flank|CLN3_uc010vcu.1_5'Flank|CLN3_uc002dpo.2_5'Flank|CLN3_uc002dpn.2_5'Flank|CLN3_uc002dpm.2_5'Flank|CLN3_uc010vcv.1_5'Flank|CLN3_uc010byd.2_5'Flank|CLN3_uc002dpp.2_5'Flank|CLN3_uc002dpt.1_5'Flank|CLN3_uc002dpq.1_5'Flank|CLN3_uc010bye.1_5'Flank|CLN3_uc002dpr.1_5'Flank|CLN3_uc010byf.1_5'Flank|CLN3_uc002dps.1_5'Flank|CLN3_uc002dpu.1_5'Flank|CLN3_uc002dpw.1_5'Flank|CLN3_uc010vcw.1_5'Flank|CLN3_uc002dqa.2_5'Flank|CLN3_uc010vcx.1_5'Flank|CLN3_uc002dpx.1_5'Flank|CLN3_uc002dpy.1_5'Flank|CLN3_uc002dpz.1_5'Flank|APOB48R_uc010byg.1_5'UTR	NM_018690	NP_061160	Q0VD83	APOBR_HUMAN	apolipoprotein B48 receptor	3					cholesterol metabolic process|lipid transport	chylomicron|low-density lipoprotein particle|plasma membrane|very-low-density lipoprotein particle					0						GGATGGACTTCCTCCGGCTAT	0.592													36	72					0	0	0.00148497	0	0
SPNS1	83985	broad.mit.edu	37	16	28994599	28994599	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr16:28994599C>T	uc010vdi.1	+	11	1448	c.1308C>T	c.(1306-1308)TAC>TAT	p.Y436Y	uc010vct.1_Intron|SPNS1_uc002drx.2_Silent_p.Y363Y|SPNS1_uc002dsa.2_Silent_p.Y436Y|SPNS1_uc002drz.2_Silent_p.Y384Y|SPNS1_uc010byp.2_Silent_p.Y362Y|SPNS1_uc010byq.1_Silent_p.Y368Y|LAT_uc010vdj.1_5'Flank|LAT_uc002dsb.2_5'Flank|LAT_uc002dsd.2_5'Flank|LAT_uc002dsc.2_5'Flank|LAT_uc010vdk.1_5'Flank|LAT_uc010vdl.1_5'Flank	NM_001142448	NP_001135920	Q9H2V7	SPNS1_HUMAN	spinster homolog 1 isoform 1	436	Helical; (Potential).				lipid transport|transmembrane transport	integral to membrane|mitochondrial inner membrane	protein binding				0						GGAGCCCCTACCTCATTGGCC	0.612													27	41					0	0	0.00209593	0	0
INO80E	283899	broad.mit.edu	37	16	30012333	30012333	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr16:30012333C>T	uc002dvg.1	+	5	469	c.368C>T	c.(367-369)TCC>TTC	p.S123F	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|INO80E_uc002dvh.1_RNA|INO80E_uc002dvi.1_Missense_Mutation_p.S123F|INO80E_uc002dvj.1_RNA|INO80E_uc002dvk.1_Missense_Mutation_p.S123F	NM_173618	NP_775889	Q8NBZ0	IN80E_HUMAN	INO80 complex subunit E	123	Pro-rich.				DNA recombination|DNA repair|regulation of transcription, DNA-dependent|transcription, DNA-dependent	Ino80 complex				skin(1)	1						CTTCAGGCCTCCGGGGTCCCC	0.652													16	48					0	0	0.000566183	0	0
FBXL19	54620	broad.mit.edu	37	16	30958426	30958426	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr16:30958426C>T	uc002eab.2	+	11	2118	c.1960C>T	c.(1960-1962)CTA>TTA	p.L654L	FBXL19_uc002dzz.1_Silent_p.L342L|FBXL19_uc002eaa.1_Silent_p.L553L|ORAI3_uc002eac.2_5'Flank	NM_001099784	NP_001093254	Q6PCT2	FXL19_HUMAN	F-box and leucine-rich repeat protein 19	654	LRR 5.						DNA binding|zinc ion binding			ovary(2)|lung(1)|breast(1)	4						CTGCCCTCGTCTACGCCGCCT	0.706													6	5					0	0	0.00198382	0	0
NOD2	64127	broad.mit.edu	37	16	50765683	50765683	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr16:50765683G>A	uc002egm.1	+	12	3181	c.3076G>A	c.(3076-3078)GAG>AAG	p.E1026K	NOD2_uc010vgq.1_Missense_Mutation_p.E71K	NM_022162	NP_071445	Q9HC29	NOD2_HUMAN	nucleotide-binding oligomerization domain	1026	LRR 9.				activation of MAPK activity involved in innate immune response|cytokine production involved in immune response|detection of bacterium|detection of muramyl dipeptide|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of macrophage apoptosis|nucleotide-binding oligomerization domain containing 2 signaling pathway|positive regulation of B cell activation|positive regulation of dendritic cell antigen processing and presentation|positive regulation of epithelial cell proliferation|positive regulation of ERK1 and ERK2 cascade|positive regulation of gamma-delta T cell activation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-1 beta secretion|positive regulation of interleukin-10 production|positive regulation of interleukin-17 production|positive regulation of interleukin-6 production|positive regulation of JNK cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of Notch signaling pathway|positive regulation of phosphatidylinositol 3-kinase activity|positive regulation of prostaglandin-E synthase activity|positive regulation of prostaglandin-endoperoxide synthase activity|positive regulation of stress-activated MAPK cascade|positive regulation of tumor necrosis factor production|positive regulation of type 2 immune response|protein oligomerization|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cell surface|cytosol|plasma membrane|vesicle	ATP binding|CARD domain binding|muramyl dipeptide binding|protein kinase binding			ovary(3)|skin(1)	4		all_cancers(37;0.0156)				TTTCTCTCTAGAGGAGGTTGA	0.493													15	50					0	0	0.000566183	0	0
TOX3	27324	broad.mit.edu	37	16	52497959	52497959	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr16:52497959C>T	uc002egw.2	-	3	466	c.295G>A	c.(295-297)GGA>AGA	p.G99R	TOX3_uc010vgt.1_Missense_Mutation_p.G94R|TOX3_uc010vgu.1_Missense_Mutation_p.G99R	NM_001080430	NP_001073899	O15405	TOX3_HUMAN	TOX high mobility group box family member 3	99					apoptosis|negative regulation of neuron apoptosis|positive regulation of anti-apoptosis|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	chromatin binding|estrogen response element binding|phosphoprotein binding|protein homodimerization activity				0						AATTCACTTCCCTGGGAAGGC	0.532													27	40					0	0	0.000720815	0	0
CETP	1071	broad.mit.edu	37	16	57005272	57005272	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr16:57005272G>A	uc002eki.2	+	7	694	c.637G>A	c.(637-639)GAT>AAT	p.D213N	CETP_uc002ekj.2_Missense_Mutation_p.D213N	NM_000078	NP_000069	P11597	CETP_HUMAN	cholesteryl ester transfer protein, plasma	213					cholesterol homeostasis|cholesterol metabolic process|high-density lipoprotein particle remodeling|lipoprotein metabolic process|low-density lipoprotein particle remodeling|phosphatidylcholine metabolic process|phospholipid homeostasis|receptor-mediated endocytosis|regulation of cholesterol efflux|triglyceride homeostasis|triglyceride metabolic process|very-low-density lipoprotein particle remodeling	high-density lipoprotein particle|vesicle	cholesterol binding|cholesterol transporter activity|phosphatidylcholine binding|phospholipid transporter activity|triglyceride binding			central_nervous_system(1)|skin(1)	2						CATCATGGCCGATTTTGTCCA	0.552													90	196					0	0	0.000781405	0	0
GPR97	222487	broad.mit.edu	37	16	57719839	57719839	+	Splice_Site	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr16:57719839G>A	uc002emh.2	+	11	1643	c.1540_splice	c.e11+1	p.G514_splice	GPR97_uc010vhv.1_Splice_Site_p.G394_splice|GPR97_uc010cdd.2_Splice_Site|GPR97_uc010cde.2_Splice_Site_p.G122_splice	NM_170776	NP_740746	Q86Y34	GPR97_HUMAN	G protein-coupled receptor 97 precursor						neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(1)	1						TCCTTGCAAGGTGAGGCCCCT	0.587													31	74					0	0	0.00058488	0	0
CCDC135	84229	broad.mit.edu	37	16	57738858	57738858	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr16:57738858G>A	uc002emi.2	+	6	859	c.770G>A	c.(769-771)AGG>AAG	p.R257K	CCDC135_uc002emj.2_Missense_Mutation_p.R257K|CCDC135_uc002emk.2_Missense_Mutation_p.R192K	NM_032269	NP_115645	Q8IY82	CC135_HUMAN	coiled-coil domain containing 135	257	Potential.					cytoplasm				central_nervous_system(1)	1						CTGTGCAGCAGGTTTGAGCAG	0.557													15	31					0	0	0.000958276	0	0
CDH8	1006	broad.mit.edu	37	16	61761118	61761118	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr16:61761118C>T	uc002eog.1	-	9	1668	c.1416G>A	c.(1414-1416)AGG>AGA	p.R472R	CDH8_uc002eoh.2_Silent_p.R241R	NM_001796	NP_001787	P55286	CADH8_HUMAN	cadherin 8, type 2 preproprotein	472	Extracellular (Potential).|Cadherin 4.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|skin(2)|breast(1)	9		Ovarian(137;0.0799)|Melanoma(118;0.16)		UCEC - Uterine corpus endometrioid carcinoma (183;0.196)|Epithelial(162;0.0155)|all cancers(182;0.0305)|OV - Ovarian serous cystadenocarcinoma(108;0.0499)|BRCA - Breast invasive adenocarcinoma(181;0.249)		GACTGTGGTTCCCTATGGGAA	0.413													3	9					0	0	0.00024832	0	0
CDH8	1006	broad.mit.edu	37	16	61935284	61935284	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr16:61935284C>T	uc002eog.1	-	3	598	c.346G>A	c.(346-348)GGA>AGA	p.G116R		NM_001796	NP_001787	P55286	CADH8_HUMAN	cadherin 8, type 2 preproprotein	116	Extracellular (Potential).|Cadherin 1.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|skin(2)|breast(1)	9		Ovarian(137;0.0799)|Melanoma(118;0.16)		UCEC - Uterine corpus endometrioid carcinoma (183;0.196)|Epithelial(162;0.0155)|all cancers(182;0.0305)|OV - Ovarian serous cystadenocarcinoma(108;0.0499)|BRCA - Breast invasive adenocarcinoma(181;0.249)		TGGATATCTCCAGTTACATCA	0.443													21	72					0	0	0.00121646	0	0
B3GNT9	84752	broad.mit.edu	37	16	67183498	67183498	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr16:67183498G>A	uc002erf.2	-	2	1212	c.891C>T	c.(889-891)GCC>GCT	p.A297A	uc002erg.1_5'UTR	NM_033309	NP_171608	Q6UX72	B3GN9_HUMAN	UDP-GlcNAc:betaGal	297	Lumenal (Potential).				protein glycosylation	Golgi membrane|integral to membrane	galactosyltransferase activity				0						GGTGCAGCGTGGCCCCGGAAA	0.697													6	7					0	0	0.00116845	0	0
PLEKHG4	25894	broad.mit.edu	37	16	67319276	67319276	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr16:67319276C>T	uc002eso.3	+	13	4814	c.2279C>T	c.(2278-2280)CCC>CTC	p.P760L	PLEKHG4_uc002esp.3_Missense_Mutation_p.P567L|PLEKHG4_uc002esq.3_Missense_Mutation_p.P760L|PLEKHG4_uc010cef.2_Missense_Mutation_p.P760L|PLEKHG4_uc002ess.3_Missense_Mutation_p.P760L|PLEKHG4_uc010ceg.2_Missense_Mutation_p.P679L	NM_015432	NP_056247	Q58EX7	PKHG4_HUMAN	pleckstrin homology domain containing, family G	760	DH.				regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			skin(1)|pancreas(1)	2				OV - Ovarian serous cystadenocarcinoma(108;0.00376)|Epithelial(162;0.0173)|all cancers(182;0.116)|Kidney(780;0.119)		AACTATTTCCCCGAGCTGGAT	0.617													51	110					0	0	0.000781405	0	0
KCTD19	146212	broad.mit.edu	37	16	67325353	67325353	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr16:67325353C>T	uc002esu.2	-	14	2475	c.2424G>A	c.(2422-2424)CTG>CTA	p.L808L	KCTD19_uc002est.2_Silent_p.L580L|KCTD19_uc010vjj.1_Silent_p.L551L	NM_001100915	NP_001094385	Q17RG1	KCD19_HUMAN	potassium channel tetramerisation domain	808						voltage-gated potassium channel complex	voltage-gated potassium channel activity			skin(1)	1		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0311)|Epithelial(162;0.0906)		GAGAGAAACTCAGGAAAGTCA	0.512													14	20					0	0	0.000308642	0	0
PSMB10	5699	broad.mit.edu	37	16	67969901	67969901	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr16:67969901G>A	uc002eux.1	-	4	449	c.348C>T	c.(346-348)GCC>GCT	p.A116A		NM_002801	NP_002792	P40306	PSB10_HUMAN	proteasome beta 10 subunit proprotein	116					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|humoral immune response|interspecies interaction between organisms|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	cytoplasm|nucleus|proteasome core complex	threonine-type endopeptidase activity				0		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.00415)|Epithelial(162;0.0182)|all cancers(182;0.119)		GAGTGACCGTGGCCACGCGGG	0.677													17	39					0	0	0.000958276	0	0
HYDIN	54768	broad.mit.edu	37	16	70954854	70954854	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr16:70954854G>A	uc002ezr.2	-	46	7550	c.7422C>T	c.(7420-7422)GAC>GAT	p.D2474D		NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	2475										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				CTTGCTTCCGGTCCCAGTACA	0.602													7	15					0	0	0.000673444	0	0
AP1G1	164	broad.mit.edu	37	16	71784130	71784130	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr16:71784130G>A	uc010cgg.2	-	14	1704	c.1390C>T	c.(1390-1392)CTT>TTT	p.L464F	AP1G1_uc002fba.2_Missense_Mutation_p.L467F|AP1G1_uc002fbb.2_Missense_Mutation_p.L487F|AP1G1_uc002faz.2_5'Flank	NM_001128	NP_001119	O43747	AP1G1_HUMAN	adaptor-related protein complex 1, gamma 1	464					endocytosis|intracellular protein transport|post-Golgi vesicle-mediated transport|regulation of defense response to virus by virus|viral reproduction	clathrin adaptor complex|clathrin coated vesicle membrane|cytosol|Golgi membrane|lysosomal membrane|recycling endosome	kinesin binding|protein transporter activity			ovary(2)	2		Ovarian(137;0.125)				TAATCACCAAGAATTGCTTTG	0.368													56	137					0	0	0.000781405	0	0
PMFBP1	83449	broad.mit.edu	37	16	72162589	72162589	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr16:72162589G>A	uc002fcc.3	-	14	2242	c.2070C>T	c.(2068-2070)ACC>ACT	p.T690T	PMFBP1_uc002fcd.2_Silent_p.T685T|PMFBP1_uc002fce.2_Intron|PMFBP1_uc002fcf.2_Silent_p.T540T|PMFBP1_uc010cgo.1_5'UTR	NM_031293	NP_112583	Q8TBY8	PMFBP_HUMAN	polyamine modulated factor 1 binding protein 1	690	Potential.									ovary(2)	2		Ovarian(137;0.179)				CTTGCTGGCTGGTGTTGTATT	0.443													16	46					0	0	0.00074312	0	0
ZFHX3	463	broad.mit.edu	37	16	72822544	72822544	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr16:72822544G>T	uc002fck.2	-	10	10304	c.9631C>A	c.(9631-9633)CCC>ACC	p.P3211T	ZFHX3_uc002fcl.2_Missense_Mutation_p.P2297T	NM_006885	NP_008816	Q15911	ZFHX3_HUMAN	zinc finger homeobox 3 isoform A	3211	Poly-Pro.				muscle organ development|negative regulation of myoblast differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|positive regulation of myoblast differentiation	transcription factor complex	enzyme binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|skin(2)	4		Ovarian(137;0.13)				GGCGGCGGGGGAGgctgctgc	0.512													61	134					2.22609e-26	1.05438e-25	0.000781405	1	0
ADAMTS18	170692	broad.mit.edu	37	16	77355084	77355084	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr16:77355084G>A	uc002ffc.3	-	15	2598	c.2179C>T	c.(2179-2181)CAT>TAT	p.H727Y	ADAMTS18_uc010chc.1_Missense_Mutation_p.H315Y|ADAMTS18_uc002ffe.1_Missense_Mutation_p.H423Y	NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	727	Cys-rich.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						CCTAGTTCATGATCACATCCC	0.393													31	64					0	0	0.00209593	0	0
C16orf46	123775	broad.mit.edu	37	16	81094907	81094907	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr16:81094907G>A	uc002fgc.3	-	4	1306	c.1047C>T	c.(1045-1047)ATC>ATT	p.I349I	C16orf46_uc010chf.2_Silent_p.I349I|C16orf46_uc010vno.1_Silent_p.I76I	NM_152337	NP_689550	Q6P387	CP046_HUMAN	chromosome 16 open reading frame 46 isoform 2	349											0						GCTTTCGGGTGATCACAGGAG	0.512													32	102					0	0	0.00170553	0	0
PLCG2	5336	broad.mit.edu	37	16	81946258	81946258	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr16:81946258C>T	uc002fgt.2	+	19	2143	c.1991C>T	c.(1990-1992)CCC>CTC	p.P664L	PLCG2_uc010chg.1_Missense_Mutation_p.P664L	NM_002661	NP_002652	P16885	PLCG2_HUMAN	phospholipase C, gamma 2	664	SH2 2.				intracellular signal transduction|phospholipid catabolic process|platelet activation	plasma membrane	phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			large_intestine(4)|lung(2)|ovary(1)|skin(1)	8						ATGAGGATTCCCCGGGACGGG	0.632													13	31					0	0	0.00244969	0	0
TCF25	22980	broad.mit.edu	37	16	89965042	89965042	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr16:89965042G>A	uc002fpb.2	+	10	1182	c.1100G>A	c.(1099-1101)TGC>TAC	p.C367Y	TCF25_uc002fpc.2_Missense_Mutation_p.C132Y	NM_014972	NP_055787	Q9BQ70	TCF25_HUMAN	NULP1	367					heart development|negative regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity				0		all_cancers(9;4.71e-08)|Lung NSC(15;0.000192)|all_lung(18;0.000319)|all_neural(9;0.0122)|all_hematologic(23;0.027)		BRCA - Breast invasive adenocarcinoma(80;0.0288)		CTGGAGTACTGCAAGCTCATC	0.607													37	74					0	0	0.000814825	0	0
ZMYND15	84225	broad.mit.edu	37	17	4646701	4646701	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr17:4646701C>T	uc002fyt.2	+	6	1287	c.1248C>T	c.(1246-1248)TTC>TTT	p.F416F	ZMYND15_uc002fyv.2_Silent_p.F416F|ZMYND15_uc002fyu.2_Silent_p.F416F	NM_032265	NP_115641	Q9H091	ZMY15_HUMAN	zinc finger, MYND-type containing 15 isoform 2	416							zinc ion binding				0						GCCCGGGCTTCTCCAGACACC	0.627													41	149					0	0	0.000680045	0	0
ALOX12	239	broad.mit.edu	37	17	6902045	6902045	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr17:6902045G>A	uc002gdx.3	+	4	484	c.431G>A	c.(430-432)TGG>TAG	p.W144*		NM_000697	NP_000688	P18054	LOX12_HUMAN	arachidonate 12-lipoxygenase	144	Lipoxygenase.				anti-apoptosis|cellular component movement|fatty acid oxidation|leukotriene biosynthetic process|positive regulation of cell adhesion|positive regulation of cell growth|positive regulation of cell proliferation|superoxide anion generation	cytosol|sarcolemma	arachidonate 12-lipoxygenase activity|hepoxilin-epoxide hydrolase activity|iron ion binding|lipoxygenase activity|protein binding			central_nervous_system(1)	1						TGGGCCACCTGGAAGGAAGGG	0.403													7	25					0	0	0.000157383	0	0
SLC2A4	6517	broad.mit.edu	37	17	7189753	7189754	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr17:7189753_7189754GG>TT	uc002gfp.2	+	11	1535_1536	c.1335_1336GG>TT	c.(1333-1338)ATGGGG>ATTTGG	p.445_446MG>IW	SLC2A4_uc010cmd.2_RNA	NM_001042	NP_001033	P14672	GTR4_HUMAN	glucose transporter 4	445_446	Helical; Name=12; (Potential).				carbohydrate metabolic process|glucose homeostasis|glucose import	external side of plasma membrane|integral to plasma membrane|perinuclear region of cytoplasm	D-glucose transmembrane transporter activity|protein binding				0						AGGAGGCTATGGGGCCCTACGT	0.545													10	398					0	0	6.4e-05	0	0
POLR2A	5430	broad.mit.edu	37	17	7402454	7402454	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr17:7402454C>T	uc002ghf.3	+	9	1666	c.1432C>T	c.(1432-1434)CCA>TCA	p.P478S	POLR2A_uc002ghe.2_Missense_Mutation_p.P478S	NM_000937	NP_000928	P24928	RPB1_HUMAN	DNA-directed RNA polymerase II A	478					mRNA capping|nuclear mRNA splicing, via spliceosome|positive regulation of viral transcription|protein phosphorylation|regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	DNA-directed RNA polymerase II, core complex	DNA binding|DNA-directed RNA polymerase activity|metal ion binding|RNA-directed RNA polymerase activity|ubiquitin protein ligase binding			pancreas(1)	1		Prostate(122;0.173)				CCGCATTCTCCCATGGTCTAC	0.557													37	77					0	0	0.00170553	0	0
SHBG	6462	broad.mit.edu	37	17	7535033	7535033	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr17:7535033C>T	uc002gie.2	+	5	720	c.682C>T	c.(682-684)CCT>TCT	p.P228S	SHBG_uc010cmo.2_Missense_Mutation_p.P116S|SHBG_uc010cmp.2_Missense_Mutation_p.P170S|SHBG_uc010cmq.2_Missense_Mutation_p.P116S|SHBG_uc010cmr.2_Missense_Mutation_p.P116S|SHBG_uc010cms.2_Intron|SHBG_uc010cmt.2_Missense_Mutation_p.P170S|SHBG_uc010cmu.2_Missense_Mutation_p.P170S|SHBG_uc010cmz.2_Missense_Mutation_p.P170S|SHBG_uc010cmv.2_Missense_Mutation_p.P116S|SHBG_uc010cmw.2_Missense_Mutation_p.P116S|SHBG_uc010cmx.2_Intron|SHBG_uc010cmy.2_Missense_Mutation_p.P170S|SHBG_uc002gid.3_Missense_Mutation_p.P170S|SHBG_uc010cnd.2_Missense_Mutation_p.P174S|SHBG_uc010cna.2_Intron|SHBG_uc010vue.1_Missense_Mutation_p.P210S|SHBG_uc010vuf.1_Missense_Mutation_p.P228S|SHBG_uc010cnb.2_Missense_Mutation_p.P228S|SHBG_uc010cnc.2_Missense_Mutation_p.P174S	NM_001040	NP_001031	P04278	SHBG_HUMAN	sex hormone-binding globulin isoform 1	228	Laminin G-like 2.				hormone transport	extracellular region	androgen binding|protein homodimerization activity	p.0?(1)|p.?(1)			0		all_cancers(10;0.0867)		READ - Rectum adenocarcinoma(115;0.168)	Danazol(DB01406)|Dromostanolone(DB00858)|Estradiol(DB00783)|Estrone(DB00655)|Fluoxymesterone(DB01185)|Hydrocortisone(DB00741)|Mitotane(DB00648)|Norethindrone(DB00717)|Testosterone(DB00624)	GATATTTCTCCCTCCAGGGAC	0.557													34	185					0	0	0.00111076	0	0
DNAH2	146754	broad.mit.edu	37	17	7684450	7684450	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr17:7684450C>T	uc002giu.1	+	38	6108	c.6094C>T	c.(6094-6096)CCC>TCC	p.P2032S		NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	2032					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				AGATCTGTTTCCCAACATTGA	0.368													35	155					0	0	0.00195071	0	0
CHD3	1107	broad.mit.edu	37	17	7806313	7806313	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr17:7806313C>T	uc002gje.2	+	22	3579	c.3429C>T	c.(3427-3429)ATC>ATT	p.I1143I	CHD3_uc002gjd.2_Silent_p.I1202I|CHD3_uc002gjf.2_Silent_p.I1143I|CHD3_uc002gjh.2_5'Flank	NM_001005273	NP_001005273	Q12873	CHD3_HUMAN	chromodomain helicase DNA binding protein 3	1143	Helicase C-terminal.				chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding|zinc ion binding			breast(1)	1		Prostate(122;0.202)				GCCTGGGCATCAATCTGGCCA	0.542													13	44					0	0	0.00185496	0	0
MYH10	4628	broad.mit.edu	37	17	8395693	8395693	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr17:8395693C>T	uc002gll.2	-	32	4596	c.4500G>A	c.(4498-4500)GAG>GAA	p.E1500E	MYH10_uc002glm.2_Silent_p.E1531E|MYH10_uc010cnx.2_Silent_p.E1509E	NM_005964	NP_005955	P35580	MYH10_HUMAN	myosin, heavy polypeptide 10, non-muscle	1500	Potential.				actin filament-based movement|axon guidance|cytokinesis after mitosis|regulation of cell shape	cell cortex|cleavage furrow|midbody|myosin complex|stress fiber	actin filament binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(2)	2						TCTCAAACTCCTCCTTGGCCT	0.592													32	132					0	0	0.00058488	0	0
WDR16	146845	broad.mit.edu	37	17	9515667	9515667	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr17:9515667G>A	uc002gly.2	+	8	965	c.896G>A	c.(895-897)CGA>CAA	p.R299Q	WDR16_uc002glz.2_Missense_Mutation_p.R231Q|WDR16_uc010coc.2_Missense_Mutation_p.R309Q	NM_145054	NP_659491	Q8N1V2	WDR16_HUMAN	WD40-repeat protein upregulated in HCC isoform	299	WD 4.					cytoplasm|intracellular membrane-bounded organelle	protein binding			skin(2)|ovary(1)|central_nervous_system(1)	4						ATCACACTTCGAGGAGAAGGA	0.428													11	61					0	0	0.000673444	0	0
GLP2R	9340	broad.mit.edu	37	17	9783799	9783799	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr17:9783799G>A	uc002gmd.1	+	11	1250	c.1250G>A	c.(1249-1251)CGA>CAA	p.R417Q		NM_004246	NP_004237	O95838	GLP2R_HUMAN	glucagon-like peptide 2 receptor precursor	417	Extracellular (Potential).				G-protein signaling, coupled to cAMP nucleotide second messenger|positive regulation of cell proliferation	integral to membrane|plasma membrane				lung(2)|ovary(1)	3					Glucagon recombinant(DB00040)	AAACTTATACGACTTTTCATT	0.393													47	82					0	0	0.000680045	0	0
MYH8	4626	broad.mit.edu	37	17	10304266	10304266	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr17:10304266C>T	uc002gmm.2	-	26	3360	c.3265G>A	c.(3265-3267)GAA>AAA	p.E1089K	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	1089	Potential.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						TTGCTGATTTCAAATTCTTTC	0.333									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				6	37					0	0	0.00116845	0	0
MYH1	4619	broad.mit.edu	37	17	10400485	10400485	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr17:10400485C>T	uc002gmo.2	-	33	4651	c.4557G>A	c.(4555-4557)CAG>CAA	p.Q1519Q	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	1519	Potential.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						CTTCTGCAATCTGTTCAGTGA	0.363													14	31					0	0	0.000308642	0	0
MYH1	4619	broad.mit.edu	37	17	10400755	10400755	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr17:10400755C>T	uc002gmo.2	-	32	4474	c.4380G>A	c.(4378-4380)TGG>TGA	p.W1460*	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	1460	Potential.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						ACTTCTGTTTCCATTCTGCCA	0.393													20	18					0	0	0.00152264	0	0
MYH1	4619	broad.mit.edu	37	17	10417207	10417207	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr17:10417207G>A	uc002gmo.2	-	8	766	c.672C>T	c.(670-672)ATC>ATT	p.I224I	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	224	Myosin head-like.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						GGTTGGCACTGATGATTTGAT	0.532													16	25					0	0	0.00074312	0	0
MYH2	4620	broad.mit.edu	37	17	10428906	10428906	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr17:10428906C>T	uc010coi.2	-	32	4527	c.4399G>A	c.(4399-4401)GAG>AAG	p.E1467K	uc002gml.1_Intron|MYH2_uc002gmp.3_Missense_Mutation_p.E1467K|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	1467	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						TGCGTTTCCTCACATTTCTGT	0.468													11	47					0	0	0.000978159	0	0
MYH3	4621	broad.mit.edu	37	17	10543718	10543718	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr17:10543718G>A	uc002gmq.1	-	20	2435	c.2358C>T	c.(2356-2358)ATC>ATT	p.I786I		NM_002470	NP_002461	P11055	MYH3_HUMAN	myosin, heavy chain 3, skeletal muscle,	786	IQ.				muscle filament sliding|muscle organ development	cytosol|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|central_nervous_system(2)|pancreas(1)	7						GTGTCCGGGTGATTAGTTTGG	0.547													21	97					0	0	0.00188189	0	0
DNAH9	1770	broad.mit.edu	37	17	11645623	11645623	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr17:11645623C>T	uc002gne.2	+	30	6172	c.6104C>T	c.(6103-6105)TCC>TTC	p.S2035F	DNAH9_uc010coo.2_Missense_Mutation_p.S1329F	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	2035	AAA 1 (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		GAGCTTCTCTCCAAACAGGTA	0.453													16	60					0	0	0.00188189	0	0
MYOCD	93649	broad.mit.edu	37	17	12639544	12639544	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr17:12639544G>A	uc002gnn.2	+	6	781	c.482G>A	c.(481-483)GGG>GAG	p.G161E	MYOCD_uc002gno.2_Missense_Mutation_p.G161E|MYOCD_uc002gnp.1_Missense_Mutation_p.G65E	NM_153604	NP_705832	Q8IZQ8	MYCD_HUMAN	myocardin isoform 2	161	HDAC5-binding (By similarity).				cardiac muscle cell differentiation|negative regulation of cell proliferation|negative regulation of cyclin-dependent protein kinase activity|positive regulation of smooth muscle cell differentiation|positive regulation of smooth muscle contraction|positive regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation|regulation of histone acetylation|smooth muscle cell differentiation	nucleus	nucleic acid binding|RNA polymerase II transcription factor binding transcription factor activity|transcription factor binding			central_nervous_system(2)|skin(2)|ovary(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.0969)		AGCAGCGATGGGCTTTCTCCG	0.552													37	165					0	0	0.000692331	0	0
HS3ST3A1	9955	broad.mit.edu	37	17	13400102	13400102	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr17:13400102G>A	uc002gob.1	-	2	1431	c.633C>T	c.(631-633)ATC>ATT	p.I211I		NM_006042	NP_006033	Q9Y663	HS3SA_HUMAN	heparan sulfate D-glucosaminyl	211	Lumenal (Potential).					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine 3-sulfotransferase 3 activity			ovary(1)|central_nervous_system(1)	2		all_lung(20;0.114)		UCEC - Uterine corpus endometrioid carcinoma (92;0.101)		TCTCCATGGTGATCTGCCCGT	0.587													12	55					0	0	0.00136819	0	0
TBC1D28	254272	broad.mit.edu	37	17	18541689	18541689	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr17:18541689G>A	uc002gud.2	-	8	736	c.324C>T	c.(322-324)GGC>GGT	p.G108G		NM_001039397	NP_001034486	Q2M2D7	TBC28_HUMAN	TBC1 domain family, member 28	108	Rab-GAP TBC.					intracellular	Rab GTPase activator activity			ovary(1)	1						ACAACGCCCGGCCCCGCACCG	0.512													25	109					0	0	0.000878237	0	0
PHF12	57649	broad.mit.edu	37	17	27248758	27248758	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr17:27248758C>T	uc002hdg.1	-	5	1314	c.784G>A	c.(784-786)GAT>AAT	p.D262N	PHF12_uc010wbb.1_Missense_Mutation_p.D244N|PHF12_uc002hdi.1_Missense_Mutation_p.D258N|PHF12_uc002hdj.1_Missense_Mutation_p.D262N|PHF12_uc010crw.1_5'UTR|PHF12_uc002hdh.1_Missense_Mutation_p.D45N	NM_001033561	NP_001028733	Q96QT6	PHF12_HUMAN	PHD finger protein 12 isoform 1	262	Interaction with SIN3A.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	transcriptional repressor complex	protein binding|zinc ion binding			ovary(1)	1	all_cancers(5;1.95e-14)|all_epithelial(6;5e-18)|Lung NSC(42;0.01)		Epithelial(11;1.64e-05)|all cancers(11;7.47e-05)|BRCA - Breast invasive adenocarcinoma(11;9.79e-05)			CCATTGTGATCTAATTCATGC	0.408													28	52					0	0	0.000878237	0	0
SEZ6	124925	broad.mit.edu	37	17	27306729	27306729	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr17:27306729G>A	uc002hdp.2	-	3	1021	c.827C>T	c.(826-828)TCT>TTT	p.S276F	SEZ6_uc002hdm.2_RNA|SEZ6_uc010cry.1_Missense_Mutation_p.S276F|SEZ6_uc002hdq.1_Missense_Mutation_p.S151F|SEZ6_uc010crz.1_Missense_Mutation_p.S276F	NM_178860	NP_849191	Q53EL9	SEZ6_HUMAN	seizure related 6 homolog isoform 1	276	Extracellular (Potential).					integral to membrane|plasma membrane				large_intestine(1)|central_nervous_system(1)	2	Lung NSC(42;0.0137)		Epithelial(11;4.73e-06)|all cancers(11;2.91e-05)|BRCA - Breast invasive adenocarcinoma(11;8.06e-05)|OV - Ovarian serous cystadenocarcinoma(11;0.111)			AGGGTAGACAGAGATGTAGAA	0.547													16	20					0	0	0.00152264	0	0
UNC45B	146862	broad.mit.edu	37	17	33513330	33513330	+	Silent	SNP	T	C	C			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr17:33513330T>C	uc002hja.2	+	20	2645	c.2548T>C	c.(2548-2550)TTG>CTG	p.L850L	UNC45B_uc002hjb.2_Silent_p.L848L|UNC45B_uc002hjc.2_Silent_p.L848L|UNC45B_uc010cto.2_Silent_p.L769L	NM_173167	NP_775259	Q8IWX7	UN45B_HUMAN	cardiomyopathy associated 4 isoform 1	850					cell differentiation|muscle organ development	cytosol	binding			ovary(3)|central_nervous_system(2)|breast(1)	6		Ovarian(249;0.17)				AACCCAGTGGTTGGAGATCCT	0.418													10	66					0	0	0.000673444	0	0
CCL23	6368	broad.mit.edu	37	17	34340243	34340243	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr17:34340243C>T	uc002hkt.1	-	4	428	c.357G>A	c.(355-357)AAG>AAA	p.K119K	CCL23_uc002hks.1_Silent_p.K136K	NM_145898	NP_665905	P55773	CCL23_HUMAN	small inducible cytokine A23 isoform CKbeta8	119					cell-cell signaling|cellular calcium ion homeostasis|chemotaxis|G-protein coupled receptor protein signaling pathway|immune response|inflammatory response|negative regulation of cell proliferation	extracellular space	chemokine activity|heparin binding				0		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)	Treprostinil(DB00374)	AAGTTCAATTCTTCCTGGTCT	0.453													5	36					0	0	0.00116845	0	0
TBC1D3	729873	broad.mit.edu	37	17	36288288	36288289	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr17:36288288_36288289CC>AA	uc002hoo.2	+	6	531_532	c.374_375CC>AA	c.(373-375)CCC>CAA	p.P125Q	TBC1D3_uc002hop.2_RNA|TBC1D3_uc010wdj.1_Missense_Mutation_p.P45Q|TBC1D3_uc010cvf.1_Missense_Mutation_p.P125Q|TBC1D3_uc002hoq.2_Missense_Mutation_p.P125Q|TBC1D3_uc010wdk.1_Missense_Mutation_p.P186Q|uc002hpl.2_5'Flank|uc002hor.2_5'Flank	NM_032258	NP_115634	Q8IZP1	TBC3A_HUMAN	TBC1 domain family, member 3F	125	Rab-GAP TBC.					intracellular	Rab GTPase activator activity				0	Breast(7;2.97e-12)	Breast(25;0.102)|Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		TTGAAAAACCCCGGAAGATACC	0.574													10	443					0	0	6.4e-05	0	0
MLLT6	4302	broad.mit.edu	37	17	36865786	36865786	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr17:36865786C>T	uc002hqi.3	+	6	523	c.510C>T	c.(508-510)AAC>AAT	p.N170N	MLLT6_uc010wdr.1_Silent_p.N170N|MLLT6_uc010cvm.1_Silent_p.N170N	NM_005937	NP_005928	P55198	AF17_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	170	PHD-type 2.				regulation of transcription, DNA-dependent	nucleus	protein binding|zinc ion binding			breast(3)|prostate(1)|lung(1)|skin(1)	6	Breast(7;4.43e-21)					AGGTGGACAACGTCAAGTACT	0.542			T	MLL	AL								9	23					0	0	0.000978159	0	0
FBXO47	494188	broad.mit.edu	37	17	37119098	37119098	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr17:37119098C>T	uc002hrc.2	-	2	381	c.181G>A	c.(181-183)GTG>ATG	p.V61M		NM_001008777	NP_001008777	Q5MNV8	FBX47_HUMAN	F-box protein 47	61	F-box.										0						CAAACCTCACCTGACAAATAT	0.348													12	17					0	0	0.00136819	0	0
GRB7	2886	broad.mit.edu	37	17	37899717	37899717	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr17:37899717C>T	uc002hsr.2	+	6	907	c.657C>T	c.(655-657)CTC>CTT	p.L219L	GRB7_uc002hss.2_Silent_p.L219L|GRB7_uc010cwc.2_Silent_p.L219L|GRB7_uc002hst.2_Silent_p.L219L	NM_005310	NP_005301	Q14451	GRB7_HUMAN	growth factor receptor-bound protein 7	219					blood coagulation|epidermal growth factor receptor signaling pathway|leukocyte migration|negative regulation of translation|positive regulation of cell migration|stress granule assembly	cytosol|focal adhesion|stress granule	phosphatidylinositol binding|protein kinase binding|SH3/SH2 adaptor activity			lung(2)|ovary(1)|breast(1)|skin(1)	5	all_cancers(6;1.06e-93)|all_epithelial(6;2.33e-113)|Breast(7;9.37e-100)|Lung NSC(9;9.76e-10)|all_lung(9;5.34e-09)|Colorectal(19;0.000442)|Esophageal squamous(10;0.052)		UCEC - Uterine corpus endometrioid carcinoma (11;0.000126)|Epithelial(3;6.86e-60)|all cancers(3;1.65e-53)|BRCA - Breast invasive adenocarcinoma(8;2.03e-43)|STAD - Stomach adenocarcinoma(3;1.43e-12)|Colorectal(5;6.23e-08)|COAD - Colon adenocarcinoma(5;8.58e-06)|Lung(15;0.00193)|LUAD - Lung adenocarcinoma(14;0.0664)|LUSC - Lung squamous cell carcinoma(15;0.171)			ATGAAGACCTCATCCAGGTGG	0.547													19	54					0	0	0.00121646	0	0
KRT10	3858	broad.mit.edu	37	17	38978582	38978582	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr17:38978582G>A	uc002hvi.2	-	1	282	c.256C>T	c.(256-258)CGT>TGT	p.R86C	KRT10_uc010cxd.2_5'Flank|TMEM99_uc002hvj.1_Intron	NM_000421	NP_000412	P13645	K1C10_HUMAN	keratin 10	86	Head.|Gly-rich.			R -> H (in Ref. 2; CAA32649).	epidermis development		protein binding|structural constituent of epidermis				0		Breast(137;0.000301)				TAGCTTCCACGAAAGCTACCT	0.572													39	142					0	0	0.0025221	0	0
KRT12	3859	broad.mit.edu	37	17	39021199	39021199	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr17:39021199C>T	uc002hvk.2	-	3	690	c.666G>A	c.(664-666)CTG>CTA	p.L222L		NM_000223	NP_000214	Q99456	K1C12_HUMAN	keratin 12	222	Rod.|Coil 1B.				visual perception	intermediate filament	structural molecule activity			ovary(1)	1		Breast(137;0.000301)				GGCGCAGGGCCAGTTCATTCT	0.547													37	54					0	0	0.00111076	0	0
GAST	2520	broad.mit.edu	37	17	39872037	39872037	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr17:39872037C>T	uc002hxl.2	+	3	251	c.219C>T	c.(217-219)TCC>TCT	p.S73S	JUP_uc010wfs.1_Intron	NM_000805	NP_000796	P01350	GAST_HUMAN	gastrin preproprotein	73						extracellular region	hormone activity				0		Breast(137;0.000307)	BRCA - Breast invasive adenocarcinoma(4;0.0677)			CAGACCCGTCCAAGAAGCAGG	0.562													14	98					0	0	0.000422831	0	0
KAT2A	2648	broad.mit.edu	37	17	40271297	40271297	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr17:40271297C>T	uc002hyx.2	-	6	1099	c.1039G>A	c.(1039-1041)GAG>AAG	p.E347K		NM_021078	NP_066564	Q92830	KAT2A_HUMAN	general control of amino acid synthesis 5-like	347					chromatin remodeling|histone deubiquitination|interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	Ada2/Gcn5/Ada3 transcription activator complex|STAGA complex|transcription factor TFTC complex	H3 histone acetyltransferase activity|histone deacetylase binding|protein binding|transcription coactivator activity			upper_aerodigestive_tract(1)|lung(1)	2						GTCCTCTTCTCGGGCACCAAT	0.547													24	97					0	0	0.000878237	0	0
ITGA2B	3674	broad.mit.edu	37	17	42466799	42466799	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr17:42466799C>T	uc002igt.1	-	1	75	c.43G>A	c.(43-45)GAG>AAG	p.E15K		NM_000419	NP_000410	P08514	ITA2B_HUMAN	integrin alpha 2b preproprotein	15					axon guidance|integrin-mediated signaling pathway|platelet activation|platelet degranulation	integrin complex|platelet alpha granule membrane	identical protein binding|receptor activity			ovary(2)|lung(1)	3		Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.191)	Tirofiban(DB00775)	AGCACCCACTCCAGAAGCCAG	0.607													11	38					0	0	0.00136819	0	0
EFTUD2	9343	broad.mit.edu	37	17	42957932	42957932	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr17:42957932C>T	uc002ihn.2	-	8	870	c.609G>A	c.(607-609)ATG>ATA	p.M203I	EFTUD2_uc010wje.1_Missense_Mutation_p.M168I|EFTUD2_uc010wjf.1_Missense_Mutation_p.M193I	NM_004247	NP_004238	Q15029	U5S1_HUMAN	elongation factor Tu GTP binding domain	203						Cajal body|catalytic step 2 spliceosome|cytoplasm|nuclear speck	GTP binding|GTPase activity|protein binding			ovary(1)	1		Prostate(33;0.109)				CTGGAGTGTCCATGATATTGA	0.453													23	56					0	0	0.000586117	0	0
HEXIM1	10614	broad.mit.edu	37	17	43226788	43226788	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr17:43226788G>A	uc002iig.2	+	1	2105	c.231G>A	c.(229-231)CAG>CAA	p.Q77Q		NM_006460	NP_006451	O94992	HEXI1_HUMAN	hexamethylene bis-acetamide inducible 1	77					negative regulation of cyclin-dependent protein kinase activity|negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|nucleus	cyclin-dependent protein kinase inhibitor activity|protein binding|snRNA binding			ovary(1)	1						TGCAGACCCAGGCCTGTCCAG	0.662											OREG0024474	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	11	12					0	0	0.00136819	0	0
CRHR1	1394	broad.mit.edu	37	17	43906643	43906643	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr17:43906643C>T	uc010dap.2	+	5	655	c.390C>T	c.(388-390)TCC>TCT	p.S130S	CRHR1_uc010wjx.1_5'UTR|CRHR1_uc002ijp.2_Silent_p.S29S|CRHR1_uc002ijm.2_Silent_p.S130S|CRHR1_uc002ijn.2_Silent_p.S90S|CRHR1_uc010dar.2_Silent_p.S130S|CRHR1_uc010dao.2_Silent_p.S29S|CRHR1_uc010daq.2_5'UTR|CRHR1_uc010das.1_RNA|CRHR1_uc002ijo.1_RNA	NM_001145146	NP_001138618	P34998	CRFR1_HUMAN	corticotropin releasing hormone receptor 1	130	Helical; Name=1; (Potential).				female pregnancy|immune response|parturition	integral to plasma membrane	corticotrophin-releasing factor receptor activity|protein binding			lung(3)	3	Colorectal(2;0.0416)			BRCA - Breast invasive adenocarcinoma(366;0.161)		ACTGTATCTCCCTGGTGGCCC	0.582													8	25					0	0	0.000978159	0	0
HOXB1	3211	broad.mit.edu	37	17	46607775	46607775	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr17:46607775C>T	uc002ink.1	-	1	498	c.492G>A	c.(490-492)AAG>AAA	p.K164K		NM_002144	NP_002135	P14653	HXB1_HUMAN	homeobox B1	164						nucleus	protein domain specific binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						AGGGTGTTTCCTTGTCCTCGG	0.597													16	28					0	0	0.000422831	0	0
COL1A1	1277	broad.mit.edu	37	17	48271376	48271376	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr17:48271376G>A	uc002iqm.2	-	25	1821	c.1695C>T	c.(1693-1695)CCC>CCT	p.P565P		NM_000088	NP_000079	P02452	CO1A1_HUMAN	alpha 1 type I collagen preproprotein	565	Triple-helical region.				axon guidance|blood vessel development|collagen biosynthetic process|collagen fibril organization|embryonic skeletal system development|leukocyte migration|platelet activation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell migration|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription, DNA-dependent|protein localization to nucleus|sensory perception of sound|skin morphogenesis|tooth mineralization|visual perception	collagen type I|extracellular space|plasma membrane	identical protein binding|platelet-derived growth factor binding		COL1A1/PDGFB(372)	soft_tissue(372)|central_nervous_system(7)|skin(1)|breast(1)|pancreas(1)	382					Collagenase(DB00048)|Palifermin(DB00039)	CTGGGGGTCCGGGGCGACCAT	0.612			T	PDGFB|USP6	dermatofibrosarcoma protuberans|aneurysmal bone cyst 		Osteogenesis imperfecta						18	40					0	0	0.000958276	0	0
COL1A1	1277	broad.mit.edu	37	17	48274591	48274591	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr17:48274591C>T	uc002iqm.2	-	10	826	c.700G>A	c.(700-702)GAA>AAA	p.E234K		NM_000088	NP_000079	P02452	CO1A1_HUMAN	alpha 1 type I collagen preproprotein	234	Triple-helical region.				axon guidance|blood vessel development|collagen biosynthetic process|collagen fibril organization|embryonic skeletal system development|leukocyte migration|platelet activation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell migration|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription, DNA-dependent|protein localization to nucleus|sensory perception of sound|skin morphogenesis|tooth mineralization|visual perception	collagen type I|extracellular space|plasma membrane	identical protein binding|platelet-derived growth factor binding		COL1A1/PDGFB(372)	soft_tissue(372)|central_nervous_system(7)|skin(1)|breast(1)|pancreas(1)	382					Collagenase(DB00048)|Palifermin(DB00039)	TTTCCAGCTTCCCCCTGAGAG	0.597			T	PDGFB|USP6	dermatofibrosarcoma protuberans|aneurysmal bone cyst 		Osteogenesis imperfecta						35	46					0	0	0.00111076	0	0
MYCBPAP	84073	broad.mit.edu	37	17	48601050	48601050	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr17:48601050C>T	uc010wmr.1	+	12	1831	c.1669C>T	c.(1669-1671)CAT>TAT	p.H557Y	MYCBPAP_uc002iqz.2_RNA	NM_032133	NP_115509	Q8TBZ2	MYBPP_HUMAN	Myc-binding protein-associated protein	520					cell differentiation|multicellular organismal development|spermatogenesis|synaptic transmission	cytoplasm|membrane	protein binding			urinary_tract(2)|skin(2)|ovary(1)|pancreas(1)	6	Breast(11;1.23e-18)		BRCA - Breast invasive adenocarcinoma(22;1.23e-09)			GTTTCGAACCCATCCTACTCT	0.473													22	45					0	0	0.000586117	0	0
SPATA20	64847	broad.mit.edu	37	17	48628483	48628483	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr17:48628483A>G	uc002irf.2	+	11	1601	c.1460A>G	c.(1459-1461)AAG>AGG	p.K487R	SPATA20_uc002irc.2_Missense_Mutation_p.K154R|SPATA20_uc002ire.2_Missense_Mutation_p.K443R|SPATA20_uc002ird.2_Missense_Mutation_p.K503R|SPATA20_uc002irg.2_RNA	NM_022827	NP_073738	Q8TB22	SPT20_HUMAN	spermatogenesis associated 20	487					cell differentiation|mannose metabolic process|multicellular organismal development|spermatogenesis	extracellular region	mannose-6-phosphate isomerase activity|protein binding				0	Breast(11;1.23e-18)		BRCA - Breast invasive adenocarcinoma(22;9.38e-09)			GGGCTGGAGAAGCTCTTCCAG	0.627											OREG0024568	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	9	20					0	0	0.000442599	0	0
ABCC3	8714	broad.mit.edu	37	17	48733268	48733268	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr17:48733268C>T	uc002isl.2	+	2	201	c.121C>T	c.(121-123)CCC>TCC	p.P41S	ABCC3_uc002isk.3_Missense_Mutation_p.P41S	NM_003786	NP_003777	O15438	MRP3_HUMAN	ATP-binding cassette, sub-family C, member 3	41	Helical; Name=1; (By similarity).				bile acid metabolic process	integral to plasma membrane|membrane fraction	ATP binding|bile acid-exporting ATPase activity|organic anion transmembrane transporter activity			skin(3)|central_nervous_system(1)	4			BRCA - Breast invasive adenocarcinoma(22;3.05e-09)		Glibenclamide(DB01016)	GGCCTGGGTGCCCTGCATCTA	0.577													27	26					0	0	0.00127121	0	0
WFIKKN2	124857	broad.mit.edu	37	17	48917681	48917681	+	Nonsense_Mutation	SNP	G	A	A	rs147499684		TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr17:48917681G>A	uc002isv.3	+	2	1726	c.1032G>A	c.(1030-1032)TGG>TGA	p.W344*	WFIKKN2_uc010dbu.2_Nonsense_Mutation_p.W251*	NM_175575	NP_783165	Q8TEU8	WFKN2_HUMAN	WFIKKN2 protein	344	BPTI/Kunitz inhibitor 1.					extracellular region	metalloendopeptidase inhibitor activity|protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|skin(1)	3			BRCA - Breast invasive adenocarcinoma(22;1.09e-08)			AGACCCGCTGGCACTTCGATG	0.627													14	52					0	0	0.000308642	0	0
ANKFN1	162282	broad.mit.edu	37	17	54450127	54450127	+	Missense_Mutation	SNP	A	C	C			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr17:54450127A>C	uc002iun.1	+	6	766	c.731A>C	c.(730-732)AAA>ACA	p.K244T		NM_153228	NP_694960	Q8N957	ANKF1_HUMAN	ankyrin-repeat and fibronectin type III domain	244										large_intestine(1)|ovary(1)	2						AACACAGAGAAAGAGAAGCAG	0.502													30	92					0	0	0.00058488	0	0
OR4D1	26689	broad.mit.edu	37	17	56233033	56233033	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr17:56233033C>T	uc010wno.1	+	1	519	c.519C>T	c.(517-519)ATC>ATT	p.I173I	MSX2P1_uc002ivn.2_5'Flank	NM_012374	NP_036506	Q15615	OR4D1_HUMAN	olfactory receptor, family 4, subfamily D,	173	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						GCCCCAATATCCTAGATAACT	0.542													46	56					0	0	0.000781405	0	0
MPO	4353	broad.mit.edu	37	17	56350778	56350778	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr17:56350778C>T	uc002ivu.1	-	9	1795	c.1618G>A	c.(1618-1620)GAA>AAA	p.E540K		NM_000250	NP_000241	P05164	PERM_HUMAN	myeloperoxidase	540					anti-apoptosis|hydrogen peroxide catabolic process|low-density lipoprotein particle remodeling	extracellular space|lysosome|nucleus|stored secretory granule	chromatin binding|heme binding|heparin binding|peroxidase activity			ovary(2)|large_intestine(1)|pancreas(1)	4					Cefdinir(DB00535)	TGCTTACCTTCCAGCACGACC	0.607													39	62					0	0	0.000953801	0	0
TEX14	56155	broad.mit.edu	37	17	56679191	56679191	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr17:56679191C>T	uc010dcz.1	-	13	1790	c.1672G>A	c.(1672-1674)GAA>AAA	p.E558K	TEX14_uc002iwr.1_Missense_Mutation_p.E552K|TEX14_uc002iws.1_Missense_Mutation_p.E552K|TEX14_uc010dda.1_Missense_Mutation_p.E332K	NM_198393	NP_938207	Q8IWB6	TEX14_HUMAN	testis expressed sequence 14 isoform a	558						cytoplasm	ATP binding|protein kinase activity			stomach(4)|lung(3)|breast(3)|ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)|skin(1)|pancreas(1)	17	Medulloblastoma(34;0.127)|all_neural(34;0.237)					TCTATGATTTCCATGTCAGGT	0.453													35	50					0	0	0.000953801	0	0
PPM1E	22843	broad.mit.edu	37	17	57057591	57057591	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr17:57057591G>A	uc002iwx.2	+	7	1594	c.1467G>A	c.(1465-1467)AGG>AGA	p.R489R	PPM1E_uc010ddd.2_Silent_p.R252R	NM_014906	NP_055721	Q8WY54	PPM1E_HUMAN	protein phosphatase 1E	498					protein dephosphorylation	cytoplasm|nucleolus|protein serine/threonine phosphatase complex	metal ion binding|protein serine/threonine phosphatase activity			breast(3)|lung(1)|skin(1)	5	Medulloblastoma(34;0.127)|all_neural(34;0.237)		BRCA - Breast invasive adenocarcinoma(1;5.76e-11)			TATTCCTGAGGGACATGAACA	0.443													16	19					0	0	0.000566183	0	0
C17orf71	55181	broad.mit.edu	37	17	57287525	57287525	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr17:57287525C>T	uc002ixi.2	+	1	155	c.113C>T	c.(112-114)CCG>CTG	p.P38L		NM_018149	NP_060619	Q8ND04	SMG8_HUMAN	SMG8 protein	38					nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of protein kinase activity		protein binding				0	all_neural(34;0.0837)|Medulloblastoma(34;0.0922)					GCTGGCGGACCGGAGCCTCCA	0.602													14	26					0	0	0.000566183	0	0
MAP3K3	4215	broad.mit.edu	37	17	61723433	61723433	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr17:61723433C>G	uc002jbg.2	+	3	485	c.166C>G	c.(166-168)CGA>GGA	p.R56G	MAP3K3_uc002jbe.2_Missense_Mutation_p.R87G|MAP3K3_uc002jbf.2_Missense_Mutation_p.R87G|MAP3K3_uc002jbh.2_Missense_Mutation_p.R87G|MAP3K3_uc010wpo.1_5'UTR|MAP3K3_uc010wpp.1_Missense_Mutation_p.R56G	NM_002401	NP_002392	Q99759	M3K3_HUMAN	mitogen-activated protein kinase kinase kinase 3	56	OPR.				MAPKKK cascade|positive regulation of I-kappaB kinase/NF-kappaB cascade|protein autophosphorylation	cytosol	ATP binding|MAP kinase kinase kinase activity|metal ion binding|protein binding			lung(3)|upper_aerodigestive_tract(1)|large_intestine(1)|breast(1)	6						CGGGGAGAGGCGGTAAGTCTG	0.473													7	32					0	0	0.00198382	0	0
SCN4A	6329	broad.mit.edu	37	17	62045702	62045702	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr17:62045702G>A	uc002jds.1	-	6	794	c.717C>T	c.(715-717)ATC>ATT	p.I239I		NM_000334	NP_000325	P35499	SCN4A_HUMAN	voltage-gated sodium channel type 4 alpha	239	I.				muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(1)|pancreas(1)|skin(1)	3					Lamotrigine(DB00555)	GGGCCCCCACGATCGTCTTCA	0.602													27	53					0	0	0.00127121	0	0
TEX2	55852	broad.mit.edu	37	17	62290114	62290114	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr17:62290114G>A	uc002jec.2	-	2	1637	c.1464C>T	c.(1462-1464)ATC>ATT	p.I488I	TEX2_uc002jed.2_Silent_p.I488I|TEX2_uc002jee.2_Silent_p.I488I	NM_018469	NP_060939	Q8IWB9	TEX2_HUMAN	testis expressed sequence 2	488	Helical; (Potential).				signal transduction|sphingolipid metabolic process	integral to membrane				ovary(1)	1			BRCA - Breast invasive adenocarcinoma(8;1.33e-10)	READ - Rectum adenocarcinoma(1115;0.0689)		GGAGGGGGAGGATGAGGTACA	0.512													24	41					0	0	0.000586117	0	0
OTOP3	347741	broad.mit.edu	37	17	72937621	72937621	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr17:72937621G>A	uc010wrr.1	+	2	207	c.207G>A	c.(205-207)CTG>CTA	p.L69L	OTOP3_uc010wrq.1_Silent_p.L51L	NM_178233	NP_839947	Q7RTS5	OTOP3_HUMAN	otopetrin 3	69						integral to membrane|intracellular	zinc ion binding			ovary(1)	1	all_lung(278;0.151)|Lung NSC(278;0.185)					AGTCCTGGCTGGTGAGGCATT	0.662													9	24					0	0	0.00244969	0	0
KIAA0195	9772	broad.mit.edu	37	17	73490710	73490710	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr17:73490710G>A	uc002jnz.3	+	19	2685	c.2410G>A	c.(2410-2412)GGG>AGG	p.G804R	KIAA0195_uc010wsa.1_Missense_Mutation_p.G814R|KIAA0195_uc010wsb.1_Missense_Mutation_p.G444R|KIAA0195_uc002job.3_5'Flank	NM_014738	NP_055553	Q12767	K0195_HUMAN	hypothetical protein LOC9772	804					ATP biosynthetic process|cation transport	integral to membrane	ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism			ovary(1)	1	all_cancers(13;3.15e-09)|all_epithelial(9;5.94e-10)|Breast(9;1.85e-09)|all_lung(278;0.246)		all cancers(21;5.01e-07)|Epithelial(20;5e-06)|Lung(188;0.0809)|LUSC - Lung squamous cell carcinoma(166;0.154)			GCCTGAAGAAGGGATCGGGGA	0.597													5	28					0	0	0.00116845	0	0
CCDC40	55036	broad.mit.edu	37	17	78032373	78032373	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr17:78032373G>A	uc010dht.2	+	8	1267	c.1240G>A	c.(1240-1242)GAC>AAC	p.D414N	CCDC40_uc010wub.1_Missense_Mutation_p.D414N|CCDC40_uc002jxm.3_Missense_Mutation_p.D197N	NM_017950	NP_060420	Q4G0X9	CCD40_HUMAN	coiled-coil domain containing 40	414	Potential.				axonemal dynein complex assembly|ciliary cell motility|cilium movement involved in determination of left/right asymmetry|flagellar cell motility	cilium|cytoplasm				ovary(3)	3	all_neural(118;0.167)		OV - Ovarian serous cystadenocarcinoma(97;0.0292)|BRCA - Breast invasive adenocarcinoma(99;0.149)			CATGCGTGACGACATCCGCGT	0.562													9	40					0	0	0.000442599	0	0
EPB41L3	23136	broad.mit.edu	37	18	5434071	5434071	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr18:5434071G>A	uc002kmt.1	-	7	741	c.655C>T	c.(655-657)CCC>TCC	p.P219S	EPB41L3_uc010wzh.1_Missense_Mutation_p.P219S|EPB41L3_uc002kmu.1_Missense_Mutation_p.P219S|EPB41L3_uc010dkq.1_Missense_Mutation_p.P110S|EPB41L3_uc010dks.1_Missense_Mutation_p.P241S|EPB41L3_uc002kmv.1_Missense_Mutation_p.P110S	NM_012307	NP_036439	Q9Y2J2	E41L3_HUMAN	erythrocyte membrane protein band 4.1-like 3	219	FERM.				cortical actin cytoskeleton organization	cell-cell junction|cytoplasm|cytoskeleton|extrinsic to membrane	actin binding|structural molecule activity			ovary(5)	5						AAGGAGCAGGGCAGCCTTCCG	0.527													16	40					0	0	0.000566183	0	0
KIAA0802	23255	broad.mit.edu	37	18	8718506	8718506	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr18:8718506C>T	uc002knr.2	+	3	200	c.58C>T	c.(58-60)CGG>TGG	p.R20W	KIAA0802_uc002knq.2_Missense_Mutation_p.R20W	NM_015210	NP_056025	Q9Y4B5	CC165_HUMAN	hypothetical protein LOC23255	371	Potential.										0						GCAGGAACTTCGGCGAGAACT	0.488													17	42					0	0	0.00152264	0	0
FAM38B	63895	broad.mit.edu	37	18	10691382	10691382	+	Splice_Site	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr18:10691382C>T	uc002kor.3	-	6	863	c.723_splice	c.e6-1	p.R241_splice	FAM38B_uc002koq.2_Splice_Site_p.R139_splice	NM_022068	NP_071351	Q9H5I5	PIEZ2_HUMAN	family with sequence similarity 38, member B							integral to membrane	ion channel activity			ovary(1)	1						GCTGAATTTCCTAAAATGTAA	0.418													7	19					0	0	0.000157383	0	0
SEH1L	81929	broad.mit.edu	37	18	12982560	12982560	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr18:12982560C>T	uc002krr.2	+	7	943	c.805C>T	c.(805-807)CAT>TAT	p.H269Y	SEH1L_uc002krq.2_Missense_Mutation_p.H269Y	NM_031216	NP_112493	Q96EE3	SEH1_HUMAN	sec13-like protein isoform 2	269					attachment of spindle microtubules to kinetochore involved in mitotic sister chromatid segregation|carbohydrate metabolic process|cell division|glucose transport|mitotic metaphase plate congression|mitotic prometaphase|mRNA transport|nuclear pore organization|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	condensed chromosome kinetochore|cytosol|Nup107-160 complex					0						GTTTGAAATCCATATAGTGGC	0.378													11	42					0	0	0.000978159	0	0
CXADRP3	440224	broad.mit.edu	37	18	14478151	14478151	+	RNA	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr18:14478151G>A	uc010xai.1	-	3		c.1413C>T				NR_024076				Homo sapiens cDNA clone IMAGE:30390722, containing frame-shift errors.												0						AAGCACAGATGAGACGTATGG	0.398													6	25					0	0	0.00116845	0	0
C18orf45	85019	broad.mit.edu	37	18	20936596	20936596	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr18:20936596G>A	uc002kuf.2	-	12	742	c.633C>T	c.(631-633)TTC>TTT	p.F211F	C18orf45_uc010xaq.1_RNA|C18orf45_uc010xar.1_RNA|C18orf45_uc002kug.2_RNA|C18orf45_uc002kuh.2_RNA	NM_032933	NP_116322	Q24JQ0	CR045_HUMAN	hypothetical protein LOC85019	211	Helical; (Potential).					integral to membrane					0	all_cancers(21;0.000238)|all_epithelial(16;5.29e-06)|Lung NSC(20;0.00925)|Colorectal(14;0.0202)|all_lung(20;0.0255)|Ovarian(20;0.127)					AGAAGTACAGGAATGGGAAGT	0.522													5	21					0	0	0.000602214	0	0
