Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
GPR153	387509	broad.mit.edu	37	1	6314610	6314611	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-D3-A2JB-06A-11D-A196-08	TCGA-D3-A2JB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1d485de5-b864-412e-9632-01486f9c3f71	a3e70dee-f653-4d31-94ca-12ec9def742e	g.chr1:6314610_6314611CG>AT	uc001amp.1	-	2	615_616	c.355_356CG>AT	c.(355-357)CGG>ATG	p.R119M		NM_207370	NP_997253	Q6NV75	GP153_HUMAN	G protein-coupled receptor 153	119	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity				0	Ovarian(185;0.0634)	all_cancers(23;8.07e-33)|all_epithelial(116;4.45e-18)|all_lung(118;1.09e-06)|all_neural(13;3.68e-06)|Lung NSC(185;1.52e-05)|all_hematologic(16;2.39e-05)|Acute lymphoblastic leukemia(12;0.000372)|Glioma(11;0.00127)|Renal(390;0.00188)|Colorectal(325;0.00342)|Breast(487;0.00475)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.15)		Epithelial(90;1.91e-37)|GBM - Glioblastoma multiforme(13;4.87e-29)|OV - Ovarian serous cystadenocarcinoma(86;3.03e-19)|Colorectal(212;1.33e-07)|COAD - Colon adenocarcinoma(227;1.36e-05)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000911)|BRCA - Breast invasive adenocarcinoma(365;0.00109)|STAD - Stomach adenocarcinoma(132;0.00313)|READ - Rectum adenocarcinoma(331;0.0642)|Lung(427;0.246)		ACATGCTCACCGGTAGTTGACA	0.559000													9	273					0	0	6.4e-05	0	0
CELSR2	1952	broad.mit.edu	37	1	109813642	109813643	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-D3-A2JB-06A-11D-A196-08	TCGA-D3-A2JB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1d485de5-b864-412e-9632-01486f9c3f71	a3e70dee-f653-4d31-94ca-12ec9def742e	g.chr1:109813642_109813643CG>AT	uc001dxa.3	+	25	7638_7639	c.7577_7578CG>AT	c.(7576-7578)CCG>CAT	p.P2526H		NM_001408	NP_001399	Q9HCU4	CELR2_HUMAN	cadherin EGF LAG seven-pass G-type receptor 2	2526	Helical; Name=5; (Potential).				dendrite morphogenesis|homophilic cell adhesion|neural plate anterior/posterior regionalization|neuropeptide signaling pathway|regulation of cell-cell adhesion|regulation of transcription, DNA-dependent|Wnt receptor signaling pathway	cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(4)|lung(3)|skin(1)	8		all_epithelial(167;0.000114)|all_lung(203;0.000321)|Lung NSC(277;0.000626)|Breast(1374;0.244)		Colorectal(144;0.0296)|Lung(183;0.067)|COAD - Colon adenocarcinoma(174;0.114)|Epithelial(280;0.193)|all cancers(265;0.219)		TTTGCTGGCCCGGTGGCCTTTG	0.644000													11	461					0	0	6.4e-05	0	0
ADAM30	11085	broad.mit.edu	37	1	120438704	120438705	+	Silent	DNP	GG	TT	TT			TCGA-D3-A2JB-06A-11D-A196-08	TCGA-D3-A2JB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1d485de5-b864-412e-9632-01486f9c3f71	a3e70dee-f653-4d31-94ca-12ec9def742e	g.chr1:120438704_120438705GG>TT	uc001eij.2	-	1	409_410	c.255_256CC>AA	c.(253-258)CCCCGA>CCAAGA	p.85_86PR>PR		NM_021794	NP_068566	Q9UKF2	ADA30_HUMAN	ADAM metallopeptidase domain 30 preproprotein	85_86					proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			ovary(2)|lung(1)	3	all_cancers(5;7.07e-10)|all_epithelial(5;1.62e-10)|all_neural(166;0.153)|Breast(55;0.234)	all_lung(203;1.55e-06)|Lung NSC(69;1.04e-05)|all_epithelial(167;0.00138)		Lung(183;0.0204)|LUSC - Lung squamous cell carcinoma(189;0.117)		CGCAGATGTCGGGGCAACAGAA	0.535000													22	827					0	0	6.4e-05	0	0
NBPF9	400818	broad.mit.edu	37	1	144828688	144828688	+	Silent	SNP	C	T	T			TCGA-D3-A2JB-06A-11D-A196-08	TCGA-D3-A2JB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1d485de5-b864-412e-9632-01486f9c3f71	a3e70dee-f653-4d31-94ca-12ec9def742e	g.chr1:144828688C>T	uc009wig.1	+	23	2809	c.2733C>T	c.(2731-2733)CAC>CAT	p.H911H	NBPF9_uc010oxn.1_Silent_p.H809H|NBPF9_uc010oxo.1_Silent_p.H836H|NBPF9_uc010oxr.1_Silent_p.H938H|NBPF9_uc010oxt.1_Silent_p.H726H|NBPF9_uc001ekg.1_Silent_p.H238H|NBPF9_uc001ekk.1_Silent_p.H482H|NBPF10_uc009wir.2_Intron|NBPF9_uc010oyd.1_Silent_p.H238H|NBPF9_uc010oye.1_Intron|NBPF9_uc001eli.3_RNA|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|NBPF9_uc001elp.2_Silent_p.H571H|uc001elr.3_5'Flank	NM_001037675	NP_001032764	Q3BBV1	NBPFK_HUMAN	hypothetical protein LOC400818	911	NBPF 7.					cytoplasm					0						AGGAACAGCACATCAGCTTCG	0.433000													30	37					0	0	3.70037e-05	0	0
KDM5B	10765	broad.mit.edu	37	1	202736112	202736112	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A2JB-06A-11D-A196-08	TCGA-D3-A2JB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1d485de5-b864-412e-9632-01486f9c3f71	a3e70dee-f653-4d31-94ca-12ec9def742e	g.chr1:202736112G>C	uc001gyf.2	-	5	769	c.653C>G	c.(652-654)TCT>TGT	p.S218C	KDM5B_uc009xag.2_Missense_Mutation_p.S218C|KDM5B_uc001gyg.1_Missense_Mutation_p.S60C	NM_006618	NP_006609	Q9UGL1	KDM5B_HUMAN	jumonji, AT rich interactive domain 1B	218					negative regulation of transcription, DNA-dependent	nucleolus	DNA binding|histone demethylase activity (H3-dimethyl-K4 specific)|histone demethylase activity (H3-trimethyl-K4 specific)|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			ovary(2)|breast(2)|urinary_tract(1)	5						AGGCTGCACAGACTGCCTCTG	0.483000													5	34					0	0	3.59834e-05	0	0
PTPN14	5784	broad.mit.edu	37	1	214557734	214557735	+	Missense_Mutation	DNP	CG	AT	AT	rs144475962		TCGA-D3-A2JB-06A-11D-A196-08	TCGA-D3-A2JB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1d485de5-b864-412e-9632-01486f9c3f71	a3e70dee-f653-4d31-94ca-12ec9def742e	g.chr1:214557734_214557735CG>AT	uc001hkk.1	-	13	1734_1735	c.1463_1464CG>AT	c.(1462-1464)CCG>CAT	p.P488H	PTPN14_uc010pty.1_Missense_Mutation_p.P389H	NM_005401	NP_005392	Q15678	PTN14_HUMAN	protein tyrosine phosphatase, non-receptor type	488					lymphangiogenesis	cytoplasm|cytoskeleton	protein tyrosine phosphatase activity|receptor tyrosine kinase binding			breast(2)|ovary(1)|kidney(1)|skin(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.00181)|all cancers(67;0.00194)|Epithelial(68;0.0157)|GBM - Glioblastoma multiforme(131;0.155)		CCCGCATCTCCGGTTGGCTGTA	0.535000													12	430					0	0	6.4e-05	0	0
DNAJB12	54788	broad.mit.edu	37	10	74114714	74114714	+	Missense_Mutation	SNP	A	C	C			TCGA-D3-A2JB-06A-11D-A196-08	TCGA-D3-A2JB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1d485de5-b864-412e-9632-01486f9c3f71	a3e70dee-f653-4d31-94ca-12ec9def742e	g.chr10:74114714A>C	uc010qjv.1	-	1	194	c.44T>G	c.(43-45)GTG>GGG	p.V15G	DNAJB12_uc001jsz.2_Missense_Mutation_p.V15G|DNAJB12_uc001jta.2_Missense_Mutation_p.V15G	NM_017626	NP_060096	Q9NXW2	DJB12_HUMAN	DnaJ (Hsp40) homolog, subfamily B, member 12	Error:Variant_position_missing_in_Q9NXW2_after_alignment					protein folding	endoplasmic reticulum|integral to membrane	heat shock protein binding|unfolded protein binding				0						GGGCTGCGCCACCCGCCGGCG	0.662000													14	41					0	0	7.16444e-05	0	0
