Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
AGRN	375790	broad.mit.edu	37	1	983033	983033	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:983033C>T	uc001ack.1	+	21	3647	c.3597C>T	c.(3595-3597)TCC>TCT	p.S1199S		NM_198576	NP_940978	O00468	AGRIN_HUMAN	agrin precursor	1199	SEA.				axon guidance|clustering of voltage-gated sodium channels|muscarinic acetylcholine receptor signaling pathway|receptor clustering	basal lamina	laminin binding|structural constituent of cytoskeleton			central_nervous_system(2)|breast(1)	3	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		UCEC - Uterine corpus endometrioid carcinoma (11;0.00462)|Epithelial(90;5.98e-38)|OV - Ovarian serous cystadenocarcinoma(86;5.43e-23)|Colorectal(212;5.97e-05)|COAD - Colon adenocarcinoma(227;0.000201)|Kidney(185;0.0024)|BRCA - Breast invasive adenocarcinoma(365;0.00246)|STAD - Stomach adenocarcinoma(132;0.00645)|KIRC - Kidney renal clear cell carcinoma(229;0.0354)|Lung(427;0.201)		CCGGCAAATCCGTCCGCGCCA	0.617													35	26					0	0	1	0	0
PRDM16	63976	broad.mit.edu	37	1	3328855	3328855	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:3328855C>T	uc001akf.2	+	9	2174	c.2094C>T	c.(2092-2094)TCC>TCT	p.S698S	PRDM16_uc001akc.2_Silent_p.S698S|PRDM16_uc001akd.2_Silent_p.S698S|PRDM16_uc001ake.2_Silent_p.S698S|PRDM16_uc009vlh.2_Silent_p.S399S	NM_022114	NP_071397	Q9HAZ2	PRD16_HUMAN	PR domain containing 16 isoform 1	698	Interaction with CTBP1 and CTBP2 (By similarity).				brown fat cell differentiation|negative regulation of granulocyte differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of cellular respiration|transcription, DNA-dependent	transcriptional repressor complex	protein binding|sequence-specific DNA binding|transcription coactivator activity|zinc ion binding			lung(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7	all_cancers(77;0.00208)|all_epithelial(69;0.000732)|Ovarian(185;0.0634)|Lung NSC(156;0.109)|all_lung(157;0.111)	all_epithelial(116;2.03e-21)|all_lung(118;7.55e-09)|Lung NSC(185;1.28e-06)|Breast(487;0.000792)|Renal(390;0.00137)|Hepatocellular(190;0.00515)|Myeloproliferative disorder(586;0.0267)|Ovarian(437;0.0365)|Lung SC(97;0.114)|Medulloblastoma(700;0.134)		Epithelial(90;5.59e-35)|OV - Ovarian serous cystadenocarcinoma(86;1.99e-20)|GBM - Glioblastoma multiforme(42;3.72e-11)|Colorectal(212;0.000425)|BRCA - Breast invasive adenocarcinoma(365;0.000946)|COAD - Colon adenocarcinoma(227;0.000968)|Kidney(185;0.00155)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0175)|Lung(427;0.137)		CCATCGCATCCATTGCCGAGA	0.622			T	EVI1	MDS|AML								30	47					0	0	1	0	0
AJAP1	55966	broad.mit.edu	37	1	4772263	4772263	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:4772263C>T	uc001alm.1	+	2	714	c.333C>T	c.(331-333)CTC>CTT	p.L111L	AJAP1_uc001aln.2_Silent_p.L111L	NM_001042478	NP_001035943	Q9UKB5	AJAP1_HUMAN	adherens junction associated protein 1	111	Extracellular (Potential).				cell adhesion	adherens junction|apical plasma membrane|basolateral plasma membrane|integral to membrane				lung(1)	1	all_cancers(77;0.071)|Ovarian(185;0.0721)	all_cancers(23;1.77e-36)|all_epithelial(116;1.26e-21)|all_lung(118;3.51e-08)|Lung NSC(185;3.47e-06)|all_neural(13;8.84e-06)|all_hematologic(16;7.61e-05)|Breast(487;0.000507)|Renal(390;0.0007)|Colorectal(325;0.00117)|Hepatocellular(190;0.0071)|Glioma(11;0.0155)|Myeloproliferative disorder(586;0.0258)|Ovarian(437;0.0409)|Lung SC(97;0.133)|Medulloblastoma(700;0.215)		Epithelial(90;3.89e-35)|OV - Ovarian serous cystadenocarcinoma(86;1.97e-19)|GBM - Glioblastoma multiforme(42;3.71e-19)|Colorectal(212;4.57e-06)|COAD - Colon adenocarcinoma(227;0.00019)|Kidney(185;0.000969)|BRCA - Breast invasive adenocarcinoma(365;0.00122)|STAD - Stomach adenocarcinoma(132;0.00578)|KIRC - Kidney renal clear cell carcinoma(229;0.0126)|READ - Rectum adenocarcinoma(331;0.0689)		CGGCCGCCCTCGTGCCCAAGG	0.731													9	7					0	0	1	0	0
NPHP4	261734	broad.mit.edu	37	1	5924434	5924434	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:5924434G>A	uc001alq.1	-	28	4226	c.3960C>T	c.(3958-3960)CTC>CTT	p.L1320L	NPHP4_uc001alr.1_3'UTR	NM_015102	NP_055917	O75161	NPHP4_HUMAN	nephroretinin	1320					actin cytoskeleton organization|cell-cell adhesion|signal transduction|visual behavior	cell-cell junction|centrosome|cilium|microtubule basal body	protein binding|structural molecule activity			pancreas(1)	1	Ovarian(185;0.0634)	all_cancers(23;7.53e-41)|all_epithelial(116;3.96e-23)|all_lung(118;5.12e-09)|all_hematologic(16;5.45e-07)|Lung NSC(185;5.49e-07)|all_neural(13;3.21e-06)|Acute lymphoblastic leukemia(12;3.44e-05)|Breast(487;0.000601)|Renal(390;0.0007)|Colorectal(325;0.00113)|Hepatocellular(190;0.00213)|Glioma(11;0.00223)|Myeloproliferative disorder(586;0.0256)|Ovarian(437;0.04)|Lung SC(97;0.128)|Medulloblastoma(700;0.213)		Epithelial(90;1.69e-36)|GBM - Glioblastoma multiforme(13;5.07e-29)|OV - Ovarian serous cystadenocarcinoma(86;1.05e-19)|Colorectal(212;4.54e-07)|COAD - Colon adenocarcinoma(227;3.14e-05)|Kidney(185;0.00012)|BRCA - Breast invasive adenocarcinoma(365;0.00102)|KIRC - Kidney renal clear cell carcinoma(229;0.00179)|STAD - Stomach adenocarcinoma(132;0.00472)|READ - Rectum adenocarcinoma(331;0.0649)		AGAGGCACACGAGCCAGGAGG	0.642													3	15					0	0	1	0	0
CHD5	26038	broad.mit.edu	37	1	6219548	6219548	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:6219548C>T	uc001amb.1	-	3	335	c.235G>A	c.(235-237)GAA>AAA	p.E79K		NM_015557	NP_056372	Q8TDI0	CHD5_HUMAN	chromodomain helicase DNA binding protein 5	79	Lys-rich.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|DNA binding|zinc ion binding			central_nervous_system(3)|breast(3)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)|skin(1)|pancreas(1)	12	Ovarian(185;0.0634)	all_cancers(23;5.36e-32)|all_epithelial(116;2.32e-17)|all_neural(13;3.68e-06)|all_lung(118;3.94e-06)|all_hematologic(16;2.39e-05)|Lung NSC(185;5.33e-05)|Acute lymphoblastic leukemia(12;0.000372)|Glioma(11;0.00127)|Renal(390;0.00188)|Colorectal(325;0.00342)|Breast(487;0.00373)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.15)		Epithelial(90;3.08e-37)|GBM - Glioblastoma multiforme(13;1.36e-31)|OV - Ovarian serous cystadenocarcinoma(86;7.7e-19)|Colorectal(212;9.97e-08)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(185;6.16e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.00109)|BRCA - Breast invasive adenocarcinoma(365;0.0012)|STAD - Stomach adenocarcinoma(132;0.00346)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.193)		AGATCCTCTTCATTCTCTGAT	0.423													5	2					0	0	1	0	0
KIF1B	23095	broad.mit.edu	37	1	10403297	10403297	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:10403297C>T	uc001aqx.3	+	34	3842	c.3640C>T	c.(3640-3642)CAG>TAG	p.Q1214*	KIF1B_uc001aqw.3_Nonsense_Mutation_p.Q1168*|KIF1B_uc001aqy.2_Nonsense_Mutation_p.Q1188*|KIF1B_uc001aqz.2_Nonsense_Mutation_p.Q1214*|KIF1B_uc001ara.2_Nonsense_Mutation_p.Q1174*|KIF1B_uc001arb.2_Nonsense_Mutation_p.Q1200*	NM_015074	NP_055889	O60333	KIF1B_HUMAN	kinesin family member 1B isoform b	1214					anterograde axon cargo transport|apoptosis|neuromuscular synaptic transmission|neuron-neuron synaptic transmission	cytoplasmic vesicle membrane|microtubule|microtubule associated complex|mitochondrion	ATP binding|ATPase activity|kinesin binding|microtubule motor activity|protein binding			ovary(2)|upper_aerodigestive_tract(1)	3	Ovarian(185;0.203)	all_lung(284;1.31e-05)|Lung NSC(185;2.2e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0259)|Colorectal(212;9.79e-07)|COAD - Colon adenocarcinoma(227;0.000143)|BRCA - Breast invasive adenocarcinoma(304;0.000413)|Kidney(185;0.00134)|KIRC - Kidney renal clear cell carcinoma(229;0.0037)|STAD - Stomach adenocarcinoma(132;0.0113)|READ - Rectum adenocarcinoma(331;0.0642)		CAGTCCGCCTCAGCCGTGCCG	0.453													6	19					0	0	1	0	0
CASZ1	54897	broad.mit.edu	37	1	10713766	10713766	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:10713766G>A	uc001aro.2	-	11	2668	c.2348C>T	c.(2347-2349)TCA>TTA	p.S783L	CASZ1_uc001arp.1_Missense_Mutation_p.S783L|CASZ1_uc009vmx.2_Missense_Mutation_p.S807L	NM_001079843	NP_001073312	Q86V15	CASZ1_HUMAN	castor homolog 1, zinc finger isoform a	783					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			skin(1)	1	Ovarian(185;0.203)|all_lung(157;0.204)	Lung NSC(185;4.96e-06)|all_lung(284;1.22e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00212)|Hepatocellular(190;0.00913)|Ovarian(437;0.0229)|Myeloproliferative disorder(586;0.0255)	STAD - Stomach adenocarcinoma(5;0.0224)	UCEC - Uterine corpus endometrioid carcinoma (279;0.0265)|Colorectal(212;3.54e-08)|COAD - Colon adenocarcinoma(227;9.56e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000219)|Kidney(185;0.00142)|KIRC - Kidney renal clear cell carcinoma(229;0.00381)|READ - Rectum adenocarcinoma(331;0.0419)|STAD - Stomach adenocarcinoma(132;0.0623)		CAGGGGGATTGAGCCAGGCAG	0.711													32	32					0	0	1	0	0
SRM	6723	broad.mit.edu	37	1	11118916	11118916	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:11118916G>A	uc001arz.1	-	3	413	c.322C>T	c.(322-324)CTG>TTG	p.L108L	SRM_uc001ary.1_5'Flank	NM_003132	NP_003123	P19623	SPEE_HUMAN	spermidine synthase	108					spermidine biosynthetic process	cytosol	protein homodimerization activity|spermidine synthase activity				0	Ovarian(185;0.249)	Lung NSC(185;1.74e-05)|all_lung(284;2.05e-05)|Renal(390;0.000147)|Colorectal(325;0.00205)|Breast(348;0.00262)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)	STAD - Stomach adenocarcinoma(5;0.228)	UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.14e-07)|COAD - Colon adenocarcinoma(227;7.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000294)|Kidney(185;0.000728)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|READ - Rectum adenocarcinoma(331;0.0487)|STAD - Stomach adenocarcinoma(313;0.192)	S-Adenosylmethionine(DB00118)|Spermine(DB00127)	ACCTCCCGCAGGACACCTCCA	0.667													9	9					0	0	1	0	0
MTOR	2475	broad.mit.edu	37	1	11300507	11300507	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:11300507G>A	uc001asd.2	-	11	1760	c.1639C>T	c.(1639-1641)CTT>TTT	p.L547F		NM_004958	NP_004949	P42345	MTOR_HUMAN	FK506 binding protein 12-rapamycin associated	547					cell growth|cellular response to hypoxia|insulin receptor signaling pathway|nerve growth factor receptor signaling pathway|peptidyl-serine phosphorylation|phosphatidylinositol-mediated signaling|protein autophosphorylation|protein catabolic process|response to amino acid stimulus|response to nutrient|T cell costimulation|TOR signaling cascade	endoplasmic reticulum membrane|Golgi membrane|lysosome|mitochondrial outer membrane|phosphatidylinositol 3-kinase complex|PML body|TORC1 complex|TORC2 complex	ATP binding|phosphoprotein binding|protein serine/threonine kinase activity			central_nervous_system(7)|lung(6)|ovary(6)|skin(3)|kidney(3)|large_intestine(2)|breast(2)	29						TTGTGCATAAGGACCAGGGAC	0.602													49	47					0	0	1	0	0
LOC649330	649330	broad.mit.edu	37	1	12907847	12907847	+	Missense_Mutation	SNP	C	T	T	rs150230498		TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:12907847C>T	uc009vno.2	-	1	391	c.296G>A	c.(295-297)CGA>CAA	p.R99Q	HNRNPCL1_uc010obf.1_Missense_Mutation_p.R99Q	NM_001146181	NP_001139653	B7ZW38	B7ZW38_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	99							nucleic acid binding|nucleotide binding				0						CGCTGCTGATCGTTTCACACC	0.488													18	75					0	0	1	0	0
LOC649330	649330	broad.mit.edu	37	1	12907865	12907865	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:12907865C>T	uc009vno.2	-	1	373	c.278G>A	c.(277-279)GGA>GAA	p.G93E	HNRNPCL1_uc010obf.1_Missense_Mutation_p.G93E	NM_001146181	NP_001139653	B7ZW38	B7ZW38_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	93							nucleic acid binding|nucleotide binding				0						ACCTGCGTTTCCTCGGTTCAC	0.483													22	89					0	0	1	0	0
EFHD2	79180	broad.mit.edu	37	1	15752469	15752469	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:15752469C>T	uc001awh.2	+	2	488	c.411C>T	c.(409-411)ATC>ATT	p.I137I		NM_024329	NP_077305	Q96C19	EFHD2_HUMAN	EF-hand domain family, member D2	137	EF-hand 2.					membrane raft					0		Renal(390;0.00145)|Breast(348;0.00173)|Colorectal(325;0.00215)|all_lung(284;0.00366)|Lung NSC(340;0.00395)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0798)|Hepatocellular(190;0.152)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.59e-07)|COAD - Colon adenocarcinoma(227;3.79e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000119)|KIRC - Kidney renal clear cell carcinoma(229;0.00251)|STAD - Stomach adenocarcinoma(313;0.00727)|READ - Rectum adenocarcinoma(331;0.0649)		AAAACATGATCAAGGAGGTGG	0.597													29	39					0	0	1	0	0
ESPNP	284729	broad.mit.edu	37	1	17023403	17023403	+	Silent	SNP	G	A	A	rs10907267	by1000genomes	TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:17023403G>A	uc001azn.1	-	9	1545	c.1431C>T	c.(1429-1431)AAC>AAT	p.N477N		NR_026567				RecName: Full=Espin; AltName: Full=Ectoplasmic specialization protein; AltName: Full=Autosomal recessive deafness type 36 protein;												0						GGAACATCACGTTGAAAGACT	0.622													5	36					0	0	1	0	0