DSG1	1828	broad.mit.edu	37	18	28934957	28934957	+	Missense_Mutation	SNP	T	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr18:28934957T>A	uc002kwp.2	+	15	3010	c.2798T>A	c.(2797-2799)ATG>AAG	p.M933K	DSG1_uc010xbp.1_Missense_Mutation_p.M292K	NM_001942	NP_001933	Q02413	DSG1_HUMAN	desmoglein 1 preproprotein	933	Desmoglein repeat 5.|Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|cell-cell junction assembly|cellular component disassembly involved in apoptosis|homophilic cell adhesion|protein stabilization	cytosol|desmosome|integral to membrane|internal side of plasma membrane	calcium ion binding|gamma-catenin binding|toxin binding			skin(3)|ovary(2)|central_nervous_system(2)	7			OV - Ovarian serous cystadenocarcinoma(10;0.00559)			ACTTCCGGCATGATAGGTAGT	0.483													41	159					0	0	0.000680045	0	0
MEP1B	4225	broad.mit.edu	37	18	29793396	29793396	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr18:29793396G>A	uc002kxj.3	+	11	1500	c.1453G>A	c.(1453-1455)GAT>AAT	p.D485N		NM_005925	NP_005916	Q16820	MEP1B_HUMAN	meprin A beta precursor	485	Extracellular (Potential).|MATH.				digestion|proteolysis	extracellular space|integral to plasma membrane	metalloendopeptidase activity|zinc ion binding			ovary(2)	2						TGGAGCCAATGATGATCAATT	0.408													7	22					0	0	0.000157383	0	0
ELP2	55250	broad.mit.edu	37	18	33744542	33744542	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr18:33744542C>T	uc002kzk.1	+	18	1876	c.1866C>T	c.(1864-1866)TTC>TTT	p.F622F	ELP2_uc010xcg.1_Silent_p.F687F|ELP2_uc002kzl.1_RNA|ELP2_uc002kzm.1_Silent_p.F596F|ELP2_uc010xch.1_Silent_p.F617F|ELP2_uc002kzn.1_Silent_p.F552F|ELP2_uc002kzo.1_Silent_p.F552F	NM_018255	NP_060725	Q6IA86	ELP2_HUMAN	elongator protein 2	622	WD 11.				regulation of transcription from RNA polymerase II promoter	Golgi apparatus|transcription elongation factor complex				breast(2)|ovary(1)|skin(1)	4						AGATGGCCTTCTCACCTAATG	0.423													15	30					0	0	0.000422831	0	0
SLC14A1	6563	broad.mit.edu	37	18	43319553	43319553	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr18:43319553C>T	uc010xcn.1	+	9	1191	c.872C>T	c.(871-873)TCT>TTT	p.S291F	SLC14A1_uc010dnk.2_Missense_Mutation_p.S347F|SLC14A1_uc002lbf.3_Missense_Mutation_p.S291F|SLC14A1_uc002lbg.3_RNA|SLC14A1_uc010xco.1_Missense_Mutation_p.S186F|SLC14A1_uc002lbh.3_Missense_Mutation_p.S183F|SLC14A1_uc002lbi.3_Missense_Mutation_p.S159F|SLC14A1_uc002lbj.3_Missense_Mutation_p.S347F|SLC14A1_uc002lbk.3_Missense_Mutation_p.S291F	NM_001146036	NP_001139508	Q13336	UT1_HUMAN	solute carrier family 14 (urea transporter),	291	Helical; (Potential).		S -> P (in Jk(null)).			integral to plasma membrane	urea transmembrane transporter activity			central_nervous_system(1)|pancreas(1)	2						TTCAACAGCTCTCTGGCCTGC	0.557													13	38					0	0	0.00244969	0	0
DCC	1630	broad.mit.edu	37	18	50985607	50985607	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr18:50985607G>A	uc002lfe.1	+	24	3985	c.3398G>A	c.(3397-3399)CGG>CAG	p.R1133Q	DCC_uc010dpf.1_Missense_Mutation_p.R768Q	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	1133	Cytoplasmic (Potential).				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		CATAGGAAACGGGCCACCCAC	0.443													7	20					0	0	0.000157383	0	0
ZNF532	55205	broad.mit.edu	37	18	56586400	56586400	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr18:56586400C>T	uc002lho.2	+	4	1428	c.881C>T	c.(880-882)TCG>TTG	p.S294L	ZNF532_uc002lhp.2_Missense_Mutation_p.S292L|ZNF532_uc010xeg.1_Missense_Mutation_p.S292L|ZNF532_uc002lhr.2_Missense_Mutation_p.S292L|ZNF532_uc002lhs.2_Missense_Mutation_p.S292L	NM_018181	NP_060651	Q9HCE3	ZN532_HUMAN	zinc finger protein 532	294					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)|skin(1)	2						GTGGCCAATTCGAGGGAATCC	0.532													19	60					0	0	0.000958276	0	0
CCBE1	147372	broad.mit.edu	37	18	57105378	57105378	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr18:57105378C>T	uc002lib.2	-	10	1022	c.952G>A	c.(952-954)GGG>AGG	p.G318R	CCBE1_uc010dpq.2_Missense_Mutation_p.G47R|CCBE1_uc002lia.2_Missense_Mutation_p.G171R	NM_133459	NP_597716	Q6UXH8	CCBE1_HUMAN	collagen and calcium binding EGF domains 1	318	Collagen-like 2.				lymphangiogenesis|sprouting angiogenesis|venous blood vessel morphogenesis	collagen	calcium ion binding			skin(2)|ovary(1)	3		Colorectal(73;0.175)				CCTCTCTCCCCCTAAAAACAG	0.517													9	15					0	0	0.000274275	0	0
RNF152	220441	broad.mit.edu	37	18	59483351	59483351	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr18:59483351C>T	uc002lih.1	-	2	758	c.346G>A	c.(346-348)GAC>AAC	p.D116N		NM_173557	NP_775828	Q8N8N0	RN152_HUMAN	ring finger protein 152	116					apoptosis|protein K48-linked ubiquitination	integral to membrane|lysosomal membrane	ubiquitin-protein ligase activity|zinc ion binding			breast(1)	1		Colorectal(73;0.186)				CAGCCCATGTCTCCGGGCAGC	0.637													10	33					0	0	0.000978159	0	0
SERPINB4	6318	broad.mit.edu	37	18	61310397	61310397	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr18:61310397G>A	uc002ljf.2	-	3	306	c.220C>T	c.(220-222)CAT>TAT	p.H74Y	SERPINB4_uc002lje.2_Missense_Mutation_p.H74Y|SERPINB4_uc002ljg.2_Intron	NM_002974	NP_002965	P48594	SPB4_HUMAN	serine (or cysteine) proteinase inhibitor, clade	74					immune response|regulation of proteolysis	cytoplasm|extracellular region	protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|lung(1)	3						TGACTCACATGATATGTTGCA	0.408													4	0					0	0	0.00116845	0	0
SERPINB4	6318	broad.mit.edu	37	18	61328448	61328448	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr18:61328448C>T	uc002ljg.2	-	1	29	c.3G>A	c.(1-3)ATG>ATA	p.M1I	SERPINB3_uc002lji.2_Missense_Mutation_p.M1I|SERPINB3_uc010dqa.2_Missense_Mutation_p.M1I|SERPINB3_uc010dqb.2_Missense_Mutation_p.M1I|SERPINB3_uc010dqc.2_Missense_Mutation_p.M1I			P48594	SPB4_HUMAN	SubName: Full=Squamous cell carcinoma antigen 2;	1					immune response|regulation of proteolysis	cytoplasm|extracellular region	protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|lung(1)	3						TGAGTGAATTCATGGTGAACT	0.378													8	21					0	0	0.000442599	0	0
CCDC102B	79839	broad.mit.edu	37	18	66541933	66541933	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr18:66541933G>A	uc002lkk.2	+	7	1187	c.964G>A	c.(964-966)GAT>AAT	p.D322N	CCDC102B_uc002lki.2_Missense_Mutation_p.D322N|CCDC102B_uc002lkj.1_Missense_Mutation_p.D322N	NM_001093729	NP_001087198	Q68D86	C102B_HUMAN	coiled-coil domain containing 102B	322	Potential.									ovary(1)|lung(1)|skin(1)	3		Esophageal squamous(42;0.0559)|Colorectal(73;0.0604)				TCAACATAATGATGAAATGCA	0.363													5	25					0	0	0.000602214	0	0
NFATC1	4772	broad.mit.edu	37	18	77170939	77170939	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr18:77170939C>T	uc010xfg.1	+	2	1117	c.664C>T	c.(664-666)CCC>TCC	p.P222S	NFATC1_uc002lnc.1_Missense_Mutation_p.P222S|NFATC1_uc010xff.1_Missense_Mutation_p.P222S|NFATC1_uc002lnd.2_Missense_Mutation_p.P222S|NFATC1_uc002lne.2_Intron|NFATC1_uc010xfh.1_Missense_Mutation_p.P222S|NFATC1_uc010xfi.1_Missense_Mutation_p.P209S|NFATC1_uc010xfj.1_Intron|NFATC1_uc002lnf.2_Missense_Mutation_p.P209S|NFATC1_uc002lng.2_Missense_Mutation_p.P209S|NFATC1_uc010xfk.1_Missense_Mutation_p.P209S	NM_006162	NP_006153	O95644	NFAC1_HUMAN	nuclear factor of activated T-cells, cytosolic	222	3 X SP repeats.				intracellular signal transduction|positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|nucleus	FK506 binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			large_intestine(1)|ovary(1)	2		Esophageal squamous(42;0.0157)|Melanoma(33;0.144)		OV - Ovarian serous cystadenocarcinoma(15;3.73e-07)|BRCA - Breast invasive adenocarcinoma(31;0.0257)		GGAGGGCTTTCCCCGCGGGCT	0.706													17	35					0	0	0.00074312	0	0
TXNL4A	10907	broad.mit.edu	37	18	77748263	77748263	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr18:77748263C>T	uc002lnp.2	-	1	270	c.130G>A	c.(130-132)GTC>ATC	p.V44I	TXNL4A_uc002lnr.2_Missense_Mutation_p.V44I|TXNL4A_uc002lnq.2_RNA|TXNL4A_uc010drf.2_RNA|TXNL4A_uc010drg.2_Intron	NM_006701	NP_006692	P83876	TXN4A_HUMAN	thioredoxin-like 4A	44					cell division|mitosis|spliceosome assembly	nucleoplasm|spliceosomal complex	protein binding				0		all_cancers(4;1.15e-12)|all_epithelial(4;8.61e-09)|all_lung(4;0.00366)|Lung NSC(4;0.00683)|Esophageal squamous(42;0.0212)|Ovarian(4;0.0646)|Melanoma(33;0.2)		OV - Ovarian serous cystadenocarcinoma(15;7.36e-07)|BRCA - Breast invasive adenocarcinoma(31;0.0249)		CTGTACAGGACCTCGTCCATC	0.682													4	8					0	0	0.00116845	0	0
APC2	10297	broad.mit.edu	37	19	1460850	1460850	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr19:1460850C>T	uc002lsr.1	+	12	1723	c.1515C>T	c.(1513-1515)CTC>CTT	p.L505L	APC2_uc002lss.1_Silent_p.L87L|APC2_uc002lst.1_Silent_p.L505L|APC2_uc002lsu.1_Silent_p.L504L|uc002lsv.2_5'Flank	NM_005883	NP_005874	O95996	APC2_HUMAN	adenomatosis polyposis coli 2	505	ARM 2.				negative regulation of canonical Wnt receptor signaling pathway|negative regulation of catenin import into nucleus|Wnt receptor signaling pathway	actin filament|catenin complex|cytoplasmic microtubule|Golgi membrane|lamellipodium membrane|perinuclear region of cytoplasm	beta-catenin binding|microtubule binding			breast(3)|pancreas(1)	4		Acute lymphoblastic leukemia(61;3.02e-13)|all_hematologic(61;4.32e-09)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GTGAGGAGCTCCACCAGGTAC	0.697													10	19					0	0	0.000442599	0	0
ATP8B3	148229	broad.mit.edu	37	19	1789022	1789022	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr19:1789022G>A	uc002ltw.2	-	24	3177	c.2943C>T	c.(2941-2943)CTC>CTT	p.L981L	ATP8B3_uc002ltv.2_Silent_p.L944L|ATP8B3_uc002ltx.2_RNA	NM_138813	NP_620168	O60423	AT8B3_HUMAN	ATPase, class I, type 8B, member 3	981	Cytoplasmic (Potential).				ATP biosynthetic process		ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GCACCAGCAGGAGGCGCTGCA	0.637													4	15					0	0	0.00024832	0	0
REXO1	57455	broad.mit.edu	37	19	1825933	1825933	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr19:1825933C>T	uc002lua.3	-	3	2016	c.1921G>A	c.(1921-1923)GAA>AAA	p.E641K		NM_020695	NP_065746	Q8N1G1	REXO1_HUMAN	transcription elongation factor B polypeptide 3	641						nucleus	exonuclease activity|nucleic acid binding				0		Ovarian(11;1.78e-06)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CTCTTCTCTTCCTTGGGGGGC	0.597													25	38					0	0	0.000586117	0	0
TMPRSS9	360200	broad.mit.edu	37	19	2408432	2408432	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr19:2408432C>T	uc010xgx.1	+	7	819	c.819C>T	c.(817-819)GCC>GCT	p.A273A	TMPRSS9_uc002lvv.1_Silent_p.A307A	NM_182973	NP_892018	Q7Z410	TMPS9_HUMAN	transmembrane protease, serine 9	273	Extracellular (Potential).|Peptidase S1 1.				proteolysis	integral to plasma membrane	serine-type endopeptidase activity			ovary(1)|central_nervous_system(1)	2				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CCGTGCGGGCCCAGGTGGTCC	0.667													30	64					0	0	0.0024448	0	0
ZNF77	58492	broad.mit.edu	37	19	2939291	2939291	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr19:2939291G>A	uc002lws.3	-	2	249	c.118C>T	c.(118-120)CTT>TTT	p.L40F		NM_021217	NP_067040	Q15935	ZNF77_HUMAN	zinc finger protein 77	40	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|zinc ion binding			ovary(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|GBM - Glioblastoma multiforme(1328;2.11e-07)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|Lung(535;0.174)|STAD - Stomach adenocarcinoma(1328;0.18)		AAGGAGGCAAGGTTCCTGCAG	0.562													20	35					0	0	0.000958276	0	0
TJP3	27134	broad.mit.edu	37	19	3731984	3731984	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr19:3731984C>T	uc010xhv.1	+	5	722	c.722C>T	c.(721-723)TCG>TTG	p.S241L	TJP3_uc010xhs.1_Missense_Mutation_p.S222L|TJP3_uc010xht.1_Missense_Mutation_p.S186L|TJP3_uc010xhu.1_Missense_Mutation_p.S231L|TJP3_uc010xhw.1_Missense_Mutation_p.S241L	NM_014428	NP_055243	O95049	ZO3_HUMAN	tight junction protein 3	222	PDZ 2.					tight junction	protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0118)|STAD - Stomach adenocarcinoma(1328;0.18)		ATTACAGATTCGGGCCTGGCT	0.592													22	28					0	0	0.00047179	0	0
MRPL54	116541	broad.mit.edu	37	19	3765185	3765185	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr19:3765185G>A	uc002lyq.3	+	2	174	c.140G>A	c.(139-141)GGA>GAA	p.G47E		NM_172251	NP_758455	Q6P161	RM54_HUMAN	mitochondrial ribosomal protein L54 precursor	47						mitochondrion|ribosome					0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00467)|STAD - Stomach adenocarcinoma(1328;0.18)		GCCAAATCGGGAAAAGGTGCA	0.557													11	23					0	0	0.000673444	0	0
MPND	84954	broad.mit.edu	37	19	4354996	4354996	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr19:4354996C>T	uc002mae.2	+	7	964	c.897C>T	c.(895-897)GGC>GGT	p.G299G	MPND_uc010dtx.2_RNA|MPND_uc002mag.2_Intron|MPND_uc002maf.2_Silent_p.G299G|MPND_uc002mah.2_Silent_p.G187G|MPND_uc002mai.2_Silent_p.G187G	NM_032868	NP_116257	Q8N594	MPND_HUMAN	MPN domain containing isoform 1	299	MPN.						peptidase activity			breast(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0149)|STAD - Stomach adenocarcinoma(1328;0.18)		ACCTGGGGGGCCGCTGGGACG	0.672													9	20					0	0	0.000673444	0	0
PLIN3	10226	broad.mit.edu	37	19	4839243	4839243	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr19:4839243G>A	uc002mbj.2	-	8	1443	c.1266C>T	c.(1264-1266)GCC>GCT	p.A422A	PLIN3_uc002mbk.2_Silent_p.A410A|PLIN3_uc002mbl.3_Silent_p.A421A	NM_005817	NP_005808	O60664	PLIN3_HUMAN	mannose 6 phosphate receptor binding protein 1	422					vesicle-mediated transport	endosome membrane|Golgi apparatus|lipid particle	protein binding				0					Galsulfase(DB01279)|Idursulfase(DB01271)	TGATTCCAGGGGCAAAGGGTC	0.622													35	91					0	0	0.00170553	0	0
PLIN3	10226	broad.mit.edu	37	19	4852162	4852162	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr19:4852162G>A	uc002mbj.2	-	5	677	c.500C>T	c.(499-501)TCC>TTC	p.S167F	PLIN3_uc002mbk.2_Missense_Mutation_p.S155F|PLIN3_uc002mbl.3_Missense_Mutation_p.S167F	NM_005817	NP_005808	O60664	PLIN3_HUMAN	mannose 6 phosphate receptor binding protein 1	167					vesicle-mediated transport	endosome membrane|Golgi apparatus|lipid particle	protein binding				0					Galsulfase(DB01279)|Idursulfase(DB01271)	GGTCACTACGGACTTTGTCTT	0.657											OREG0025175	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	16	23					0	0	0.00074312	0	0
SLC25A41	284427	broad.mit.edu	37	19	6432079	6432079	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr19:6432079C>T	uc010dus.2	-	2	430	c.344G>A	c.(343-345)AGA>AAA	p.R115K	SLC25A41_uc010dut.2_5'UTR	NM_173637	NP_775908	Q8N5S1	S2541_HUMAN	solute carrier family 25, member 41	115	Solcar 1.				transmembrane transport	integral to membrane|mitochondrial inner membrane	binding				0						CACCTTGGCTCTGTCCAGAGG	0.607													23	45					0	0	0.000586117	0	0
C3	718	broad.mit.edu	37	19	6684808	6684808	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr19:6684808C>T	uc002mfm.2	-	31	4069	c.4007G>A	c.(4006-4008)GGA>GAA	p.G1336E	C3_uc002mfl.2_Missense_Mutation_p.G72E	NM_000064	NP_000055	P01024	CO3_HUMAN	complement component 3 precursor	1336					complement activation, alternative pathway|complement activation, classical pathway|G-protein coupled receptor protein signaling pathway|inflammatory response|positive regulation vascular endothelial growth factor production	extracellular space	endopeptidase inhibitor activity|receptor binding			skin(3)|ovary(1)|pancreas(1)	5				GBM - Glioblastoma multiforme(1328;1.36e-05)|Lung(535;0.00661)		TTGGCCTTTTCCTTCAGCTGT	0.537													50	123					0	0	0.000781405	0	0
EMR1	2015	broad.mit.edu	37	19	6913831	6913831	+	Silent	SNP	G	A	A	rs141986863	byFrequency	TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr19:6913831G>A	uc002mfw.2	+	11	1328	c.1290G>A	c.(1288-1290)ACG>ACA	p.T430T	EMR1_uc010dvc.2_Silent_p.T430T|EMR1_uc010dvb.2_Silent_p.T378T|EMR1_uc010xji.1_Silent_p.T289T|EMR1_uc010xjj.1_Silent_p.T253T	NM_001974	NP_001965	Q14246	EMR1_HUMAN	egf-like module containing, mucin-like, hormone	430	Ser/Thr-rich.|Extracellular (Potential).			T -> A (in Ref. 1; CAA57232).	cell adhesion|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(3)|lung(1)|skin(1)	5	all_hematologic(4;0.166)					CTGTTCGGACGGAATACTTAG	0.502													33	77					0	0	0.00111076	0	0
MCOLN1	57192	broad.mit.edu	37	19	7589984	7589984	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr19:7589984C>T	uc002mgo.2	+	2	294	c.169C>T	c.(169-171)CGA>TGA	p.R57*	MCOLN1_uc010dvh.1_Nonsense_Mutation_p.R57*|MCOLN1_uc002mgp.2_5'UTR	NM_020533	NP_065394	Q9GZU1	MCLN1_HUMAN	mucolipin 1	57					calcium ion transport|cellular iron ion homeostasis|transferrin transport	integral to plasma membrane|late endosome membrane|lysosomal membrane	cation channel activity|iron ion transmembrane transporter activity			breast(1)	1						CGACAAGTTTCGAGCCAAGGG	0.617													12	43					0	0	0.00185496	0	0
FBN3	84467	broad.mit.edu	37	19	8173110	8173110	+	Missense_Mutation	SNP	G	A	A	rs34969727		TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr19:8173110G>A	uc002mjf.2	-	36	4652	c.4631C>T	c.(4630-4632)ACC>ATC	p.T1544I		NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	1544	TB 6.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						CGGGCACAGGGTTCTGTACTC	0.552													28	79					0	0	0.000692331	0	0
FBN3	84467	broad.mit.edu	37	19	8196549	8196549	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr19:8196549C>T	uc002mjf.2	-	14	1900	c.1879G>A	c.(1879-1881)GGC>AGC	p.G627S		NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	627	TB 3.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						GCACAGGAGCCCTTCTCGATG	0.677													27	51					0	0	0.00106085	0	0
PRAM1	84106	broad.mit.edu	37	19	8555575	8555575	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr19:8555575C>T	uc002mkd.2	-	7	1829	c.1809G>A	c.(1807-1809)GGG>GGA	p.G603G	PRAM1_uc002mkc.2_Silent_p.G602G	NM_032152	NP_115528	Q96QH2	PRAM_HUMAN	PML-RARA regulated adaptor molecule 1	651	SH3.						lipid binding|protein binding				0						GCTTGCCACCCCCGCGACGTG	0.597													4	7					0	0	0.00024832	0	0
MYO1F	4542	broad.mit.edu	37	19	8620618	8620618	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr19:8620618C>T	uc002mkg.2	-	2	180	c.66G>A	c.(64-66)ATG>ATA	p.M22I	MYO1F_uc002mkh.2_Missense_Mutation_p.M22I|MYO1F_uc010xkf.1_Missense_Mutation_p.M22I	NM_012335	NP_036467	O00160	MYO1F_HUMAN	myosin IF	22	Myosin head-like.					unconventional myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(1)	3						GAAGAAGCACCATGTCATCCA	0.637													19	54					0	0	0.00188189	0	0
MUC16	94025	broad.mit.edu	37	19	9059391	9059391	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr19:9059391C>T	uc002mkp.2	-	3	28259	c.28055G>A	c.(28054-28056)AGA>AAA	p.R9352K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	9354	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGTAGAAATTCTAGTGATGGT	0.517													25	44					0	0	0.000586117	0	0
MUC16	94025	broad.mit.edu	37	19	9069895	9069895	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr19:9069895G>A	uc002mkp.2	-	3	17755	c.17551C>T	c.(17551-17553)CCT>TCT	p.P5851S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5853	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTTACAAAAGGAAAAGTGGAG	0.478													34	89					0	0	0.000953801	0	0
MUC16	94025	broad.mit.edu	37	19	9084701	9084701	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr19:9084701C>T	uc002mkp.2	-	1	7318	c.7114G>A	c.(7114-7116)GAT>AAT	p.D2372N		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	2372	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TTGATCAGATCAGAAGAAGAA	0.448													12	17					0	0	0.000308642	0	0
OR7D4	125958	broad.mit.edu	37	19	9324635	9324635	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr19:9324635C>T	uc002mla.1	-	1	879	c.879G>A	c.(877-879)AGG>AGA	p.R293R		NM_001005191	NP_001005191	Q8NG98	OR7D4_HUMAN	olfactory receptor, family 7, subfamily D,	293	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4						CATCCTTGTTCCTCAGGCTGT	0.562													25	56					0	0	0.00178596	0	0
ANGPTL6	83854	broad.mit.edu	37	19	10204063	10204063	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr19:10204063G>A	uc002mmx.1	-	5	1302	c.1184C>T	c.(1183-1185)CCC>CTC	p.P395L	ANGPTL6_uc002mmy.1_Missense_Mutation_p.P395L	NM_031917	NP_114123	Q8NI99	ANGL6_HUMAN	angiopoietin-like 6 precursor	395	Fibrinogen C-terminal.				angiogenesis|cell differentiation|signal transduction	extracellular space	receptor binding				0			OV - Ovarian serous cystadenocarcinoma(20;3.58e-08)|Epithelial(33;2.5e-05)|all cancers(31;5.96e-05)			GGTGCTGAAGGGCTTGTCATT	0.577													38	102					0	0	0.00128727	0	0
SMARCA4	6597	broad.mit.edu	37	19	11130342	11130342	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr19:11130342G>A	uc002mqf.3	+	18	2865	c.2581G>A	c.(2581-2583)GAG>AAG	p.E861K	SMARCA4_uc010dxp.2_Missense_Mutation_p.E861K|SMARCA4_uc010dxo.2_Missense_Mutation_p.E861K|SMARCA4_uc002mqg.1_Missense_Mutation_p.E861K|SMARCA4_uc010dxq.2_Missense_Mutation_p.E861K|SMARCA4_uc010dxr.2_Missense_Mutation_p.E861K|SMARCA4_uc002mqj.3_Missense_Mutation_p.E861K|SMARCA4_uc010dxs.2_Missense_Mutation_p.E861K|SMARCA4_uc010dxt.1_Missense_Mutation_p.E81K|SMARCA4_uc002mqh.3_5'UTR|SMARCA4_uc002mqi.1_5'Flank	NM_003072	NP_003063	P51532	SMCA4_HUMAN	SWI/SNF-related matrix-associated	861	Helicase ATP-binding.				chromatin remodeling|negative regulation of androgen receptor signaling pathway|negative regulation of cell growth|negative regulation of S phase of mitotic cell cycle|negative regulation of transcription from RNA polymerase II promoter|nervous system development|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nBAF complex|npBAF complex|nuclear chromatin|SWI/SNF complex|WINAC complex	androgen receptor binding|ATP binding|DNA binding|DNA-dependent ATPase activity|helicase activity|histone acetyl-lysine binding|identical protein binding|p53 binding|protein N-terminus binding|transcription corepressor activity	p.?(1)		lung(29)|ovary(8)|pancreas(7)|large_intestine(5)|central_nervous_system(5)|skin(3)|prostate(3)|breast(2)|adrenal_gland(1)|stomach(1)|liver(1)|autonomic_ganglia(1)|kidney(1)	67		all_lung(6;0.0512)|Lung NSC(9;0.0568)				GACGACGTACGAGTACATCAT	0.597			F|N|Mis		NSCLC				Rhabdoid_Predisposition_syndrome				9	16					0	0	0.000978159	0	0
TNPO2	30000	broad.mit.edu	37	19	12812989	12812989	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr19:12812989G>A	uc002muo.2	-	21	2493	c.2308C>T	c.(2308-2310)CGC>TGC	p.R770C	TNPO2_uc002mup.2_Intron|TNPO2_uc002muq.2_Intron|TNPO2_uc002mur.2_Intron	NM_001136196	NP_001129668	O14787	TNPO2_HUMAN	transportin 2 (importin 3, karyopherin beta 2b)	770	HEAT 13.				intracellular protein transport	cytoplasm|nucleus	nuclear localization sequence binding|protein binding|protein transporter activity			ovary(1)	1						CTCGTCAGGCGACCTGCAACC	0.687													17	18					0	0	0.000958276	0	0
DNASE2	1777	broad.mit.edu	37	19	12991836	12991836	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr19:12991836C>G	uc002mvn.1	-	2	363	c.217G>C	c.(217-219)GGG>CGG	p.G73R	DNASE2_uc010xmr.1_Missense_Mutation_p.G73R	NM_001375	NP_001366	O00115	DNS2A_HUMAN	deoxyribonuclease II, lysosomal precursor	73					apoptosis	lysosome	deoxyribonuclease II activity|DNA binding|protein binding				0						CCCACGGCCCCCTCCGGGCTG	0.697								Direct_reversal_of_damage					11	36					0	0	0.000673444	0	0
RAD23A	5886	broad.mit.edu	37	19	13059531	13059531	+	Silent	SNP	G	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr19:13059531G>T	uc002mvw.1	+	5	613	c.504G>T	c.(502-504)ACG>ACT	p.T168T	RAD23A_uc002mvx.1_Silent_p.T168T|RAD23A_uc002mvz.1_Silent_p.T168T|RAD23A_uc002mwa.1_Silent_p.T168T|RAD23A_uc002mvy.1_Silent_p.T3T|RAD23A_uc010xmw.1_Silent_p.T3T	NM_005053	NP_005044	P54725	RD23A_HUMAN	UV excision repair protein RAD23 homolog A	168	UBA 1.				interspecies interaction between organisms|nucleotide-excision repair|positive regulation of viral genome replication|proteasomal ubiquitin-dependent protein catabolic process|regulation of proteasomal ubiquitin-dependent protein catabolic process	nucleus|proteasome complex	damaged DNA binding|polyubiquitin binding|single-stranded DNA binding			central_nervous_system(1)	1						CGATGCTGACGGAGATCATGT	0.617								NER					9	157					0.000978159	0.00454333	0.000978159	1	0
ZNF333	84449	broad.mit.edu	37	19	14805826	14805826	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr19:14805826C>T	uc002mzn.2	+	3	142	c.8C>T	c.(7-9)TCC>TTC	p.S3F	ZNF333_uc010dzq.2_Missense_Mutation_p.S3F|ZNF333_uc002mzk.3_5'UTR|ZNF333_uc002mzl.3_Missense_Mutation_p.S3F|ZNF333_uc002mzm.2_Missense_Mutation_p.S3F|ZNF333_uc010dzr.1_RNA	NM_032433	NP_115809	Q96JL9	ZN333_HUMAN	zinc finger protein 333	3					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3						TTTTAGGAATCCGTCACCTTT	0.527													50	103					0	0	0.000781405	0	0
OR10H2	26538	broad.mit.edu	37	19	15839270	15839270	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr19:15839270G>A	uc002nbm.2	+	1	437	c.417G>A	c.(415-417)CGG>CGA	p.R139R		NM_013939	NP_039227	O60403	O10H2_HUMAN	olfactory receptor, family 10, subfamily H,	139	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3	all_hematologic(1;0.0517)|Acute lymphoblastic leukemia(2;0.074)					TGAGCCCACGGGGCTGCGCCT	0.637													29	38					0	0	0.00127121	0	0
HSH2D	84941	broad.mit.edu	37	19	16268126	16268126	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr19:16268126C>T	uc002ndp.3	+	8	1112	c.581C>T	c.(580-582)TCC>TTC	p.S194F	HSH2D_uc002ndr.2_Missense_Mutation_p.S137F|HSH2D_uc010ead.2_RNA	NM_032855	NP_116244	Q96JZ2	HSH2D_HUMAN	hematopoietic SH2 domain containing	194				PKSP->AKSA: No change in the ability to inhibit RE/AP up-regulation in response to TCR/CD28 stimulation.		cytoplasm|nucleus					0						CCCCCAAAATCCCCTCTTGGA	0.562													22	52					0	0	0.00229938	0	0
LOC284441	284441	broad.mit.edu	37	19	20369297	20369297	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr19:20369297G>A	uc002nov.2	+	1	841	c.90G>A	c.(88-90)ACG>ACA	p.T30T		NR_003128				SubName: Full=cDNA FLJ51655, highly similar to Actin-like protein 2;												0						GGGATGACACGAAACACCTGT	0.378													58	116					0	0	0.000781405	0	0
ZNF257	113835	broad.mit.edu	37	19	22255614	22255614	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr19:22255614C>T	uc010ecx.2	+	2	176	c.7C>T	c.(7-9)CCA>TCA	p.P3S	ZNF257_uc010ecy.2_5'UTR	NM_033468	NP_258429	Q9Y2Q1	ZN257_HUMAN	zinc finger protein 257	3					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_lung(12;0.0961)|Lung NSC(12;0.103)				TTTTCAGGGACCACTGACAAT	0.408													26	77					0	0	0.000878237	0	0
ZNF676	163223	broad.mit.edu	37	19	22363813	22363813	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr19:22363813G>A	uc002nqs.1	-	3	1024	c.706C>T	c.(706-708)CGA>TGA	p.R236*		NM_001001411	NP_001001411	Q8N7Q3	ZN676_HUMAN	zinc finger protein 676	236	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.114)				ATTGAGGATCGATTAAAAGCT	0.363													8	67					0	0	0.000442599	0	0
C19orf55	148137	broad.mit.edu	37	19	36255778	36255778	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr19:36255778C>T	uc002obq.1	+	6	640	c.567C>T	c.(565-567)TCC>TCT	p.S189S		NM_001039887	NP_001034976	Q2NL68	CS055_HUMAN	hypothetical protein LOC148137	189										ovary(1)	1	all_lung(56;2.87e-07)|Lung NSC(56;4.32e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			GGAACTCATCCCTGCTGGACC	0.627													7	16					0	0	0.00198382	0	0
Unknown	0	broad.mit.edu	37	19	36913367	36913368	+	RNA	DNP	GG	AA	AA			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr19:36913367_36913368GG>AA	uc002odz.1	+	1		c.1292_1293GG>AA								Homo sapiens cDNA FLJ35203 fis, clone PLACE6018441, moderately similar to Mus musculus peroxisomal long chain acyl-CoA thioesterase Ib (Pte1b) gene.																		CAATGGAGAAGGCCCAGGGCCC	0.49													9	23					0	0	6.4e-05	0	0
ZNF529	57711	broad.mit.edu	37	19	37038984	37038984	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr19:37038984G>A	uc002oeh.3	-	5	678	c.476C>T	c.(475-477)ACT>ATT	p.T159I	ZNF529_uc010xth.1_Missense_Mutation_p.T159I|ZNF529_uc010xti.1_Missense_Mutation_p.T141I|ZNF529_uc002oeg.3_Missense_Mutation_p.T54I	NM_020951	NP_066002	Q6P280	ZN529_HUMAN	zinc finger protein 529 isoform a	126					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)	1	Esophageal squamous(110;0.198)					CCGAGGTAAAGTAAGAGATTC	0.363													36	84					0	0	0.00195071	0	0
SPINT2	10653	broad.mit.edu	37	19	38774303	38774303	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr19:38774303G>A	uc002ohr.1	+	2	474	c.143G>A	c.(142-144)CGG>CAG	p.R48Q	SPINT2_uc002ohs.1_Intron	NM_021102	NP_066925	O43291	SPIT2_HUMAN	serine protease inhibitor, Kunitz type, 2	48	Extracellular (Potential).|BPTI/Kunitz inhibitor 1.	Reactive bond (By similarity).			cellular component movement	cytoplasm|extracellular region|integral to membrane|soluble fraction	serine-type endopeptidase inhibitor activity				0	all_cancers(60;6.83e-07)		Lung(45;0.000246)|LUSC - Lung squamous cell carcinoma(53;0.000292)			GGCAGATGCCGGGCCTCCATG	0.557													64	127					0	0	0.000781405	0	0
KCNK6	9424	broad.mit.edu	37	19	38817565	38817565	+	Missense_Mutation	SNP	G	A	A	rs150615852	byFrequency	TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr19:38817565G>A	uc002oic.2	+	2	765	c.655G>A	c.(655-657)GAC>AAC	p.D219N	KCNK6_uc002oid.2_Missense_Mutation_p.D85N	NM_004823	NP_004814	Q9Y257	KCNK6_HUMAN	potassium channel, subfamily K, member 6	219						voltage-gated potassium channel complex	inward rectifier potassium channel activity			ovary(1)	1	all_cancers(60;5.83e-07)		Lung(45;0.00047)|LUSC - Lung squamous cell carcinoma(53;0.000613)		Ibutilide(DB00308)|Quinidine(DB00908)	CGGCCTGGGCGACTACGTGCC	0.632													60	112					0	0	0.000781405	0	0
CATSPERG	57828	broad.mit.edu	37	19	38858195	38858196	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr19:38858195_38858196CG>AT	uc002oih.3	+	24	2904_2905	c.2817_2818CG>AT	c.(2815-2820)TCCGGC>TCATGC	p.G940C	CATSPERG_uc002oig.3_Missense_Mutation_p.G900C|CATSPERG_uc002oif.3_Missense_Mutation_p.G580C|CATSPERG_uc010efw.2_RNA	NM_021185	NP_067008	Q6ZRH7	CTSRG_HUMAN	cation channel, sperm-associated, gamma	940	Extracellular (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				ovary(1)|skin(1)	2						CAGGAGACTCCGGCAGTTTCCA	0.554													8	606					0	0	6.4e-05	0	0
HNRNPL	3191	broad.mit.edu	37	19	39330858	39330858	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr19:39330858G>A	uc010xul.1	-	8	1122	c.1111C>T	c.(1111-1113)CCA>TCA	p.P371S	HNRNPL_uc010ege.1_Missense_Mutation_p.P27S|HNRNPL_uc002ojj.1_Missense_Mutation_p.P27S|HNRNPL_uc002ojo.1_5'Flank|HNRNPL_uc002ojk.2_Missense_Mutation_p.P27S|HNRNPL_uc002ojl.2_Missense_Mutation_p.P27S|HNRNPL_uc010xum.1_Missense_Mutation_p.P238S|HNRNPL_uc002ojp.1_Missense_Mutation_p.P27S|HNRNPL_uc010xun.1_Silent_p.P78P	NM_001533	NP_001524	P14866	HNRPL_HUMAN	heterogeneous nuclear ribonucleoprotein L	371	Pro-rich.				nuclear mRNA splicing, via spliceosome	cytoplasm|heterogeneous nuclear ribonucleoprotein complex|nucleoplasm	nucleotide binding|protein binding|RNA binding|transcription regulatory region DNA binding				0	all_cancers(60;6.83e-06)|Ovarian(47;0.0454)		Lung(45;0.00342)|LUSC - Lung squamous cell carcinoma(53;0.00575)			TCGGGTGGTGGGGGAGGGGGT	0.612													15	14					0	0	0.000566183	0	0
FCGBP	8857	broad.mit.edu	37	19	40354371	40354371	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr19:40354371C>T	uc002omp.3	-	35	16106	c.16098G>A	c.(16096-16098)GGG>GGA	p.G5366G		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	5366	VWFD 13.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			CACACAGTTTCCCAGCATGGT	0.577													14	24					0	0	0.000308642	0	0
CYP2F1	1572	broad.mit.edu	37	19	41622461	41622461	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr19:41622461G>T	uc002opu.1	+	3	329	c.273G>T	c.(271-273)CAG>CAT	p.Q91H	CYP2F1_uc010xvw.1_Translation_Start_Site|CYP2F1_uc010xvv.1_Missense_Mutation_p.Q91H|CYP2F1_uc002opv.1_RNA	NM_000774	NP_000765	P24903	CP2F1_HUMAN	cytochrome P450, family 2, subfamily F,	91					naphthalene metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding				0						TGGTGGACCAGGGAGAGGAGT	0.587													22	32					2.37509e-13	1.11919e-12	0.00152264	1	0
CEACAM5	1048	broad.mit.edu	37	19	42218946	42218946	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr19:42218946G>A	uc002ork.2	+	3	602	c.481G>A	c.(481-483)GAT>AAT	p.D161N	CEACAM5_uc010ehz.1_Missense_Mutation_p.D161N|CEACAM5_uc002orj.1_Missense_Mutation_p.D161N|CEACAM5_uc002orl.2_Missense_Mutation_p.D161N	NM_004363	NP_004354	P06731	CEAM5_HUMAN	carcinoembryonic antigen-related cell adhesion	161	Ig-like 2.					anchored to membrane|basolateral plasma membrane|integral to plasma membrane				skin(2)	2				OV - Ovarian serous cystadenocarcinoma(3;0.00278)|all cancers(3;0.00625)|Epithelial(262;0.0379)|GBM - Glioblastoma multiforme(1328;0.142)		GGAGGACAAGGATGCTGTGGC	0.572													53	136					0	0	0.000781405	0	0
LIPE	3991	broad.mit.edu	37	19	42930801	42930801	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr19:42930801C>T	uc002otr.2	-	1	778	c.501G>A	c.(499-501)AGG>AGA	p.R167R	uc010eif.1_Intron|uc002ott.1_Intron|uc010eig.1_Intron|uc010eih.1_Intron|LIPE_uc002ots.1_5'Flank	NM_005357	NP_005348	Q05469	LIPS_HUMAN	hormone-sensitive lipase	167					cholesterol metabolic process|protein phosphorylation|triglyceride catabolic process	caveola|cytosol	hormone-sensitive lipase activity|protein binding			ovary(1)|breast(1)	2		Prostate(69;0.00682)				CAGATGGCTCCCTTTTGGCTC	0.572													36	78					0	0	0.00170553	0	0
PSG9	5678	broad.mit.edu	37	19	43763240	43763240	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr19:43763240C>T	uc002owd.3	-	4	856	c.757G>A	c.(757-759)GAG>AAG	p.E253K	PSG9_uc002owe.3_Intron|PSG9_uc010xwm.1_Missense_Mutation_p.E160K|PSG9_uc002owf.3_Intron|PSG9_uc002owg.2_Intron|PSG9_uc002owh.2_Intron	NM_002784	NP_002775	Q00887	PSG9_HUMAN	pregnancy specific beta-1-glycoprotein 9	253	Ig-like C2-type 2.				female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00682)				TCCTTATTCTCCCTGGGGTTT	0.507													80	215					0	0	0.000781405	0	0
ZNF230	7773	broad.mit.edu	37	19	44515552	44515552	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr19:44515552G>A	uc002oyb.1	+	5	1612	c.1361G>A	c.(1360-1362)GGG>GAG	p.G454E		NM_006300	NP_006291	Q9UIE0	ZN230_HUMAN	zinc finger protein 230	454					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0352)				GAGGACTGTGGGAAGCGCTAC	0.308													18	33					0	0	0.000566183	0	0
PVR	5817	broad.mit.edu	37	19	45162131	45162132	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr19:45162131_45162132CC>AA	uc002ozm.2	+	6	1412_1413	c.1113_1114CC>AA	c.(1111-1116)TCCCGT>TCAAGT	p.R372S	PVR_uc010ejs.2_Missense_Mutation_p.R372S|PVR_uc010xxb.1_Intron|PVR_uc010xxc.1_Intron|PVR_uc002ozn.2_Missense_Mutation_p.R317S	NM_006505	NP_006496	P15151	PVR_HUMAN	poliovirus receptor isoform alpha	372	Cytoplasmic (Potential).|DYNLT1 binding.			KCSR->ACSA: Partial loss of DYNLT1 binding.	adherens junction organization|cell adhesion|cell junction assembly|interspecies interaction between organisms|positive regulation of natural killer cell mediated cytotoxicity directed against tumor cell target|susceptibility to natural killer cell mediated cytotoxicity|susceptibility to T cell mediated cytotoxicity	cell junction|cell surface|cytoplasm|extracellular space|integral to membrane|nucleus	cell adhesion molecule binding|receptor activity				0	Lung NSC(12;0.00608)|all_lung(12;0.0148)	Medulloblastoma(540;0.0425)|Ovarian(192;0.0728)|Prostate(69;0.081)|all_neural(266;0.112)		Epithelial(262;0.000601)		CCAAATGTTCCCGTGAGGTCCT	0.376													14	773					0	0	6.4e-05	0	0
RELB	5971	broad.mit.edu	37	19	45528871	45528871	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr19:45528871C>T	uc002paj.1	+	8	888	c.762C>T	c.(760-762)TCC>TCT	p.S254S		NM_006509	NP_006500	Q01201	RELB_HUMAN	reticuloendotheliosis viral oncogene homolog B	254	RHD.					nucleus	protein binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			ovary(1)	1		Ovarian(192;0.0728)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.00986)		CAGCTGGGTCCCTGAAGAACC	0.607													80	169					0	0	0.000781405	0	0
QPCTL	54814	broad.mit.edu	37	19	46201878	46201878	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr19:46201878C>T	uc010xxr.1	+	4	928	c.707C>T	c.(706-708)TCC>TTC	p.S236F	QPCTL_uc010ekn.2_Missense_Mutation_p.S142F	NM_017659	NP_060129	Q9NXS2	QPCTL_HUMAN	glutaminyl-peptide cyclotransferase-like isoform	236					peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase|proteolysis	Golgi membrane|integral to membrane	acyltransferase activity|glutaminyl-peptide cyclotransferase activity|peptidase activity|protein binding|zinc ion binding			skin(1)	1		Ovarian(192;0.051)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.0059)|GBM - Glioblastoma multiforme(486;0.0882)|Epithelial(262;0.208)		CCCAAGGACTCCCTTTACGGT	0.642													18	38					0	0	0.00121646	0	0
FOXA3	3171	broad.mit.edu	37	19	46375805	46375805	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr19:46375805C>T	uc002pdr.2	+	2	739	c.542C>T	c.(541-543)TCC>TTC	p.S181F		NM_004497	NP_004488	P55318	FOXA3_HUMAN	forkhead box A3	181	Fork-head.				brain development|cellular glucose homeostasis|cellular response to starvation|chromatin modification|embryo development|endocrine pancreas development|negative regulation of cell proliferation|neural plate anterior/posterior regionalization|neuron fate specification|positive regulation of hepatocyte differentiation|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity|spermatogenesis	transcription factor complex	DNA bending activity|double-stranded DNA binding|protein domain specific binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|transcription regulatory region DNA binding			breast(1)	1		Ovarian(192;0.0308)|all_neural(266;0.0476)		OV - Ovarian serous cystadenocarcinoma(262;0.00453)|GBM - Glioblastoma multiforme(486;0.0518)|Epithelial(262;0.236)		GTGGCGCGTTCCCCAGACAAG	0.582													18	43					0	0	0.00152264	0	0
NPAS1	4861	broad.mit.edu	37	19	47535945	47535945	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr19:47535945C>T	uc002pfw.2	+	5	673	c.477C>T	c.(475-477)TTC>TTT	p.F159F	NPAS1_uc002pfx.2_5'UTR|NPAS1_uc002pfy.2_Silent_p.F159F|NPAS1_uc010xyj.1_5'Flank	NM_002517	NP_002508	Q99742	NPAS1_HUMAN	neuronal PAS domain protein 1	159	PAS 1.				central nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|signal transducer activity				0		all_cancers(25;4.31e-08)|all_epithelial(76;2.96e-06)|all_lung(116;7.86e-06)|Lung NSC(112;2.31e-05)|all_neural(266;0.026)|Ovarian(192;0.0392)|Breast(70;0.102)		all cancers(93;6.02e-05)|OV - Ovarian serous cystadenocarcinoma(262;7.35e-05)|Epithelial(262;0.00389)|GBM - Glioblastoma multiforme(486;0.0252)		AAGGAAAATTCCTCTACATCT	0.577											OREG0025585	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	20	66					0	0	0.00278032	0	0
PRR12	57479	broad.mit.edu	37	19	50128183	50128183	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr19:50128183C>T	uc002poo.3	+	12	5804	c.5804C>T	c.(5803-5805)CCT>CTT	p.P1935L		NM_020719	NP_065770	Q9ULL5	PRR12_HUMAN	proline rich 12	1114							DNA binding			central_nervous_system(1)|pancreas(1)	2		all_lung(116;2.45e-07)|Lung NSC(112;1.24e-06)|Ovarian(192;0.0728)|all_neural(266;0.0887)		OV - Ovarian serous cystadenocarcinoma(262;0.00319)|GBM - Glioblastoma multiforme(134;0.0132)		CGGCTGCGGCCTGCTGGGGAA	0.667													13	42					0	0	0.00136819	0	0
SIGLEC11	114132	broad.mit.edu	37	19	50461681	50461681	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr19:50461681C>T	uc010ybh.1	-	8	1601	c.1510G>A	c.(1510-1512)GAG>AAG	p.E504K	SIGLEC11_uc010ybi.1_Intron	NM_052884	NP_443116	Q96RL6	SIG11_HUMAN	sialic acid binding Ig-like lectin 11 isoform 1	504	Extracellular (Potential).				cell adhesion	integral to membrane	sugar binding			ovary(3)|central_nervous_system(2)|pancreas(1)	6		all_lung(116;0.00318)|all_neural(266;0.107)|Ovarian(192;0.17)		GBM - Glioblastoma multiforme(134;0.00107)|OV - Ovarian serous cystadenocarcinoma(262;0.00517)		GGGGTGACCTCGAAGGAGCCC	0.692													10	25					0	0	0.00244969	0	0
GPR32	2854	broad.mit.edu	37	19	51274520	51274520	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr19:51274520C>T	uc010ycf.1	+	1	663	c.663C>T	c.(661-663)TTC>TTT	p.F221F		NM_001506	NP_001497	O75388	GPR32_HUMAN	G protein-coupled receptor 32	221	Helical; Name=5; (Potential).					integral to plasma membrane	N-formyl peptide receptor activity			upper_aerodigestive_tract(1)	1		all_neural(266;0.131)		OV - Ovarian serous cystadenocarcinoma(262;0.00641)|GBM - Glioblastoma multiforme(134;0.028)		TTGGCCACTTCCTGCTGGGCT	0.592													17	48					0	0	0.00074312	0	0
SIGLEC7	27036	broad.mit.edu	37	19	51649346	51649346	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr19:51649346C>T	uc002pvv.1	+	4	1064	c.995C>T	c.(994-996)TCC>TTC	p.S332F	SIGLEC7_uc002pvw.1_Missense_Mutation_p.S239F|SIGLEC7_uc010eoq.1_Intron|SIGLEC7_uc010eor.1_Intron	NM_014385	NP_055200	Q9Y286	SIGL7_HUMAN	sialic acid binding Ig-like lectin 7 isoform 1	332	Ig-like C2-type 2.|Extracellular (Potential).				cell adhesion	integral to plasma membrane	receptor activity|sugar binding			large_intestine(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000836)|OV - Ovarian serous cystadenocarcinoma(262;0.00297)		CAGCACGTTTCCCTGAACCTC	0.607													23	55					0	0	0.00278032	0	0
CEACAM18	729767	broad.mit.edu	37	19	51983606	51983606	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr19:51983606G>A	uc002pwv.1	+	3	255	c.255G>A	c.(253-255)GGG>GGA	p.G85G		NM_001080405	NP_001073874	A8MTB9	CEA18_HUMAN	carcinoembryonic antigen-related cell adhesion	85	Helical; (Potential).					integral to membrane				skin(1)	1		all_neural(266;0.0529)		GBM - Glioblastoma multiforme(134;0.00148)|OV - Ovarian serous cystadenocarcinoma(262;0.00979)		TGGCCTGTGGGATCTGCCAGG	0.507													4	12					0	0	0.00116845	0	0
ZNF816A	125893	broad.mit.edu	37	19	53454394	53454394	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr19:53454394G>A	uc002qal.1	-	5	935	c.634C>T	c.(634-636)CTC>TTC	p.L212F	ZNF321_uc010eqj.2_Intron|ZNF321_uc002qak.1_Intron|ZNF816A_uc002qam.1_Missense_Mutation_p.L196F	NM_001031665	NP_001026835	Q0VGE8	ZN816_HUMAN	zinc finger protein 816A	212					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.0313)		GAAGAATGGAGGAAATTCTTC	0.373													17	58					0	0	0.000422831	0	0
ZNF665	79788	broad.mit.edu	37	19	53668737	53668737	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr19:53668737G>A	uc010eqm.1	-	4	1106	c.1006C>T	c.(1006-1008)CAT>TAT	p.H336Y		NM_024733	NP_079009	Q9H7R5	ZN665_HUMAN	zinc finger protein 665	271	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2				GBM - Glioblastoma multiforme(134;0.0196)		ATTGTCTGATGGGTAGTCAGG	0.438													37	101					0	0	0.000814825	0	0
ZNF845	91664	broad.mit.edu	37	19	53854516	53854516	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr19:53854516C>T	uc010ydv.1	+	4	705	c.588C>T	c.(586-588)TTC>TTT	p.F196F	ZNF845_uc010ydw.1_Silent_p.F196F	NM_138374	NP_612383	Q96IR2	ZN845_HUMAN	zinc finger protein 845	196					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GGAATAATTTCCTGAATTCTT	0.363													34	91					0	0	0.00209593	0	0
ZNF813	126017	broad.mit.edu	37	19	53990010	53990010	+	Missense_Mutation	SNP	T	G	G			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr19:53990010T>G	uc002qbu.2	+	3	268	c.140T>G	c.(139-141)CTG>CGG	p.L47R	ZNF813_uc010eqq.1_RNA	NM_001004301	NP_001004301	Q6ZN06	ZN813_HUMAN	zinc finger protein 813	47	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)	1				GBM - Glioblastoma multiforme(134;0.00619)		CTGGTCTCCCTGGGTGAGGAT	0.393													23	135					0	0	0.0025221	0	0
CACNG7	59284	broad.mit.edu	37	19	54418660	54418660	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr19:54418660T>C	uc002qcr.1	+	3	340	c.325T>C	c.(325-327)TTC>CTC	p.F109L	CACNG7_uc010era.1_Missense_Mutation_p.F109L	NM_031896	NP_114102	P62955	CCG7_HUMAN	voltage-dependent calcium channel gamma-7	109	Helical; (Potential).				regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(1)	1	all_cancers(19;0.0462)|all_epithelial(19;0.0258)|all_lung(19;0.185)|Ovarian(34;0.19)|Lung NSC(19;0.218)			GBM - Glioblastoma multiforme(134;0.0711)		GGTCAGCCTCTTCCTCGTGTT	0.607													17	49					0	0	0.00121646	0	0
CACNG7	59284	broad.mit.edu	37	19	54445412	54445412	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr19:54445412C>T	uc002qcr.1	+	5	708	c.693C>T	c.(691-693)TTC>TTT	p.F231F		NM_031896	NP_114102	P62955	CCG7_HUMAN	voltage-dependent calcium channel gamma-7	231				GAGVMSVYLFTKRYAEEEMYRPHPAFYRPRLSDCSDYSGQF LQPEAWRRGRSPSDISSDVSIQMTQNYPPAIKYPDHLHIST SPC -> VTSVGPRL (in Ref. 1; AAK20030).	regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(1)	1	all_cancers(19;0.0462)|all_epithelial(19;0.0258)|all_lung(19;0.185)|Ovarian(34;0.19)|Lung NSC(19;0.218)			GBM - Glioblastoma multiforme(134;0.0711)		CGGGCCAGTTCCTGCAGCCCG	0.657													31	75					0	0	0.0024448	0	0
LILRA5	353514	broad.mit.edu	37	19	54823336	54823336	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr19:54823336C>T	uc002qfe.2	-	4	327	c.207G>A	c.(205-207)GGG>GGA	p.G69G	LILRA5_uc002qff.2_Silent_p.G57G|LILRA5_uc010yev.1_Silent_p.G69G|LILRA5_uc010yew.1_Silent_p.G57G|LILRA5_uc002qfh.1_Silent_p.G57G|LILRA5_uc002qfg.1_Silent_p.G69G	NM_021250	NP_067073	A6NI73	LIRA5_HUMAN	leukocyte immunoglobulin-like receptor subfamily	69	Extracellular (Potential).|Ig-like C2-type 1.				innate immune response	extracellular region|integral to membrane	receptor activity			upper_aerodigestive_tract(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		CCTCCAGGGTCCCCTGACACC	0.587													33	77					0	0	0.00058488	0	0
LILRA4	23547	broad.mit.edu	37	19	54849228	54849228	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr19:54849228G>A	uc002qfj.2	-	4	691	c.634C>T	c.(634-636)CCC>TCC	p.P212S	LILRA4_uc002qfi.2_Missense_Mutation_p.P146S	NM_012276	NP_036408	P59901	LIRA4_HUMAN	leukocyte immunoglobulin-like receptor subfamily	212	Extracellular (Potential).|Ig-like C2-type 2.					integral to membrane	receptor activity			upper_aerodigestive_tract(1)|central_nervous_system(1)	2	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.0565)		AGCTGCAGGGGGTCACTGGGT	0.572													15	39					0	0	0.000422831	0	0
KIR3DX1	90011	broad.mit.edu	37	19	55048297	55048297	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr19:55048297C>T	uc010erm.2	+	1	177	c.165C>T	c.(163-165)GTC>GTT	p.V55V	KIR3DX1_uc010yfa.1_RNA|KIR3DX1_uc010yfb.1_RNA|KIR3DX1_uc010yfc.1_RNA|KIR3DX1_uc010yfd.1_RNA					Homo sapiens killer cell immunoglobulin-like receptor, three domains, X1, mRNA (cDNA clone IMAGE:4849085).											ovary(1)	1				GBM - Glioblastoma multiforme(193;0.099)		CAACGCCAGTCCCTGGCGGGA	0.572													31	71					0	0	0.00178596	0	0
NLRP2	55655	broad.mit.edu	37	19	55481484	55481484	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr19:55481484C>T	uc002qij.2	+	2	187	c.101C>T	c.(100-102)TCC>TTC	p.S34F	NLRP2_uc010yfp.1_Missense_Mutation_p.S34F|NLRP2_uc010esn.2_Missense_Mutation_p.S34F|NLRP2_uc010eso.2_Missense_Mutation_p.S34F|NLRP2_uc010esp.2_Missense_Mutation_p.S34F	NM_017852	NP_060322	Q9NX02	NALP2_HUMAN	NLR family, pyrin domain containing 2	34	DAPIN.				apoptosis|positive regulation of caspase activity|positive regulation of interleukin-1 beta secretion	cytoplasm	ATP binding|Pyrin domain binding			ovary(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(297;0.163)	GBM - Glioblastoma multiforme(193;0.028)		ACGACCTTCTCCCTGGCACAC	0.547													32	71					0	0	0.0024448	0	0
SAPS1	22870	broad.mit.edu	37	19	55753748	55753748	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr19:55753748C>T	uc002qjw.3	-	6	969	c.727G>A	c.(727-729)GAG>AAG	p.E243K	SAPS1_uc002qjv.2_Missense_Mutation_p.E305K	NM_014931	NP_055746	Q9UPN7	PP6R1_HUMAN	SAPS domain family, member 1	243	Interaction with PPP6C.				regulation of phosphoprotein phosphatase activity	cytoplasm	protein phosphatase binding				0		Renal(1328;0.245)	BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.0449)		ACCCACTTCTCCAGGGTGGCC	0.672													12	46					0	0	0.00136819	0	0
TMEM150B	284417	broad.mit.edu	37	19	55831410	55831410	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr19:55831410G>T	uc010esw.1	-	6	494	c.321C>A	c.(319-321)TTC>TTA	p.F107L	TMEM150B_uc010yfu.1_Missense_Mutation_p.F107L|TMEM150B_uc010yfv.1_RNA|TMEM150B_uc010yfw.1_RNA|TMEM150B_uc002qki.2_Missense_Mutation_p.F107L	NM_001085488	NP_001078957	A6NC51	T150B_HUMAN	transmembrane protein 150B precursor	107	Extracellular (Potential).					integral to membrane					0						GTCTCACCTGGAAATTGCCTA	0.637													29	53					6.38683e-12	3.00704e-11	0.001512	1	0
UBE2S	27338	broad.mit.edu	37	19	55912905	55912905	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr19:55912905C>T	uc002qkx.1	-	4	936	c.568G>A	c.(568-570)GGG>AGG	p.G190R		NM_014501	NP_055316	Q16763	UBE2S_HUMAN	ubiquitin-conjugating enzyme E2S	190					activation of anaphase-promoting complex activity|anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|exit from mitosis|free ubiquitin chain polymerization|protein K11-linked ubiquitination|protein K27-linked ubiquitination|protein K29-linked ubiquitination|protein K6-linked ubiquitination|protein K63-linked ubiquitination	anaphase-promoting complex	ATP binding|ubiquitin-protein ligase activity				0	Breast(117;0.155)		LUSC - Lung squamous cell carcinoma(43;0.13)|BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.11)		CCCTCAGCCCCTCCCGGGCCC	0.716													17	29					0	0	0.00121646	0	0
NLRP11	204801	broad.mit.edu	37	19	56307471	56307471	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr19:56307471G>A	uc010ygf.1	-	8	3028	c.2317C>T	c.(2317-2319)CCC>TCC	p.P773S	NLRP11_uc002qlz.2_Missense_Mutation_p.P620S|NLRP11_uc002qmb.2_Missense_Mutation_p.P674S|NLRP11_uc002qmc.2_RNA|NLRP11_uc010ete.1_RNA	NM_145007	NP_659444	P59045	NAL11_HUMAN	NLR family, pyrin domain containing 11	773							ATP binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		Colorectal(82;0.0002)		GBM - Glioblastoma multiforme(193;0.0325)		GTGCAGTTGGGATGAAGCAAG	0.483													114	218					0	0	0.000781405	0	0
NLRP8	126205	broad.mit.edu	37	19	56481909	56481909	+	Splice_Site	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr19:56481909G>A	uc002qmh.2	+	6	2453	c.2382_splice	c.e6-1	p.R794_splice	NLRP8_uc010etg.2_Splice_Site_p.R794_splice	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8							cytoplasm	ATP binding			ovary(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|kidney(1)	13		Colorectal(82;0.000147)|Ovarian(87;0.17)		GBM - Glioblastoma multiforme(193;0.0695)		GGCTTCTACAGGTTGGAAGAC	0.463													50	125					0	0	0.000781405	0	0
ZIM2	23619	broad.mit.edu	37	19	57286462	57286462	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr19:57286462G>A	uc002qnr.2	-	11	1560	c.1178C>T	c.(1177-1179)TCC>TTC	p.S393F	uc010ygp.1_Intron|uc002qnp.1_Intron|ZIM2_uc010ygq.1_Missense_Mutation_p.S189F|ZIM2_uc010ygr.1_Missense_Mutation_p.S189F|ZIM2_uc002qnq.2_Missense_Mutation_p.S393F|ZIM2_uc010etp.2_Missense_Mutation_p.S393F|ZIM2_uc010ygs.1_Missense_Mutation_p.S393F	NM_015363	NP_056178	Q9NZV7	ZIM2_HUMAN	zinc finger, imprinted 2	393					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)	3		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0314)		ACACTGGACGGAAGGCTTTCT	0.468													18	34					0	0	0.00074312	0	0
PEG3	5178	broad.mit.edu	37	19	57325466	57325466	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr19:57325466C>T	uc002qnu.2	-	7	4695	c.4344G>A	c.(4342-4344)GGG>GGA	p.G1448G	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Silent_p.G1419G|PEG3_uc002qnv.2_Silent_p.G1448G|PEG3_uc002qnw.2_Silent_p.G1324G|PEG3_uc002qnx.2_Silent_p.G1322G|PEG3_uc010etr.2_Silent_p.G1448G	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	1448	Glu-rich.				apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		CATCAGCATCCCCATTTGGCT	0.577													40	75					0	0	0.00170553	0	0
USP29	57663	broad.mit.edu	37	19	57641322	57641322	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr19:57641322A>G	uc002qny.2	+	4	1635	c.1279A>G	c.(1279-1281)AAT>GAT	p.N427D		NM_020903	NP_065954	Q9HBJ7	UBP29_HUMAN	ubiquitin specific peptidase 29	427					protein modification process|ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(6)|ovary(2)|breast(2)|pancreas(1)	11		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		TGTTGTTGCTAATTTTGAGTT	0.408													22	68					0	0	0.00229938	0	0
ZIK1	284307	broad.mit.edu	37	19	58102402	58102402	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr19:58102402A>G	uc002qpg.2	+	4	1320	c.1223A>G	c.(1222-1224)AAG>AGG	p.K408R	ZNF547_uc002qpm.3_Intron|ZIK1_uc002qph.2_Missense_Mutation_p.K353R|ZIK1_uc002qpi.2_Missense_Mutation_p.K395R|ZIK1_uc002qpj.2_Missense_Mutation_p.K305R	NM_001010879	NP_001010879	Q3SY52	ZIK1_HUMAN	zinc finger protein interacting with K protein	408	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)|skin(1)	2		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0257)		AGGCCTTATAAGTGTGGTGAC	0.463													22	44					0	0	0.00278032	0	0
ZNF274	10782	broad.mit.edu	37	19	58724216	58724216	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr19:58724216C>T	uc002qrq.1	+	10	2128	c.1669C>T	c.(1669-1671)CAT>TAT	p.H557Y	ZNF274_uc002qrr.1_Missense_Mutation_p.H525Y|ZNF274_uc002qrs.1_Missense_Mutation_p.H452Y|ZNF274_uc010eum.1_Missense_Mutation_p.H316Y	NM_133502	NP_598009	Q96GC6	ZN274_HUMAN	zinc finger protein 274 isoform c	557	C2H2-type 2.				viral reproduction	centrosome|nucleolus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			ovary(1)	1		Colorectal(82;5.46e-05)|all_neural(62;0.0182)|Ovarian(87;0.0443)|Breast(46;0.0889)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0168)|Lung(386;0.215)		TCAGAGAGTTCATTCTGGAGA	0.507													34	54					0	0	0.00283554	0	0