POLR3A	11128	broad.mit.edu	37	10	79741973	79741973	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A2JB-06A-11D-A196-08	TCGA-D3-A2JB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1d485de5-b864-412e-9632-01486f9c3f71	a3e70dee-f653-4d31-94ca-12ec9def742e	g.chr10:79741973C>G	uc001jzn.2	-	28	3792	c.3698G>C	c.(3697-3699)CGG>CCG	p.R1233P		NM_007055	NP_008986	O14802	RPC1_HUMAN	polymerase (RNA) III (DNA directed) polypeptide	1233					innate immune response|positive regulation of interferon-beta production|response to virus|termination of RNA polymerase III transcription|transcription elongation from RNA polymerase III promoter	DNA-directed RNA polymerase III complex	DNA binding|DNA-directed RNA polymerase activity|ribonucleoside binding|zinc ion binding				0	all_cancers(46;0.0356)|all_epithelial(25;0.00102)|Breast(12;0.00124)|Prostate(51;0.0095)		Epithelial(14;0.00161)|OV - Ovarian serous cystadenocarcinoma(4;0.00323)|all cancers(16;0.00646)			CATGACTGCCCGCAGGTTATC	0.567000													3	49					0	0	6.4e-05	0	0
CSNK2A1P	283106	broad.mit.edu	37	11	11374269	11374269	+	Missense_Mutation	SNP	A	G	G	rs2071460	by1000genomes	TCGA-D3-A2JB-06A-11D-A196-08	TCGA-D3-A2JB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1d485de5-b864-412e-9632-01486f9c3f71	a3e70dee-f653-4d31-94ca-12ec9def742e	g.chr11:11374269A>G	uc001mjp.2	-	1	636	c.398T>C	c.(397-399)ATT>ACT	p.I133T	GALNTL4_uc001mjo.2_Intron	NM_177559	NP_808227			casein kinase II alpha 1 subunit isoform a												0						GTAAAATCGAATATCATAGTC	0.408000													3	33					0	0	6.4e-05	0	0
MRPL16	54948	broad.mit.edu	37	11	59575225	59575226	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A2JB-06A-11D-A196-08	TCGA-D3-A2JB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1d485de5-b864-412e-9632-01486f9c3f71	a3e70dee-f653-4d31-94ca-12ec9def742e	g.chr11:59575225_59575226CC>AA	uc001noh.2	-	3	432_433	c.218_219GG>TT	c.(217-219)CGG>CTT	p.R73L		NM_017840	NP_060310	Q9NX20	RM16_HUMAN	mitochondrial ribosomal protein L16 precursor	73							rRNA binding			central_nervous_system(1)	1						TGGAAGGTCCCCGTATGTCACT	0.411000													11	377					0	0	6.4e-05	0	0
DGAT2	84649	broad.mit.edu	37	11	75480152	75480152	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JB-06A-11D-A196-08	TCGA-D3-A2JB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1d485de5-b864-412e-9632-01486f9c3f71	a3e70dee-f653-4d31-94ca-12ec9def742e	g.chr11:75480152G>A	uc001oxa.2	+	1	375	c.116G>A	c.(115-117)AGA>AAA	p.R39K	DGAT2_uc001oxb.2_Missense_Mutation_p.R39K|uc001owz.2_5'Flank	NM_032564	NP_115953	Q96PD7	DGAT2_HUMAN	diacylglycerol O-acyltransferase 2	39	Cytoplasmic (Potential).				glycerol metabolic process|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane	diacylglycerol O-acyltransferase activity				0	Ovarian(111;0.103)					GGGTCTGGGAGATGGGGTGAG	0.667000													42	280					0	0	0.000147903	0	0
ERC1	23085	broad.mit.edu	37	12	1137146	1137146	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JB-06A-11D-A196-08	TCGA-D3-A2JB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1d485de5-b864-412e-9632-01486f9c3f71	a3e70dee-f653-4d31-94ca-12ec9def742e	g.chr12:1137146G>A	uc001qjb.2	+	2	318	c.77G>A	c.(76-78)CGT>CAT	p.R26H	ERC1_uc001qiz.2_RNA|ERC1_uc001qjc.2_Missense_Mutation_p.R26H|ERC1_uc001qja.2_RNA|ERC1_uc001qjd.2_RNA|ERC1_uc001qjf.2_Missense_Mutation_p.R26H	NM_178040	NP_829884	Q8IUD2	RB6I2_HUMAN	RAB6-interacting protein 2 isoform epsilon	26					I-kappaB phosphorylation|multicellular organismal development|positive regulation of anti-apoptosis|positive regulation of NF-kappaB transcription factor activity|protein transport	Golgi membrane|IkappaB kinase complex|presynaptic membrane	leucine zipper domain binding			ovary(2)|lung(2)|breast(1)	5	all_epithelial(11;0.0698)|Ovarian(42;0.107)		OV - Ovarian serous cystadenocarcinoma(31;0.00239)|BRCA - Breast invasive adenocarcinoma(9;0.0567)			AGGCTTCCACGTTCCCCTCGC	0.572000													7	48					0	0	1.12685e-05	0	0
RILPL2	196383	broad.mit.edu	37	12	123900452	123900453	+	Missense_Mutation	DNP	CC	AA	AA	rs143775343		TCGA-D3-A2JB-06A-11D-A196-08	TCGA-D3-A2JB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1d485de5-b864-412e-9632-01486f9c3f71	a3e70dee-f653-4d31-94ca-12ec9def742e	g.chr12:123900452_123900453CC>AA	uc001uey.1	-	4	918_919	c.621_622GG>TT	c.(619-624)TCGGGG>TCTTGG	p.G208W		NM_145058	NP_659495	Q969X0	RIPL2_HUMAN	Rab interacting lysosomal protein-like 2	208						cytosol|plasma membrane	identical protein binding				0	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000546)|Epithelial(86;0.00179)|all cancers(50;0.0168)		GTCTGTTTCCCCGATCGAAAAA	0.500000													12	415					0	0	6.4e-05	0	0
NBEA	26960	broad.mit.edu	37	13	35517131	35517132	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A2JB-06A-11D-A196-08	TCGA-D3-A2JB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1d485de5-b864-412e-9632-01486f9c3f71	a3e70dee-f653-4d31-94ca-12ec9def742e	g.chr13:35517131_35517132GG>TT	uc001uvb.2	+	2	380_381	c.174_175GG>TT	c.(172-177)GCGGGG>GCTTGG	p.G59W		NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	59						cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		TGCTCCCCGCGGGGATGATTAA	0.460000													5	79					0	0	6.4e-05	0	0
PARP2	10038	broad.mit.edu	37	14	20813596	20813596	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A2JB-06A-11D-A196-08	TCGA-D3-A2JB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1d485de5-b864-412e-9632-01486f9c3f71	a3e70dee-f653-4d31-94ca-12ec9def742e	g.chr14:20813596C>G	uc001vxc.2	+	3	313	c.285C>G	c.(283-285)GAC>GAG	p.D95E	RPPH1_uc001vxa.1_5'Flank|PARP2_uc001vxd.2_Missense_Mutation_p.D82E|PARP2_uc001vxb.1_Missense_Mutation_p.D95E	NM_005484	NP_005475	Q9UGN5	PARP2_HUMAN	poly (ADP-ribose) polymerase family, member 2	95					protein ADP-ribosylation	nucleolus|nucleoplasm	DNA binding|NAD+ ADP-ribosyltransferase activity	p.D46D(1)		ovary(1)|pancreas(1)	2	all_cancers(95;0.00092)	all_lung(585;0.235)	Epithelial(56;5.34e-07)|all cancers(55;3.7e-06)	GBM - Glioblastoma multiforme(265;0.00888)|READ - Rectum adenocarcinoma(17;0.0649)		CTCCTGTGGACCCAGAGTGTA	0.463000								Direct_reversal_of_damage|PARP_enzymes_that_bind_to_DNA					7	98					0	0	1.12685e-05	0	0
SLC39A9	55334	broad.mit.edu	37	14	69922518	69922518	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A2JB-06A-11D-A196-08	TCGA-D3-A2JB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1d485de5-b864-412e-9632-01486f9c3f71	a3e70dee-f653-4d31-94ca-12ec9def742e	g.chr14:69922518C>G	uc001xle.2	+	6	1308	c.628C>G	c.(628-630)CAC>GAC	p.H210D	SLC39A9_uc010aqx.2_Missense_Mutation_p.H187D|SLC39A9_uc001xlf.3_Missense_Mutation_p.H210D|SLC39A9_uc001xlg.3_RNA	NM_018375	NP_060845	Q9NUM3	S39A9_HUMAN	solute carrier family 39 (zinc transporter),	210	Helical; (Potential).				zinc ion transport	integral to membrane	metal ion transmembrane transporter activity				0				all cancers(60;0.00299)|BRCA - Breast invasive adenocarcinoma(234;0.0145)|OV - Ovarian serous cystadenocarcinoma(108;0.0373)		AATCAGAAAGCACTTGCTGGT	0.428000													7	36					0	0	8.12818e-05	0	0