RCC2	55920	broad.mit.edu	37	1	17755626	17755626	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:17755626G>A	uc001bal.2	-	2	402	c.355C>T	c.(355-357)CGA>TGA	p.R119*	RCC2_uc001bam.2_Nonsense_Mutation_p.R119*	NM_001136204	NP_001129676	Q9P258	RCC2_HUMAN	regulator of chromosome condensation 2	119	RCC1 1.				cell division|mitotic prometaphase	chromosome, centromeric region|cytosol|microtubule|nucleolus|spindle					0		Colorectal(325;0.000147)|Breast(348;0.00122)|Renal(390;0.00145)|all_lung(284;0.0054)|Lung NSC(340;0.00566)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00492)|BRCA - Breast invasive adenocarcinoma(304;7.69e-06)|COAD - Colon adenocarcinoma(227;1.19e-05)|Kidney(64;0.000189)|KIRC - Kidney renal clear cell carcinoma(64;0.00273)|STAD - Stomach adenocarcinoma(196;0.0135)|READ - Rectum adenocarcinoma(331;0.0656)|Lung(427;0.19)		ACTTCTTTTCGACCAATCAAG	0.398													30	54					0	0	1	0	0
UBXN10	127733	broad.mit.edu	37	1	20517570	20517570	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:20517570G>A	uc001bdb.2	+	2	600	c.516G>A	c.(514-516)AGG>AGA	p.R172R		NM_152376	NP_689589	Q96LJ8	UBX10_HUMAN	UBX domain protein 10	172										ovary(1)	1						CCGTGGAGAGGAAATTCATCG	0.522													30	29					0	0	1	0	0
EIF4G3	8672	broad.mit.edu	37	1	21151665	21151665	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:21151665C>T	uc001bec.2	-	28	4384	c.4128G>A	c.(4126-4128)TGG>TGA	p.W1376*	EIF4G3_uc010odi.1_Nonsense_Mutation_p.W980*|EIF4G3_uc010odj.1_Nonsense_Mutation_p.W1375*|EIF4G3_uc009vpz.2_Nonsense_Mutation_p.W1096*|EIF4G3_uc001bed.2_Nonsense_Mutation_p.W1376*|EIF4G3_uc001bef.2_Nonsense_Mutation_p.W1412*|EIF4G3_uc001bee.2_Nonsense_Mutation_p.W1382*	NM_003760	NP_003751	O43432	IF4G3_HUMAN	eukaryotic translation initiation factor 4	1376					interspecies interaction between organisms|regulation of translational initiation|RNA metabolic process	eukaryotic translation initiation factor 4F complex	protein binding|RNA cap binding|translation initiation factor activity			skin(1)	1		all_lung(284;2.61e-06)|Lung NSC(340;2.81e-06)|Colorectal(325;3.46e-05)|Renal(390;9.67e-05)|Breast(348;0.00149)|Ovarian(437;0.00338)|Myeloproliferative disorder(586;0.0256)		UCEC - Uterine corpus endometrioid carcinoma (279;0.023)|COAD - Colon adenocarcinoma(152;5.42e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000327)|GBM - Glioblastoma multiforme(114;0.000696)|Kidney(64;0.0018)|STAD - Stomach adenocarcinoma(196;0.00644)|KIRC - Kidney renal clear cell carcinoma(64;0.0185)|READ - Rectum adenocarcinoma(331;0.124)|Lung(427;0.191)		CAGCCTCCCTCCATAAGGCTC	0.343													10	25					0	0	1	0	0
ALPL	249	broad.mit.edu	37	1	21890667	21890667	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:21890667G>A	uc001bet.2	+	6	863	c.606G>A	c.(604-606)AAG>AAA	p.K202K	ALPL_uc010odn.1_Silent_p.K150K|ALPL_uc010odo.1_Silent_p.K147K|ALPL_uc010odp.1_Silent_p.K125K|ALPL_uc001beu.3_Silent_p.K202K	NM_000478	NP_000469	P05186	PPBT_HUMAN	tissue-nonspecific alkaline phosphatase	202					response to vitamin D|skeletal system development	anchored to membrane|cytoplasm|integral to membrane|plasma membrane	alkaline phosphatase activity|metal ion binding			ovary(2)|central_nervous_system(2)|skin(1)	5		all_lung(284;2.19e-05)|Lung NSC(340;2.22e-05)|Colorectal(325;3.46e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0192)|OV - Ovarian serous cystadenocarcinoma(117;8.7e-28)|COAD - Colon adenocarcinoma(152;1.57e-05)|GBM - Glioblastoma multiforme(114;2.66e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000177)|STAD - Stomach adenocarcinoma(196;0.00645)|KIRC - Kidney renal clear cell carcinoma(1967;0.00856)|READ - Rectum adenocarcinoma(331;0.0623)|Lung(427;0.146)	Amifostine(DB01143)	AGGGCTGTAAGGACATCGCCT	0.657													23	35					0	0	1	0	0
ZBTB40	9923	broad.mit.edu	37	1	22834596	22834596	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:22834596C>T	uc001bft.2	+	8	1974	c.1463C>T	c.(1462-1464)TCA>TTA	p.S488L	ZBTB40_uc001bfu.2_Missense_Mutation_p.S488L|ZBTB40_uc009vqi.1_Missense_Mutation_p.S376L|ZBTB40_uc001bfv.1_Missense_Mutation_p.S117L	NM_001083621	NP_001077090	Q9NUA8	ZBT40_HUMAN	zinc finger and BTB domain containing 40	488					bone mineralization|regulation of transcription, DNA-dependent|response to DNA damage stimulus|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;2.86e-26)|Colorectal(126;8.55e-08)|COAD - Colon adenocarcinoma(152;4.1e-06)|GBM - Glioblastoma multiforme(114;1.39e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000712)|KIRC - Kidney renal clear cell carcinoma(1967;0.00374)|STAD - Stomach adenocarcinoma(196;0.00645)|READ - Rectum adenocarcinoma(331;0.0693)|Lung(427;0.216)		AAGATGATCTCACACATGACA	0.264													12	29					0	0	1	0	0
EPHB2	2048	broad.mit.edu	37	1	23219430	23219430	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:23219430C>T	uc009vqj.1	+	7	1627	c.1482C>T	c.(1480-1482)ACC>ACT	p.T494T	EPHB2_uc001bge.2_Silent_p.T494T|EPHB2_uc001bgf.2_Silent_p.T494T|EPHB2_uc010odu.1_Silent_p.T494T	NM_017449	NP_059145	P29323	EPHB2_HUMAN	ephrin receptor EphB2 isoform 1 precursor	494	Fibronectin type-III 2.|Extracellular (Potential).				axon guidance	integral to plasma membrane	ATP binding|transmembrane-ephrin receptor activity			ovary(3)|lung(1)|pancreas(1)	5		Colorectal(325;3.46e-05)|Lung NSC(340;3.7e-05)|all_lung(284;5.45e-05)|Renal(390;0.000228)|Breast(348;0.0027)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0258)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0348)|OV - Ovarian serous cystadenocarcinoma(117;3.67e-26)|Colorectal(126;3.23e-08)|COAD - Colon adenocarcinoma(152;9.32e-07)|GBM - Glioblastoma multiforme(114;2.93e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000606)|KIRC - Kidney renal clear cell carcinoma(1967;0.00371)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.126)|Lung(427;0.153)		ACACGGTCACCGTGCAGGGCC	0.572									Hereditary_Prostate_Cancer				34	35					0	0	1	0	0
MYOM3	127294	broad.mit.edu	37	1	24388577	24388577	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:24388577C>T	uc001bin.3	-	33	3956	c.3793G>A	c.(3793-3795)GAT>AAT	p.D1265N	MYOM3_uc001bil.3_Missense_Mutation_p.D158N|MYOM3_uc001bim.3_Missense_Mutation_p.D922N	NM_152372	NP_689585	Q5VTT5	MYOM3_HUMAN	myomesin family, member 3	1265										skin(2)|ovary(1)	3		Colorectal(325;3.55e-05)|Renal(390;0.000703)|Lung NSC(340;0.001)|all_lung(284;0.0014)|Ovarian(437;0.00351)|Breast(348;0.0126)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;5.31e-24)|Colorectal(126;7.52e-08)|COAD - Colon adenocarcinoma(152;4.01e-06)|GBM - Glioblastoma multiforme(114;4.36e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00108)|KIRC - Kidney renal clear cell carcinoma(1967;0.00404)|STAD - Stomach adenocarcinoma(196;0.00966)|READ - Rectum adenocarcinoma(331;0.0678)|Lung(427;0.153)		CTTATCCGATCACCACTCTCC	0.527													38	106					0	0	1	0	0
STMN1	3925	broad.mit.edu	37	1	26230203	26230203	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:26230203G>A	uc001bkz.2	-	3	479	c.115C>T	c.(115-117)CCT>TCT	p.P39S	STMN1_uc010oev.1_Missense_Mutation_p.P39S|STMN1_uc001bla.2_Missense_Mutation_p.P39S|STMN1_uc001blb.2_Missense_Mutation_p.P39S|STMN1_uc001blc.2_Missense_Mutation_p.P39S	NM_203401	NP_981946	P16949	STMN1_HUMAN	stathmin 1 isoform a	39					cell differentiation|intracellular signal transduction|microtubule depolymerization|mitotic spindle organization|nervous system development|response to virus	cytoplasm|microtubule	signal transducer activity|tubulin binding				0		Colorectal(325;3.46e-05)|Lung NSC(340;0.000163)|all_lung(284;0.000234)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0155)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0505)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;1.85e-25)|Colorectal(126;2.96e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.000716)|BRCA - Breast invasive adenocarcinoma(304;0.000946)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.013)|READ - Rectum adenocarcinoma(331;0.0649)		TTCTTTGGAGGGGAAAGGGGG	0.468													27	109					0	0	1	0	0
C1orf172	126695	broad.mit.edu	37	1	27277921	27277921	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:27277921C>T	uc001bni.1	-	2	1040	c.951G>A	c.(949-951)GAG>GAA	p.E317E		NM_152365	NP_689578	Q8NAX2	CA172_HUMAN	hypothetical protein LOC126695	317										large_intestine(1)|ovary(1)	2		all_cancers(24;1.29e-21)|all_epithelial(13;2.35e-19)|Colorectal(325;0.000147)|all_lung(284;0.00122)|Lung NSC(340;0.00128)|Breast(348;0.00131)|Renal(390;0.00211)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0707)|all_neural(195;0.0966)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Epithelial(14;3.37e-51)|OV - Ovarian serous cystadenocarcinoma(117;2.22e-29)|Colorectal(126;5.31e-09)|COAD - Colon adenocarcinoma(152;9.31e-07)|BRCA - Breast invasive adenocarcinoma(304;0.000272)|STAD - Stomach adenocarcinoma(196;0.000588)|KIRC - Kidney renal clear cell carcinoma(1967;0.000716)|READ - Rectum adenocarcinoma(331;0.0419)		TTGAACGACCCTCCGAGGTCT	0.637													5	6					0	0	1	0	0
SLC9A1	6548	broad.mit.edu	37	1	27434297	27434297	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:27434297G>A	uc001bnm.2	-	4	1750	c.1124C>T	c.(1123-1125)TCC>TTC	p.S375F	SLC9A1_uc010ofk.1_Missense_Mutation_p.S36F|SLC9A1_uc001bnn.2_Missense_Mutation_p.S375F	NM_003047	NP_003038	P19634	SL9A1_HUMAN	solute carrier family 9, isoform A1	375	Extracellular (Potential).				regulation of pH	integral to membrane	sodium:hydrogen antiporter activity			ovary(1)|central_nervous_system(1)	2				UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Epithelial(14;2.19e-50)|OV - Ovarian serous cystadenocarcinoma(117;1.8e-29)|Colorectal(126;7.61e-09)|COAD - Colon adenocarcinoma(152;9.32e-07)|BRCA - Breast invasive adenocarcinoma(304;0.000521)|KIRC - Kidney renal clear cell carcinoma(1967;0.00079)|STAD - Stomach adenocarcinoma(196;0.00125)|READ - Rectum adenocarcinoma(331;0.046)	Amiloride(DB00594)	GGTGGTGTGGGACTTGTGGGA	0.602													7	17					0	0	1	0	0
GMEB1	10691	broad.mit.edu	37	1	29040750	29040750	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:29040750C>T	uc001bra.2	+	10	1325	c.1187C>T	c.(1186-1188)CCT>CTT	p.P396L	GMEB1_uc001bqz.2_Missense_Mutation_p.P386L|GMEB1_uc001brb.2_Missense_Mutation_p.P386L	NM_006582	NP_006573	Q9Y692	GMEB1_HUMAN	glucocorticoid modulatory element binding	396					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|metal ion binding|transcription coactivator activity				0		Colorectal(325;3.46e-05)|Lung NSC(340;0.000451)|all_lung(284;0.00063)|Breast(348;0.00502)|Renal(390;0.00555)|all_neural(195;0.0227)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0563)|Medulloblastoma(700;0.123)		Colorectal(126;2.96e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|STAD - Stomach adenocarcinoma(196;0.00299)|BRCA - Breast invasive adenocarcinoma(304;0.0221)|KIRC - Kidney renal clear cell carcinoma(1967;0.0296)|READ - Rectum adenocarcinoma(331;0.0649)		CCTTCTCCTCCTGTCCAGCAG	0.567													27	32					0	0	1	0	0
CSMD2	114784	broad.mit.edu	37	1	34190205	34190205	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:34190205G>A	uc001bxn.1	-	18	2705	c.2676C>T	c.(2674-2676)AGC>AGT	p.S892S	CSMD2_uc001bxm.1_Silent_p.S932S	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	892	Sushi 5.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				CCGAGTCACAGCTGAAGGTCA	0.572													12	55					0	0	1	0	0
CSMD2	114784	broad.mit.edu	37	1	34204872	34204872	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:34204872C>T	uc001bxn.1	-	15	2146	c.2117G>A	c.(2116-2118)AGC>AAC	p.S706N	CSMD2_uc001bxm.1_Missense_Mutation_p.S746N	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	706	Sushi 4.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				CAGCTGGAGGCTGTCCCCAAA	0.567													41	46					0	0	1	0	0
CSMD2	114784	broad.mit.edu	37	1	34208985	34208985	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:34208985C>T	uc001bxn.1	-	14	1978	c.1949G>A	c.(1948-1950)GGA>GAA	p.G650E	CSMD2_uc001bxm.1_Missense_Mutation_p.G690E	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	650	Extracellular (Potential).|CUB 4.					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				AAGCTGGTTTCCTGAGAAGGT	0.587													11	45					0	0	1	0	0
CSMD2	114784	broad.mit.edu	37	1	34238193	34238193	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:34238193G>A	uc001bxn.1	-	13	1732	c.1703C>T	c.(1702-1704)TCG>TTG	p.S568L	CSMD2_uc001bxm.1_Missense_Mutation_p.S608L	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	568	Sushi 3.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				CTTCTTAGCCGACCATTGGTT	0.577													20	87					0	0	1	0	0
CSMD2	114784	broad.mit.edu	37	1	34276407	34276407	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:34276407G>A	uc001bxn.1	-	10	1292	c.1263C>T	c.(1261-1263)TTC>TTT	p.F421F	CSMD2_uc001bxm.1_Silent_p.F461F	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	421	CUB 3.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				ACTGAATGGGGAAATTGGGGG	0.547													27	100					0	0	1	0	0
ZMYM6	9204	broad.mit.edu	37	1	35452993	35452993	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:35452993G>A	uc001byh.2	-	16	3918	c.3690C>T	c.(3688-3690)TTC>TTT	p.F1230F	uc001byd.3_5'Flank|uc001bye.2_5'Flank|ZMYM6_uc001byf.1_Intron|ZMYM6_uc010oht.1_Silent_p.F1133F	NM_007167	NP_009098	O95789	ZMYM6_HUMAN	zinc finger protein 258	1230					multicellular organismal development	nucleus	DNA binding|zinc ion binding			ovary(3)	3		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.13)				TTTCTTCTTCGAAGTCGGTGA	0.353													13	49					0	0	1	0	0