FAM110C	642273	broad.mit.edu	37	2	45663	45663	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr2:45663C>T	uc010yim.1	-	1	723	c.723G>A	c.(721-723)TCG>TCA	p.S241S		NM_001077710	NP_001071178	Q1W6H9	F110C_HUMAN	hypothetical protein LOC642273	241						microtubule|microtubule organizing center|spindle pole					0	all_hematologic(175;0.0429)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;0.00221)		all cancers(51;0.000815)|Epithelial(75;0.00379)|OV - Ovarian serous cystadenocarcinoma(76;0.0127)|GBM - Glioblastoma multiforme(21;0.232)		TCACACAGTCCGACCCCGCGG	0.692													9	11					0	0	0.000978159	0	0
ACP1	52	broad.mit.edu	37	2	272289	272289	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr2:272289C>T	uc002qwg.2	+	3	311	c.215C>T	c.(214-216)GCC>GTC	p.A72V	ACP1_uc002qwd.2_3'UTR|ACP1_uc002qwe.3_RNA|ACP1_uc002qwh.2_RNA|ACP1_uc002qwf.2_Intron	NM_007099	NP_009030	P24666	PPAC_HUMAN	acid phosphatase 1, soluble isoform b	72						cytoplasm|internal side of plasma membrane|nucleus|soluble fraction	acid phosphatase activity|identical protein binding|non-membrane spanning protein tyrosine phosphatase activity			skin(1)	1	all_hematologic(175;0.0429)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;0.00175)|Lung NSC(108;0.216)|all_epithelial(98;0.236)		all cancers(51;0.000391)|Epithelial(75;0.00281)|OV - Ovarian serous cystadenocarcinoma(76;0.00542)|GBM - Glioblastoma multiforme(21;0.127)		ATTCACACAGCCCATAAAGCA	0.458													8	14					0	0	0.000157383	0	0
Unknown	0	broad.mit.edu	37	2	905565	905565	+	RNA	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr2:905565C>T	uc010ewg.2	-	1		c.18G>A			uc010ewh.1_Missense_Mutation_p.M127I					Homo sapiens cDNA FLJ46162 fis, clone TESTI4002520.																		TCTGGTGTTTCATTTCCTCCC	0.597													36	251					0	0	0.000781405	0	0
TPO	7173	broad.mit.edu	37	2	1507836	1507836	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr2:1507836G>A	uc002qww.2	+	14	2594	c.2503G>A	c.(2503-2505)GGG>AGG	p.G835R	TPO_uc010ewj.2_RNA|TPO_uc002qwu.2_Missense_Mutation_p.G778R|TPO_uc002qwr.2_Missense_Mutation_p.G835R|TPO_uc002qwx.2_Missense_Mutation_p.G778R|TPO_uc010yio.1_Missense_Mutation_p.G662R|TPO_uc010yip.1_Intron|TPO_uc002qwy.1_Intron|TPO_uc002qwz.2_Intron	NM_000547	NP_000538	P07202	PERT_HUMAN	thyroid peroxidase isoform a	835	Extracellular (Potential).|EGF-like; calcium-binding (Potential).				cellular nitrogen compound metabolic process|hormone biosynthetic process|hydrogen peroxide catabolic process	cell surface|cytoplasm|integral to plasma membrane	calcium ion binding|heme binding|iodide peroxidase activity			ovary(7)|pancreas(6)|skin(5)|lung(1)|kidney(1)	20	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;0.0338)		all cancers(51;0.0356)|OV - Ovarian serous cystadenocarcinoma(76;0.0748)|Epithelial(75;0.12)	Carbimazole(DB00389)|Methimazole(DB00763)|Propylthiouracil(DB00550)	AGGAGACGATGGGAGAACCTG	0.557													23	56					0	0	0.000586117	0	0
MYT1L	23040	broad.mit.edu	37	2	1842995	1842995	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr2:1842995C>T	uc002qxe.2	-	21	3833	c.3006G>A	c.(3004-3006)ACG>ACA	p.T1002T	MYT1L_uc002qxd.2_Silent_p.T1000T|MYT1L_uc010ewk.2_5'UTR	NM_015025	NP_055840	Q9UL68	MYT1L_HUMAN	myelin transcription factor 1-like	1002					cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|central_nervous_system(1)	6	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.037)|all_epithelial(98;0.241)		OV - Ovarian serous cystadenocarcinoma(76;0.169)|all cancers(51;0.244)		ACATGCCTTCCGTCTTGACCG	0.667													12	32					0	0	0.00185496	0	0
NT5C1B	93034	broad.mit.edu	37	2	18736667	18736667	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr2:18736667G>A	uc010exr.2	-	9	1847	c.1743C>T	c.(1741-1743)CTC>CTT	p.L581L	NT5C1B_uc002rcy.2_3'UTR|RDH14_uc002rcx.3_Silent_p.L267L	NM_033253	NP_150278	Q96P26	5NT1B_HUMAN	5' nucleotidase, cytosolic IB isoform 2	Error:Variant_position_missing_in_Q96P26_after_alignment					purine base metabolic process|purine nucleotide catabolic process	cytosol	5'-nucleotidase activity|magnesium ion binding|nucleotide binding			skin(2)|ovary(1)	3	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.177)	Ovarian(717;0.208)				CCAAATTGAAGAGTGGTTTGA	0.458													53	109					0	0	0.000781405	0	0
HS1BP3	64342	broad.mit.edu	37	2	20840821	20840822	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr2:20840821_20840822CC>AA	uc002rdw.1	-	3	358_359	c.317_318GG>TT	c.(316-318)CGG>CTT	p.R106L	HS1BP3_uc002rdx.2_Missense_Mutation_p.R106L|HS1BP3_uc002rdy.2_Missense_Mutation_p.R106L	NM_022460	NP_071905	Q53T59	H1BP3_HUMAN	HCLS1 binding protein 3	106	PX.				cell communication		phosphatidylinositol binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CTCTCCTCTCCCGGATGTCAGA	0.559													9	224					0	0	6.4e-05	0	0
APOB	338	broad.mit.edu	37	2	21228808	21228808	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr2:21228808G>A	uc002red.2	-	26	11060	c.10932C>T	c.(10930-10932)TTC>TTT	p.F3644F		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	3644					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	CCTGGCTCTGGAAAGACCCAG	0.458													92	182					0	0	0.000781405	0	0
APOB	338	broad.mit.edu	37	2	21235060	21235060	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr2:21235060G>A	uc002red.2	-	26	4808	c.4680C>T	c.(4678-4680)TCC>TCT	p.S1560S		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	1560					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	CATACTTTAGGGAAGCAGTAT	0.423													108	255					0	0	0.000781405	0	0
NCOA1	8648	broad.mit.edu	37	2	24929663	24929663	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr2:24929663G>A	uc002rfk.2	+	11	1582	c.1324G>A	c.(1324-1326)GGA>AGA	p.G442R	NCOA1_uc010eye.2_Missense_Mutation_p.G442R|NCOA1_uc002rfi.2_Missense_Mutation_p.G291R|NCOA1_uc002rfj.2_Missense_Mutation_p.G442R|NCOA1_uc002rfl.2_Missense_Mutation_p.G442R	NM_003743	NP_003734	Q15788	NCOA1_HUMAN	nuclear receptor coactivator 1 isoform 1	442	Interaction with STAT3.|Ser-rich.								PAX3/NCOA1(8)	soft_tissue(8)|ovary(1)|lung(1)|skin(1)	11	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					AGGAAGTTTCGGATGCTCACC	0.463			T	PAX3	alveolar rhadomyosarcoma								33	70					0	0	0.000953801	0	0
NCOA1	8648	broad.mit.edu	37	2	24930526	24930526	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr2:24930526C>T	uc002rfk.2	+	11	2445	c.2187C>T	c.(2185-2187)TCC>TCT	p.S729S	NCOA1_uc010eye.2_Silent_p.S729S|NCOA1_uc002rfi.2_Silent_p.S578S|NCOA1_uc002rfj.2_Silent_p.S729S|NCOA1_uc002rfl.2_Silent_p.S729S	NM_003743	NP_003734	Q15788	NCOA1_HUMAN	nuclear receptor coactivator 1 isoform 1	729									PAX3/NCOA1(8)	soft_tissue(8)|ovary(1)|lung(1)|skin(1)	11	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					AAGGAAACTCCAGTATAAAAC	0.398			T	PAX3	alveolar rhadomyosarcoma								24	26					0	0	0.00278032	0	0
ASXL2	55252	broad.mit.edu	37	2	25973192	25973192	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr2:25973192G>A	uc002rgs.2	-	11	1454	c.1233C>T	c.(1231-1233)TCC>TCT	p.S411S	ASXL2_uc002rgt.1_Silent_p.S151S	NM_018263	NP_060733	Q76L83	ASXL2_HUMAN	additional sex combs like 2	411					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|protein binding			pancreas(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					ACACAGGCATGGATTTTGGTT	0.443													72	171					0	0	0.000781405	0	0
DPYSL5	56896	broad.mit.edu	37	2	27147817	27147817	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr2:27147817C>T	uc002rhu.3	+	3	482	c.324C>T	c.(322-324)TCC>TCT	p.S108S	DPYSL5_uc002rhv.3_Silent_p.S108S	NM_020134	NP_064519	Q9BPU6	DPYL5_HUMAN	dihydropyrimidinase-like 5	108					axon guidance|pyrimidine base catabolic process|signal transduction	cytosol	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides			ovary(2)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					AGGAGACCTCCCTTGTGGACG	0.617													9	34					0	0	0.000442599	0	0
SPDYA	245711	broad.mit.edu	37	2	29063175	29063175	+	Silent	SNP	C	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr2:29063175C>A	uc002rmj.2	+	7	896	c.690C>A	c.(688-690)CTC>CTA	p.L230L	SPDYA_uc002rmi.2_Silent_p.L230L|SPDYA_uc002rmk.2_Silent_p.L230L|SPDYA_uc002rml.2_Silent_p.L230L	NM_182756	NP_877433	Q5MJ70	SPDYA_HUMAN	speedy homolog A isoform 1	230					G1/S transition of mitotic cell cycle|multicellular organismal development|positive regulation of cell proliferation|response to DNA damage stimulus	nucleus	protein kinase binding			upper_aerodigestive_tract(1)|ovary(1)	2	Acute lymphoblastic leukemia(172;0.155)					ATTGTTCACTCTGTGGTAAAA	0.443													13	36					6.31663e-08	2.96135e-07	0.000308642	1	0
TRMT61B	55006	broad.mit.edu	37	2	29084142	29084142	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr2:29084142C>G	uc002rmm.2	-	3	867	c.835G>C	c.(835-837)GTA>CTA	p.V279L	TRMT61B_uc002rmn.2_Missense_Mutation_p.V279L|TRMT61B_uc010ezk.2_RNA	NM_017910	NP_060380	Q9BVS5	TR61B_HUMAN	tRNA methyltransferase 61 homolog B	279	S-adenosyl-L-methionine binding.						tRNA (adenine-N1-)-methyltransferase activity				0						TCTTTTCGTACCTCAAAACTT	0.318													13	42					0	0	0.00136819	0	0
CAPN13	92291	broad.mit.edu	37	2	30966384	30966384	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr2:30966384G>A	uc002rnn.2	-	12	1486	c.1310C>T	c.(1309-1311)TCA>TTA	p.S437L	CAPN13_uc002rnm.2_RNA|CAPN13_uc002rno.2_5'UTR	NM_144575	NP_653176	Q6MZZ7	CAN13_HUMAN	calpain 13	437					proteolysis	intracellular	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity			large_intestine(1)|ovary(1)	2	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.155)					TTTATTATTTGAGCTTTGGAC	0.458													63	115					0	0	0.000781405	0	0
BIRC6	57448	broad.mit.edu	37	2	32824895	32824896	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr2:32824895_32824896CC>TT	uc010ezu.2	+	70	14054_14055	c.13920_13921CC>TT	c.(13918-13923)CCCCCT>CCTTCT	p.P4641S		NM_016252	NP_057336	Q9NR09	BIRC6_HUMAN	baculoviral IAP repeat-containing 6	4641	Ubiquitin-conjugating.				anti-apoptosis|apoptosis	intracellular	acid-amino acid ligase activity|cysteine-type endopeptidase inhibitor activity|protein binding			ovary(5)|skin(4)|lung(2)|central_nervous_system(1)|breast(1)|pancreas(1)	14	Acute lymphoblastic leukemia(172;0.155)					CCAGTTCACCCCCTCTTGTGAA	0.391													29	53					0	0	6.4e-05	0	0
PLEKHH2	130271	broad.mit.edu	37	2	43934667	43934667	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr2:43934667C>A	uc010yny.1	+	11	2032	c.1949C>A	c.(1948-1950)CCC>CAC	p.P650H	PLEKHH2_uc002rte.3_Missense_Mutation_p.P650H|PLEKHH2_uc002rtf.3_Missense_Mutation_p.P649H	NM_172069	NP_742066	Q8IVE3	PKHH2_HUMAN	pleckstrin homology domain containing, family H	650	Ser-rich.					cytoplasm|cytoskeleton|integral to membrane	binding			skin(2)|central_nervous_system(1)	3		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)				CCAGGCAGCCCCAGAGCCATG	0.498													11	555					0.000673444	0.00313064	0.000673444	1	0
SRBD1	55133	broad.mit.edu	37	2	45715432	45715432	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr2:45715432C>T	uc002rus.2	-	15	1989	c.1913G>A	c.(1912-1914)AGC>AAC	p.S638N	SRBD1_uc010yoc.1_Missense_Mutation_p.S157N	NM_018079	NP_060549	Q8N5C6	SRBD1_HUMAN	S1 RNA binding domain 1	638				S -> G (in Ref. 1; AK056536).	nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		hydrolase activity, acting on ester bonds|RNA binding			central_nervous_system(1)	1		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)	LUSC - Lung squamous cell carcinoma(58;0.0917)|Lung(47;0.154)			AGCTTCAGGGCTGACACTGTA	0.413													37	65					0	0	0.000781405	0	0
NRXN1	9378	broad.mit.edu	37	2	50724557	50724557	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr2:50724557G>A	uc010fbq.2	-	14	4390	c.2913C>T	c.(2911-2913)TTC>TTT	p.F971F	NRXN1_uc002rxb.3_Silent_p.F603F|NRXN1_uc002rxe.3_Silent_p.F931F|NRXN1_uc002rxc.1_RNA	NM_001135659	NP_001129131	P58400	NRX1B_HUMAN	neurexin 1 isoform alpha2 precursor	Error:Variant_position_missing_in_P58400_after_alignment					angiogenesis|neuron cell-cell adhesion|neuronal signal transduction	cell surface|endocytic vesicle|integral to membrane|presynaptic membrane	cell adhesion molecule binding|receptor binding			ovary(2)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.192)	Lung(47;0.0813)|LUSC - Lung squamous cell carcinoma(58;0.116)			TCTTGAACTGGAAAAAAAGAT	0.403													17	23					0	0	0.000422831	0	0
SPTBN1	6711	broad.mit.edu	37	2	54886356	54886356	+	Silent	SNP	C	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr2:54886356C>A	uc002rxu.2	+	31	6558	c.6309C>A	c.(6307-6309)CCC>CCA	p.P2103P	SPTBN1_uc002rxx.2_Silent_p.P2090P|SPTBN1_uc002rxy.2_Silent_p.P248P|SPTBN1_uc010you.1_Silent_p.P93P	NM_003128	NP_003119	Q01082	SPTB2_HUMAN	spectrin, beta, non-erythrocytic 1 isoform 1	2103	Spectrin 17.				actin filament capping|axon guidance	cytosol|nucleolus|plasma membrane|sarcomere|spectrin	actin binding|calmodulin binding|protein binding|structural constituent of cytoskeleton			ovary(3)|breast(2)|central_nervous_system(2)|skin(1)	8			Lung(47;0.24)			CGCCTTCTCCCGAGCCGAGCA	0.577													10	269					0.00136819	0.00634428	0.00136819	1	0
ARHGAP25	9938	broad.mit.edu	37	2	69049560	69049560	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr2:69049560C>T	uc002seu.2	+	10	1650	c.1286C>T	c.(1285-1287)CCA>CTA	p.P429L	ARHGAP25_uc010fdg.2_Missense_Mutation_p.P430L|ARHGAP25_uc010yql.1_Missense_Mutation_p.P390L|ARHGAP25_uc002sew.2_Missense_Mutation_p.P422L|ARHGAP25_uc002sex.2_Missense_Mutation_p.P423L|ARHGAP25_uc002sey.2_Missense_Mutation_p.P156L	NM_001007231	NP_001007232	P42331	RHG25_HUMAN	Rho GTPase activating protein 25 isoform a	429					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(2)|breast(2)	4						AGGGAAAAGCCAGGAGACTGG	0.498													43	85					0	0	0.00148497	0	0
TACR1	6869	broad.mit.edu	37	2	75425772	75425772	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr2:75425772C>T	uc002sng.2	-	1	874	c.289G>A	c.(289-291)GAA>AAA	p.E97K	TACR1_uc002snh.2_Missense_Mutation_p.E97K	NM_001058	NP_001049	P25103	NK1R_HUMAN	tachykinin receptor 1 isoform long	97	Extracellular (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|detection of abiotic stimulus|mechanosensory behavior	integral to plasma membrane	protein binding			ovary(1)	1					Aprepitant(DB00673)|Ketamine(DB01221)|Vapreotide(DB04894)	TAGTACCATTCGTTGTGGACA	0.517													31	96					0	0	0.000814825	0	0
FAM176A	84141	broad.mit.edu	37	2	75745192	75745192	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr2:75745192G>A	uc002sni.2	-	3	553	c.75C>T	c.(73-75)TCC>TCT	p.S25S	FAM176A_uc002snj.1_Silent_p.S12S|FAM176A_uc002snk.1_Silent_p.S25S	NM_001135032	NP_001128504	Q9H8M9	F176A_HUMAN	family with sequence similarity 176, member A	25	Necessary for the localization and biological activity.				apoptosis|autophagy	endoplasmic reticulum membrane|integral to membrane|lysosomal membrane|plasma membrane					0						CTGAGACAAAGGAATAGGCCG	0.597													11	21					0	0	0.000673444	0	0
Unknown	0	broad.mit.edu	37	2	90008077	90008077	+	RNA	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr2:90008077G>A	uc010fhm.2	+	9		c.1250G>A								Parts of antibodies, mostly variable regions.																		ATCTGGGACAGATTTCACTCT	0.502													36	66					0	0	0.000781405	0	0
FER1L5	90342	broad.mit.edu	37	2	97363284	97363284	+	Nonsense_Mutation	SNP	A	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr2:97363284A>T	uc010fia.2	+	37	4186	c.4186A>T	c.(4186-4188)AAG>TAG	p.K1396*	FER1L5_uc002sws.3_Nonsense_Mutation_p.K114*|FER1L5_uc010fib.1_RNA|FER1L5_uc002swt.3_Nonsense_Mutation_p.K114*|FER1L5_uc010yus.1_Nonsense_Mutation_p.K113*	NM_001113382	NP_001106853	A0AVI2	FR1L5_HUMAN	fer-1-like 5 isoform 2	1396						integral to membrane				ovary(1)	1						CCTCTACAGAAAGTTCTGGTT	0.557													11	15					0	0	0.00244969	0	0
CNGA3	1261	broad.mit.edu	37	2	99012882	99012882	+	Missense_Mutation	SNP	A	C	C			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr2:99012882A>C	uc002syt.2	+	8	1666	c.1249A>C	c.(1249-1251)ATT>CTT	p.I417L	CNGA3_uc002syu.2_Missense_Mutation_p.I399L|CNGA3_uc010fij.2_Missense_Mutation_p.I421L	NM_001298	NP_001289	Q16281	CNGA3_HUMAN	cyclic nucleotide gated channel alpha 3 isoform	417					signal transduction|visual perception	integral to membrane	cGMP binding			ovary(5)|upper_aerodigestive_tract(1)	6						CCAGGCCAAGATTGATTCCAT	0.512													24	47					0	0	0.00278032	0	0
LONRF2	164832	broad.mit.edu	37	2	100925618	100925618	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr2:100925618G>A	uc002tal.3	-	2	1389	c.749C>T	c.(748-750)GCT>GTT	p.A250V	LONRF2_uc010yvs.1_RNA	NM_198461	NP_940863	Q1L5Z9	LONF2_HUMAN	LON peptidase N-terminal domain and ring finger	250	TPR 4.				proteolysis		ATP-dependent peptidase activity|zinc ion binding			large_intestine(1)|skin(1)	2						ATCTTGGAGAGCTTGCTCATA	0.373													27	58					0	0	0.000878237	0	0
NPAS2	4862	broad.mit.edu	37	2	101587467	101587467	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr2:101587467G>A	uc002tap.1	+	12	1357	c.1071G>A	c.(1069-1071)CGG>CGA	p.R357R	NPAS2_uc010yvt.1_Silent_p.R422R	NM_002518	NP_002509	Q99743	NPAS2_HUMAN	neuronal PAS domain protein 2	357					central nervous system development|positive regulation of transcription from RNA polymerase II promoter|rhythmic process	transcription factor complex	DNA binding|Hsp90 protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			ovary(3)|upper_aerodigestive_tract(1)	4						CAGATGTCCGGGTGGAAAGGA	0.567													23	50					0	0	0.00106085	0	0
ST6GAL2	84620	broad.mit.edu	37	2	107459714	107459714	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr2:107459714C>T	uc002tdq.2	-	2	839	c.720G>A	c.(718-720)GGG>GGA	p.G240G	ST6GAL2_uc002tdr.2_Silent_p.G240G|ST6GAL2_uc002tds.3_Silent_p.G240G	NM_001142351	NP_001135823	Q96JF0	SIAT2_HUMAN	ST6 beta-galactosamide	240	Lumenal (Potential).				growth|multicellular organismal development|oligosaccharide metabolic process|protein glycosylation	Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,6-sialyltransferase activity			pancreas(6)|ovary(4)|skin(1)	11						CCTCCCGCTTCCCGCGGAAGC	0.677													4	5					0	0	0.00024832	0	0
ST6GAL2	84620	broad.mit.edu	37	2	107460302	107460302	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr2:107460302G>A	uc002tdq.2	-	2	251	c.132C>T	c.(130-132)TCC>TCT	p.S44S	ST6GAL2_uc002tdr.2_Silent_p.S44S|ST6GAL2_uc002tds.3_Silent_p.S44S	NM_001142351	NP_001135823	Q96JF0	SIAT2_HUMAN	ST6 beta-galactosamide	44	Lumenal (Potential).				growth|multicellular organismal development|oligosaccharide metabolic process|protein glycosylation	Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,6-sialyltransferase activity			pancreas(6)|ovary(4)|skin(1)	11						TCTCCAGGAAGGAGAGGGAGC	0.627													21	32					0	0	0.00152264	0	0
RANBP2	5903	broad.mit.edu	37	2	109384509	109384509	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr2:109384509C>T	uc002tem.3	+	20	7640	c.7514C>T	c.(7513-7515)CCA>CTA	p.P2505L		NM_006267	NP_006258	P49792	RBP2_HUMAN	RAN binding protein 2	2505					carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA transport|protein folding|protein import into nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore	peptidyl-prolyl cis-trans isomerase activity|Ran GTPase binding|zinc ion binding		RANBP2/ALK(16)	soft_tissue(16)|lung(1)|pancreas(1)	18						GAAACAACACCAAAAGCAGTG	0.383													104	176					0	0	0.000781405	0	0
ANAPC1	64682	broad.mit.edu	37	2	112620125	112620125	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr2:112620125C>T	uc002thi.2	-	10	1350	c.1103G>A	c.(1102-1104)AGG>AAG	p.R368K		NM_022662	NP_073153	Q9H1A4	APC1_HUMAN	anaphase promoting complex subunit 1	368					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination	anaphase-promoting complex|cytosol|nucleoplasm				skin(2)	2						AATGTTGAACCTTTGCACCCC	0.428													3	14					0	0	6.4e-05	0	0
MERTK	10461	broad.mit.edu	37	2	112751933	112751933	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr2:112751933G>A	uc002thk.1	+	9	1524	c.1402G>A	c.(1402-1404)GGA>AGA	p.G468R	MERTK_uc002thl.1_Missense_Mutation_p.G292R	NM_006343	NP_006334	Q12866	MERTK_HUMAN	MER receptor tyrosine kinase precursor	468	Fibronectin type-III 2.|Extracellular (Potential).				cell surface receptor linked signaling pathway|cell-cell signaling|leukocyte migration	integral to plasma membrane|soluble fraction	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(6)|upper_aerodigestive_tract(1)|stomach(1)|kidney(1)	9						CACCAGAGGGGGAGTTGGGCC	0.542													51	104					0	0	0.000781405	0	0
PSD4	23550	broad.mit.edu	37	2	113940600	113940600	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr2:113940600C>T	uc002tjc.2	+	2	750	c.567C>T	c.(565-567)CCC>CCT	p.P189P	PSD4_uc002tjd.2_5'UTR|PSD4_uc002tje.2_Silent_p.P188P|PSD4_uc002tjf.2_5'Flank	NM_012455	NP_036587	Q8NDX1	PSD4_HUMAN	pleckstrin and Sec7 domain containing 4	189					regulation of ARF protein signal transduction	cytoplasm|plasma membrane	ARF guanyl-nucleotide exchange factor activity			ovary(2)	2						GCTGTCTCCCCACGCCCCCTG	0.642													20	30					0	0	0.00188189	0	0
CCDC93	54520	broad.mit.edu	37	2	118688702	118688702	+	Nonsense_Mutation	SNP	T	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr2:118688702T>A	uc002tlj.2	-	23	1879	c.1753A>T	c.(1753-1755)AAA>TAA	p.K585*		NM_019044	NP_061917	Q567U6	CCD93_HUMAN	coiled-coil domain containing 93	585	Potential.									large_intestine(1)|ovary(1)	2						CTTCTCATTTTGTTCTCTTGC	0.418													71	119					0	0	0.000781405	0	0
CNTNAP5	129684	broad.mit.edu	37	2	125261995	125261995	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr2:125261995C>T	uc002tno.2	+	8	1550	c.1186C>T	c.(1186-1188)CGA>TGA	p.R396*	CNTNAP5_uc010flu.2_Nonsense_Mutation_p.R397*	NM_130773	NP_570129	Q8WYK1	CNTP5_HUMAN	contactin associated protein-like 5 precursor	396	Laminin G-like 2.|Extracellular (Potential).				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(10)	10				BRCA - Breast invasive adenocarcinoma(221;0.248)		TTTCCAGTTTCGAACATGGAA	0.552													15	25					0	0	0.000422831	0	0
IWS1	55677	broad.mit.edu	37	2	128281289	128281289	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr2:128281289G>A	uc002ton.2	-	2	416	c.113C>T	c.(112-114)TCC>TTC	p.S38F	IWS1_uc010yzl.1_RNA|IWS1_uc010fma.2_Intron	NM_017969	NP_060439	Q96ST2	IWS1_HUMAN	IWS1 homolog	38					transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0735)		GTCTGATCCGGAGTGTTGCTC	0.443													70	153					0	0	0.000781405	0	0
FAM123C	205147	broad.mit.edu	37	2	131520776	131520776	+	Silent	SNP	C	T	T	rs148342332	byFrequency	TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr2:131520776C>T	uc002trw.2	+	2	1321	c.1131C>T	c.(1129-1131)CCC>CCT	p.P377P	FAM123C_uc010fmv.2_Silent_p.P377P|FAM123C_uc010fms.1_Silent_p.P377P|FAM123C_uc010fmt.1_Silent_p.P377P|FAM123C_uc010fmu.1_Silent_p.P377P	NM_152698	NP_689911	Q8N944	F123C_HUMAN	hypothetical protein LOC205147	377										pancreas(2)|ovary(1)	3	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.13)		GCGAGCAGCCCGAATCCGTGT	0.637													17	25					0	0	0.00074312	0	0
R3HDM1	23518	broad.mit.edu	37	2	136433015	136433015	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr2:136433015C>T	uc002tuo.2	+	19	2531	c.2161C>T	c.(2161-2163)CAA>TAA	p.Q721*	R3HDM1_uc010fni.2_Nonsense_Mutation_p.Q720*|R3HDM1_uc002tup.2_Nonsense_Mutation_p.Q666*|R3HDM1_uc010zbh.1_Nonsense_Mutation_p.Q469*	NM_015361	NP_056176	Q15032	R3HD1_HUMAN	R3H domain containing 1	721							nucleic acid binding			skin(1)	1				BRCA - Breast invasive adenocarcinoma(221;0.127)		AAATCAGATTCAAGGAGTGGT	0.433													20	40					0	0	0.00229938	0	0
THSD7B	80731	broad.mit.edu	37	2	138033575	138033575	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr2:138033575G>A	uc002tva.1	+	11	2386	c.2386G>A	c.(2386-2388)GGA>AGA	p.G796R	THSD7B_uc010zbj.1_Intron|THSD7B_uc002tvb.2_Missense_Mutation_p.G686R	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		TGAAGCCTGTGGAAAGGGGTT	0.393													4	5					0	0	0.000602214	0	0
THSD7B	80731	broad.mit.edu	37	2	138163337	138163337	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr2:138163337G>A	uc002tva.1	+	12	2562	c.2562G>A	c.(2560-2562)ACG>ACA	p.T854T	THSD7B_uc010zbj.1_Intron|THSD7B_uc002tvb.2_Silent_p.T744T	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		CCTGCTCCACGAACTGTGAAG	0.458													4	15					0	0	0.00024832	0	0
LRP1B	53353	broad.mit.edu	37	2	141777559	141777559	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr2:141777559C>T	uc002tvj.1	-	12	2874	c.1902G>A	c.(1900-1902)CAG>CAA	p.Q634Q	LRP1B_uc010fnl.1_Intron	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	634	Extracellular (Potential).|LDL-receptor class B 6.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TCTTCCGACTCTGAGAAGCTT	0.418										TSP Lung(27;0.18)			8	11					0	0	0.000442599	0	0
MBD5	55777	broad.mit.edu	37	2	149227571	149227571	+	Silent	SNP	T	C	C			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr2:149227571T>C	uc002twm.3	+	9	3047	c.2059T>C	c.(2059-2061)TTG>CTG	p.L687L	MBD5_uc010zbs.1_RNA|MBD5_uc010fns.2_Silent_p.L687L|MBD5_uc002twn.1_Silent_p.L128L	NM_018328	NP_060798	Q9P267	MBD5_HUMAN	methyl-CpG binding domain protein 5	687						chromosome|nucleus	chromatin binding|DNA binding			skin(3)|ovary(2)	5				BRCA - Breast invasive adenocarcinoma(221;0.0569)		TGGACCTGACTTGCTAAGGAA	0.443													4	16					0	0	0.00024832	0	0
MARCH7	64844	broad.mit.edu	37	2	160604811	160604811	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr2:160604811C>T	uc002uax.2	+	5	1132	c.1010C>T	c.(1009-1011)CCC>CTC	p.P337L	MARCH7_uc010foq.2_Missense_Mutation_p.P337L|MARCH7_uc010zcn.1_Missense_Mutation_p.P281L|MARCH7_uc010for.2_Missense_Mutation_p.P299L|MARCH7_uc002uay.2_RNA	NM_022826	NP_073737	Q9H992	MARH7_HUMAN	axotrophin	337	Ser-rich.						ligase activity|zinc ion binding				0						TCTGAAGTTCCCGATAATAGG	0.408													22	40					0	0	0.00229938	0	0
SCN1A	6323	broad.mit.edu	37	2	166848506	166848506	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr2:166848506G>A	uc010zcz.1	-	26	5264	c.5246C>T	c.(5245-5247)TCT>TTT	p.S1749F		NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	1760	IV.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	AATTCCAACAGATGGGTTCCC	0.453													22	49					0	0	0.00229938	0	0
SCN9A	6335	broad.mit.edu	37	2	167168253	167168253	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr2:167168253G>A	uc010fpl.2	-	2	355	c.14C>T	c.(13-15)CCT>CTT	p.P5L		NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	5						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	TCCTGGGGGAGGCAACATTGC	0.403													21	45					0	0	0.00121646	0	0
LRP2	4036	broad.mit.edu	37	2	170019101	170019101	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr2:170019101G>A	uc002ues.2	-	63	11981	c.11768C>T	c.(11767-11769)CCG>CTG	p.P3923L		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	3923	Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	TTTAGGGGTCGGTTTTCTACC	0.383													16	29					0	0	0.000422831	0	0
LRP2	4036	broad.mit.edu	37	2	170060581	170060581	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr2:170060581C>T	uc002ues.2	-	42	8129	c.7916G>A	c.(7915-7917)GGA>GAA	p.G2639E		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	2639	LDL-receptor class B 29.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	AGTGTTGATTCCCCTGGGCTG	0.458													49	115					0	0	0.000781405	0	0
KLHL23	151230	broad.mit.edu	37	2	170592141	170592141	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr2:170592141A>G	uc002ufh.1	+	4	955	c.617A>G	c.(616-618)AAG>AGG	p.K206R	KLHL23_uc002ufi.1_Missense_Mutation_p.K206R	NM_144711	NP_653312	Q8NBE8	KLH23_HUMAN	kelch-like 23	206	BACK.										0						CCAGTTATTAAGTGGACTGCT	0.348													15	38					0	0	0.000566183	0	0
TTN	7273	broad.mit.edu	37	2	179425768	179425768	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr2:179425768C>T	uc010zfg.1	-	275	77611	c.77387G>A	c.(77386-77388)CGA>CAA	p.R25796Q	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.R19491Q|TTN_uc010zfi.1_Missense_Mutation_p.R19424Q|TTN_uc010zfj.1_Missense_Mutation_p.R19299Q	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	26723							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AATAACGTCTCGGAACTTGAC	0.448													25	73					0	0	0.00127121	0	0
TTN	7273	broad.mit.edu	37	2	179576050	179576050	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr2:179576050G>A	uc010zfg.1	-	94	24405	c.24181C>T	c.(24181-24183)CGA>TGA	p.R8061*	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Nonsense_Mutation_p.R4722*	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	8988							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTCAATTGTCGAGAAAATGAT	0.348													13	27					0	0	0.00185496	0	0
TTN	7273	broad.mit.edu	37	2	179584294	179584294	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr2:179584294G>A	uc010zfg.1	-	79	20417	c.20193C>T	c.(20191-20193)TCC>TCT	p.S6731S	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.S3392S	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	7658							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AAACATGGACGGATACAGTGC	0.388													13	35					0	0	0.000422831	0	0
TTN	7273	broad.mit.edu	37	2	179602902	179602902	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr2:179602902G>A	uc010zfg.1	-	46	10770	c.10546C>T	c.(10546-10548)CTG>TTG	p.L3516L	TTN_uc010zfh.1_Silent_p.L4589L|TTN_uc010zfi.1_Silent_p.L4522L|TTN_uc010zfj.1_Silent_p.L4397L|TTN_uc002umz.1_Silent_p.L177L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	4443							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGGGTTCTCAGGATTTCAAGG	0.458													5	12					0	0	0.000602214	0	0
TTN	7273	broad.mit.edu	37	2	179605174	179605174	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr2:179605174G>A	uc010zfh.1	-	46	12497	c.12273C>T	c.(12271-12273)ATC>ATT	p.I4091I	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Silent_p.I4024I|TTN_uc010zfj.1_Silent_p.I3899I|TTN_uc002umz.1_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCTGACTCAAGATGAGCGCAC	0.473													3	7					0	0	6.4e-05	0	0
TTN	7273	broad.mit.edu	37	2	179614007	179614008	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr2:179614007_179614008GG>AA	uc002unb.2	-	46	13343_13344	c.13119_13120CC>TT	c.(13117-13122)CACCAA>CATTAA	p.Q4374*	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CCCTCTGCTTGGTGCAGCTTTG	0.361													4	10					0	0	6.4e-05	0	0
TTN	7273	broad.mit.edu	37	2	179640909	179640909	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr2:179640909G>A	uc010zfg.1	-	28	5906	c.5682C>T	c.(5680-5682)ATC>ATT	p.I1894I	TTN_uc010zfh.1_Silent_p.I1848I|TTN_uc010zfi.1_Silent_p.I1848I|TTN_uc010zfj.1_Silent_p.I1848I|TTN_uc002unb.2_Silent_p.I1894I|uc002unc.1_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	1894							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CCAGGTAATGGATACCATCAT	0.483													40	108					0	0	0.00222228	0	0
TTN	7273	broad.mit.edu	37	2	179645916	179645916	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr2:179645916C>T	uc010zfg.1	-	21	3679	c.3455G>A	c.(3454-3456)GGA>GAA	p.G1152E	TTN_uc010zfh.1_Missense_Mutation_p.G1106E|TTN_uc010zfi.1_Missense_Mutation_p.G1106E|TTN_uc010zfj.1_Missense_Mutation_p.G1106E|TTN_uc002unb.2_Missense_Mutation_p.G1152E	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	1152							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGTGTATTCTCCAGCATCATC	0.368													12	19					0	0	0.000308642	0	0
ZNF804A	91752	broad.mit.edu	37	2	185803733	185803733	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr2:185803733C>T	uc002uph.2	+	4	4204	c.3610C>T	c.(3610-3612)CCT>TCT	p.P1204S		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	1204						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						TACTGTCATCCCTTTGCAACC	0.433													60	120					0	0	0.000781405	0	0
COL3A1	1281	broad.mit.edu	37	2	189850436	189850436	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr2:189850436G>A	uc002uqj.1	+	4	496	c.379G>A	c.(379-381)GGA>AGA	p.G127R		NM_000090	NP_000081	P02461	CO3A1_HUMAN	collagen type III alpha 1 preproprotein	127					axon guidance|cell-matrix adhesion|collagen biosynthetic process|collagen fibril organization|fibril organization|heart development|integrin-mediated signaling pathway|negative regulation of immune response|peptide cross-linking|platelet activation|response to cytokine stimulus|response to radiation|skin development|transforming growth factor beta receptor signaling pathway	collagen type III|extracellular space	extracellular matrix structural constituent|integrin binding|platelet-derived growth factor binding			central_nervous_system(7)|ovary(4)|large_intestine(2)	13			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.141)		Collagenase(DB00048)|Palifermin(DB00039)	TGGTATTCCAGGACAACCAGG	0.443													3	9					0	0	0.00024832	0	0
COL3A1	1281	broad.mit.edu	37	2	189871091	189871091	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr2:189871091C>T	uc002uqj.1	+	43	3231	c.3114C>T	c.(3112-3114)GGC>GGT	p.G1038G		NM_000090	NP_000081	P02461	CO3A1_HUMAN	collagen type III alpha 1 preproprotein	1038	Triple-helical region.				axon guidance|cell-matrix adhesion|collagen biosynthetic process|collagen fibril organization|fibril organization|heart development|integrin-mediated signaling pathway|negative regulation of immune response|peptide cross-linking|platelet activation|response to cytokine stimulus|response to radiation|skin development|transforming growth factor beta receptor signaling pathway	collagen type III|extracellular space	extracellular matrix structural constituent|integrin binding|platelet-derived growth factor binding			central_nervous_system(7)|ovary(4)|large_intestine(2)	13			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.141)		Collagenase(DB00048)|Palifermin(DB00039)	GTGAAAATGGCTCTCCTGGTG	0.463													11	25					0	0	0.000978159	0	0
HECW2	57520	broad.mit.edu	37	2	197090531	197090531	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr2:197090531G>A	uc002utm.1	-	23	4164	c.3981C>T	c.(3979-3981)TTC>TTT	p.F1327F	HECW2_uc002utl.1_Silent_p.F971F	NM_020760	NP_065811	Q9P2P5	HECW2_HUMAN	HECT, C2 and WW domain containing E3 ubiquitin	1327	HECT.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm	ubiquitin-protein ligase activity			skin(5)|ovary(5)|lung(4)|pancreas(2)|central_nervous_system(1)|kidney(1)	18						GCCGTGTGAAGAAGGCATCCA	0.373													14	30					0	0	0.000566183	0	0
WDR12	55759	broad.mit.edu	37	2	203748421	203748422	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr2:203748421_203748422CC>AA	uc002uzl.2	-	11	1781_1782	c.1031_1032GG>TT	c.(1030-1032)TGG>TTT	p.W344F	WDR12_uc010ftt.2_Missense_Mutation_p.W344F	NM_018256	NP_060726	Q9GZL7	WDR12_HUMAN	WD repeat domain 12 protein	344	WD 6.|Sufficient for nucleolar localization.				cell proliferation|maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	nucleoplasm|PeBoW complex|preribosome, large subunit precursor	protein binding				0						CTGATGTCACCCAACCAGTATG	0.401													11	557					0	0	6.4e-05	0	0
NRP2	8828	broad.mit.edu	37	2	206608133	206608133	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr2:206608133G>A	uc002vaw.2	+	9	2289	c.1498G>A	c.(1498-1500)GGT>AGT	p.G500S	NRP2_uc002vat.2_Missense_Mutation_p.G500S|NRP2_uc002vau.2_Missense_Mutation_p.G500S|NRP2_uc002vav.2_Missense_Mutation_p.G500S|NRP2_uc002vax.2_Missense_Mutation_p.G500S|NRP2_uc002vay.2_Missense_Mutation_p.G500S|NRP2_uc010fud.2_Missense_Mutation_p.G500S	NM_201266	NP_957718	O60462	NRP2_HUMAN	neuropilin 2 isoform 1 precursor	500	Extracellular (Potential).|F5/8 type C 2.				angiogenesis|axon guidance|cell adhesion	integral to membrane|membrane fraction|plasma membrane	heparin binding|metal ion binding|semaphorin receptor activity|vascular endothelial growth factor receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4						GACAGTGAAAGGTGTCATCAT	0.577													27	67					0	0	0.000720815	0	0
IDH1	3417	broad.mit.edu	37	2	209101890	209101890	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr2:209101890C>T	uc002vcs.2	-	10	1404	c.1158G>A	c.(1156-1158)GTG>GTA	p.V386V	IDH1_uc002vct.2_Silent_p.V386V|IDH1_uc002vcu.2_Silent_p.V386V	NM_005896	NP_005887	O75874	IDHC_HUMAN	isocitrate dehydrogenase 1 (NADP+), soluble	386					2-oxoglutarate metabolic process|cellular lipid metabolic process|glyoxylate cycle|isocitrate metabolic process|NADPH regeneration|tricarboxylic acid cycle	cytosol|peroxisomal matrix	isocitrate dehydrogenase (NADP+) activity|magnesium ion binding|NAD binding|protein homodimerization activity			central_nervous_system(2156)|haematopoietic_and_lymphoid_tissue(606)|bone(74)|thyroid(22)|large_intestine(4)|skin(2)|prostate(2)|autonomic_ganglia(1)|soft_tissue(1)	2868				Epithelial(149;0.0322)|LUSC - Lung squamous cell carcinoma(261;0.0711)|Lung(261;0.136)		CAGAACGTTGCACACTAACGG	0.353			Mis		gliobastoma 								6	9					0	0	0.00198382	0	0
SMARCAL1	50485	broad.mit.edu	37	2	217279966	217279966	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr2:217279966C>T	uc002vgc.3	+	3	869	c.539C>T	c.(538-540)TCC>TTC	p.S180F	SMARCAL1_uc010fvf.2_RNA|SMARCAL1_uc002vgd.3_Missense_Mutation_p.S180F|SMARCAL1_uc010fvg.2_Missense_Mutation_p.S180F	NM_014140	NP_054859	Q9NZC9	SMAL1_HUMAN	SWI/SNF-related matrix-associated	180					chromatin modification|DNA metabolic process|regulation of transcription from RNA polymerase II promoter	nucleus	ATP binding|DNA binding|DNA helicase activity|DNA-dependent ATPase activity			ovary(3)|breast(3)|skin(1)	7		Renal(323;0.0458)		Epithelial(149;9.48e-06)|all cancers(144;0.000621)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.0111)		CCAGCTCATTCCTCTGGACAG	0.512									Schimke_Immuno-Osseous_Dysplasia				43	108					0	0	0.00285205	0	0
CCDC108	255101	broad.mit.edu	37	2	219903182	219903182	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr2:219903182G>A	uc002vjl.1	-	4	356	c.272C>T	c.(271-273)TCC>TTC	p.S91F	CCDC108_uc010zkp.1_Missense_Mutation_p.S80F|CCDC108_uc010zkq.1_Missense_Mutation_p.S26F|CCDC108_uc002vjn.2_Missense_Mutation_p.S26F	NM_194302	NP_919278	Q6ZU64	CC108_HUMAN	coiled-coil domain containing 108 isoform 1	91						integral to membrane	structural molecule activity			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4		Renal(207;0.0915)		Epithelial(149;1.12e-06)|all cancers(144;0.000196)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		ACTCAGGCAGGATCCACCAGA	0.592													16	32					0	0	0.00074312	0	0
CCDC108	255101	broad.mit.edu	37	2	219903229	219903229	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr2:219903229G>A	uc002vjl.1	-	4	309	c.225C>T	c.(223-225)GTC>GTT	p.V75V	CCDC108_uc010zkp.1_Silent_p.V64V|CCDC108_uc010zkq.1_Silent_p.V10V|CCDC108_uc002vjn.2_Silent_p.V10V	NM_194302	NP_919278	Q6ZU64	CC108_HUMAN	coiled-coil domain containing 108 isoform 1	75						integral to membrane	structural molecule activity			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4		Renal(207;0.0915)		Epithelial(149;1.12e-06)|all cancers(144;0.000196)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		TGGACCTCACGACGGAGCTTG	0.592													18	26					0	0	0.00121646	0	0
PTPRN	5798	broad.mit.edu	37	2	220167205	220167205	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr2:220167205G>A	uc002vkz.2	-	6	737	c.648C>T	c.(646-648)TCC>TCT	p.S216S	PTPRN_uc010zlc.1_Silent_p.S126S|PTPRN_uc002vla.2_Silent_p.S216S	NM_002846	NP_002837	Q16849	PTPRN_HUMAN	protein tyrosine phosphatase, receptor type, N	216	Extracellular (Potential).				response to reactive oxygen species	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(2)|lung(1)|skin(1)	4		Renal(207;0.0474)		Epithelial(149;4.22e-07)|all cancers(144;8.82e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)|STAD - Stomach adenocarcinoma(1183;0.0875)		AGCCATCACGGGAGCCAAACT	0.617													29	54					0	0	0.001512	0	0
INHA	3623	broad.mit.edu	37	2	220439451	220439451	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr2:220439451C>T	uc002vmk.1	+	2	448	c.304C>T	c.(304-306)CTG>TTG	p.L102L		NM_002191	NP_002182	P05111	INHA_HUMAN	inhibin alpha subunit precursor	102					cell cycle arrest|cell surface receptor linked signaling pathway|cell-cell signaling|erythrocyte differentiation|hemoglobin biosynthetic process|induction of apoptosis|negative regulation of B cell differentiation|negative regulation of follicle-stimulating hormone secretion|negative regulation of interferon-gamma biosynthetic process|negative regulation of macrophage differentiation|negative regulation of phosphorylation|nervous system development|ovarian follicle development|positive regulation of follicle-stimulating hormone secretion|regulation of cell proliferation|response to external stimulus|skeletal system development	inhibin A complex|inhibin-betaglycan-ActRII complex	cytokine activity|growth factor activity|hormone activity|signal transducer activity			ovary(1)	1		Renal(207;0.0183)		Epithelial(149;4.58e-07)|all cancers(144;4.31e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00802)		TGCCAGAGGGCTGGCCCAGGA	0.617													7	12					0	0	0.000673444	0	0
EPHA4	2043	broad.mit.edu	37	2	222428737	222428737	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr2:222428737C>T	uc002vmq.2	-	3	579	c.537G>A	c.(535-537)AAG>AAA	p.K179K	EPHA4_uc002vmr.2_Silent_p.K179K|EPHA4_uc010zlm.1_Silent_p.K120K|EPHA4_uc010zln.1_Silent_p.K179K	NM_004438	NP_004429	P54764	EPHA4_HUMAN	ephrin receptor EphA4 precursor	179	Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(6)|large_intestine(2)|central_nervous_system(2)|urinary_tract(1)|skin(1)	12		Renal(207;0.0183)		Epithelial(121;5.38e-09)|all cancers(144;2.47e-06)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(261;0.0154)		GGTAAAACCCCTTTTTGCTTA	0.512													34	81					0	0	0.000814825	0	0
COL4A3	1285	broad.mit.edu	37	2	228137770	228137771	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr2:228137770_228137771GG>AA	uc002vom.1	+	26	2026_2027	c.1864_1865GG>AA	c.(1864-1866)GGA>AAA	p.G622K	COL4A3_uc002von.1_Missense_Mutation_p.G622K|COL4A3_uc002voo.1_Missense_Mutation_p.G622K|COL4A3_uc002vop.1_Missense_Mutation_p.G622K|uc002voq.1_Intron|uc002vor.1_Intron	NM_000091	NP_000082	Q01955	CO4A3_HUMAN	alpha 3 type IV collagen isoform 1 precursor	622	Triple-helical region.				activation of caspase activity|axon guidance|blood circulation|cell adhesion|cell proliferation|cell surface receptor linked signaling pathway|glomerular basement membrane development|induction of apoptosis|negative regulation of angiogenesis|negative regulation of cell proliferation|sensory perception of sound	collagen type IV	extracellular matrix structural constituent|integrin binding|metalloendopeptidase inhibitor activity			skin(2)|ovary(1)	3		all_lung(227;0.00101)|Lung NSC(271;0.00278)|Renal(207;0.0112)|Ovarian(221;0.0129)|all_hematologic(139;0.211)|Esophageal squamous(248;0.247)		Epithelial(121;1.17e-46)|all cancers(144;6.87e-42)|Lung(261;0.0137)|LUSC - Lung squamous cell carcinoma(224;0.0187)		CGGACCCCAAGGAGAACCTGGT	0.624													13	38					0	0	6.4e-05	0	0
SPHKAP	80309	broad.mit.edu	37	2	228882950	228882950	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr2:228882950C>T	uc002vpq.2	-	7	2667	c.2620G>A	c.(2620-2622)GAG>AAG	p.E874K	SPHKAP_uc002vpp.2_Missense_Mutation_p.E874K|SPHKAP_uc010zlx.1_Missense_Mutation_p.E874K	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	874						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		TCCTCAGCCTCCTGGGAACCA	0.502													58	117					0	0	0.000781405	0	0
DNER	92737	broad.mit.edu	37	2	230456412	230456412	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr2:230456412G>A	uc002vpv.2	-	2	616	c.469C>T	c.(469-471)CCT>TCT	p.P157S		NM_139072	NP_620711	Q8NFT8	DNER_HUMAN	delta-notch-like EGF repeat-containing	157	Extracellular (Potential).				central nervous system development|endocytosis|neuron migration|Notch signaling pathway|synapse assembly	dendrite|early endosome|integral to membrane|plasma membrane	calcium ion binding|clathrin binding|transmembrane receptor activity			lung(5)|ovary(2)|skin(1)	8		all_lung(227;0.00413)|Renal(207;0.0113)|Lung NSC(271;0.0211)|all_hematologic(139;0.105)|Acute lymphoblastic leukemia(138;0.175)		Epithelial(121;1.4e-11)|all cancers(144;7.7e-09)|LUSC - Lung squamous cell carcinoma(224;0.034)|Lung(119;0.0375)		TGAGTAGCAGGAACAGGCTGA	0.552													15	48					0	0	0.000566183	0	0
C2orf52	151477	broad.mit.edu	37	2	232373837	232373837	+	Missense_Mutation	SNP	G	C	C	rs143638096	byFrequency	TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr2:232373837G>C	uc002vrx.1	-	3	582	c.254C>G	c.(253-255)CCG>CGG	p.P85R		NR_024079				RecName: Full=Uncharacterized protein C2orf52;												0		Renal(207;0.025)|all_hematologic(139;0.094)|Acute lymphoblastic leukemia(138;0.164)		Epithelial(121;5.72e-11)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(119;0.014)		GCCACTCATCGGGAACCCCCT	0.502													4	187					0	0	0.00024832	0	0
CHRND	1144	broad.mit.edu	37	2	233396072	233396072	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr2:233396072G>A	uc002vsw.2	+	8	835	c.831G>A	c.(829-831)AAG>AAA	p.K277K	CHRND_uc010zmg.1_Silent_p.K262K|CHRND_uc010fyc.2_Silent_p.K150K|CHRND_uc010zmh.1_Silent_p.K83K	NM_000751	NP_000742	Q07001	ACHD_HUMAN	nicotinic acetylcholine receptor delta	277					muscle contraction|musculoskeletal movement|neuromuscular process|skeletal muscle tissue growth|synaptic transmission	cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	nicotinic acetylcholine-activated cation-selective channel activity|receptor activity			ovary(1)|breast(1)|skin(1)	3		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;1.89e-16)|BRCA - Breast invasive adenocarcinoma(100;0.00078)|Lung(119;0.00579)|LUSC - Lung squamous cell carcinoma(224;0.00754)		GTGGTGAGAAGACATCAGTGG	0.617													13	36					0	0	0.00244969	0	0
COL6A3	1293	broad.mit.edu	37	2	238274599	238274599	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr2:238274599G>A	uc002vwl.2	-	12	5865	c.5580C>T	c.(5578-5580)TCC>TCT	p.S1860S	COL6A3_uc002vwo.2_Silent_p.S1654S|COL6A3_uc010znj.1_Silent_p.S1253S	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	1860	VWFA 10.|Nonhelical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		CGTCCACCTTGGACTCGAAGC	0.552													54	91					0	0	0.000781405	0	0
RNPEPL1	57140	broad.mit.edu	37	2	241514990	241514990	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr2:241514990C>T	uc002vzi.2	+	8	1373	c.780C>T	c.(778-780)TTC>TTT	p.F260F	RNPEPL1_uc010fzf.2_Silent_p.F166F|RNPEPL1_uc002vzj.2_5'UTR	NM_018226	NP_060696	Q9HAU8	RNPL1_HUMAN	arginyl aminopeptidase (aminopeptidase B)-like	260					leukotriene biosynthetic process|proteolysis		aminopeptidase activity|metallopeptidase activity|zinc ion binding			large_intestine(1)|skin(1)	2		all_epithelial(40;1.13e-11)|Breast(86;0.000169)|Renal(207;0.00571)|Ovarian(221;0.104)|all_hematologic(139;0.182)|all_lung(227;0.204)|Melanoma(123;0.238)		Epithelial(32;3.05e-31)|all cancers(36;8.2e-29)|OV - Ovarian serous cystadenocarcinoma(60;8.55e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;5.12e-06)|Lung(119;0.00168)|Colorectal(34;0.005)|LUSC - Lung squamous cell carcinoma(224;0.00813)|COAD - Colon adenocarcinoma(134;0.0322)		TGAGCTTCTTCCCGGAGCTGA	0.652													22	50					0	0	0.00278032	0	0
ANGPT4	51378	broad.mit.edu	37	20	860423	860423	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr20:860423C>T	uc002wei.2	-	6	1123	c.1020G>A	c.(1018-1020)GTG>GTA	p.V340V	ANGPT4_uc010zpn.1_Silent_p.V334V	NM_015985	NP_057069	Q9Y264	ANGP4_HUMAN	angiopoietin 4 precursor	340	Fibrinogen C-terminal.				anti-apoptosis|blood coagulation|cellular response to hypoxia|leukocyte migration|negative regulation of angiogenesis|negative regulation of blood vessel endothelial cell migration|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of peptidyl-tyrosine phosphorylation|signal transduction	extracellular space	receptor tyrosine kinase binding|transmembrane receptor protein tyrosine kinase activator activity			ovary(2)	2						GCTGAAAATTCACGGTGCCAT	0.612													24	53					0	0	0.000878237	0	0
SIRPB1	10326	broad.mit.edu	37	20	1559237	1559237	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr20:1559237G>A	uc010gai.2	-	2	279	c.180C>T	c.(178-180)ATC>ATT	p.I60I	SIRPB1_uc002wfk.3_Silent_p.I60I	NM_006065	NP_006056	O00241	SIRB1_HUMAN	signal-regulatory protein beta 1 isoform 1	60	Extracellular (Potential).|Ig-like V-type.				cell junction assembly|cell surface receptor linked signaling pathway	integral to plasma membrane	protein binding			ovary(1)	1						GCCCCACAGGGATCAGGGACG	0.542													18	84					0	0	0.00152264	0	0
FASTKD5	60493	broad.mit.edu	37	20	3128872	3128872	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr20:3128872A>G	uc002whz.2	-	2	1156	c.845T>C	c.(844-846)GTT>GCT	p.V282A	uc002whv.1_Intron|UBOX5_uc002whw.2_Intron|UBOX5_uc002whx.2_Intron|UBOX5_uc002why.1_Intron	NM_021826	NP_068598	Q7L8L6	FAKD5_HUMAN	FAST kinase domains 5	282					apoptosis|cellular respiration	mitochondrion	ATP binding|protein kinase activity				0						AATTAAGTGAACTAGCTGAGA	0.343													15	83					0	0	0.000566183	0	0
PLCB4	5332	broad.mit.edu	37	20	9424641	9424641	+	Silent	SNP	C	T	T	rs144853204		TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr20:9424641C>T	uc002wnf.2	+	29	2878	c.2742C>T	c.(2740-2742)ATC>ATT	p.I914I	PLCB4_uc010gbw.1_Silent_p.I914I|PLCB4_uc010gbx.2_Silent_p.I926I|PLCB4_uc002wne.2_Silent_p.I914I|PLCB4_uc002wnh.2_Silent_p.I761I	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	914					intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						TTGAACTTATCCCTCAAGTAA	0.303													6	46					0	0	0.00198382	0	0
ANKRD5	63926	broad.mit.edu	37	20	10030294	10030294	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr20:10030294C>T	uc002wno.2	+	7	1470	c.1077C>T	c.(1075-1077)TTC>TTT	p.F359F	uc002wnn.1_Intron|ANKRD5_uc002wnp.2_Silent_p.F359F|ANKRD5_uc010gbz.2_Silent_p.F170F	NM_022096	NP_071379	Q9NU02	ANKR5_HUMAN	ankyrin repeat domain protein 5	359	EF-hand.						calcium ion binding			ovary(1)|breast(1)	2						AGAACGACTTCGTGATGGTGT	0.527													5	28					0	0	0.000602214	0	0
CST11	140880	broad.mit.edu	37	20	23432469	23432469	+	Missense_Mutation	SNP	T	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr20:23432469T>A	uc002wtf.1	-	2	351	c.317A>T	c.(316-318)GAA>GTA	p.E106V	CST11_uc002wtg.1_Intron	NM_130794	NP_570612	Q9H112	CST11_HUMAN	cystatin 11 isoform 1 precursor	106					defense response to bacterium	cytoplasm|nucleus	cysteine-type endopeptidase inhibitor activity				0	Colorectal(13;0.0431)|Lung NSC(19;0.235)					AAGCTCCCTTTCCTGGGGGAC	0.488													16	64					0	0	0.000958276	0	0
FRG1B	284802	broad.mit.edu	37	20	29628251	29628251	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr20:29628251A>G	uc010ztl.1	+	3	195	c.163A>G	c.(163-165)AAT>GAT	p.N55D	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Missense_Mutation_p.N7D					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						GTTGGCCTCAAATAGCTGCTT	0.358													3	66					0	0	0.000602214	0	0
HCK	3055	broad.mit.edu	37	20	30672294	30672294	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr20:30672294C>T	uc002wxh.2	+	8	954	c.783C>T	c.(781-783)TCC>TCT	p.S261S	HCK_uc010gdy.2_Silent_p.S240S|HCK_uc002wxi.2_Silent_p.S239S	NM_002110	NP_002101	P08631	HCK_HUMAN	hemopoietic cell kinase isoform p61HCK	261					interspecies interaction between organisms|mesoderm development|regulation of defense response to virus by virus|viral reproduction	caveola|cytosol	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(4)|ovary(2)|central_nervous_system(2)|pancreas(1)	9			UCEC - Uterine corpus endometrioid carcinoma (5;0.0241)			CTCGGGAATCCCTCAAGCTGG	0.607													10	47					0	0	0.00136819	0	0
BPIL3	128859	broad.mit.edu	37	20	31623453	31623453	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr20:31623453G>A	uc010zuc.1	+	6	552	c.552G>A	c.(550-552)GTG>GTA	p.V184V	BPIL3_uc010zud.1_Silent_p.V123V	NM_174897	NP_777557	Q8NFQ5	BPIL3_HUMAN	bactericidal/permeability-increasing	184						extracellular region	lipid binding			ovary(1)|pancreas(1)	2						TGGTGTATGTGAACAGGAAGT	0.552													27	52					0	0	0.00058488	0	0
GSS	2937	broad.mit.edu	37	20	33539607	33539607	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr20:33539607C>T	uc002xbg.2	-	2	129	c.49G>A	c.(49-51)GAG>AAG	p.E17K	GSS_uc010zuo.1_Missense_Mutation_p.E17K|GSS_uc010zup.1_5'UTR|GSS_uc002xbh.2_RNA|GSS_uc010gez.1_5'UTR	NM_000178	NP_000169	P48637	GSHB_HUMAN	glutathione synthetase	17					nervous system development|response to oxidative stress|xenobiotic metabolic process	cytosol	ATP binding|glutathione binding|glutathione synthase activity|magnesium ion binding|protein homodimerization activity			ovary(3)	3			BRCA - Breast invasive adenocarcinoma(18;0.035)		Glutathione(DB00143)|Glycine(DB00145)|L-Cysteine(DB00151)	CGTGCCAGCTCCTCTAGCTGC	0.597													10	33					0	0	0.00136819	0	0
SAMHD1	25939	broad.mit.edu	37	20	35545197	35545197	+	Silent	SNP	A	G	G			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr20:35545197A>G	uc002xgh.1	-	9	1120	c.990T>C	c.(988-990)GAT>GAC	p.D330D		NM_015474	NP_056289	Q9Y3Z3	SAMH1_HUMAN	SAM domain- and HD domain-containing protein 1	330					defense response to virus|innate immune response|regulation of innate immune response	nucleus	metal ion binding|phosphoric diester hydrolase activity				0		Myeloproliferative disorder(115;0.00878)				AGCGCTTGTAATCAAAATTAT	0.383													111	158					0	0	0.000781405	0	0