ISL2	64843	broad.mit.edu	37	15	76629257	76629258	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A2JB-06A-11D-A196-08	TCGA-D3-A2JB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1d485de5-b864-412e-9632-01486f9c3f71	a3e70dee-f653-4d31-94ca-12ec9def742e	g.chr15:76629257_76629258GG>TT	uc002bbw.1	+	1	111_112	c.33_34GG>TT	c.(31-36)CTGGGT>CTTTGT	p.G12C		NM_145805	NP_665804	Q96A47	ISL2_HUMAN	ISL LIM homeobox 2	12						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						ATCCTTTTCTGGGTGCTATGGG	0.470000													14	680					0	0	6.4e-05	0	0
POLG	5428	broad.mit.edu	37	15	89872271	89872271	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A2JB-06A-11D-A196-08	TCGA-D3-A2JB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1d485de5-b864-412e-9632-01486f9c3f71	a3e70dee-f653-4d31-94ca-12ec9def742e	g.chr15:89872271C>A	uc002bns.3	-	4	1208	c.926G>T	c.(925-927)CGC>CTC	p.R309L	POLG_uc002bnr.3_Missense_Mutation_p.R309L	NM_002693	NP_002684	P54098	DPOG1_HUMAN	DNA-directed DNA polymerase gamma	309			R -> L (in PEOB).		base-excision repair, gap-filling|cell death|DNA-dependent DNA replication	mitochondrial nucleoid	DNA binding|DNA-directed DNA polymerase activity|protease binding			ovary(1)|lung(1)	2	Lung NSC(78;0.0472)|all_lung(78;0.089)		STAD - Stomach adenocarcinoma(125;0.165)			CCACAGACTGCGCTGGAAGCT	0.512000								DNA_polymerases_(catalytic_subunits)					5	58					3.59834e-05	0.00345339	3.59834e-05	1	0
UNC45A	55898	broad.mit.edu	37	15	91486257	91486258	+	Silent	DNP	CC	AA	AA	rs79580307	byFrequency	TCGA-D3-A2JB-06A-11D-A196-08	TCGA-D3-A2JB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1d485de5-b864-412e-9632-01486f9c3f71	a3e70dee-f653-4d31-94ca-12ec9def742e	g.chr15:91486257_91486258CC>AA	uc002bqg.2	+	8	1312_1313	c.972_973CC>AA	c.(970-975)CCCCGG>CCAAGG	p.324_325PR>PR	UNC45A_uc002bqd.2_Silent_p.309_310PR>PR	NM_018671	NP_061141	Q9H3U1	UN45A_HUMAN	smooth muscle cell associated protein-1 isoform	324_325					cell differentiation|muscle organ development	nucleus|perinuclear region of cytoplasm	protein binding			ovary(2)	2	Lung NSC(78;0.0771)|all_lung(78;0.137)		Lung(145;0.189)			AAGCGGTGCCCCGGAAGTCTCT	0.530000													14	663					0	0	6.4e-05	0	0
KDM6B	23135	broad.mit.edu	37	17	7750643	7750643	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JB-06A-11D-A196-08	TCGA-D3-A2JB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1d485de5-b864-412e-9632-01486f9c3f71	a3e70dee-f653-4d31-94ca-12ec9def742e	g.chr17:7750643C>T	uc002giw.1	+	10	1506	c.1130C>T	c.(1129-1131)GCA>GTA	p.A377V	KDM6B_uc002gix.2_5'Flank	NM_001080424	NP_001073893	O15054	KDM6B_HUMAN	lysine (K)-specific demethylase 6B	377	Pro-rich.				inflammatory response	nucleus	metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			central_nervous_system(1)|pancreas(1)	2						GTTTCACCAGCAGCAACCACC	0.577000													42	244					0	0	8.96297e-05	0	0
ACLY	47	broad.mit.edu	37	17	40025296	40025297	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-D3-A2JB-06A-11D-A196-08	TCGA-D3-A2JB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1d485de5-b864-412e-9632-01486f9c3f71	a3e70dee-f653-4d31-94ca-12ec9def742e	g.chr17:40025296_40025297CG>AT	uc002hyg.2	-	27	3296_3297	c.3133_3134CG>AT	c.(3133-3135)CGG>ATG	p.R1045M	ACLY_uc002hyh.2_Missense_Mutation_p.R1035M|ACLY_uc002hyi.2_Missense_Mutation_p.R1099M|ACLY_uc010wfx.1_Missense_Mutation_p.R1089M|ACLY_uc010wfy.1_Missense_Mutation_p.R774M	NM_001096	NP_001087	P53396	ACLY_HUMAN	ATP citrate lyase isoform 1	1045					ATP catabolic process|cellular carbohydrate metabolic process|citrate metabolic process|coenzyme A metabolic process|energy reserve metabolic process|long-chain fatty-acyl-CoA biosynthetic process|positive regulation of cellular metabolic process|triglyceride biosynthetic process	citrate lyase complex|cytosol|nucleus	ATP binding|ATP citrate synthase activity|citrate (pro-3S)-lyase activity|metal ion binding|protein binding|succinate-CoA ligase (ADP-forming) activity			ovary(2)|central_nervous_system(1)	3		Breast(137;0.000143)				CAATGCTCACCGAGTAAAGGAC	0.297000													20	370					0	0	6.4e-05	0	0
CYP4F8	11283	broad.mit.edu	37	19	15739340	15739341	+	Splice_Site	DNP	GG	TT	TT			TCGA-D3-A2JB-06A-11D-A196-08	TCGA-D3-A2JB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1d485de5-b864-412e-9632-01486f9c3f71	a3e70dee-f653-4d31-94ca-12ec9def742e	g.chr19:15739340_15739341GG>TT	uc002nbi.2	+	13	1314	c.1250_splice	c.e13-1	p.G417_splice	CYP4F8_uc010xoj.1_Splice_Site_p.G229_splice	NM_007253	NP_009184	P98187	CP4F8_HUMAN	cytochrome P450, family 4, subfamily F,						prostaglandin metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	alkane 1-monooxygenase activity|aromatase activity|electron carrier activity|heme binding|oxygen binding|protein binding			large_intestine(1)	1						CTGCACGACAGGGAATGTCTGT	0.614000													15	315					0	0	6.4e-05	0	0
TMEM147	10430	broad.mit.edu	37	19	36036834	36036834	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A2JB-06A-11D-A196-08	TCGA-D3-A2JB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1d485de5-b864-412e-9632-01486f9c3f71	a3e70dee-f653-4d31-94ca-12ec9def742e	g.chr19:36036834C>A	uc002oaj.1	+	2	219	c.122C>A	c.(121-123)ACC>AAC	p.T41N	uc010eec.1_5'Flank|uc002oag.2_Intron|TMEM147_uc002oai.1_5'UTR|TMEM147_uc002oak.1_5'UTR	NM_032635	NP_116024	Q9BVK8	TM147_HUMAN	transmembrane protein 147	41	Helical; (Potential).					endoplasmic reticulum membrane|integral to membrane	protein binding				0	all_lung(56;1.05e-07)|Lung NSC(56;1.63e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0724)			GCTGGAGTCACCTACCTCTTT	0.527000													5	38					1.23904e-05	0.00120612	1.23904e-05	1	0
HIPK4	147746	broad.mit.edu	37	19	40895711	40895711	+	Silent	SNP	C	G	G			TCGA-D3-A2JB-06A-11D-A196-08	TCGA-D3-A2JB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1d485de5-b864-412e-9632-01486f9c3f71	a3e70dee-f653-4d31-94ca-12ec9def742e	g.chr19:40895711C>G	uc002onp.2	-	1	384	c.99G>C	c.(97-99)ACG>ACC	p.T33T		NM_144685	NP_653286	Q8NE63	HIPK4_HUMAN	homeodomain interacting protein kinase 4	33	Protein kinase.					cytoplasm	ATP binding|protein serine/threonine kinase activity			ovary(1)|stomach(1)	2			Lung(22;4.95e-05)|LUSC - Lung squamous cell carcinoma(20;0.000292)			CCATCTCGCCCGTGCTCCGCC	0.602000													4	166					0	0	0.00024832	0	0
ZNF331	55422	broad.mit.edu	37	19	54079984	54079984	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A2JB-06A-11D-A196-08	TCGA-D3-A2JB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1d485de5-b864-412e-9632-01486f9c3f71	a3e70dee-f653-4d31-94ca-12ec9def742e	g.chr19:54079984C>G	uc002qbx.1	+	7	1604	c.170C>G	c.(169-171)CCT>CGT	p.P57R	ZNF331_uc002qby.1_Missense_Mutation_p.P57R|ZNF331_uc002qbz.1_Missense_Mutation_p.P57R|ZNF331_uc002qca.1_Missense_Mutation_p.P57R|ZNF331_uc010eqr.1_Missense_Mutation_p.P57R|ZNF331_uc002qcb.1_Missense_Mutation_p.P57R|ZNF331_uc002qcc.1_Missense_Mutation_p.P57R|ZNF331_uc002qcd.1_Missense_Mutation_p.P57R	NM_018555	NP_061025	Q9NQX6	ZN331_HUMAN	zinc finger protein 331	57	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(3)|upper_aerodigestive_tract(1)|ovary(1)|lung(1)	6				GBM - Glioblastoma multiforme(134;0.00555)		AAGAGTTTACCTACAGAAAAA	0.363000			T	?	follicular thyroid adenoma								3	47					0	0	0.00024832	0	0