GRIK3	2899	broad.mit.edu	37	1	37315973	37315973	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:37315973C>T	uc001caz.2	-	9	1400	c.1265G>A	c.(1264-1266)GGC>GAC	p.G422D	GRIK3_uc001cba.1_Missense_Mutation_p.G422D	NM_000831	NP_000822	Q13003	GRIK3_HUMAN	glutamate receptor, ionotropic, kainate 3	422	Extracellular (Potential).				negative regulation of synaptic transmission, glutamatergic|regulation of membrane potential|synaptic transmission	cell junction|dendrite cytoplasm|integral to plasma membrane|perikaryon|postsynaptic membrane|terminal button	adenylate cyclase inhibiting metabotropic glutamate receptor activity|extracellular-glutamate-gated ion channel activity|G-protein-coupled receptor binding|kainate selective glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)|breast(1)	7		Myeloproliferative disorder(586;0.0258)|all_neural(195;0.169)			L-Glutamic Acid(DB00142)	AGGGCCTCGGCCTTTGGCAAC	0.577													23	75					0	0	1	0	0
EPHA10	284656	broad.mit.edu	37	1	38227189	38227189	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:38227189C>T	uc009vvi.2	-	3	824	c.738G>A	c.(736-738)GGG>GGA	p.G246G	EPHA10_uc001cbw.3_Silent_p.G246G	NM_001099439	NP_001092909	Q5JZY3	EPHAA_HUMAN	EPH receptor A10 isofom 3	246	Extracellular (Potential).					extracellular region|integral to membrane|integral to plasma membrane	ATP binding|ephrin receptor activity|protein binding|transmembrane-ephrin receptor activity			breast(4)|stomach(3)|lung(1)	8	Acute lymphoblastic leukemia(166;0.074)|all_hematologic(146;0.197)	Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				TGCCAGGCTCCCCTTCCGAGT	0.726													7	20					0	0	1	0	0
MACF1	23499	broad.mit.edu	37	1	39934316	39934317	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:39934316_39934317CC>TT	uc010oiu.1	+	61	17261_17262	c.17130_17131CC>TT	c.(17128-17133)GTCCGT>GTTTGT	p.R5711C	MACF1_uc010ois.1_Missense_Mutation_p.R5203C|MACF1_uc001cde.1_Missense_Mutation_p.R80C|MACF1_uc001cdf.1_Missense_Mutation_p.R86C|MACF1_uc001cdg.2_5'UTR|MACF1_uc001cdh.2_5'UTR	NM_033044	NP_149033	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	7161	C-terminal tail (By similarity).|GAR.				cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			TGCGGCTGGTCCGTATTCTGCG	0.436													10	38					0	0	1	0	0
RLF	6018	broad.mit.edu	37	1	40704299	40704299	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:40704299C>T	uc001cfc.3	+	8	3956	c.3925C>T	c.(3925-3927)CCA>TCA	p.P1309S	RLF_uc001cfd.3_Missense_Mutation_p.P1000S	NM_012421	NP_036553	Q13129	RLF_HUMAN	rearranged L-myc fusion	1309					chromosome organization|DNA integration|DNA mediated transformation|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			ovary(2)|pancreas(1)	3	Lung NSC(20;4.38e-06)|Ovarian(52;0.00167)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;5.87e-19)|Epithelial(16;7.02e-16)|all cancers(16;1.69e-14)|Lung(16;0.0427)|LUSC - Lung squamous cell carcinoma(16;0.0461)			ATACCACAAACCATTCCATTG	0.383													8	19					0	0	1	0	0
HIVEP3	59269	broad.mit.edu	37	1	42048413	42048413	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:42048413C>T	uc001cgz.3	-	4	3269	c.2056G>A	c.(2056-2058)GAA>AAA	p.E686K	HIVEP3_uc001cha.3_Missense_Mutation_p.E686K|HIVEP3_uc001cgy.2_RNA	NM_024503	NP_078779	Q5T1R4	ZEP3_HUMAN	human immunodeficiency virus type I enhancer	686	No DNA binding activity or transactivation activity, but complete prevention of TRAF-dependent NF-Kappa-B activation; associates with TRAF2 and JUN (By similarity).				positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6	Ovarian(52;0.00769)|all_hematologic(146;0.109)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0367)				TGACTCTTTTCAGCTTCTGGA	0.483													17	80					0	0	1	0	0
ZNF691	51058	broad.mit.edu	37	1	43317281	43317281	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:43317281C>T	uc001cih.2	+	2	784	c.733C>T	c.(733-735)CAC>TAC	p.H245Y	ZNF691_uc001cig.2_Missense_Mutation_p.H218Y|ZNF691_uc009vwm.2_Missense_Mutation_p.H238Y	NM_015911	NP_056995	Q5VV52	ZN691_HUMAN	zinc finger protein 691	249	C2H2-type 5.					nucleus	DNA binding|zinc ion binding			ovary(2)	2	Ovarian(52;0.00769)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				TCACCGCACCCACACAGGTGA	0.587													15	31					0	0	1	0	0
C1orf210	149466	broad.mit.edu	37	1	43748622	43748622	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:43748622C>T	uc001cit.3	-	3	410	c.176G>A	c.(175-177)CGA>CAA	p.R59Q		NM_182517	NP_872323	Q8IVY1	CA210_HUMAN	hypothetical protein LOC149466	59	Cytoplasmic (Potential).					integral to membrane					0	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				GGCATGGTATCGGCGGCAGAG	0.622													12	53					0	0	1	0	0
MPL	4352	broad.mit.edu	37	1	43805789	43805789	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:43805789G>A	uc001ciw.2	+	5	890	c.845G>A	c.(844-846)GGA>GAA	p.G282E	MPL_uc001civ.2_Missense_Mutation_p.G282E|MPL_uc009vwr.2_Missense_Mutation_p.G275E	NM_005373	NP_005364	P40238	TPOR_HUMAN	myeloproliferative leukemia virus oncogene	282	Extracellular (Potential).				cell proliferation|platelet activation	integral to plasma membrane	cytokine receptor activity			haematopoietic_and_lymphoid_tissue(361)|upper_aerodigestive_tract(1)|pancreas(1)	363	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				GACCTGCCTGGAGATGCAGGT	0.567			Mis		MPD	MPD	congenital amegakaryocytic thrombocytopenia						10	12					0	0	1	0	0
PTPRF	5792	broad.mit.edu	37	1	44071198	44071198	+	Splice_Site	SNP	A	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:44071198A>T	uc001cjr.2	+	19	3730	c.3390_splice	c.e19-2	p.R1130_splice	PTPRF_uc001cjs.2_Splice_Site_p.R1121_splice|PTPRF_uc001cju.2_Splice_Site_p.R508_splice|PTPRF_uc009vwt.2_Splice_Site_p.R690_splice|PTPRF_uc001cjv.2_Splice_Site_p.R590_splice|PTPRF_uc001cjw.2_Splice_Site_p.R356_splice	NM_002840	NP_002831	P10586	PTPRF_HUMAN	protein tyrosine phosphatase, receptor type, F						transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|skin(3)|lung(1)|kidney(1)|central_nervous_system(1)	10	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				CTGCCCACCCAGGTGGTTCTA	0.632													11	36					0	0	1	0	0
DPH2	1802	broad.mit.edu	37	1	44437122	44437122	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:44437122C>T	uc001ckz.2	+	4	743	c.548C>T	c.(547-549)CCC>CTC	p.P183L	DPH2_uc001cla.2_Intron|DPH2_uc010okk.1_Missense_Mutation_p.P48L|DPH2_uc001clb.2_Missense_Mutation_p.P107L	NM_001384	NP_001375	Q9BQC3	DPH2_HUMAN	diphthamide biosynthesis protein 2 isoform a	183					peptidyl-diphthamide biosynthetic process from peptidyl-histidine	cytoplasm				ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0511)				CCAGCTTTTCCCCAACCAGTG	0.607													27	38					0	0	1	0	0
PTCH2	8643	broad.mit.edu	37	1	45294229	45294229	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:45294229G>A	uc010olf.1	-	12	1551	c.1539C>T	c.(1537-1539)TTC>TTT	p.F513F	PTCH2_uc010olg.1_Silent_p.F211F	NM_003738	NP_003729	Q9Y6C5	PTC2_HUMAN	patched 2	513	SSD.|Helical; (Potential).				protein complex assembly|spermatogenesis	integral to plasma membrane	hedgehog receptor activity			lung(6)|breast(6)|central_nervous_system(3)|skin(2)|ovary(1)	18	Acute lymphoblastic leukemia(166;0.155)					CAGCCATGAGGAAGGCGGCCA	0.657									Basal_Cell_Nevus_syndrome				7	19					0	0	1	0	0
CYP4A11	1579	broad.mit.edu	37	1	47395846	47395846	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:47395846C>T	uc001cqp.3	-	12	1552	c.1501G>A	c.(1501-1503)GGA>AGA	p.G501R		NM_000778	NP_000769	Q02928	CP4AB_HUMAN	cytochrome P450, family 4, subfamily A,	501			NGIHLRLRRLPNPCEDKDQL -> MESTCVSGGSLTLVKTR TSFEGLHLPSCLPDPRFCPLPVCPYPVFCLPTFPSSHLPAV PQSACPSLSHLSPGLPTCLSTCLLPTCISCWEKS (in CYP4A11V).		long-chain fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding|oxygen binding			ovary(2)|skin(2)	4					NADH(DB00157)	AGGTGGATTCCATTTTTGGAT	0.483													44	36					0	0	1	0	0
ELAVL4	1996	broad.mit.edu	37	1	50661416	50661416	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:50661416G>A	uc001csb.2	+	5	960	c.692G>A	c.(691-693)CGG>CAG	p.R231Q	ELAVL4_uc001cry.3_Missense_Mutation_p.R234Q|ELAVL4_uc001crz.3_Missense_Mutation_p.R231Q|ELAVL4_uc001csa.3_Missense_Mutation_p.R248Q|ELAVL4_uc001csc.3_Missense_Mutation_p.R231Q|ELAVL4_uc009vyu.2_Missense_Mutation_p.R236Q|ELAVL4_uc010omz.1_Missense_Mutation_p.R236Q	NM_021952	NP_068771	P26378	ELAV4_HUMAN	ELAV-like 4 isoform 1	231					mRNA processing		AU-rich element binding|mRNA 3'-UTR binding|nucleotide binding			ovary(1)|pancreas(1)	2						TCCCCCAACCGGCGCTACCCA	0.602													44	48					0	0	1	0	0
ZFYVE9	9372	broad.mit.edu	37	1	52705095	52705095	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:52705095C>T	uc001cto.2	+	4	2178	c.2006C>T	c.(2005-2007)CCA>CTA	p.P669L	ZFYVE9_uc001ctn.2_Missense_Mutation_p.P669L|ZFYVE9_uc001ctp.2_Missense_Mutation_p.P669L	NM_004799	NP_004790	O95405	ZFYV9_HUMAN	zinc finger, FYVE domain containing 9 isoform 3	669					endocytosis|SMAD protein complex assembly|SMAD protein import into nucleus|transforming growth factor beta receptor signaling pathway	early endosome membrane	metal ion binding|protein binding|receptor activity|serine-type peptidase activity			ovary(2)|lung(2)|central_nervous_system(2)|skin(2)	8						CCAGATAGCCCAGATAATGAT	0.468													26	70					0	0	1	0	0
ZYG11B	79699	broad.mit.edu	37	1	53237048	53237048	+	Missense_Mutation	SNP	T	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:53237048T>A	uc001cuj.2	+	3	748	c.553T>A	c.(553-555)TTG>ATG	p.L185M	ZYG11B_uc009vzg.2_RNA|ZYG11B_uc010onj.1_Missense_Mutation_p.L176M	NM_024646	NP_078922	Q9C0D3	ZY11B_HUMAN	zyg-11 homolog B	185	LRR 1.						protein binding			upper_aerodigestive_tract(2)|ovary(1)|pancreas(1)	4						AGTTGCCTCATTGCCAAGATT	0.478													19	60					0	0	1	0	0
ECHDC2	55268	broad.mit.edu	37	1	53370377	53370377	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:53370377C>T	uc001cup.3	-	7	889	c.643G>A	c.(643-645)GAG>AAG	p.E215K	ECHDC2_uc001cun.2_Missense_Mutation_p.E138K|ECHDC2_uc001cuo.3_Missense_Mutation_p.E184K|ECHDC2_uc010onk.1_Missense_Mutation_p.E169K	NM_018281	NP_060751	Q86YB7	ECHD2_HUMAN	enoyl Coenzyme A hydratase domain containing 2	215					fatty acid metabolic process	mitochondrion	lyase activity			central_nervous_system(1)	1						TCCCCCTCCTCGTTCTGGGCC	0.667													10	33					0	0	1	0	0
TMEM48	55706	broad.mit.edu	37	1	54269674	54269674	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:54269674G>A	uc001cvs.2	-	10	1234	c.993C>T	c.(991-993)GCC>GCT	p.A331A	TMEM48_uc010onu.1_Silent_p.A291A|TMEM48_uc001cvt.2_Silent_p.A208A|TMEM48_uc009vzk.2_RNA|TMEM48_uc010onv.1_5'UTR	NM_018087	NP_060557	Q9BTX1	NDC1_HUMAN	transmembrane protein 48	331	Cytoplasmic (Potential).				mRNA transport|nuclear pore complex assembly|nuclear pore distribution|protein transport|transmembrane transport	nuclear membrane|nuclear pore	protein binding|structural constituent of nuclear pore			ovary(1)|pancreas(1)	2						GGTCCTGCAAGGCTAAATACT	0.343													46	69					0	0	1	0	0
YIPF1	54432	broad.mit.edu	37	1	54344369	54344369	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:54344369G>A	uc001cvu.2	-	5	559	c.222C>T	c.(220-222)TCC>TCT	p.S74S	YIPF1_uc001cvv.2_RNA|YIPF1_uc001cvw.2_RNA|YIPF1_uc001cvx.2_RNA|YIPF1_uc001cvy.2_RNA	NM_018982	NP_061855	Q9Y548	YIPF1_HUMAN	Yip1 domain family, member 1	74	Cytoplasmic (Potential).					integral to membrane|transport vesicle				large_intestine(1)|ovary(1)	2						TCCAGAAGGGGGAGCTTTTCT	0.408													11	40					0	0	1	0	0
ACOT11	26027	broad.mit.edu	37	1	55070051	55070051	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:55070051G>A	uc001cxm.1	+	12	1267	c.1185G>A	c.(1183-1185)TTG>TTA	p.L395L	ACOT11_uc001cxj.1_Silent_p.L273L|ACOT11_uc001cxl.1_Silent_p.L395L	NM_015547	NP_056362	Q8WXI4	ACO11_HUMAN	thioesterase, adipose associated isoform BFIT1	395	START.				fatty acid metabolic process|intracellular signal transduction|response to cold		acyl-CoA thioesterase activity|carboxylesterase activity			central_nervous_system(1)	1						TCTCCTCCTTGAAGATGCTTG	0.552													11	54					0	0	1	0	0
ACOT11	26027	broad.mit.edu	37	1	55096543	55096543	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:55096543T>C	uc001cxm.1	+	16	1848	c.1766T>C	c.(1765-1767)CTT>CCT	p.L589P		NM_015547	NP_056362	Q8WXI4	ACO11_HUMAN	thioesterase, adipose associated isoform BFIT1	589					fatty acid metabolic process|intracellular signal transduction|response to cold		acyl-CoA thioesterase activity|carboxylesterase activity			central_nervous_system(1)	1						ctgagtactcttaaagcaatc	0													11	8					0	0	1	0	0
C1orf175	374977	broad.mit.edu	37	1	55118812	55118812	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:55118812G>A	uc010ooe.1	+	3	537	c.213G>A	c.(211-213)GAG>GAA	p.E71E	C1orf175_uc001cxq.2_RNA|C1orf175_uc001cxo.2_Silent_p.E71E|C1orf175_uc010ooc.1_Intron|C1orf175_uc001cxs.2_RNA|C1orf175_uc010ood.1_Intron|C1orf175_uc010oof.1_RNA|C1orf175_uc001cxr.1_RNA|C1orf175_uc010oog.1_Silent_p.E71E|C1orf175_uc010ooh.1_RNA|C1orf175_uc009vzq.1_RNA|C1orf175_uc001cxt.1_RNA	NM_001039464	NP_001034553	Q68CQ1	HEAT8_HUMAN	hypothetical protein LOC374977	71						integral to membrane	binding				0						TCTCAGGGGAGGCCTCAGGCC	0.547													24	43					0	0	1	0	0