CTNNBL1	56259	broad.mit.edu	37	20	36375000	36375000	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr20:36375000G>A	uc010zvw.1	+	4	548	c.457G>A	c.(457-459)GAT>AAT	p.D153N	CTNNBL1_uc002xhh.2_5'UTR|CTNNBL1_uc010zvv.1_Missense_Mutation_p.D126N	NM_030877	NP_110517	Q8WYA6	CTBL1_HUMAN	beta catenin-like 1	153					apoptosis|positive regulation of apoptosis|somatic diversification of immunoglobulins	nucleus	enzyme binding			ovary(2)	2		Myeloproliferative disorder(115;0.00878)				GCTCGGACACGATAATACAGA	0.507													18	28					0	0	0.00121646	0	0
DHX35	60625	broad.mit.edu	37	20	37634887	37634887	+	Silent	SNP	C	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr20:37634887C>A	uc002xjh.2	+	12	1121	c.1110C>A	c.(1108-1110)CCC>CCA	p.P370P	DHX35_uc010zwa.1_Silent_p.P215P|DHX35_uc010zwb.1_Silent_p.P215P|DHX35_uc010zwc.1_Silent_p.P339P	NM_021931	NP_068750	Q9H5Z1	DHX35_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 35	370	Helicase C-terminal.					catalytic step 2 spliceosome	ATP binding|ATP-dependent helicase activity|nucleic acid binding			lung(1)|kidney(1)|skin(1)	3		Myeloproliferative disorder(115;0.00878)				CCTACAATCCCAGGACAGCTA	0.517													9	268					0.000274275	0.00127933	0.000274275	1	0
PTPRT	11122	broad.mit.edu	37	20	40738973	40738973	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr20:40738973C>T	uc002xkg.2	-	23	3438	c.3254G>A	c.(3253-3255)AGT>AAT	p.S1085N	PTPRT_uc010ggj.2_Missense_Mutation_p.S1104N|PTPRT_uc010ggi.2_Missense_Mutation_p.S288N	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	1085	Tyrosine-protein phosphatase 1.|Cytoplasmic (Potential).|Substrate binding (By similarity).				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				TTTGACTTACCTGCAGTGGAC	0.358													5	23					0	0	0.000602214	0	0
PTPRT	11122	broad.mit.edu	37	20	40790158	40790158	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr20:40790158G>A	uc002xkg.2	-	17	2700	c.2516C>T	c.(2515-2517)TCC>TTC	p.S839F	PTPRT_uc010ggj.2_Missense_Mutation_p.S858F|PTPRT_uc010ggi.2_Missense_Mutation_p.S42F	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	839	Cytoplasmic (Potential).				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				GGTGGGCTGGGAAAGCTCCCC	0.597													16	50					0	0	0.00152264	0	0
HNF4A	3172	broad.mit.edu	37	20	43042392	43042392	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr20:43042392C>T	uc002xma.2	+	4	533	c.444C>T	c.(442-444)AGC>AGT	p.S148S	HNF4A_uc002xlt.2_Silent_p.S126S|HNF4A_uc002xlu.2_Silent_p.S126S|HNF4A_uc002xlv.2_Silent_p.S126S|HNF4A_uc002xly.2_Silent_p.S148S|HNF4A_uc002xlz.2_Silent_p.S148S|HNF4A_uc010ggq.2_Silent_p.S141S	NM_000457	NP_000448	P41235	HNF4A_HUMAN	hepatocyte nuclear factor 4 alpha isoform b	148					blood coagulation|endocrine pancreas development|glucose homeostasis|negative regulation of cell growth|negative regulation of cell proliferation|ornithine metabolic process|phospholipid homeostasis|positive regulation of cholesterol homeostasis|regulation of growth hormone receptor signaling pathway|regulation of insulin secretion|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to glucose stimulus|triglyceride homeostasis|xenobiotic metabolic process	cytoplasm	activating transcription factor binding|protein homodimerization activity|receptor binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|steroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(1)|lung(1)|skin(1)	3		Myeloproliferative disorder(115;0.0122)	COAD - Colon adenocarcinoma(18;0.00189)			AGGACAGCAGCCTGCCCTCCA	0.627													26	140					0	0	0.001512	0	0
HNF4A	3172	broad.mit.edu	37	20	43052831	43052831	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr20:43052831C>T	uc002xma.2	+	8	1155	c.1066C>T	c.(1066-1068)CAG>TAG	p.Q356*	HNF4A_uc002xlt.2_Nonsense_Mutation_p.Q334*|HNF4A_uc002xlu.2_Nonsense_Mutation_p.Q334*|HNF4A_uc002xlv.2_Nonsense_Mutation_p.Q334*|HNF4A_uc002xly.2_Nonsense_Mutation_p.Q356*|HNF4A_uc002xlz.2_Nonsense_Mutation_p.Q356*|HNF4A_uc010ggq.2_Nonsense_Mutation_p.Q349*	NM_000457	NP_000448	P41235	HNF4A_HUMAN	hepatocyte nuclear factor 4 alpha isoform b	356					blood coagulation|endocrine pancreas development|glucose homeostasis|negative regulation of cell growth|negative regulation of cell proliferation|ornithine metabolic process|phospholipid homeostasis|positive regulation of cholesterol homeostasis|regulation of growth hormone receptor signaling pathway|regulation of insulin secretion|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to glucose stimulus|triglyceride homeostasis|xenobiotic metabolic process	cytoplasm	activating transcription factor binding|protein homodimerization activity|receptor binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|steroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(1)|lung(1)|skin(1)	3		Myeloproliferative disorder(115;0.0122)	COAD - Colon adenocarcinoma(18;0.00189)			CGAGCAGATCCAGTTCATCAA	0.527													40	179					0	0	0.000781405	0	0
PARD6B	84612	broad.mit.edu	37	20	49366992	49366992	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr20:49366992C>T	uc002xvo.2	+	3	1329	c.1086C>T	c.(1084-1086)CTC>CTT	p.L362L		NM_032521	NP_115910	Q9BYG5	PAR6B_HUMAN	PAR-6 beta	362					axonogenesis|cell cycle|cell division|establishment or maintenance of cell polarity|protein complex assembly|regulation of cell migration|tight junction assembly	cytosol|tight junction	protein binding			kidney(1)	1						ATCAAAAACTCTTAGAAGAAG	0.398													14	20					0	0	0.000308642	0	0
TSHZ2	128553	broad.mit.edu	37	20	51872850	51872850	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr20:51872850C>T	uc002xwo.2	+	2	3809	c.2853C>T	c.(2851-2853)TTC>TTT	p.F951F		NM_173485	NP_775756	Q9NRE2	TSH2_HUMAN	teashirt zinc finger homeobox 2	951					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|haematopoietic_and_lymphoid_tissue(1)	6			STAD - Stomach adenocarcinoma(23;0.1)			ACCTGGGTTTCCAAATGAAGG	0.507													25	41					0	0	0.000878237	0	0
MC3R	4159	broad.mit.edu	37	20	54824080	54824080	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr20:54824080C>T	uc002xxb.2	+	1	293	c.181C>T	c.(181-183)CTG>TTG	p.L61L		NM_019888	NP_063941	P41968	MC3R_HUMAN	melanocortin 3 receptor	98	Helical; Name=1; (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|positive regulation of cAMP biosynthetic process	integral to plasma membrane	melanocyte-stimulating hormone receptor activity|neuropeptide binding|protein binding			ovary(2)|breast(2)	4			Colorectal(105;0.202)			CCTGGTTATCCTGGCCGTGGT	0.572													25	51					0	0	0.00047179	0	0
ZNF831	128611	broad.mit.edu	37	20	57767265	57767265	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr20:57767265G>A	uc002yan.2	+	1	1191	c.1191G>A	c.(1189-1191)CTG>CTA	p.L397L		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	397	Potential.					intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					AAGCCGGCCTGGAGCTGGAGA	0.502													4	8					0	0	0.00024832	0	0
ZNF831	128611	broad.mit.edu	37	20	57769665	57769665	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr20:57769665G>A	uc002yan.2	+	1	3591	c.3591G>A	c.(3589-3591)GAG>GAA	p.E1197E		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	1197						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					TGCCCGCGGAGCAGAAGGCAA	0.632													14	14					0	0	0.000566183	0	0
SYCP2	10388	broad.mit.edu	37	20	58490535	58490535	+	Missense_Mutation	SNP	T	G	G			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr20:58490535T>G	uc002yaz.2	-	8	723	c.584A>C	c.(583-585)GAA>GCA	p.E195A	SYCP2_uc010gju.1_Missense_Mutation_p.E96A	NM_014258	NP_055073	Q9BX26	SYCP2_HUMAN	synaptonemal complex protein 2	195					cell division|meiotic prophase I|synaptonemal complex assembly		DNA binding			ovary(3)|lung(2)	5	all_lung(29;0.00344)		BRCA - Breast invasive adenocarcinoma(7;1.19e-09)			AATTAACATTTCTTGGTTAGA	0.269													20	70					0	0	0.00278032	0	0
COL9A3	1299	broad.mit.edu	37	20	61471990	61471991	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr20:61471990_61471991GG>AA	uc002ydm.2	+	32	1964_1965	c.1961_1962GG>AA	c.(1960-1962)GGG>GAA	p.G654E	COL9A3_uc002ydn.2_Missense_Mutation_p.G148E	NM_001853	NP_001844	Q14050	CO9A3_HUMAN	alpha 3 type IX collagen precursor	654	Triple-helical region 1 (COL1).				axon guidance	collagen type IX					0	Breast(26;5.68e-08)					GGTGCCATTGGGGCCCAGGGGA	0.653													9	11					0	0	6.4e-05	0	0
PRIC285	85441	broad.mit.edu	37	20	62203460	62203460	+	Splice_Site	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr20:62203460C>T	uc002yfm.2	-	2	1170	c.278_splice	c.e2+1	p.K93_splice	PRIC285_uc002yfn.2_Splice_Site_p.K93_splice	NM_001037335	NP_001032412	Q9BYK8	PR285_HUMAN	PPAR-alpha interacting complex protein 285						cellular lipid metabolic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	ATP binding|DNA binding|helicase activity|ribonuclease activity|RNA binding|transcription coactivator activity|zinc ion binding			central_nervous_system(2)	2	all_cancers(38;2.51e-11)|all_epithelial(29;8.27e-13)		Epithelial(9;1.27e-08)|all cancers(9;7.32e-08)|BRCA - Breast invasive adenocarcinoma(10;5.15e-06)			AGTATCCTTACTTTGGGCAGA	0.637													11	14					0	0	0.00136819	0	0
TPTE	7179	broad.mit.edu	37	21	11012923	11012923	+	RNA	SNP	T	C	C			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr21:11012923T>C	uc002yis.1	-	9		c.1698A>G						P56180	TPTE_HUMAN	Homo sapiens putative tyrosine phosphatase mRNA, complete cds.						signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		TTACCTAGCTTTTTTACTTTT	0.289													6	18					0	0	0.00198382	0	0
CHODL	140578	broad.mit.edu	37	21	19628953	19628953	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr21:19628953C>T	uc002ykv.2	+	2	598	c.207C>T	c.(205-207)CTC>CTT	p.L69L	CHODL_uc002ykr.2_Silent_p.L28L|CHODL_uc002yks.2_Silent_p.L28L|CHODL_uc002ykt.2_Silent_p.L28L|CHODL_uc002yku.2_Silent_p.L28L	NM_024944	NP_079220	Q9H9P2	CHODL_HUMAN	chondrolectin precursor	69	Extracellular (Potential).|C-type lectin.				muscle organ development	integral to membrane|perinuclear region of cytoplasm	sugar binding			upper_aerodigestive_tract(1)	1		all_epithelial(11;0.21)		Epithelial(23;0.000191)|all cancers(11;0.000827)|LUSC - Lung squamous cell carcinoma(23;0.00646)|Lung(58;0.0129)|OV - Ovarian serous cystadenocarcinoma(11;0.017)|COAD - Colon adenocarcinoma(22;0.03)|Colorectal(24;0.0917)		GAGTCCTCCTCAGCCTTGAGA	0.507													9	18					0	0	0.000442599	0	0
C2CD2	25966	broad.mit.edu	37	21	43327113	43327113	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr21:43327113G>A	uc002yzw.2	-	10	1548	c.1306C>T	c.(1306-1308)CCG>TCG	p.P436S	C2CD2_uc002yzt.2_Missense_Mutation_p.P52S|C2CD2_uc002yzu.2_Missense_Mutation_p.P268S|C2CD2_uc002yzv.2_Missense_Mutation_p.P281S|C2CD2_uc002yzx.1_Missense_Mutation_p.P281S	NM_015500	NP_056315	Q9Y426	CU025_HUMAN	C2 calcium-dependent domain containing 2 isoform	436						cytosol|extracellular region|nucleus				ovary(1)	1						GAGCTCAGCGGGGACGCCCTC	0.582													13	41					0	0	0.00185496	0	0
PDE9A	5152	broad.mit.edu	37	21	44152031	44152031	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr21:44152031C>T	uc002zbm.2	+	5	477	c.414C>T	c.(412-414)TGC>TGT	p.C138C	PDE9A_uc002zbn.2_Intron|PDE9A_uc002zbo.2_Intron|PDE9A_uc002zbp.2_5'UTR|PDE9A_uc002zbq.2_Intron|PDE9A_uc002zbs.2_Intron|PDE9A_uc002zbr.2_Intron|PDE9A_uc002zbt.2_Intron|PDE9A_uc002zbu.2_Intron|PDE9A_uc002zbv.2_Intron|PDE9A_uc002zbw.2_Intron|PDE9A_uc002zbx.2_Intron|PDE9A_uc002zby.2_Intron|PDE9A_uc002zbz.2_Intron|PDE9A_uc002zca.2_Silent_p.C97C|PDE9A_uc002zcb.2_Silent_p.C112C|PDE9A_uc002zcc.2_Intron|PDE9A_uc002zcd.2_Intron|PDE9A_uc002zce.2_Silent_p.C71C|PDE9A_uc002zcf.2_5'UTR|PDE9A_uc002zcg.2_Intron|PDE9A_uc002zch.2_5'UTR	NM_002606	NP_002597	O76083	PDE9A_HUMAN	phosphodiesterase 9A isoform a	138					platelet activation|signal transduction	cytosol|endoplasmic reticulum|Golgi apparatus|perinuclear region of cytoplasm|ruffle membrane	3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding|protein binding			ovary(1)|skin(1)	2						CCCAGGGCTGCTACCAGGAAG	0.647													3	23					0	0	0.00024832	0	0
TRPM2	7226	broad.mit.edu	37	21	45845602	45845602	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr21:45845602G>A	uc002zet.1	+	26	3900	c.3687G>A	c.(3685-3687)AAG>AAA	p.K1229K	TRPM2_uc002zeu.1_Silent_p.K1229K|TRPM2_uc002zew.1_Silent_p.K1229K|TRPM2_uc010gpt.1_Silent_p.K1279K|TRPM2_uc002zex.1_Silent_p.K1015K|TRPM2_uc002zey.1_Silent_p.K742K|uc011afe.1_5'Flank|TRPM2_uc011aff.1_5'UTR	NM_003307	NP_003298	O94759	TRPM2_HUMAN	transient receptor potential cation channel,	1229	Cytoplasmic (Potential).					integral to plasma membrane	ADP-ribose diphosphatase activity|calcium channel activity|sodium channel activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3						GAGGCAGGAAGAAGACGGAGG	0.682													3	1					0	0	6.4e-05	0	0
TRPM2	7226	broad.mit.edu	37	21	45855065	45855065	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr21:45855065C>T	uc002zet.1	+	29	4239	c.4026C>T	c.(4024-4026)TTC>TTT	p.F1342F	TRPM2_uc002zeu.1_Silent_p.F1342F|TRPM2_uc002zew.1_Silent_p.F1342F|TRPM2_uc010gpt.1_Silent_p.F1392F|TRPM2_uc002zex.1_Silent_p.F1128F|TRPM2_uc002zey.1_Silent_p.F821F|TRPM2_uc011aff.1_Silent_p.F23F	NM_003307	NP_003298	O94759	TRPM2_HUMAN	transient receptor potential cation channel,	1342	Cytoplasmic (Potential).					integral to plasma membrane	ADP-ribose diphosphatase activity|calcium channel activity|sodium channel activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3						TCAGCTGCTTCGGACCCAACC	0.662													35	49					0	0	0.00111076	0	0
KRTAP10-8	386681	broad.mit.edu	37	21	46032761	46032761	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr21:46032761C>T	uc002zfo.1	+	1	766	c.744C>T	c.(742-744)TTC>TTT	p.F248F	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198695	NP_941968	P60410	KR108_HUMAN	keratin associated protein 10-8	248						keratin filament				large_intestine(1)|breast(1)	2						gcctgtccttcctctgccgcc	0.239													9	28					0	0	0.000442599	0	0
MCM3AP	8888	broad.mit.edu	37	21	47690322	47690322	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr21:47690322A>T	uc002zir.1	-	9	2657	c.2621T>A	c.(2620-2622)TTC>TAC	p.F874Y		NM_003906	NP_003897	O60318	MCM3A_HUMAN	minichromosome maintenance complex component 3	874					DNA replication|protein import into nucleus	cytosol|nucleus	DNA binding|nucleotide binding			large_intestine(2)|lung(1)|ovary(1)|skin(1)	5	Breast(49;0.112)					CACCTGACTGAAGTAACAGTG	0.418													17	97					0	0	0.00278032	0	0
PCNT	5116	broad.mit.edu	37	21	47775381	47775381	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr21:47775381C>T	uc002zji.3	+	12	1883	c.1776C>T	c.(1774-1776)CGC>CGT	p.R592R	PCNT_uc002zjj.2_Silent_p.R474R	NM_006031	NP_006022	O95613	PCNT_HUMAN	pericentrin	592	Glu-rich.				cilium assembly|G2/M transition of mitotic cell cycle	cytosol|microtubule	calmodulin binding			ovary(4)|breast(2)|pancreas(2)	8	Breast(49;0.112)					GCCTGCCACGCTTCCAGGCGG	0.572													38	27					0	0	0.00195071	0	0
PRMT2	3275	broad.mit.edu	37	21	48068404	48068404	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr21:48068404G>T	uc002zjx.2	+	6	676	c.362G>T	c.(361-363)CGA>CTA	p.R121L	PRMT2_uc002zjw.2_Missense_Mutation_p.R121L|PRMT2_uc002zjy.2_Missense_Mutation_p.R121L|PRMT2_uc010gqm.2_Missense_Mutation_p.R121L|PRMT2_uc011aga.1_Missense_Mutation_p.R121L|PRMT2_uc011agb.1_Missense_Mutation_p.R121L|PRMT2_uc011agc.1_Missense_Mutation_p.R121L|PRMT2_uc002zjz.1_Missense_Mutation_p.R7L	NM_206962	NP_996845	P55345	ANM2_HUMAN	HMT1 hnRNP methyltransferase-like 1	121	Interaction with RB1 (By similarity).	S-adenosyl-L-methionine (By similarity).			developmental cell growth|induction of apoptosis|negative regulation of G1/S transition of mitotic cell cycle|negative regulation of NF-kappaB transcription factor activity|negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of androgen receptor signaling pathway	cytosol|nucleus	androgen receptor binding|estrogen receptor binding|histone-arginine N-methyltransferase activity|peroxisome proliferator activated receptor binding|progesterone receptor binding|protein homodimerization activity|retinoic acid receptor binding|signal transducer activity|thyroid hormone receptor binding|transcription coactivator activity			ovary(1)	1	Breast(49;0.247)	Lung NSC(3;0.245)		Epithelial(3;1.03e-07)|OV - Ovarian serous cystadenocarcinoma(3;4.68e-07)|all cancers(3;7.48e-07)|Colorectal(79;0.167)|Lung(125;0.203)|LUSC - Lung squamous cell carcinoma(216;0.23)|READ - Rectum adenocarcinoma(84;0.248)		GACCAGCCACGAACAACTAAA	0.493													25	54					8.24728e-16	3.89962e-15	0.000720815	1	0
POTEH	23784	broad.mit.edu	37	22	16279248	16279248	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr22:16279248C>T	uc010gqp.2	-	4	1027	c.975G>A	c.(973-975)GTG>GTA	p.V325V	POTEH_uc002zlg.1_RNA|POTEH_uc002zlh.1_Silent_p.V44V|POTEH_uc002zlj.1_Silent_p.V160V	NM_001136213	NP_001129685	Q6S545	POTEH_HUMAN	ANKRD26-like family C, member 3	325	ANK 5.									skin(1)	1						TTAAAAATTTCACCACTTGCT	0.328													21	271					0	0	0.00127121	0	0
PPIL2	23759	broad.mit.edu	37	22	22024875	22024875	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr22:22024875C>T	uc010gtj.1	+	3	219	c.103C>T	c.(103-105)CGT>TGT	p.R35C	PPIL2_uc002zvh.3_Missense_Mutation_p.R35C|PPIL2_uc002zvi.3_Missense_Mutation_p.R35C|PPIL2_uc002zvg.3_Missense_Mutation_p.R35C|PPIL2_uc011aij.1_Missense_Mutation_p.R35C	NM_148175	NP_680480	Q13356	PPIL2_HUMAN	peptidylprolyl isomerase-like 2 isoform a	35					blood coagulation|leukocyte migration|protein folding|protein polyubiquitination	Golgi lumen|nucleus|ubiquitin ligase complex	peptidyl-prolyl cis-trans isomerase activity|ubiquitin-ubiquitin ligase activity			ovary(2)	2	Colorectal(54;0.105)					AACAAATTTTCGTCGTTTACC	0.368													74	120					0	0	0.000781405	0	0
LOC96610	96610	broad.mit.edu	37	22	23162191	23162191	+	RNA	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr22:23162191G>A	uc011aim.1	+	283		c.12967G>A								Parts of antibodies, mostly variable regions.												0						ACCATCAGCAGAGCCCAAGCC	0.567													20	27					0	0	0.000958276	0	0
LOC96610	96610	broad.mit.edu	37	22	23237554	23237554	+	RNA	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr22:23237554G>A	uc011aim.1	+	363		c.14957G>A			uc011aiw.1_Splice_Site_p.G109_splice|uc010gtu.1_Splice_Site|uc002zws.2_Intron					Parts of antibodies, mostly variable regions.												0						TGTCCACACAGGTCAGCCCAA	0.577													14	15					0	0	0.00185496	0	0
CABIN1	23523	broad.mit.edu	37	22	24494078	24494078	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr22:24494078C>T	uc002zzi.1	+	26	4167	c.4040C>T	c.(4039-4041)TCC>TTC	p.S1347F	CABIN1_uc002zzj.1_Intron|CABIN1_uc002zzl.1_Missense_Mutation_p.S1347F	NM_012295	NP_036427	Q9Y6J0	CABIN_HUMAN	calcineurin binding protein 1	1347					cell surface receptor linked signaling pathway|chromatin modification	nucleus	protein phosphatase inhibitor activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	5						GGTCTGACATCCCCACCTTAC	0.612													20	93					0	0	0.00047179	0	0
PITPNB	23760	broad.mit.edu	37	22	28307087	28307087	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr22:28307087C>T	uc003adk.2	-	3	138	c.62G>A	c.(61-63)GGG>GAG	p.G21E	PITPNB_uc011akh.1_Missense_Mutation_p.G23E|PITPNB_uc003adl.2_Missense_Mutation_p.G21E	NM_012399	NP_036531	P48739	PIPNB_HUMAN	phosphatidylinositol transfer protein, beta	21					lipid metabolic process|transport	Golgi apparatus	lipid binding			skin(1)	1						GTAAAGCTGCCCAACCTGATA	0.348													18	23					0	0	0.00188189	0	0
SEC14L2	23541	broad.mit.edu	37	22	30806637	30806637	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr22:30806637G>A	uc003ahr.2	+	8	806	c.633G>A	c.(631-633)GAG>GAA	p.E211E	SEC14L2_uc003ahq.2_Silent_p.E211E|SEC14L2_uc011akx.1_Silent_p.E157E|SEC14L2_uc003ahs.2_Silent_p.E137E|SEC14L2_uc011aky.1_Silent_p.E128E|SEC14L2_uc003aht.2_RNA|SEC14L2_uc003ahu.3_Silent_p.E35E|SEC14L2_uc010gvv.2_RNA|SEC14L2_uc010gvw.1_RNA|MTP18_uc010gvx.1_5'UTR|MTP18_uc003ahv.1_Silent_p.E35E|MTP18_uc010gvy.1_Silent_p.E35E	NM_012429	NP_036561	O76054	S14L2_HUMAN	SEC14-like 2 isoform 1	211	CRAL-TRIO.				positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane|nucleus	phospholipid binding|transporter activity|vitamin E binding				0					Vitamin E(DB00163)	TCCTGAGTGAGGACACTCGTA	0.527													23	65					0	0	0.00106085	0	0
BPIL2	254240	broad.mit.edu	37	22	32853344	32853344	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr22:32853344C>G	uc003amn.2	-	1	30	c.30G>C	c.(28-30)TGG>TGC	p.W10C	BPIL2_uc010gwo.2_5'UTR|BPIL2_uc011amb.1_5'UTR|BPIL2_uc003amo.3_Missense_Mutation_p.W10C	NM_174932	NP_777592	Q8NFQ6	BPIL2_HUMAN	bactericidal/permeability-increasing	10						extracellular region	lipopolysaccharide binding|phospholipid binding			ovary(1)|skin(1)	2						GGAAACATCCCCAGAGGACTG	0.408											OREG0003513	type=REGULATORY REGION|Gene=BPIL2|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	4	51					0	0	0.000602214	0	0
TIMP3	7078	broad.mit.edu	37	22	33254006	33254006	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr22:33254006C>T	uc003anb.2	+	4	1505	c.319C>T	c.(319-321)CGC>TGC	p.R107C	SYN3_uc003amx.2_Intron|SYN3_uc003amy.2_Intron|SYN3_uc003amz.2_Intron	NM_000362	NP_000353	P35625	TIMP3_HUMAN	tissue inhibitor of metalloproteinase 3	107	NTR.|Mediates interaction with EFEMP1.				negative regulation of membrane protein ectodomain proteolysis|visual perception		metal ion binding|metalloendopeptidase inhibitor activity|protein binding			lung(1)	1						TCCTGTAGGTCGCGTCTATGA	0.502													19	31					0	0	0.00152264	0	0
APOL3	80833	broad.mit.edu	37	22	36537305	36537305	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr22:36537305C>T	uc003aot.2	-	3	1190	c.1152G>A	c.(1150-1152)GAG>GAA	p.E384E	APOL3_uc003aoq.2_Silent_p.E313E|APOL3_uc003aor.2_Silent_p.E313E|APOL3_uc003aos.2_Silent_p.E313E|APOL3_uc003aou.2_Silent_p.E184E|APOL3_uc003aov.2_Silent_p.E184E	NM_145640	NP_663615	O95236	APOL3_HUMAN	apolipoprotein L3 isoform 1	384					inflammatory response|lipoprotein metabolic process|positive regulation of I-kappaB kinase/NF-kappaB cascade	cytoplasm|extracellular region	lipid binding|lipid transporter activity|signal transducer activity				0						CCATTAGATTCTCCTCCAGCT	0.552													36	71					0	0	0.000692331	0	0
TMPRSS6	164656	broad.mit.edu	37	22	37470731	37470731	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr22:37470731G>A	uc003aqs.1	-	12	1501	c.1387C>T	c.(1387-1389)CTC>TTC	p.L463F	TMPRSS6_uc003aqt.1_Missense_Mutation_p.L454F	NM_153609	NP_705837	Q8IU80	TMPS6_HUMAN	transmembrane protease, serine 6	463	LDL-receptor class A 1.|Extracellular (Potential).				angiogenesis|extracellular matrix organization|fibrinolysis|intracellular signal transduction|proteolysis	integral to membrane|intracellular|plasma membrane	serine-type endopeptidase activity			breast(4)|ovary(1)|skin(1)	6						ACAGAACAGAGGAACTCTCCA	0.622													8	23					0	0	0.000274275	0	0
KCNJ4	3761	broad.mit.edu	37	22	38823376	38823376	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr22:38823376G>A	uc003avs.1	-	2	859	c.762C>T	c.(760-762)TTC>TTT	p.F254F	KCNJ4_uc003avt.1_Silent_p.F254F	NM_004981	NP_004972	P48050	IRK4_HUMAN	potassium inwardly-rectifying channel J4	254	Cytoplasmic (By similarity).				synaptic transmission	basolateral plasma membrane|voltage-gated potassium channel complex	inward rectifier potassium channel activity|PDZ domain binding				0	Melanoma(58;0.0286)					GCGACACCAGGAAGATGCGGT	0.607													5	41					0	0	0.00116845	0	0
TOMM22	56993	broad.mit.edu	37	22	39078936	39078936	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr22:39078936C>T	uc003awe.2	+	3	319	c.289C>T	c.(289-291)CTT>TTT	p.L97F	uc003awd.2_5'Flank	NM_020243	NP_064628	Q9NS69	TOM22_HUMAN	mitochondrial import receptor Tom22	97	TMD; necessary for mitochondrion outer membrane localization and integration in the TOM complex (By similarity).|Helical; (Potential).				protein import into mitochondrial outer membrane	integral to membrane|integral to membrane of membrane fraction|mitochondrial outer membrane translocase complex	protein binding|protein transmembrane transporter activity|receptor activity				0	Melanoma(58;0.04)					GATCCTGGTTCTTCCCGTTGT	0.527													30	126					0	0	0.00178596	0	0
EFCAB6	64800	broad.mit.edu	37	22	43976449	43976449	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr22:43976449C>T	uc003bdy.1	-	25	3338	c.3123G>A	c.(3121-3123)AAG>AAA	p.K1041K	EFCAB6_uc003bdz.1_Silent_p.K889K|EFCAB6_uc010gzi.1_Silent_p.K889K|EFCAB6_uc010gzj.1_Silent_p.K267K	NM_022785	NP_073622	Q5THR3	EFCB6_HUMAN	CAP-binding protein complex interacting protein	1041					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	calcium ion binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	7		Ovarian(80;0.0247)|all_neural(38;0.025)				CTTCTTTTTCCTTGGGCTGAG	0.498													54	268					0	0	0.000781405	0	0
SAMM50	25813	broad.mit.edu	37	22	44371952	44371952	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr22:44371952C>T	uc003bej.2	+	8	863	c.666C>T	c.(664-666)ACC>ACT	p.T222T	SAMM50_uc011aqd.1_Silent_p.T12T|SAMM50_uc003bek.2_Silent_p.T27T	NM_015380	NP_056195	Q9Y512	SAM50_HUMAN	sorting and assembly machinery component 50	222					protein import into mitochondrial outer membrane	integral to membrane|integral to membrane of membrane fraction|mitochondrial sorting and assembly machinery complex	protein binding			skin(1)	1		all_neural(38;0.0966)|Ovarian(80;0.105)|Glioma(61;0.222)				TATGGAAGACCAGCCACACTG	0.463													12	28					0	0	0.000978159	0	0
SAMM50	25813	broad.mit.edu	37	22	44386179	44386179	+	Silent	SNP	T	G	G			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr22:44386179T>G	uc003bej.2	+	14	1454	c.1257T>G	c.(1255-1257)GCT>GCG	p.A419A	SAMM50_uc011aqd.1_Silent_p.A209A|SAMM50_uc003bek.2_Silent_p.A224A	NM_015380	NP_056195	Q9Y512	SAM50_HUMAN	sorting and assembly machinery component 50	419					protein import into mitochondrial outer membrane	integral to membrane|integral to membrane of membrane fraction|mitochondrial sorting and assembly machinery complex	protein binding			skin(1)	1		all_neural(38;0.0966)|Ovarian(80;0.105)|Glioma(61;0.222)				GTAAGCTGGCTGAGTGCATCC	0.572													12	49					0	0	0.00136819	0	0
CELSR1	9620	broad.mit.edu	37	22	46776824	46776824	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr22:46776824G>A	uc003bhw.1	-	22	7117	c.7117C>T	c.(7117-7119)CCG>TCG	p.P2373S	CELSR1_uc011arc.1_Missense_Mutation_p.P694S	NM_014246	NP_055061	Q9NYQ6	CELR1_HUMAN	cadherin EGF LAG seven-pass G-type receptor 1	2373	Extracellular (Potential).				central nervous system development|homophilic cell adhesion|neural tube closure|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein dimerization activity			lung(4)|breast(4)|pancreas(2)|skin(1)	11		Ovarian(80;0.00142)|Breast(42;0.00296)|all_neural(38;0.0416)|Colorectal(5;0.0766)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00643)|BRCA - Breast invasive adenocarcinoma(115;0.171)		CTCACCATCGGGGTATTAATG	0.612													4	20					0	0	0.00024832	0	0
CNTN4	152330	broad.mit.edu	37	3	2908472	2908473	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr3:2908472_2908473CC>TT	uc003bpc.2	+	7	712_713	c.491_492CC>TT	c.(490-492)TCC>TTT	p.S164F	CNTN4_uc003bpb.1_5'UTR|CNTN4_uc003bpd.1_Missense_Mutation_p.S164F	NM_175607	NP_783200	Q8IWV2	CNTN4_HUMAN	contactin 4 isoform a precursor	164	Ig-like C2-type 2.				axon guidance|axonal fasciculation|brain development|negative regulation of neuron differentiation|neuron cell-cell adhesion|regulation of synaptic plasticity	anchored to membrane|axon|extracellular region|plasma membrane	protein binding			large_intestine(2)|ovary(2)|lung(1)|central_nervous_system(1)|pancreas(1)	7		Ovarian(110;0.156)		Epithelial(13;0.000695)|all cancers(10;0.0047)|OV - Ovarian serous cystadenocarcinoma(96;0.01)		GAATACCCTTCCTATCAGGATA	0.381													14	39					0	0	6.4e-05	0	0
ITPR1	3708	broad.mit.edu	37	3	4829647	4829647	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr3:4829647G>A	uc003bqa.2	+	49	6836	c.6488G>A	c.(6487-6489)CGA>CAA	p.R2163Q	ITPR1_uc010hca.1_Missense_Mutation_p.R2148Q|ITPR1_uc011asu.1_Intron|ITPR1_uc003bqc.2_Missense_Mutation_p.R1133Q	NM_001099952	NP_001093422	Q14643	ITPR1_HUMAN	inositol 1,4,5-triphosphate receptor, type 1	2211	Cytoplasmic (Potential).				activation of phospholipase C activity|cell death|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	endoplasmic reticulum membrane|integral to membrane|platelet dense granule membrane|platelet dense tubular network membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|intracellular ligand-gated calcium channel activity|phosphatidylinositol binding|protein binding			lung(7)|breast(5)|ovary(4)|large_intestine(1)|liver(1)|skin(1)|kidney(1)|pancreas(1)	21				Epithelial(13;0.0199)|OV - Ovarian serous cystadenocarcinoma(96;0.0361)|all cancers(10;0.0982)		AGATTAGACCGAACAATGGAA	0.383													6	17					0	0	0.000157383	0	0
GRM7	2917	broad.mit.edu	37	3	7456807	7456807	+	Silent	SNP	G	A	A	rs139183375		TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr3:7456807G>A	uc003bqm.2	+	5	1405	c.1131G>A	c.(1129-1131)ACG>ACA	p.T377T	GRM7_uc011ata.1_RNA|GRM7_uc011atb.1_RNA|GRM7_uc010hcf.2_RNA|GRM7_uc011atc.1_RNA|GRM7_uc010hcg.2_Silent_p.T377T|GRM7_uc003bql.2_Silent_p.T377T|GRM7_uc003bqn.1_5'UTR	NM_000844	NP_000835	Q14831	GRM7_HUMAN	glutamate receptor, metabotropic 7 isoform a	377	Extracellular (Potential).				negative regulation of adenylate cyclase activity|negative regulation of cAMP biosynthetic process|negative regulation of glutamate secretion|sensory perception of smell|sensory perception of sound|synaptic transmission	asymmetric synapse|axon|cell cortex|dendritic shaft|integral to plasma membrane|postsynaptic membrane|presynaptic active zone	adenylate cyclase inhibitor activity|calcium ion binding|glutamate binding|group III metabotropic glutamate receptor activity|PDZ domain binding|serine binding	p.T377M(1)		ovary(4)|lung(3)	7					L-Glutamic Acid(DB00142)	GCAAGTTGACGATTAGTGGGT	0.413													12	17					0	0	0.00136819	0	0
GRM7	2917	broad.mit.edu	37	3	7620408	7620408	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr3:7620408C>T	uc003bqm.2	+	8	2089	c.1815C>T	c.(1813-1815)ACC>ACT	p.T605T	GRM7_uc011ata.1_RNA|GRM7_uc011atb.1_RNA|GRM7_uc010hcf.2_RNA|GRM7_uc011atc.1_RNA|GRM7_uc010hcg.2_Silent_p.T605T|GRM7_uc003bql.2_Silent_p.T605T|GRM7_uc003bqn.1_Silent_p.T188T|GRM7_uc010hch.1_Silent_p.T116T	NM_000844	NP_000835	Q14831	GRM7_HUMAN	glutamate receptor, metabotropic 7 isoform a	605	Helical; Name=1; (Potential).				negative regulation of adenylate cyclase activity|negative regulation of cAMP biosynthetic process|negative regulation of glutamate secretion|sensory perception of smell|sensory perception of sound|synaptic transmission	asymmetric synapse|axon|cell cortex|dendritic shaft|integral to plasma membrane|postsynaptic membrane|presynaptic active zone	adenylate cyclase inhibitor activity|calcium ion binding|glutamate binding|group III metabotropic glutamate receptor activity|PDZ domain binding|serine binding			ovary(4)|lung(3)	7					L-Glutamic Acid(DB00142)	TCATTGCCACCATCTTTGTCA	0.522													15	29					0	0	0.000308642	0	0
TATDN2	9797	broad.mit.edu	37	3	10312420	10312420	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr3:10312420C>T	uc003bvg.2	+	4	2135	c.1554C>T	c.(1552-1554)TTC>TTT	p.F518F	TATDN2_uc003bvf.2_Silent_p.F518F|TATDN2_uc011atr.1_Silent_p.F518F|TATDN2_uc011ats.1_RNA|TATDN2_uc011att.1_RNA	NM_014760	NP_055575	Q93075	TATD2_HUMAN	TatD DNase domain containing 2	518						nucleus	endodeoxyribonuclease activity, producing 5'-phosphomonoesters|metal ion binding			pancreas(2)	2						TTACAAAGTTCAGAAAAATTT	0.498													10	67					0	0	0.000673444	0	0
ATP2B2	491	broad.mit.edu	37	3	10391870	10391870	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr3:10391870C>T	uc003bvt.2	-	16	2769	c.2330G>A	c.(2329-2331)CGA>CAA	p.R777Q	ATP2B2_uc003bvv.2_Missense_Mutation_p.R732Q|ATP2B2_uc003bvw.2_Missense_Mutation_p.R732Q|ATP2B2_uc010hdo.2_Missense_Mutation_p.R482Q	NM_001001331	NP_001001331	Q01814	AT2B2_HUMAN	plasma membrane calcium ATPase 2 isoform 1	777	Cytoplasmic (Potential).				ATP biosynthetic process|cytosolic calcium ion homeostasis|platelet activation	cytosol|integral to membrane|plasma membrane	ATP binding|ATP binding|calcium ion binding|calcium-transporting ATPase activity|calcium-transporting ATPase activity|calmodulin binding|calmodulin binding|metal ion binding|PDZ domain binding|protein C-terminus binding			ovary(3)|skin(2)|central_nervous_system(1)	6						CTTGTCAATTCGCTCCTGCTC	0.488													5	26					0	0	0.000602214	0	0
ATP2B2	491	broad.mit.edu	37	3	10401606	10401606	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr3:10401606G>A	uc003bvt.2	-	13	2300	c.1861C>T	c.(1861-1863)CGC>TGC	p.R621C	ATP2B2_uc003bvv.2_Missense_Mutation_p.R576C|ATP2B2_uc003bvw.2_Missense_Mutation_p.R576C|ATP2B2_uc010hdo.2_Missense_Mutation_p.R326C	NM_001001331	NP_001001331	Q01814	AT2B2_HUMAN	plasma membrane calcium ATPase 2 isoform 1	621	Cytoplasmic (Potential).				ATP biosynthetic process|cytosolic calcium ion homeostasis|platelet activation	cytosol|integral to membrane|plasma membrane	ATP binding|ATP binding|calcium ion binding|calcium-transporting ATPase activity|calcium-transporting ATPase activity|calmodulin binding|calmodulin binding|metal ion binding|PDZ domain binding|protein C-terminus binding			ovary(3)|skin(2)|central_nervous_system(1)	6						CTGTACATGCGGAAGCTCTCG	0.597													30	48					0	0	0.001512	0	0
ATP2B2	491	broad.mit.edu	37	3	10442635	10442635	+	Splice_Site	SNP	A	C	C			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr3:10442635A>C	uc003bvt.2	-	5	1220	c.781_splice	c.e5+1	p.G261_splice	ATP2B2_uc003bvv.2_Splice_Site_p.G261_splice|ATP2B2_uc003bvw.2_Splice_Site_p.G261_splice|ATP2B2_uc010hdp.2_Splice_Site_p.G261_splice|ATP2B2_uc010hdo.2_Splice_Site	NM_001001331	NP_001001331	Q01814	AT2B2_HUMAN	plasma membrane calcium ATPase 2 isoform 1						ATP biosynthetic process|cytosolic calcium ion homeostasis|platelet activation	cytosol|integral to membrane|plasma membrane	ATP binding|ATP binding|calcium ion binding|calcium-transporting ATPase activity|calcium-transporting ATPase activity|calmodulin binding|calmodulin binding|metal ion binding|PDZ domain binding|protein C-terminus binding			ovary(3)|skin(2)|central_nervous_system(1)	6						GCTGAAGCTCACCTGACAGCA	0.557													21	34					0	0	0.00127121	0	0
SLC6A6	6533	broad.mit.edu	37	3	14523300	14523300	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr3:14523300C>T	uc010heg.2	+	21	1964	c.1673C>T	c.(1672-1674)CCC>CTC	p.P558L	SLC6A6_uc003byq.2_Missense_Mutation_p.P558L|SLC6A6_uc003byr.2_RNA	NM_001134367	NP_001127839	P31641	SC6A6_HUMAN	solute carrier family 6 (neurotransmitter	558	Helical; Name=12; (Potential).				cellular amino acid metabolic process	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity|taurine:sodium symporter activity			ovary(1)	1						CTCTGCGTTCCCTTGGTCATC	0.617													9	57					0	0	0.000274275	0	0
OXNAD1	92106	broad.mit.edu	37	3	16312571	16312571	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr3:16312571C>T	uc003caw.2	+	3	569	c.112C>T	c.(112-114)CTA>TTA	p.L38L	OXNAD1_uc010her.1_RNA|OXNAD1_uc003cax.2_Silent_p.L38L|OXNAD1_uc011awb.1_Silent_p.L56L	NM_138381	NP_612390	Q96HP4	OXND1_HUMAN	oxidoreductase NAD-binding domain containing 1	38							oxidoreductase activity			skin(1)	1						CCACCTTACTCTAACCAGGTG	0.478													11	86					0	0	0.000978159	0	0
PLCL2	23228	broad.mit.edu	37	3	17051375	17051375	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr3:17051375G>A	uc011awc.1	+	5	618	c.513G>A	c.(511-513)AAG>AAA	p.K171K	PLCL2_uc010het.1_Silent_p.K53K|PLCL2_uc011awd.1_Silent_p.K53K	NM_001144382	NP_001137854	Q9UPR0	PLCL2_HUMAN	phospholipase C-like 2 isoform 1	179	PH.				intracellular signal transduction|lipid metabolic process	cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(2)|ovary(1)|lung(1)	4						CATCTAAGAAGGATTCTGAGA	0.408													11	28					0	0	0.000978159	0	0
PLCL2	23228	broad.mit.edu	37	3	17051494	17051494	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr3:17051494C>T	uc011awc.1	+	5	737	c.632C>T	c.(631-633)TCC>TTC	p.S211F	PLCL2_uc010het.1_Missense_Mutation_p.S93F|PLCL2_uc011awd.1_Missense_Mutation_p.S93F	NM_001144382	NP_001137854	Q9UPR0	PLCL2_HUMAN	phospholipase C-like 2 isoform 1	219	PH.				intracellular signal transduction|lipid metabolic process	cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(2)|ovary(1)|lung(1)	4						TGTGCGTTTTCCGTCATATAT	0.408													8	64					0	0	0.000274275	0	0
DLEC1	9940	broad.mit.edu	37	3	38126833	38126833	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr3:38126833C>T	uc003cho.1	+	8	1351	c.1330C>T	c.(1330-1332)CCC>TCC	p.P444S	DLEC1_uc003chp.1_Missense_Mutation_p.P444S|DLEC1_uc010hgv.1_Missense_Mutation_p.P444S|DLEC1_uc010hgw.1_Intron|DLEC1_uc003chq.1_Intron	NM_007335	NP_031361	Q9Y238	DLEC1_HUMAN	deleted in lung and esophageal cancer 1 isoform	444					negative regulation of cell proliferation	cytoplasm				ovary(2)|pancreas(2)|central_nervous_system(2)|skin(2)|breast(1)	9				KIRC - Kidney renal clear cell carcinoma(284;0.0664)|Kidney(284;0.0827)		CCAGTTTTTTCCCGACTGCCT	0.537													50	55					0	0	0.000781405	0	0
SLC22A14	9389	broad.mit.edu	37	3	38349157	38349157	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr3:38349157C>T	uc010hhc.1	+	4	763	c.721C>T	c.(721-723)CGC>TGC	p.R241C	SLC22A14_uc003cia.2_3'UTR|SLC22A14_uc003cib.2_Missense_Mutation_p.R241C|SLC22A14_uc011ayo.1_RNA	NM_004803	NP_004794	Q9Y267	S22AE_HUMAN	organic cation transporter like 4	241	Helical; (Potential).					integral to plasma membrane	organic cation transmembrane transporter activity				0				KIRC - Kidney renal clear cell carcinoma(284;0.0554)|Kidney(284;0.0696)		TTTGTTCTTTCGCTTTGGCAT	0.572													62	96					0	0	0.000781405	0	0
SCN10A	6336	broad.mit.edu	37	3	38802219	38802219	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr3:38802219C>T	uc003ciq.2	-	7	903	c.903G>A	c.(901-903)AAG>AAA	p.K301K		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	301	I.				sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	AAGTGCCTCGCTTATTTATGT	0.463													17	30					0	0	0.000566183	0	0
SCN11A	11280	broad.mit.edu	37	3	38926811	38926811	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr3:38926811G>A	uc011ays.1	-	17	3231	c.3032C>T	c.(3031-3033)CCC>CTC	p.P1011L	SCN11A_uc010hhn.1_Missense_Mutation_p.P89L	NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	1011					response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	TTGCTTTTTGGGAACCATCTC	0.423													10	12					0	0	0.000978159	0	0
CSRNP1	64651	broad.mit.edu	37	3	39184702	39184702	+	Silent	SNP	G	A	A	rs34628941	byFrequency	TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr3:39184702G>A	uc003cjg.2	-	5	1828	c.1614C>T	c.(1612-1614)CCC>CCT	p.P538P	CSRNP1_uc003cjh.2_Silent_p.P538P	NM_033027	NP_149016	Q96S65	CSRN1_HUMAN	AXIN1 up-regulated 1	538					apoptosis|positive regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(4)|skin(1)	5						GGCCAGGCAGGGGGAAGTGAG	0.577													26	47					0	0	0.000720815	0	0
KBTBD5	131377	broad.mit.edu	37	3	42727348	42727348	+	Missense_Mutation	SNP	G	A	A	rs144461124	byFrequency	TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr3:42727348G>A	uc003clv.1	+	1	338	c.238G>A	c.(238-240)GAC>AAC	p.D80N		NM_152393	NP_689606	Q2TBA0	KBTB5_HUMAN	kelch repeat and BTB (POZ) domain containing 5	80	BTB.									ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.214)		GGTGTCCCCGGACGTGGTGGC	0.677													6	30					0	0	0.00116845	0	0
SCAP	22937	broad.mit.edu	37	3	47476599	47476599	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr3:47476599C>T	uc003crh.1	-	3	406	c.151G>A	c.(151-153)GGA>AGA	p.G51R	SCAP_uc011baz.1_5'UTR|SCAP_uc003crg.2_5'UTR	NM_012235	NP_036367	Q12770	SCAP_HUMAN	SREBF chaperone protein	51	Lumenal (By similarity).				cholesterol metabolic process|negative regulation of cholesterol biosynthetic process|positive regulation of low-density lipoprotein particle receptor biosynthetic process|positive regulation of transcription via sterol regulatory element binding involved in ER-nuclear sterol response pathway	endoplasmic reticulum membrane|ER to Golgi transport vesicle membrane|Golgi membrane|integral to membrane	unfolded protein binding			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000278)|KIRC - Kidney renal clear cell carcinoma(197;0.00592)|Kidney(197;0.00679)		GGTCCTGTTCCTGGCAAGGGG	0.532													13	40					0	0	0.00244969	0	0
PLXNB1	5364	broad.mit.edu	37	3	48457770	48457770	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr3:48457770G>A	uc003csw.2	-	17	3735	c.3465C>T	c.(3463-3465)CAC>CAT	p.H1155H	PLXNB1_uc003cst.2_5'Flank|PLXNB1_uc003csu.2_Silent_p.H972H|PLXNB1_uc003csx.2_Silent_p.H1155H|PLXNB1_uc010hjx.1_RNA|PLXNB1_uc003csy.1_Translation_Start_Site	NM_002673	NP_002664	O43157	PLXB1_HUMAN	plexin B1 precursor	1155	IPT/TIG 1.|Extracellular (Potential).				axon guidance|cell migration|intracellular signal transduction|regulation of cell shape|regulation of cytoskeleton organization|regulation of small GTPase mediated signal transduction|semaphorin-plexin signaling pathway	extracellular region|integral to plasma membrane|intracellular|semaphorin receptor complex	GTPase activator activity|semaphorin receptor activity|semaphorin receptor binding			ovary(2)|pancreas(1)|breast(1)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		AGGCAAAGTCGTGTTCTGAGA	0.642													19	63					0	0	0.00121646	0	0
UQCRC1	7384	broad.mit.edu	37	3	48638486	48638487	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr3:48638486_48638487CC>TT	uc003cub.1	-	8	932_933	c.887_888GG>AA	c.(886-888)TGG>TAA	p.W296*	UQCRC1_uc003cua.1_Nonsense_Mutation_p.W181*|UQCRC1_uc003cuc.1_Nonsense_Mutation_p.W297*|UQCRC1_uc003cud.1_Nonsense_Mutation_p.W296*	NM_003365	NP_003356	P31930	QCR1_HUMAN	ubiquinol-cytochrome c reductase core protein I	296					aerobic respiration|proteolysis		metalloendopeptidase activity|ubiquinol-cytochrome-c reductase activity|zinc ion binding				0				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00551)|Kidney(197;0.00621)	Atovaquone(DB01117)	CCGGGCTGGCCCAGCCAGGACC	0.584													6	27					0	0	6.4e-05	0	0
CELSR3	1951	broad.mit.edu	37	3	48669416	48669416	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr3:48669416C>T	uc003cuf.1	-	42	10862	c.10862G>A	c.(10861-10863)CGA>CAA	p.R3621Q	SLC26A6_uc003cug.2_Missense_Mutation_p.R195Q|SLC26A6_uc003cuh.2_Missense_Mutation_p.R216Q|SLC26A6_uc010hke.2_Missense_Mutation_p.R67Q|SLC26A6_uc003cuk.2_Intron|SLC26A6_uc003cui.2_Missense_Mutation_p.R216Q|SLC26A6_uc003cuj.2_Missense_Mutation_p.R216Q|SLC26A6_uc011bbp.1_Silent_p.P181P	NM_001407	NP_001398	Q9NYQ7	CELR3_HUMAN	cadherin EGF LAG seven-pass G-type receptor 3	Error:Variant_position_missing_in_Q9NYQ7_after_alignment					homophilic cell adhesion|multicellular organismal development|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(5)|upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)	11				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		GGTATAGCCTCGGACAAGAGG	0.612													14	63					0	0	0.000308642	0	0
WDR6	11180	broad.mit.edu	37	3	49050182	49050182	+	Silent	SNP	C	T	T	rs138381601		TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr3:49050182C>T	uc003cvj.2	+	2	1443	c.1305C>T	c.(1303-1305)TTC>TTT	p.F435F	WDR6_uc011bbx.1_Silent_p.F306F|WDR6_uc011bby.1_Intron|WDR6_uc010hkn.2_Silent_p.F379F|WDR6_uc011bbz.1_Silent_p.F354F	NM_018031	NP_060501	Q9NNW5	WDR6_HUMAN	WD repeat domain 6 protein	405					cell cycle arrest|negative regulation of cell proliferation	cytoplasm				central_nervous_system(1)	1				Kidney(197;9.12e-07)|KIRC - Kidney renal clear cell carcinoma(197;1.32e-05)|BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|OV - Ovarian serous cystadenocarcinoma(275;0.000155)		CCGAGGGCTTCGGATTGTGTG	0.562													10	31					0	0	0.000978159	0	0
LAMB2	3913	broad.mit.edu	37	3	49166499	49166499	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr3:49166499G>A	uc003cwe.2	-	13	1984	c.1685C>T	c.(1684-1686)CCC>CTC	p.P562L	LAMB2_uc003cwf.1_Missense_Mutation_p.P562L	NM_002292	NP_002283	P55268	LAMB2_HUMAN	laminin, beta 2 precursor	562	Laminin IV type B.				cell adhesion	laminin-11 complex|laminin-3 complex	structural molecule activity			ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00219)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		GTCCAGGAAGGGCCGGAAGTA	0.622													13	55					0	0	0.000422831	0	0
CISH	1154	broad.mit.edu	37	3	50645375	50645375	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr3:50645375C>T	uc003dax.2	-	3	621	c.440G>A	c.(439-441)AGG>AAG	p.R147K	CISH_uc010hlq.2_Missense_Mutation_p.R164K	NM_145071	NP_659508	Q9NSE2	CISH_HUMAN	cytokine-inducible SH2-containing protein	147	SH2.				intracellular signal transduction|negative regulation of signal transduction|regulation of cell growth	intracellular					0				BRCA - Breast invasive adenocarcinoma(193;0.000272)|KIRC - Kidney renal clear cell carcinoma(197;0.0171)|Kidney(197;0.0202)		GATGCGTGGCCTGGACAAGCA	0.587													11	46					0	0	0.000978159	0	0
IQCF3	401067	broad.mit.edu	37	3	51864682	51864682	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr3:51864682C>T	uc010hlx.1	+	5	671	c.330C>T	c.(328-330)CGC>CGT	p.R110R	IQCF1_uc003dbq.3_Intron|IQCF3_uc010hlw.1_RNA|IQCF3_uc011bdw.1_RNA	NM_001085479	NP_001078948	P0C7M6	IQCF3_HUMAN	IQ motif containing F3	110	IQ.									ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.000539)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)		AATGTTACCGCCAAATGTGCA	0.567													8	68					0	0	0.000673444	0	0
STAB1	23166	broad.mit.edu	37	3	52553306	52553306	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr3:52553306G>A	uc003dej.2	+	49	5135	c.5061G>A	c.(5059-5061)GCG>GCA	p.A1687A	STAB1_uc003dek.1_5'UTR|STAB1_uc003del.2_5'Flank	NM_015136	NP_055951	Q9NY15	STAB1_HUMAN	stabilin 1 precursor	1687	Extracellular (Potential).|FAS1 5.				cell adhesion|cell-cell signaling|defense response to bacterium|inflammatory response|negative regulation of angiogenesis|receptor-mediated endocytosis	integral to plasma membrane	bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			large_intestine(3)|upper_aerodigestive_tract(2)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	9				BRCA - Breast invasive adenocarcinoma(193;1.73e-05)|Kidney(197;0.00182)|KIRC - Kidney renal clear cell carcinoma(197;0.00205)|OV - Ovarian serous cystadenocarcinoma(275;0.0482)		ATGACTTCGCGCGCGTGGTGA	0.642													50	95					0	0	0.000781405	0	0
C3orf63	23272	broad.mit.edu	37	3	56695032	56695032	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr3:56695032C>T	uc003did.3	-	10	1275	c.1174G>A	c.(1174-1176)GAT>AAT	p.D392N	C3orf63_uc003dic.3_5'UTR|C3orf63_uc003die.3_Missense_Mutation_p.D392N	NM_015224	NP_056039	Q9UK61	CC063_HUMAN	retinoblastoma-associated protein 140 isoform b	392										ovary(3)|kidney(1)|central_nervous_system(1)	5				KIRC - Kidney renal clear cell carcinoma(284;0.0126)|Kidney(284;0.0147)		GTTTCAACATCTAATTTCTCA	0.313													17	35					0	0	0.00074312	0	0
ADAMTS9	56999	broad.mit.edu	37	3	64527078	64527079	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr3:64527078_64527079CC>AA	uc003dmg.2	-	35	5336_5337	c.5304_5305GG>TT	c.(5302-5307)GCGGGG>GCTTGG	p.G1769W	ADAMTS9_uc011bfo.1_Missense_Mutation_p.G1741W|ADAMTS9_uc011bfp.1_Missense_Mutation_p.G680W	NM_182920	NP_891550	Q9P2N4	ATS9_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1769	GON.				glycoprotein catabolic process|multicellular organismal development|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|urinary_tract(1)|skin(1)	4		Lung NSC(201;0.00682)		BRCA - Breast invasive adenocarcinoma(55;0.00142)|Kidney(15;0.00202)|KIRC - Kidney renal clear cell carcinoma(15;0.00221)		GAGTGCATCCCCGCACAGAATA	0.465													12	339					0	0	6.4e-05	0	0
UBA3	9039	broad.mit.edu	37	3	69111006	69111006	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr3:69111006G>A	uc003dno.2	-	11	889	c.869C>T	c.(868-870)TCA>TTA	p.S290L	UBA3_uc003dnq.2_Missense_Mutation_p.S276L|UBA3_uc011bfy.1_Missense_Mutation_p.S113L|UBA3_uc011bfz.1_Missense_Mutation_p.S113L	NM_003968	NP_003959	Q8TBC4	UBA3_HUMAN	ubiquitin-activating enzyme 3 isoform 1	290					protein neddylation|proteolysis	nucleus	acid-amino acid ligase activity|ATP binding|protein heterodimerization activity			ovary(1)	1		Lung NSC(201;0.0193)|Prostate(884;0.174)		BRCA - Breast invasive adenocarcinoma(55;7.98e-05)|Epithelial(33;0.000363)|LUSC - Lung squamous cell carcinoma(21;0.012)|Lung(16;0.0191)|KIRC - Kidney renal clear cell carcinoma(39;0.206)|Kidney(39;0.241)		ATTATATTGTGATGCTCTCTC	0.383													12	89					0	0	0.000422831	0	0
ROBO2	6092	broad.mit.edu	37	3	77599977	77599977	+	Silent	SNP	T	C	C			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr3:77599977T>C	uc003dpy.3	+	8	1711	c.1068T>C	c.(1066-1068)CTT>CTC	p.L356L	ROBO2_uc003dpz.2_Silent_p.L360L|ROBO2_uc011bgj.1_RNA|ROBO2_uc011bgk.1_Silent_p.L360L	NM_002942	NP_002933	Q9HCK4	ROBO2_HUMAN	roundabout, axon guidance receptor, homolog 2	356	Ig-like C2-type 4.|Extracellular (Potential).				apoptosis involved in luteolysis|axon midline choice point recognition|cellular response to hormone stimulus|homophilic cell adhesion|metanephros development|negative regulation of negative chemotaxis|negative regulation of synaptogenesis|olfactory bulb interneuron development|positive regulation of axonogenesis|retinal ganglion cell axon guidance|ureteric bud development	axolemma|cell surface|integral to membrane	axon guidance receptor activity|identical protein binding			lung(5)|skin(3)|ovary(1)|large_intestine(1)|liver(1)	11				Epithelial(33;0.00199)|LUSC - Lung squamous cell carcinoma(21;0.008)|BRCA - Breast invasive adenocarcinoma(55;0.00884)|Lung(72;0.0183)|KIRC - Kidney renal clear cell carcinoma(39;0.0832)|Kidney(39;0.103)		AGAACCTACTTTTCCCAAACC	0.418													3	7					0	0	6.4e-05	0	0
ROBO2	6092	broad.mit.edu	37	3	77607202	77607202	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr3:77607202C>T	uc003dpy.3	+	9	1982	c.1339C>T	c.(1339-1341)CCT>TCT	p.P447S	ROBO2_uc003dpz.2_Missense_Mutation_p.P451S|ROBO2_uc011bgj.1_RNA|ROBO2_uc011bgk.1_Missense_Mutation_p.P451S	NM_002942	NP_002933	Q9HCK4	ROBO2_HUMAN	roundabout, axon guidance receptor, homolog 2	447	Ig-like C2-type 5.|Extracellular (Potential).				apoptosis involved in luteolysis|axon midline choice point recognition|cellular response to hormone stimulus|homophilic cell adhesion|metanephros development|negative regulation of negative chemotaxis|negative regulation of synaptogenesis|olfactory bulb interneuron development|positive regulation of axonogenesis|retinal ganglion cell axon guidance|ureteric bud development	axolemma|cell surface|integral to membrane	axon guidance receptor activity|identical protein binding			lung(5)|skin(3)|ovary(1)|large_intestine(1)|liver(1)	11				Epithelial(33;0.00199)|LUSC - Lung squamous cell carcinoma(21;0.008)|BRCA - Breast invasive adenocarcinoma(55;0.00884)|Lung(72;0.0183)|KIRC - Kidney renal clear cell carcinoma(39;0.0832)|Kidney(39;0.103)		TGATCCTCTTCCTGTAATTAG	0.453													4	16					0	0	0.00024832	0	0
ROBO1	6091	broad.mit.edu	37	3	78656137	78656137	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr3:78656137G>A	uc003dqe.2	-	29	4698	c.4490C>T	c.(4489-4491)TCC>TTC	p.S1497F	ROBO1_uc003dqb.2_Missense_Mutation_p.S1458F|ROBO1_uc003dqc.2_Missense_Mutation_p.S1397F|ROBO1_uc003dqd.2_Missense_Mutation_p.S1452F|ROBO1_uc010hoh.2_Missense_Mutation_p.S689F|ROBO1_uc011bgl.1_Missense_Mutation_p.S1069F	NM_002941	NP_002932	Q9Y6N7	ROBO1_HUMAN	roundabout 1 isoform a	1497	Cytoplasmic (Potential).				activation of caspase activity|axon midline choice point recognition|cell migration involved in sprouting angiogenesis|chemorepulsion involved in postnatal olfactory bulb interneuron migration|homophilic cell adhesion|negative regulation of chemokine-mediated signaling pathway|negative regulation of mammary gland epithelial cell proliferation|negative regulation of negative chemotaxis|positive regulation of axonogenesis|Roundabout signaling pathway	cell surface|cytoplasm|integral to plasma membrane	axon guidance receptor activity|identical protein binding|LRR domain binding			large_intestine(2)	2		Lung SC(41;0.0257)|Lung NSC(201;0.0439)		LUSC - Lung squamous cell carcinoma(21;0.008)|Epithelial(33;0.00999)|Lung(72;0.0177)|BRCA - Breast invasive adenocarcinoma(55;0.0274)		CTGTGTCTTGGATTGGGCAGT	0.438													9	35					0	0	0.000274275	0	0
EPHA3	2042	broad.mit.edu	37	3	89259646	89259646	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr3:89259646G>A	uc003dqy.2	+	3	1015	c.790G>A	c.(790-792)GAA>AAA	p.E264K	EPHA3_uc003dqx.1_Missense_Mutation_p.E264K|EPHA3_uc010hon.1_RNA	NM_005233	NP_005224	P29320	EPHA3_HUMAN	ephrin receptor EphA3 isoform a precursor	264	Extracellular (Potential).|Cys-rich.					extracellular region|integral to plasma membrane	ATP binding			lung(17)|ovary(7)|large_intestine(4)|central_nervous_system(2)|stomach(1)|skin(1)|pancreas(1)	33	all_cancers(8;0.0406)|Melanoma(1;0.00142)|all_epithelial(1;0.0612)	Lung NSC(201;0.0782)		LUSC - Lung squamous cell carcinoma(29;0.00344)|Lung(72;0.00942)		TGCTGGCTATGAAGAAAGAGG	0.403										TSP Lung(6;0.00050)			41	76					0	0	0.000781405	0	0
EPHA6	285220	broad.mit.edu	37	3	97311469	97311469	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr3:97311469C>T	uc010how.1	+	12	2443	c.2400C>T	c.(2398-2400)GCC>GCT	p.A800A	EPHA6_uc011bgo.1_RNA|EPHA6_uc011bgp.1_Silent_p.A166A|EPHA6_uc003drs.3_Silent_p.A192A|EPHA6_uc003drr.3_Silent_p.A192A|EPHA6_uc003drt.2_Silent_p.A192A|EPHA6_uc010hox.1_Intron	NM_001080448	NP_001073917	Q9UF33	EPHA6_HUMAN	EPH receptor A6 isoform a	705	Protein kinase.|Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			stomach(5)|lung(4)|central_nervous_system(3)|breast(1)|skin(1)|ovary(1)|kidney(1)	16						CCTTCCCGGCCATTGGGGTGG	0.458													25	36					0	0	0.000878237	0	0