APOB	338	broad.mit.edu	37	2	21260932	21260933	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-D3-A2JB-06A-11D-A196-08	TCGA-D3-A2JB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1d485de5-b864-412e-9632-01486f9c3f71	a3e70dee-f653-4d31-94ca-12ec9def742e	g.chr2:21260932_21260933CG>AT	uc002red.2	-	5	562_563	c.434_435CG>AT	c.(433-435)CCG>CAT	p.P145H		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	145	Vitellogenin.				cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	CATCTTTCTCCGGGTAAAGGAA	0.490000													11	461					0	0	6.4e-05	0	0
PIKFYVE	200576	broad.mit.edu	37	2	209212720	209212720	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A2JB-06A-11D-A196-08	TCGA-D3-A2JB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1d485de5-b864-412e-9632-01486f9c3f71	a3e70dee-f653-4d31-94ca-12ec9def742e	g.chr2:209212720A>G	uc002vcz.2	+	35	5505	c.5347A>G	c.(5347-5349)ACC>GCC	p.T1783A		NM_015040	NP_055855	Q9Y2I7	FYV1_HUMAN	phosphatidylinositol-3-phosphate 5-kinase type	1783	PIPK.				cellular protein metabolic process|intracellular signal transduction|protein localization to nucleus|retrograde transport, endosome to Golgi	early endosome membrane|membrane raft	1-phosphatidylinositol-3-phosphate 5-kinase activity|1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding|metal ion binding|protein binding			ovary(5)|kidney(2)|pancreas(1)|central_nervous_system(1)|skin(1)	10						CAAGGAGGGGACCGAGAATCA	0.443000													4	76					0	0	1.23904e-05	0	0
HDAC4	9759	broad.mit.edu	37	2	240098156	240098157	+	Missense_Mutation	DNP	CG	AT	AT	rs140596122		TCGA-D3-A2JB-06A-11D-A196-08	TCGA-D3-A2JB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1d485de5-b864-412e-9632-01486f9c3f71	a3e70dee-f653-4d31-94ca-12ec9def742e	g.chr2:240098156_240098157CG>AT	uc002vyk.3	-	5	1234_1235	c.442_443CG>AT	c.(442-444)CGG>ATG	p.R148M	HDAC4_uc010fyz.1_Missense_Mutation_p.R143M|HDAC4_uc010zoa.1_Missense_Mutation_p.R143M|HDAC4_uc010fza.2_Missense_Mutation_p.R148M|HDAC4_uc010fyy.2_Missense_Mutation_p.R100M|HDAC4_uc010znz.1_Missense_Mutation_p.R31M	NM_006037	NP_006028	P56524	HDAC4_HUMAN	histone deacetylase 4	148	Interaction with MEF2A.|Potential.				B cell differentiation|cardiac muscle hypertrophy in response to stress|chromatin remodeling|histone H3 deacetylation|histone H4 deacetylation|inflammatory response|negative regulation of glycolysis|negative regulation of myotube differentiation|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|nervous system development|peptidyl-lysine deacetylation|positive regulation of cell proliferation|positive regulation of protein sumoylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of protein binding|response to denervation involved in regulation of muscle adaptation|response to interleukin-1|transcription, DNA-dependent	histone deacetylase complex|transcriptional repressor complex	activating transcription factor binding|histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|potassium ion binding|repressing transcription factor binding|zinc ion binding			breast(3)|skin(2)|ovary(1)	6		all_epithelial(40;1.45e-17)|Breast(86;1.53e-05)|Renal(207;0.000355)|all_lung(227;0.0121)|Ovarian(221;0.0183)|Lung NSC(271;0.0413)|Melanoma(123;0.0749)|all_hematologic(139;0.159)		Epithelial(121;6.38e-25)|OV - Ovarian serous cystadenocarcinoma(60;2.48e-12)|Kidney(56;6.04e-08)|KIRC - Kidney renal clear cell carcinoma(57;1.18e-06)|BRCA - Breast invasive adenocarcinoma(100;3.99e-05)|Lung(119;0.00942)|LUSC - Lung squamous cell carcinoma(224;0.04)		cttctgctcccggtgctgcttc	0.153000													8	315					0	0	6.4e-05	0	0
SNED1	25992	broad.mit.edu	37	2	241991873	241991874	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-D3-A2JB-06A-11D-A196-08	TCGA-D3-A2JB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1d485de5-b864-412e-9632-01486f9c3f71	a3e70dee-f653-4d31-94ca-12ec9def742e	g.chr2:241991873_241991874CG>AT	uc002wah.1	+	15	2071_2072	c.2071_2072CG>AT	c.(2071-2073)CGG>ATG	p.R691M		NM_001080437	NP_001073906	Q8TER0	SNED1_HUMAN	6720455I24Rik homolog precursor	691	EGF-like 10.				cell-matrix adhesion	extracellular region	calcium ion binding			breast(1)|central_nervous_system(1)	2		all_cancers(19;7.48e-31)|all_epithelial(40;1.35e-12)|Breast(86;0.000148)|Renal(207;0.00528)|Ovarian(221;0.104)|Esophageal squamous(248;0.131)|all_lung(227;0.17)|all_hematologic(139;0.182)|Melanoma(123;0.238)		Epithelial(32;6.46e-32)|all cancers(36;6.23e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.1e-14)|Kidney(56;6.35e-09)|KIRC - Kidney renal clear cell carcinoma(57;5.98e-08)|BRCA - Breast invasive adenocarcinoma(100;3.66e-06)|Lung(119;0.00072)|LUSC - Lung squamous cell carcinoma(224;0.00553)|Colorectal(34;0.0162)|COAD - Colon adenocarcinoma(134;0.109)		CATGGGACGCCGGTGCCAGGCA	0.644000													6	135					0	0	6.4e-05	0	0
ING5	84289	broad.mit.edu	37	2	242650884	242650885	+	Nonsense_Mutation	DNP	CG	AT	AT	rs142180451	byFrequency	TCGA-D3-A2JB-06A-11D-A196-08	TCGA-D3-A2JB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1d485de5-b864-412e-9632-01486f9c3f71	a3e70dee-f653-4d31-94ca-12ec9def742e	g.chr2:242650884_242650885CG>AT	uc002wcd.2	+	4	394_395	c.369_370CG>AT	c.(367-372)TCCGGA>TCATGA	p.G124*	ING5_uc002wcc.1_Nonsense_Mutation_p.G124*	NM_032329	NP_115705	Q8WYH8	ING5_HUMAN	inhibitor of growth family, member 5	124					DNA replication|histone H3 acetylation|negative regulation of cell proliferation|negative regulation of growth|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MOZ/MORF histone acetyltransferase complex	protein binding|zinc ion binding				0		all_cancers(19;1.09e-40)|all_epithelial(40;2.03e-18)|Breast(86;1.53e-05)|all_lung(227;0.00338)|Renal(207;0.00502)|Ovarian(221;0.00716)|Lung NSC(271;0.012)|Esophageal squamous(248;0.129)|Melanoma(123;0.144)|all_hematologic(139;0.158)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;2.16e-33)|all cancers(36;4.99e-31)|OV - Ovarian serous cystadenocarcinoma(60;3.6e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.65e-06)|Lung(119;0.000152)|LUSC - Lung squamous cell carcinoma(224;0.00154)|Colorectal(34;0.0129)|COAD - Colon adenocarcinoma(134;0.0839)		TTGAAAGCTCCGGAGGGCGAGG	0.391000													8	289					0	0	6.4e-05	0	0
THBD	7056	broad.mit.edu	37	20	23028840	23028840	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A2JB-06A-11D-A196-08	TCGA-D3-A2JB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1d485de5-b864-412e-9632-01486f9c3f71	a3e70dee-f653-4d31-94ca-12ec9def742e	g.chr20:23028840G>T	uc002wss.2	-	1	1462	c.1302C>A	c.(1300-1302)GAC>GAA	p.D434E	THBD_uc002wst.1_5'Flank|THBD_uc002wsu.1_Missense_Mutation_p.D375E	NM_000361	NP_000352	P07204	TRBM_HUMAN	thrombomodulin precursor	434	Extracellular (Potential).|EGF-like 5.				blood coagulation|leukocyte migration|negative regulation of fibrinolysis|negative regulation of platelet activation	cell surface|integral to plasma membrane	calcium ion binding|protein binding|transmembrane receptor activity				0	Colorectal(13;0.0518)|Lung NSC(19;0.0542)|all_lung(19;0.118)				Drotrecogin alfa(DB00055)	TGAAACCGTCGTCCAGGATGT	0.617000													11	86					3.86212e-05	0.00365507	3.86212e-05	1	0