PPAP2B	8613	broad.mit.edu	37	1	56962279	56962279	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:56962279C>T	uc001cyj.1	-	7	1381	c.880G>A	c.(880-882)GAA>AAA	p.E294K		NM_177414	NP_803133	O14495	LPP3_HUMAN	phosphatidic acid phosphatase type 2B	294	Cytoplasmic (Potential).				canonical Wnt receptor signaling pathway involved in positive regulation of cell-cell adhesion|canonical Wnt receptor signaling pathway involved in positive regulation of endothelial cell migration|canonical Wnt receptor signaling pathway involved in positive regulation of wound healing|germ cell migration|homotypic cell-cell adhesion|negative regulation of protein phosphorylation|positive regulation of sequence-specific DNA binding transcription factor activity|protein stabilization|sphingolipid metabolic process	adherens junction|Golgi apparatus|integral to membrane	phosphatidate phosphatase activity|phosphoprotein phosphatase activity|protein binding|sphingosine-1-phosphate phosphatase activity				0						GAAAGGATTTCCTTCCGGATA	0.478													15	60					0	0	1	0	0
KANK4	163782	broad.mit.edu	37	1	62739291	62739291	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:62739291G>A	uc001dah.3	-	3	1862	c.1485C>T	c.(1483-1485)CTC>CTT	p.L495L	KANK4_uc001dai.3_Intron|KANK4_uc001dag.3_5'Flank	NM_181712	NP_859063	Q5T7N3	KANK4_HUMAN	ankyrin repeat domain 38	495										ovary(3)|skin(2)|lung(1)	6						GTTCAGTGGAGAGGAAGCTAT	0.577													41	44					0	0	1	0	0
KANK4	163782	broad.mit.edu	37	1	62740506	62740506	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:62740506G>A	uc001dah.3	-	3	647	c.270C>T	c.(268-270)AAC>AAT	p.N90N	KANK4_uc001dai.3_Intron|KANK4_uc001dag.3_5'Flank	NM_181712	NP_859063	Q5T7N3	KANK4_HUMAN	ankyrin repeat domain 38	90										ovary(3)|skin(2)|lung(1)	6						CGGGAGACCAGTTTTGGAGGG	0.612													58	53					0	0	1	0	0
KANK4	163782	broad.mit.edu	37	1	62740738	62740738	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:62740738C>T	uc001dah.3	-	3	415	c.38G>A	c.(37-39)GGG>GAG	p.G13E	KANK4_uc001dai.3_Intron|KANK4_uc001dag.3_5'Flank	NM_181712	NP_859063	Q5T7N3	KANK4_HUMAN	ankyrin repeat domain 38	13										ovary(3)|skin(2)|lung(1)	6						CTCTTCATCCCCCTGAGAGGA	0.438													25	86					0	0	1	0	0
CACHD1	57685	broad.mit.edu	37	1	65099753	65099753	+	Silent	SNP	C	G	G			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:65099753C>G	uc001dbo.1	+	7	768	c.663C>G	c.(661-663)ACC>ACG	p.T221T	CACHD1_uc001dbp.1_5'UTR|CACHD1_uc001dbq.1_5'UTR	NM_020925	NP_065976	Q5VU97	CAHD1_HUMAN	cache domain containing 1	272	Extracellular (Potential).|VWFA.				calcium ion transport	integral to membrane				ovary(2)	2						TGGCAGATACCGTCCGGACTT	0.398													7	45					0	0	1	0	0
LEPR	3953	broad.mit.edu	37	1	66081851	66081851	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:66081851C>T	uc001dci.2	+	15	2358	c.2156C>T	c.(2155-2157)TCA>TTA	p.S719L	LEPR_uc001dcg.2_Missense_Mutation_p.S719L|LEPR_uc001dch.2_Missense_Mutation_p.S719L|LEPR_uc009waq.2_Intron|LEPR_uc001dcj.2_Missense_Mutation_p.S719L|LEPR_uc001dck.2_Missense_Mutation_p.S719L	NM_002303	NP_002294	P48357	LEPR_HUMAN	leptin receptor isoform 1	719	Extracellular (Potential).|Fibronectin type-III 3.				energy reserve metabolic process|multicellular organismal development	extracellular region|integral to membrane|plasma membrane	cytokine receptor activity			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(397;0.00722)|KIRC - Kidney renal clear cell carcinoma(1967;0.094)		GCCATCAATTCAATTGGTGCT	0.403													5	31					0	0	1	0	0
SGIP1	84251	broad.mit.edu	37	1	67194967	67194967	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:67194967G>A	uc001dcr.2	+	20	1980	c.1763G>A	c.(1762-1764)GGA>GAA	p.G588E	SGIP1_uc010opd.1_Missense_Mutation_p.G188E|SGIP1_uc001dcs.2_Missense_Mutation_p.G188E|SGIP1_uc001dct.2_Missense_Mutation_p.G190E|SGIP1_uc009wat.2_Missense_Mutation_p.G382E|SGIP1_uc001dcu.2_Missense_Mutation_p.G93E	NM_032291	NP_115667	Q9BQI5	SGIP1_HUMAN	SH3-domain GRB2-like (endophilin) interacting	588					positive regulation of energy homeostasis|positive regulation of feeding behavior|positive regulation of receptor-mediated endocytosis|response to dietary excess	AP-2 adaptor complex	microtubule binding|phospholipid binding|SH3 domain binding			ovary(3)	3						AAGATTACCGGAGAAATGGTG	0.423													15	47					0	0	1	0	0
LRRC7	57554	broad.mit.edu	37	1	70477607	70477607	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:70477607G>A	uc001dep.2	+	10	1048	c.1018G>A	c.(1018-1020)GAA>AAA	p.E340K	LRRC7_uc009wbg.2_5'UTR	NM_020794	NP_065845	Q96NW7	LRRC7_HUMAN	leucine rich repeat containing 7	340	LRR 14.					centrosome|focal adhesion|nucleolus	protein binding			ovary(9)|breast(2)|central_nervous_system(2)|liver(1)	14						ATTACCCAGAGAAGTGAGAAA	0.333													3	25					0	0	1	0	0
LRRC7	57554	broad.mit.edu	37	1	70541808	70541808	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:70541808C>T	uc001dep.2	+	22	4195	c.4165C>T	c.(4165-4167)CGC>TGC	p.R1389C	LRRC7_uc009wbg.2_Missense_Mutation_p.R673C|LRRC7_uc001deq.2_Missense_Mutation_p.R583C	NM_020794	NP_065845	Q96NW7	LRRC7_HUMAN	leucine rich repeat containing 7	1389						centrosome|focal adhesion|nucleolus	protein binding			ovary(9)|breast(2)|central_nervous_system(2)|liver(1)	14						CCTTCAGCATCGCAGCCGGGA	0.507													9	56					0	0	1	0	0
C1orf173	127254	broad.mit.edu	37	1	75037857	75037857	+	Silent	SNP	C	T	T	rs140378667	by1000genomes	TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:75037857C>T	uc001dgg.2	-	14	3756	c.3537G>A	c.(3535-3537)GGG>GGA	p.G1179G		NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	1179	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						TCAGTCTTTCCCCTCCTCCTT	0.493													58	76					0	0	1	0	0
LHX8	431707	broad.mit.edu	37	1	75614339	75614339	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:75614339G>A	uc001dgo.2	+	8	1446	c.782G>A	c.(781-783)AGG>AAG	p.R261K	LHX8_uc001dgq.2_Missense_Mutation_p.R200K	NM_001001933	NP_001001933	Q68G74	LHX8_HUMAN	LIM homeobox 8	261	Homeobox.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3						TTGGCAGAAAGGACAGGCTTG	0.294													5	13					0	0	1	0	0
LHX8	431707	broad.mit.edu	37	1	75622642	75622642	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:75622642C>T	uc001dgo.2	+	9	1539	c.875C>T	c.(874-876)ACC>ATC	p.T292I	LHX8_uc001dgq.2_Missense_Mutation_p.T231I	NM_001001933	NP_001001933	Q68G74	LHX8_HUMAN	LIM homeobox 8	292						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3						TCATCCTCCACCCCAGTCACA	0.507													48	138					0	0	1	0	0
LPHN2	23266	broad.mit.edu	37	1	82408935	82408935	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:82408935G>A	uc001dit.3	+	6	861	c.680G>A	c.(679-681)AGG>AAG	p.R227K	LPHN2_uc001dis.2_Intron|LPHN2_uc001diu.2_Missense_Mutation_p.R227K|LPHN2_uc001div.2_Missense_Mutation_p.R227K|LPHN2_uc009wcd.2_Missense_Mutation_p.R227K	NM_012302	NP_036434	O95490	LPHN2_HUMAN	latrophilin 2 precursor	227	Extracellular (Potential).|Olfactomedin-like.				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|latrotoxin receptor activity|sugar binding			ovary(3)|lung(3)|breast(2)|central_nervous_system(1)	9				all cancers(265;0.00142)|Epithelial(280;0.00829)|OV - Ovarian serous cystadenocarcinoma(397;0.077)|STAD - Stomach adenocarcinoma(256;0.248)		GAAAGAACGAGGAATATTGTG	0.393													11	43					0	0	1	0	0
CLCA4	22802	broad.mit.edu	37	1	87031693	87031693	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:87031693G>A	uc009wcs.2	+	6	988	c.944G>A	c.(943-945)GGA>GAA	p.G315E	CLCA4_uc009wct.2_Missense_Mutation_p.G78E|CLCA4_uc009wcu.2_Missense_Mutation_p.G135E	NM_012128	NP_036260	Q14CN2	CLCA4_HUMAN	chloride channel accessory 4	315	VWFA.					apical plasma membrane|extracellular region|integral to plasma membrane	chloride channel activity			ovary(2)	2		Lung NSC(277;0.238)		all cancers(265;0.0202)|Epithelial(280;0.0404)		GATAAGTCTGGAAGCATGGGG	0.413													16	53					0	0	1	0	0
LOC400759	400759	broad.mit.edu	37	1	89889905	89889905	+	RNA	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:89889905G>A	uc009wcy.1	+	5		c.646G>A				NR_003133				Homo sapiens cDNA, FLJ17004.												0						TGGAACAGAAGGAGAGGAGTT	0.473													72	325					0	0	1	0	0
TGFBR3	7049	broad.mit.edu	37	1	92177817	92177817	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:92177817G>A	uc001doh.2	-	13	2615	c.2149C>T	c.(2149-2151)CCC>TCC	p.P717S	TGFBR3_uc009wde.2_Missense_Mutation_p.P412S|TGFBR3_uc010osy.1_Missense_Mutation_p.P675S|TGFBR3_uc001doi.2_Missense_Mutation_p.P716S|TGFBR3_uc001doj.2_Missense_Mutation_p.P716S	NM_003243	NP_003234	Q03167	TGBR3_HUMAN	transforming growth factor, beta receptor III	717	ZP.|Extracellular (Potential).				BMP signaling pathway|cardiac epithelial to mesenchymal transition|cardiac muscle cell proliferation|cell growth|cell migration|definitive erythrocyte differentiation|heart trabecula formation|immune response|intracellular protein kinase cascade|liver development|negative regulation of cellular component movement|negative regulation of epithelial cell proliferation|palate development|pathway-restricted SMAD protein phosphorylation|response to follicle-stimulating hormone stimulus|response to luteinizing hormone stimulus|response to prostaglandin E stimulus|transforming growth factor beta receptor signaling pathway|ventricular cardiac muscle tissue morphogenesis	external side of plasma membrane|extracellular space|inhibin-betaglycan-ActRII complex|integral to plasma membrane|intracellular membrane-bounded organelle	coreceptor activity|heparin binding|PDZ domain binding|SMAD binding|transforming growth factor beta binding|transforming growth factor beta receptor activity, type III|type II transforming growth factor beta receptor binding			ovary(3)	3		all_lung(203;0.00719)|Lung NSC(277;0.0268)		all cancers(265;0.0108)|Epithelial(280;0.0825)		AACTTCTGGGGGTGCTTCTCC	0.468													12	7					0	0	1	0	0
BRDT	676	broad.mit.edu	37	1	92441921	92441921	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:92441921C>T	uc001dok.3	+	5	893	c.544C>T	c.(544-546)CCT>TCT	p.P182S	BRDT_uc001dol.3_Missense_Mutation_p.P182S|BRDT_uc010osz.1_Missense_Mutation_p.P186S|BRDT_uc009wdf.2_Missense_Mutation_p.P109S|BRDT_uc010ota.1_Missense_Mutation_p.P136S|BRDT_uc010otb.1_Missense_Mutation_p.P136S|BRDT_uc001dom.3_Missense_Mutation_p.P182S	NM_207189	NP_997072	Q58F21	BRDT_HUMAN	testis-specific bromodomain protein	182					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein serine/threonine kinase activity|transcription coactivator activity			stomach(2)|ovary(1)|lung(1)	4		all_lung(203;0.00531)|Lung NSC(277;0.0194)		all cancers(265;0.0228)|Epithelial(280;0.133)		TTCTGTATTTCCTAAGACATC	0.393													13	36					0	0	1	0	0
ABCA4	24	broad.mit.edu	37	1	94502706	94502706	+	Missense_Mutation	SNP	C	T	T	rs61752425		TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:94502706C>T	uc001dqh.2	-	25	3912	c.3808G>A	c.(3808-3810)GAA>AAA	p.E1270K		NM_000350	NP_000341	P78363	ABCA4_HUMAN	ATP-binding cassette, sub-family A member 4	1270	Cytoplasmic.				phototransduction, visible light|visual perception	integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)|skin(4)|central_nervous_system(2)|upper_aerodigestive_tract(1)|breast(1)	12		all_lung(203;0.000757)|Lung NSC(277;0.00335)		all cancers(265;0.00432)|GBM - Glioblastoma multiforme(16;0.00715)|Epithelial(280;0.171)		TTTACCTCTTCCAGGGGAGTG	0.453													35	53					0	0	1	0	0
DPYD	1806	broad.mit.edu	37	1	97658765	97658765	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:97658765C>T	uc001drv.2	-	20	2619	c.2482G>A	c.(2482-2484)GAA>AAA	p.E828K		NM_000110	NP_000101	Q12882	DPYD_HUMAN	dihydropyrimidine dehydrogenase isoform 1	828					'de novo' pyrimidine base biosynthetic process|purine base catabolic process|thymidine catabolic process|thymine catabolic process|UMP biosynthetic process|uracil catabolic process	cytosol	4 iron, 4 sulfur cluster binding|dihydroorotate oxidase activity|dihydropyrimidine dehydrogenase (NADP+) activity|electron carrier activity|flavin adenine dinucleotide binding|metal ion binding|NADP binding|protein homodimerization activity			ovary(3)|skin(3)|breast(2)	8		all_epithelial(167;0.000185)|all_lung(203;0.00318)|Lung NSC(277;0.00994)		Colorectal(170;0.0165)|Epithelial(280;0.0526)|all cancers(265;0.104)|READ - Rectum adenocarcinoma(84;0.171)|Lung(183;0.216)	Capecitabine(DB01101)|Enfuvirtide(DB00109)	CAGTAGTCTTCGATCACAGTG	0.438													22	24					0	0	1	0	0
HIAT1	64645	broad.mit.edu	37	1	100535202	100535202	+	Silent	SNP	G	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:100535202G>T	uc001dst.2	+	8	852	c.852G>T	c.(850-852)GCG>GCT	p.A284A		NM_033055	NP_149044	Q96MC6	HIAT1_HUMAN	hippocampus abundant transcript 1	284	Cytoplasmic (Potential).				transmembrane transport	integral to membrane|plasma membrane	transporter activity				0		all_epithelial(167;2.96e-06)|all_lung(203;0.00125)|Lung NSC(277;0.00131)		Epithelial(280;0.0832)|all cancers(265;0.136)|COAD - Colon adenocarcinoma(174;0.148)|Lung(183;0.195)		GTGTTGCAGCGTTTATAGCAG	0.398													21	72					3.6726e-16	3.72284e-16	1	1	0