GPR128	84873	broad.mit.edu	37	3	100354610	100354610	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr3:100354610C>T	uc003duc.2	+	5	805	c.537C>T	c.(535-537)ATC>ATT	p.I179I	GPR128_uc011bhc.1_5'UTR	NM_032787	NP_116176	Q96K78	GP128_HUMAN	G protein-coupled receptor 128 precursor	179	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)|skin(1)	4						CTGAGAACATCACTAGTGCTA	0.343													7	32					0	0	0.000157383	0	0
SENP7	57337	broad.mit.edu	37	3	101136570	101136570	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr3:101136570G>A	uc003dut.2	-	5	460	c.349C>T	c.(349-351)CTA>TTA	p.L117L	SENP7_uc003duu.2_Silent_p.L117L|SENP7_uc003duv.2_Silent_p.L84L|SENP7_uc003duw.2_Intron|SENP7_uc003dux.2_Intron	NM_020654	NP_065705	Q9BQF6	SENP7_HUMAN	sentrin/SUMO-specific protease 7 isoform 1	117					proteolysis	nucleus	cysteine-type peptidase activity			ovary(3)|lung(2)	5						TTTCTAGGTAGGGTCTTTCTG	0.373													15	58					0	0	0.00074312	0	0
CCDC80	151887	broad.mit.edu	37	3	112357148	112357148	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr3:112357148C>T	uc003dzf.2	-	2	1823	c.1605G>A	c.(1603-1605)AAG>AAA	p.K535K	CCDC80_uc011bhv.1_Silent_p.K535K|CCDC80_uc003dzg.2_Silent_p.K535K|CCDC80_uc003dzh.1_Silent_p.K535K	NM_199512	NP_955806	Q76M96	CCD80_HUMAN	steroid-sensitive protein 1 precursor	535	Lys-rich.									ovary(2)	2						TTTTAGACTCCTTTGCTTTTT	0.318													12	39					0	0	0.00185496	0	0
RABL3	285282	broad.mit.edu	37	3	120417420	120417421	+	Splice_Site	DNP	CC	AA	AA			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr3:120417420_120417421CC>AA	uc003edx.2	-	5	414	c.384_splice	c.e5-1	p.G128_splice		NM_173825	NP_776186	Q5HYI8	RABL3_HUMAN	RAB, member of RAS oncogene family-like 3						small GTPase mediated signal transduction		GTP binding				0				GBM - Glioblastoma multiforme(114;0.151)		GATCATAATCCCTGTGATAAAT	0.322													8	245					0	0	6.4e-05	0	0
ILDR1	286676	broad.mit.edu	37	3	121712024	121712024	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr3:121712024C>T	uc003ees.2	-	7	1678	c.1572G>A	c.(1570-1572)AGG>AGA	p.R524R	ILDR1_uc003eeq.2_Silent_p.R492R|ILDR1_uc003eer.2_Silent_p.R480R|ILDR1_uc010hrg.2_Silent_p.R435R	NM_175924	NP_787120	Q86SU0	ILDR1_HUMAN	immunoglobulin-like domain containing receptor	524	Cytoplasmic (Potential).					cytosol|integral to membrane|plasma membrane	receptor activity			skin(1)	1				GBM - Glioblastoma multiforme(114;0.156)		TCCCTTTTTTCCTGCTATTCT	0.647													6	3					0	0	0.00116845	0	0
ILDR1	286676	broad.mit.edu	37	3	121712700	121712700	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr3:121712700G>A	uc003ees.2	-	7	1002	c.896C>T	c.(895-897)GCC>GTC	p.A299V	ILDR1_uc003eeq.2_Missense_Mutation_p.A267V|ILDR1_uc003eer.2_Missense_Mutation_p.A255V|ILDR1_uc010hrg.2_Missense_Mutation_p.A210V	NM_175924	NP_787120	Q86SU0	ILDR1_HUMAN	immunoglobulin-like domain containing receptor	299	Cytoplasmic (Potential).					cytosol|integral to membrane|plasma membrane	receptor activity			skin(1)	1				GBM - Glioblastoma multiforme(114;0.156)		CAGAGGCTGGGCCAGGTTGAG	0.587													11	47					0	0	0.000978159	0	0
CASR	846	broad.mit.edu	37	3	122002713	122002713	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr3:122002713C>T	uc003eev.3	+	7	2284	c.1912C>T	c.(1912-1914)CGC>TGC	p.R638C	CASR_uc003eew.3_Missense_Mutation_p.R648C	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	638	Cytoplasmic (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	TATCAAGTTCCGCAACACACC	0.562													15	21					0	0	0.00244969	0	0
SEC22A	26984	broad.mit.edu	37	3	122942477	122942477	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr3:122942477C>T	uc003ege.2	+	3	333	c.254C>T	c.(253-255)TCT>TTT	p.S85F	SEC22A_uc003egf.2_Missense_Mutation_p.S85F	NM_012430	NP_036562	Q96IW7	SC22A_HUMAN	SEC22 vesicle trafficking protein homolog A	85	Cytoplasmic (Potential).|Longin.				ER to Golgi vesicle-mediated transport|protein transport	endoplasmic reticulum membrane|integral to membrane	transporter activity			ovary(1)	1				GBM - Glioblastoma multiforme(114;0.0548)		CTCGCCTTCTCTTTCCTGGAT	0.373													23	134					0	0	0.000878237	0	0
KALRN	8997	broad.mit.edu	37	3	124376296	124376296	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr3:124376296G>A	uc003ehg.2	+	40	5988	c.5861G>A	c.(5860-5862)GGC>GAC	p.G1954D	KALRN_uc003ehi.2_Missense_Mutation_p.G295D|KALRN_uc003ehk.2_Missense_Mutation_p.G257D|KALRN_uc011bjz.1_Missense_Mutation_p.G46D	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	1953	DH 2.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						CTGCTGCAGGGCTTCATGAAG	0.468													7	24					0	0	0.000274275	0	0
C3orf22	152065	broad.mit.edu	37	3	126270960	126270960	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr3:126270960G>A	uc003ejb.2	-	3	424	c.95C>T	c.(94-96)TCG>TTG	p.S32L		NM_152533	NP_689746	Q8N5N4	CC022_HUMAN	hypothetical protein LOC152065	32											0				GBM - Glioblastoma multiforme(114;0.147)		TGTCAGCCACGACAACCTGCA	0.478													23	31					0	0	0.000586117	0	0
COL29A1	256076	broad.mit.edu	37	3	130095577	130095577	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr3:130095577C>T	uc010htj.1	+	3	1059	c.565C>T	c.(565-567)CTT>TTT	p.L189F	COL29A1_uc010hti.1_RNA	NM_153264	NP_694996	A8TX70	CO6A5_HUMAN	collagen, type XXIX, alpha 1	189	Nonhelical region.|VWFA 1.				axon guidance|cell adhesion	collagen					0						CCATTTCAACCTTCGGACAAT	0.478													3	8					0	0	6.4e-05	0	0
ACPP	55	broad.mit.edu	37	3	132063801	132063801	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr3:132063801G>A	uc010htp.2	+	7	769	c.679G>A	c.(679-681)GCC>ACC	p.A227T	ACPP_uc003eon.3_Missense_Mutation_p.A194T|ACPP_uc003eop.3_Missense_Mutation_p.A227T	NM_001099	NP_001090	P15309	PPAP_HUMAN	acid phosphatase, prostate short isoform	227						extracellular region|lysosomal membrane	5'-nucleotidase activity|acid phosphatase activity			ovary(1)	1						ACCCTCCTGGGCCACTGAGGA	0.408													20	23					0	0	0.00047179	0	0
STAG1	10274	broad.mit.edu	37	3	136087951	136087951	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr3:136087951C>T	uc003era.1	-	24	2836	c.2544G>A	c.(2542-2544)ATG>ATA	p.M848I	STAG1_uc003erb.1_Missense_Mutation_p.M848I|STAG1_uc003erc.1_Missense_Mutation_p.M622I	NM_005862	NP_005853	Q8WVM7	STAG1_HUMAN	stromal antigen 1	848					cell division|chromosome segregation|mitotic metaphase/anaphase transition|mitotic prometaphase	cell junction|chromatin|chromosome, centromeric region|nucleoplasm	protein binding			ovary(2)	2						TACAAGTACCCATGCTCTGGT	0.368													5	11					0	0	0.00198382	0	0
C3orf72	401089	broad.mit.edu	37	3	138668430	138668430	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr3:138668430C>T	uc003esx.1	+	2	300	c.169C>T	c.(169-171)CCC>TCC	p.P57S	FOXL2_uc003esw.2_5'Flank|C3orf72_uc011bmr.1_5'UTR	NM_001040061	NP_001035150	Q6ZUU3	CC072_HUMAN	chromosome 3 open reading frame 72	57											0						AATCGGTCTCCCCAAGATGTG	0.542													11	36					0	0	0.000673444	0	0
CLSTN2	64084	broad.mit.edu	37	3	140185516	140185516	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr3:140185516G>A	uc003etn.2	+	8	1477	c.1287G>A	c.(1285-1287)AAG>AAA	p.K429K	CLSTN2_uc003etm.2_Silent_p.K429K	NM_022131	NP_071414	Q9H4D0	CSTN2_HUMAN	calsyntenin 2 precursor	429	Extracellular (Potential).				homophilic cell adhesion	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|plasma membrane	calcium ion binding			skin(3)|large_intestine(2)|pancreas(1)|central_nervous_system(1)	7						TCTTGCGGAAGGACTTCGACC	0.537										HNSCC(16;0.037)			9	51					0	0	0.000442599	0	0
FAM194A	131831	broad.mit.edu	37	3	150421441	150421441	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr3:150421441G>A	uc003eyg.2	-	1	302	c.245C>T	c.(244-246)ACG>ATG	p.T82M	FAM194A_uc003eyh.2_Intron	NM_152394	NP_689607	Q7L0X2	F194A_HUMAN	hypothetical protein LOC131831	82										skin(2)|ovary(1)	3						ACCGATGTCCGTGACCTTCCA	0.453													23	29					0	0	0.00278032	0	0
IGSF10	285313	broad.mit.edu	37	3	151156353	151156353	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr3:151156353C>T	uc011bod.1	-	6	5996	c.5996G>A	c.(5995-5997)GGA>GAA	p.G1999E	IGSF10_uc011bob.1_Missense_Mutation_p.G26E|IGSF10_uc011boc.1_5'UTR	NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	immunoglobulin superfamily, member 10 precursor	1999	Ig-like C2-type 6.				cell differentiation|multicellular organismal development|ossification	extracellular region				skin(7)|ovary(5)|central_nervous_system(1)	13			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			AAACAGGGATCCATTAGGGTA	0.433													10	27					0	0	0.000442599	0	0
IGSF10	285313	broad.mit.edu	37	3	151165848	151165848	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr3:151165848C>T	uc011bod.1	-	4	1921	c.1921G>A	c.(1921-1923)GGT>AGT	p.G641S		NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	immunoglobulin superfamily, member 10 precursor	641	Ig-like C2-type 2.				cell differentiation|multicellular organismal development|ossification	extracellular region				skin(7)|ovary(5)|central_nervous_system(1)	13			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			CGATAATAACCTTGGTCTTTC	0.423													10	62					0	0	0.000978159	0	0
PLCH1	23007	broad.mit.edu	37	3	155199869	155199869	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr3:155199869C>T	uc011bok.1	-	23	4247	c.3970G>A	c.(3970-3972)GAC>AAC	p.D1324N	PLCH1_uc011boj.1_3'UTR|PLCH1_uc011bol.1_Missense_Mutation_p.D1286N	NM_001130960	NP_001124432	Q4KWH8	PLCH1_HUMAN	phospholipase C eta 1 isoform a	1324					lipid catabolic process|phosphatidylinositol-mediated signaling	membrane	calcium ion binding|calcium-dependent phospholipase C activity|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(3)|ovary(1)	4			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			GTTTCCCAGTCTTCTCCCTTG	0.512													34	46					0	0	0.00283554	0	0
SI	6476	broad.mit.edu	37	3	164737392	164737392	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr3:164737392C>T	uc003fei.2	-	28	3483	c.3421G>A	c.(3421-3423)GGT>AGT	p.G1141S		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	1141	Sucrase.|Lumenal.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	GTACCTACACCAGGGGGTTGG	0.433										HNSCC(35;0.089)			7	10					0	0	0.000157383	0	0
SERPINI1	5274	broad.mit.edu	37	3	167510406	167510406	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr3:167510406G>A	uc003ffa.3	+	4	708	c.510G>A	c.(508-510)AGG>AGA	p.R170R	SERPINI1_uc003ffb.3_Silent_p.R170R	NM_001122752	NP_001116224	Q99574	NEUS_HUMAN	neuroserpin precursor	170					central nervous system development|peripheral nervous system development|regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			skin(1)	1						TATCCCCAAGGGATTTTGATG	0.383													8	23					0	0	0.000442599	0	0
FXR1	8087	broad.mit.edu	37	3	180685857	180685857	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr3:180685857C>T	uc003fkq.2	+	14	1239	c.1217C>T	c.(1216-1218)TCT>TTT	p.S406F	FXR1_uc003fkp.2_Missense_Mutation_p.S321F|FXR1_uc003fkr.2_Missense_Mutation_p.S406F|FXR1_uc011bqj.1_Missense_Mutation_p.S320F|FXR1_uc003fks.2_Missense_Mutation_p.S349F|FXR1_uc011bqk.1_Missense_Mutation_p.S357F|FXR1_uc011bql.1_Missense_Mutation_p.S393F	NM_005087	NP_005078	P51114	FXR1_HUMAN	fragile X mental retardation-related protein 1	406					apoptosis|cell differentiation|muscle organ development	nucleolus|polysome				breast(1)	1	all_cancers(143;6.07e-14)|Ovarian(172;0.0212)		Epithelial(37;3.05e-35)|OV - Ovarian serous cystadenocarcinoma(80;2.4e-22)			TCTGAGCTGTCTAACCCCTCT	0.398													14	59					0	0	0.00074312	0	0
MCF2L2	23101	broad.mit.edu	37	3	182947524	182947524	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr3:182947524G>A	uc003fli.1	-	17	2065	c.1975C>T	c.(1975-1977)CCA>TCA	p.P659S	MCF2L2_uc003flj.1_Missense_Mutation_p.P659S|MCF2L2_uc011bqr.1_RNA	NM_015078	NP_055893	Q86YR7	MF2L2_HUMAN	Rho family guanine-nucleotide exchange factor	659	DH.				regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			ovary(2)|large_intestine(2)|breast(1)	5	all_cancers(143;1.26e-12)|Ovarian(172;0.0355)		all cancers(12;3.35e-44)|Epithelial(37;6.48e-38)|LUSC - Lung squamous cell carcinoma(7;7.12e-25)|Lung(8;6.39e-23)|OV - Ovarian serous cystadenocarcinoma(80;6.75e-21)			AGAACATCTGGAATTAGATGC	0.348													18	94					0	0	0.00152264	0	0
KLHL6	89857	broad.mit.edu	37	3	183209862	183209862	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr3:183209862G>A	uc003flr.2	-	7	1777	c.1719C>T	c.(1717-1719)ATC>ATT	p.I573I	KLHL6_uc003fls.1_RNA|KLHL6_uc003flt.1_3'UTR|KLHL6_uc010hxk.1_RNA	NM_130446	NP_569713	Q8WZ60	KLHL6_HUMAN	kelch-like 6	573	Kelch 6.									haematopoietic_and_lymphoid_tissue(2)|ovary(1)	3	all_cancers(143;9.2e-12)|Ovarian(172;0.0172)		all cancers(12;1.29e-44)|Epithelial(37;1.24e-38)|LUSC - Lung squamous cell carcinoma(7;2.58e-24)|Lung(8;1.79e-22)|OV - Ovarian serous cystadenocarcinoma(80;2.32e-22)			GCACCGTGGCGATAACCTCGT	0.667													23	113					0	0	0.000878237	0	0
ECE2	9718	broad.mit.edu	37	3	184005663	184005663	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr3:184005663G>A	uc003fni.3	+	11	1694	c.1656G>A	c.(1654-1656)ACG>ACA	p.T552T	ECE2_uc011brh.1_Silent_p.T405T|ECE2_uc003fnl.3_Silent_p.T480T|ECE2_uc003fnm.3_Silent_p.T434T|ECE2_uc003fnk.3_Silent_p.T405T|ECE2_uc011bri.1_Silent_p.T467T|ECE2_uc010hxv.2_Silent_p.T196T	NM_014693	NP_055508	O60344	ECE2_HUMAN	endothelin converting enzyme 2 isoform A	552	Lumenal (Potential).|Endothelin-converting enzyme 2 region.				brain development|cardioblast differentiation|cell-cell signaling|peptide hormone processing	cytoplasmic vesicle membrane|Golgi membrane|integral to membrane	metal ion binding|metalloendopeptidase activity|methyltransferase activity			ovary(2)|skin(2)	4	all_cancers(143;1.39e-10)|Ovarian(172;0.0339)		Epithelial(37;8.28e-34)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			TCTCCAACACGGATGACGCCC	0.522													10	68					0	0	0.000978159	0	0
CLCN2	1181	broad.mit.edu	37	3	184073266	184073266	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr3:184073266G>A	uc003foi.2	-	12	1346	c.1222C>T	c.(1222-1224)CGC>TGC	p.R408C	CLCN2_uc003foh.2_5'UTR|CLCN2_uc010hya.1_Missense_Mutation_p.R408C|CLCN2_uc011brl.1_Missense_Mutation_p.R408C|CLCN2_uc011brm.1_Missense_Mutation_p.R364C|CLCN2_uc011brn.1_Missense_Mutation_p.R408C	NM_004366	NP_004357	P51788	CLCN2_HUMAN	chloride channel 2	408						chloride channel complex	voltage-gated chloride channel activity				0	all_cancers(143;6.66e-11)|Ovarian(172;0.0339)		Epithelial(37;2.22e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)		Lubiprostone(DB01046)	AGGCCCTGGCGGACCCACGTC	0.582													9	60					0	0	0.000673444	0	0
TRA2B	6434	broad.mit.edu	37	3	185639812	185639813	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr3:185639812_185639813CC>AA	uc003fpv.2	-	5	900_901	c.624_625GG>TT	c.(622-627)ATGGGG>ATTTGG	p.208_209MG>IW	TRA2B_uc003fpt.2_RNA|TRA2B_uc003fpu.2_RNA|TRA2B_uc010hym.2_Missense_Mutation_p.108_109MG>IW|TRA2B_uc003fpw.2_Missense_Mutation_p.208_209MG>IW	NM_004593	NP_004584	P62995	TRA2B_HUMAN	splicing factor, arginine/serine-rich 10	208_209	Linker.				nuclear mRNA splicing, via spliceosome	nucleus	nucleotide binding|protein binding|RNA binding			ovary(2)	2						GTAGGTCTCCCCATGTAAATTC	0.376													16	578					0	0	6.4e-05	0	0
ATP13A5	344905	broad.mit.edu	37	3	193052888	193052888	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr3:193052888C>T	uc011bsq.1	-	10	944	c.944G>A	c.(943-945)GGA>GAA	p.G315E		NM_198505	NP_940907	Q4VNC0	AT135_HUMAN	ATPase type 13A5	315					ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(5)|skin(4)|large_intestine(2)	11	all_cancers(143;1.08e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;5.56e-18)|LUSC - Lung squamous cell carcinoma(58;6.08e-06)|Lung(62;6.49e-06)	GBM - Glioblastoma multiforme(46;0.000307)		TATACTTTCTCCTAAAGAGGA	0.398													15	26					0	0	0.000422831	0	0
ATP13A5	344905	broad.mit.edu	37	3	193068880	193068880	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr3:193068880G>A	uc011bsq.1	-	7	717	c.717C>T	c.(715-717)GTC>GTT	p.V239V		NM_198505	NP_940907	Q4VNC0	AT135_HUMAN	ATPase type 13A5	239	Helical; (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(5)|skin(4)|large_intestine(2)	11	all_cancers(143;1.08e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;5.56e-18)|LUSC - Lung squamous cell carcinoma(58;6.08e-06)|Lung(62;6.49e-06)	GBM - Glioblastoma multiforme(46;0.000307)		ACACACTTAAGACAATGGAGA	0.403													8	9					0	0	0.000274275	0	0
ZNF595	152687	broad.mit.edu	37	4	59386	59386	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr4:59386C>A	uc003fzv.1	+	2	223	c.67C>A	c.(67-69)CCT>ACT	p.P23T	ZNF595_uc003fzu.1_RNA|ZNF718_uc003fzt.3_Missense_Mutation_p.L23I|ZNF595_uc010iay.1_RNA|ZNF595_uc011bus.1_5'UTR|ZNF595_uc011but.1_Intron	NM_182524	NP_872330	Q7Z3I0	Q7Z3I0_HUMAN	zinc finger protein 595	23					regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding				0		all_cancers(4;0.0738)|all_epithelial(65;0.139)		Lung(54;0.0654)|Epithelial(2;0.0921)|all cancers(2;0.146)|LUSC - Lung squamous cell carcinoma(95;0.173)		ATGTCTGGACCCTGCCCAGCA	0.423													10	438					0.000442599	0.00206272	0.000442599	1	0
LRPAP1	4043	broad.mit.edu	37	4	3519815	3519816	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr4:3519815_3519816GG>AA	uc003ghi.2	-	5	781_782	c.696_697CC>TT	c.(694-699)AACCAG>AATTAG	p.Q233*		NM_002337	NP_002328	P30533	AMRP_HUMAN	low density lipoprotein receptor-related protein	233	Potential.				negative regulation of protein binding|negative regulation of very-low-density lipoprotein particle clearance|protein folding|vesicle-mediated transport	cell surface|integral to membrane|plasma membrane	asialoglycoprotein receptor activity|heparin binding|low-density lipoprotein particle receptor binding|receptor antagonist activity|unfolded protein binding|very-low-density lipoprotein particle receptor binding			ovary(1)|skin(1)	2				UCEC - Uterine corpus endometrioid carcinoma (64;0.165)		TCCAGGCCCTGGTTGATGCTGC	0.658													6	21					0	0	6.4e-05	0	0
OTOP1	133060	broad.mit.edu	37	4	4199131	4199131	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr4:4199131G>A	uc003ghp.1	-	5	1460	c.1430C>T	c.(1429-1431)TCC>TTC	p.S477F		NM_177998	NP_819056	Q7RTM1	OTOP1_HUMAN	otopetrin 1	477					biomineral tissue development	extracellular space|integral to membrane				ovary(2)|central_nervous_system(1)	3				UCEC - Uterine corpus endometrioid carcinoma (64;0.168)		CTTGGGGCAGGAAGAAGCAAG	0.542													34	54					0	0	0.000814825	0	0
SLC2A9	56606	broad.mit.edu	37	4	9892267	9892267	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr4:9892267G>A	uc003gmc.2	-	9	1243	c.1182C>T	c.(1180-1182)TTC>TTT	p.F394F	SLC2A9_uc003gmd.2_Silent_p.F365F	NM_020041	NP_064425	Q9NRM0	GTR9_HUMAN	solute carrier family 2, member 9 protein	394	Helical; Name=9; (Potential).				glucose transport|urate metabolic process	integral to membrane|plasma membrane	sugar:hydrogen symporter activity			ovary(3)	3						GGGTCCCAAAGAAGAGGCCCA	0.527													9	47					0	0	0.000978159	0	0
DCAF16	54876	broad.mit.edu	37	4	17805749	17805749	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr4:17805749G>A	uc003gpn.2	-	3	1077	c.16C>T	c.(16-18)CCC>TCC	p.P6S	DCAF16_uc003gpo.2_RNA	NM_017741	NP_060211	Q9NXF7	DCA16_HUMAN	DDB1 and CUL4 associated factor 16	6						CUL4 RING ubiquitin ligase complex				ovary(1)	1						TCAGGAGAGGGATTTCTAGGA	0.393													11	34					0	0	0.000978159	0	0
SLIT2	9353	broad.mit.edu	37	4	20619119	20619119	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr4:20619119G>A	uc003gpr.1	+	36	4398	c.4194G>A	c.(4192-4194)TTG>TTA	p.L1398L	SLIT2_uc003gps.1_Silent_p.L1390L	NM_004787	NP_004778	O94813	SLIT2_HUMAN	slit homolog 2 precursor	1398					apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding			central_nervous_system(4)|skin(4)|ovary(3)	11						GTAAGTGCTTGGAGGGCCATG	0.532													8	11					0	0	0.000274275	0	0
ATP8A1	10396	broad.mit.edu	37	4	42414996	42414996	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr4:42414996G>A	uc003gwr.2	-	37	3664	c.3432C>T	c.(3430-3432)ATC>ATT	p.I1144I	ATP8A1_uc003gwq.2_Silent_p.I370I|ATP8A1_uc003gws.2_Silent_p.I1129I	NM_006095	NP_006086	Q9Y2Q0	AT8A1_HUMAN	ATPase, aminophospholipid transporter (APLT),	1144	Cytoplasmic (Potential).				ATP biosynthetic process	chromaffin granule membrane|integral to membrane|plasma membrane	aminophospholipid transporter activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|cation-transporting ATPase activity|magnesium ion binding|phospholipid-translocating ATPase activity			skin(2)|central_nervous_system(1)	3					Phosphatidylserine(DB00144)	ACTGTGAAACGATTCCATTTT	0.438													6	20					0	0	0.00198382	0	0
ATP8A1	10396	broad.mit.edu	37	4	42509061	42509061	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr4:42509061C>T	uc003gwr.2	-	23	2290	c.2058G>A	c.(2056-2058)GGG>GGA	p.G686G	ATP8A1_uc003gwq.2_5'UTR|ATP8A1_uc003gws.2_Silent_p.G671G	NM_006095	NP_006086	Q9Y2Q0	AT8A1_HUMAN	ATPase, aminophospholipid transporter (APLT),	686	Cytoplasmic (Potential).				ATP biosynthetic process	chromaffin granule membrane|integral to membrane|plasma membrane	aminophospholipid transporter activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|cation-transporting ATPase activity|magnesium ion binding|phospholipid-translocating ATPase activity			skin(2)|central_nervous_system(1)	3					Phosphatidylserine(DB00144)	CTTGCTTGTCCCCTGTAAGGA	0.373													45	80					0	0	0.000781405	0	0
GABRB1	2560	broad.mit.edu	37	4	47322220	47322220	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr4:47322220G>A	uc003gxh.2	+	5	912	c.538G>A	c.(538-540)GAA>AAA	p.E180K	GABRB1_uc011bze.1_Missense_Mutation_p.E110K	NM_000812	NP_000803	P18505	GBRB1_HUMAN	gamma-aminobutyric acid (GABA) A receptor, beta	180	Extracellular (Probable).				synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)	2					Ethchlorvynol(DB00189)|Flurazepam(DB00690)|Lorazepam(DB00186)|Midazolam(DB00683)	CCTGGAGATCGAAAGTTGTGA	0.423													13	37					0	0	0.00136819	0	0
NFXL1	152518	broad.mit.edu	37	4	47907345	47907345	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr4:47907345A>G	uc010igh.2	-	4	602	c.425T>C	c.(424-426)TTA>TCA	p.L142S	NFXL1_uc003gxp.2_Missense_Mutation_p.L142S|NFXL1_uc003gxq.3_RNA|NFXL1_uc010igi.2_Missense_Mutation_p.L142S	NM_152995	NP_694540	Q6ZNB6	NFXL1_HUMAN	nuclear transcription factor, X-box binding-like	142						integral to membrane|nucleus	sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|lung(1)|skin(1)	3						TGTTCGCTCTAATTCACGTGT	0.343													11	74					0	0	0.000978159	0	0
CWH43	80157	broad.mit.edu	37	4	48990511	48990511	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr4:48990511C>T	uc003gyv.2	+	2	243	c.61C>T	c.(61-63)CTC>TTC	p.L21F	CWH43_uc011bzl.1_5'UTR	NM_025087	NP_079363	Q9H720	PG2IP_HUMAN	cell wall biogenesis 43 C-terminal homolog	21	Helical; (Potential).				GPI anchor biosynthetic process	integral to membrane				skin(2)|ovary(1)	3						TTCTTGGTCTCTCTACCATGA	0.393													21	41					0	0	0.00278032	0	0
REST	5978	broad.mit.edu	37	4	57797783	57797783	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr4:57797783C>T	uc003hch.2	+	4	3106	c.2759C>T	c.(2758-2760)TCA>TTA	p.S920L	REST_uc003hci.2_Missense_Mutation_p.S920L|REST_uc010ihf.2_Missense_Mutation_p.S594L	NM_005612	NP_005603	Q13127	REST_HUMAN	RE1-silencing transcription factor	920					cardiac muscle cell myoblast differentiation|cellular response to drug|cellular response to electrical stimulus|cellular response to glucocorticoid stimulus|histone H4 deacetylation|negative regulation by host of viral transcription|negative regulation of aldosterone biosynthetic process|negative regulation of calcium ion-dependent exocytosis|negative regulation of cell proliferation|negative regulation of cortisol biosynthetic process|negative regulation of dense core granule biogenesis|negative regulation of insulin secretion|negative regulation of mesenchymal stem cell differentiation|negative regulation of neurogenesis|negative regulation of neuron differentiation|positive regulation of apoptosis|positive regulation of caspase activity|positive regulation of transcription, DNA-dependent	cytoplasm|transcriptional repressor complex	calcium channel activity|chromatin binding|core promoter proximal region sequence-specific DNA binding|core promoter sequence-specific DNA binding|outward rectifier potassium channel activity|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription|zinc ion binding			skin(5)|upper_aerodigestive_tract(1)|ovary(1)|lung(1)|central_nervous_system(1)	9	Glioma(25;0.08)|all_neural(26;0.181)					ACCCATATTTCATCCTCTGGA	0.413													14	46					0	0	0.00185496	0	0
UGT2B10	7365	broad.mit.edu	37	4	69693052	69693052	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr4:69693052C>T	uc003hee.2	+	5	1118	c.1093C>T	c.(1093-1095)CCA>TCA	p.P365S	UGT2B10_uc011cam.1_Missense_Mutation_p.P281S	NM_001075	NP_001066	P36537	UDB10_HUMAN	UDP glucuronosyltransferase 2B10 isoform 1	365					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(3)|ovary(2)	5						CCTAGGTCATCCAAAAACCAG	0.383													11	16					0	0	0.00244969	0	0
ENAM	10117	broad.mit.edu	37	4	71507923	71507923	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr4:71507923G>A	uc011caw.1	+	9	1061	c.780G>A	c.(778-780)GGG>GGA	p.G260G		NM_031889	NP_114095	Q9NRM1	ENAM_HUMAN	enamelin precursor	260					bone mineralization|odontogenesis	proteinaceous extracellular matrix	structural constituent of tooth enamel			ovary(3)	3			Lung(101;0.235)			ATCCTAAAGGGAGTCAGGGAG	0.502													27	42					0	0	0.000586117	0	0
PARM1	25849	broad.mit.edu	37	4	75937974	75937974	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr4:75937974G>A	uc003hih.1	+	2	623	c.383G>A	c.(382-384)GGC>GAC	p.G128D		NM_015393	NP_056208	Q6UWI2	PARM1_HUMAN	prostatic androgen-repressed message-1	128	Extracellular (Potential).				positive regulation of telomerase activity	early endosome|endosome membrane|Golgi membrane|integral to membrane|late endosome|plasma membrane				ovary(1)	1						CACAGCTCGGGCACTCCTGAA	0.577													20	83					0	0	0.000958276	0	0
CCDC158	339965	broad.mit.edu	37	4	77288456	77288456	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr4:77288456C>T	uc003hkb.3	-	11	1974	c.1821G>A	c.(1819-1821)AAG>AAA	p.K607K		NM_001042784	NP_001036249	Q5M9N0	CD158_HUMAN	coiled-coil domain containing 158	607	Potential.									skin(3)|ovary(2)|pancreas(1)	6						CCTTAAGTTCCTTTAGTTCCA	0.373													32	56					0	0	0.00128727	0	0
CCDC158	339965	broad.mit.edu	37	4	77288720	77288720	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr4:77288720G>A	uc003hkb.3	-	11	1710	c.1557C>T	c.(1555-1557)ATC>ATT	p.I519I		NM_001042784	NP_001036249	Q5M9N0	CD158_HUMAN	coiled-coil domain containing 158	519	Potential.									skin(3)|ovary(2)|pancreas(1)	6						GGAGCTTTGTGATCTCTGCAT	0.493													26	43					0	0	0.00106085	0	0
C4orf22	255119	broad.mit.edu	37	4	81283940	81283940	+	Silent	SNP	A	G	G			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr4:81283940A>G	uc003hmf.2	+	2	193	c.144A>G	c.(142-144)CTA>CTG	p.L48L	C4orf22_uc010ijp.2_Silent_p.L48L	NM_152770	NP_689983	Q6V702	CD022_HUMAN	hypothetical protein LOC255119	48										skin(2)	2						TGGTGGAGCTAGGCTACCGAG	0.448													38	95					0	0	0.00195071	0	0
HPGDS	27306	broad.mit.edu	37	4	95229885	95229885	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr4:95229885C>T	uc003hte.1	-	4	327	c.236G>A	c.(235-237)GGA>GAA	p.G79E		NM_014485	NP_055300	O60760	HPGDS_HUMAN	prostaglandin D2 synthase, hematopoietic	79	GST N-terminal.				locomotory behavior|prostaglandin biosynthetic process|signal transduction	cytoplasm|nucleus	calcium ion binding|glutathione transferase activity|magnesium ion binding|prostaglandin-D synthase activity|protein homodimerization activity			ovary(1)	1					Glutathione(DB00143)	TTCTGTGTTTCCAGCCAAATC	0.338													22	33					0	0	0.00152264	0	0
ADH1B	125	broad.mit.edu	37	4	100232022	100232022	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr4:100232022C>T	uc003hus.3	-	8	1087	c.1003G>A	c.(1003-1005)GAT>AAT	p.D335N	ADH1A_uc011ceg.1_Intron|ADH1B_uc003hut.3_Missense_Mutation_p.D295N|ADH1B_uc011ceh.1_Missense_Mutation_p.D180N|ADH1B_uc011cei.1_Missense_Mutation_p.D295N	NM_000668	NP_000659	P00325	ADH1B_HUMAN	class I alcohol dehydrogenase, beta subunit	335					ethanol oxidation|xenobiotic metabolic process	cytosol	alcohol dehydrogenase activity, zinc-dependent|zinc ion binding			ovary(1)|breast(1)	2				OV - Ovarian serous cystadenocarcinoma(123;1.02e-07)	Fomepizole(DB01213)|NADH(DB00157)	GCCATAAAATCAGCCACAAGT	0.368													10	64					0	0	0.000978159	0	0
ANK2	287	broad.mit.edu	37	4	114275374	114275374	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr4:114275374C>T	uc003ibe.3	+	38	5700	c.5600C>T	c.(5599-5601)TCA>TTA	p.S1867L	ANK2_uc003ibd.3_Intron|ANK2_uc003ibf.3_Intron|ANK2_uc011cgc.1_Intron|ANK2_uc003ibg.3_Intron|ANK2_uc003ibh.3_Intron|ANK2_uc011cgd.1_5'Flank|ANK2_uc011cgb.1_Missense_Mutation_p.S1882L	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	1834	Repeat A.|Repeat-rich region.				axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		GAAAGACATTCACCTGCGTCA	0.443													21	54					0	0	0.00278032	0	0
UGT8	7368	broad.mit.edu	37	4	115597161	115597161	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr4:115597161T>C	uc003ibs.2	+	6	1865	c.1343T>C	c.(1342-1344)ATA>ACA	p.I448T	UGT8_uc003ibt.2_Missense_Mutation_p.I448T|UGT8_uc011cge.1_RNA	NM_001128174	NP_001121646	Q16880	CGT_HUMAN	UDP-galactose-ceramide galactosyltransferase 8	448					central nervous system development|peripheral nervous system development	integral to membrane	2-hydroxyacylsphingosine 1-beta-galactosyltransferase activity|UDP-galactose:glucosylceramide beta-1,4-galactosyltransferase activity			ovary(1)|skin(1)	2		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000632)		ATCTATTGGATAGATTATATT	0.443													17	91					0	0	0.00152264	0	0
C4orf31	79625	broad.mit.edu	37	4	121957863	121957863	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr4:121957863C>T	uc003idq.1	-	4	1790	c.1263G>A	c.(1261-1263)CTG>CTA	p.L421L		NM_024574	NP_078850	Q8TB73	CD031_HUMAN	hypothetical protein LOC79625 precursor	421											0						TGTTTCCTTTCAGTCGAACGA	0.413													27	27					0	0	0.000878237	0	0
TMEM155	132332	broad.mit.edu	37	4	122682754	122682754	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr4:122682754C>T	uc003idx.1	-	5	710	c.151G>A	c.(151-153)GGA>AGA	p.G51R	TMEM155_uc003idy.1_Missense_Mutation_p.G51R	NM_152399	NP_689612	Q4W5P6	TM155_HUMAN	transmembrane protein 155 precursor	51						extracellular region					0						CTTGCCATTCCCAGAAAAGCC	0.428													16	34					0	0	0.000958276	0	0
ADAD1	132612	broad.mit.edu	37	4	123317444	123317444	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr4:123317444C>T	uc003ieo.2	+	7	868	c.636C>T	c.(634-636)ATC>ATT	p.I212I	ADAD1_uc003iep.2_Silent_p.I212I|ADAD1_uc003ieq.2_Silent_p.I194I	NM_139243	NP_640336	Q96M93	ADAD1_HUMAN	adenosine deaminase domain containing 1	212					multicellular organismal development|RNA processing	nucleus	adenosine deaminase activity|double-stranded RNA binding				0						TTTCACAGATCGTTAAAGAAA	0.308													8	40					0	0	0.000442599	0	0
FAT4	79633	broad.mit.edu	37	4	126328139	126328139	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr4:126328139G>A	uc003ifj.3	+	3	5412	c.5412G>A	c.(5410-5412)AGG>AGA	p.R1804R	FAT4_uc011cgp.1_Silent_p.R102R	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	1804	Cadherin 17.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						GGTTGGACAGGGAACGCCGCT	0.458													15	18					0	0	0.000566183	0	0
FAT4	79633	broad.mit.edu	37	4	126336743	126336743	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr4:126336743G>A	uc003ifj.3	+	5	6625	c.6625G>A	c.(6625-6627)GGT>AGT	p.G2209S	FAT4_uc011cgp.1_Missense_Mutation_p.G507S	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	2209	Cadherin 21.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						CTCTGTCACAGGTGCCATCAC	0.463													9	24					0	0	0.000978159	0	0
FAT4	79633	broad.mit.edu	37	4	126371309	126371309	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr4:126371309C>T	uc003ifj.3	+	9	9138	c.9138C>T	c.(9136-9138)TCC>TCT	p.S3046S	FAT4_uc011cgp.1_Silent_p.S1344S|FAT4_uc003ifi.1_Silent_p.S524S	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	3046	Extracellular (Potential).|Cadherin 29.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						TAGCATCCTCCCTGATTTCTG	0.383													14	21					0	0	0.000308642	0	0
FAT4	79633	broad.mit.edu	37	4	126372516	126372516	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr4:126372516G>A	uc003ifj.3	+	9	10345	c.10345G>A	c.(10345-10347)GAA>AAA	p.E3449K	FAT4_uc011cgp.1_Missense_Mutation_p.E1747K|FAT4_uc003ifi.1_Missense_Mutation_p.E927K	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	3449	Cadherin 33.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						ATCAGGGAATGAAAATGGTGC	0.463													8	58					0	0	0.000157383	0	0
FAT4	79633	broad.mit.edu	37	4	126411861	126411861	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr4:126411861C>T	uc003ifj.3	+	17	13884	c.13884C>T	c.(13882-13884)ATC>ATT	p.I4628I	FAT4_uc011cgp.1_Silent_p.I2869I|FAT4_uc003ifi.1_Silent_p.I2105I	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	4628	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						CCAGCAGCATCGCCCCTTCGG	0.512													12	55					0	0	0.00136819	0	0
SLC7A11	23657	broad.mit.edu	37	4	139100499	139100499	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr4:139100499A>G	uc011chb.1	-	11	1596	c.1316T>C	c.(1315-1317)GTT>GCT	p.V439A		NM_014331	NP_055146	Q9UPY5	XCT_HUMAN	solute carrier family 7, (cationic amino acid	439	Helical; (Potential).				blood coagulation|cellular nitrogen compound metabolic process|leukocyte migration|response to toxin	integral to membrane|plasma membrane	cystine:glutamate antiporter activity|protein binding			skin(1)	1	all_hematologic(180;0.166)				L-Cystine(DB00138)|L-Glutamic Acid(DB00142)|Sulfasalazine(DB00795)	GGAAAGGGCAACCATGAAGAG	0.443													4	9					0	0	0.00024832	0	0
NR3C2	4306	broad.mit.edu	37	4	149075934	149075934	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr4:149075934G>A	uc003ilj.3	-	5	2467	c.2133C>T	c.(2131-2133)ATC>ATT	p.I711I	NR3C2_uc003ilk.3_Intron|NR3C2_uc010iph.2_Intron	NM_000901	NP_000892	P08235	MCR_HUMAN	nuclear receptor subfamily 3, group C, member 2	711	Hinge.				regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	endoplasmic reticulum membrane|nucleoplasm	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|zinc ion binding			large_intestine(1)	1	all_hematologic(180;0.151)			GBM - Glioblastoma multiforme(119;0.0614)	Desoxycorticosterone Pivalate(DB01134)|Eplerenone(DB00700)|Fludrocortisone(DB00687)|Spironolactone(DB00421)	TTGCAGGAGCGATGTACGTTG	0.478													41	56					0	0	0.00222228	0	0
FGG	2266	broad.mit.edu	37	4	155531292	155531292	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr4:155531292C>T	uc003ioj.2	-	5	600	c.459G>A	c.(457-459)AAG>AAA	p.K153K	FGG_uc003iog.2_Silent_p.K153K|FGG_uc003ioh.2_Silent_p.K153K|FGG_uc010ipx.2_Intron|FGG_uc010ipy.2_Intron|FGG_uc003ioi.2_5'UTR|FGG_uc003iok.2_Silent_p.K153K	NM_021870	NP_068656	P02679	FIBG_HUMAN	fibrinogen, gamma chain isoform gamma-B	153					platelet activation|platelet degranulation|protein polymerization|response to calcium ion|signal transduction	external side of plasma membrane|fibrinogen complex|platelet alpha granule lumen	eukaryotic cell surface binding|protein binding, bridging|receptor binding				0	all_hematologic(180;0.215)	Renal(120;0.0458)			Sucralfate(DB00364)	GCTGGGCTACCTTCTCTTTCA	0.348													10	10					0	0	0.000673444	0	0
CCDC111	201973	broad.mit.edu	37	4	185599530	185599530	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr4:185599530C>T	uc003iwk.2	+	8	1422	c.989C>T	c.(988-990)TCT>TTT	p.S330F	CCDC111_uc010isd.1_RNA|CCDC111_uc003iwj.2_Missense_Mutation_p.S330F|CCDC111_uc003iwl.2_Missense_Mutation_p.S330F|CCDC111_uc003iwm.2_Missense_Mutation_p.S201F|CCDC111_uc003iwn.2_Intron	NM_152683	NP_689896	Q96LW4	CC111_HUMAN	coiled-coil domain containing 111	330					DNA replication, synthesis of RNA primer		DNA primase activity			central_nervous_system(1)	1		all_lung(41;9.65e-12)|Lung NSC(41;1.64e-11)|Colorectal(36;0.00531)|Hepatocellular(41;0.00932)|Renal(120;0.0246)|Prostate(90;0.0283)|all_hematologic(60;0.0749)|all_neural(102;0.131)		all cancers(43;5.84e-27)|Epithelial(43;2.2e-23)|OV - Ovarian serous cystadenocarcinoma(60;4.28e-11)|STAD - Stomach adenocarcinoma(60;2.66e-05)|GBM - Glioblastoma multiforme(59;3.03e-05)|Colorectal(24;7.57e-05)|BRCA - Breast invasive adenocarcinoma(30;0.000249)|COAD - Colon adenocarcinoma(29;0.000502)|LUSC - Lung squamous cell carcinoma(40;0.00995)|READ - Rectum adenocarcinoma(43;0.173)		TTTCTCTCTTCTTTGGTCAGC	0.313													21	30					0	0	0.00229938	0	0
F11	2160	broad.mit.edu	37	4	187205274	187205274	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr4:187205274C>T	uc003iza.1	+	11	1497	c.1164C>T	c.(1162-1164)ATC>ATT	p.I388I		NM_000128	NP_000119	P03951	FA11_HUMAN	coagulation factor XI precursor	388	Peptidase S1.				blood coagulation, intrinsic pathway|plasminogen activation|positive regulation of fibrinolysis	extracellular space|plasma membrane	heparin binding|serine-type endopeptidase activity				0		all_cancers(14;6.2e-52)|all_epithelial(14;1.62e-38)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|Colorectal(36;0.0161)|all_neural(102;0.202)		OV - Ovarian serous cystadenocarcinoma(60;2.13e-11)|BRCA - Breast invasive adenocarcinoma(30;4.59e-06)|GBM - Glioblastoma multiforme(59;0.000149)|STAD - Stomach adenocarcinoma(60;0.000314)|LUSC - Lung squamous cell carcinoma(40;0.00112)|READ - Rectum adenocarcinoma(43;0.176)	Coagulation Factor IX(DB00100)	AGCCCAGGATCGTTGGAGGAA	0.517													36	70					0	0	0.00170553	0	0
KIAA0947	23379	broad.mit.edu	37	5	5461977	5461977	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr5:5461977C>T	uc003jdm.3	+	13	2752	c.2530C>T	c.(2530-2532)CCT>TCT	p.P844S		NM_015325	NP_056140	Q9Y2F5	K0947_HUMAN	hypothetical protein LOC23379	844										ovary(1)|central_nervous_system(1)	2						AAATAACAATCCTGTAGAATT	0.403													8	63					0	0	0.000442599	0	0
PAPD7	11044	broad.mit.edu	37	5	6750606	6750606	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr5:6750606G>T	uc003jdx.1	+	10	1229	c.1100G>T	c.(1099-1101)GGG>GTG	p.G367V	PAPD7_uc011cmn.1_Missense_Mutation_p.G358V|PAPD7_uc010itl.1_Missense_Mutation_p.G187V	NM_006999	NP_008930	Q5XG87	PAPD7_HUMAN	DNA polymerase sigma	367	Ser-rich.				cell division|DNA replication|double-strand break repair|mitotic chromosome condensation|response to drug|sister chromatid cohesion	nucleus	DNA binding|DNA-directed DNA polymerase activity|metal ion binding|SMC protein binding			ovary(1)	1						TCACTTTCTGGGAGTGACGTT	0.567													5	54					0.00116845	0.00542261	0.00116845	1	0
CTNND2	1501	broad.mit.edu	37	5	11397202	11397202	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr5:11397202G>A	uc003jfa.1	-	6	698	c.553C>T	c.(553-555)CCT>TCT	p.P185S	CTNND2_uc010itt.2_Missense_Mutation_p.P94S|CTNND2_uc011cmy.1_Intron|CTNND2_uc011cmz.1_5'UTR|CTNND2_uc010itu.1_Intron	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	185					multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						AGCTGTGAAGGGGTGGTTTCC	0.602													14	47					0	0	0.00244969	0	0
DNAH5	1767	broad.mit.edu	37	5	13770895	13770895	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr5:13770895C>T	uc003jfd.2	-	56	9610	c.9568G>A	c.(9568-9570)GGA>AGA	p.G3190R	DNAH5_uc003jfc.2_5'Flank	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3190	Stalk (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TGCTTTTCTCCATATATGAAC	0.383									Kartagener_syndrome				11	26					0	0	0.000978159	0	0
DNAH5	1767	broad.mit.edu	37	5	13829667	13829667	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr5:13829667C>T	uc003jfd.2	-	38	6438	c.6396G>A	c.(6394-6396)AGG>AGA	p.R2132R		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	2132	AAA 1 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TGAAAAACTTCCTGGCCAAAA	0.448									Kartagener_syndrome				9	62					0	0	0.000274275	0	0
PRDM9	56979	broad.mit.edu	37	5	23522894	23522894	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr5:23522894G>A	uc003jgo.2	+	8	964	c.782G>A	c.(781-783)TGG>TAG	p.W261*		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	261	SET.				meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						CTTGGAGTATGGAATGAGGCA	0.582										HNSCC(3;0.000094)			5	28					0	0	0.000602214	0	0
SPEF2	79925	broad.mit.edu	37	5	35700632	35700632	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr5:35700632G>A	uc003jjo.2	+	16	2287	c.2176G>A	c.(2176-2178)GGT>AGT	p.G726S	SPEF2_uc003jjq.3_Missense_Mutation_p.G721S|SPEF2_uc003jjp.1_Missense_Mutation_p.G212S	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	726					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			TATCCTAGATGGTTTTCCAAT	0.363													8	17					0	0	0.000442599	0	0
NIPBL	25836	broad.mit.edu	37	5	37064648	37064648	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr5:37064648G>A	uc003jkl.3	+	47	8568	c.8069G>A	c.(8068-8070)CGA>CAA	p.R2690Q	NIPBL_uc003jkk.3_3'UTR|NIPBL_uc003jkn.2_3'UTR	NM_133433	NP_597677	Q6KC79	NIPBL_HUMAN	delangin isoform A	2690					brain development|cellular protein localization|cellular response to X-ray|cognition|developmental growth|ear morphogenesis|embryonic arm morphogenesis|embryonic digestive tract morphogenesis|external genitalia morphogenesis|eye morphogenesis|face morphogenesis|gall bladder development|maintenance of mitotic sister chromatid cohesion|metanephros development|negative regulation of transcription from RNA polymerase II promoter|outflow tract morphogenesis|positive regulation of histone deacetylation|regulation of developmental growth|regulation of embryonic development|regulation of hair cycle|response to DNA damage stimulus|sensory perception of sound|uterus morphogenesis	SMC loading complex	chromo shadow domain binding|histone deacetylase binding|protein C-terminus binding|protein N-terminus binding			ovary(4)|lung(2)|large_intestine(1)|breast(1)|kidney(1)	9	all_lung(31;0.000447)|Hepatocellular(1;0.108)		Epithelial(62;0.072)|COAD - Colon adenocarcinoma(61;0.14)|all cancers(62;0.191)|Colorectal(62;0.202)			AGGTCAAAACGAAATTCAGAC	0.373													17	83					0	0	0.000566183	0	0
EGFLAM	133584	broad.mit.edu	37	5	38370477	38370477	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr5:38370477G>A	uc003jlc.1	+	6	949	c.625G>A	c.(625-627)GAT>AAT	p.D209N	EGFLAM_uc003jlb.1_Missense_Mutation_p.D209N	NM_152403	NP_689616	Q63HQ2	EGFLA_HUMAN	EGF-like, fibronectin type III and laminin G	209	Fibronectin type-III 2.					cell junction|proteinaceous extracellular matrix|synapse				pancreas(3)|skin(3)|ovary(1)	7	all_lung(31;0.000385)					CCTCGATCCAGATACCAACTA	0.532													18	34					0	0	0.000958276	0	0
C5orf39	389289	broad.mit.edu	37	5	43039764	43039764	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr5:43039764G>A	uc003jnf.2	-	1	684	c.385C>T	c.(385-387)CCC>TCC	p.P129S	C5orf39_uc010ivj.1_RNA|LOC153684_uc003jng.2_5'Flank|LOC153684_uc003jni.2_5'Flank	NM_001014279	NP_001014301	Q3ZCQ2	AX2R_HUMAN	annexin II receptor	129							receptor activity				0						CTGTCCCAGGGATGGAGAGGA	0.642											OREG0016598	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	8	47					0	0	0.000157383	0	0
FST	10468	broad.mit.edu	37	5	52781804	52781804	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr5:52781804G>A	uc003jpd.2	+	6	1003	c.976G>A	c.(976-978)GAG>AAG	p.E326K	FST_uc003jpc.2_3'UTR	NM_013409	NP_037541	P19883	FST_HUMAN	follistatin isoform FST344 precursor	326	Asp/Glu-rich (highly acidic).				hemopoietic progenitor cell differentiation|negative regulation of activin receptor signaling pathway|negative regulation of follicle-stimulating hormone secretion|negative regulation of transcription from RNA polymerase II promoter|positive regulation of hair follicle development	extracellular region	activin binding|protein binding|signal transducer activity				0		Ovarian(174;1.78e-06)|Lung NSC(810;3.55e-06)|Breast(144;4.08e-05)				CACCGAGGAAGAGGAGGAAGA	0.443													49	80					0	0	0.000781405	0	0
RGS7BP	401190	broad.mit.edu	37	5	63894252	63894252	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr5:63894252G>A	uc003jtj.2	+	5	672	c.672G>A	c.(670-672)TTG>TTA	p.L224L	RGS7BP_uc011cqu.1_Silent_p.L91L	NM_001029875	NP_001025046	Q6MZT1	R7BP_HUMAN	regulator of G-protein signaling 7 binding	224					negative regulation of signal transduction	cytoplasm|nucleus|plasma membrane					0		Lung NSC(810;0.000518)|Prostate(74;0.0435)|Ovarian(174;0.186)		Lung(70;0.147)		CTTTACCATTGAAAAATCAAG	0.343													7	79					0	0	0.000157383	0	0
ADAMTS6	11174	broad.mit.edu	37	5	64511253	64511253	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr5:64511253C>T	uc003jtp.2	-	19	3148	c.2334G>A	c.(2332-2334)AGG>AGA	p.R778R	ADAMTS6_uc003jto.2_RNA|ADAMTS6_uc003jtq.2_RNA|ADAMTS6_uc003jtr.1_Silent_p.R399R	NM_197941	NP_922932	Q9UKP5	ATS6_HUMAN	ADAM metallopeptidase with thrombospondin type 1	778	Spacer.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Lung NSC(167;2.44e-06)|Prostate(74;0.014)|Ovarian(174;0.0549)|Breast(144;0.111)|Colorectal(97;0.235)		Lung(70;0.00942)		CATCAAATTTCCTAGGCCAGT	0.378													20	34					0	0	0.00152264	0	0
AGGF1	55109	broad.mit.edu	37	5	76332495	76332495	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr5:76332495G>A	uc003ket.2	+	4	991	c.631G>A	c.(631-633)GAA>AAA	p.E211K	AGGF1_uc003keu.1_RNA	NM_018046	NP_060516	Q8N302	AGGF1_HUMAN	angiogenic factor VG5Q	211					angiogenesis|cell adhesion|positive regulation of angiogenesis|positive regulation of endothelial cell proliferation|RNA processing|vasculogenesis	extracellular region|perinuclear region of cytoplasm	eukaryotic cell surface binding|nucleic acid binding|protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_lung(232;0.000414)|Lung NSC(167;0.0011)|Ovarian(174;0.0129)|Prostate(461;0.11)		OV - Ovarian serous cystadenocarcinoma(54;4.51e-51)|Epithelial(54;2.2e-45)|all cancers(79;6.68e-41)		TAGTTATGATGAAAATACTGG	0.333													10	512					0	0	0.00185496	0	0
HAPLN1	1404	broad.mit.edu	37	5	82948429	82948429	+	Nonsense_Mutation	SNP	A	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr5:82948429A>T	uc003kim.2	-	2	386	c.315T>A	c.(313-315)TAT>TAA	p.Y105*	HAPLN1_uc003kin.2_Nonsense_Mutation_p.Y105*	NM_001884	NP_001875	P10915	HPLN1_HUMAN	hyaluronan and proteoglycan link protein 1	105	Ig-like V-type.				cell adhesion	proteinaceous extracellular matrix	hyaluronic acid binding			large_intestine(3)|ovary(1)|skin(1)	5		Lung NSC(167;0.0484)|all_lung(232;0.0522)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;7.82e-42)|Epithelial(54;5.88e-35)|all cancers(79;1.14e-29)		GGTAGCCTCCATAGGTTTTTT	0.433													21	70					0	0	0.00229938	0	0
GPR98	84059	broad.mit.edu	37	5	89923146	89923146	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr5:89923146G>A	uc003kju.2	+	7	887	c.791G>A	c.(790-792)AGA>AAA	p.R264K	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	264	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		AGTCCCGTGAGATTCCTTCAG	0.363													30	64					0	0	0.001512	0	0
MCTP1	79772	broad.mit.edu	37	5	94275877	94275877	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr5:94275877G>A	uc003kkx.2	-	5	1084	c.1084C>T	c.(1084-1086)CTG>TTG	p.L362L	MCTP1_uc003kkv.2_Silent_p.L141L|MCTP1_uc003kkw.2_Silent_p.L141L|MCTP1_uc003kkz.2_Silent_p.L23L	NM_024717	NP_078993	Q6DN14	MCTP1_HUMAN	multiple C2 domains, transmembrane 1 isoform L	362					calcium-mediated signaling	integral to membrane|membrane fraction	calcium ion binding			ovary(2)	2		all_cancers(142;1.68e-05)|all_epithelial(76;1.51e-07)|all_lung(232;0.0167)|Lung NSC(167;0.0207)|Ovarian(225;0.0218)|Colorectal(57;0.207)		all cancers(79;9.1e-17)		GGATCTTTCAGAGTAAGGGTC	0.353													15	15					0	0	0.000422831	0	0
SLCO6A1	133482	broad.mit.edu	37	5	101815889	101815889	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr5:101815889C>T	uc003knn.2	-	2	780	c.608G>A	c.(607-609)GGA>GAA	p.G203E	SLCO6A1_uc003kno.2_Missense_Mutation_p.G203E|SLCO6A1_uc003knp.2_Missense_Mutation_p.G203E|SLCO6A1_uc003knq.2_Missense_Mutation_p.G203E	NM_173488	NP_775759	Q86UG4	SO6A1_HUMAN	solute carrier organic anion transporter family,	203	Extracellular (Potential).					integral to membrane|plasma membrane	transporter activity			ovary(3)|skin(3)|central_nervous_system(1)	7		all_cancers(142;8e-09)|all_epithelial(76;2.83e-12)|Prostate(80;0.00125)|Colorectal(57;0.00342)|Ovarian(225;0.024)|Lung NSC(167;0.0259)|all_lung(232;0.0323)		Epithelial(69;1.47e-15)|COAD - Colon adenocarcinoma(37;0.0113)		ACCTTCAATTCCTACCTTACT	0.294													5	11					0	0	0.000602214	0	0
SNCAIP	9627	broad.mit.edu	37	5	121786808	121786808	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr5:121786808G>A	uc003ksw.1	+	10	2472	c.2266G>A	c.(2266-2268)GAA>AAA	p.E756K	SNCAIP_uc011cwl.1_Missense_Mutation_p.E314K|SNCAIP_uc003ksx.1_Missense_Mutation_p.E803K|SNCAIP_uc003ksy.1_Missense_Mutation_p.E390K|SNCAIP_uc003ksz.1_Missense_Mutation_p.E390K|SNCAIP_uc010jcu.2_Missense_Mutation_p.E352K|SNCAIP_uc011cwm.1_Missense_Mutation_p.E390K|SNCAIP_uc003kta.1_Missense_Mutation_p.E388K|SNCAIP_uc010jcv.1_RNA|SNCAIP_uc010jcw.1_Missense_Mutation_p.E450K|SNCAIP_uc010jcx.1_Missense_Mutation_p.E696K|uc003ktb.1_Intron|SNCAIP_uc003ktc.1_Missense_Mutation_p.E272K	NM_005460	NP_005451	Q9Y6H5	SNCAP_HUMAN	synuclein alpha interacting protein	756					cell death|dopamine metabolic process|regulation of inclusion body assembly|regulation of neurotransmitter secretion	cytoplasm|neuronal cell body|nucleolus|presynaptic membrane	ubiquitin protein ligase binding			ovary(1)|pancreas(1)	2		all_cancers(142;0.00787)|Prostate(80;0.0327)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	OV - Ovarian serous cystadenocarcinoma(64;0.000625)|Epithelial(69;0.00216)|all cancers(49;0.0232)		AGAGAGCAGCGAACCAGACTT	0.577													5	21					0	0	0.000602214	0	0
FBN2	2201	broad.mit.edu	37	5	127730894	127730894	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr5:127730894C>T	uc003kuu.2	-	9	1591	c.1152G>A	c.(1150-1152)ACG>ACA	p.T384T	FBN2_uc003kuv.2_Silent_p.T351T	NM_001999	NP_001990	P35556	FBN2_HUMAN	fibrillin 2 precursor	384	TB 2.				bone trabecula formation|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	microfibril	calcium ion binding|extracellular matrix structural constituent			ovary(8)|large_intestine(4)|pancreas(1)|kidney(1)|skin(1)	15		all_cancers(142;0.0216)|Prostate(80;0.0551)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0821)|Epithelial(69;0.146)		ACTGCATTTTCGTCATTCTCC	0.547													6	22					0	0	0.00198382	0	0
FSTL4	23105	broad.mit.edu	37	5	132939584	132939584	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr5:132939584C>T	uc003kyn.1	-	2	309	c.91G>A	c.(91-93)GGC>AGC	p.G31S		NM_015082	NP_055897	Q6MZW2	FSTL4_HUMAN	follistatin-like 4 precursor	31						extracellular region	calcium ion binding			central_nervous_system(1)|skin(1)	2		all_cancers(142;0.244)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			ACATCCGGGCCTCTGCTGGTT	0.537													18	84					0	0	0.00121646	0	0
CD14	929	broad.mit.edu	37	5	140011896	140011896	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr5:140011896G>A	uc003lgi.1	-	2	1027	c.673C>T	c.(673-675)CAG>TAG	p.Q225*	CD14_uc003lgj.1_Nonsense_Mutation_p.Q225*	NM_000591	NP_000582	P08571	CD14_HUMAN	CD14 antigen precursor	225	LRR 7.				apoptosis|cellular response to lipopolysaccharide|cellular response to lipoteichoic acid|inflammatory response|innate immune response|phagocytosis|positive regulation of tumor necrosis factor production|Toll signaling pathway	anchored to membrane|plasma membrane	lipopolysaccharide binding|lipoteichoic acid binding|opsonin receptor activity|peptidoglycan receptor activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCTAGATTCTGGATGGCCGGG	0.652													18	65					0	0	0.00121646	0	0
PCDHA2	56146	broad.mit.edu	37	5	140175729	140175729	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr5:140175729C>T	uc003lhd.2	+	1	1286	c.1180C>T	c.(1180-1182)CCT>TCT	p.P394S	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhc.1_Missense_Mutation_p.P394S|PCDHA2_uc011czy.1_Missense_Mutation_p.P394S	NM_018905	NP_061728	Q9Y5H9	PCDA2_HUMAN	protocadherin alpha 2 isoform 1 precursor	394	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCCCCACGTCCCTTTCAAGCT	0.587													34	112					0	0	0.000814825	0	0
PCDHA3	56145	broad.mit.edu	37	5	140183149	140183149	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr5:140183149G>A	uc003lhf.2	+	1	2367	c.2367G>A	c.(2365-2367)CAG>CAA	p.Q789Q	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA2_uc011czy.1_Intron|PCDHA3_uc011czz.1_Silent_p.Q789Q	NM_018906	NP_061729	Q9Y5H8	PCDA3_HUMAN	protocadherin alpha 3 isoform 1 precursor	789	Cytoplasmic (Potential).|6 X 4 AA repeats of P-X-X-P.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(6)|skin(2)	8			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGGAGAAACAGGATGTGGACG	0.453													48	52					0	0	0.000781405	0	0
PCDHA8	56140	broad.mit.edu	37	5	140222135	140222135	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr5:140222135A>T	uc003lhs.2	+	1	1229	c.1229A>T	c.(1228-1230)GAC>GTC	p.D410V	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhr.1_Missense_Mutation_p.D410V	NM_018911	NP_061734	Q9Y5H6	PCDA8_HUMAN	protocadherin alpha 8 isoform 1 precursor	410	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			upper_aerodigestive_tract(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TTGGTGCTGGACAGCGCCCTG	0.627													40	189					0	0	0.000680045	0	0