ITCH	83737	broad.mit.edu	37	20	33057911	33057912	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-D3-A2JB-06A-11D-A196-08	TCGA-D3-A2JB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1d485de5-b864-412e-9632-01486f9c3f71	a3e70dee-f653-4d31-94ca-12ec9def742e	g.chr20:33057911_33057912CG>AT	uc010geu.1	+	16	1798_1799	c.1606_1607CG>AT	c.(1606-1608)CGG>ATG	p.R536M	ITCH_uc002xak.2_Missense_Mutation_p.R495M|ITCH_uc010zuj.1_Missense_Mutation_p.R385M	NM_031483	NP_113671	Q96J02	ITCH_HUMAN	itchy homolog E3 ubiquitin protein ligase	536					apoptosis|entry of virus into host cell|inflammatory response|innate immune response|negative regulation of apoptosis|negative regulation of defense response to virus|negative regulation of JNK cascade|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production|protein K29-linked ubiquitination|protein K48-linked ubiquitination|protein K63-linked ubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|regulation of cell growth|regulation of protein deubiquitination|response to virus	cytosol|nucleus|plasma membrane	CXCR chemokine receptor binding|ribonucleoprotein binding|ubiquitin-protein ligase activity			breast(4)|lung(1)|central_nervous_system(1)	6						TCAGTATTTCCGGTTCTGGTGT	0.401000													7	221					0	0	6.4e-05	0	0
C21orf59	56683	broad.mit.edu	37	21	33976511	33976511	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A2JB-06A-11D-A196-08	TCGA-D3-A2JB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1d485de5-b864-412e-9632-01486f9c3f71	a3e70dee-f653-4d31-94ca-12ec9def742e	g.chr21:33976511A>G	uc002yqc.2	-	4	571	c.458T>C	c.(457-459)GTT>GCT	p.V153A	C21orf59_uc002ypx.1_Missense_Mutation_p.V46A|C21orf59_uc002ypy.1_Missense_Mutation_p.V153A|C21orf59_uc002ypz.1_Missense_Mutation_p.V153A|C21orf59_uc010glx.2_Missense_Mutation_p.V54A|C21orf59_uc002yqd.2_Missense_Mutation_p.V153A|C21orf59_uc002yqa.3_Missense_Mutation_p.V34A|C21orf59_uc002yqb.3_Missense_Mutation_p.V153A|C21orf59_uc011adr.1_Missense_Mutation_p.V97A	NM_021254	NP_067077	P57076	CU059_HUMAN	hypothetical protein LOC56683	153						cytosol|nucleus					0						CATGGGGTAAACAATCATCAC	0.502000													24	59					0	0	4.16121e-05	0	0
SLC6A6	6533	broad.mit.edu	37	3	14520642	14520643	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-D3-A2JB-06A-11D-A196-08	TCGA-D3-A2JB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1d485de5-b864-412e-9632-01486f9c3f71	a3e70dee-f653-4d31-94ca-12ec9def742e	g.chr3:14520642_14520643CG>AT	uc010heg.2	+	20	1791_1792	c.1500_1501CG>AT	c.(1498-1503)CCCGGG>CCATGG	p.G501W	SLC6A6_uc003byq.2_Missense_Mutation_p.G501W|SLC6A6_uc003byr.2_RNA	NM_001134367	NP_001127839	P31641	SC6A6_HUMAN	solute carrier family 6 (neurotransmitter	501					cellular amino acid metabolic process	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity|taurine:sodium symporter activity			ovary(1)	1						GCTATCGGCCCGGGCCCTGGAT	0.540000													5	119					0	0	6.4e-05	0	0
TEX264	51368	broad.mit.edu	37	3	51737796	51737797	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-D3-A2JB-06A-11D-A196-08	TCGA-D3-A2JB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1d485de5-b864-412e-9632-01486f9c3f71	a3e70dee-f653-4d31-94ca-12ec9def742e	g.chr3:51737796_51737797CG>AT	uc010hls.2	+	6	875_876	c.706_707CG>AT	c.(706-708)CGG>ATG	p.R236M	TEX264_uc003dbk.3_Missense_Mutation_p.R236M|TEX264_uc010hlt.2_Missense_Mutation_p.R56M|TEX264_uc003dbl.3_Missense_Mutation_p.R236M|TEX264_uc003dbm.3_Missense_Mutation_p.R275M	NM_001129884	NP_001123356	Q9Y6I9	TX264_HUMAN	testis expressed 264 precursor	236						extracellular region					0				BRCA - Breast invasive adenocarcinoma(193;8.53e-05)|Kidney(197;0.000594)|KIRC - Kidney renal clear cell carcinoma(197;0.000759)		CCCTGGCAGCCGGGAGACTTCA	0.604000													7	245					0	0	6.4e-05	0	0
DBR1	51163	broad.mit.edu	37	3	137892381	137892382	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A2JB-06A-11D-A196-08	TCGA-D3-A2JB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1d485de5-b864-412e-9632-01486f9c3f71	a3e70dee-f653-4d31-94ca-12ec9def742e	g.chr3:137892381_137892382GG>TT	uc003erv.2	-	2	420_421	c.284_285CC>AA	c.(283-285)CCC>CAA	p.P95Q	DBR1_uc003eru.2_Missense_Mutation_p.P44Q	NM_016216	NP_057300	Q9UK59	DBR1_HUMAN	debranching enzyme homolog 1	95						nucleus	metal ion binding|RNA lariat debranching enzyme activity				0						AGCCACCATAGGGTAACTCTTG	0.421000													14	758					0	0	6.4e-05	0	0
GYG1	2992	broad.mit.edu	37	3	148714574	148714574	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A2JB-06A-11D-A196-08	TCGA-D3-A2JB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1d485de5-b864-412e-9632-01486f9c3f71	a3e70dee-f653-4d31-94ca-12ec9def742e	g.chr3:148714574G>C	uc003ewn.2	+	4	417	c.364G>C	c.(364-366)GCA>CCA	p.A122P	GYG1_uc011bnp.1_Missense_Mutation_p.A122P|GYG1_uc003ewo.2_Missense_Mutation_p.A122P|GYG1_uc003ewp.2_Missense_Mutation_p.A122P	NM_004130	NP_004121	P46976	GLYG_HUMAN	glycogenin 1	122					glucose metabolic process|glycogen biosynthetic process|glycogen catabolic process	cytosol	glycogenin glucosyltransferase activity|metal ion binding|protein binding			ovary(1)	1			LUSC - Lung squamous cell carcinoma(72;0.0473)|Lung(72;0.0607)			AGAATTGTCAGCAGCACCAGA	0.433000													3	66					0	0	6.4e-05	0	0
DGKQ	1609	broad.mit.edu	37	4	959048	959048	+	Silent	SNP	C	G	G			TCGA-D3-A2JB-06A-11D-A196-08	TCGA-D3-A2JB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1d485de5-b864-412e-9632-01486f9c3f71	a3e70dee-f653-4d31-94ca-12ec9def742e	g.chr4:959048C>G	uc003gbw.2	-	15	1724	c.1650G>C	c.(1648-1650)GCG>GCC	p.A550A	DGKQ_uc010ibn.2_Silent_p.A537A	NM_001347	NP_001338	P52824	DGKQ_HUMAN	diacylglycerol kinase, theta	550					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|platelet activation|protein kinase C signaling cascade|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to ATP|thrombin receptor signaling pathway	cytoskeleton|cytosol|nuclear speck|plasma membrane	activating transcription factor binding|ATP binding|diacylglycerol kinase activity|kinase binding|metal ion binding|phospholipase binding			kidney(1)	1			OV - Ovarian serous cystadenocarcinoma(23;0.0158)			GCTCGGCCTCCGCAAAGCAGG	0.677000													3	73					0	0	6.4e-05	0	0
F2RL1	2150	broad.mit.edu	37	5	76128862	76128863	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A2JB-06A-11D-A196-08	TCGA-D3-A2JB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1d485de5-b864-412e-9632-01486f9c3f71	a3e70dee-f653-4d31-94ca-12ec9def742e	g.chr5:76128862_76128863GG>TT	uc003keo.2	+	2	605_606	c.430_431GG>TT	c.(430-432)GGG>TTG	p.G144L		NM_005242	NP_005233	P55085	PAR2_HUMAN	coagulation factor II (thrombin) receptor-like 1	144	Extracellular (Potential).				blood coagulation|elevation of cytosolic calcium ion concentration|positive regulation of leukocyte chemotaxis|positive regulation of positive chemotaxis|regulation of blood coagulation	Golgi apparatus|integral to plasma membrane	receptor binding|thrombin receptor activity			central_nervous_system(1)	1		all_lung(232;0.000414)|Lung NSC(167;0.0011)|Ovarian(174;0.0129)|Prostate(461;0.11)		OV - Ovarian serous cystadenocarcinoma(54;7.7e-51)|Epithelial(54;2.77e-45)|all cancers(79;3.47e-41)		CTGGATTTATGGGGAAGCTCTT	0.455000													14	564					0	0	6.4e-05	0	0