SYPL2	284612	broad.mit.edu	37	1	110022028	110022028	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:110022028G>A	uc001dxp.2	+	6	1043	c.677G>A	c.(676-678)TGG>TAG	p.W226*	SYPL2_uc010ovk.1_Nonsense_Mutation_p.W162*	NM_001040709	NP_001035799	Q5VXT5	SYPL2_HUMAN	mitsugumin 29	226	Helical; (Potential).|MARVEL.					integral to membrane|synaptic vesicle	transporter activity			ovary(1)	1		all_epithelial(167;2.83e-05)|all_lung(203;0.00016)|Lung NSC(277;0.000318)|Breast(1374;0.244)		Colorectal(144;0.0129)|Lung(183;0.0436)|READ - Rectum adenocarcinoma(129;0.0698)|Epithelial(280;0.0808)|all cancers(265;0.0869)|LUSC - Lung squamous cell carcinoma(189;0.231)		TTCTTCCTGTGGGCCGGGAAC	0.408													98	327					0	0	1	0	0
AHCYL1	10768	broad.mit.edu	37	1	110551662	110551662	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:110551662C>T	uc001dyx.2	+	2	494	c.127C>T	c.(127-129)CAG>TAG	p.Q43*	AHCYL1_uc010ovw.1_5'UTR|AHCYL1_uc001dyy.2_5'UTR|AHCYL1_uc010ovx.1_5'UTR	NM_006621	NP_006612	O43865	SAHH2_HUMAN	S-adenosylhomocysteine hydrolase-like 1	43					one-carbon metabolic process	endoplasmic reticulum	adenosylhomocysteinase activity			ovary(1)	1		all_epithelial(167;3.58e-05)|all_lung(203;0.000116)|Lung NSC(277;0.000233)		Lung(183;0.0259)|Colorectal(144;0.123)|all cancers(265;0.134)|Epithelial(280;0.141)|LUSC - Lung squamous cell carcinoma(189;0.143)		ATAGCAAATCCAGTTTGCTGA	0.393													16	24					0	0	1	0	0
KCNA10	3744	broad.mit.edu	37	1	111061365	111061366	+	Missense_Mutation	DNP	AT	GC	GC			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:111061365_111061366AT>GC	uc001dzt.1	-	1	432_433	c.44_45AT>GC	c.(43-45)AAT>AGC	p.N15S		NM_005549	NP_005540	Q16322	KCA10_HUMAN	potassium voltage-gated channel, shaker-related	15						voltage-gated potassium channel complex	intracellular cyclic nucleotide activated cation channel activity|voltage-gated potassium channel activity			ovary(3)|large_intestine(1)	4		all_cancers(81;4.57e-06)|all_epithelial(167;1.52e-05)|all_lung(203;0.000152)|Lung NSC(277;0.000301)		Lung(183;0.0238)|all cancers(265;0.0874)|Colorectal(144;0.103)|Epithelial(280;0.116)|LUSC - Lung squamous cell carcinoma(189;0.134)		AATTATCAAAATTGACCAGCGC	0.53													11	14					0	0	1	0	0
KCNA3	3738	broad.mit.edu	37	1	111216419	111216419	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:111216419G>A	uc001dzv.1	-	1	1237	c.1013C>T	c.(1012-1014)CCT>CTT	p.P338L		NM_002232	NP_002223	P22001	KCNA3_HUMAN	potassium voltage-gated channel, shaker-related	338	Helical; Name=Segment S3; (Potential).					voltage-gated potassium channel complex	delayed rectifier potassium channel activity			ovary(4)|pancreas(1)	5		all_cancers(81;3.92e-06)|all_epithelial(167;1.28e-05)|all_lung(203;0.000199)|Lung NSC(277;0.000398)		Lung(183;0.0235)|Colorectal(144;0.0306)|all cancers(265;0.0752)|Epithelial(280;0.0821)|COAD - Colon adenocarcinoma(174;0.132)|LUSC - Lung squamous cell carcinoma(189;0.133)		GATAAAATAAGGAATGATGGC	0.542													36	50					0	0	1	0	0
AMPD1	270	broad.mit.edu	37	1	115226943	115226943	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:115226943G>A	uc001efe.1	-	5	508	c.424C>T	c.(424-426)CGG>TGG	p.R142W	AMPD1_uc001eff.1_Missense_Mutation_p.R138W	NM_000036	NP_000027	P23109	AMPD1_HUMAN	adenosine monophosphate deaminase 1 (isoform M)	142					purine base metabolic process|purine ribonucleoside monophosphate biosynthetic process|purine-containing compound salvage	cytosol	AMP deaminase activity|metal ion binding			ovary(2)|large_intestine(1)|skin(1)	4	all_epithelial(7;7.83e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)	Adenosine monophosphate(DB00131)	CATAGTGCCCGATACAGACCT	0.413													17	21					0	0	1	0	0
SYCP1	6847	broad.mit.edu	37	1	115537408	115537408	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:115537408G>A	uc001efr.2	+	31	3002	c.2793G>A	c.(2791-2793)AAG>AAA	p.K931K	SYCP1_uc010owt.1_RNA|SYCP1_uc001efq.2_Silent_p.K931K|SYCP1_uc009wgw.2_Silent_p.K906K	NM_003176	NP_003167	Q15431	SYCP1_HUMAN	synaptonemal complex protein 1	931					cell division|reciprocal meiotic recombination|spermatogenesis|synaptonemal complex assembly		DNA binding			skin(1)	1	Lung SC(450;0.211)	all_cancers(81;8.65e-08)|all_epithelial(167;3.32e-07)|all_lung(203;6.55e-06)|Lung NSC(69;1.11e-05)|Acute lymphoblastic leukemia(138;0.221)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		CACCAAAAAAGGTAGCTTTTA	0.299													7	14					0	0	1	0	0
PTGFRN	5738	broad.mit.edu	37	1	117509537	117509537	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:117509537C>T	uc001egv.1	+	6	1781	c.1644C>T	c.(1642-1644)TCC>TCT	p.S548S		NM_020440	NP_065173	Q9P2B2	FPRP_HUMAN	prostaglandin F2 receptor negative regulator	548	Ig-like C2-type 5.|Extracellular (Potential).					endoplasmic reticulum membrane|Golgi apparatus|integral to membrane	protein binding			liver(1)	1	Lung SC(450;0.225)	all_cancers(81;0.00104)|all_lung(203;8.97e-05)|all_epithelial(167;0.000139)|Lung NSC(69;0.000446)		Lung(183;0.0704)|LUSC - Lung squamous cell carcinoma(189;0.227)|Colorectal(144;0.248)		TTCCAGATTCCGTGCTTGTGG	0.383													9	19					0	0	1	0	0
TBX15	6913	broad.mit.edu	37	1	119474335	119474335	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:119474335G>A	uc001ehl.1	-	2	323	c.8C>T	c.(7-9)TCC>TTC	p.S3F		NM_152380	NP_689593	Q96SF7	TBX15_HUMAN	T-box 15	109						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			large_intestine(1)|pancreas(1)	2	all_neural(166;0.117)	all_cancers(81;0.000692)|all_lung(203;3.05e-06)|Lung NSC(69;2.13e-05)|all_epithelial(167;0.000237)		Lung(183;0.044)|LUSC - Lung squamous cell carcinoma(189;0.141)		CTCCTCCATGGAAGACATGGC	0.537													14	40					0	0	1	0	0
HAO2	51179	broad.mit.edu	37	1	119927624	119927624	+	Missense_Mutation	SNP	G	A	A	rs144704512		TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:119927624G>A	uc001ehq.1	+	5	861	c.509G>A	c.(508-510)CGA>CAA	p.R170Q	HAO2_uc001ehr.1_Missense_Mutation_p.R170Q	NM_001005783	NP_001005783	Q9NYQ3	HAOX2_HUMAN	hydroxyacid oxidase 2	170	FMN hydroxy acid dehydrogenase.				fatty acid alpha-oxidation	peroxisome	(S)-2-hydroxy-acid oxidase activity			ovary(2)|skin(2)	4	all_neural(166;0.187)	all_lung(203;1.06e-06)|Lung NSC(69;7.5e-06)|all_epithelial(167;0.000284)		Lung(183;0.0155)|LUSC - Lung squamous cell carcinoma(189;0.0856)		CATGACATTCGAAACCAGTTG	0.403													16	33					0	0	1	0	0
HAO2	51179	broad.mit.edu	37	1	119934865	119934865	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:119934865C>T	uc001ehq.1	+	7	1256	c.904C>T	c.(904-906)CCA>TCA	p.P302S	HAO2_uc001ehr.1_Missense_Mutation_p.P302S	NM_001005783	NP_001005783	Q9NYQ3	HAOX2_HUMAN	hydroxyacid oxidase 2	302	FMN hydroxy acid dehydrogenase.				fatty acid alpha-oxidation	peroxisome	(S)-2-hydroxy-acid oxidase activity			ovary(2)|skin(2)	4	all_neural(166;0.187)	all_lung(203;1.06e-06)|Lung NSC(69;7.5e-06)|all_epithelial(167;0.000284)		Lung(183;0.0155)|LUSC - Lung squamous cell carcinoma(189;0.0856)		TCTTGGGAGACCAATCCTATG	0.493													9	42					0	0	1	0	0
NOTCH2	4853	broad.mit.edu	37	1	120497716	120497716	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:120497716G>C	uc001eik.2	-	13	2422	c.2166C>G	c.(2164-2166)AAC>AAG	p.N722K	NOTCH2_uc001eil.2_Missense_Mutation_p.N722K|NOTCH2_uc001eim.3_Missense_Mutation_p.N639K	NM_024408	NP_077719	Q04721	NOTC2_HUMAN	notch 2 preproprotein	722	EGF-like 19.|Extracellular (Potential).				anti-apoptosis|bone remodeling|cell cycle arrest|cell fate determination|cell growth|hemopoiesis|induction of apoptosis|negative regulation of cell proliferation|nervous system development|Notch receptor processing|Notch signaling pathway|organ morphogenesis|positive regulation of Ras protein signal transduction|regulation of transcription, DNA-dependent|stem cell maintenance|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|ligand-regulated transcription factor activity|protein binding|receptor activity			lung(8)|haematopoietic_and_lymphoid_tissue(7)|ovary(4)|central_nervous_system(2)|skin(2)|kidney(2)|breast(1)|prostate(1)	27	all_neural(166;0.153)	all_lung(203;1.96e-06)|Lung NSC(69;1.47e-05)|all_epithelial(167;0.000809)		Lung(183;0.0242)|LUSC - Lung squamous cell carcinoma(189;0.133)		TCAGGCATTCGTTCACCTGTG	0.522			N|F|Mis		marginal zone lymphoma|DLBCL				Alagille_Syndrome				342	432					0	0	1	0	0
CHD1L	9557	broad.mit.edu	37	1	146726560	146726560	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:146726560A>T	uc001epm.3	+	3	339	c.276A>T	c.(274-276)TTA>TTT	p.L92F	CHD1L_uc001epn.3_5'UTR|CHD1L_uc010ozo.1_Intron|CHD1L_uc009wjg.2_RNA|CHD1L_uc009wjh.2_Missense_Mutation_p.L92F|CHD1L_uc010ozp.1_Intron|CHD1L_uc001epo.3_Intron	NM_004284	NP_004275	Q86WJ1	CHD1L_HUMAN	chromodomain helicase DNA binding protein	92	Helicase ATP-binding.				chromatin remodeling|DNA repair	cytoplasm|nucleus|plasma membrane	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding			ovary(3)|lung(2)|upper_aerodigestive_tract(1)	6	all_hematologic(923;0.0487)					CAGGAAGATTAAATGATGAAG	0.378													24	32					0	0	1	0	0
TARS2	80222	broad.mit.edu	37	1	150471438	150471438	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:150471438C>T	uc001euq.2	+	12	1474	c.1467C>T	c.(1465-1467)TCC>TCT	p.S489S	TARS2_uc010pcd.1_RNA|TARS2_uc001eur.2_Silent_p.S407S|TARS2_uc009wlt.2_Silent_p.S115S|TARS2_uc009wls.2_Silent_p.S359S	NM_025150	NP_079426	Q9BW92	SYTM_HUMAN	threonyl-tRNA synthetase 2, mitochondrial	489					threonyl-tRNA aminoacylation	mitochondrial matrix	ATP binding|threonine-tRNA ligase activity			ovary(1)	1	all_cancers(9;3.13e-53)|all_epithelial(9;3.74e-43)|all_lung(15;2.43e-34)|Lung NSC(24;8.86e-31)|Breast(34;0.000326)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0395)|Hepatocellular(266;0.108)|Melanoma(130;0.128)|Colorectal(459;0.171)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0757)|all cancers(9;1.51e-21)|BRCA - Breast invasive adenocarcinoma(12;0.000734)|LUSC - Lung squamous cell carcinoma(543;0.171)|STAD - Stomach adenocarcinoma(528;0.206)		L-Threonine(DB00156)	TTGGCTTCTCCTTCCGCCTGG	0.567													72	52					0	0	1	0	0
SEMA6C	10500	broad.mit.edu	37	1	151110475	151110475	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:151110475G>A	uc001ewu.2	-	9	954	c.654C>T	c.(652-654)TCC>TCT	p.S218S	SEMA6C_uc001ewv.2_Silent_p.S218S|SEMA6C_uc001eww.2_Intron|SEMA6C_uc010pcq.1_Silent_p.S218S|SEMA6C_uc009wml.1_RNA	NM_030913	NP_112175	Q9H3T2	SEM6C_HUMAN	semaphorin Y precursor	218	Extracellular (Potential).|Sema.					integral to membrane	receptor activity			ovary(1)|skin(1)	2	Lung SC(34;0.00471)|Ovarian(49;0.0147)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.211)			GGAGCCACTTGGAGTCATACT	0.617													18	26					0	0	1	0	0
TUFT1	7286	broad.mit.edu	37	1	151536460	151536461	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:151536460_151536461CC>TT	uc001eyl.2	+	4	380_381	c.318_319CC>TT	c.(316-321)ATCCAG>ATTTAG	p.Q107*	TUFT1_uc001eym.2_Nonsense_Mutation_p.Q82*|TUFT1_uc010pdf.1_Nonsense_Mutation_p.Q126*|TUFT1_uc010pdg.1_Nonsense_Mutation_p.Q55*	NM_020127	NP_064512	Q9NNX1	TUFT1_HUMAN	tuftelin 1 isoform 1	107	Potential.				bone mineralization|odontogenesis	cytoplasm|extracellular region	structural constituent of tooth enamel				0	Ovarian(49;0.0273)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		LUSC - Lung squamous cell carcinoma(543;0.181)			TCCAGTACATCCAGGAGGTGGG	0.446													16	34					0	0	1	0	0
MRPL9	65005	broad.mit.edu	37	1	151733957	151733958	+	Missense_Mutation	DNP	AG	TA	TA			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:151733957_151733958AG>TA	uc001eyv.2	-	5	642_643	c.557_558CT>TA	c.(556-558)CCT>CTA	p.P186L	MRPL9_uc009wmz.2_RNA	NM_031420	NP_113608	Q9BYD2	RM09_HUMAN	mitochondrial ribosomal protein L9 precursor	186					translation	mitochondrial ribosome	structural constituent of ribosome			ovary(1)	1	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.14)		LUSC - Lung squamous cell carcinoma(543;0.181)			CAACTATTTCAGGGTTCAGCTC	0.465													17	49					0	0	1	0	0
RORC	6097	broad.mit.edu	37	1	151787050	151787050	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:151787050C>T	uc001ezh.2	-	6	1041	c.933G>A	c.(931-933)AAG>AAA	p.K311K	RORC_uc001ezg.2_Silent_p.K290K|RORC_uc010pdo.1_Silent_p.K365K|RORC_uc010pdp.1_Silent_p.K311K	NM_005060	NP_005051	P51449	RORG_HUMAN	RAR-related orphan receptor C isoform a	311	Ligand-binding.				regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)|skin(1)	2	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.14)		LUSC - Lung squamous cell carcinoma(543;0.181)			CTGGCCTCACCTTCCTCTGGT	0.647													7	9					0	0	1	0	0
TCHHL1	126637	broad.mit.edu	37	1	152059754	152059754	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:152059754G>A	uc001ezo.1	-	3	469	c.404C>T	c.(403-405)CCT>CTT	p.P135L		NM_001008536	NP_001008536	Q5QJ38	TCHL1_HUMAN	trichohyalin-like 1	135							calcium ion binding			ovary(1)|skin(1)	2	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.246)			CATTCCTGAAGGAAGCATCCT	0.483													42	35					0	0	1	0	0
TCHHL1	126637	broad.mit.edu	37	1	152059796	152059796	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:152059796C>T	uc001ezo.1	-	3	427	c.362G>A	c.(361-363)TGG>TAG	p.W121*		NM_001008536	NP_001008536	Q5QJ38	TCHL1_HUMAN	trichohyalin-like 1	121							calcium ion binding			ovary(1)|skin(1)	2	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.246)			TCCCACTGTCCACTGACCATC	0.443													23	70					0	0	1	0	0