PCDHA11	56138	broad.mit.edu	37	5	140249340	140249340	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr5:140249340G>A	uc003lia.2	+	1	1510	c.652G>A	c.(652-654)GGA>AGA	p.G218R	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc011dae.1_Missense_Mutation_p.G218R	NM_018902	NP_061725	Q9Y5I1	PCDAB_HUMAN	protocadherin alpha 11 isoform 1 precursor	218	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TACAGACGGGGGAAAACCAGA	0.413													6	20					0	0	0.00116845	0	0
PCDHA12	56137	broad.mit.edu	37	5	140257140	140257140	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr5:140257140G>A	uc003lic.2	+	1	2210	c.2083G>A	c.(2083-2085)GAT>AAT	p.D695N	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc011daf.1_Missense_Mutation_p.D695N	NM_018903	NP_061726	Q9UN75	PCDAC_HUMAN	protocadherin alpha 12 isoform 1 precursor	695	Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGCTCTGGTGGATATTAACGT	0.652													9	42					0	0	0.000673444	0	0
PCDHB1	29930	broad.mit.edu	37	5	140433100	140433100	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr5:140433100G>A	uc003lik.1	+	1	2122	c.2045G>A	c.(2044-2046)AGA>AAA	p.R682K		NM_013340	NP_037472	Q9Y5F3	PCDB1_HUMAN	protocadherin beta 1 precursor	682	Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AAGCATTCTAGAAAGGTAAAT	0.438													62	114					0	0	0.000781405	0	0
PCDHB6	56130	broad.mit.edu	37	5	140530281	140530281	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr5:140530281G>A	uc003lir.2	+	1	443	c.443G>A	c.(442-444)GGA>GAA	p.G148E	PCDHB6_uc011dah.1_Missense_Mutation_p.G12E	NM_018939	NP_061762	Q9Y5E3	PCDB6_HUMAN	protocadherin beta 6 precursor	148	Cadherin 2.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ACTATGCCAGGAAAGATATTT	0.463													74	97					0	0	0.000781405	0	0
PCDHB7	56129	broad.mit.edu	37	5	140554139	140554139	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr5:140554139C>T	uc003lit.2	+	1	1897	c.1723C>T	c.(1723-1725)CCG>TCG	p.P575S		NM_018940	NP_061763	Q9Y5E2	PCDB7_HUMAN	protocadherin beta 7 precursor	575	Cadherin 6.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|central_nervous_system(1)|skin(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CTGCACCGAGCCGTTGCCCCG	0.701													16	65					0	0	0.000308642	0	0
PCDHB7	56129	broad.mit.edu	37	5	140554452	140554452	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr5:140554452A>G	uc003lit.2	+	1	2210	c.2036A>G	c.(2035-2037)GAC>GGC	p.D679G	PCDHB8_uc011dai.1_5'Flank	NM_018940	NP_061763	Q9Y5E2	PCDB7_HUMAN	protocadherin beta 7 precursor	679	Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|central_nervous_system(1)|skin(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GCGGCCCCGGACCAGGCCAAC	0.701													5	225					0	0	0.00198382	0	0
PCDHB11	56125	broad.mit.edu	37	5	140580861	140580861	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr5:140580861C>T	uc003liy.2	+	1	1514	c.1514C>T	c.(1513-1515)TCC>TTC	p.S505F	PCDHB11_uc011daj.1_Missense_Mutation_p.S140F	NM_018931	NP_061754	Q9Y5F2	PCDBB_HUMAN	protocadherin beta 11 precursor	505	Extracellular (Potential).|Cadherin 5.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TCCCTGGTCTCCATCAACACA	0.652													34	187					0	0	0.000953801	0	0
PCDHGA1	56114	broad.mit.edu	37	5	140710395	140710395	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr5:140710395C>T	uc003lji.1	+	1	144	c.144C>T	c.(142-144)ATC>ATT	p.I48I	PCDHGA1_uc011dan.1_Silent_p.I48I	NM_018912	NP_061735	Q9Y5H4	PCDG1_HUMAN	protocadherin gamma subfamily A, 1 isoform 1	48	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|breast(1)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TAGGCAACATCGCCAAGGACC	0.552													22	104					0	0	0.00188189	0	0
PCDHGA1	56114	broad.mit.edu	37	5	140712150	140712150	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr5:140712150G>A	uc003lji.1	+	1	1899	c.1899G>A	c.(1897-1899)CTG>CTA	p.L633L	PCDHGA1_uc011dan.1_Silent_p.L633L	NM_018912	NP_061735	Q9Y5H4	PCDG1_HUMAN	protocadherin gamma subfamily A, 1 isoform 1	633	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|breast(1)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GAGCCCTGCTGGACAGAGACG	0.701													10	57					0	0	0.00136819	0	0
PCDHGC5	56097	broad.mit.edu	37	5	140870659	140870659	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr5:140870659C>T	uc003lla.1	+	1	1852	c.1852C>T	c.(1852-1854)CTG>TTG	p.L618L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lkp.1_Intron|PCDHGA11_uc003lkq.1_Intron|PCDHGA12_uc003lkt.1_Intron|PCDHGC3_uc003lkv.1_Intron|PCDHGC3_uc003lkw.1_Intron|PCDHGC4_uc003lky.1_Intron|PCDHGC5_uc011dbc.1_Silent_p.L618L	NM_018929	NP_061752	Q9Y5F6	PCDGM_HUMAN	protocadherin gamma subfamily C, 5 isoform 1	618	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGCCCCAGGACTGTTCCTCGT	0.602													18	40					0	0	0.000958276	0	0
SH3RF2	153769	broad.mit.edu	37	5	145393605	145393605	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr5:145393605C>T	uc003lnt.2	+	5	1278	c.1040C>T	c.(1039-1041)CCT>CTT	p.P347L	SH3RF2_uc011dbl.1_Missense_Mutation_p.P347L	NM_152550	NP_689763	Q8TEC5	SH3R2_HUMAN	SH3 domain containing ring finger 2	347							ligase activity|protein phosphatase 1 binding|zinc ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GCAGACGTTCCTTCCAGCTGT	0.527													24	34					0	0	0.000586117	0	0
SPINK6	404203	broad.mit.edu	37	5	147593499	147593499	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr5:147593499C>T	uc003lpa.2	+	3	364	c.108C>T	c.(106-108)CCC>CCT	p.P36P		NM_205841	NP_995313	Q6UWN8	ISK6_HUMAN	serine protease inhibitor, Kazal type 6	36	Kazal-like.					extracellular region	serine-type endopeptidase inhibitor activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCCAGGACCCCAAGGTCTACT	0.458													13	40					0	0	0.000308642	0	0
RBM22	55696	broad.mit.edu	37	5	150078131	150078131	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr5:150078131C>T	uc003lst.2	-	4	323	c.201G>A	c.(199-201)AAG>AAA	p.K67K		NM_018047	NP_060517	Q9NW64	RBM22_HUMAN	RNA binding motif protein 22	67					protein import into nucleus, translocation	catalytic step 2 spliceosome|cytoplasm	calcium-dependent protein binding|nucleotide binding|RNA binding|zinc ion binding				0		Medulloblastoma(196;0.167)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			ACACTTCAGTCTTCTTGAAAC	0.463													12	77					0	0	0.00244969	0	0
FAT2	2196	broad.mit.edu	37	5	150930261	150930261	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr5:150930261C>T	uc003lue.3	-	7	4481	c.4468G>A	c.(4468-4470)GAC>AAC	p.D1490N	GM2A_uc011dcs.1_Intron	NM_001447	NP_001438	Q9NYQ8	FAT2_HUMAN	FAT tumor suppressor 2 precursor	1490	Extracellular (Potential).|Cadherin 13.				epithelial cell migration|homophilic cell adhesion	cell-cell adherens junction|integral to membrane|nucleus	calcium ion binding			ovary(4)|upper_aerodigestive_tract(1)|skin(1)	6		Medulloblastoma(196;0.0912)|all_hematologic(541;0.104)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			CTTCCTGGGTCTTGGCTGCCA	0.587													15	24					0	0	0.00244969	0	0
TIMD4	91937	broad.mit.edu	37	5	156378677	156378678	+	Missense_Mutation	DNP	GG	TT	TT	rs150170341		TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr5:156378677_156378678GG>TT	uc003lwh.2	-	3	581_582	c.524_525CC>AA	c.(523-525)CCC>CAA	p.P175Q	TIMD4_uc010jii.2_Missense_Mutation_p.P175Q	NM_138379	NP_612388	Q96H15	TIMD4_HUMAN	T-cell immunoglobulin and mucin domain	175	Extracellular (Potential).|Thr-rich.					integral to membrane				ovary(2)	2	Renal(175;0.00488)	Medulloblastoma(196;0.0523)|all_neural(177;0.21)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			TTGTGAGATCGGGTGTGGTCAC	0.545													9	615					0	0	6.4e-05	0	0
TIMD4	91937	broad.mit.edu	37	5	156378783	156378783	+	Missense_Mutation	SNP	C	T	T	rs147239944		TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr5:156378783C>T	uc003lwh.2	-	3	476	c.419G>A	c.(418-420)AGA>AAA	p.R140K	TIMD4_uc010jii.2_Missense_Mutation_p.R140K	NM_138379	NP_612388	Q96H15	TIMD4_HUMAN	T-cell immunoglobulin and mucin domain	140	Extracellular (Potential).|Thr-rich.					integral to membrane				ovary(2)	2	Renal(175;0.00488)	Medulloblastoma(196;0.0523)|all_neural(177;0.21)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			GGTTGCTGTTCTGTGCGTGGT	0.453													220	409					0	0	0.000781405	0	0
ADAM19	8728	broad.mit.edu	37	5	156915476	156915476	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr5:156915476G>A	uc003lwz.2	-	21	2411	c.2347C>T	c.(2347-2349)CTG>TTG	p.L783L	ADAM19_uc003lww.1_Silent_p.L516L|ADAM19_uc003lwy.2_Silent_p.L382L|ADAM19_uc011ddr.1_Silent_p.L714L	NM_033274	NP_150377	Q9H013	ADA19_HUMAN	ADAM metallopeptidase domain 19 preproprotein	783	Cytoplasmic (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|SH3 domain binding|zinc ion binding			ovary(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	8	Renal(175;0.00488)	Medulloblastoma(196;0.0359)|all_neural(177;0.14)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			GGCTTCCGCAGGATTTCCGGA	0.582													8	41					0	0	0.000442599	0	0
GABRA6	2559	broad.mit.edu	37	5	161128738	161128738	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr5:161128738C>T	uc003lyu.2	+	9	1659	c.1321C>T	c.(1321-1323)CTT>TTT	p.L441F	GABRA6_uc003lyv.2_Missense_Mutation_p.L212F	NM_000811	NP_000802	Q16445	GBRA6_HUMAN	gamma-aminobutyric acid A receptor, alpha 6	441	Helical; (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity			ovary(7)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Renal(175;0.00259)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)		Alprazolam(DB00404)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	GGTAGTTTATCTTTCCAAAGA	0.418										TCGA Ovarian(5;0.080)			18	20					0	0	0.00121646	0	0
GABRG2	2566	broad.mit.edu	37	5	161569285	161569285	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr5:161569285G>A	uc003lyz.3	+	7	1243	c.885G>A	c.(883-885)TGG>TGA	p.W295*	GABRG2_uc010jjc.2_Nonsense_Mutation_p.W335*|GABRG2_uc003lyy.3_Nonsense_Mutation_p.W295*|GABRG2_uc011dej.1_Nonsense_Mutation_p.W200*	NM_000816	NP_000807	P18507	GBRG2_HUMAN	gamma-aminobutyric acid A receptor, gamma 2	295	Helical; (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity|protein binding			ovary(4)|skin(1)	5	Renal(175;0.000319)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0734)|OV - Ovarian serous cystadenocarcinoma(192;0.135)|Epithelial(171;0.136)		TGTCTTTCTGGATCAATAAGG	0.403													41	35					0	0	0.00222228	0	0
ODZ2	57451	broad.mit.edu	37	5	167489169	167489169	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr5:167489169C>T	uc010jjd.2	+	7	1414	c.1414C>T	c.(1414-1416)CAC>TAC	p.H472Y	ODZ2_uc003lzq.2_Missense_Mutation_p.H351Y|ODZ2_uc003lzr.3_Missense_Mutation_p.H240Y	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		GTCACAAATTCACATCAGTCA	0.493													7	24					0	0	0.00198382	0	0
WWC1	23286	broad.mit.edu	37	5	167891912	167891913	+	Missense_Mutation	DNP	AG	CC	CC			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr5:167891912_167891913AG>CC	uc003lzu.2	+	21	3188_3189	c.3095_3096AG>CC	c.(3094-3096)CAG>CCC	p.Q1032P	WWC1_uc003lzv.2_Missense_Mutation_p.Q1038P|WWC1_uc011den.1_Missense_Mutation_p.Q1038P|WWC1_uc003lzw.2_Missense_Mutation_p.Q831P|WWC1_uc010jjf.1_Missense_Mutation_p.Q304P	NM_015238	NP_056053	Q8IX03	KIBRA_HUMAN	WW and C2 domain containing 1 isoform 3	1032	Potential.|Interaction with histone H3.				cell migration|positive regulation of MAPKKK cascade|regulation of hippo signaling cascade|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|perinuclear region of cytoplasm|ruffle membrane	protein binding|transcription coactivator activity			ovary(2)|skin(2)|breast(1)	5	Renal(175;0.000212)|Lung NSC(126;0.0875)|all_lung(126;0.166)	Medulloblastoma(196;0.0399)|all_neural(177;0.0577)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0364)|Epithelial(171;0.0765)|OV - Ovarian serous cystadenocarcinoma(192;0.0918)		GAGCTGCCACAGTGGTTGCGTG	0.619													12	55					0	0	6.4e-05	0	0
SLIT3	6586	broad.mit.edu	37	5	168135017	168135017	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr5:168135017C>T	uc003mab.2	-	26	3228	c.2808G>A	c.(2806-2808)GTG>GTA	p.V936V	SLIT3_uc010jjg.2_Silent_p.V943V	NM_003062	NP_003053	O75094	SLIT3_HUMAN	slit homolog 3 precursor	936	EGF-like 1.				apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			GGTACAGCTCCACAGGGTCCT	0.612													5	37					0	0	0.00198382	0	0
SLIT3	6586	broad.mit.edu	37	5	168189612	168189612	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr5:168189612C>T	uc003mab.2	-	15	1962	c.1542G>A	c.(1540-1542)ACG>ACA	p.T514T	SLIT3_uc010jjg.2_Silent_p.T514T	NM_003062	NP_003053	O75094	SLIT3_HUMAN	slit homolog 3 precursor	514	LRRNT 3.				apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			AGTCCACAATCGTGCCCTCAC	0.597													31	104					0	0	0.0024448	0	0
DOCK2	1794	broad.mit.edu	37	5	169435601	169435601	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr5:169435601A>G	uc003maf.2	+	31	3253	c.3173A>G	c.(3172-3174)AAG>AGG	p.K1058R	DOCK2_uc011der.1_RNA|DOCK2_uc010jjm.2_Missense_Mutation_p.K550R	NM_004946	NP_004937	Q92608	DOCK2_HUMAN	dedicator of cytokinesis 2	1058	Interaction with CRKL.				actin cytoskeleton organization|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|endomembrane system|membrane	electron carrier activity|GTP binding|GTPase binding|heme binding|Rac guanyl-nucleotide exchange factor activity|T cell receptor binding			ovary(5)|pancreas(2)	7	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			ATCCTGAATAAGTAGGTTGCA	0.468													5	25					0	0	0.000602214	0	0
KCNIP1	30820	broad.mit.edu	37	5	170149737	170149737	+	Silent	SNP	G	A	A	rs147147696	byFrequency	TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr5:170149737G>A	uc003mas.2	+	6	910	c.381G>A	c.(379-381)TCG>TCA	p.S127S	KCNIP1_uc003map.2_Silent_p.S125S|KCNIP1_uc003mat.2_Silent_p.S116S|KCNIP1_uc010jjp.2_Silent_p.S88S|KCNIP1_uc010jjq.2_Silent_p.S141S	NM_001034837	NP_001030009	Q9NZI2	KCIP1_HUMAN	Kv channel interacting protein 1 isoform 1	127	EF-hand 2.				detection of calcium ion|signal transduction|synaptic transmission	plasma membrane	potassium channel activity|voltage-gated ion channel activity	p.S127S(1)		skin(2)	2	Renal(175;0.000159)|Lung NSC(126;0.0191)|all_lung(126;0.0297)	Medulloblastoma(196;0.0109)|all_neural(177;0.0177)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			CCGCTCTGTCGATTTTATTGA	0.438													9	20					0	0	0.000978159	0	0
TLX3	30012	broad.mit.edu	37	5	170737323	170737323	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr5:170737323G>A	uc003mbf.2	+	2	673	c.591G>A	c.(589-591)GCG>GCA	p.A197A	uc003mbe.1_5'Flank	NM_021025	NP_066305	O43711	TLX3_HUMAN	T-cell leukemia homeobox 3	197	Homeobox.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1	Renal(175;0.000159)|Lung NSC(126;0.00576)|all_lung(126;0.00963)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			CCGAGAGGGCGGCGCTCGCCA	0.632			T	BCL11B	T-ALL								4	12					0	0	0.000602214	0	0
FAM153B	202134	broad.mit.edu	37	5	175530253	175530253	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr5:175530253G>A	uc003mdk.2	+	13	745	c.688G>A	c.(688-690)GAG>AAG	p.E230K		NM_001079529	NP_001072997	P0C7A2	F153B_HUMAN	hypothetical protein LOC202134	230										ovary(1)	1	all_cancers(89;0.00406)|Renal(175;0.000269)|Lung NSC(126;0.0103)|all_lung(126;0.0164)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)|all_hematologic(541;0.214)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000183)	Kidney(146;0.0965)		TGTACTTCAGGAGCTGTCCAG	0.488													60	269					0	0	0.000781405	0	0
FAM153A	285596	broad.mit.edu	37	5	177161911	177161911	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr5:177161911C>T	uc010jkp.1	-	14	878	c.457G>A	c.(457-459)GAG>AAG	p.E153K	FAM153A_uc011dgd.1_Intron|FAM153A_uc003mib.1_RNA|FAM153A_uc003mic.2_Missense_Mutation_p.E153K	NM_173663	NP_775934	Q9UHL3	F153A_HUMAN	hypothetical protein LOC285596	153										skin(1)	1	all_cancers(89;0.00033)|Renal(175;0.000269)|Lung NSC(126;0.00161)|all_lung(126;0.00286)	all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CTGGACAGCTCCTGAAGTACA	0.483													9	12					0	0	0.00185496	0	0
ZNF354A	6940	broad.mit.edu	37	5	178139264	178139264	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr5:178139264G>A	uc003mjj.2	-	5	1813	c.1615C>T	c.(1615-1617)CAG>TAG	p.Q539*		NM_005649	NP_005640	O60765	Z354A_HUMAN	zinc finger protein 354A	539	C2H2-type 11.				regulation of transcription from RNA polymerase II promoter|sensory perception of sound|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|skin(1)	3	all_cancers(89;0.000536)|Renal(175;0.000159)|all_epithelial(37;0.000221)|Lung NSC(126;0.00308)|all_lung(126;0.00536)	all_cancers(40;0.0452)|all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.185)		CTTCGATGCTGAATAAGAGCT	0.368													16	87					0	0	0.000566183	0	0
RASGEF1C	255426	broad.mit.edu	37	5	179541542	179541542	+	Splice_Site	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr5:179541542C>T	uc003mlq.2	-	10	1381	c.1084_splice	c.e10-1	p.I362_splice	RASGEF1C_uc003mlr.2_Splice_Site_p.I362_splice|RASGEF1C_uc003mlp.3_Splice_Site_p.I211_splice	NM_175062	NP_778232	Q8N431	RGF1C_HUMAN	RasGEF domain family, member 1C						regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	intracellular	guanyl-nucleotide exchange factor activity			ovary(1)	1	all_cancers(89;3.44e-05)|all_epithelial(37;1.22e-05)|Renal(175;0.000269)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.137)	all_cancers(40;0.0242)|Medulloblastoma(196;0.00498)|all_neural(177;0.0137)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GAATGACAATCTGGAAGAAAG	0.602													11	26					0	0	0.000978159	0	0
GFPT2	9945	broad.mit.edu	37	5	179744010	179744010	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr5:179744010G>A	uc003mlw.1	-	11	1105	c.1007C>T	c.(1006-1008)TCA>TTA	p.S336L		NM_005110	NP_005101	O94808	GFPT2_HUMAN	glutamine-fructose-6-phosphate transaminase 2	336					dolichol-linked oligosaccharide biosynthetic process|energy reserve metabolic process|fructose 6-phosphate metabolic process|glutamine metabolic process|post-translational protein modification|protein N-linked glycosylation via asparagine|UDP-N-acetylglucosamine biosynthetic process	cytosol	glutamine-fructose-6-phosphate transaminase (isomerizing) activity|sugar binding			ovary(1)|skin(1)	2	all_cancers(89;4.97e-05)|all_epithelial(37;1.22e-05)|Renal(175;0.000269)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.137)	Medulloblastoma(196;0.0392)|all_neural(177;0.0529)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)		L-Glutamine(DB00130)	ATTGAAAACTGATTCTGGCTG	0.438													40	80					0	0	0.00222228	0	0
RREB1	6239	broad.mit.edu	37	6	7229544	7229544	+	Silent	SNP	C	T	T	rs142150270	byFrequency	TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr6:7229544C>T	uc003mxc.2	+	10	1602	c.1212C>T	c.(1210-1212)CCC>CCT	p.P404P	RREB1_uc003mxb.2_Silent_p.P404P|RREB1_uc010jnx.2_Silent_p.P404P	NM_001003698	NP_001003698	Q92766	RREB1_HUMAN	ras responsive element binding protein 1 isoform	404					multicellular organismal development|positive regulation of transcription, DNA-dependent|Ras protein signal transduction|transcription from RNA polymerase II promoter	cytoplasm|nuclear speck	DNA binding|zinc ion binding			ovary(4)|large_intestine(2)|pancreas(2)|skin(2)|breast(1)	11	Ovarian(93;0.0398)	all_hematologic(90;0.0384)|Prostate(151;0.191)				CTCAGGACCCCGGCTGCACCA	0.602													11	36					0	0	0.000673444	0	0
RNF182	221687	broad.mit.edu	37	6	13977773	13977773	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr6:13977773C>T	uc003nbe.2	+	3	841	c.423C>T	c.(421-423)TCC>TCT	p.S141S	RNF182_uc003nbf.2_Silent_p.S141S|RNF182_uc003nbg.2_Silent_p.S141S	NM_152737	NP_689950	Q8N6D2	RN182_HUMAN	ring finger protein 182	141						cytoplasm|integral to membrane|intracellular membrane-bounded organelle	protein binding|ubiquitin-protein ligase activity|zinc ion binding			large_intestine(2)|ovary(1)	3	Breast(50;0.00405)|Ovarian(93;0.0964)	all_hematologic(90;0.135)	Epithelial(50;0.195)			GAGAGAGCTCCCCGTCCCTGA	0.557													5	26					0	0	0.00116845	0	0
LRRC16A	55604	broad.mit.edu	37	6	25471398	25471398	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr6:25471398C>T	uc011djw.1	+	10	1068	c.692C>T	c.(691-693)TCC>TTC	p.S231F	LRRC16A_uc010jpx.2_Missense_Mutation_p.S231F|LRRC16A_uc010jpy.2_Missense_Mutation_p.S231F|LRRC16A_uc003nez.1_Missense_Mutation_p.S70F	NM_017640	NP_060110	Q5VZK9	LR16A_HUMAN	leucine rich repeat containing 16A	231					actin filament organization|blood coagulation|cell migration|lamellipodium assembly|ruffle organization|urate metabolic process	cytosol|lamellipodium|nucleus				ovary(1)|breast(1)|central_nervous_system(1)|pancreas(1)	4						CTGTTACAGTCCACTGATGTC	0.348													33	61					0	0	0.00111076	0	0
TRIM38	10475	broad.mit.edu	37	6	25966959	25966959	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr6:25966959G>A	uc003nfm.2	+	3	644	c.209G>A	c.(208-210)AGC>AAC	p.S70N	TRIM38_uc003nfn.2_Missense_Mutation_p.S70N	NM_006355	NP_006346	O00635	TRI38_HUMAN	tripartite motif-containing 38	70					positive regulation of I-kappaB kinase/NF-kappaB cascade	intracellular	signal transducer activity|zinc ion binding				0						CATATGGATAGCCTCCGACCC	0.493													20	23					0	0	0.00121646	0	0
OR2B3	442184	broad.mit.edu	37	6	29054407	29054407	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr6:29054407G>A	uc003nlx.2	-	1	684	c.619C>T	c.(619-621)CTT>TTT	p.L207F		NM_001005226	NP_001005226			olfactory receptor, family 2, subfamily B,											skin(1)	1						GGAATTAGAAGAATTAGTACA	0.433													23	32					0	0	0.00229938	0	0
OR5V1	81696	broad.mit.edu	37	6	29323094	29323094	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr6:29323094C>T	uc011dlo.1	-	1	961	c.879G>A	c.(877-879)AGG>AGA	p.R293R		NM_030876	NP_110503	Q9UGF6	OR5V1_HUMAN	olfactory receptor, family 5, subfamily V,	293	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|kidney(1)	4						TGTCCTTATTCCTCAATGTGT	0.403													8	51					0	0	0.000274275	0	0
MOG	4340	broad.mit.edu	37	6	29627242	29627242	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr6:29627242C>T	uc003nnf.2	+	2	413	c.235C>T	c.(235-237)CTC>TTC	p.L79F	MOG_uc003qzk.1_Missense_Mutation_p.L79F|MOG_uc010kle.1_Intron|MOG_uc010klf.1_Intron|MOG_uc003nmy.1_Missense_Mutation_p.L79F|MOG_uc003nmz.2_Missense_Mutation_p.L79F|MOG_uc011dlt.1_Intron|MOG_uc003nna.2_Intron|MOG_uc011dlu.1_Intron|MOG_uc011dlv.1_Intron|MOG_uc003nnd.2_Missense_Mutation_p.L79F|MOG_uc003nne.2_Missense_Mutation_p.L79F|MOG_uc003nng.2_Missense_Mutation_p.L79F|MOG_uc003nnh.2_Missense_Mutation_p.L79F|MOG_uc003nni.2_Missense_Mutation_p.L79F|MOG_uc003nnj.2_Missense_Mutation_p.L79F|MOG_uc003nnk.2_Missense_Mutation_p.L79F	NM_206809	NP_996532	Q16653	MOG_HUMAN	myelin oligodendrocyte glycoprotein isoform	79	Ig-like V-type.|Extracellular (Potential).				cell adhesion|central nervous system development|positive regulation of MyD88-dependent toll-like receptor signaling pathway	integral to membrane|plasma membrane				ovary(1)	1						GGTGGTTCATCTCTACAGAAA	0.552													15	73					0	0	0.000308642	0	0
C6orf15	29113	broad.mit.edu	37	6	31079934	31079934	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr6:31079934T>C	uc003nsk.1	-	2	202	c.202A>G	c.(202-204)AGG>GGG	p.R68G	PSORS1C1_uc003nsl.1_5'Flank|PSORS1C1_uc010jsj.1_5'Flank	NM_014070	NP_054789	Q6UXA7	CF015_HUMAN	STG protein precursor	68											0						TCATTAGACCTAGGGTCCAGA	0.572													17	59					0	0	0.00121646	0	0
C6orf27	80737	broad.mit.edu	37	6	31744432	31744432	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr6:31744432G>A	uc011dog.1	-	2	363	c.125C>T	c.(124-126)TCC>TTC	p.S42F	C6orf27_uc003nxd.2_5'UTR|C6orf27_uc011doh.1_RNA	NM_025258	NP_079534	Q9Y334	G7C_HUMAN	G7c protein precursor	42						extracellular region				ovary(3)	3						GTGGGTGATGGAGCCAGGGGC	0.652													131	152					0	0	0.000781405	0	0
VARS	7407	broad.mit.edu	37	6	31748310	31748311	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr6:31748310_31748311CC>AA	uc003nxe.2	-	25	3255_3256	c.2832_2833GG>TT	c.(2830-2835)CTGGGT>CTTTGT	p.G945C	VARS_uc003nxf.1_5'Flank	NM_006295	NP_006286	P26640	SYVC_HUMAN	valyl-tRNA synthetase	945					translational elongation|valyl-tRNA aminoacylation	cytosol	ATP binding|protein binding|valine-tRNA ligase activity			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3					L-Valine(DB00161)	TGGCGGTAACCCAGTATCCGGT	0.589													10	395					0	0	6.4e-05	0	0
RDBP	7936	broad.mit.edu	37	6	31921601	31921602	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr6:31921601_31921602CC>AA	uc003nyk.2	-	10	1153_1154	c.949_950GG>TT	c.(949-951)GGG>TTG	p.G317L	RDBP_uc011dot.1_Missense_Mutation_p.G287L|RDBP_uc003nyl.1_Missense_Mutation_p.G257L	NM_002904	NP_002895	P18615	NELFE_HUMAN	RD RNA-binding protein	317	RRM.				positive regulation of viral transcription|regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|viral reproduction	mitochondrion|nucleoplasm	nucleotide binding|protein binding|RNA binding				0						CACCTGGGTCCCGTTGAGCTGA	0.525													9	299					0	0	6.4e-05	0	0
TNXB	7148	broad.mit.edu	37	6	32023668	32023668	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr6:32023668C>T	uc003nzl.2	-	24	8629	c.8427G>A	c.(8425-8427)GAG>GAA	p.E2809E		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	2867	Fibronectin type-III 20.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						CACGCCGCCCCTCGTGGAGGC	0.627													85	150					0	0	0.000781405	0	0
HLA-DRA	3122	broad.mit.edu	37	6	32411081	32411081	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr6:32411081G>A	uc003obh.2	+	3	529	c.448G>A	c.(448-450)GGA>AGA	p.G150R	HLA-DRA_uc003obi.2_Missense_Mutation_p.G125R	NM_019111	NP_061984	P01903	DRA_HUMAN	major histocompatibility complex, class II, DR	150	Ig-like C1-type.|Extracellular (Potential).|Alpha-2.				antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|interferon-gamma-mediated signaling pathway|T cell costimulation|T cell receptor signaling pathway	endoplasmic reticulum membrane|Golgi apparatus|integral to plasma membrane|late endosome membrane|lysosomal membrane|MHC class II protein complex	MHC class II receptor activity			ovary(1)|skin(1)	2						GCTTCGAAATGGAAAACCTGT	0.527									T-cell_Lymphoma_(Cutaneous)__Familial_Clustering_of|Kaposi_Sarcoma_Familial_Clustering_of				29	60					0	0	0.00106085	0	0
BRPF3	27154	broad.mit.edu	37	6	36177996	36177996	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr6:36177996C>T	uc003olv.3	+	6	2094	c.1870C>T	c.(1870-1872)CCA>TCA	p.P624S	BRPF3_uc010jwb.2_Missense_Mutation_p.P624S|BRPF3_uc011dtj.1_RNA|BRPF3_uc010jwc.2_RNA|BRPF3_uc011dtk.1_Missense_Mutation_p.P624S	NM_015695	NP_056510	Q9ULD4	BRPF3_HUMAN	bromodomain and PHD finger containing, 3	624	Bromo.				histone H3 acetylation|platelet activation|platelet degranulation	cytosol|extracellular region|MOZ/MORF histone acetyltransferase complex	protein binding|zinc ion binding			ovary(1)|skin(1)	2						TGTTTAGGTTCCAGATTACCT	0.328													15	29					0	0	0.00244969	0	0
PPIL1	51645	broad.mit.edu	37	6	36823754	36823754	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr6:36823754G>A	uc003omu.2	-	4	588	c.336C>T	c.(334-336)TTC>TTT	p.F112F		NM_016059	NP_057143	Q9Y3C6	PPIL1_HUMAN	peptidylprolyl isomerase-like 1	112	PPIase cyclophilin-type.|Cyclosporin A binding.				protein folding	catalytic step 2 spliceosome	peptidyl-prolyl cis-trans isomerase activity			ovary(1)	1						GGGTCACAAAGAACTGGCTGC	0.532													20	27					0	0	0.00278032	0	0
PI16	221476	broad.mit.edu	37	6	36922685	36922685	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr6:36922685C>T	uc003ona.2	+	1	477	c.149C>T	c.(148-150)ACG>ATG	p.T50M	PI16_uc003omz.1_Missense_Mutation_p.T50M|PI16_uc003onb.2_Missense_Mutation_p.T50M	NM_153370	NP_699201	Q6UXB8	PI16_HUMAN	protease inhibitor 16 precursor	50	Extracellular (Potential).					extracellular region|integral to membrane	peptidase inhibitor activity				0						GTATCCCCGACGGCCTCAGAC	0.597													19	22					0	0	0.00188189	0	0
DNAH8	1769	broad.mit.edu	37	6	38825467	38825467	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr6:38825467C>T	uc003ooe.1	+	40	5856	c.5256C>T	c.(5254-5256)TTC>TTT	p.F1752F		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						GAGTGAAGTTCGAGACTCTAA	0.323													15	39					0	0	0.000958276	0	0
CAPN11	11131	broad.mit.edu	37	6	44144035	44144035	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr6:44144035C>T	uc003owt.1	+	9	999	c.961C>T	c.(961-963)CCC>TCC	p.P321S	CAPN11_uc011dvn.1_5'Flank	NM_007058	NP_008989	Q9UMQ6	CAN11_HUMAN	calpain 11	321	Calpain catalytic.				proteolysis	acrosomal vesicle	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity			ovary(1)|breast(1)	2	all_cancers(18;3.19e-06)|Lung NSC(15;0.00108)|all_lung(25;0.00278)|Hepatocellular(11;0.00908)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)			GGTCCGGAATCCCTGGGGCCG	0.597													13	51					0	0	0.00244969	0	0
GPR116	221395	broad.mit.edu	37	6	46826172	46826172	+	Silent	SNP	A	G	G			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr6:46826172A>G	uc003oyo.3	-	17	3757	c.3468T>C	c.(3466-3468)TAT>TAC	p.Y1156Y	GPR116_uc011dwj.1_Silent_p.Y711Y|GPR116_uc011dwk.1_Silent_p.Y585Y|GPR116_uc003oyp.3_Silent_p.Y1014Y|GPR116_uc003oyq.3_Silent_p.Y1156Y|GPR116_uc010jzi.1_Silent_p.Y828Y	NM_001098518	NP_001091988	Q8IZF2	GP116_HUMAN	G-protein coupled receptor 116 precursor	1156	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(1)|skin(1)	2			Lung(136;0.192)			TCTTCCTCGTATAGACTTCCC	0.562													14	22					0	0	0.00185496	0	0
FAM83B	222584	broad.mit.edu	37	6	54735196	54735196	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr6:54735196G>A	uc003pck.2	+	2	268	c.152G>A	c.(151-153)CGA>CAA	p.R51Q		NM_001010872	NP_001010872	Q5T0W9	FA83B_HUMAN	hypothetical protein LOC222584	51										ovary(6)	6	Lung NSC(77;0.0178)|Renal(3;0.122)					GTCCAGGAACGAGTTTCAGAC	0.383													9	32					0	0	0.000442599	0	0
FAM83B	222584	broad.mit.edu	37	6	54791183	54791183	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr6:54791183G>A	uc003pck.2	+	3	575	c.459G>A	c.(457-459)GTG>GTA	p.V153V		NM_001010872	NP_001010872	Q5T0W9	FA83B_HUMAN	hypothetical protein LOC222584	153										ovary(6)	6	Lung NSC(77;0.0178)|Renal(3;0.122)					TTGCTTTAGTGATGGATATAT	0.313													5	19					0	0	0.00116845	0	0
FAM83B	222584	broad.mit.edu	37	6	54805266	54805266	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr6:54805266C>T	uc003pck.2	+	5	1613	c.1497C>T	c.(1495-1497)TCC>TCT	p.S499S		NM_001010872	NP_001010872	Q5T0W9	FA83B_HUMAN	hypothetical protein LOC222584	499										ovary(6)	6	Lung NSC(77;0.0178)|Renal(3;0.122)					GAATTGAATCCTACTTAAATG	0.408													8	14					0	0	0.000157383	0	0
FAM83B	222584	broad.mit.edu	37	6	54806389	54806389	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr6:54806389G>A	uc003pck.2	+	5	2736	c.2620G>A	c.(2620-2622)GAA>AAA	p.E874K		NM_001010872	NP_001010872	Q5T0W9	FA83B_HUMAN	hypothetical protein LOC222584	874										ovary(6)	6	Lung NSC(77;0.0178)|Renal(3;0.122)					AGGTCCAGTTGAAAGCAAGTT	0.433													5	13					0	0	0.00198382	0	0
HMGCLL1	54511	broad.mit.edu	37	6	55406625	55406625	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr6:55406625G>A	uc003pcn.2	-	4	448	c.289C>T	c.(289-291)CCT>TCT	p.P97S	HMGCLL1_uc003pco.2_Missense_Mutation_p.P67S|HMGCLL1_uc010jzx.2_5'UTR|HMGCLL1_uc011dxc.1_Missense_Mutation_p.P67S|HMGCLL1_uc011dxd.1_Missense_Mutation_p.P67S|HMGCLL1_uc011dxe.1_Missense_Mutation_p.P67S|HMGCLL1_uc003pcp.2_Missense_Mutation_p.P67S	NM_019036	NP_061909	Q8TB92	HMGC2_HUMAN	3-hydroxymethyl-3-methylglutaryl-Coenzyme A	97							hydroxymethylglutaryl-CoA lyase activity|metal ion binding			skin(2)|ovary(1)|pancreas(1)	4	Lung NSC(77;0.0875)		LUSC - Lung squamous cell carcinoma(124;0.23)			ATATCTGTAGGAACTATAACC	0.313													10	22					0	0	0.000442599	0	0
BAI3	577	broad.mit.edu	37	6	70064197	70064197	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr6:70064197C>T	uc003pev.3	+	27	3980	c.3532C>T	c.(3532-3534)CCT>TCT	p.P1178S	BAI3_uc010kak.2_Missense_Mutation_p.P1178S|BAI3_uc011dxx.1_Missense_Mutation_p.P384S	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	1178	Cytoplasmic (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				GAGTTCGTTTCCTAATGGGCA	0.383													18	49					0	0	0.00121646	0	0
COL9A1	1297	broad.mit.edu	37	6	70944502	70944503	+	Missense_Mutation	DNP	GG	AC	AC			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr6:70944502_70944503GG>AC	uc003pfg.3	-	34	2412_2413	c.2253_2254CC>GT	c.(2251-2256)GGCCCT>GGGTCT	p.P752S	COL9A1_uc003pfe.3_Missense_Mutation_p.P301S|COL9A1_uc003pff.3_Missense_Mutation_p.P509S	NM_001851	NP_001842	P20849	CO9A1_HUMAN	alpha 1 type IX collagen isoform 1 precursor	752	Triple-helical region (COL2).				axon guidance|cell adhesion|organ morphogenesis	collagen type IX	metal ion binding			ovary(4)	4						CTCACCGGAGGGCCCTGGACAC	0.619													4	17					0	0	6.4e-05	0	0
B3GAT2	135152	broad.mit.edu	37	6	71571567	71571567	+	Missense_Mutation	SNP	T	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr6:71571567T>A	uc003pfv.2	-	3	1507	c.851A>T	c.(850-852)GAA>GTA	p.E284V	SMAP1_uc003pfr.2_3'UTR|SMAP1_uc003pfs.2_3'UTR|SMAP1_uc010kao.2_3'UTR|SMAP1_uc010kap.2_3'UTR|B3GAT2_uc011dxz.1_RNA|B3GAT2_uc003pfw.2_Missense_Mutation_p.E284V	NM_080742	NP_542780	Q9NPZ5	B3GA2_HUMAN	beta-1,3-glucuronyltransferase 2	284	Lumenal (Potential).				carbohydrate biosynthetic process	Golgi membrane|integral to membrane	galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity|metal ion binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)	3						TTCCAGTTCTTCGACTGTTGT	0.448													15	28					0	0	0.000566183	0	0
FILIP1	27145	broad.mit.edu	37	6	76124461	76124461	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr6:76124461G>A	uc003pia.2	-	2	601	c.228C>T	c.(226-228)TCC>TCT	p.S76S	FILIP1_uc003phy.1_Silent_p.S76S|FILIP1_uc010kbe.2_Silent_p.S79S	NM_015687	NP_056502	Q7Z7B0	FLIP1_HUMAN	filamin A interacting protein 1	76				ELSKEDLIQLLSIMEGE -> AQYAIYIVSRLILLHFL (in Ref. 2; BAA86589).						skin(3)|ovary(1)	4						GGTCTTCTTTGGATAACTCCA	0.408													13	66					0	0	0.000308642	0	0
PRSS35	167681	broad.mit.edu	37	6	84233586	84233586	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr6:84233586C>T	uc003pjz.2	+	2	589	c.426C>T	c.(424-426)TTC>TTT	p.F142F	PRSS35_uc010kbm.2_Silent_p.F142F	NM_153362	NP_699193	Q8N3Z0	PRS35_HUMAN	protease, serine, 35 precursor	142	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			ovary(1)	1		all_cancers(76;0.000113)|Acute lymphoblastic leukemia(125;1.09e-08)|all_hematologic(105;3.12e-05)|all_epithelial(107;0.0575)		BRCA - Breast invasive adenocarcinoma(397;0.0768)		TAACCAATTTCCCTTTCAGCA	0.468													31	29					0	0	0.00283554	0	0
PRSS35	167681	broad.mit.edu	37	6	84234295	84234295	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr6:84234295C>T	uc003pjz.2	+	2	1298	c.1135C>T	c.(1135-1137)CAC>TAC	p.H379Y	PRSS35_uc010kbm.2_Missense_Mutation_p.H379Y	NM_153362	NP_699193	Q8N3Z0	PRS35_HUMAN	protease, serine, 35 precursor	379	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			ovary(1)	1		all_cancers(76;0.000113)|Acute lymphoblastic leukemia(125;1.09e-08)|all_hematologic(105;3.12e-05)|all_epithelial(107;0.0575)		BRCA - Breast invasive adenocarcinoma(397;0.0768)		GGTGGATGTCCACGGGGTTCA	0.512													22	11					0	0	0.000878237	0	0
BACH2	60468	broad.mit.edu	37	6	90660964	90660964	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr6:90660964C>G	uc011eab.1	-	7	1670	c.861G>C	c.(859-861)GAG>GAC	p.E287D	BACH2_uc003pnw.2_Missense_Mutation_p.E287D|BACH2_uc010kch.2_Missense_Mutation_p.E287D	NM_021813	NP_068585	Q9BYV9	BACH2_HUMAN	BTB and CNC homology 1, basic leucine zipper	287						nucleus	protein dimerization activity|sequence-specific DNA binding			ovary(3)|pancreas(1)|lung(1)|skin(1)	6		all_cancers(76;7.37e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.0063)		BRCA - Breast invasive adenocarcinoma(108;0.0799)		GCGTGATGCTCTCTTCCTCAT	0.592													16	29					0	0	0.000958276	0	0
ASCC3	10973	broad.mit.edu	37	6	100957860	100957860	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr6:100957860G>A	uc003pqk.2	-	41	6738	c.6409C>T	c.(6409-6411)CGA>TGA	p.R2137*		NM_006828	NP_006819	Q8N3C0	HELC1_HUMAN	activating signal cointegrator 1 complex subunit	2137	SEC63 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|microtubule cytoskeleton	ATP binding|ATP-dependent helicase activity|nucleic acid binding			ovary(5)|skin(1)	6		all_cancers(76;1.45e-07)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(87;0.00149)|Hepatocellular(1;0.0893)|Colorectal(196;0.13)		BRCA - Breast invasive adenocarcinoma(108;0.0539)|all cancers(137;0.103)|GBM - Glioblastoma multiforme(226;0.199)		TGATGATTTCGAATATATCCT	0.318													72	82					0	0	0.000781405	0	0
DSE	29940	broad.mit.edu	37	6	116756873	116756873	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr6:116756873C>T	uc003pws.2	+	6	1436	c.1242C>T	c.(1240-1242)TTC>TTT	p.F414F	DSE_uc011ebg.1_Silent_p.F433F|DSE_uc003pwt.2_Silent_p.F414F|DSE_uc003pwu.2_Silent_p.F81F	NM_001080976	NP_001074445	Q9UL01	DSE_HUMAN	dermatan sulfate epimerase precursor	414					dermatan sulfate biosynthetic process	endoplasmic reticulum|Golgi apparatus|integral to membrane	chondroitin-glucuronate 5-epimerase activity			ovary(1)	1		all_cancers(87;0.00019)|all_epithelial(87;0.000416)|Ovarian(999;0.133)|Colorectal(196;0.234)		Epithelial(106;0.00915)|OV - Ovarian serous cystadenocarcinoma(136;0.0149)|GBM - Glioblastoma multiforme(226;0.0189)|all cancers(137;0.0262)		ATAGATCTTTCCTTTCCTTCA	0.418													7	20					0	0	0.000157383	0	0
ZUFSP	221302	broad.mit.edu	37	6	116973221	116973222	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr6:116973221_116973222GG>AA	uc003pxf.1	-	6	1341_1342	c.1095_1096CC>TT	c.(1093-1098)TTCCAA>TTTTAA	p.Q366*	ZUFSP_uc010kef.1_Nonsense_Mutation_p.Q170*	NM_145062	NP_659499	Q96AP4	ZUFSP_HUMAN	zinc finger with UFM1-specific peptidase domain	366						intracellular	zinc ion binding			skin(1)	1				GBM - Glioblastoma multiforme(226;0.0258)|all cancers(137;0.0368)|OV - Ovarian serous cystadenocarcinoma(136;0.0464)|Epithelial(106;0.186)		AGTAGCATTTGGAAATTTCTGT	0.381													24	78					0	0	6.4e-05	0	0
GPRC6A	222545	broad.mit.edu	37	6	117113513	117113513	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr6:117113513G>A	uc003pxj.1	-	6	2595	c.2573C>T	c.(2572-2574)TCC>TTC	p.S858F	GPRC6A_uc003pxk.1_Missense_Mutation_p.S683F|GPRC6A_uc003pxl.1_Missense_Mutation_p.S787F	NM_148963	NP_683766	Q5T6X5	GPC6A_HUMAN	G protein-coupled receptor, family C, group 6,	858	Cytoplasmic (Potential).				response to amino acid stimulus		G-protein coupled receptor activity			ovary(4)|skin(2)	6		all_cancers(87;0.0314)|all_epithelial(87;0.0216)|Colorectal(196;0.234)		GBM - Glioblastoma multiforme(226;0.0265)|all cancers(137;0.0554)|OV - Ovarian serous cystadenocarcinoma(136;0.07)		CACACTATGGGAAGAATAACT	0.443													6	19					0	0	0.00116845	0	0
VGLL2	245806	broad.mit.edu	37	6	117589530	117589530	+	Silent	SNP	T	C	C			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr6:117589530T>C	uc003pxn.2	+	2	457	c.267T>C	c.(265-267)ACT>ACC	p.T89T	VGLL2_uc003pxo.2_Silent_p.T89T	NM_182645	NP_872586	Q8N8G2	VGLL2_HUMAN	vestigial-like 2 isoform 1	89					transcription, DNA-dependent	nucleus				central_nervous_system(1)	1				GBM - Glioblastoma multiforme(226;0.0254)|all cancers(137;0.0676)|OV - Ovarian serous cystadenocarcinoma(136;0.0757)		TCCTCTTCACTTATTTCCAGG	0.562													40	64					0	0	0.00111076	0	0
FAM184A	79632	broad.mit.edu	37	6	119327615	119327615	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr6:119327615C>T	uc003pyj.2	-	7	2160	c.1812G>A	c.(1810-1812)GTG>GTA	p.V604V	FAM184A_uc003pyk.3_Silent_p.V484V|FAM184A_uc003pyl.3_Silent_p.V484V	NM_024581	NP_078857	Q8NB25	F184A_HUMAN	hypothetical protein LOC79632 isoform 1	604	Potential.									ovary(2)|central_nervous_system(2)|skin(2)|pancreas(1)	7						AAATTACCTCCACATTTAATA	0.368													7	60					0	0	0.000274275	0	0
GJA1	2697	broad.mit.edu	37	6	121768150	121768150	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr6:121768150C>T	uc003pyr.2	+	2	407	c.157C>T	c.(157-159)CGT>TGT	p.R53C	GJA1_uc011ebo.1_5'UTR|GJA1_uc011ebp.1_5'UTR	NM_000165	NP_000156	P17302	CXA1_HUMAN	connexin 43	53	Extracellular (Potential).				cell-cell signaling|cellular membrane organization|gap junction assembly|heart development|muscle contraction|positive regulation of I-kappaB kinase/NF-kappaB cascade	connexon complex|Golgi-associated vesicle membrane|integral to plasma membrane|membrane raft	ion transmembrane transporter activity|signal transducer activity			ovary(2)	2				GBM - Glioblastoma multiforme(226;0.00252)	Carvedilol(DB01136)	GTCTGCCTTTCGTTGTAACAC	0.502													11	51					0	0	0.00136819	0	0
PKIB	5570	broad.mit.edu	37	6	123039007	123039008	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr6:123039007_123039008GG>AA	uc003pyz.2	+	6	529_530	c.68_69GG>AA	c.(67-69)AGG>AAA	p.R23K	PKIB_uc003pza.2_Missense_Mutation_p.R23K|PKIB_uc003pzb.2_Missense_Mutation_p.R23K|PKIB_uc003pzc.2_Missense_Mutation_p.R30K|PKIB_uc011ebq.1_Missense_Mutation_p.R23K	NM_181794	NP_861459	Q9C010	IPKB_HUMAN	cAMP-dependent protein kinase inhibitor beta	23		Important for inhibition (By similarity).					cAMP-dependent protein kinase inhibitor activity				0				GBM - Glioblastoma multiforme(226;0.164)		TCTTCAGCAAGGGCAGGCCGCC	0.5													10	48					0	0	6.4e-05	0	0
C6orf174	387104	broad.mit.edu	37	6	127797247	127797247	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr6:127797247G>A	uc003qbd.2	-	6	2789	c.1924C>T	c.(1924-1926)CTG>TTG	p.L642L	C6orf174_uc003qbc.2_5'Flank	NM_001012279	NP_001012279	Q5TF21	CF174_HUMAN	hypothetical protein LOC387104 precursor	642	Potential.					integral to membrane				breast(3)|ovary(2)|skin(1)	6				GBM - Glioblastoma multiforme(226;0.026)|all cancers(137;0.161)		AGCTCCGACAGGGATTCGCTC	0.642													23	73					0	0	0.00188189	0	0
PTPRK	5796	broad.mit.edu	37	6	128388688	128388688	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr6:128388688G>A	uc003qbk.2	-	12	2500	c.2133C>T	c.(2131-2133)TTC>TTT	p.F711F	PTPRK_uc003qbj.2_Silent_p.F711F|PTPRK_uc010kfc.2_Silent_p.F711F|PTPRK_uc011ebu.1_Silent_p.F711F|PTPRK_uc003qbl.1_Silent_p.F581F|PTPRK_uc011ebv.1_Silent_p.F711F	NM_002844	NP_002835	Q15262	PTPRK_HUMAN	protein tyrosine phosphatase, receptor type, K	711	Extracellular (Potential).				cell migration|cellular response to reactive oxygen species|cellular response to UV|focal adhesion assembly|negative regulation of cell cycle|negative regulation of cell migration|negative regulation of keratinocyte proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transforming growth factor beta receptor signaling pathway	adherens junction|cell surface|cell-cell junction|integral to plasma membrane|leading edge membrane	beta-catenin binding|gamma-catenin binding|protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|skin(2)|pancreas(1)|kidney(1)|central_nervous_system(1)	8				all cancers(137;0.0118)|GBM - Glioblastoma multiforme(226;0.0372)|OV - Ovarian serous cystadenocarcinoma(136;0.24)		TCATCGCCTGGAAATAGATGT	0.488													10	7					0	0	0.000442599	0	0
LAMA2	3908	broad.mit.edu	37	6	129636636	129636636	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr6:129636636G>A	uc003qbn.2	+	25	3676	c.3571G>A	c.(3571-3573)GAG>AAG	p.E1191K	LAMA2_uc003qbo.2_Missense_Mutation_p.E1191K	NM_000426	NP_000417	P24043	LAMA2_HUMAN	laminin alpha 2 subunit isoform a precursor	1191	Laminin IV type A 2.				cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|breast(1)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		TCTGAAGGCTGAGCAGACCAT	0.463													30	33					0	0	0.000814825	0	0
L3MBTL3	84456	broad.mit.edu	37	6	130370510	130370510	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr6:130370510C>T	uc003qbt.2	+	4	356	c.186C>T	c.(184-186)ACC>ACT	p.T62T	L3MBTL3_uc003qbu.2_Silent_p.T62T	NM_032438	NP_115814	Q96JM7	LMBL3_HUMAN	l(3)mbt-like 3 isoform a	62					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				ovary(5)|skin(1)	6				GBM - Glioblastoma multiforme(226;0.0266)|OV - Ovarian serous cystadenocarcinoma(155;0.154)		CTGCTACCACCACTTGGATGG	0.363													5	14					0	0	0.000602214	0	0
SLC2A12	154091	broad.mit.edu	37	6	134350529	134350529	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr6:134350529G>A	uc003qem.1	-	2	605	c.434C>T	c.(433-435)TCC>TTC	p.S145F		NM_145176	NP_660159	Q8TD20	GTR12_HUMAN	solute carrier family 2 (facilitated glucose	145	Helical; (Potential).					endomembrane system|integral to membrane|perinuclear region of cytoplasm|plasma membrane	D-glucose transmembrane transporter activity			ovary(1)	1	Breast(56;0.214)|Colorectal(23;0.221)			OV - Ovarian serous cystadenocarcinoma(155;0.0101)|GBM - Glioblastoma multiforme(68;0.0123)		GGAAGAGAGGGAGATGGAGAC	0.488													13	36					0	0	0.00244969	0	0
SGK1	6446	broad.mit.edu	37	6	134494411	134494412	+	Splice_Site	DNP	CC	TT	TT			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr6:134494411_134494412CC>TT	uc003qen.3	-	5	506	c.417_splice	c.e5+1	p.E139_splice	SGK1_uc003qeo.3_Splice_Site_p.E234_splice|SGK1_uc011ect.1_Splice_Site_p.E129_splice|SGK1_uc011ecu.1_Splice_Site_p.E139_splice|SGK1_uc011ecv.1_Splice_Site_p.E153_splice|SGK1_uc011ecw.1_Splice_Site_p.E167_splice	NM_005627	NP_005618	O00141	SGK1_HUMAN	serum/glucocorticoid regulated kinase 1 isoform						apoptosis|response to stress|sodium ion transport	endoplasmic reticulum|nucleus|plasma membrane	ATP binding|protein binding|protein serine/threonine kinase activity			skin(3)|stomach(1)|lung(1)|central_nervous_system(1)	6	Colorectal(23;0.221)			OV - Ovarian serous cystadenocarcinoma(155;0.00317)|GBM - Glioblastoma multiforme(68;0.00847)		ACATCTCATACCTCTTTCTTTT	0.396													11	50					0	0	6.4e-05	0	0
BCLAF1	9774	broad.mit.edu	37	6	136589404	136589404	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr6:136589404C>T	uc003qgx.1	-	10	2546	c.2293G>A	c.(2293-2295)GAA>AAA	p.E765K	BCLAF1_uc011edb.1_Missense_Mutation_p.E93K|BCLAF1_uc003qgw.1_Missense_Mutation_p.E592K|BCLAF1_uc003qgy.1_Missense_Mutation_p.E763K|BCLAF1_uc011edc.1_RNA|BCLAF1_uc011edd.1_RNA|BCLAF1_uc011ede.1_Missense_Mutation_p.E763K	NM_014739	NP_055554	Q9NYF8	BCLF1_HUMAN	BCL2-associated transcription factor 1 isoform	765					induction of apoptosis|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|protein binding			ovary(1)	1	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00226)|OV - Ovarian serous cystadenocarcinoma(155;0.00331)		TCCTTTTCTTCTCGAGAACTG	0.383													5	19					0	0	0.000602214	0	0
MAP3K5	4217	broad.mit.edu	37	6	136958507	136958507	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr6:136958507C>T	uc003qhc.2	-	14	2333	c.1972G>A	c.(1972-1974)GGG>AGG	p.G658R	MAP3K5_uc011edj.1_5'UTR|MAP3K5_uc011edk.1_Missense_Mutation_p.G503R	NM_005923	NP_005914	Q99683	M3K5_HUMAN	mitogen-activated protein kinase kinase kinase	658					activation of JUN kinase activity|activation of MAPKK activity|cellular response to hydrogen peroxide|induction of apoptosis by extracellular signals|interspecies interaction between organisms		ATP binding|caspase activator activity|magnesium ion binding|MAP kinase kinase kinase activity|protein homodimerization activity|protein phosphatase binding			ovary(2)|skin(2)|lung(1)	5	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00137)|OV - Ovarian serous cystadenocarcinoma(155;0.00569)		GTGCTTCTCCCCTTCTCTTCG	0.373													7	37					0	0	0.000274275	0	0
C6orf72	116254	broad.mit.edu	37	6	149901026	149901026	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr6:149901026C>T	uc003qmq.1	+	5	513	c.486C>T	c.(484-486)CTC>CTT	p.L162L	C6orf72_uc010kie.1_Silent_p.L42L	NM_138785	NP_620140	Q9NU53	CF072_HUMAN	hypothetical protein LOC116254 precursor	162	Extracellular (Potential).					integral to membrane					0		Ovarian(120;0.0907)		OV - Ovarian serous cystadenocarcinoma(155;9.66e-12)|GBM - Glioblastoma multiforme(68;0.171)		GGGGAGTACTCAGACATTCAA	0.343													31	40					0	0	0.00209593	0	0
ARID1B	57492	broad.mit.edu	37	6	157521929	157521929	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr6:157521929C>T	uc003qqn.2	+	18	4299	c.4147C>T	c.(4147-4149)CAG>TAG	p.Q1383*	ARID1B_uc003qqo.2_Nonsense_Mutation_p.Q1343*|ARID1B_uc003qqp.2_Nonsense_Mutation_p.Q1330*	NM_017519	NP_059989	Q8NFD5	ARI1B_HUMAN	AT rich interactive domain 1B (SWI1-like)	1388					chromatin-mediated maintenance of transcription|nervous system development|transcription, DNA-dependent	SWI/SNF complex	DNA binding|protein binding|transcription coactivator activity			ovary(1)|breast(1)	2		Breast(66;0.000162)|Ovarian(120;0.0265)		OV - Ovarian serous cystadenocarcinoma(65;3.19e-17)|BRCA - Breast invasive adenocarcinoma(81;1.01e-05)		CAGCCAGCAGCAGGAGATGTA	0.597													27	42					0	0	0.000720815	0	0
TCP10L2	401285	broad.mit.edu	37	6	167592605	167592606	+	Missense_Mutation	DNP	TT	GA	GA			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr6:167592605_167592606TT>GA	uc010kkp.2	+	6	895_896	c.764_765TT>GA	c.(763-765)GTT>GGA	p.V255G		NM_001145121	NP_001138593	B9ZVM9	B9ZVM9_HUMAN	t-complex 10-like 2	255											0						GCAGCCGGAGTTGCTGGTGAGC	0.579													3	17					0	0	6.4e-05	0	0
PRKAR1B	5575	broad.mit.edu	37	7	720311	720311	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr7:720311G>A	uc003siu.1	-	4	336	c.230C>T	c.(229-231)TCC>TTC	p.S77F	PRKAR1B_uc003siv.2_Missense_Mutation_p.S77F|PRKAR1B_uc003siw.1_Missense_Mutation_p.S77F	NM_002735	NP_002726	P31321	KAP1_HUMAN	protein kinase, cAMP-dependent, regulatory, type	77	Dimerization and phosphorylation.				activation of phospholipase C activity|activation of protein kinase A activity|blood coagulation|cellular response to glucagon stimulus|energy reserve metabolic process|nerve growth factor receptor signaling pathway|protein phosphorylation|regulation of insulin secretion|transmembrane transport|water transport	cAMP-dependent protein kinase complex|cytosol	cAMP binding|cAMP-dependent protein kinase regulator activity				0		Ovarian(82;0.0779)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0181)|Epithelial(4;5.75e-19)|OV - Ovarian serous cystadenocarcinoma(56;2.01e-18)|all cancers(6;3.96e-16)|BRCA - Breast invasive adenocarcinoma(126;0.152)		CTCATCATGGGAGTCCGACTG	0.602													31	53					0	0	0.00058488	0	0
SDK1	221935	broad.mit.edu	37	7	4056981	4056981	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr7:4056981G>A	uc003smx.2	+	17	2738	c.2599G>A	c.(2599-2601)GGA>AGA	p.G867R	SDK1_uc010kso.2_Missense_Mutation_p.G143R	NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	867					cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		CACCTTGCAGGGAGGTAAGCT	0.537													14	20					0	0	0.00244969	0	0
FOXK1	221937	broad.mit.edu	37	7	4794141	4794141	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr7:4794141C>T	uc003snc.1	+	3	808	c.798C>T	c.(796-798)TAC>TAT	p.Y266Y	FOXK1_uc003sna.1_Silent_p.Y103Y|FOXK1_uc003snb.1_Silent_p.Y266Y	NM_001037165	NP_001032242	P85037	FOXK1_HUMAN	forkhead box K1	266					cell differentiation|embryo development|muscle organ development|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|magnesium ion binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			upper_aerodigestive_tract(1)|skin(1)	2		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.101)|OV - Ovarian serous cystadenocarcinoma(56;7.43e-15)		CCTCCAGTTACCGCTTTGTGC	0.622													14	43					0	0	0.00121646	0	0
WIPI2	26100	broad.mit.edu	37	7	5262246	5262246	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr7:5262246G>A	uc003snv.2	+	8	899	c.683G>A	c.(682-684)AGG>AAG	p.R228K	WIPI2_uc003snw.2_Missense_Mutation_p.R228K|WIPI2_uc003snx.2_Missense_Mutation_p.R210K|WIPI2_uc003sny.2_Missense_Mutation_p.R210K|WIPI2_uc010ksv.2_Missense_Mutation_p.R84K|WIPI2_uc003soa.2_Missense_Mutation_p.R169K|WIPI2_uc003sob.2_5'UTR	NM_015610	NP_056425	Q9Y4P8	WIPI2_HUMAN	WD repeat domain, phosphoinositide interacting 2	228	WD 1.				autophagic vacuole assembly	cytosol|PAS complex|pre-autophagosomal structure membrane	phosphatidylinositol-3,5-bisphosphate binding|phosphatidylinositol-3-phosphate binding			ovary(2)	2		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0925)|OV - Ovarian serous cystadenocarcinoma(56;2.59e-14)		ACCGTGATTAGGGTATTTTCC	0.418													117	271					0	0	0.000781405	0	0
THSD7A	221981	broad.mit.edu	37	7	11676525	11676525	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr7:11676525C>T	uc003ssf.3	-	2	506	c.254G>A	c.(253-255)TGG>TAG	p.W85*		NM_015204	NP_056019	Q9UPZ6	THS7A_HUMAN	thrombospondin, type I, domain containing 7A	85	TSP type-1 1.|Extracellular (Potential).					integral to membrane				ovary(3)	3				UCEC - Uterine corpus endometrioid carcinoma (126;0.163)		ATGAGCACACCACACAGCCCT	0.478										HNSCC(18;0.044)			34	105					0	0	0.00222228	0	0
MIR1183	100302122	broad.mit.edu	37	7	21510691	21510691	+	RNA	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr7:21510691G>A	hsa-mir-1183|MI0006276	+			c.16G>A			SP4_uc003sva.2_Intron|SP4_uc003svb.2_Intron																	0						tcaaatgctcggagacacaga	0.179													40	54					0	0	0.000781405	0	0
DNAH11	8701	broad.mit.edu	37	7	21856288	21856288	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr7:21856288G>A	uc003svc.2	+	65	10588	c.10557G>A	c.(10555-10557)ATG>ATA	p.M3519I		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	3519	AAA 5 (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						AGTATGGAATGGACCTGAAAG	0.458									Kartagener_syndrome				13	13					0	0	0.00136819	0	0