BAT3	7917	broad.mit.edu	37	6	31616461	31616462	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-D3-A2JB-06A-11D-A196-08	TCGA-D3-A2JB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1d485de5-b864-412e-9632-01486f9c3f71	a3e70dee-f653-4d31-94ca-12ec9def742e	g.chr6:31616461_31616462CG>AT	uc003nvg.3	-	6	858_859	c.544_545CG>AT	c.(544-546)CGG>ATG	p.R182M	BAT3_uc003nvf.3_Missense_Mutation_p.R182M|BAT3_uc003nvh.3_Missense_Mutation_p.R182M|BAT3_uc003nvi.3_Missense_Mutation_p.R182M|BAT3_uc011dnw.1_Missense_Mutation_p.R182M|BAT3_uc011dnx.1_Missense_Mutation_p.R182M|BAT3_uc003nvj.1_Missense_Mutation_p.R182M	NM_004639	NP_004630	P46379	BAG6_HUMAN	HLA-B associated transcript-3 isoform a	182					apoptosis in response to endoplasmic reticulum stress|brain development|cell differentiation|chromatin modification|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|embryo development|internal peptidyl-lysine acetylation|kidney development|lung development|negative regulation of proteasomal ubiquitin-dependent protein catabolic process|protein stabilization|spermatogenesis|synaptonemal complex assembly|tail-anchored membrane protein insertion into ER membrane|transport|ubiquitin-dependent protein catabolic process	BAT3 complex|nucleus	polyubiquitin binding|proteasome binding|ribosome binding				0						TACCTCCATCCGGGATAGTAAG	0.550000													12	557					0	0	6.4e-05	0	0
C2	717	broad.mit.edu	37	6	31903790	31903791	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-D3-A2JB-06A-11D-A196-08	TCGA-D3-A2JB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1d485de5-b864-412e-9632-01486f9c3f71	a3e70dee-f653-4d31-94ca-12ec9def742e	g.chr6:31903790_31903791CG>AT	uc003nyf.2	+	7	1204_1205	c.940_941CG>AT	c.(940-942)CGG>ATG	p.R314M	C2_uc003nyc.2_Missense_Mutation_p.R101M|C2_uc011doo.1_Missense_Mutation_p.R68M|C2_uc011dop.1_Intron|C2_uc010jtk.2_Missense_Mutation_p.R182M|C2_uc011doq.1_Missense_Mutation_p.R285M|C2_uc003nyg.2_Intron|CFB_uc011dor.1_Intron|C2_uc003nyh.1_5'Flank	NM_000063	NP_000054	P06681	CO2_HUMAN	complement component 2 isoform 1 preproprotein	314	VWFA.				complement activation, classical pathway|innate immune response|proteolysis	extracellular space	serine-type endopeptidase activity			ovary(1)|skin(1)	2		Ovarian(999;0.00965)		LUAD - Lung adenocarcinoma(999;0.247)		CGACAACTCCCGGGATATGACT	0.505000													10	546					0	0	6.4e-05	0	0
SKIV2L	6499	broad.mit.edu	37	6	31928102	31928103	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A2JB-06A-11D-A196-08	TCGA-D3-A2JB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1d485de5-b864-412e-9632-01486f9c3f71	a3e70dee-f653-4d31-94ca-12ec9def742e	g.chr6:31928102_31928103GG>TT	uc003nyn.1	+	4	731_732	c.342_343GG>TT	c.(340-345)CTGGGT>CTTTGT	p.G115C	RDBP_uc003nyk.2_5'Flank|RDBP_uc011dot.1_5'Flank|RDBP_uc003nyl.1_5'Flank|RDBP_uc003nym.1_5'Flank|SKIV2L_uc011dou.1_Intron|SKIV2L_uc011dov.1_Intron	NM_006929	NP_008860	Q15477	SKIV2_HUMAN	superkiller viralicidic activity 2-like homolog	115						nucleus	ATP binding|ATP-dependent RNA helicase activity|protein binding|RNA binding			ovary(1)|large_intestine(1)|breast(1)|central_nervous_system(1)	4						GCCAGATACTGGGTTACAAAGA	0.574000													17	685					0	0	6.4e-05	0	0
SKIV2L	6499	broad.mit.edu	37	6	31930283	31930284	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A2JB-06A-11D-A196-08	TCGA-D3-A2JB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1d485de5-b864-412e-9632-01486f9c3f71	a3e70dee-f653-4d31-94ca-12ec9def742e	g.chr6:31930283_31930284GG>TT	uc003nyn.1	+	11	1521_1522	c.1132_1133GG>TT	c.(1132-1134)GGG>TTG	p.G378L	SKIV2L_uc011dou.1_Missense_Mutation_p.G220L|SKIV2L_uc011dov.1_Missense_Mutation_p.G185L	NM_006929	NP_008860	Q15477	SKIV2_HUMAN	superkiller viralicidic activity 2-like homolog	378	Helicase ATP-binding.					nucleus	ATP binding|ATP-dependent RNA helicase activity|protein binding|RNA binding			ovary(1)|large_intestine(1)|breast(1)|central_nervous_system(1)	4						AAACACATTCGGGGATGTGGGG	0.564000													23	820					0	0	6.4e-05	0	0
SKIV2L	6499	broad.mit.edu	37	6	31935527	31935528	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A2JB-06A-11D-A196-08	TCGA-D3-A2JB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1d485de5-b864-412e-9632-01486f9c3f71	a3e70dee-f653-4d31-94ca-12ec9def742e	g.chr6:31935527_31935528CC>AA	uc003nyn.1	+	22	3008_3009	c.2619_2620CC>AA	c.(2617-2622)ACCCTG>ACAATG	p.L874M	SKIV2L_uc011dou.1_Missense_Mutation_p.L716M|SKIV2L_uc011dov.1_Missense_Mutation_p.L681M	NM_006929	NP_008860	Q15477	SKIV2_HUMAN	superkiller viralicidic activity 2-like homolog	874						nucleus	ATP binding|ATP-dependent RNA helicase activity|protein binding|RNA binding			ovary(1)|large_intestine(1)|breast(1)|central_nervous_system(1)	4						TATTCACAACCCTGGTCTTGTG	0.579000													22	867					0	0	6.4e-05	0	0
CYP21A2	1589	broad.mit.edu	37	6	32008243	32008244	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-D3-A2JB-06A-11D-A196-08	TCGA-D3-A2JB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1d485de5-b864-412e-9632-01486f9c3f71	a3e70dee-f653-4d31-94ca-12ec9def742e	g.chr6:32008243_32008244CG>AT	uc003nze.1	+	8	1118_1119	c.1000_1001CG>AT	c.(1000-1002)CGG>ATG	p.R334M	CYP21A2_uc003nzf.1_Missense_Mutation_p.R304M	NM_000500	NP_000491	P08686	CP21A_HUMAN	cytochrome P450, family 21, subfamily A,	333					glucocorticoid biosynthetic process|mineralocorticoid biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	electron carrier activity|heme binding|steroid 21-monooxygenase activity|steroid binding				0						CTCCAGCTCCCGGGTCCCCTAC	0.673000													13	467					0	0	6.4e-05	0	0
PPT2	9374	broad.mit.edu	37	6	32130605	32130606	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A2JB-06A-11D-A196-08	TCGA-D3-A2JB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1d485de5-b864-412e-9632-01486f9c3f71	a3e70dee-f653-4d31-94ca-12ec9def742e	g.chr6:32130605_32130606GG>TT	uc003nzx.2	+	9	1355_1356	c.787_788GG>TT	c.(787-789)GGG>TTG	p.G263L	PPT2_uc003nzw.2_Missense_Mutation_p.G269L|PPT2_uc011dpi.1_Intron|PPT2_uc003nzy.1_Intron|PPT2_uc003nzz.2_Missense_Mutation_p.G263L|PPT2_uc003oaa.2_Missense_Mutation_p.G263L|PPT2_uc010jtu.1_Intron|EGFL8_uc003oac.1_5'Flank|EGFL8_uc003oab.1_5'Flank	NM_005155	NP_005146	Q9UMR5	PPT2_HUMAN	palmitoyl-protein thioesterase 2 isoform a	263					protein modification process	lysosome	palmitoyl-(protein) hydrolase activity				0						GGATTCTTTTGGGTTGAAGACT	0.545000													18	869					0	0	6.4e-05	0	0