TCHH	7062	broad.mit.edu	37	1	152081679	152081679	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:152081679G>A	uc001ezp.2	-	2	4014	c.4014C>T	c.(4012-4014)TTC>TTT	p.F1338F	TCHH_uc009wne.1_Silent_p.F1338F	NM_007113	NP_009044	Q07283	TRHY_HUMAN	trichohyalin	1338	23 X 26 AA approximate tandem repeats.				keratinization	cytoskeleton	calcium ion binding			ovary(3)|kidney(1)|central_nervous_system(1)	5	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CCTCCTCGCGGAATTTTCTGT	0.552													55	186					0	0	1	0	0
RPTN	126638	broad.mit.edu	37	1	152128229	152128229	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:152128229G>A	uc001ezs.1	-	3	1411	c.1346C>T	c.(1345-1347)TCC>TTC	p.S449F		NM_001122965	NP_001116437	Q6XPR3	RPTN_HUMAN	repetin	449	Gln-rich.					proteinaceous extracellular matrix	calcium ion binding				0						ACCATAGTGGGAATTCTGGCC	0.537													293	436					0	0	1	0	0
HRNR	388697	broad.mit.edu	37	1	152187656	152187656	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:152187656C>T	uc001ezt.1	-	3	6525	c.6449G>A	c.(6448-6450)GGA>GAA	p.G2150E		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	2150					keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TGAGCTAGATCCGTGTCGTTC	0.582													30	789					0	0	1	0	0
FLG2	388698	broad.mit.edu	37	1	152326252	152326252	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:152326252G>A	uc001ezw.3	-	3	4083	c.4010C>T	c.(4009-4011)TCC>TTC	p.S1337F	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	1337							calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			AGATGTTCTGGAACCTGTCTG	0.488													43	128					0	0	1	0	0
FLG2	388698	broad.mit.edu	37	1	152329347	152329347	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:152329347C>T	uc001ezw.3	-	3	988	c.915G>A	c.(913-915)GGG>GGA	p.G305G	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	305	Ser-rich.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GATTTCCTTGCCCTCCAAATC	0.478													70	81					0	0	1	0	0
LCE5A	254910	broad.mit.edu	37	1	152484100	152484100	+	Silent	SNP	C	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:152484100C>A	uc001ezy.2	+	2	266	c.90C>A	c.(88-90)CCC>CCA	p.P30P	CRCT1_uc001ezz.2_5'Flank	NM_178438	NP_848525	Q5TCM9	LCE5A_HUMAN	late cornified envelope 5A	30	Cys-rich.				keratinization					ovary(1)	1	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			agtgtcctcccaagtgtcccc	0.473													17	28					3.45872e-05	3.48133e-05	1	1	0
IVL	3713	broad.mit.edu	37	1	152882344	152882344	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:152882344C>T	uc001fau.2	+	2	117	c.71C>T	c.(70-72)CCT>CTT	p.P24L		NM_005547	NP_005538	P07476	INVO_HUMAN	involucrin	24					isopeptide cross-linking via N6-(L-isoglutamyl)-L-lysine|keratinization|response to UV-B	cornified envelope|cytoplasm	protein binding, bridging|structural molecule activity			ovary(3)	3	Lung NSC(65;3.97e-29)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			AAGACTGTTCCTCCTCCAGTC	0.557													36	33					0	0	1	0	0
SPRR3	6707	broad.mit.edu	37	1	152975752	152975752	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:152975752C>T	uc001fax.3	+	3	406	c.256C>T	c.(256-258)CCT>TCT	p.P86S	SPRR3_uc001faz.3_Missense_Mutation_p.P86S|SPRR3_uc001fay.2_Missense_Mutation_p.P78S	NM_005416	NP_005407	Q9UBC9	SPRR3_HUMAN	small proline-rich protein 3	86	6.|14 X 8 AA approximate tandem repeats.				keratinization|peptide cross-linking|wound healing	cytoplasm	protein binding|structural molecule activity			skin(1)	1	Lung NSC(65;1.49e-28)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			TACCAAGGTCCCTGAGCCAGG	0.602													13	46					0	0	1	0	0
NUP210L	91181	broad.mit.edu	37	1	153974234	153974234	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:153974234C>T	uc001fdw.2	-	36	5230	c.5158G>A	c.(5158-5160)GAC>AAC	p.D1720N	NUP210L_uc009woq.2_Missense_Mutation_p.D629N|NUP210L_uc010peh.1_Intron	NM_207308	NP_997191	Q5VU65	P210L_HUMAN	nucleoporin 210kDa-like isoform 1	1720						integral to membrane				skin(5)|ovary(4)|large_intestine(1)|central_nervous_system(1)	11	all_lung(78;9.35e-31)|Lung NSC(65;1.33e-28)|Hepatocellular(266;0.0877)|Melanoma(130;0.128)		LUSC - Lung squamous cell carcinoma(543;0.151)|Colorectal(543;0.198)			AGAACTCTGTCCACTCCCAGT	0.398													84	106					0	0	1	0	0
CHRNB2	1141	broad.mit.edu	37	1	154544000	154544000	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:154544000C>T	uc001ffg.2	+	5	965	c.701C>T	c.(700-702)CCG>CTG	p.P234L		NM_000748	NP_000739	P17787	ACHB2_HUMAN	neuronal nicotinic acetylcholine receptor beta 2	234	Helical; (Potential).				B cell activation|behavioral response to nicotine|calcium ion transport|central nervous system projection neuron axonogenesis|lateral geniculate nucleus development|locomotory behavior|membrane depolarization|memory|negative regulation of action potential|optic nerve morphogenesis|positive regulation of B cell proliferation|positive regulation of dopamine secretion|regulation of circadian sleep/wake cycle, REM sleep|regulation of dendrite morphogenesis|regulation of dopamine metabolic process|regulation of synaptogenesis|response to cocaine|response to ethanol|response to hypoxia|sensory perception of pain|sensory perception of sound|smooth muscle contraction|social behavior|synaptic transmission involved in micturition|synaptic transmission, cholinergic|vestibulocochlear nerve development|visual learning|visual perception	cell junction|external side of plasma membrane|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity				0	all_lung(78;2.22e-29)|Lung NSC(65;3.66e-27)|Hepatocellular(266;0.0877)|all_hematologic(923;0.088)		LUSC - Lung squamous cell carcinoma(543;0.185)		Nicotine(DB00184)	CGCCGCAAGCCGCTCTTCTAC	0.582													24	78					0	0	1	0	0
SYT11	23208	broad.mit.edu	37	1	155851143	155851143	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:155851143C>T	uc001fmg.2	+	4	1403	c.1140C>T	c.(1138-1140)CTC>CTT	p.L380L	SYT11_uc010pgq.1_Silent_p.L73L	NM_152280	NP_689493	Q9BT88	SYT11_HUMAN	synaptotagmin XI	380	C2 2.|Cytoplasmic (Potential).					cell junction|synaptic vesicle membrane	protein binding|transporter activity			ovary(1)|skin(1)	2	Hepatocellular(266;0.133)|all_hematologic(923;0.145)|all_neural(408;0.195)		OV - Ovarian serous cystadenocarcinoma(3;0.000162)			TCGAGTTCCTCGTTATCGACT	0.522													138	178					0	0	1	0	0
ARHGEF11	9826	broad.mit.edu	37	1	156937781	156937781	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:156937781G>A	uc001fqo.2	-	10	1881	c.841C>T	c.(841-843)CAG>TAG	p.Q281*	ARHGEF11_uc001fqn.2_Nonsense_Mutation_p.Q321*	NM_014784	NP_055599	O15085	ARHGB_HUMAN	Rho guanine nucleotide exchange factor (GEF) 11	281					actin cytoskeleton organization|apoptosis|axon guidance|cellular component movement|cytokinesis|establishment of cell polarity|G-protein coupled receptor protein signaling pathway|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|positive regulation of transcription, DNA-dependent|regulation of cell growth|regulation of Rho protein signal transduction|Rho protein signal transduction|striated muscle contraction	cytosol|Golgi apparatus|plasma membrane	G-protein-coupled receptor binding|GTPase activator activity|Rho guanyl-nucleotide exchange factor activity|signal transducer activity			ovary(3)|skin(2)|pleura(1)|lung(1)|kidney(1)|pancreas(1)	9	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					TCACTCACCTGGTCACCGGTT	0.567													11	37					0	0	1	0	0
FCRL5	83416	broad.mit.edu	37	1	157509071	157509071	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:157509071C>T	uc001fqu.2	-	7	1365	c.1207G>A	c.(1207-1209)GCC>ACC	p.A403T	FCRL5_uc009wsm.2_Missense_Mutation_p.A403T|FCRL5_uc010phv.1_Missense_Mutation_p.A403T|FCRL5_uc010phw.1_Missense_Mutation_p.A318T|FCRL5_uc001fqv.1_Missense_Mutation_p.A403T|FCRL5_uc010phx.1_Missense_Mutation_p.A154T	NM_031281	NP_112571	Q96RD9	FCRL5_HUMAN	Fc receptor-like 5	403	Extracellular (Potential).|Ig-like C2-type 4.					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(2)|central_nervous_system(1)	6	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.231)				CCTCTCTGGGCTTCACAGTGA	0.542													10	20					0	0	1	0	0
CD5L	922	broad.mit.edu	37	1	157805889	157805889	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:157805889C>T	uc001frk.3	-	3	255	c.112G>A	c.(112-114)GAG>AAG	p.E38K		NM_005894	NP_005885	O43866	CD5L_HUMAN	CD5 molecule-like precursor	38	SRCR 1.				apoptosis|cellular defense response	extracellular space|membrane	scavenger receptor activity			ovary(1)	1	all_hematologic(112;0.0378)		LUSC - Lung squamous cell carcinoma(543;0.24)			TGTTCCACCTCCACCCGCCCT	0.632													16	63					0	0	1	0	0
CD1C	911	broad.mit.edu	37	1	158260952	158260952	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:158260952C>T	uc001fru.2	+	2	382	c.90C>T	c.(88-90)GTC>GTT	p.V30V	CD1C_uc001frv.2_5'Flank	NM_001765	NP_001756	P29017	CD1C_HUMAN	CD1C antigen precursor	30	Extracellular (Potential).				antigen processing and presentation|T cell activation involved in immune response	endosome membrane|integral to plasma membrane	endogenous lipid antigen binding|exogenous lipid antigen binding|glycolipid binding|lipopeptide binding			ovary(2)|skin(1)|pancreas(1)	4	all_hematologic(112;0.0378)					CCTTCCATGTCATCCAGATCT	0.478													11	40					0	0	1	0	0
CD1C	911	broad.mit.edu	37	1	158261902	158261902	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:158261902C>T	uc001fru.2	+	3	649	c.357C>T	c.(355-357)GGC>GGT	p.G119G	CD1C_uc001frv.2_5'UTR	NM_001765	NP_001756	P29017	CD1C_HUMAN	CD1C antigen precursor	119	Extracellular (Potential).				antigen processing and presentation|T cell activation involved in immune response	endosome membrane|integral to plasma membrane	endogenous lipid antigen binding|exogenous lipid antigen binding|glycolipid binding|lipopeptide binding			ovary(2)|skin(1)|pancreas(1)	4	all_hematologic(112;0.0378)					TGAAAGCGGGCTGTGAGCTGC	0.433													25	90					0	0	1	0	0
CD1C	911	broad.mit.edu	37	1	158262441	158262441	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:158262441G>T	uc001fru.2	+	4	958	c.666G>T	c.(664-666)TTG>TTT	p.L222F	CD1C_uc001frv.2_Missense_Mutation_p.L25F	NM_001765	NP_001756	P29017	CD1C_HUMAN	CD1C antigen precursor	222	Extracellular (Potential).|Ig-like.				antigen processing and presentation|T cell activation involved in immune response	endosome membrane|integral to plasma membrane	endogenous lipid antigen binding|exogenous lipid antigen binding|glycolipid binding|lipopeptide binding			ovary(2)|skin(1)|pancreas(1)	4	all_hematologic(112;0.0378)					GCCAGCTGTTGCTGGTTTGTC	0.522													12	49					9.05144e-12	9.15669e-12	1	1	0
OR10X1	128367	broad.mit.edu	37	1	158548718	158548718	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:158548718C>T	uc010pin.1	-	1	972	c.972G>A	c.(970-972)TTG>TTA	p.L324L		NM_001004477	NP_001004477	Q8NGY0	O10X1_HUMAN	olfactory receptor, family 10, subfamily X,	324	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					ATTATTTTTTCAAGGCAACTG	0.423													47	75					0	0	1	0	0
OR10X1	128367	broad.mit.edu	37	1	158548760	158548760	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:158548760C>T	uc010pin.1	-	1	930	c.930G>A	c.(928-930)ATG>ATA	p.M310I		NM_001004477	NP_001004477	Q8NGY0	O10X1_HUMAN	olfactory receptor, family 10, subfamily X,	310	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					AAGCATTTTTCATGTCCTTAT	0.438													48	57					0	0	1	0	0
DARC	2532	broad.mit.edu	37	1	159175263	159175264	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:159175263_159175264CC>TT	uc001fto.2	+	2	274_275	c.34_35CC>TT	c.(34-36)CCC>TTC	p.P12F	DARC_uc001ftp.3_Missense_Mutation_p.P14F	NM_002036	NP_002027	Q16570	DUFFY_HUMAN	Duffy blood group antigen isoform b	12	Extracellular (Potential).				defense response	integral to membrane|plasma membrane	C-C chemokine binding|chemokine receptor activity			ovary(1)|lung(1)	2	all_hematologic(112;0.0429)					GGAGCTCTCCCCCTCAACTGAG	0.54													22	32					0	0	1	0	0
OR10J1	26476	broad.mit.edu	37	1	159410507	159410507	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:159410507C>T	uc010piv.1	+	1	959	c.959C>T	c.(958-960)TCC>TTC	p.S320F	uc001fts.3_Intron	NM_012351	NP_036483	P30954	O10J1_HUMAN	olfactory receptor, family 10, subfamily J,	320	Cytoplasmic (Potential).				sensory perception of smell|single fertilization	integral to plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0429)					GGGAAGTTTTCCTGACCATGT	0.493													19	40					0	0	1	0	0
APCS	325	broad.mit.edu	37	1	159558247	159558247	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:159558247G>A	uc001ftv.2	+	2	517	c.421G>A	c.(421-423)GGT>AGT	p.G141S		NM_001639	NP_001630	P02743	SAMP_HUMAN	serum amyloid P component precursor	141	Pentaxin.		G -> S (in a breast cancer sample; somatic mutation).		acute-phase response|chaperone-mediated protein complex assembly|protein folding	extracellular space	metal ion binding|sugar binding|unfolded protein binding	p.G141S(1)		ovary(1)|breast(1)	2	all_hematologic(112;0.0429)					TCTGCGACAGGGTTACTTTGT	0.517													20	30					0	0	1	0	0