RAPGEF5	9771	broad.mit.edu	37	7	22202112	22202112	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr7:22202112G>A	uc003svg.2	-	13	1185	c.872C>T	c.(871-873)CCG>CTG	p.P291L	RAPGEF5_uc011jyl.1_5'UTR	NM_012294	NP_036426	Q92565	RPGF5_HUMAN	Rap guanine nucleotide exchange factor (GEF) 5	141	N-terminal Ras-GEF.				nervous system development|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	nucleus	GTP-dependent protein binding|Rap guanyl-nucleotide exchange factor activity			ovary(1)	1						TTTCCTACGCGGAACGTCTGA	0.343													24	52					0	0	0.00047179	0	0
CLK2P	1197	broad.mit.edu	37	7	23624933	23624933	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr7:23624933C>T	uc003swk.2	-	1	1214	c.564G>A	c.(562-564)CGG>CGA	p.R188R		NR_002711				SubName: Full=cDNA FLJ61616, highly similar to Dual specificity protein kinase CLK2 (EC 2.7.12.1); SubName: Full=CDC-like kinase 2, isoform CRA_c; SubName: Full=Putative uncharacterized protein CLK2;												0						CCAGGCGACCCCGGTAAAAAT	0.512													42	99					0	0	0.000680045	0	0
GHRHR	2692	broad.mit.edu	37	7	31016059	31016059	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr7:31016059G>A	uc003tbx.2	+	11	1038	c.990G>A	c.(988-990)TCG>TCA	p.S330S	GHRHR_uc003tby.2_Silent_p.S266S|GHRHR_uc003tbz.2_Missense_Mutation_p.D97N	NM_000823	NP_000814	Q02643	GHRHR_HUMAN	growth hormone releasing hormone receptor	330	Helical; Name=6; (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|positive regulation of cAMP biosynthetic process|positive regulation of cell proliferation|positive regulation of growth hormone secretion|positive regulation of insulin-like growth factor receptor signaling pathway|positive regulation of multicellular organism growth|response to estrogen stimulus|response to glucocorticoid stimulus	cell surface|integral to membrane|nuclear inner membrane|nuclear matrix|nuclear outer membrane|plasma membrane|stored secretory granule	growth factor binding|growth hormone-releasing hormone receptor activity|peptide hormone binding			ovary(2)|lung(1)|breast(1)|large_intestine(1)	5					Sermorelin(DB00010)	TCTCCAAGTCGACACTTTTCC	0.468													17	38					0	0	0.000958276	0	0
CCDC129	223075	broad.mit.edu	37	7	31611731	31611731	+	Silent	SNP	T	C	C			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr7:31611731T>C	uc003tcj.1	+	6	1317	c.324T>C	c.(322-324)TTT>TTC	p.F108F	CCDC129_uc011kad.1_Silent_p.F118F|CCDC129_uc003tci.1_Silent_p.F107F|CCDC129_uc011kae.1_Silent_p.F134F|CCDC129_uc003tck.1_Silent_p.F16F	NM_194300	NP_919276	Q6ZRS4	CC129_HUMAN	coiled-coil domain containing 129	108											0						TGCATCAGTTTTCAGAAACTC	0.408													8	9					0	0	0.000673444	0	0
NPSR1	387129	broad.mit.edu	37	7	34888270	34888270	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr7:34888270C>T	uc003teg.1	+	8	1148	c.1020C>T	c.(1018-1020)CCC>CCT	p.P340P	AAA1_uc010kwq.1_Intron|AAA1_uc011kaq.1_Intron|NPSR1_uc003teh.1_Silent_p.P340P|NPSR1_uc010kwt.1_Silent_p.P187P|NPSR1_uc010kwu.1_Silent_p.P130P|NPSR1_uc010kwv.1_Silent_p.P274P|NPSR1_uc003tei.1_Silent_p.P340P|NPSR1_uc010kww.1_Silent_p.P329P|NPSR1_uc011kar.1_Silent_p.P274P	NM_207172	NP_997055	Q6W5P4	NPSR1_HUMAN	G protein-coupled receptor for asthma	340	Cytoplasmic (Potential).					cytoplasm|integral to membrane|plasma membrane	vasopressin receptor activity			skin(3)|pancreas(1)	4					Halothane(DB01159)	TCTCTTTCCCCTGCAGGTAAG	0.512													43	90					0	0	0.000680045	0	0
GPR141	353345	broad.mit.edu	37	7	37780209	37780209	+	Missense_Mutation	SNP	C	T	T	rs150971296	by1000genomes	TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr7:37780209C>T	uc003tfm.1	+	1	214	c.214C>T	c.(214-216)CGC>TGC	p.R72C	uc003tfl.2_Intron	NM_181791	NP_861456	Q7Z602	GP141_HUMAN	G protein-coupled receptor 141	72	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)	3						AGTGCCATTTCGCTTGACCTA	0.493													9	13					0	0	0.000274275	0	0
TARP	445347	broad.mit.edu	37	7	38305071	38305071	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr7:38305071C>T	uc003tge.1	-	5	1013	c.636G>A	c.(634-636)ATG>ATA	p.M212I	uc003tfz.1_Intron|TARP_uc003tgb.2_Missense_Mutation_p.M8I|TARP_uc003tgc.1_Missense_Mutation_p.M8I|TARP_uc003tgd.1_Missense_Mutation_p.M8I|TARP_uc010kxi.1_RNA|TARP_uc003tgf.1_RNA|TARP_uc003tgj.1_RNA|TARP_uc003tgh.1_RNA|TARP_uc003tgi.1_RNA|TARP_uc003tgg.1_RNA			A2JGV3	A2JGV3_HUMAN	Homo sapiens TCRgamma alternate reading frame protein (TCRg) mRNA, complete cds.	Error:Variant_position_missing_in_A2JGV3_after_alignment											0						AGCTAAATTTCATGTATGTGT	0.393													48	95					0	0	0.000781405	0	0
VPS41	27072	broad.mit.edu	37	7	38869877	38869878	+	Missense_Mutation	DNP	CC	AA	AA	rs142066348		TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr7:38869877_38869878CC>AA	uc003tgy.2	-	5	323_324	c.297_298GG>TT	c.(295-300)ATGGGT>ATTTGT	p.99_100MG>IC	VPS41_uc003tgz.2_Intron|VPS41_uc010kxn.2_Missense_Mutation_p.99_100MG>IC	NM_014396	NP_055211	P49754	VPS41_HUMAN	vacuolar protein sorting 41 isoform 1	99_100					Golgi vesicle transport|intracellular protein transport|vesicle-mediated transport	cytosol|Golgi-associated vesicle|HOPS complex|membrane fraction	zinc ion binding			skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	4						GAACACACACCCATGTGCTCTC	0.426													11	549					0	0	6.4e-05	0	0
INHBA	3624	broad.mit.edu	37	7	41729961	41729961	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr7:41729961C>T	uc003thq.2	-	2	803	c.568G>A	c.(568-570)GAA>AAA	p.E190K	INHBA_uc003thr.2_Missense_Mutation_p.E190K	NM_002192	NP_002183	P08476	INHBA_HUMAN	inhibin beta A precursor	190					cell cycle arrest|cell surface receptor linked signaling pathway|defense response|erythrocyte differentiation|eyelid development in camera-type eye|G1/S transition of mitotic cell cycle|growth|hair follicle development|hemoglobin biosynthetic process|hemopoietic progenitor cell differentiation|induction of apoptosis|male gonad development|negative regulation of B cell differentiation|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of follicle-stimulating hormone secretion|negative regulation of interferon-gamma biosynthetic process|negative regulation of macrophage differentiation|negative regulation of phosphorylation|nervous system development|odontogenesis|ovarian follicle development|palate development|positive regulation of erythrocyte differentiation|positive regulation of follicle-stimulating hormone secretion|positive regulation of ovulation|positive regulation of transcription from RNA polymerase II promoter|progesterone secretion|regulation of activin receptor signaling pathway	activin A complex|inhibin A complex	cytokine activity|follistatin binding|growth factor activity|hormone activity|identical protein binding|signal transducer activity			lung(5)|ovary(1)	6						TCGGCCTCTTCCCCTGTGTCC	0.567										TSP Lung(11;0.080)			29	42					0	0	0.001512	0	0
INHBA	3624	broad.mit.edu	37	7	41730026	41730026	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr7:41730026C>T	uc003thq.2	-	2	738	c.503G>A	c.(502-504)AGG>AAG	p.R168K	INHBA_uc003thr.2_Missense_Mutation_p.R168K	NM_002192	NP_002183	P08476	INHBA_HUMAN	inhibin beta A precursor	168					cell cycle arrest|cell surface receptor linked signaling pathway|defense response|erythrocyte differentiation|eyelid development in camera-type eye|G1/S transition of mitotic cell cycle|growth|hair follicle development|hemoglobin biosynthetic process|hemopoietic progenitor cell differentiation|induction of apoptosis|male gonad development|negative regulation of B cell differentiation|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of follicle-stimulating hormone secretion|negative regulation of interferon-gamma biosynthetic process|negative regulation of macrophage differentiation|negative regulation of phosphorylation|nervous system development|odontogenesis|ovarian follicle development|palate development|positive regulation of erythrocyte differentiation|positive regulation of follicle-stimulating hormone secretion|positive regulation of ovulation|positive regulation of transcription from RNA polymerase II promoter|progesterone secretion|regulation of activin receptor signaling pathway	activin A complex|inhibin A complex	cytokine activity|follistatin binding|growth factor activity|hormone activity|identical protein binding|signal transducer activity			lung(5)|ovary(1)	6						GACTTTGGTCCTGGTCCTGTT	0.587										TSP Lung(11;0.080)			33	65					0	0	0.00128727	0	0
TBRG4	9238	broad.mit.edu	37	7	45145054	45145054	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr7:45145054G>A	uc003tmv.2	-	3	847	c.721C>T	c.(721-723)CGC>TGC	p.R241C	TBRG4_uc003tmu.2_Missense_Mutation_p.R66C|TBRG4_uc003tmw.2_Missense_Mutation_p.R241C|TBRG4_uc003tmx.2_Missense_Mutation_p.R241C|TBRG4_uc011kcd.1_Missense_Mutation_p.R252C|SNORA5A_uc003tmy.2_5'Flank|SNORA5C_uc003tmz.1_5'Flank	NM_004749	NP_004740	Q969Z0	TBRG4_HUMAN	cell cycle progression 2 protein isoform 1	241					apoptosis|cell cycle arrest|cellular respiration|G1 phase of mitotic cell cycle|positive regulation of cell proliferation	mitochondrion	ATP binding|protein binding|protein kinase activity				0						TCTTCCAGGCGGTTCATTAGT	0.557													31	84					0	0	0.00178596	0	0
TNS3	64759	broad.mit.edu	37	7	47409130	47409131	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr7:47409130_47409131GG>AA	uc003tnv.2	-	17	1479_1480	c.1112_1113CC>TT	c.(1111-1113)CCC>CTT	p.P371L	TNS3_uc003tnw.2_Missense_Mutation_p.P371L	NM_022748	NP_073585	Q68CZ2	TENS3_HUMAN	tensin 3	371						focal adhesion	protein binding			ovary(4)	4						GGATTGCCTGGGGGCCACCTGG	0.614													15	39					0	0	6.4e-05	0	0
DDC	1644	broad.mit.edu	37	7	50605614	50605614	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr7:50605614C>T	uc003tpf.3	-	4	465	c.379G>A	c.(379-381)GAA>AAA	p.E127K	DDC_uc010kza.2_Intron|DDC_uc003tpg.3_Missense_Mutation_p.E127K	NM_000790	NP_000781	P20711	DDC_HUMAN	dopa decarboxylase (aromatic L-amino acid	127	2.|2 X approximate tandem repeats.				cellular amino acid metabolic process|hormone biosynthetic process|neurotransmitter secretion	cytosol	aromatic-L-amino-acid decarboxylase activity|protein binding|pyridoxal phosphate binding			ovary(2)	2	Glioma(55;0.08)|all_neural(89;0.245)				Amantadine(DB00915)|Carbidopa(DB00190)|Flupenthixol(DB00875)|L-Tryptophan(DB00150)|Levodopa(DB01235)|Pimozide(DB01100)|Pyridoxal Phosphate(DB00114)|Remoxipride(DB00409)	TTTGGTAGTTCCAGCATCTTC	0.567													11	66					0	0	0.000673444	0	0
POM121L12	285877	broad.mit.edu	37	7	53103569	53103569	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr7:53103569G>A	uc003tpz.2	+	1	221	c.205G>A	c.(205-207)GGG>AGG	p.G69R		NM_182595	NP_872401	Q8N7R1	P1L12_HUMAN	POM121 membrane glycoprotein-like 12	69											0						CTTCCAGTGGGGGCGCCCGGT	0.706													15	38					0	0	0.000958276	0	0
POM121L12	285877	broad.mit.edu	37	7	53103759	53103759	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr7:53103759G>A	uc003tpz.2	+	1	411	c.395G>A	c.(394-396)CGG>CAG	p.R132Q		NM_182595	NP_872401	Q8N7R1	P1L12_HUMAN	POM121 membrane glycoprotein-like 12	132											0						AACCCAGGACGGACCTGGAGC	0.607													14	30					0	0	0.000566183	0	0
ZNF713	349075	broad.mit.edu	37	7	56007333	56007333	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr7:56007333C>T	uc003trc.1	+	4	965	c.927C>T	c.(925-927)GCC>GCT	p.A309A	ZNF713_uc003tra.1_Silent_p.A322A|MRPS17_uc003trb.2_Intron	NM_182633	NP_872439	Q8N859	ZN713_HUMAN	zinc finger protein 713	309	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2	Breast(14;0.214)		Lung(13;0.00024)|LUSC - Lung squamous cell carcinoma(13;0.00099)			GTGGGAAAGCCTTCCGTCAGC	0.393													42	87					0	0	0.00195071	0	0
PHKG1	5260	broad.mit.edu	37	7	56149880	56149880	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr7:56149880G>A	uc003trz.1	-	7	809	c.614C>T	c.(613-615)CCG>CTG	p.P205L	PSPH_uc003trj.2_Intron|PHKG1_uc003try.1_Missense_Mutation_p.P99L|PHKG1_uc011kdb.1_Missense_Mutation_p.P237L|PHKG1_uc011kdc.1_Missense_Mutation_p.P196L|PHKG1_uc011kdd.1_Missense_Mutation_p.P151L	NM_006213	NP_006204	Q16816	PHKG1_HUMAN	phosphorylase kinase gamma subunit 1	205	Protein kinase.				glucose metabolic process|glycogen biosynthetic process|glycogen catabolic process	cytosol	ATP binding|calmodulin binding|phosphorylase kinase activity			large_intestine(1)	1	Breast(14;0.214)		Lung(13;0.00024)|LUSC - Lung squamous cell carcinoma(13;0.00099)			CCCGTAGCCCGGGTGGTCCTC	0.627													25	73					0	0	0.00106085	0	0
TPST1	8460	broad.mit.edu	37	7	65705952	65705952	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr7:65705952C>T	uc003tuw.2	+	2	892	c.540C>T	c.(538-540)CTC>CTT	p.L180L	TPST1_uc010kzy.2_Intron|TPST1_uc010kzz.2_Silent_p.L180L|TPST1_uc010laa.2_Silent_p.L180L	NM_003596	NP_003587	O60507	TPST1_HUMAN	tyrosylprotein sulfotransferase 1	180	Lumenal (Potential).				inflammatory response|peptidyl-tyrosine sulfation	Golgi membrane|integral to membrane|membrane fraction	protein-tyrosine sulfotransferase activity				0						CCAAATTTCTCCTGATGGTCC	0.408													24	37					0	0	0.000586117	0	0
SPDYE7P	441251	broad.mit.edu	37	7	72334711	72334711	+	RNA	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr7:72334711G>A	uc010lal.1	-	1		c.4945C>T				NR_003666				Homo sapiens speedy homolog E7 (Xenopus laevis), pseudogene (SPDYE7P), non-coding RNA.												0						AACTGGAACCGAAGTTTCTGG	0.587													53	87					0	0	0.000781405	0	0
CLIP2	7461	broad.mit.edu	37	7	73800895	73800895	+	Silent	SNP	T	C	C			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr7:73800895T>C	uc003uam.2	+	12	2851	c.2524T>C	c.(2524-2526)TTG>CTG	p.L842L	CLIP2_uc003uan.2_Silent_p.L807L	NM_003388	NP_003379	Q9UDT6	CLIP2_HUMAN	CAP-GLY domain containing linker protein 2	842	Potential.					microtubule associated complex				skin(3)	3						GGTGACAGCCTTGACCTCCCA	0.592													5	39					0	0	0.00198382	0	0
PMS2L11	441263	broad.mit.edu	37	7	76619605	76619605	+	RNA	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr7:76619605C>T	uc003ufw.3	+	2		c.459C>T			PMS2L11_uc011kgn.1_RNA	NR_023383				Homo sapiens cDNA FLJ59034 complete cds, moderately similar to Protein deltex-2.												0						CCCCAGCGGTCCCTCAAGCAG	0.627													10	31					0	0	0.00244969	0	0
PION	54103	broad.mit.edu	37	7	77006211	77006211	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr7:77006211A>G	uc003ugf.2	-	10	774	c.695T>C	c.(694-696)ATC>ACC	p.I232T	PION_uc003ugg.1_Missense_Mutation_p.I17T	NM_017439	NP_059135	A4D1B5	GSAP_HUMAN	pigeon homolog	232					beta-amyloid formation|regulation of proteolysis	trans-Golgi network	beta-amyloid binding			central_nervous_system(1)	1						ACATTTTAAGATACTCCTTGA	0.318													3	85					0	0	6.4e-05	0	0
PHTF2	57157	broad.mit.edu	37	7	77558604	77558604	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr7:77558604C>T	uc003ugs.3	+	11	1424	c.1298C>T	c.(1297-1299)CCA>CTA	p.P433L	PHTF2_uc003ugp.2_Missense_Mutation_p.P395L|PHTF2_uc003ugq.3_Missense_Mutation_p.P395L|PHTF2_uc010ldv.2_Missense_Mutation_p.P395L|PHTF2_uc003ugt.3_Missense_Mutation_p.P399L|PHTF2_uc003ugu.3_Missense_Mutation_p.P395L|PHTF2_uc003ugv.2_Missense_Mutation_p.P258L|PHTF2_uc010ldw.1_Missense_Mutation_p.P258L	NM_001127357	NP_001120829	Q8N3S3	PHTF2_HUMAN	putative homeodomain transcription factor 2	433					regulation of transcription, DNA-dependent|transcription, DNA-dependent	endoplasmic reticulum|nucleus	DNA binding			ovary(1)	1						CAGATTAATCCATGTGTGAAA	0.373													14	16					0	0	0.000308642	0	0
PCLO	27445	broad.mit.edu	37	7	82582120	82582120	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr7:82582120C>T	uc003uhx.2	-	5	8438	c.8149G>A	c.(8149-8151)GAA>AAA	p.E2717K	PCLO_uc003uhv.2_Missense_Mutation_p.E2717K|PCLO_uc010lec.2_5'Flank	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	2648					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TTTCCATCTTCTTTATACTGA	0.373													7	15					0	0	0.00198382	0	0
PCLO	27445	broad.mit.edu	37	7	82784993	82784993	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr7:82784993C>T	uc003uhx.2	-	2	1253	c.964G>A	c.(964-966)GAA>AAA	p.E322K	PCLO_uc003uhv.2_Missense_Mutation_p.E322K	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TGTGATTTTTCATGTCCAGGC	0.547													14	28					0	0	0.00244969	0	0
GRM3	2913	broad.mit.edu	37	7	86416388	86416388	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr7:86416388G>A	uc003uid.2	+	3	2379	c.1280G>A	c.(1279-1281)GGG>GAG	p.G427E	GRM3_uc010lef.2_Missense_Mutation_p.G425E|GRM3_uc010leg.2_Missense_Mutation_p.G299E|GRM3_uc010leh.2_Intron	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	427	Extracellular (Potential).				synaptic transmission	integral to plasma membrane				lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	ATCCTGGATGGGAAGAAGTTG	0.453													60	128					0	0	0.000781405	0	0
GRM3	2913	broad.mit.edu	37	7	86468900	86468900	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr7:86468900C>T	uc003uid.2	+	4	3169	c.2070C>T	c.(2068-2070)TTC>TTT	p.F690F	GRM3_uc010lef.2_Intron|GRM3_uc010leg.2_Silent_p.F562F|GRM3_uc010leh.2_Silent_p.F282F	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	690	Helical; Name=4; (Potential).				synaptic transmission	integral to plasma membrane				lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	CTCAGGTTTTCATCTGCCTGG	0.557													7	26					0	0	0.000157383	0	0
SAMD9	54809	broad.mit.edu	37	7	92731104	92731104	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr7:92731104G>A	uc003umf.2	-	3	4563	c.4307C>T	c.(4306-4308)TCC>TTC	p.S1436F	SAMD9_uc003umg.2_Missense_Mutation_p.S1436F	NM_017654	NP_060124	Q5K651	SAMD9_HUMAN	sterile alpha motif domain containing 9	1436						cytoplasm				ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7	all_cancers(62;5.71e-11)|all_epithelial(64;3.25e-10)|Breast(17;0.000675)|Lung NSC(181;0.0969)|all_lung(186;0.125)		STAD - Stomach adenocarcinoma(171;0.000302)			GAATAAGAGGGAAGCTAGAAA	0.353													35	83					0	0	0.00283554	0	0
SAMD9L	219285	broad.mit.edu	37	7	92764903	92764903	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr7:92764903C>G	uc003umh.1	-	5	1598	c.382G>C	c.(382-384)GAT>CAT	p.D128H	SAMD9L_uc003umj.1_Missense_Mutation_p.D128H|SAMD9L_uc003umi.1_Missense_Mutation_p.D128H|SAMD9L_uc010lfb.1_Missense_Mutation_p.D128H|SAMD9L_uc003umk.1_Missense_Mutation_p.D128H|SAMD9L_uc010lfc.1_Missense_Mutation_p.D128H|SAMD9L_uc010lfd.1_Missense_Mutation_p.D128H|SAMD9L_uc011khx.1_Missense_Mutation_p.D119H	NM_152703	NP_689916	Q8IVG5	SAM9L_HUMAN	sterile alpha motif domain containing 9-like	128										ovary(4)	4	all_cancers(62;4.15e-11)|all_epithelial(64;2.29e-10)|Breast(17;0.000675)|Lung NSC(181;0.0755)|all_lung(186;0.0989)		STAD - Stomach adenocarcinoma(171;0.000302)			TGTTTGATATCTCTGATCTCT	0.323													12	19					0	0	0.000978159	0	0
PPP1R9A	55607	broad.mit.edu	37	7	94540380	94540380	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr7:94540380G>A	uc003unp.2	+	2	1237	c.955G>A	c.(955-957)GAT>AAT	p.D319N	PPP1R9A_uc010lfj.2_Missense_Mutation_p.D319N|PPP1R9A_uc011kif.1_Missense_Mutation_p.D319N|PPP1R9A_uc003unq.2_Missense_Mutation_p.D319N|PPP1R9A_uc011kig.1_Missense_Mutation_p.D319N	NM_017650	NP_060120	Q9ULJ8	NEB1_HUMAN	protein phosphatase 1, regulatory (inhibitor)	319						cell junction|synapse|synaptosome	actin binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4	all_cancers(62;9.12e-11)|all_epithelial(64;4.34e-09)		STAD - Stomach adenocarcinoma(171;0.0031)			CATTGACAAAGATGGTCCTGA	0.468										HNSCC(28;0.073)			19	42					0	0	0.00188189	0	0
DYNC1I1	1780	broad.mit.edu	37	7	95442576	95442576	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr7:95442576C>T	uc003uoc.3	+	4	569	c.292C>T	c.(292-294)CCC>TCC	p.P98S	DYNC1I1_uc003uod.3_Missense_Mutation_p.P81S|DYNC1I1_uc003uob.2_Missense_Mutation_p.P81S|DYNC1I1_uc003uoe.3_Missense_Mutation_p.P98S|DYNC1I1_uc010lfl.2_Missense_Mutation_p.P87S	NM_004411	NP_004402	O14576	DC1I1_HUMAN	dynein, cytoplasmic 1, intermediate chain 1	98	Interaction with DCTN1 (By similarity).				vesicle transport along microtubule	condensed chromosome kinetochore|cytoplasmic dynein complex|microtubule|perinuclear region of cytoplasm|spindle pole|vesicle	microtubule binding|microtubule motor activity			ovary(3)|kidney(1)	4	all_cancers(62;9.39e-10)|all_epithelial(64;2.28e-09)|Lung NSC(181;0.165)|all_lung(186;0.191)		STAD - Stomach adenocarcinoma(171;0.0957)			CCCTATGTCTCCCTCCTCGAA	0.458													13	17					0	0	0.00244969	0	0
C7orf51	222950	broad.mit.edu	37	7	100086605	100086605	+	Nonsense_Mutation	SNP	G	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr7:100086605G>T	uc003uvd.1	+	4	1420	c.1261G>T	c.(1261-1263)GAG>TAG	p.E421*	C7orf51_uc003uve.1_Nonsense_Mutation_p.E203*	NM_173564	NP_775835	Q6ZVC0	CG051_HUMAN	hypothetical protein FLJ37538	421	Pro-rich.									skin(1)	1	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					GCCCCGGGGGGAGCGGGAGCT	0.567													5	7					0.000602214	0.00280424	0.000602214	1	0
LRCH4	4034	broad.mit.edu	37	7	100173606	100173606	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr7:100173606G>A	uc003uvj.2	-	16	1717	c.1664C>T	c.(1663-1665)CCC>CTC	p.P555L	uc003uvh.2_5'Flank|LRCH4_uc010lgz.2_RNA|LRCH4_uc003uvi.2_RNA|LRCH4_uc011kjw.1_Missense_Mutation_p.P82L	NM_002319	NP_002310	O75427	LRCH4_HUMAN	leucine-rich repeats and calponin homology (CH)	555	CH.				nervous system development	PML body	protein binding			large_intestine(1)|ovary(1)	2	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					CTCAGGCAGGGGCCGCTGCAG	0.677													9	17					0	0	0.000274275	0	0
SPDYE6	729597	broad.mit.edu	37	7	101988982	101988983	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr7:101988982_101988983CG>AT	uc011kkp.1	-	6	1311_1312	c.890_891CG>AT	c.(889-891)CCG>CAT	p.P297H	SPDYE6_uc003uzb.2_Missense_Mutation_p.P153H	NM_001146210	NP_001139682	P0CI01	SPDE6_HUMAN	speedy homolog E6	297	Arg-rich.										0						TCCTGGCCCTCGGGTTCATGGA	0.55													9	925					0	0	6.4e-05	0	0
RELN	5649	broad.mit.edu	37	7	103244906	103244906	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr7:103244906C>T	uc003vca.2	-	23	3193	c.3033G>A	c.(3031-3033)TGG>TGA	p.W1011*	RELN_uc010liz.2_Nonsense_Mutation_p.W1011*	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	1011					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		AGCTCTGGCTCCAGCGGAAAC	0.498													10	22					0	0	0.000673444	0	0
MDFIC	29969	broad.mit.edu	37	7	114619726	114619726	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr7:114619726C>T	uc003vhf.2	+	4	973	c.710C>T	c.(709-711)TCT>TTT	p.S237F		NM_199072	NP_951038	Q9P1T7	MDFIC_HUMAN	MyoD family inhibitor domain containing protein	128					activation of JUN kinase activity|interspecies interaction between organisms|negative regulation of protein import into nucleus|negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|positive regulation of viral transcription|regulation of Wnt receptor signaling pathway|transcription, DNA-dependent	cytoplasm|cytoplasm|nucleolus|nucleolus|nucleus	cyclin binding|Tat protein binding			ovary(1)	1						GCACCTGTTTCTCAAAAAATG	0.428													22	38					0	0	0.00278032	0	0
MDFIC	29969	broad.mit.edu	37	7	114619728	114619728	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr7:114619728C>T	uc003vhf.2	+	4	975	c.712C>T	c.(712-714)CAA>TAA	p.Q238*		NM_199072	NP_951038	Q9P1T7	MDFIC_HUMAN	MyoD family inhibitor domain containing protein	129					activation of JUN kinase activity|interspecies interaction between organisms|negative regulation of protein import into nucleus|negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|positive regulation of viral transcription|regulation of Wnt receptor signaling pathway|transcription, DNA-dependent	cytoplasm|cytoplasm|nucleolus|nucleolus|nucleus	cyclin binding|Tat protein binding			ovary(1)	1						ACCTGTTTCTCAAAAAATGCA	0.433													23	42					0	0	0.00047179	0	0
PTPRZ1	5803	broad.mit.edu	37	7	121684490	121684490	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr7:121684490C>T	uc003vjy.2	+	23	6347	c.5952C>T	c.(5950-5952)TTC>TTT	p.F1984F	PTPRZ1_uc003vjz.2_Silent_p.F1117F|PTPRZ1_uc011knt.1_Silent_p.F574F	NM_002851	NP_002842	P23471	PTPRZ_HUMAN	protein tyrosine phosphatase, receptor-type,	1984	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 1.				central nervous system development	integral to plasma membrane	protein binding|protein tyrosine/threonine phosphatase activity|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|large_intestine(2)|lung(2)|central_nervous_system(1)|kidney(1)	9						AATATGTCTTCATTCATGATA	0.393													23	52					0	0	0.00047179	0	0
TAS2R16	50833	broad.mit.edu	37	7	122635553	122635553	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr7:122635553C>T	uc003vkl.1	-	1	202	c.136G>A	c.(136-138)GAC>AAC	p.D46N		NM_016945	NP_058641	Q9NYV7	T2R16_HUMAN	taste receptor T2R16	46	Helical; Name=2; (Potential).				detection of chemical stimulus involved in sensory perception of bitter taste	endoplasmic reticulum|external side of plasma membrane|trans-Golgi network	bitter taste receptor activity|protein binding			ovary(1)|skin(1)	2						AGAATCATGTCCACAGGCATC	0.443													8	13					0	0	0.000442599	0	0
ASB15	142685	broad.mit.edu	37	7	123267276	123267276	+	Missense_Mutation	SNP	T	G	G			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr7:123267276T>G	uc003vku.1	+	9	1102	c.810T>G	c.(808-810)AAT>AAG	p.N270K	ASB15_uc003vkv.1_Missense_Mutation_p.N270K|ASB15_uc003vkw.1_Missense_Mutation_p.N270K	NM_080928	NP_563616	Q8WXK1	ASB15_HUMAN	ankyrin repeat and SOCS box-containing 15	270	ANK 5.				intracellular signal transduction					skin(2)|lung(1)	3						GAAGCGGAAATGTACCTAACC	0.483													12	22					0	0	0.000978159	0	0
METTL2B	55798	broad.mit.edu	37	7	128119274	128119274	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr7:128119274T>C	uc003vnf.2	+	3	302	c.265T>C	c.(265-267)TTT>CTT	p.F89L	METTL2B_uc003vng.2_Missense_Mutation_p.F24L|METTL2B_uc011kop.1_5'UTR	NM_018396	NP_060866	Q6P1Q9	MTL2B_HUMAN	methyltransferase like 2B	89							methyltransferase activity			skin(1)	1						CGAAAATGGGTTTTTCAAGGA	0.358													29	46					0	0	0.001512	0	0
FLNC	2318	broad.mit.edu	37	7	128488671	128488671	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr7:128488671G>A	uc003vnz.3	+	27	4846	c.4637G>A	c.(4636-4638)GGC>GAC	p.G1546D	FLNC_uc003voa.3_Missense_Mutation_p.G1546D	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	1546	Filamin 14.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						CGGGCCAGCGGCCCAGGCCTC	0.627													64	163					0	0	0.000781405	0	0
CPA4	51200	broad.mit.edu	37	7	129950821	129950821	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr7:129950821G>A	uc003vpr.2	+	9	1035	c.988G>A	c.(988-990)GAA>AAA	p.E330K	CPA4_uc011kpd.1_Missense_Mutation_p.E297K|CPA4_uc011kpe.1_Missense_Mutation_p.E226K	NM_016352	NP_057436	Q9UI42	CBPA4_HUMAN	carboxypeptidase A4 preproprotein	330					histone acetylation|proteolysis	extracellular region	metallocarboxypeptidase activity|zinc ion binding			ovary(1)	1	Melanoma(18;0.0435)					AGATGCCGAGGAACTCGTGAG	0.572													51	82					0	0	0.000781405	0	0
SVOPL	136306	broad.mit.edu	37	7	138341226	138341226	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr7:138341226C>T	uc011kqh.1	-	6	501	c.501G>A	c.(499-501)ACG>ACA	p.T167T	SVOPL_uc003vue.2_Silent_p.T15T	NM_001139456	NP_001132928	Q8N434	SVOPL_HUMAN	SVOP-like isoform 1	167						integral to membrane	transmembrane transporter activity				0						CTCGGTATTTCGTGGGCAAAA	0.333													31	93					0	0	0.000953801	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				16	30					0	0	0.000566183	0	0
CLEC5A	23601	broad.mit.edu	37	7	141643715	141643715	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr7:141643715G>A	uc003vwv.1	-	4	386	c.189C>T	c.(187-189)ACC>ACT	p.T63T	CLEC5A_uc011krm.1_Intron|CLEC5A_uc003vww.1_Silent_p.T63T|CLEC5A_uc010lnq.1_Intron|CLEC5A_uc010lnr.1_Intron	NM_013252	NP_037384	Q9NY25	CLC5A_HUMAN	C-type lectin, superfamily member 5	63	Extracellular (Potential).				anti-apoptosis|cellular defense response|innate immune response|interspecies interaction between organisms|osteoblast development	cell surface|integral to plasma membrane	sugar binding|viral receptor activity				0	Melanoma(164;0.0171)					AGCTCCTTGTGGTAATGAAGC	0.418													8	41					0	0	0.000442599	0	0
MGAM	8972	broad.mit.edu	37	7	141752684	141752684	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr7:141752684C>T	uc003vwy.2	+	26	3113	c.3059C>T	c.(3058-3060)TCC>TTC	p.S1020F		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1020	Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	GCTGACATCTCCTTAAAGTCT	0.468													23	56					0	0	0.00278032	0	0
TRPV5	56302	broad.mit.edu	37	7	142606687	142606687	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr7:142606687C>T	uc003wby.1	-	14	2128	c.1864G>A	c.(1864-1866)GAA>AAA	p.E622K		NM_019841	NP_062815	Q9NQA5	TRPV5_HUMAN	transient receptor potential cation channel,	622	Cytoplasmic (Potential).				protein tetramerization	apical plasma membrane|integral to plasma membrane	calcium channel activity			ovary(3)|central_nervous_system(2)|skin(1)	6	Melanoma(164;0.059)					AGCCCGAATTCGCACCCACAG	0.612													30	51					0	0	0.00058488	0	0
OR6V1	346517	broad.mit.edu	37	7	142750017	142750017	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr7:142750017G>A	uc011ksv.1	+	1	580	c.580G>A	c.(580-582)GAA>AAA	p.E194K		NM_001001667	NP_001001667	Q8N148	OR6V1_HUMAN	olfactory receptor, family 6, subfamily V,	194	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	Melanoma(164;0.059)					TCGCCTGTTGGAATTCTGGGA	0.522													80	146					0	0	0.000781405	0	0
TAS2R40	259286	broad.mit.edu	37	7	142919780	142919780	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr7:142919780C>T	uc011ksx.1	+	1	609	c.609C>T	c.(607-609)TTC>TTT	p.F203F		NM_176882	NP_795363	P59535	T2R40_HUMAN	taste receptor, type 2, member 40	203	Helical; Name=5; (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity			ovary(1)	1	Melanoma(164;0.059)					TGGGGATCTTCGTTCCTCTGA	0.502													27	39					0	0	0.00127121	0	0
CLCN1	1180	broad.mit.edu	37	7	143028681	143028681	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr7:143028681C>T	uc003wcr.1	+	10	1189	c.1102C>T	c.(1102-1104)CTG>TTG	p.L368L	CLCN1_uc011ktc.1_Silent_p.L30L	NM_000083	NP_000074	P35523	CLCN1_HUMAN	chloride channel 1, skeletal muscle	368	Helical; (By similarity).				muscle contraction	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Melanoma(164;0.205)					ATTTGTGTATCTGCATCGCCA	0.473													27	65					0	0	0.0024448	0	0
TAS2R60	338398	broad.mit.edu	37	7	143141184	143141184	+	Missense_Mutation	SNP	G	A	A	rs141559059		TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr7:143141184G>A	uc011ktg.1	+	1	639	c.639G>A	c.(637-639)ATG>ATA	p.M213I	uc003wda.2_Intron	NM_177437	NP_803186	P59551	T2R60_HUMAN	taste receptor, type 2, member 60	213	Cytoplasmic (Potential).				sensory perception of bitter taste	integral to membrane	G-protein coupled receptor activity	p.M213I(2)		skin(6)	6	Melanoma(164;0.172)					TCATTTGCATGATTTTGCTCA	0.463													28	57					0	0	0.001512	0	0
TAS2R41	259287	broad.mit.edu	37	7	143175670	143175670	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr7:143175670C>T	uc003wdc.1	+	1	705	c.705C>T	c.(703-705)TCC>TCT	p.S235S	uc003wda.2_Intron	NM_176883	NP_795364	P59536	T2R41_HUMAN	taste receptor, type 2, member 41	235	Helical; Name=6; (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity			pancreas(1)|skin(1)	2	Melanoma(164;0.15)					CTCTGAAGTCCCTCATCTCCT	0.498													31	65					0	0	0.0024448	0	0
OR6B1	135946	broad.mit.edu	37	7	143701774	143701774	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr7:143701774C>T	uc003wdt.1	+	1	685	c.685C>T	c.(685-687)CCC>TCC	p.P229S		NM_001005281	NP_001005281	O95007	OR6B1_HUMAN	olfactory receptor, family 6, subfamily B,	229	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	Melanoma(164;0.0783)					ATTATGCATGCCCACAGGAAA	0.463													49	109					0	0	0.000781405	0	0
CNTNAP2	26047	broad.mit.edu	37	7	146818228	146818228	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr7:146818228G>A	uc003weu.1	+	6	1428	c.912G>A	c.(910-912)GAG>GAA	p.E304E		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	304	Laminin G-like 1.|Extracellular (Potential).				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			CCAATGGAGAGTTTGACTACC	0.463										HNSCC(39;0.1)			11	36					0	0	0.00136819	0	0
ZNF777	27153	broad.mit.edu	37	7	149152758	149152758	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr7:149152758G>A	uc003wfv.2	-	2	519	c.356C>T	c.(355-357)TCC>TTC	p.S119F		NM_015694	NP_056509	Q9ULD5	ZN777_HUMAN	zinc finger protein 777	119					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1	Melanoma(164;0.165)		OV - Ovarian serous cystadenocarcinoma(82;0.00358)			GGGGGAGTGGGAGAGAAGGGA	0.607													50	108					0	0	0.000781405	0	0
RARRES2	5919	broad.mit.edu	37	7	150037578	150037578	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr7:150037578G>A	uc003wha.2	-	2	238	c.121C>T	c.(121-123)CCG>TCG	p.P41S	RARRES2_uc010lpp.1_Missense_Mutation_p.P41S	NM_002889	NP_002880	Q99969	RARR2_HUMAN	chemerin preproprotein	41					embryonic digestive tract development|in utero embryonic development|positive regulation of macrophage chemotaxis|retinoid metabolic process	extracellular matrix	receptor binding	p.P41P(1)		pancreas(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.011)			TGCACGGGCGGGTGCTTGTGA	0.706													10	12					0	0	0.000673444	0	0
GIMAP8	155038	broad.mit.edu	37	7	150174259	150174259	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr7:150174259C>T	uc003whj.2	+	5	1719	c.1389C>T	c.(1387-1389)GTC>GTT	p.V463V		NM_175571	NP_783161	Q8ND71	GIMA8_HUMAN	GTPase, IMAP family member 8	463						endoplasmic reticulum|Golgi apparatus|mitochondrion	GTP binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7			OV - Ovarian serous cystadenocarcinoma(82;0.0218)	UCEC - Uterine corpus endometrioid carcinoma (81;0.17)		GGAGCCTCGTCTTCACCTCTC	0.592													37	60					0	0	0.000953801	0	0
GIMAP8	155038	broad.mit.edu	37	7	150174528	150174528	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr7:150174528G>A	uc003whj.2	+	5	1988	c.1658G>A	c.(1657-1659)GGA>GAA	p.G553E		NM_175571	NP_783161	Q8ND71	GIMA8_HUMAN	GTPase, IMAP family member 8	553						endoplasmic reticulum|Golgi apparatus|mitochondrion	GTP binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7			OV - Ovarian serous cystadenocarcinoma(82;0.0218)	UCEC - Uterine corpus endometrioid carcinoma (81;0.17)		GCCATCTTTGGAGCAGACTTT	0.483													23	73					0	0	0.000878237	0	0
GIMAP4	55303	broad.mit.edu	37	7	150269327	150269327	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr7:150269327C>T	uc003whl.2	+	3	251	c.169C>T	c.(169-171)CAT>TAT	p.H57Y	GIMAP4_uc011kuu.1_5'UTR|GIMAP4_uc011kuv.1_Missense_Mutation_p.H71Y	NM_018326	NP_060796	Q9NUV9	GIMA4_HUMAN	GTPase, IMAP family member 4	57							GTP binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.0179)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GAAAGTGTTTCATTCTGGCAC	0.458													17	38					0	0	0.00074312	0	0
GIMAP2	26157	broad.mit.edu	37	7	150389532	150389532	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr7:150389532G>A	uc003who.2	+	3	246	c.158G>A	c.(157-159)GGT>GAT	p.G53D	GIMAP1_uc003whp.2_Intron	NM_015660	NP_056475	Q9UG22	GIMA2_HUMAN	GTPase, IMAP family member 2	53						integral to membrane	GTP binding			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		TCGAAGCTGGGTTCCCAGACC	0.463													19	36					0	0	0.00121646	0	0
ABP1	26	broad.mit.edu	37	7	150558186	150558186	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr7:150558186C>T	uc003why.1	+	6	6363	c.2145C>T	c.(2143-2145)ATC>ATT	p.I715I	ABP1_uc003whz.1_Silent_p.I715I|ABP1_uc003wia.1_Silent_p.I734I	NM_001091	NP_001082	P19801	ABP1_HUMAN	amiloride binding protein 1 precursor	715					amine metabolic process	extracellular space|peroxisome	copper ion binding|diamine oxidase activity|heparin binding|histamine oxidase activity|methylputrescine oxidase activity|primary amine oxidase activity|propane-1,3-diamine oxidase activity|quinone binding			ovary(2)|breast(2)|skin(2)	6	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	Amiloride(DB00594)|Spermine(DB00127)	ACACTGTGATCGTGTGGCCTC	0.597													19	39					0	0	0.00074312	0	0
ACCN3	9311	broad.mit.edu	37	7	150746353	150746353	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr7:150746353C>T	uc003win.2	+	1	749	c.381C>T	c.(379-381)CGC>CGT	p.R127R	ACCN3_uc003wio.2_Silent_p.R127R|ACCN3_uc003wip.2_Silent_p.R127R|ACCN3_uc003wiq.2_RNA	NM_004769	NP_004760	Q9UHC3	ACCN3_HUMAN	amiloride-sensitive cation channel 3 isoform a	127	Extracellular (Potential).				sensory perception|signal transduction	cytoplasm|integral to plasma membrane	ligand-gated sodium channel activity			ovary(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CCTTCCTGCGCGCCCTGGGCC	0.697													20	38					0	0	0.00121646	0	0
RHEB	6009	broad.mit.edu	37	7	151168657	151168657	+	Silent	SNP	A	G	G			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr7:151168657A>G	uc003wkh.1	-	5	723	c.310T>C	c.(310-312)TTG>CTG	p.L104L		NM_005614	NP_005605	Q15382	RHEB_HUMAN	Ras homolog enriched in brain precursor	104					cell cycle arrest|insulin receptor signaling pathway|positive regulation of TOR signaling cascade|small GTPase mediated signal transduction	cytosol|plasma membrane	GTP binding|GTPase activity|metal ion binding|protein binding			large_intestine(1)|lung(1)	2			OV - Ovarian serous cystadenocarcinoma(82;0.00306)	UCEC - Uterine corpus endometrioid carcinoma (81;0.174)		ACCATATCCAACAATTTGCCA	0.289													40	93					0	0	0.00195071	0	0
PRKAG2	51422	broad.mit.edu	37	7	151372661	151372661	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr7:151372661G>A	uc003wkk.2	-	4	1140	c.529C>T	c.(529-531)CTG>TTG	p.L177L	PRKAG2_uc011kvl.1_Silent_p.L53L|PRKAG2_uc003wkj.2_Silent_p.L133L|PRKAG2_uc010lqe.1_RNA|PRKAG2_uc003wkm.1_Silent_p.L177L	NM_016203	NP_057287	Q9UGJ0	AAKG2_HUMAN	AMP-activated protein kinase gamma2 subunit	177					ATP biosynthetic process|carnitine shuttle|cell cycle arrest|fatty acid biosynthetic process|glycogen metabolic process|insulin receptor signaling pathway|intracellular protein kinase cascade|positive regulation of peptidyl-threonine phosphorylation|positive regulation of protein kinase activity|regulation of fatty acid biosynthetic process|regulation of fatty acid oxidation|regulation of glucose import|regulation of glycolysis|sterol biosynthetic process	AMP-activated protein kinase complex|cytosol|nucleoplasm	ADP binding|ATP binding|cAMP-dependent protein kinase inhibitor activity|cAMP-dependent protein kinase regulator activity|phosphorylase kinase regulator activity|protein kinase activator activity|protein kinase binding			breast(1)|kidney(1)	2	all_neural(206;0.187)	all_hematologic(28;0.0605)	OV - Ovarian serous cystadenocarcinoma(82;0.00252)	UCEC - Uterine corpus endometrioid carcinoma (81;0.185)		TAGGATTCCAGGGGAAACGTG	0.587													36	97					0	0	0.00148497	0	0
CSMD1	64478	broad.mit.edu	37	8	2876166	2876166	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr8:2876166G>A	uc011kwk.1	-	52	8255	c.7865C>T	c.(7864-7866)TCG>TTG	p.S2622L	CSMD1_uc011kwj.1_Missense_Mutation_p.S1951L|CSMD1_uc010lrg.2_Intron	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	2622	Extracellular (Potential).|Sushi 17.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		GCTTCCACACGAGATAACTAG	0.353													38	57					0	0	0.00222228	0	0
CSMD1	64478	broad.mit.edu	37	8	2910111	2910111	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr8:2910111G>A	uc011kwk.1	-	50	7926	c.7536C>T	c.(7534-7536)TTC>TTT	p.F2512F	CSMD1_uc011kwj.1_Silent_p.F1841F|CSMD1_uc010lrg.2_Silent_p.F580F	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	2512	Extracellular (Potential).|Sushi 15.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		TGTCCAAAGTGAACTCGTTCC	0.448													4	9					0	0	0.00116845	0	0
CSMD1	64478	broad.mit.edu	37	8	3443717	3443717	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr8:3443717G>A	uc011kwk.1	-	9	1556	c.1166C>T	c.(1165-1167)ACC>ATC	p.T389I		NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	389	Extracellular (Potential).|Sushi 2.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		TCTCTGACAGGTGATGCTTTT	0.468													6	10					0	0	0.000157383	0	0
CSMD1	64478	broad.mit.edu	37	8	3889468	3889468	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr8:3889468C>T	uc011kwk.1	-	4	959	c.569G>A	c.(568-570)GGA>GAA	p.G190E		NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	190	Extracellular (Potential).|Sushi 1.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		TGCACCATTTCCTGGGCTGAC	0.557													24	27					0	0	0.000720815	0	0
DEFB4A	1673	broad.mit.edu	37	8	7752252	7752252	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr8:7752252C>T	uc003wsd.2	+	1	54	c.18C>T	c.(16-18)CTC>CTT	p.L6L		NM_004942	NP_004933	O15263	DFB4A_HUMAN	defensin, beta 4 precursor	6					chemotaxis|defense response to bacterium|G-protein coupled receptor protein signaling pathway|immune response	extracellular region					0						TCTTGTATCTCCTCTTCTCGT	0.527													19	107					0	0	0.000878237	0	0
BLK	640	broad.mit.edu	37	8	11400850	11400850	+	Silent	SNP	G	C	C			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr8:11400850G>C	uc003wty.2	+	2	698	c.117G>C	c.(115-117)CCG>CCC	p.P39P	BLK_uc003wtz.2_Intron	NM_001715	NP_001706	P51451	BLK_HUMAN	B lymphoid tyrosine kinase	39					intracellular protein kinase cascade|positive regulation of insulin secretion		ATP binding|non-membrane spanning protein tyrosine kinase activity			large_intestine(1)|stomach(1)|ovary(1)	3			STAD - Stomach adenocarcinoma(15;0.00391)	COAD - Colon adenocarcinoma(149;0.207)		CGCCACTGCCGCCCCTGGTGA	0.393													10	25					0	0	0.000673444	0	0
USP17L2	377630	broad.mit.edu	37	8	11995377	11995377	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr8:11995377G>A	uc003wvc.1	-	1	893	c.893C>T	c.(892-894)CCT>CTT	p.P298L	FAM66D_uc011kxp.1_Intron|FAM66D_uc011kxo.1_Intron	NM_201402	NP_958804	Q6R6M4	U17L2_HUMAN	deubiquitinating enzyme 3	298					apoptosis|cell cycle|G2/M transition checkpoint|mitotic cell cycle G1/S transition checkpoint|protein deubiquitination|ubiquitin-dependent protein catabolic process	nucleus	ubiquitin thiolesterase activity|ubiquitin-specific protease activity			skin(2)|upper_aerodigestive_tract(1)	3						AAGGCACTCAGGATATTGCAC	0.483													12	153					0	0	0.00185496	0	0
DOK2	9046	broad.mit.edu	37	8	21768240	21768240	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr8:21768240C>T	uc003wzy.1	-	4	655	c.562G>A	c.(562-564)GGG>AGG	p.G188R	DOK2_uc003wzx.1_Missense_Mutation_p.G188R|DOK2_uc003wzz.1_Missense_Mutation_p.G34R|DOK2_uc010lth.1_Missense_Mutation_p.G34R	NM_003974	NP_003965	O60496	DOK2_HUMAN	docking protein 2	188	IRS-type PTB.				blood coagulation|leukocyte migration	cytosol	identical protein binding|insulin receptor binding				0				Colorectal(74;0.0145)|COAD - Colon adenocarcinoma(73;0.0608)		AGCTGGGTCCCTGGCTCGGGC	0.632													18	26					0	0	0.00152264	0	0
BMP1	649	broad.mit.edu	37	8	22052249	22052249	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr8:22052249G>A	uc003xbg.2	+	12	1700	c.1456G>A	c.(1456-1458)GAC>AAC	p.D486N	BMP1_uc003xba.2_Missense_Mutation_p.D486N|BMP1_uc003xbb.2_Missense_Mutation_p.D486N|BMP1_uc003xbe.2_RNA|BMP1_uc003xbc.2_Missense_Mutation_p.D235N|BMP1_uc003xbd.2_RNA|BMP1_uc003xbf.2_Missense_Mutation_p.D235N|BMP1_uc011kzc.1_Missense_Mutation_p.D235N|BMP1_uc003xbh.2_RNA|BMP1_uc003xbi.2_RNA	NM_006129	NP_006120	P13497	BMP1_HUMAN	bone morphogenetic protein 1 isoform 3	486	CUB 2.				cartilage condensation|cell differentiation|lipid metabolic process|lipoprotein metabolic process|ossification|positive regulation of cartilage development|proteolysis	extracellular space	calcium ion binding|cytokine activity|growth factor activity|metalloendopeptidase activity|zinc ion binding			ovary(2)|breast(1)	3				Colorectal(74;0.00229)|COAD - Colon adenocarcinoma(73;0.0661)|READ - Rectum adenocarcinoma(644;0.11)		TGAGCGCCACGACAGCTGTGC	0.612													13	31					0	0	0.00185496	0	0
LOXL2	4017	broad.mit.edu	37	8	23217632	23217632	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr8:23217632A>G	uc003xdh.1	-	3	841	c.502T>C	c.(502-504)TTT>CTT	p.F168L	uc003xdj.2_Intron	NM_002318	NP_002309	Q9Y4K0	LOXL2_HUMAN	lysyl oxidase-like 2 precursor	168					aging|cell adhesion|protein modification process	extracellular space|membrane	copper ion binding|electron carrier activity|oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor|scavenger receptor activity			breast(2)|ovary(1)	3		Prostate(55;0.0453)|Breast(100;0.143)		Colorectal(74;0.0288)|COAD - Colon adenocarcinoma(73;0.096)		GAATTGTCAAATTTGAACCCA	0.488													29	53					0	0	0.00209593	0	0
ADAM28	10863	broad.mit.edu	37	8	24181473	24181473	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr8:24181473G>T	uc003xdy.2	+	9	930	c.847G>T	c.(847-849)GTT>TTT	p.V283F	ADAM28_uc003xdx.2_Missense_Mutation_p.V283F|ADAM28_uc011kzz.1_Missense_Mutation_p.V50F|ADAM28_uc011laa.1_RNA|ADAM28_uc010lua.2_5'Flank	NM_014265	NP_055080	Q9UKQ2	ADA28_HUMAN	ADAM metallopeptidase domain 28 isoform 1	283	Peptidase M12B.|Extracellular (Potential).				proteolysis|spermatogenesis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|lung(1)|central_nervous_system(1)	5		Prostate(55;0.0959)		Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0434)|BRCA - Breast invasive adenocarcinoma(99;0.175)		GAGGGGGAGTGTTCTCTCAAG	0.403													3	7					2.56e-06	1.19916e-05	0.00024832	1	0
NEFM	4741	broad.mit.edu	37	8	24775886	24775886	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr8:24775886G>A	uc003xed.3	+	3	2551	c.2518G>A	c.(2518-2520)GAT>AAT	p.D840N	NEFM_uc011lac.1_Missense_Mutation_p.D622N|NEFM_uc010lue.2_Missense_Mutation_p.D464N	NM_005382	NP_005373	P07197	NFM_HUMAN	neurofilament, medium polypeptide 150kDa isoform	840	Tail.					neurofilament	protein binding|structural constituent of cytoskeleton			breast(1)	1		Prostate(55;0.157)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0197)|Epithelial(17;2.44e-10)|Colorectal(74;0.0108)|COAD - Colon adenocarcinoma(73;0.0375)		GAGCCCAGCAGATGAAAAGAA	0.328													23	36					0	0	0.000720815	0	0
EBF2	64641	broad.mit.edu	37	8	25708156	25708156	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr8:25708156G>A	uc003xes.1	-	15	1667	c.1650C>T	c.(1648-1650)GGC>GGT	p.G550G	PPP2R2A_uc003xek.2_Intron|EBF2_uc010lug.1_RNA	NM_022659	NP_073150	Q9HAK2	COE2_HUMAN	early B-cell factor 2	550					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|metal ion binding			ovary(3)|skin(1)	4		all_cancers(63;0.0989)|Ovarian(32;2.74e-05)|all_epithelial(46;0.0608)|Prostate(55;0.0845)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0277)|Epithelial(17;3.29e-10)|Colorectal(74;0.00383)|COAD - Colon adenocarcinoma(73;0.00738)		GTGAAGGGGAGCCTTGGGGCC	0.507													14	52					0	0	0.000566183	0	0
C8orf80	389643	broad.mit.edu	37	8	27898672	27898672	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr8:27898672C>T	uc003xgm.3	-	13	1650	c.1507G>A	c.(1507-1509)GAG>AAG	p.E503K		NM_001010906	NP_001010906	Q68CJ6	SLIP_HUMAN	speckled-like pattern in the germinal center	503						nucleus	GTP binding|GTPase activity			ovary(1)|central_nervous_system(1)	2		Ovarian(32;0.0218)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0228)|KIRC - Kidney renal clear cell carcinoma(542;0.126)|Kidney(114;0.15)|Colorectal(74;0.181)		ATGGCCTTCTCCAGCAGCTCA	0.557													4	12					0	0	0.000602214	0	0
HMBOX1	79618	broad.mit.edu	37	8	28908624	28908624	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr8:28908624C>T	uc003xhd.3	+	10	1557	c.1215C>T	c.(1213-1215)GCC>GCT	p.A405A	HMBOX1_uc003xhc.3_Intron|HMBOX1_uc010lve.2_RNA|HMBOX1_uc003xhe.2_Silent_p.A405A|HMBOX1_uc011lay.1_Silent_p.A428A|HMBOX1_uc003xhf.2_Silent_p.A391A|HMBOX1_uc003xhg.2_3'UTR	NM_001135726	NP_001129198	Q6NT76	HMBX1_HUMAN	homeobox containing 1	405					negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent	cytoplasm|nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		Ovarian(32;0.0192)		KIRC - Kidney renal clear cell carcinoma(542;0.135)|Kidney(114;0.161)		TGGCATTGGCCCGACAAGGAG	0.483													15	41					0	0	0.000422831	0	0
ADAM32	203102	broad.mit.edu	37	8	39103614	39103614	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr8:39103614C>T	uc003xmt.3	+	17	2076	c.1831C>T	c.(1831-1833)CGT>TGT	p.R611C	ADAM32_uc011lch.1_Missense_Mutation_p.R512C|ADAM32_uc003xmu.3_Missense_Mutation_p.R505C|ADAM32_uc003xmv.2_Missense_Mutation_p.R35C	NM_145004	NP_659441	Q8TC27	ADA32_HUMAN	a disintegrin and metalloprotease domain 32	611	Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			ovary(1)|lung(1)|kidney(1)	3		all_cancers(7;3e-05)|all_lung(54;0.00187)|Hepatocellular(245;0.00745)|Lung NSC(58;0.00771)|Breast(189;0.0503)	LUSC - Lung squamous cell carcinoma(45;6.2e-07)|Colorectal(1;0.00699)|READ - Rectum adenocarcinoma(1;0.146)			TTGTGTAAATCGTGAATGTGT	0.343													13	40					0	0	0.000308642	0	0
ADAM18	8749	broad.mit.edu	37	8	39467040	39467040	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr8:39467040C>T	uc003xni.2	+	5	304	c.304C>T	c.(304-306)CCA>TCA	p.P102S	ADAM18_uc003xnh.2_Missense_Mutation_p.P102S|ADAM18_uc010lww.2_RNA|ADAM18_uc010lwx.2_Missense_Mutation_p.P102S	NM_014237	NP_055052	Q9Y3Q7	ADA18_HUMAN	a disintegrin and metalloprotease domain 18	102					cell differentiation|multicellular organismal development|proteolysis|spermatogenesis	integral to membrane|membrane fraction	metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)|kidney(1)|skin(1)	6		all_cancers(7;1.32e-05)|all_epithelial(6;3.08e-10)|all_lung(54;0.00187)|Hepatocellular(245;0.00745)|Lung NSC(58;0.00769)|Breast(189;0.0112)	LUSC - Lung squamous cell carcinoma(45;0.000199)			TGCCGAATTTCCAAATTCATT	0.318													6	16					0	0	0.00198382	0	0
ADAM2	2515	broad.mit.edu	37	8	39627009	39627009	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr8:39627009G>A	uc003xnj.2	-	12	1189	c.1114C>T	c.(1114-1116)CAC>TAC	p.H372Y	ADAM2_uc003xnk.2_Missense_Mutation_p.H353Y|ADAM2_uc011lck.1_Missense_Mutation_p.H372Y|ADAM2_uc003xnl.2_Missense_Mutation_p.H246Y	NM_001464	NP_001455	Q99965	ADAM2_HUMAN	ADAM metallopeptidase domain 2 proprotein	372	Extracellular (Potential).|Peptidase M12B.				cell adhesion|fusion of sperm to egg plasma membrane|proteolysis	integral to plasma membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|lung(1)	2		all_cancers(7;2.38e-28)|all_epithelial(6;8.85e-21)|all_lung(54;1.24e-07)|Lung NSC(58;1.94e-07)|Hepatocellular(245;0.00745)|Breast(189;0.00908)|Renal(179;0.0183)|Colorectal(162;0.246)	LUSC - Lung squamous cell carcinoma(45;0.000149)	READ - Rectum adenocarcinoma(644;0.0689)|Kidney(114;0.162)		GGCTGATTGTGAAGACACTGG	0.433													13	24					0	0	0.00244969	0	0
IDO2	169355	broad.mit.edu	37	8	39840243	39840243	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr8:39840243C>T	uc010lwy.1	+	5	669	c.427C>T	c.(427-429)CAC>TAC	p.H143Y	IDO2_uc003xno.1_RNA|IDO2_uc010lwz.1_Intron	NM_194294	NP_919270	Q6ZQW0	I23O2_HUMAN	indoleamine-pyrrole 2,3 dioxygenase-like 1	130					tryptophan catabolic process to kynurenine	cytosol	heme binding|indoleamine 2,3-dioxygenase activity|tryptophan 2,3-dioxygenase activity			ovary(2)	2						TATCCTGGTCCACTCAGACTT	0.478													10	17					0	0	0.00185496	0	0
IDO2	169355	broad.mit.edu	37	8	39845389	39845389	+	Splice_Site	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr8:39845389G>A	uc010lwy.1	+	7	731	c.489_splice	c.e7-1	p.G163_splice	IDO2_uc003xno.1_Splice_Site|IDO2_uc010lwz.1_Intron|IDO2_uc003xnp.1_5'UTR	NM_194294	NP_919270	Q6ZQW0	I23O2_HUMAN	indoleamine-pyrrole 2,3 dioxygenase-like 1						tryptophan catabolic process to kynurenine	cytosol	heme binding|indoleamine 2,3-dioxygenase activity|tryptophan 2,3-dioxygenase activity			ovary(2)	2						TCCTTCCCAAGGAACCTGGAG	0.507													6	12					0	0	0.00116845	0	0
IDO2	169355	broad.mit.edu	37	8	39862883	39862883	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr8:39862883G>A	uc010lwy.1	+	9	986	c.744G>A	c.(742-744)CGG>CGA	p.R248R	IDO2_uc003xno.1_Intron|IDO2_uc010lwz.1_Intron|IDO2_uc003xnp.1_Intron	NM_194294	NP_919270	Q6ZQW0	I23O2_HUMAN	indoleamine-pyrrole 2,3 dioxygenase-like 1	235					tryptophan catabolic process to kynurenine	cytosol	heme binding|indoleamine 2,3-dioxygenase activity|tryptophan 2,3-dioxygenase activity			ovary(2)	2						CAGGCATCCGGATCTTTCTCT	0.398													9	30					0	0	0.000978159	0	0
RP1	6101	broad.mit.edu	37	8	55541018	55541018	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr8:55541018G>A	uc003xsd.1	+	4	4724	c.4576G>A	c.(4576-4578)GAA>AAA	p.E1526K	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	1526					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			TATAATTTATGAAATAATCAG	0.318													10	48					0	0	0.000442599	0	0
RP1	6101	broad.mit.edu	37	8	55541288	55541288	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr8:55541288G>A	uc003xsd.1	+	4	4994	c.4846G>A	c.(4846-4848)GAA>AAA	p.E1616K	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	1616					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			TGACAGTGGCGAACTTACCCA	0.398													28	60					0	0	0.00106085	0	0
XKR4	114786	broad.mit.edu	37	8	56270245	56270245	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr8:56270245C>T	uc003xsf.2	+	2	846	c.814C>T	c.(814-816)CAC>TAC	p.H272Y		NM_052898	NP_443130	Q5GH76	XKR4_HUMAN	XK, Kell blood group complex subunit-related	272						integral to membrane				pancreas(2)	2			Epithelial(17;0.000117)|all cancers(17;0.000836)			TAGATATTTCCACACAATATA	0.383													13	16					0	0	0.00185496	0	0
CLVS1	157807	broad.mit.edu	37	8	62370891	62370891	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr8:62370891A>G	uc003xuh.2	+	5	1091	c.767A>G	c.(766-768)AAC>AGC	p.N256S	CLVS1_uc003xui.2_RNA|CLVS1_uc010lyp.2_Intron	NM_173519	NP_775790	Q8IUQ0	CLVS1_HUMAN	retinaldehyde binding protein 1-like 1	256	CRAL-TRIO.				lysosome organization	clathrin-coated vesicle|early endosome membrane|trans-Golgi network	phosphatidylinositol-3,5-bisphosphate binding|transporter activity			skin(4)|ovary(1)	5						AACAATTTAAACAGCCTTCAC	0.383													33	89					0	0	0.00170553	0	0