AGPAT1	10554	broad.mit.edu	37	6	32137096	32137097	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-D3-A2JB-06A-11D-A196-08	TCGA-D3-A2JB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1d485de5-b864-412e-9632-01486f9c3f71	a3e70dee-f653-4d31-94ca-12ec9def742e	g.chr6:32137096_32137097CG>AT	uc003oae.2	-	7	1126_1127	c.808_809CG>AT	c.(808-810)CGG>ATG	p.R270M	PPT2_uc003nzy.1_RNA|AGPAT1_uc011dpj.1_RNA|AGPAT1_uc011dpk.1_Missense_Mutation_p.R234M|AGPAT1_uc003oaf.2_Missense_Mutation_p.R270M|AGPAT1_uc003oag.2_Missense_Mutation_p.R160M|AGPAT1_uc003oah.2_Missense_Mutation_p.R270M|AGPAT1_uc003oai.1_Missense_Mutation_p.R270M|AGPAT1_uc011dpl.1_Missense_Mutation_p.R158M	NM_006411	NP_006402	Q99943	PLCA_HUMAN	1-acylglycerol-3-phosphate O-acyltransferase 1	270					energy reserve metabolic process|phosphatidic acid biosynthetic process|positive regulation of cellular metabolic process|positive regulation of cytokine production|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane	1-acylglycerol-3-phosphate O-acyltransferase activity			central_nervous_system(1)	1						ACCACCACCCCGGCCATCAGTG	0.609000													15	624					0	0	6.4e-05	0	0
GPSM3	63940	broad.mit.edu	37	6	32159488	32159488	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A2JB-06A-11D-A196-08	TCGA-D3-A2JB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1d485de5-b864-412e-9632-01486f9c3f71	a3e70dee-f653-4d31-94ca-12ec9def742e	g.chr6:32159488G>T	uc003oay.3	-	3	736	c.343C>A	c.(343-345)CAG>AAG	p.Q115K	PBX2_uc003oav.1_5'Flank|PBX2_uc003oaw.2_5'Flank|GPSM3_uc003oax.3_Missense_Mutation_p.Q92K|GPSM3_uc003oaz.2_Missense_Mutation_p.Q115K	NM_022107	NP_071390	Q9Y4H4	GPSM3_HUMAN	G-protein signaling modulator 3 (AGS3-like, C.	115	GoLoco 2.				signal transduction	cytoplasm	GTPase activator activity|protein binding				0						TGTCTTACCTGGTGACTGAGG	0.597000													17	432					5.3912e-06	0.00054023	7.07596e-05	1	0
FTSJD2	23070	broad.mit.edu	37	6	37446287	37446287	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A2JB-06A-11D-A196-08	TCGA-D3-A2JB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1d485de5-b864-412e-9632-01486f9c3f71	a3e70dee-f653-4d31-94ca-12ec9def742e	g.chr6:37446287G>T	uc003ons.2	+	22	2509	c.2256G>T	c.(2254-2256)AGG>AGT	p.R752S		NM_015050	NP_055865	Q8N1G2	MTR1_HUMAN	FtsJ methyltransferase domain containing 2	752	Interaction with POLR2A.|WW.				mRNA capping	cytoplasm|nucleus	mRNA (nucleoside-2'-O-)-methyltransferase activity|nucleic acid binding			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	5						ACATCGTCAGGACAGTGAATG	0.602000													19	141					3.62473e-10	3.68641e-08	0.000229342	1	0
SDK1	221935	broad.mit.edu	37	7	3998595	3998595	+	Silent	SNP	C	A	A			TCGA-D3-A2JB-06A-11D-A196-08	TCGA-D3-A2JB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1d485de5-b864-412e-9632-01486f9c3f71	a3e70dee-f653-4d31-94ca-12ec9def742e	g.chr7:3998595C>A	uc003smx.2	+	8	1322	c.1183C>A	c.(1183-1185)CGG>AGG	p.R395R		NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	395	Ig-like C2-type 4.				cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		GCCCGAGAGTCGGATTTCAGC	0.468000													14	139					9.31168e-06	0.000919562	0.000151284	1	0
TSGA14	95681	broad.mit.edu	37	7	130038854	130038855	+	Nonsense_Mutation	DNP	CG	AT	AT			TCGA-D3-A2JB-06A-11D-A196-08	TCGA-D3-A2JB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1d485de5-b864-412e-9632-01486f9c3f71	a3e70dee-f653-4d31-94ca-12ec9def742e	g.chr7:130038854_130038855CG>AT	uc003vpz.2	-	11	1046_1047	c.999_1000CG>AT	c.(997-1002)TCCGGA>TCATGA	p.G334*	TSGA14_uc003vpy.2_Nonsense_Mutation_p.G96*|TSGA14_uc010lmf.2_Nonsense_Mutation_p.G131*|TSGA14_uc003vqa.2_Nonsense_Mutation_p.G262*|TSGA14_uc011kpg.1_Nonsense_Mutation_p.G246*	NM_018718	NP_061188	Q9BYV8	CEP41_HUMAN	testis specific, 14	334					G2/M transition of mitotic cell cycle	centrosome|cytosol					0	Melanoma(18;0.0435)					GACTCTCTTCCGGAGGAGTTAG	0.574000													9	336					0	0	6.4e-05	0	0
TSGA14	95681	broad.mit.edu	37	7	130067831	130067832	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A2JB-06A-11D-A196-08	TCGA-D3-A2JB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1d485de5-b864-412e-9632-01486f9c3f71	a3e70dee-f653-4d31-94ca-12ec9def742e	g.chr7:130067831_130067832GG>TT	uc003vpz.2	-	2	108_109	c.61_62CC>AA	c.(61-63)CCA>AAA	p.P21K	TSGA14_uc010lmf.2_5'UTR|TSGA14_uc003vqa.2_Missense_Mutation_p.P21K|TSGA14_uc011kpg.1_Missense_Mutation_p.P21K|TSGA14_uc003vqb.1_RNA	NM_018718	NP_061188	Q9BYV8	CEP41_HUMAN	testis specific, 14	21					G2/M transition of mitotic cell cycle	centrosome|cytosol					0	Melanoma(18;0.0435)					CTGGTATCTTGGGTTCTGTGGT	0.312000													10	259					0	0	6.4e-05	0	0
MEST	4232	broad.mit.edu	37	7	130137004	130137005	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A2JB-06A-11D-A196-08	TCGA-D3-A2JB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1d485de5-b864-412e-9632-01486f9c3f71	a3e70dee-f653-4d31-94ca-12ec9def742e	g.chr7:130137004_130137005GG>TT	uc003vqg.2	+	3	406_407	c.189_190GG>TT	c.(187-192)GTGGGT>GTTTGT	p.G64C	MEST_uc003vqc.2_Missense_Mutation_p.G55C|MEST_uc003vqd.2_Missense_Mutation_p.G55C|MEST_uc003vqf.2_Missense_Mutation_p.G55C|MEST_uc011kph.1_Missense_Mutation_p.G50C|MEST_uc010lmg.2_Missense_Mutation_p.G64C	NM_002402	NP_002393	Q5EB52	MEST_HUMAN	mesoderm specific transcript isoform a	64	Helical; (Potential).				mesoderm development	endoplasmic reticulum membrane|integral to membrane	hydrolase activity|protein binding			ovary(2)	2	Melanoma(18;0.0435)					TAGACTCTGTGGGTGTGGTTGG	0.386000													11	565					0	0	6.4e-05	0	0
RP1L1	94137	broad.mit.edu	37	8	10467344	10467345	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A2JB-06A-11D-A196-08	TCGA-D3-A2JB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1d485de5-b864-412e-9632-01486f9c3f71	a3e70dee-f653-4d31-94ca-12ec9def742e	g.chr8:10467344_10467345GG>TT	uc003wtc.2	-	4	4492_4493	c.4263_4264CC>AA	c.(4261-4266)TCCCAG>TCAAAG	p.Q1422K		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	1422					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		TCATCTTCCTGGGAGCCTTTCC	0.604000													12	572					0	0	6.4e-05	0	0
Unknown	0	broad.mit.edu	37	9	90746875	90746875	+	Silent	SNP	G	A	A			TCGA-D3-A2JB-06A-11D-A196-08	TCGA-D3-A2JB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1d485de5-b864-412e-9632-01486f9c3f71	a3e70dee-f653-4d31-94ca-12ec9def742e	g.chr9:90746875G>A	uc011lti.1	-	4	1106	c.1077C>T	c.(1075-1077)TCC>TCT	p.S359S						SubName: Full=cDNA FLJ59639;																		CTGGGAAAGAGGATTGAAGAT	0.537000													7	340					0	0	3.86212e-05	0	0
MED12	9968	broad.mit.edu	37	X	70342382	70342382	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JB-06A-11D-A196-08	TCGA-D3-A2JB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1d485de5-b864-412e-9632-01486f9c3f71	a3e70dee-f653-4d31-94ca-12ec9def742e	g.chrX:70342382G>A	uc004dyy.2	+	9	1472	c.1273G>A	c.(1273-1275)GAG>AAG	p.E425K	MED12_uc011mpq.1_Missense_Mutation_p.E425K|MED12_uc004dyz.2_Missense_Mutation_p.E425K|MED12_uc004dza.2_Missense_Mutation_p.E272K	NM_005120	NP_005111	Q93074	MED12_HUMAN	mediator complex subunit 12	425					androgen receptor signaling pathway|negative regulation of Wnt receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ligand-dependent nuclear receptor transcription coactivator activity|protein C-terminus binding|protein domain specific binding|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	4	Renal(35;0.156)					GCGGGAGATCGAGCAGCAGAT	0.488000													7	66					0	0	0.000157383	0	0