FCRL6	343413	broad.mit.edu	37	1	159779412	159779412	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:159779412C>T	uc001fud.3	+	5	867	c.825C>T	c.(823-825)TCC>TCT	p.S275S	FCRL6_uc001fuc.2_Silent_p.S282S|FCRL6_uc009wsz.1_Silent_p.S180S|FCRL6_uc009wta.2_Silent_p.S275S	NM_001004310	NP_001004310	Q6DN72	FCRL6_HUMAN	Fc receptor-like 6 precursor	275	Ig-like C2-type 3.|Extracellular (Potential).					integral to membrane				ovary(2)|skin(1)	3	all_hematologic(112;0.0597)					GGAACTACTCCTGCGAGGCTG	0.537													9	53					0	0	1	0	0
SLAMF9	89886	broad.mit.edu	37	1	159923341	159923341	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:159923341A>G	uc001fus.2	-	2	266	c.149T>C	c.(148-150)GTT>GCT	p.V50A	SLAMF9_uc009wtd.2_Missense_Mutation_p.V50A|SLAMF9_uc001fut.2_Missense_Mutation_p.V50A	NM_033438	NP_254273	Q96A28	SLAF9_HUMAN	SLAM family member 9 isoform 1	50	Extracellular (Potential).					integral to membrane				ovary(1)	1	all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			GATGTTCTCAACCTCTTCATC	0.532													18	57					0	0	1	0	0
ATP1A4	480	broad.mit.edu	37	1	160129280	160129280	+	Silent	SNP	C	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:160129280C>A	uc001fve.3	+	6	1221	c.742C>A	c.(742-744)CGA>AGA	p.R248R	ATP1A4_uc001fvf.3_RNA	NM_144699	NP_653300	Q13733	AT1A4_HUMAN	Na+/K+ -ATPase alpha 4 subunit isoform 1	248	Cytoplasmic (Potential).				ATP biosynthetic process|ATP hydrolysis coupled proton transport|regulation of cellular pH|sperm motility	sodium:potassium-exchanging ATPase complex	ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			ovary(2)|skin(2)	4	all_cancers(52;2.56e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			TCTGGAGACCCGAAACATCTG	0.488													4	80					1	1	1	1	0
ITLN2	142683	broad.mit.edu	37	1	160921002	160921002	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:160921002C>T	uc001fxd.2	-	4	330	c.272G>A	c.(271-273)TGG>TAG	p.W91*	ITLN2_uc009wts.2_Nonsense_Mutation_p.W90*|ITLN2_uc010pju.1_Nonsense_Mutation_p.W8*	NM_080878	NP_543154	Q8WWU7	ITLN2_HUMAN	intelectin 2 precursor	91	Fibrinogen C-terminal.				signal transduction	extracellular region	receptor binding|sugar binding			ovary(1)	1	all_cancers(52;2.99e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00275)			CACCAGGGTCCAGCCGCCACC	0.572													18	23					0	0	1	0	0
PCP4L1	654790	broad.mit.edu	37	1	161254237	161254237	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:161254237G>A	uc001gad.2	+	3	421	c.173G>A	c.(172-174)CGA>CAA	p.R58Q		NM_001102566	NP_001096036	A6NKN8	PC4L1_HUMAN	Purkinje cell protein 4 like 1	58	IQ.										0	all_cancers(52;4.16e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00376)			AAGTTCCGGCGATTTCAGAAA	0.532													10	16					0	0	1	0	0
OLFML2B	25903	broad.mit.edu	37	1	161953993	161953993	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:161953993G>A	uc001gbu.2	-	8	2149	c.1725C>T	c.(1723-1725)TTC>TTT	p.F575F	OLFML2B_uc001gbt.2_Silent_p.F58F|OLFML2B_uc010pkq.1_Silent_p.F576F	NM_015441	NP_056256	Q68BL8	OLM2B_HUMAN	olfactomedin-like 2B precursor	575	Olfactomedin-like.									skin(1)	1	all_hematologic(112;0.156)		BRCA - Breast invasive adenocarcinoma(70;0.0172)			GATTGTAGTAGAAGGCGCCAT	0.587													7	49					0	0	1	0	0
LRRC52	440699	broad.mit.edu	37	1	165513898	165513898	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:165513898C>T	uc001gde.2	+	1	421	c.365C>T	c.(364-366)TCG>TTG	p.S122L	LOC400794_uc001gdc.2_Intron|LOC400794_uc001gdd.2_Intron|LOC400794_uc009wvd.2_Intron	NM_001005214	NP_001005214	Q8N7C0	LRC52_HUMAN	leucine rich repeat containing 52 precursor	122	LRR 3.|Extracellular (Potential).					integral to membrane				ovary(1)	1	all_hematologic(923;0.0773)|Acute lymphoblastic leukemia(8;0.155)					TTCACTTTCTCGGTGCTCAGC	0.493													85	90					0	0	1	0	0
ILDR2	387597	broad.mit.edu	37	1	166904678	166904678	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:166904678G>A	uc001gdx.1	-	6	796	c.740C>T	c.(739-741)CCT>CTT	p.P247L		NM_199351	NP_955383	Q71H61	ILDR2_HUMAN	immunoglobulin-like domain containing receptor	247	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1						GACAGAGGGAGGGTACCCGGC	0.592													18	28					0	0	1	0	0
POU2F1	5451	broad.mit.edu	37	1	167341173	167341173	+	Missense_Mutation	SNP	C	T	T	rs141034916	byFrequency	TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:167341173C>T	uc001gec.2	+	6	395	c.233C>T	c.(232-234)TCG>TTG	p.S78L	POU2F1_uc010plg.1_RNA|POU2F1_uc001ged.2_Missense_Mutation_p.S76L|POU2F1_uc001gee.2_Missense_Mutation_p.S78L|POU2F1_uc010plh.1_Missense_Mutation_p.S78L|POU2F1_uc001gef.2_Missense_Mutation_p.S90L|POU2F1_uc001geg.2_5'UTR	NM_002697	NP_002688	P14859	PO2F1_HUMAN	POU class 2 homeobox 1	78					negative regulation of transcription, DNA-dependent|transcription from RNA polymerase III promoter	nucleoplasm	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(2)|skin(2)|breast(1)	5						AATGAAGAATCGGGGGATTCG	0.473													99	117					0	0	1	0	0
RCSD1	92241	broad.mit.edu	37	1	167666794	167666794	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:167666794G>A	uc001gem.2	+	6	1120	c.933G>A	c.(931-933)ATG>ATA	p.M311I	RCSD1_uc010pli.1_Missense_Mutation_p.M281I	NM_052862	NP_443094	Q6JBY9	CPZIP_HUMAN	RCSD domain containing 1	311	RCSD.									ovary(2)|central_nervous_system(2)|skin(1)	5	all_hematologic(923;0.215)					AAGCAGAGATGGAAAAGGCTA	0.567													3	14					0	0	1	0	0
F5	2153	broad.mit.edu	37	1	169510193	169510193	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:169510193G>A	uc001ggg.1	-	13	4280	c.4135C>T	c.(4135-4137)CTC>TTC	p.L1379F		NM_000130	NP_000121	P12259	FA5_HUMAN	coagulation factor V precursor	1379	B.|2-22.|35 X 9 AA approximate tandem repeats of [TNP]-L-S-P-D-L-S-Q-T.				cell adhesion|platelet activation|platelet degranulation	plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	all_hematologic(923;0.208)				Drotrecogin alfa(DB00055)	GTCTGACTGAGTTCTGGAGAG	0.527													38	146					0	0	1	0	0
SELP	6403	broad.mit.edu	37	1	169586505	169586505	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:169586505T>C	uc001ggi.3	-	3	307	c.242A>G	c.(241-243)AAG>AGG	p.K81R	SELP_uc001ggh.2_5'UTR|SELP_uc009wvr.2_Missense_Mutation_p.K81R	NM_003005	NP_002996	P16109	LYAM3_HUMAN	selectin P precursor	81	Extracellular (Potential).|C-type lectin.				platelet activation|platelet degranulation|positive regulation of platelet activation	external side of plasma membrane|extracellular space|integral to plasma membrane|membrane fraction|platelet alpha granule membrane|platelet dense granule membrane|soluble fraction	fucose binding|glycosphingolipid binding|heparin binding|lipopolysaccharide binding|oligosaccharide binding|sialic acid binding			ovary(2)|skin(2)	4	all_hematologic(923;0.208)				Clopidogrel(DB00758)|Heparin(DB01109)|Tirofiban(DB00775)	GGGTAGGACCTTATTGAGGTA	0.428													32	99					0	0	1	0	0
SELE	6401	broad.mit.edu	37	1	169701994	169701994	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:169701994G>A	uc001ggm.3	-	3	340	c.183C>T	c.(181-183)TCC>TCT	p.S61S	C1orf112_uc001ggj.2_Intron	NM_000450	NP_000441	P16581	LYAM2_HUMAN	selectin E precursor	61	Extracellular (Potential).|C-type lectin.				actin filament-based process|activation of phospholipase C activity|calcium-mediated signaling|heterophilic cell-cell adhesion|leukocyte migration involved in inflammatory response|leukocyte tethering or rolling|positive regulation of receptor internalization|regulation of inflammatory response|response to interleukin-1|response to lipopolysaccharide|response to tumor necrosis factor	caveola|coated pit|cortical cytoskeleton|extracellular space|integral to membrane|perinuclear region of cytoplasm	oligosaccharide binding|phospholipase binding|sialic acid binding|transmembrane receptor activity			ovary(3)|skin(2)	5	all_hematologic(923;0.208)					AGCTCAATATGGAGTTTAGGT	0.423													35	41					0	0	1	0	0
FMO1	2326	broad.mit.edu	37	1	171252334	171252334	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:171252334G>A	uc009wvz.2	+	8	1371	c.1235G>A	c.(1234-1236)AGG>AAG	p.R412K	FMO1_uc010pme.1_Missense_Mutation_p.R349K|FMO1_uc001ghl.2_Missense_Mutation_p.R412K|FMO1_uc001ghm.2_Missense_Mutation_p.R412K|FMO1_uc001ghn.2_Intron	NM_002021	NP_002012	Q01740	FMO1_HUMAN	flavin containing monooxygenase 1	412					NADPH oxidation|organic acid metabolic process|toxin metabolic process|xenobiotic metabolic process	endoplasmic reticulum lumen|integral to membrane|intrinsic to endoplasmic reticulum membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity|NADP binding			skin(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					ATTAATGCAAGGAAAGAAAAC	0.279													13	89					0	0	1	0	0
DNM3	26052	broad.mit.edu	37	1	172348180	172348180	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:172348180A>G	uc001gie.2	+	18	2092	c.1916A>G	c.(1915-1917)CAA>CGA	p.Q639R	DNM3_uc001gif.2_Missense_Mutation_p.Q635R|DNM3_uc001gih.1_5'UTR	NM_015569	NP_056384	Q9UQ16	DYN3_HUMAN	dynamin 3 isoform a	645					endocytosis|filopodium assembly|synapse assembly	dendritic spine|microtubule|perinuclear region of cytoplasm|postsynaptic density	GTP binding|GTPase activity|protein binding			breast(1)	1						GAGAATGGACAAGCAGAAAAC	0.383													11	19					0	0	1	0	0
DNM3	26052	broad.mit.edu	37	1	172348182	172348182	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:172348182G>A	uc001gie.2	+	18	2094	c.1918G>A	c.(1918-1920)GCA>ACA	p.A640T	DNM3_uc001gif.2_Missense_Mutation_p.A636T|DNM3_uc001gih.1_5'UTR	NM_015569	NP_056384	Q9UQ16	DYN3_HUMAN	dynamin 3 isoform a	646					endocytosis|filopodium assembly|synapse assembly	dendritic spine|microtubule|perinuclear region of cytoplasm|postsynaptic density	GTP binding|GTPase activity|protein binding			breast(1)	1						GAATGGACAAGCAGAAAACTT	0.388													11	20					0	0	1	0	0
TNR	7143	broad.mit.edu	37	1	175365860	175365860	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:175365860C>T	uc001gkp.1	-	3	1141	c.1060G>A	c.(1060-1062)GAA>AAA	p.E354K	TNR_uc009wwu.1_Missense_Mutation_p.E354K|TNR_uc010pmz.1_Intron	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	354	Fibronectin type-III 1.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					ATCACATATTCCGTCACTGCC	0.622													43	59					0	0	1	0	0
TNR	7143	broad.mit.edu	37	1	175372652	175372652	+	Silent	SNP	C	T	T	rs142283399	byFrequency	TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:175372652C>T	uc001gkp.1	-	2	681	c.600G>A	c.(598-600)TCG>TCA	p.S200S	TNR_uc009wwu.1_Silent_p.S200S|TNR_uc010pmz.1_Silent_p.S200S	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	200	Cys-rich.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					AGTAGGGCTCCGAGCAATTCT	0.582													34	102					0	0	1	0	0
TNR	7143	broad.mit.edu	37	1	175375427	175375427	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:175375427C>T	uc001gkp.1	-	1	505	c.424G>A	c.(424-426)GAG>AAG	p.E142K	TNR_uc009wwu.1_Missense_Mutation_p.E142K|TNR_uc010pmz.1_Missense_Mutation_p.E142K	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	142	Potential.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					TCCAGCATCTCGATCCGGCTC	0.602													36	33					0	0	1	0	0
ASTN1	460	broad.mit.edu	37	1	176833438	176833438	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:176833438C>T	uc001glc.2	-	23	4079	c.3867G>A	c.(3865-3867)GGG>GGA	p.G1289G	ASTN1_uc001glb.1_Intron	NM_004319	NP_004310	O14525	ASTN1_HUMAN	astrotactin isoform 1	1297					cell migration|neuron cell-cell adhesion	integral to membrane				ovary(6)|skin(5)|central_nervous_system(2)|large_intestine(1)|lung(1)	15						CTTTGCTGTCCCCATAGTCGT	0.537													24	106					0	0	1	0	0
ASTN1	460	broad.mit.edu	37	1	176993856	176993856	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:176993856C>T	uc001glc.2	-	6	1345	c.1133G>A	c.(1132-1134)CGA>CAA	p.R378Q	ASTN1_uc001glb.1_Missense_Mutation_p.R378Q|ASTN1_uc001gld.1_Missense_Mutation_p.R378Q|ASTN1_uc009wwx.1_Missense_Mutation_p.R378Q|ASTN1_uc001gle.3_RNA	NM_004319	NP_004310	O14525	ASTN1_HUMAN	astrotactin isoform 1	378					cell migration|neuron cell-cell adhesion	integral to membrane				ovary(6)|skin(5)|central_nervous_system(2)|large_intestine(1)|lung(1)	15						CACAGGACTTCGGGGAGAACC	0.493													13	32					0	0	1	0	0
FAM5B	57795	broad.mit.edu	37	1	177249609	177249609	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:177249609C>T	uc001glf.2	+	8	1609	c.1297C>T	c.(1297-1299)CCT>TCT	p.P433S	FAM5B_uc001glg.2_Missense_Mutation_p.P328S	NM_021165	NP_066988	Q9C0B6	FAM5B_HUMAN	family with sequence similarity 5, member B	433						extracellular region				skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6						AAGCACCTTTCCTGGCACTTT	0.562													21	30					0	0	1	0	0
ABL2	27	broad.mit.edu	37	1	179077499	179077499	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:179077499G>A	uc001gmj.3	-	12	3190	c.2903C>T	c.(2902-2904)TCC>TTC	p.S968F	ABL2_uc010pnf.1_Missense_Mutation_p.S865F|ABL2_uc010png.1_Missense_Mutation_p.S844F|ABL2_uc010pnh.1_Missense_Mutation_p.S947F|ABL2_uc001gmg.3_Missense_Mutation_p.S850F|ABL2_uc001gmi.3_Missense_Mutation_p.S953F|ABL2_uc001gmh.3_Missense_Mutation_p.S932F|ABL2_uc010pne.1_Missense_Mutation_p.S829F	NM_007314	NP_009298	P42684	ABL2_HUMAN	arg tyrosine kinase isoform b	968	Pro-rich.				axon guidance|cell adhesion|peptidyl-tyrosine phosphorylation|positive regulation of oxidoreductase activity|signal transduction	cytoskeleton|cytosol	ATP binding|magnesium ion binding|manganese ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(8)|breast(3)|ovary(2)|central_nervous_system(1)	14					Adenosine triphosphate(DB00171)|Dasatinib(DB01254)	GTCTCCAGAGGATGTGACCTG	0.537			T	ETV6	AML								25	78					0	0	1	0	0