BHLHE22	27319	broad.mit.edu	37	8	65494421	65494421	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr8:65494421C>T	uc003xvi.2	+	1	1608	c.1074C>T	c.(1072-1074)TCC>TCT	p.S358S	LOC401463_uc003xvh.2_5'UTR	NM_152414	NP_689627	Q8NFJ8	BHE22_HUMAN	basic helix-loop-helix domain containing, class	358					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0						CGGCTGCCTCCTGCCCGGAGA	0.667													7	14					0	0	0.000157383	0	0
EYA1	2138	broad.mit.edu	37	8	72211462	72211462	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr8:72211462G>A	uc003xys.3	-	8	933	c.646C>T	c.(646-648)CCG>TCG	p.P216S	EYA1_uc003xyr.3_Missense_Mutation_p.P211S|EYA1_uc003xyt.3_Missense_Mutation_p.P183S|EYA1_uc010lzf.2_Missense_Mutation_p.P143S|EYA1_uc003xyu.2_Missense_Mutation_p.P216S|EYA1_uc011lfe.1_Missense_Mutation_p.P210S|EYA1_uc003xyv.2_Missense_Mutation_p.P94S	NM_172058	NP_742055	Q99502	EYA1_HUMAN	eyes absent 1 isoform b	216					double-strand break repair|histone dephosphorylation|positive regulation of DNA repair|protein sumoylation|regulation of transcription, DNA-dependent|response to ionizing radiation|sensory perception of sound|transcription, DNA-dependent	cytoplasm|nucleus	metal ion binding|protein tyrosine phosphatase activity			ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	5	Breast(64;0.046)		Epithelial(68;0.0837)|all cancers(69;0.247)			GGATAAGACGGATAGTCCTAC	0.428													14	28					0	0	0.000422831	0	0
KCNB2	9312	broad.mit.edu	37	8	73848543	73848543	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr8:73848543C>T	uc003xzb.2	+	3	1541	c.953C>T	c.(952-954)TCG>TTG	p.S318L		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	318	Helical; Voltage-sensor; Name=Segment S4; (Potential).				regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			skin(3)|large_intestine(1)|pancreas(1)|ovary(1)|central_nervous_system(1)	7	Breast(64;0.137)		Epithelial(68;0.105)			GCCAGGCATTCGACAGGCCTG	0.512													28	36					0	0	0.000720815	0	0
JPH1	56704	broad.mit.edu	37	8	75227604	75227604	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr8:75227604G>A	uc003yae.2	-	2	671	c.631C>T	c.(631-633)CTC>TTC	p.L211F	JPH1_uc003yaf.2_Missense_Mutation_p.L211F|JPH1_uc003yag.1_Missense_Mutation_p.L75F	NM_020647	NP_065698	Q9HDC5	JPH1_HUMAN	junctophilin 1	211	Cytoplasmic (Potential).				calcium ion transport into cytosol|regulation of ryanodine-sensitive calcium-release channel activity	integral to membrane|junctional membrane complex|junctional sarcoplasmic reticulum membrane|plasma membrane				ovary(1)	1	Breast(64;0.00576)		BRCA - Breast invasive adenocarcinoma(89;0.0499)|Epithelial(68;0.0728)|all cancers(69;0.176)			CTCCGGAAGAGGCCGCCCTTC	0.662													36	74					0	0	0.000953801	0	0
RALYL	138046	broad.mit.edu	37	8	85441753	85441753	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr8:85441753G>A	uc003ycq.3	+	3	613	c.197G>A	c.(196-198)CGA>CAA	p.R66Q	RALYL_uc003ycr.3_Missense_Mutation_p.R66Q|RALYL_uc003ycs.3_Missense_Mutation_p.R66Q|RALYL_uc010lzy.2_Missense_Mutation_p.R66Q|RALYL_uc003yct.3_Missense_Mutation_p.R79Q	NM_001100392	NP_001093862	Q86SE5	RALYL_HUMAN	RALY RNA binding protein-like isoform 2	66	RRM.						identical protein binding|nucleotide binding|RNA binding			ovary(1)	1						ATGAGTGAGCGACATGCAAGA	0.428													12	37					0	0	0.00185496	0	0
FAM82B	51115	broad.mit.edu	37	8	87497142	87497142	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr8:87497142C>T	uc003ydu.2	-	5	704	c.544G>A	c.(544-546)GCT>ACT	p.A182T	FAM82B_uc011lfz.1_Intron|FAM82B_uc011lga.1_Intron	NM_016033	NP_057117	Q96DB5	RMD1_HUMAN	regulator of microtubule dynamics 1	182	TPR 1.					microtubule|spindle pole	binding			ovary(1)	1						GCAATTTTAGCCTTGATGCCT	0.279													28	49					0	0	0.00283554	0	0
MMP16	4325	broad.mit.edu	37	8	89058940	89058940	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr8:89058940C>T	uc003yeb.3	-	9	1728	c.1446G>A	c.(1444-1446)GGG>GGA	p.G482G		NM_005941	NP_005932	P51512	MMP16_HUMAN	matrix metalloproteinase 16 isoform 1	482	Extracellular (Potential).|Hemopexin-like 3.				collagen catabolic process|proteolysis	cell surface|integral to plasma membrane|proteinaceous extracellular matrix	calcium ion binding|enzyme activator activity|metalloendopeptidase activity|zinc ion binding			upper_aerodigestive_tract(2)|ovary(2)|central_nervous_system(1)|urinary_tract(1)|skin(1)|kidney(1)	8						ATTCAGGGATCCCTTTCCAGA	0.378													32	47					0	0	0.00058488	0	0
RUNX1T1	862	broad.mit.edu	37	8	93017364	93017364	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr8:93017364C>T	uc003yfd.2	-	5	804	c.720G>A	c.(718-720)GGG>GGA	p.G240G	RUNX1T1_uc003yfc.1_Silent_p.G213G|RUNX1T1_uc003yfe.1_Silent_p.G203G|RUNX1T1_uc010mao.2_Silent_p.G213G|RUNX1T1_uc011lgi.1_Silent_p.G251G|RUNX1T1_uc003yfb.1_Silent_p.G203G|RUNX1T1_uc003yff.1_Silent_p.G203G	NM_175634	NP_783552	Q06455	MTG8_HUMAN	acute myelogenous leukemia 1 translocation 1	240					generation of precursor metabolites and energy	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(9)|large_intestine(3)|breast(2)|central_nervous_system(1)|pancreas(1)	16			BRCA - Breast invasive adenocarcinoma(11;0.0141)			TTCGCCTCTTCCCGTTTTCGT	0.532													35	101					0	0	0.0025221	0	0
RAD54B	25788	broad.mit.edu	37	8	95384577	95384577	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr8:95384577G>A	uc003ygk.2	-	15	2652	c.2554C>T	c.(2554-2556)CAG>TAG	p.Q852*		NM_012415	NP_036547	O95073	FSBP_HUMAN	RAD54 homolog B	Error:Variant_position_missing_in_O95073_after_alignment					double-strand break repair via homologous recombination|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA translocase activity|protein binding			kidney(2)|lung(1)|skin(1)	4	Breast(36;4.5e-05)		BRCA - Breast invasive adenocarcinoma(8;0.00217)			GGACCAAGCTGACAATCTCTA	0.368								Direct_reversal_of_damage|Homologous_recombination					10	56					0	0	0.000978159	0	0
RGS22	26166	broad.mit.edu	37	8	101084449	101084449	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr8:101084449G>A	uc003yjb.1	-	5	544	c.349C>T	c.(349-351)CGT>TGT	p.R117C	RGS22_uc003yja.1_Intron|RGS22_uc003yjc.1_Missense_Mutation_p.R117C|RGS22_uc011lgz.1_5'Flank|RGS22_uc010mbo.1_RNA	NM_015668	NP_056483	Q8NE09	RGS22_HUMAN	regulator of G-protein signaling 22	117					negative regulation of signal transduction	cytoplasm|plasma membrane	GTPase activator activity|signal transducer activity			ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7			Epithelial(11;6.71e-08)|all cancers(13;4.19e-06)|OV - Ovarian serous cystadenocarcinoma(57;0.000469)|STAD - Stomach adenocarcinoma(118;0.169)			CCTTCTTCACGACTGAGACAC	0.348													25	50					0	0	0.000878237	0	0
RGS22	26166	broad.mit.edu	37	8	101092404	101092404	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr8:101092404G>A	uc003yjb.1	-	4	492	c.297C>T	c.(295-297)GCC>GCT	p.A99A	RGS22_uc003yja.1_Silent_p.A3A|RGS22_uc003yjc.1_Silent_p.A99A|RGS22_uc010mbo.1_RNA	NM_015668	NP_056483	Q8NE09	RGS22_HUMAN	regulator of G-protein signaling 22	99					negative regulation of signal transduction	cytoplasm|plasma membrane	GTPase activator activity|signal transducer activity			ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7			Epithelial(11;6.71e-08)|all cancers(13;4.19e-06)|OV - Ovarian serous cystadenocarcinoma(57;0.000469)|STAD - Stomach adenocarcinoma(118;0.169)			CTTCATCGGGGGCATTCATTT	0.323													38	100					0	0	0.000781405	0	0
ZFPM2	23414	broad.mit.edu	37	8	106813372	106813372	+	Silent	SNP	G	C	C			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr8:106813372G>C	uc003ymd.2	+	8	1085	c.1062G>C	c.(1060-1062)CTG>CTC	p.L354L	ZFPM2_uc011lhs.1_Silent_p.L85L|uc003yme.1_5'Flank	NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	354	C2H2-type 2.				blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			ACCAACACCTGTTCTCCCATC	0.498													35	72					0	0	0.000814825	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110448632	110448632	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr8:110448632G>A	uc003yne.2	+	30	3675	c.3571G>A	c.(3571-3573)GAA>AAA	p.E1191K		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	1191	Extracellular (Potential).|IPT/TIG 5.				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			AGTTGGAAATGAAACCTGCAA	0.358										HNSCC(38;0.096)			17	22					0	0	0.00074312	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110457016	110457016	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr8:110457016C>T	uc003yne.2	+	38	5022	c.4918C>T	c.(4918-4920)CTG>TTG	p.L1640L		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	1640	Extracellular (Potential).|IPT/TIG 8.				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			TGTCTACAACCTGGGCACTGC	0.413										HNSCC(38;0.096)			67	169					0	0	0.000781405	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110457046	110457046	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr8:110457046G>A	uc003yne.2	+	38	5052	c.4948G>A	c.(4948-4950)GAA>AAA	p.E1650K		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	1650	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			GTTGTCCAATGAATTTGATAG	0.428										HNSCC(38;0.096)			74	115					0	0	0.000781405	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110457371	110457371	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr8:110457371C>T	uc003yne.2	+	38	5377	c.5273C>T	c.(5272-5274)TCT>TTT	p.S1758F		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	1758	Extracellular (Potential).|IPT/TIG 10.				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			TTCCCAAACTCTGTCATAGGA	0.418										HNSCC(38;0.096)			23	52					0	0	0.00188189	0	0
CSMD3	114788	broad.mit.edu	37	8	113318380	113318380	+	Missense_Mutation	SNP	T	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr8:113318380T>A	uc003ynu.2	-	51	8086	c.7927A>T	c.(7927-7929)ATA>TTA	p.I2643L	CSMD3_uc003yns.2_Missense_Mutation_p.I1845L|CSMD3_uc003ynt.2_Missense_Mutation_p.I2603L|CSMD3_uc011lhx.1_Missense_Mutation_p.I2539L	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	2643	Extracellular (Potential).|Sushi 15.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						GTTGTTAGTATTCCTCCATTT	0.353										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			10	19					0	0	0.000673444	0	0
CSMD3	114788	broad.mit.edu	37	8	113347699	113347699	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr8:113347699C>T	uc003ynu.2	-	45	7183	c.7024G>A	c.(7024-7026)GGA>AGA	p.G2342R	CSMD3_uc003yns.2_Missense_Mutation_p.G1544R|CSMD3_uc003ynt.2_Missense_Mutation_p.G2302R|CSMD3_uc011lhx.1_Missense_Mutation_p.G2238R|CSMD3_uc003ynw.1_Missense_Mutation_p.G53R	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	2342	Extracellular (Potential).|CUB 13.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						TGGTCTGGTCCATCCCTATGA	0.373										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			10	15					0	0	0.000978159	0	0
GSDMC	56169	broad.mit.edu	37	8	130765052	130765052	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr8:130765052C>T	uc003ysr.2	-	7	1618	c.736G>A	c.(736-738)GAA>AAA	p.E246K		NM_031415	NP_113603	Q9BYG8	GSDMC_HUMAN	melanoma-derived leucine zipper, extra-nuclear	246						mitochondrion				ovary(2)|skin(1)	3						cctaccatttcggaaatttcg	0													26	66					0	0	0.000586117	0	0
KCNQ3	3786	broad.mit.edu	37	8	133141957	133141957	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr8:133141957C>T	uc003ytj.2	-	15	2396	c.2171G>A	c.(2170-2172)GGA>GAA	p.G724E	KCNQ3_uc010mdt.2_Missense_Mutation_p.G712E	NM_004519	NP_004510	O43525	KCNQ3_HUMAN	potassium voltage-gated channel KQT-like protein	724					axon guidance|synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Esophageal squamous(12;0.00507)|Ovarian(258;0.00579)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000311)			AGAACTGGGTCCCCCTCGGGG	0.577													14	24					0	0	0.00244969	0	0
TG	7038	broad.mit.edu	37	8	133900697	133900697	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr8:133900697C>T	uc003ytw.2	+	10	2686	c.2645C>T	c.(2644-2646)TCC>TTC	p.S882F		NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	882	Thyroglobulin type-1 7.				hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		TACCCGGGGTCCTACTCAGAC	0.552													15	26					0	0	0.00244969	0	0
TG	7038	broad.mit.edu	37	8	134146996	134146996	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr8:134146996C>T	uc003ytw.2	+	48	8306	c.8265C>T	c.(8263-8265)CTC>CTT	p.L2755L	TG_uc010mdw.2_Silent_p.L1514L|TG_uc011ljb.1_Silent_p.L1124L|TG_uc011ljc.1_Silent_p.L888L	NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	2755					hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		GAGAAGATCTCCTAAGCCTCC	0.552													15	24					0	0	0.000422831	0	0
JRK	8629	broad.mit.edu	37	8	143740339	143740339	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr8:143740339C>T	uc003ywo.2	-	4	2113	c.1599G>A	c.(1597-1599)GAG>GAA	p.E533E	JRK_uc003ywp.2_3'UTR	NM_001077527	NP_001070995			jerky isoform b												0	all_cancers(97;3.96e-12)|all_epithelial(106;1.19e-08)|Lung NSC(106;0.000413)|all_lung(105;0.00106)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)	Acute lymphoblastic leukemia(644;2.31e-05)				CTACCACATCCTCAAGGCCCA	0.522													8	27					0	0	0.000274275	0	0
ARHGAP39	80728	broad.mit.edu	37	8	145770886	145770886	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr8:145770886G>A	uc003zdt.1	-	7	2823	c.2268C>T	c.(2266-2268)GAC>GAT	p.D756D	ARHGAP39_uc011llk.1_Silent_p.D756D|ARHGAP39_uc003zds.1_Silent_p.D756D	NM_025251	NP_079527	Q9C0H5	RHG39_HUMAN	KIAA1688 protein	756	MyTH4.				axon guidance|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytoskeleton|cytosol|nucleus	GTPase activator activity				0						TGGCCCGCCGGTCACCCATGT	0.642													8	42					0	0	0.000442599	0	0
PTPRD	5789	broad.mit.edu	37	9	8465523	8465523	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr9:8465523G>A	uc003zkk.2	-	31	4368	c.3657C>T	c.(3655-3657)CTC>CTT	p.L1219L	PTPRD_uc003zkp.2_Silent_p.L808L|PTPRD_uc003zkq.2_Silent_p.L808L|PTPRD_uc003zkr.2_Silent_p.L803L|PTPRD_uc003zks.2_Silent_p.L798L|PTPRD_uc003zkl.2_Silent_p.L1210L|PTPRD_uc003zkm.2_Silent_p.L1206L|PTPRD_uc003zkn.2_Silent_p.L808L|PTPRD_uc003zko.2_Silent_p.L805L	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	1219	Extracellular (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		GACCACTTTGGAGTTGCTTGT	0.403										TSP Lung(15;0.13)			8	8					0	0	0.000442599	0	0
KIAA1797	54914	broad.mit.edu	37	9	20990168	20990168	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr9:20990168G>A	uc003zog.1	+	44	5414	c.5051G>A	c.(5050-5052)TGG>TAG	p.W1684*	KIAA1797_uc003zoh.1_Nonsense_Mutation_p.W1120*	NM_017794	NP_060264	Q5VW36	K1797_HUMAN	hypothetical protein LOC54914	1684						integral to membrane	binding			ovary(8)|breast(1)|kidney(1)	10				GBM - Glioblastoma multiforme(3;2.1e-125)|Lung(42;2.76e-14)|LUSC - Lung squamous cell carcinoma(42;1.99e-11)		GTGGTTGCATGGGCTGACCAC	0.498													15	47					0	0	0.00121646	0	0
UBAP2	55833	broad.mit.edu	37	9	33986766	33986767	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr9:33986766_33986767CG>AT	uc003ztq.1	-	6	624_625	c.511_512CG>AT	c.(511-513)CGG>ATG	p.R171M	UBAP2_uc011loc.1_Missense_Mutation_p.R133M|UBAP2_uc011lod.1_Translation_Start_Site|UBAP2_uc011loe.1_Intron|UBAP2_uc011lof.1_Missense_Mutation_p.R96M|UBAP2_uc011log.1_Missense_Mutation_p.R170M|UBAP2_uc003ztr.2_Missense_Mutation_p.R96M	NM_018449	NP_060919	Q5T6F2	UBAP2_HUMAN	ubiquitin associated protein 2	171										ovary(3)	3			LUSC - Lung squamous cell carcinoma(29;0.00575)	GBM - Glioblastoma multiforme(74;0.168)		ACCTCTACCCCGGGCTCGCTTG	0.465													9	436					0	0	6.4e-05	0	0
C9orf128	392307	broad.mit.edu	37	9	35825665	35825665	+	Missense_Mutation	SNP	T	G	G			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr9:35825665T>G	uc010mlc.2	-	2	779	c.494A>C	c.(493-495)CAA>CCA	p.Q165P	C9orf128_uc003zyj.2_RNA|C9orf128_uc011lpg.1_Missense_Mutation_p.Q165P	NM_001012446	NP_001012448	A6H8Z2	CI128_HUMAN	hypothetical protein LOC392307	165											0	all_epithelial(49;0.161)		LUSC - Lung squamous cell carcinoma(32;0.00521)|Lung(28;0.00697)|STAD - Stomach adenocarcinoma(86;0.194)			TGTGTCCACTTGGACCTGGGA	0.522											OREG0019180	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	63	145					0	0	0.000781405	0	0
CNTNAP3	79937	broad.mit.edu	37	9	39178193	39178193	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr9:39178193C>T	uc004abi.2	-	5	942	c.703G>A	c.(703-705)GAA>AAA	p.E235K	CNTNAP3_uc004abj.2_Missense_Mutation_p.E235K|CNTNAP3_uc011lqr.1_RNA|CNTNAP3_uc004abk.1_Missense_Mutation_p.E235K|CNTNAP3_uc011lqs.1_Missense_Mutation_p.E235K|CNTNAP3_uc004abl.1_Missense_Mutation_p.E147K	NM_033655	NP_387504	Q9BZ76	CNTP3_HUMAN	cell recognition molecule CASPR3 precursor	235	Extracellular (Potential).|Laminin G-like 1.				cell adhesion|cell recognition|signal transduction	extracellular region|integral to membrane|plasma membrane	receptor binding			ovary(1)	1				GBM - Glioblastoma multiforme(29;0.02)|Lung(182;0.0681)		TTAATTAATTCCAGAGTAATG	0.294													33	53					0	0	0.000680045	0	0
FAM75A2	642265	broad.mit.edu	37	9	39888156	39888156	+	Silent	SNP	C	G	G			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr9:39888156C>G	uc004abp.2	+	4	1172	c.1143C>G	c.(1141-1143)CCC>CCG	p.P381P		NM_001040065	NP_001035154	Q5RGS2	F75A2_HUMAN	hypothetical protein LOC642265	381						integral to membrane					0				GBM - Glioblastoma multiforme(29;0.02)|Lung(182;0.0681)		ACCCAAAACCCTTCTGGAACA	0.458													66	66					0	0	0.000781405	0	0
LOC442421	442421	broad.mit.edu	37	9	66499680	66499680	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr9:66499680C>A	uc004aee.1	+	1	490	c.490C>A	c.(490-492)CCC>ACC	p.P164T	LOC442421_uc004aed.1_RNA					Homo sapiens hypothetical LOC442421, mRNA (cDNA clone IMAGE:40031134).												0						TCATGTTAACCCCTTCCCAGG	0.582													6	24					8.12818e-05	0.000379453	0.00198382	1	0
LOC442421	442421	broad.mit.edu	37	9	66499794	66499794	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr9:66499794C>T	uc004aee.1	+	1	604	c.604C>T	c.(604-606)CGC>TGC	p.R202C	LOC442421_uc004aed.1_RNA					Homo sapiens hypothetical LOC442421, mRNA (cDNA clone IMAGE:40031134).												0						GTGCAAGTCGCGCAAGGAGCA	0.587													6	66					0	0	0.00136819	0	0
Unknown	0	broad.mit.edu	37	9	68728848	68728848	+	RNA	SNP	A	C	C			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr9:68728848A>C	uc004aez.1	+	3		c.689A>C			uc004afa.1_RNA|uc010mnp.1_RNA					Homo sapiens cDNA, FLJ18209.																		aagaagaaaaagagcaaagat	0.204													14	66					0	0	0.000308642	0	0
PRKACG	5568	broad.mit.edu	37	9	71628484	71628484	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr9:71628484G>A	uc004agy.2	-	1	556	c.525C>T	c.(523-525)ATC>ATT	p.I175I		NM_002732	NP_002723	P22612	KAPCG_HUMAN	protein kinase, cAMP-dependent, catalytic,	175	Protein kinase.				activation of phospholipase C activity|activation of protein kinase A activity|blood coagulation|cellular response to glucagon stimulus|energy reserve metabolic process|gluconeogenesis|intracellular protein kinase cascade|male gonad development|nerve growth factor receptor signaling pathway|regulation of insulin secretion|spermatogenesis|transmembrane transport|triglyceride catabolic process|water transport	cytosol|nucleoplasm	ATP binding|cAMP-dependent protein kinase activity			ovary(1)|pancreas(1)|skin(1)	3						CCTGCTGGTCGATGAGGAGAT	0.642													7	15					0	0	0.00198382	0	0
PRKACG	5568	broad.mit.edu	37	9	71628866	71628866	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr9:71628866C>T	uc004agy.2	-	1	174	c.143G>A	c.(142-144)AGG>AAG	p.R48K		NM_002732	NP_002723	P22612	KAPCG_HUMAN	protein kinase, cAMP-dependent, catalytic,	48	Protein kinase.				activation of phospholipase C activity|activation of protein kinase A activity|blood coagulation|cellular response to glucagon stimulus|energy reserve metabolic process|gluconeogenesis|intracellular protein kinase cascade|male gonad development|nerve growth factor receptor signaling pathway|regulation of insulin secretion|spermatogenesis|transmembrane transport|triglyceride catabolic process|water transport	cytosol|nucleoplasm	ATP binding|cAMP-dependent protein kinase activity			ovary(1)|pancreas(1)|skin(1)	3						GCCCAGCGTCCTGAGCCGTTC	0.597													15	49					0	0	0.000308642	0	0
PRUNE2	158471	broad.mit.edu	37	9	79322292	79322292	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr9:79322292G>A	uc010mpk.2	-	8	5022	c.4898C>T	c.(4897-4899)TCC>TTC	p.S1633F		NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	1633					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						AGAGGAAAAGGAATCACCATC	0.363													19	26					0	0	0.000958276	0	0
FLJ43950	347127	broad.mit.edu	37	9	84530616	84530616	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr9:84530616G>A	uc011lst.1	+	4	638	c.537G>A	c.(535-537)CTG>CTA	p.L179L		NR_026851				SubName: Full=cDNA FLJ43950 fis, clone TESTI4015293, moderately similar to FAM75-like protein;												0						CCCCTGACCTGATCACCACCT	0.532													9	30					0	0	0.000274275	0	0
WNK2	65268	broad.mit.edu	37	9	96054861	96054861	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr9:96054861C>T	uc004ati.1	+	23	5225	c.5225C>T	c.(5224-5226)CCG>CTG	p.P1742L	WNK2_uc011lud.1_Missense_Mutation_p.P1705L|WNK2_uc004atj.2_Missense_Mutation_p.P1705L|WNK2_uc004atk.2_Missense_Mutation_p.P1342L|WNK2_uc004atl.1_Missense_Mutation_p.P299L	NM_006648	NP_006639	Q9Y3S1	WNK2_HUMAN	WNK lysine deficient protein kinase 2	1742					intracellular protein kinase cascade		ATP binding|protein binding|protein serine/threonine kinase activity			lung(4)|stomach(3)|ovary(2)|large_intestine(1)|central_nervous_system(1)|breast(1)	12						GAGCCCCCGCCGAGTGACATG	0.622													7	7					0	0	0.000157383	0	0
ALDOB	229	broad.mit.edu	37	9	104189790	104189790	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr9:104189790C>T	uc004bbk.2	-	5	596	c.514G>A	c.(514-516)GCT>ACT	p.A172T		NM_000035	NP_000026	P05062	ALDOB_HUMAN	aldolase B, fructose-bisphosphate	172					fructose 1,6-bisphosphate metabolic process|fructose catabolic process|gluconeogenesis|glycolysis|NADH oxidation|positive regulation of ATPase activity|vacuolar proton-transporting V-type ATPase complex assembly	centriolar satellite|cytosol	ATPase binding|cytoskeletal protein binding|fructose binding|fructose-bisphosphate aldolase activity|identical protein binding			skin(1)	1		Acute lymphoblastic leukemia(62;0.0559)				GCGTAGCGAGCCAGGGCGTTG	0.517													14	35					0	0	0.000422831	0	0
OR13C3	138803	broad.mit.edu	37	9	107298641	107298641	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr9:107298641G>A	uc004bcb.1	-	1	454	c.454C>T	c.(454-456)CGT>TGT	p.R152C		NM_001001961	NP_001001961	Q8NGS6	O13C3_HUMAN	olfactory receptor, family 13, subfamily C,	152	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1						GCCACATAACGATCAAATGCC	0.473													36	84					0	0	0.00128727	0	0
C9orf152	401546	broad.mit.edu	37	9	112963360	112963360	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr9:112963360G>A	uc011lwk.1	-	2	1142	c.588C>T	c.(586-588)TTC>TTT	p.F196F		NM_001012993	NP_001013011	Q5JTZ5	CI152_HUMAN	hypothetical protein LOC401546	196											0						ATTGAGTGCTGAATTTTAAGC	0.502													25	58					0	0	0.000720815	0	0
C9orf152	401546	broad.mit.edu	37	9	112963727	112963727	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr9:112963727G>A	uc011lwk.1	-	2	775	c.221C>T	c.(220-222)TCG>TTG	p.S74L		NM_001012993	NP_001013011	Q5JTZ5	CI152_HUMAN	hypothetical protein LOC401546	74											0						ATTGACCATCGATTCTGCAGG	0.552													6	29					0	0	0.00116845	0	0
TNC	3371	broad.mit.edu	37	9	117810806	117810806	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr9:117810806G>A	uc004bjj.3	-	16	4947	c.4585C>T	c.(4585-4587)CTG>TTG	p.L1529L	TNC_uc010mvf.2_Intron	NM_002160	NP_002151	P24821	TENA_HUMAN	tenascin C precursor	1529	Fibronectin type-III 11.				cell adhesion|response to wounding|signal transduction	extracellular space	receptor binding|syndecan binding			central_nervous_system(4)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	7						AGAAGGGGCAGGGCCTCTGAA	0.473													7	23					0	0	0.000157383	0	0
ASTN2	23245	broad.mit.edu	37	9	119976882	119976882	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr9:119976882G>A	uc004bjs.1	-	3	871	c.770C>T	c.(769-771)TCT>TTT	p.S257F	ASTN2_uc004bjr.1_Missense_Mutation_p.S257F|ASTN2_uc004bjt.1_Missense_Mutation_p.S257F	NM_198187	NP_937830	O75129	ASTN2_HUMAN	astrotactin 2 isoform c	257	Cytoplasmic (Potential).					integral to membrane				skin(4)|ovary(3)|breast(1)|kidney(1)	9						CAGCAGCACAGATGGGATGTA	0.627													20	39					0	0	0.00229938	0	0
CDK5RAP2	55755	broad.mit.edu	37	9	123216103	123216103	+	Silent	SNP	G	A	A	rs79089953	byFrequency	TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr9:123216103G>A	uc004bkf.2	-	21	2605	c.2424C>T	c.(2422-2424)TTC>TTT	p.F808F	CDK5RAP2_uc004bke.2_Silent_p.F93F|CDK5RAP2_uc004bkg.2_Silent_p.F808F|CDK5RAP2_uc011lxw.1_Silent_p.F73F|CDK5RAP2_uc011lxx.1_RNA|CDK5RAP2_uc011lxy.1_RNA|CDK5RAP2_uc011lxz.1_Silent_p.F73F|CDK5RAP2_uc011lya.1_Silent_p.F73F|CDK5RAP2_uc004bkh.1_Intron|CDK5RAP2_uc004bki.2_Silent_p.F575F	NM_018249	NP_060719	Q96SN8	CK5P2_HUMAN	CDK5 regulatory subunit associated protein 2	808					brain development|centrosome organization|chromosome segregation|G2/M transition of mitotic cell cycle|microtubule bundle formation|negative regulation of centriole replication|positive regulation of transcription, DNA-dependent|regulation of neuron differentiation|regulation of spindle checkpoint	cytosol|Golgi apparatus|microtubule|pericentriolar material|perinuclear region of cytoplasm|spindle pole	calmodulin binding|microtubule binding|neuronal Cdc2-like kinase binding|transcription regulatory region DNA binding			ovary(2)|lung(1)|skin(1)	4						GCTCTGTCAAGAATAGTTGTC	0.448													33	53					0	0	0.00148497	0	0
TTLL11	158135	broad.mit.edu	37	9	124801574	124801574	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr9:124801574G>A	uc004blt.1	-	2	994	c.806C>T	c.(805-807)TCC>TTC	p.S269F	TTLL11_uc011lyl.1_Missense_Mutation_p.S269F|TTLL11_uc004blr.2_RNA|TTLL11_uc011lym.1_5'UTR|TTLL11_uc004blu.1_Missense_Mutation_p.S269F	NM_194252	NP_919228	Q8NHH1	TTL11_HUMAN	tubulin tyrosine ligase-like family, member 11	269	TTL.				protein modification process	cilium|microtubule basal body	tubulin-tyrosine ligase activity				0						CACTTGACCGGAGAATATGTC	0.418													28	60					0	0	0.0024448	0	0
OR1L8	138881	broad.mit.edu	37	9	125330664	125330664	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr9:125330664G>A	uc004bmp.1	-	1	93	c.93C>T	c.(91-93)CTC>CTT	p.L31L		NM_001004454	NP_001004454	Q8NGR8	OR1L8_HUMAN	olfactory receptor, family 1, subfamily L,	31	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3						CGATGAGGAAGAGAACAAAGA	0.502													22	46					0	0	0.00229938	0	0
RABGAP1	23637	broad.mit.edu	37	9	125746845	125746845	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr9:125746845G>A	uc011lzh.1	+	3	366	c.232G>A	c.(232-234)GGG>AGG	p.G78R	RABGAP1_uc004bnl.3_RNA|RABGAP1_uc004bnm.1_Missense_Mutation_p.G78R	NM_012197	NP_036329	Q9Y3P9	RBGP1_HUMAN	RAB GTPase activating protein 1	78					cell cycle	centrosome|cytosol|microtubule associated complex	Rab GTPase activator activity|tubulin binding			ovary(3)|kidney(2)	5						CGACCAGCCAGGGGAAAAGGA	0.478													16	53					0	0	0.000566183	0	0
C9orf117	286207	broad.mit.edu	37	9	130475045	130475045	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr9:130475045G>A	uc004brn.1	+	7	1235	c.1195G>A	c.(1195-1197)GAG>AAG	p.E399K	PTRH1_uc004brm.2_Intron|C9orf117_uc010mxl.1_RNA	NM_001012502	NP_001012520	Q5JU67	CI117_HUMAN	hypothetical protein LOC286207	399											0						ATGGCACAAGGAGATGCTGCA	0.622													11	48					0	0	0.000978159	0	0
C9orf117	286207	broad.mit.edu	37	9	130475122	130475123	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr9:130475122_130475123GG>AA	uc004brn.1	+	7	1312_1313	c.1272_1273GG>AA	c.(1270-1275)CAGGAG>CAAAAG	p.E425K	PTRH1_uc004brm.2_Intron|C9orf117_uc010mxl.1_RNA	NM_001012502	NP_001012520	Q5JU67	CI117_HUMAN	hypothetical protein LOC286207	425											0						GTCCCCACCAGGAGTCACAGTC	0.609													6	14					0	0	6.4e-05	0	0
DOLPP1	57171	broad.mit.edu	37	9	131843440	131843440	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr9:131843440C>T	uc004bxc.2	+	1	58	c.30C>T	c.(28-30)CCC>CCT	p.P10P	DOLPP1_uc004bxd.2_Silent_p.P10P|DOLPP1_uc004bxe.2_RNA	NM_020438	NP_065171	Q86YN1	DOPP1_HUMAN	dolichyl pyrophosphate phosphatase 1 isoform a	10					dolichyl diphosphate biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	integral to endoplasmic reticulum membrane	dolichyldiphosphatase activity			skin(1)	1						GCTCGCTCCCCGCTTCATGGC	0.662													18	67					0	0	0.00188189	0	0
CEL	1056	broad.mit.edu	37	9	135940432	135940433	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr9:135940432_135940433CG>AT	uc010naa.1	+	4	371_372	c.355_356CG>AT	c.(355-357)CGG>ATG	p.R119M		NM_001807	NP_001798	P19835	CEL_HUMAN	carboxyl ester lipase precursor	116	Heparin-binding.				cholesterol catabolic process|fatty acid catabolic process|intestinal cholesterol absorption|intestinal lipid catabolic process|pancreatic juice secretion|protein esterification	cytosol|extracellular space	acylglycerol lipase activity|carboxylesterase activity|heparin binding|sterol esterase activity|triglyceride lipase activity			pancreas(1)	1				OV - Ovarian serous cystadenocarcinoma(145;1.03e-40)|Epithelial(140;3.58e-37)|GBM - Glioblastoma multiforme(294;0.00164)|READ - Rectum adenocarcinoma(205;0.196)		CTCAGTCTCCCGGGACCTGCCC	0.658													9	264					0	0	6.4e-05	0	0
COL5A1	1289	broad.mit.edu	37	9	137716449	137716449	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr9:137716449C>T	uc004cfe.2	+	62	5084	c.4702C>T	c.(4702-4704)CCC>TCC	p.P1568S	uc004cff.2_Intron	NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	1568	Triple-helical region.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		CCCCCAGGGCCCCCCGGGAGA	0.657													11	21					0	0	0.000978159	0	0
FCN1	2219	broad.mit.edu	37	9	137808303	137808303	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr9:137808303C>T	uc004cfi.2	-	2	200	c.108G>A	c.(106-108)GTG>GTA	p.V36V		NM_002003	NP_001994	O00602	FCN1_HUMAN	ficolin 1 precursor	36					opsonization|signal transduction	collagen|extracellular space	antigen binding|calcium ion binding|receptor binding|sugar binding			large_intestine(1)|ovary(1)	2		Myeloproliferative disorder(178;0.0333)		OV - Ovarian serous cystadenocarcinoma(145;3.46e-08)|Epithelial(140;6.01e-08)|all cancers(34;3.69e-07)		CCACCACCTTCACCTCTGCAG	0.642													48	95					0	0	0.000781405	0	0
KCNT1	57582	broad.mit.edu	37	9	138656903	138656903	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr9:138656903G>A	uc011mdq.1	+	12	1136	c.1062G>A	c.(1060-1062)ATG>ATA	p.M354I	KCNT1_uc011mdr.1_Missense_Mutation_p.M181I|KCNT1_uc010nbf.2_Missense_Mutation_p.M309I|KCNT1_uc004cgo.1_Missense_Mutation_p.M103I	NM_020822	NP_065873	Q5JUK3	KCNT1_HUMAN	potassium channel, subfamily T, member 1	354						membrane	binding|calcium-activated potassium channel activity			large_intestine(2)|ovary(1)|pancreas(1)	4		Myeloproliferative disorder(178;0.0821)		OV - Ovarian serous cystadenocarcinoma(145;2.11e-07)|Epithelial(140;1.57e-06)|all cancers(34;9.22e-05)		ACCTCTGGATGGAGCGGCAGA	0.632													9	26					0	0	0.000274275	0	0
LHX3	8022	broad.mit.edu	37	9	139089222	139089222	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr9:139089222G>A	uc004cha.2	-	6	1240	c.1143C>T	c.(1141-1143)TTC>TTT	p.F381F	LHX3_uc004cgz.2_Silent_p.F386F	NM_178138	NP_835258	Q9UBR4	LHX3_HUMAN	LIM homeobox protein 3 isoform a	381					inner ear development|organ morphogenesis|positive regulation of transcription, DNA-dependent	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(1)	1		Myeloproliferative disorder(178;0.0511)		Epithelial(140;8.43e-08)|OV - Ovarian serous cystadenocarcinoma(145;1.26e-07)		GGCTGGCAGGGAAGTCGGGGT	0.706													10	18					0	0	0.00136819	0	0
C9orf139	401563	broad.mit.edu	37	9	139929414	139929414	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr9:139929414G>A	uc004ckp.1	+	3	1995	c.481G>A	c.(481-483)GAA>AAA	p.E161K	FUT7_uc004ckq.2_5'Flank	NM_207511	NP_997394	Q6ZV77	CI139_HUMAN	hypothetical protein LOC401563	161											0	all_cancers(76;0.0893)	Myeloproliferative disorder(178;0.0821)	STAD - Stomach adenocarcinoma(284;0.123)	OV - Ovarian serous cystadenocarcinoma(145;2.99e-05)|Epithelial(140;0.000493)		GGGTCAGAACGAAAGCCTCTC	0.632													40	81					0	0	0.00222228	0	0
CSF2RA	1438	broad.mit.edu	37	X	1413232	1413232	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chrX:1413232C>T	uc010nct.2	+	9	980	c.658C>T	c.(658-660)CCT>TCT	p.P220S	CSF2RA_uc011mhb.1_Missense_Mutation_p.P220S|CSF2RA_uc004cpq.2_Intron|CSF2RA_uc004cpn.2_Missense_Mutation_p.P220S|CSF2RA_uc004cpo.2_Missense_Mutation_p.P220S|CSF2RA_uc010ncu.2_RNA|CSF2RA_uc011mhc.1_Missense_Mutation_p.P87S|CSF2RA_uc004cpp.2_Missense_Mutation_p.P220S|CSF2RA_uc010ncv.2_Missense_Mutation_p.P220S|CSF2RA_uc004cpr.2_Missense_Mutation_p.P220S	NM_001161529	NP_001155001	P15509	CSF2R_HUMAN	colony stimulating factor 2 receptor alpha chain	220	Extracellular (Potential).					extracellular region|integral to plasma membrane	cytokine receptor activity			ovary(2)	2		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)			Sargramostim(DB00020)	ACGATTCAACCCTCCCAGCAA	0.572													67	218					0	0	0.000781405	0	0
MXRA5	25878	broad.mit.edu	37	X	3229074	3229074	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chrX:3229074G>A	uc004crg.3	-	7	7327	c.7170C>T	c.(7168-7170)ACC>ACT	p.T2390T		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	2390	Ig-like C2-type 8.					extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				TCTCAGAGGAGGTGGGGATCA	0.537													46	20					0	0	0.0025221	0	0
NLGN4X	57502	broad.mit.edu	37	X	6069432	6069432	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chrX:6069432G>A	uc010ndh.2	-	2	577	c.76C>T	c.(76-78)CTC>TTC	p.L26F	NLGN4X_uc004crp.2_Missense_Mutation_p.L26F|NLGN4X_uc004crq.2_Missense_Mutation_p.L26F|NLGN4X_uc010ndi.2_Missense_Mutation_p.L26F|NLGN4X_uc004crr.2_Missense_Mutation_p.L26F|NLGN4X_uc010ndj.2_Missense_Mutation_p.L26F	NM_181332	NP_851849	Q8N0W4	NLGNX_HUMAN	X-linked neuroligin 4 precursor	26					brainstem development|cell adhesion|cell-cell junction organization|cerebellum development|male courtship behavior|positive regulation of organ growth|regulation of excitatory postsynaptic membrane potential|social behavior|synapse assembly|territorial aggressive behavior|vocalization behavior	cell surface|dendrite|integral to plasma membrane|synapse	chloride ion binding|neurexin binding|protein homodimerization activity|receptor activity			skin(2)|large_intestine(1)|ovary(1)	4						AACCACAGGAGGACATTGGAG	0.498													23	13					0	0	0.000878237	0	0
WWC3	55841	broad.mit.edu	37	X	10098133	10098134	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chrX:10098133_10098134CC>TT	uc004csx.3	+	18	2768_2769	c.2570_2571CC>TT	c.(2569-2571)CCC>CTT	p.P857L	WWC3_uc010nds.2_Missense_Mutation_p.P521L|WWC3_uc010ndt.2_RNA	NM_015691	NP_056506	Q9ULE0	WWC3_HUMAN	WWC family member 3	857										ovary(4)	4						CCTTACAGCCCCGAGAAATTTC	0.545													25	10					0	0	6.4e-05	0	0
GEMIN8	54960	broad.mit.edu	37	X	14038220	14038220	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chrX:14038220G>A	uc004cwb.2	-	4	792	c.449C>T	c.(448-450)ACC>ATC	p.T150I	GEMIN8_uc004cwc.2_Missense_Mutation_p.T150I|GEMIN8_uc004cwd.2_Missense_Mutation_p.T150I	NM_017856	NP_060326	Q9NWZ8	GEMI8_HUMAN	gem (nuclear organelle) associated protein 8	150	Potential.				spliceosomal snRNP assembly	Cajal body|cytoplasm|SMN complex|spliceosomal complex	protein binding				0						ATGCCTCTCGGTCTCTGCAAA	0.443													60	24					0	0	0.000781405	0	0
CNKSR2	22866	broad.mit.edu	37	X	21508620	21508620	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chrX:21508620C>T	uc004czx.1	+	6	641	c.605C>T	c.(604-606)TCG>TTG	p.S202L	CNKSR2_uc004czw.2_Missense_Mutation_p.S202L|CNKSR2_uc011mjn.1_Missense_Mutation_p.S202L|CNKSR2_uc011mjo.1_Missense_Mutation_p.S202L	NM_014927	NP_055742	Q8WXI2	CNKR2_HUMAN	connector enhancer of kinase suppressor of Ras	202					regulation of signal transduction	cytoplasm|membrane	protein binding			large_intestine(1)|lung(1)	2						ATATCCCTGTCGTCAGATCCT	0.398													31	13					0	0	0.00058488	0	0
PTCHD1	139411	broad.mit.edu	37	X	23411972	23411972	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chrX:23411972G>A	uc004dal.3	+	3	2345	c.2337G>A	c.(2335-2337)AAG>AAA	p.K779K		NM_173495	NP_775766	Q96NR3	PTHD1_HUMAN	patched domain containing 1	779					cognition|smoothened signaling pathway	integral to membrane|plasma membrane	hedgehog receptor activity			ovary(4)|kidney(1)|skin(1)	6						TTCTGGGCAAGGATTTCACAA	0.378													17	14					0	0	0.000566183	0	0
MAGEB6	158809	broad.mit.edu	37	X	26213034	26213034	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chrX:26213034C>T	uc004dbr.2	+	2	1220	c.1071C>T	c.(1069-1071)TTC>TTT	p.F357F	MAGEB6_uc010ngc.1_Silent_p.F137F	NM_173523	NP_775794	Q8N7X4	MAGB6_HUMAN	melanoma antigen family B, 6	357	MAGE.									ovary(3)	3						GCTATGAGTTCCTGTGGGGTC	0.502													40	20					0	0	0.000781405	0	0
MAGEB16	139604	broad.mit.edu	37	X	35820676	35820676	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chrX:35820676G>A	uc010ngt.1	+	2	642	c.363G>A	c.(361-363)GTG>GTA	p.V121V		NM_001099921	NP_001093391	A2A368	MAGBG_HUMAN	melanoma antigen family B, 16	121	MAGE.									lung(3)|ovary(2)|breast(1)|skin(1)	7						CTTTTTTGGTGAATTTCATGC	0.443													14	11					0	0	0.00185496	0	0
CXorf22	170063	broad.mit.edu	37	X	35993850	35993850	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chrX:35993850C>T	uc004ddj.2	+	15	2592	c.2533C>T	c.(2533-2535)CAG>TAG	p.Q845*	CXorf22_uc010ngv.2_RNA	NM_152632	NP_689845	Q6ZTR5	CX022_HUMAN	hypothetical protein LOC170063	845										large_intestine(1)|lung(1)|ovary(1)	3						GGCAGTTGTCCAGCCAGTAAC	0.413													24	24					0	0	0.00278032	0	0
FAM47C	442444	broad.mit.edu	37	X	37028258	37028258	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chrX:37028258C>T	uc004ddl.1	+	1	1789	c.1775C>T	c.(1774-1776)TCC>TTC	p.S592F		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	592										ovary(3)	3						ACTCGGGTGTCCAGTCTCCCC	0.652													30	16					0	0	0.00058488	0	0
KCND1	3750	broad.mit.edu	37	X	48826418	48826418	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chrX:48826418G>A	uc004dlx.1	-	1	1834	c.261C>T	c.(259-261)GAC>GAT	p.D87D	KCND1_uc004dlw.1_5'Flank	NM_004979	NP_004970	Q9NSA2	KCND1_HUMAN	potassium voltage-gated channel, Shal-related	87	Cytoplasmic (Potential).					voltage-gated potassium channel complex	metal ion binding|voltage-gated potassium channel activity			ovary(2)|lung(1)	3						ACATGTCAGGGTCGCGATCGA	0.577													8	3					0	0	0.000442599	0	0
SLC7A3	84889	broad.mit.edu	37	X	70146807	70146807	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chrX:70146807G>A	uc004dyn.2	-	9	1529	c.1371C>T	c.(1369-1371)ACC>ACT	p.T457T	SLC7A3_uc004dyo.2_Silent_p.T457T	NM_032803	NP_116192	Q8WY07	CTR3_HUMAN	solute carrier family 7 (cationic amino acid	457	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process	integral to membrane|plasma membrane				ovary(1)|kidney(1)	2	Renal(35;0.156)				L-Arginine(DB00125)|L-Lysine(DB00123)|L-Ornithine(DB00129)	GTCCCCATAGGGTCAACTTCT	0.458													35	20					0	0	0.000814825	0	0
PHKA1	5255	broad.mit.edu	37	X	71877458	71877458	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chrX:71877458C>T	uc004eax.3	-	9	1199	c.898G>A	c.(898-900)GGA>AGA	p.G300R	PHKA1_uc004eay.3_Missense_Mutation_p.G300R|PHKA1_uc011mqi.1_Missense_Mutation_p.G300R	NM_002637	NP_002628	P46020	KPB1_HUMAN	phosphorylase kinase, alpha 1 (muscle) isoform	300					glucose metabolic process|glycogen catabolic process	cytosol|plasma membrane	calmodulin binding|glucan 1,4-alpha-glucosidase activity|phosphorylase kinase activity			ovary(3)|skin(1)	4	Renal(35;0.156)					GTTTTATATCCATCTCGTAGA	0.403													17	11					0	0	0.00152264	0	0
MAGEE2	139599	broad.mit.edu	37	X	75003344	75003344	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chrX:75003344T>C	uc004ecj.1	-	1	1728	c.1543A>G	c.(1543-1545)ACT>GCT	p.T515A		NM_138703	NP_619648	Q8TD90	MAGE2_HUMAN	melanoma antigen family E, 2	515										ovary(1)|skin(1)	2						AACATGATAGTTGCCTCAGAT	0.478													27	8					0	0	0.001512	0	0
DIAPH2	1730	broad.mit.edu	37	X	96212903	96212903	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chrX:96212903C>T	uc004efu.3	+	16	2087	c.1691C>T	c.(1690-1692)CCA>CTA	p.P564L	DIAPH2_uc004eft.3_Missense_Mutation_p.P564L	NM_006729	NP_006720	O60879	DIAP2_HUMAN	diaphanous 2 isoform 156	564	Poly-Pro.|FH1.				cell differentiation|cytokinesis|multicellular organismal development|oogenesis	cytosol|early endosome|Golgi apparatus|mitochondrion|nucleolus	receptor binding|Rho GTPase binding			ovary(3)|lung(1)	4						GGGCCGCCTCCACCACCACCC	0.557													13	10					0	0	0.00136819	0	0
LOC442459	442459	broad.mit.edu	37	X	98975483	98975483	+	RNA	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chrX:98975483C>T	uc011mrd.1	-	8		c.860G>A				NR_024608				Homo sapiens DNA repair protein mRNA, complete cds.												0						GAACTGGATTCCTCAAAGGAT	0.478													5	3					0	0	0.000602214	0	0
PCDH19	57526	broad.mit.edu	37	X	99551604	99551604	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chrX:99551604C>T	uc010nmz.2	-	6	4794	c.3118G>A	c.(3118-3120)GAT>AAT	p.D1040N	PCDH19_uc004efw.3_Missense_Mutation_p.D992N|PCDH19_uc004efx.3_Missense_Mutation_p.D993N	NM_020766	NP_001098713	Q8TAB3	PCD19_HUMAN	protocadherin 19 isoform b	1040	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|breast(2)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	7						ATGGTCACATCGACAGTCCTC	0.602													15	10					0	0	0.00244969	0	0
PCDH19	57526	broad.mit.edu	37	X	99662087	99662087	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chrX:99662087G>A	uc010nmz.2	-	1	3185	c.1509C>T	c.(1507-1509)TTC>TTT	p.F503F	PCDH19_uc004efw.3_Silent_p.F503F|PCDH19_uc004efx.3_Silent_p.F503F	NM_020766	NP_001098713	Q8TAB3	PCD19_HUMAN	protocadherin 19 isoform b	503	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|breast(2)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	7						AGACATAGGTGAAGACAGGCA	0.582													35	11					0	0	0.00283554	0	0
TEX13A	56157	broad.mit.edu	37	X	104464033	104464033	+	Silent	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chrX:104464033C>T	uc004ema.2	-	5	955	c.843G>A	c.(841-843)ACG>ACA	p.T281T	IL1RAPL2_uc004elz.1_Intron|TEX13A_uc004emb.2_Missense_Mutation_p.R282Q	NM_031274	NP_112564	Q9BXU3	TX13A_HUMAN	testis expressed sequence 13A	281						intracellular	zinc ion binding			ovary(2)	2						ACCAGGGGTTCGTGGTTCCAG	0.512													21	10					0	0	0.000720815	0	0
IL1RAPL2	26280	broad.mit.edu	37	X	104961395	104961395	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chrX:104961395G>A	uc004elz.1	+	7	1564	c.808G>A	c.(808-810)GGA>AGA	p.G270R		NM_017416	NP_059112	Q9NP60	IRPL2_HUMAN	interleukin 1 receptor accessory protein-like 2	270	Ig-like C2-type 3.|Extracellular (Potential).				central nervous system development|innate immune response	integral to membrane	interleukin-1, Type II, blocking receptor activity			breast(2)|ovary(1)	3						AGCATTCTTCGGATTCAGTGG	0.438													27	8					0	0	0.00127121	0	0
MUM1L1	139221	broad.mit.edu	37	X	105449869	105449870	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chrX:105449869_105449870GG>AA	uc004emf.1	+	4	1093_1094	c.444_445GG>AA	c.(442-447)AGGGAA>AGAAAA	p.E149K	MUM1L1_uc004emg.1_Missense_Mutation_p.E149K	NM_152423	NP_689636	Q5H9M0	MUML1_HUMAN	melanoma associated antigen (mutated) 1-like 1	149										ovary(2)|pancreas(1)|skin(1)	4						TTGAGGAAAGGGAAAACTCAGC	0.426													7	7					0	0	6.4e-05	0	0
COL4A6	1288	broad.mit.edu	37	X	107422626	107422626	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chrX:107422626G>A	uc004enw.3	-	26	2280	c.2177C>T	c.(2176-2178)CCT>CTT	p.P726L	COL4A6_uc004env.3_Missense_Mutation_p.P725L|COL4A6_uc011msn.1_Missense_Mutation_p.P725L|COL4A6_uc010npk.2_Missense_Mutation_p.P725L	NM_001847	NP_001838	Q14031	CO4A6_HUMAN	type IV alpha 6 collagen isoform A precursor	726	Triple-helical region.				cell adhesion|extracellular matrix organization	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(6)|urinary_tract(1)|large_intestine(1)	8						AGGGAGCCCAGGAAACCCAGG	0.507									Alport_syndrome_with_Diffuse_Leiomyomatosis				25	12					0	0	0.001512	0	0
COL4A5	1287	broad.mit.edu	37	X	107938101	107938101	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chrX:107938101C>T	uc004enz.1	+	50	4973	c.4771C>T	c.(4771-4773)CAT>TAT	p.H1591Y	COL4A5_uc011mso.1_Missense_Mutation_p.H1588Y|COL4A5_uc011msp.1_Missense_Mutation_p.H267Y	NM_033380	NP_203699	P29400	CO4A5_HUMAN	type IV collagen alpha 5 isoform 2 precursor	1585	Collagen IV NC1.				axon guidance	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(3)|central_nervous_system(1)	4						CCAGATTCCCCATTGTCCTCA	0.448									Alport_syndrome_with_Diffuse_Leiomyomatosis				26	18					0	0	0.00178596	0	0
DCAF12L1	139170	broad.mit.edu	37	X	125686229	125686229	+	Silent	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chrX:125686229G>A	uc004eul.2	-	1	614	c.363C>T	c.(361-363)TTC>TTT	p.F121F		NM_178470	NP_848565	Q5VU92	DC121_HUMAN	DDB1 and CUL4 associated factor 12-like 1	121										skin(3)|ovary(1)	4						CGTCCACCACGAAAAGCGTGT	0.637													19	7					0	0	0.00152264	0	0
ELF4	2000	broad.mit.edu	37	X	129200986	129200986	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chrX:129200986C>T	uc004evd.3	-	9	2087	c.1702G>A	c.(1702-1704)GAG>AAG	p.E568K	ELF4_uc004eve.3_Missense_Mutation_p.E568K	NM_001421	NP_001412	Q99607	ELF4_HUMAN	E74-like factor 4	568					natural killer cell proliferation|NK T cell proliferation|positive regulation of transcription from RNA polymerase II promoter	PML body	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						CTCAGGAGCTCCCTCAGGGTC	0.597			T	ERG	AML								51	27					0	0	0.000781405	0	0
MAGEC1	9947	broad.mit.edu	37	X	140994617	140994617	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chrX:140994617C>G	uc004fbt.2	+	4	1713	c.1427C>G	c.(1426-1428)TCT>TGT	p.S476C	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	476							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					TTTCCCCAGTCTCCTCTCCAG	0.468										HNSCC(15;0.026)			4	144					0	0	0.00024832	0	0
FATE1	89885	broad.mit.edu	37	X	150889963	150889963	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chrX:150889963C>T	uc004fex.2	+	3	415	c.331C>T	c.(331-333)CAT>TAT	p.H111Y		NM_033085	NP_149076	Q969F0	FATE1_HUMAN	fetal and adult testis expressed transcript	111						endoplasmic reticulum|integral to membrane				ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					CATACGTTTCCATTATGATCG	0.602													21	9					0	0	0.00278032	0	0
GABRA3	2556	broad.mit.edu	37	X	151358362	151358362	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chrX:151358362G>A	uc010ntk.1	-	9	1223	c.983C>T	c.(982-984)TCC>TTC	p.S328F		NM_000808	NP_000799	P34903	GBRA3_HUMAN	gamma-aminobutyric acid A receptor, alpha 3	328					gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity|protein binding			ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)				Alprazolam(DB00404)|Diazepam(DB00829)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	TTTAGGTAAGGAATTTCTGGC	0.458													18	19					0	0	0.000958276	0	0
RUFY2	55680	broad.mit.edu	37	10	70156583	70156583	+	Frame_Shift_Del	DEL	T	-	-			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr10:70156583delT	uc001job.2	-	4	784	c.457delA	c.(457-459)ATGfs	p.M153fs	RUFY2_uc001jnz.1_RNA|RUFY2_uc001joc.2_Intron|RUFY2_uc010qiw.1_Frame_Shift_Del_p.M60fs|RUFY2_uc001jod.1_Frame_Shift_Del_p.M118fs|RUFY2_uc009xpv.1_Frame_Shift_Del_p.M1fs|RUFY2_uc001joe.1_Frame_Shift_Del_p.M118fs	NM_017987	NP_060457	Q8WXA3	RUFY2_HUMAN	RUN and FYVE domain-containing 2 isoform a	167	RUN.					nucleus	metal ion binding			ovary(1)	1						TAATCGGCCATTTTTTTTTGC	0.398													7	76	---	---	---	---					
HTR3A	3359	broad.mit.edu	37	11	113857496	113857496	+	Frame_Shift_Del	DEL	C	-	-			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr11:113857496delC	uc010rxb.1	+	7	1213	c.980delC	c.(979-981)GCCfs	p.A327fs	HTR3A_uc010rxa.1_Intron|HTR3A_uc009yyx.2_Intron|HTR3A_uc010rxc.1_Intron	NM_213621	NP_998786	P46098	5HT3A_HUMAN	5-hydroxytryptamine (serotonin) receptor 3A	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					digestion|synaptic transmission	cell junction|integral to plasma membrane|postsynaptic membrane	serotonin binding|serotonin receptor activity|serotonin-activated cation-selective channel activity				0		all_cancers(61;2.31e-17)|all_epithelial(67;2.1e-10)|all_hematologic(158;4.64e-05)|Melanoma(852;0.000312)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|all_neural(223;0.0281)|Prostate(24;0.0294)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;2.71e-06)|Epithelial(105;2.58e-05)|all cancers(92;0.000238)|OV - Ovarian serous cystadenocarcinoma(223;0.191)	Alosetron(DB00969)|Chloroprocaine(DB01161)|Cisapride(DB00604)|Dolasetron(DB00757)|Granisetron(DB00889)|Mirtazapine(DB00370)|Ondansetron(DB00904)|Palonosetron(DB00377)|Procaine(DB00721)|Tubocurarine(DB01199)	GAGAAACCCGCCCCCTCCCAC	0.597													45	66	---	---	---	---					
EEA1	8411	broad.mit.edu	37	12	93213195	93213216	+	Frame_Shift_Del	DEL	AATATTTTCTTTACTCTTCTGT	-	-			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr12:93213195_93213216delAATATTTTCTTTACTCTTCTGT	uc001tck.2	-	14	1861_1882	c.1596_1617delACAGAAGAGTAAAGAAAATATT	c.(1594-1617)TTACAGAAGAGTAAAGAAAATATTfs	p.L532fs		NM_003566	NP_003557	Q15075	EEA1_HUMAN	early endosome antigen 1, 162kD	532_539	Gln/Glu/Lys-rich.|Potential.				early endosome to late endosome transport|synaptic vesicle to endosome fusion|vesicle fusion	cytosol|early endosome membrane|extrinsic to plasma membrane|membrane fraction	1-phosphatidylinositol binding|calmodulin binding|GTP-dependent protein binding|protein homodimerization activity|zinc ion binding			ovary(2)|skin(1)	3						CTAGTAATGAAATATTTTCTTTACTCTTCTGTAATAAAGCTT	0.329													12	41	---	---	---	---					
ADAM6	8755	broad.mit.edu	37	14	106774086	106774087	+	Splice_Site	INS	-	AGTAATACACGGCA	AGTAATACACGGCA			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr14:106774086_106774087insAGTAATACACGGCA	uc010tyt.1	-	430		c.15674_splice	c.e430+1							Parts of antibodies, mostly variable regions.												0						GCCTCTTGCACGTGTCCTCAGC	0.550													5	7	---	---	---	---					
GCC2	9648	broad.mit.edu	37	2	109087883	109087884	+	Frame_Shift_Ins	INS	-	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr2:109087883_109087884insA	uc002tec.2	+	6	2252_2253	c.2098_2099insA	c.(2098-2100)GAAfs	p.E700fs	GCC2_uc002ted.2_Frame_Shift_Ins_p.E599fs	NM_181453	NP_852118	Q8IWJ2	GCC2_HUMAN	GRIP and coiled-coil domain-containing 2	700	Potential.				Golgi ribbon formation|late endosome to Golgi transport|microtubule anchoring|microtubule organizing center organization|protein localization in Golgi apparatus|protein targeting to lysosome|recycling endosome to Golgi transport|regulation of protein exit from endoplasmic reticulum	membrane|trans-Golgi network	identical protein binding			ovary(1)	1						ACTCAGTTCAGAAAAAAAACAG	0.307													7	376	---	---	---	---					
C21orf99	149992	broad.mit.edu	37	21	14439225	14439226	+	RNA	INS	-	A	A			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr21:14439225_14439226insA	uc002yja.3	+	10		c.2743_2744insA				NR_026916				Homo sapiens C21orf99 protein (C21orf99) mRNA, complete cds.												0						TATATTAAATGAAAAATTAGGG	0.287													7	45	---	---	---	---					
CHST13	166012	broad.mit.edu	37	3	126261331	126261331	+	Frame_Shift_Del	DEL	C	-	-			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr3:126261331delC	uc003eja.2	+	3	936	c.936delC	c.(934-936)AGCfs	p.S312fs		NM_152889	NP_690849	Q8NET6	CHSTD_HUMAN	carbohydrate sulfotransferase 13	312	Lumenal (Potential).				chondroitin sulfate biosynthetic process	Golgi membrane|integral to membrane	chondroitin 4-sulfotransferase activity|N-acetylgalactosamine 4-O-sulfotransferase activity			central_nervous_system(1)	1				GBM - Glioblastoma multiforme(114;0.151)		GGGACATCAGCCCCTTCTACC	0.552													2	4	---	---	---	---					
RAPGEF6	51735	broad.mit.edu	37	5	130788794	130788794	+	Frame_Shift_Del	DEL	A	-	-			TCGA-D3-A1Q6-06A-11D-A196-08	TCGA-D3-A1Q6-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	fabc319f-0fa7-456f-b706-54c4df7bcbc2	bb924d86-b966-49a7-bba2-a0d97bd905d5	g.chr5:130788794delA	uc003kvn.1	-	21	3359	c.3153delT	c.(3151-3153)GTTfs	p.V1051fs	RAPGEF6_uc003kvp.1_Frame_Shift_Del_p.V1101fs|RAPGEF6_uc003kvo.1_Frame_Shift_Del_p.V1056fs|RAPGEF6_uc010jdi.1_Frame_Shift_Del_p.V1051fs|RAPGEF6_uc010jdj.1_Frame_Shift_Del_p.V1051fs|RAPGEF6_uc003kvq.2_Frame_Shift_Del_p.V768fs|RAPGEF6_uc003kvr.2_Frame_Shift_Del_p.V1051fs|RAPGEF6_uc011cxe.1_RNA	NM_016340	NP_057424	Q8TEU7	RPGF6_HUMAN	PDZ domain-containing guanine nucleotide	1051	Ras-GEF.				Ras protein signal transduction|regulation of GTPase activity|regulation of small GTPase mediated signal transduction	cytoplasm|plasma membrane	GTP-dependent protein binding|guanyl-nucleotide exchange factor activity|Ras GTPase binding			ovary(1)|lung(1)|central_nervous_system(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	Lung(113;0.0721)		AAGTCATTCGAACAACTTGGC	0.353													13	71	---	---	---	---					