HNRNPH2	3188	broad.mit.edu	37	X	100667886	100667886	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A2JB-06A-11D-A196-08	TCGA-D3-A2JB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1d485de5-b864-412e-9632-01486f9c3f71	a3e70dee-f653-4d31-94ca-12ec9def742e	g.chrX:100667886G>T	uc004ehm.2	+	2	1080	c.910G>T	c.(910-912)GAT>TAT	p.D304Y	HNRNPH2_uc004ehn.2_Missense_Mutation_p.D304Y	NM_019597	NP_062543	P55795	HNRH2_HUMAN	heterogeneous nuclear ribonucleoprotein H2	304	RRM 3.|2 X 16 AA Gly-rich approximate repeats.				nuclear mRNA splicing, via spliceosome	actin cytoskeleton|cytoplasm|heterogeneous nuclear ribonucleoprotein complex|nucleoplasm	nucleotide binding|protein binding|RNA binding				0						CACTGAGAATGATATTTATAA	0.448000													20	98					3.51602e-12	3.68587e-10	0.000132079	1	0
AGTR2	186	broad.mit.edu	37	X	115303663	115303663	+	Missense_Mutation	SNP	T	G	G			TCGA-D3-A2JB-06A-11D-A196-08	TCGA-D3-A2JB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1d485de5-b864-412e-9632-01486f9c3f71	a3e70dee-f653-4d31-94ca-12ec9def742e	g.chrX:115303663T>G	uc004eqh.3	+	3	337	c.130T>G	c.(130-132)TTA>GTA	p.L44V		NM_000686	NP_000677	P50052	AGTR2_HUMAN	angiotensin II receptor, type 2	44	Extracellular (Potential).				behavior|blood vessel remodeling|brain development|G-protein signaling, coupled to cGMP nucleotide second messenger|intracellular protein kinase cascade|negative regulation of blood vessel endothelial cell migration|negative regulation of cell growth|negative regulation of heart rate|negative regulation of nerve growth factor receptor signaling pathway|nitric oxide mediated signal transduction|positive regulation of apoptosis|positive regulation of nitric-oxide synthase activity|positive regulation of phosphoprotein phosphatase activity|positive regulation of vasodilation|regulation of systemic arterial blood pressure by circulatory renin-angiotensin		angiotensin type II receptor activity|receptor antagonist activity			ovary(2)|lung(1)	3						AGATAAGCATTTAGATGCAAT	0.368000													3	14					0	0	0.00024832	0	0
L1CAM	3897	broad.mit.edu	37	X	153130422	153130422	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JB-06A-11D-A196-08	TCGA-D3-A2JB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1d485de5-b864-412e-9632-01486f9c3f71	a3e70dee-f653-4d31-94ca-12ec9def742e	g.chrX:153130422G>A	uc004fjb.2	-	22	3008	c.2900C>T	c.(2899-2901)TCC>TTC	p.S967F	L1CAM_uc004fjc.2_Missense_Mutation_p.S967F|L1CAM_uc010nuo.2_Missense_Mutation_p.S962F	NM_000425	NP_000416	P32004	L1CAM_HUMAN	L1 cell adhesion molecule isoform 1 precursor	967	Extracellular (Potential).|Fibronectin type-III 4.				axon guidance|blood coagulation|cell death|leukocyte migration	integral to membrane				ovary(8)|central_nervous_system(1)	9	all_cancers(53;6.72e-15)|all_epithelial(53;3.19e-09)|all_lung(58;3.39e-06)|all_hematologic(71;4.25e-06)|Lung NSC(58;4.7e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					AAGGTTGAAGGACAGTTGCCC	0.657000													36	239					0	0	0.000191422	0	0
TSC22D1	8848	broad.mit.edu	37	13	45148691	45148693	+	In_Frame_Del	DEL	TGT	-	-	rs148625973		TCGA-D3-A2JB-06A-11D-A196-08	TCGA-D3-A2JB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1d485de5-b864-412e-9632-01486f9c3f71	a3e70dee-f653-4d31-94ca-12ec9def742e	g.chr13:45148691_45148693delTGT	uc001uzn.3	-	1	2009_2011	c.1518_1520delACA	c.(1516-1521)CAACAG>CAG	p.506_507QQ>Q	TSC22D1_uc001uzo.1_In_Frame_Del_p.506_507QQ>Q	NM_183422	NP_904358	Q15714	T22D1_HUMAN	TSC22 domain family, member 1 isoform 1	506_507	Gln-rich.				transcription from RNA polymerase II promoter	cytoplasm|nucleus	protein binding|sequence-specific DNA binding transcription factor activity				0		all_hematologic(4;8.74e-08)|Acute lymphoblastic leukemia(4;1.78e-07)|Lung NSC(96;2.21e-05)|Breast(139;0.000625)|Prostate(109;0.000947)|Hepatocellular(98;0.0202)|Lung SC(185;0.0262)		GBM - Glioblastoma multiforme(144;0.000522)|BRCA - Breast invasive adenocarcinoma(63;0.118)		TGgttgttgctgttgttgttgtt	0.404													8	168	---	---	---	---					
MESP2	145873	broad.mit.edu	37	15	90320121	90320144	+	In_Frame_Del	DEL	AGGGGCAGGGGCAAGGGCAGGGGC	-	-	rs66601910		TCGA-D3-A2JB-06A-11D-A196-08	TCGA-D3-A2JB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1d485de5-b864-412e-9632-01486f9c3f71	a3e70dee-f653-4d31-94ca-12ec9def742e	g.chr15:90320121_90320144delAGGGGCAGGGGCAAGGGCAGGGGC	uc002bon.2	+	1	533_556	c.533_556delAGGGGCAGGGGCAAGGGCAGGGGC	c.(532-558)GAGGGGCAGGGGCAAGGGCAGGGGCAG>GAG	p.GQGQGQGQ195del	MESP2_uc010uqa.1_Intron	NM_001039958	NP_001035047	Q0VG99	MESP2_HUMAN	mesoderm posterior 2 homolog	195_202	13 X 2 AA tandem repeats of G-Q.|12.			Missing (in Ref. 2; AAI11414).	Notch signaling pathway	nucleus	DNA binding				0	Lung NSC(78;0.0221)|all_lung(78;0.0448)		BRCA - Breast invasive adenocarcinoma(143;0.0146)|KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)			ACGCaggcggaggggcaggggcaagggcaggggcaggggcaggg	0.473													5	8	---	---	---	---					
CHERP	10523	broad.mit.edu	37	19	16640581	16640583	+	In_Frame_Del	DEL	TGC	-	-			TCGA-D3-A2JB-06A-11D-A196-08	TCGA-D3-A2JB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1d485de5-b864-412e-9632-01486f9c3f71	a3e70dee-f653-4d31-94ca-12ec9def742e	g.chr19:16640581_16640583delTGC	uc002nei.1	-	8	1079_1081	c.1005_1007delGCA	c.(1003-1008)CAGCAA>CAA	p.335_336QQ>Q	MED26_uc002nee.2_Intron	NM_006387	NP_006378	Q8IWX8	CHERP_HUMAN	calcium homeostasis endoplasmic reticulum	335_336	Gln-rich.				cellular calcium ion homeostasis|negative regulation of cell proliferation|nervous system development|RNA processing	endoplasmic reticulum|perinuclear region of cytoplasm	RNA binding			ovary(2)	2						ctgctgctgttgctgctgctgct	0.552													7	93	---	---	---	---					
TTN	7273	broad.mit.edu	37	2	179614932	179614932	+	Frame_Shift_Del	DEL	T	-	-			TCGA-D3-A2JB-06A-11D-A196-08	TCGA-D3-A2JB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1d485de5-b864-412e-9632-01486f9c3f71	a3e70dee-f653-4d31-94ca-12ec9def742e	g.chr2:179614932delT	uc002unb.2	-	46	12419	c.12195delA	c.(12193-12195)CAAfs	p.Q4065fs	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CGCCTTTTGCTTGGTCAAACA	0.423													2	4	---	---	---	---					
FAM164A	51101	broad.mit.edu	37	8	79598774	79598775	+	Frame_Shift_Del	DEL	AA	-	-			TCGA-D3-A2JB-06A-11D-A196-08	TCGA-D3-A2JB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1d485de5-b864-412e-9632-01486f9c3f71	a3e70dee-f653-4d31-94ca-12ec9def742e	g.chr8:79598774_79598775delAA	uc003ybd.2	+	4	385_386	c.283_284delAA	c.(283-285)AAAfs	p.K95fs		NM_016010	NP_057094	Q96GY0	F164A_HUMAN	hypothetical protein LOC51101	95										ovary(1)	1						AAGAGCAGCTAAAGGCCTTGAT	0.376													2	4	---	---	---	---					