TDRD5	163589	broad.mit.edu	37	1	179632519	179632519	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:179632519G>A	uc001gnf.1	+	15	2630	c.2380G>A	c.(2380-2382)GAT>AAT	p.D794N	TDRD5_uc010pnp.1_Missense_Mutation_p.D848N|TDRD5_uc001gnh.1_Missense_Mutation_p.D349N	NM_173533	NP_775804	Q8NAT2	TDRD5_HUMAN	tudor domain containing 5	794					DNA methylation involved in gamete generation|P granule organization|spermatid development	chromatoid body|pi-body	nucleic acid binding			ovary(2)|skin(2)|central_nervous_system(1)	5						TACATGGGATGATTCTTGGCA	0.408													11	25					0	0	1	0	0
CACNA1E	777	broad.mit.edu	37	1	181705550	181705550	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:181705550C>T	uc001gow.2	+	22	3567	c.3402C>T	c.(3400-3402)TTC>TTT	p.F1134F	CACNA1E_uc009wxs.2_Silent_p.F1022F|CACNA1E_uc001gox.1_Silent_p.F360F|CACNA1E_uc009wxt.2_Silent_p.F360F	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	1134	Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						GCTCAATGTTCATCTTCAGCA	0.453													9	8					0	0	1	0	0
HMCN1	83872	broad.mit.edu	37	1	185878601	185878601	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:185878601A>G	uc001grq.1	+	5	983	c.754A>G	c.(754-756)AGT>GGT	p.S252G		NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	252					response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						TGTGTCTTTGAGTGGGCCTTC	0.368													12	24					0	0	1	0	0
PDC	5132	broad.mit.edu	37	1	186413436	186413436	+	Missense_Mutation	SNP	T	G	G			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:186413436T>G	uc001gsa.2	-	4	489	c.416A>C	c.(415-417)CAC>CCC	p.H139P	PDC_uc001grz.2_Missense_Mutation_p.H87P	NM_002597	NP_002588	P20941	PHOS_HUMAN	phosducin isoform a	139					G-protein coupled receptor protein signaling pathway|phototransduction|visual perception	actin cytoskeleton|cytosol|nucleus|photoreceptor inner segment|photoreceptor outer segment	phospholipase inhibitor activity			skin(1)	1		Breast(1374;1.53e-05)		KIRC - Kidney renal clear cell carcinoma(1967;3.23e-08)|Colorectal(1306;0.0129)		TTCATAAATGTGAACAACAAT	0.358													39	41					0	0	1	0	0
FAM5C	339479	broad.mit.edu	37	1	190234018	190234018	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:190234018G>A	uc001gse.1	-	4	827	c.595C>T	c.(595-597)CAA>TAA	p.Q199*	FAM5C_uc010pot.1_Nonsense_Mutation_p.Q97*	NM_199051	NP_950252	Q76B58	FAM5C_HUMAN	family with sequence similarity 5, member C	199						extracellular region				lung(2)|ovary(1)|kidney(1)|skin(1)	5	Prostate(682;0.198)					GATGCAATTTGAATGTGGTGA	0.418													12	30					0	0	1	0	0
FAM5C	339479	broad.mit.edu	37	1	190424010	190424010	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:190424010C>T	uc001gse.1	-	2	243	c.11G>A	c.(10-12)CGA>CAA	p.R4Q	FAM5C_uc010pot.1_5'UTR	NM_199051	NP_950252	Q76B58	FAM5C_HUMAN	family with sequence similarity 5, member C	4						extracellular region				lung(2)|ovary(1)|kidney(1)|skin(1)	5	Prostate(682;0.198)					AGCTCTGCTTCGCCATATCAT	0.463													4	20					0	0	1	0	0
KCNT2	343450	broad.mit.edu	37	1	196436863	196436863	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:196436863C>T	uc001gtd.1	-	7	573	c.513G>A	c.(511-513)TGG>TGA	p.W171*	KCNT2_uc009wyt.1_RNA|KCNT2_uc001gte.1_Nonsense_Mutation_p.W171*|KCNT2_uc001gtf.1_Nonsense_Mutation_p.W171*|KCNT2_uc001gtg.1_RNA|KCNT2_uc009wyu.2_Nonsense_Mutation_p.W171*|KCNT2_uc009wyv.1_Nonsense_Mutation_p.W146*	NM_198503	NP_940905	Q6UVM3	KCNT2_HUMAN	potassium channel, subfamily T, member 2	171	Helical; Name=Segment S4; (Potential).					voltage-gated potassium channel complex	ATP binding|calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(5)|breast(1)|skin(1)	7						GTTTGGCAAGCCAACAGTTCA	0.274													12	23					0	0	1	0	0
CFH	3075	broad.mit.edu	37	1	196645183	196645183	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:196645183C>T	uc001gtj.3	+	4	655	c.415C>T	c.(415-417)CCT>TCT	p.P139S	CFH_uc001gti.3_Missense_Mutation_p.P139S|CFH_uc009wyw.2_Missense_Mutation_p.P139S|CFH_uc009wyx.2_Missense_Mutation_p.P139S	NM_000186	NP_000177	P08603	CFAH_HUMAN	complement factor H isoform a precursor	139	Sushi 2.				complement activation, alternative pathway	extracellular space				skin(4)|ovary(1)|breast(1)	6						CAATGATATTCCTATATGTGA	0.279													22	39					0	0	1	0	0
CFHR4	10877	broad.mit.edu	37	1	196883786	196883786	+	Missense_Mutation	SNP	T	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:196883786T>A	uc001gto.2	+	4	670	c.601T>A	c.(601-603)TTC>ATC	p.F201I	CFHR4_uc009wyy.2_Missense_Mutation_p.F447I|CFHR4_uc001gtp.2_Missense_Mutation_p.F448I	NM_006684	NP_006675	Q92496	FHR4_HUMAN	complement factor H-related 4 precursor	201	Sushi 3.					extracellular region	lipid transporter activity			ovary(1)|pancreas(1)|skin(1)	3						GTGGTCCCATTTCCCAACATG	0.299													11	24					0	0	1	0	0
CFHR4	10877	broad.mit.edu	37	1	196887394	196887394	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:196887394G>A	uc001gto.2	+	6	923	c.854G>A	c.(853-855)GGA>GAA	p.G285E	CFHR4_uc009wyy.2_Missense_Mutation_p.G531E|CFHR4_uc001gtp.2_Missense_Mutation_p.G532E	NM_006684	NP_006675	Q92496	FHR4_HUMAN	complement factor H-related 4 precursor	285	Sushi 5.					extracellular region	lipid transporter activity			ovary(1)|pancreas(1)|skin(1)	3						CAGTTAAAAGGAAAAAGTGAC	0.279													12	19					0	0	1	0	0
CFHR2	3080	broad.mit.edu	37	1	196927075	196927075	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:196927075C>T	uc001gtq.1	+	4	562	c.485C>T	c.(484-486)TCA>TTA	p.S162L	CFHR2_uc001gtr.1_Missense_Mutation_p.S38L	NM_005666	NP_005657	P36980	FHR2_HUMAN	H factor (complement)-like 3 precursor	162	Sushi 3.					extracellular region				skin(2)|ovary(1)	3						GACATTACTTCATTCCTGTTG	0.378													14	61					0	0	1	0	0
CFHR5	81494	broad.mit.edu	37	1	196953216	196953216	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:196953216A>T	uc001gts.3	+	3	507	c.379A>T	c.(379-381)ATT>TTT	p.I127F		NM_030787	NP_110414	Q9BXR6	FHR5_HUMAN	complement factor H-related 5 precursor	127	Sushi 2.				complement activation, alternative pathway	extracellular region				breast(1)|skin(1)	2						TGAGAAAAACATTTCGTGTGT	0.373													24	21					0	0	1	0	0
ASPM	259266	broad.mit.edu	37	1	197093454	197093454	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:197093454A>T	uc001gtu.2	-	13	3433	c.3176T>A	c.(3175-3177)ATT>AAT	p.I1059N	ASPM_uc001gtv.2_Missense_Mutation_p.I1059N|ASPM_uc001gtw.3_Intron	NM_018136	NP_060606	Q8IZT6	ASPM_HUMAN	asp (abnormal spindle)-like, microcephaly	1059	Potential.				mitosis	cytoplasm|nucleus	calmodulin binding			ovary(4)|central_nervous_system(2)	6						GTTAAGGGAAATATCCACCTA	0.284													12	12					0	0	1	0	0
CRB1	23418	broad.mit.edu	37	1	197390790	197390790	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:197390790C>T	uc001gtz.2	+	6	1967	c.1832C>T	c.(1831-1833)TCC>TTC	p.S611F	CRB1_uc010poz.1_Missense_Mutation_p.S542F|CRB1_uc010ppa.1_Intron|CRB1_uc009wza.2_Missense_Mutation_p.S499F|CRB1_uc010ppb.1_Missense_Mutation_p.S611F|CRB1_uc010ppc.1_Intron|CRB1_uc010ppd.1_Missense_Mutation_p.S92F|CRB1_uc001gub.1_Missense_Mutation_p.S260F	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	611	Extracellular (Potential).|Laminin G-like 1.				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						TTTCAGAACTCCTTTTTGGGT	0.443													49	45					0	0	1	0	0
NR5A2	2494	broad.mit.edu	37	1	200012959	200012959	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:200012959C>T	uc001gvb.2	+	3	466	c.260C>T	c.(259-261)CCC>CTC	p.P87L	NR5A2_uc001gvc.2_Missense_Mutation_p.P41L|NR5A2_uc009wzh.2_Missense_Mutation_p.P47L|NR5A2_uc010pph.1_Missense_Mutation_p.P15L	NM_205860	NP_995582	O00482	NR5A2_HUMAN	nuclear receptor subfamily 5, group A, member 2	87	Nuclear receptor.|NR C4-type.				embryo development|positive regulation of viral genome replication|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	cytoplasm|nucleoplasm	lipid binding|protein binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|steroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2	Prostate(682;0.19)					GAGCTTTGTCCCGTGTGTGGA	0.373													7	30					0	0	1	0	0
KIF21B	23046	broad.mit.edu	37	1	200956195	200956195	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:200956195G>A	uc001gvs.1	-	25	3860	c.3543C>T	c.(3541-3543)TTC>TTT	p.F1181F	KIF21B_uc001gvr.1_Silent_p.F1181F|KIF21B_uc009wzl.1_Silent_p.F1181F|KIF21B_uc010ppn.1_Silent_p.F1181F	NM_017596	NP_060066	O75037	KI21B_HUMAN	kinesin family member 21B	1181					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)|skin(3)	6						CTCGGACAGAGAAGCCCACTC	0.602													56	75					0	0	1	0	0
CACNA1S	779	broad.mit.edu	37	1	201029893	201029893	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:201029893G>A	uc001gvv.2	-	26	3534	c.3307C>T	c.(3307-3309)CCC>TCC	p.P1103S		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	1103	Cytoplasmic (Potential).				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	GGGTTTTTGGGAATGTAGCAC	0.537													42	165					0	0	1	0	0
LGR6	59352	broad.mit.edu	37	1	202163199	202163199	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:202163199C>T	uc001gxu.2	+	1	82	c.82C>T	c.(82-84)CCC>TCC	p.P28S		NM_001017403	NP_001017403	Q9HBX8	LGR6_HUMAN	leucine-rich repeat-containing G protein-coupled	28	LRRNT.|Extracellular (Potential).					integral to membrane|plasma membrane	protein-hormone receptor activity	p.299_300insGRS(1)		large_intestine(4)|ovary(3)|skin(2)|pancreas(1)	10						cgccccccagcccggcccggg	0.522													3	5					0	0	1	0	0
ATP2B4	493	broad.mit.edu	37	1	203696697	203696697	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:203696697C>T	uc001gzw.2	+	20	4191	c.3307C>T	c.(3307-3309)CAG>TAG	p.Q1103*	ATP2B4_uc001gzv.2_Nonsense_Mutation_p.Q1103*|ATP2B4_uc009xaq.2_Nonsense_Mutation_p.Q1103*|ATP2B4_uc001gzx.2_Nonsense_Mutation_p.Q134*|ATP2B4_uc009xar.2_Nonsense_Mutation_p.Q98*|ATP2B4_uc010pqj.1_RNA|uc010pqk.1_5'Flank|SNORA77_uc001gzy.1_5'Flank	NM_001684	NP_001675	P23634	AT2B4_HUMAN	plasma membrane calcium ATPase 4 isoform 4b	1103	Cytoplasmic (Potential).|Calmodulin-binding subdomain A.				ATP biosynthetic process|platelet activation	integral to plasma membrane	ATP binding|calcium-transporting ATPase activity|calmodulin binding|metal ion binding|protein binding			ovary(2)|skin(1)	3	all_cancers(21;0.071)|all_epithelial(62;0.228)		BRCA - Breast invasive adenocarcinoma(75;0.109)			TATCCAGACTCAGGTACTCTG	0.572													25	53					0	0	1	0	0
LAX1	54900	broad.mit.edu	37	1	203734720	203734720	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:203734720G>A	uc001haa.2	+	1	437	c.27G>A	c.(25-27)TCG>TCA	p.S9S	LAX1_uc010pql.1_Intron	NM_017773	NP_060243	Q8IWV1	LAX1_HUMAN	lymphocyte transmembrane adaptor 1 isoform a	9	Extracellular (Potential).				B cell activation|immune response|inactivation of MAPK activity|intracellular signal transduction|negative regulation of T cell activation	Golgi apparatus|integral to membrane|plasma membrane	protein kinase binding|SH2 domain binding			central_nervous_system(2)	2	all_cancers(21;0.0915)		BRCA - Breast invasive adenocarcinoma(75;0.109)			CAACCCTTTCGACAATCAGAG	0.522													19	23					0	0	1	0	0
LRRN2	10446	broad.mit.edu	37	1	204588393	204588393	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:204588393G>A	uc001hbe.1	-	3	1116	c.728C>T	c.(727-729)TCC>TTC	p.S243F	MDM4_uc001hbd.1_Intron|LRRN2_uc001hbf.1_Missense_Mutation_p.S243F|LRRN2_uc009xbf.1_Missense_Mutation_p.S243F|MDM4_uc001hbc.2_Intron	NM_006338	NP_006329	O75325	LRRN2_HUMAN	leucine rich repeat neuronal 2 precursor	243	Extracellular (Potential).|LRR 8.				cell adhesion	integral to membrane	receptor activity			central_nervous_system(2)	2	all_cancers(21;0.0519)|Breast(84;0.112)|Prostate(682;0.19)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.143)			GTCATAGAAGGAGAGGCTCTC	0.642													15	30					0	0	1	0	0
KLHDC8A	55220	broad.mit.edu	37	1	205306717	205306717	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:205306717T>C	uc001hcf.1	-	6	1431	c.863A>G	c.(862-864)AAT>AGT	p.N288S	KLHDC8A_uc010prg.1_Missense_Mutation_p.N175S|KLHDC8A_uc001hcg.1_Missense_Mutation_p.N288S	NM_018203	NP_060673	Q8IYD2	KLD8A_HUMAN	kelch domain containing 8A	288	Kelch 7.									ovary(1)	1	Breast(84;0.23)		BRCA - Breast invasive adenocarcinoma(75;0.117)			AGTGGGTTGATTCCCTGAAAG	0.592													24	68					0	0	1	0	0
SLC41A1	254428	broad.mit.edu	37	1	205764127	205764127	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:205764127G>A	uc001hdh.1	-	10	2099	c.1227C>T	c.(1225-1227)GCC>GCT	p.A409A	SLC41A1_uc001hdg.1_Silent_p.A30A	NM_173854	NP_776253	Q8IVJ1	S41A1_HUMAN	solute carrier family 41 member 1	409						integral to membrane|plasma membrane	magnesium ion transmembrane transporter activity			skin(2)	2	Breast(84;0.0799)		BRCA - Breast invasive adenocarcinoma(75;0.0252)			AGAGGACCCGGGCTGAGCGAG	0.567													23	31					0	0	1	0	0
CR1	1378	broad.mit.edu	37	1	207758206	207758206	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:207758206C>T	uc001hfy.2	+	25	4305	c.4165C>T	c.(4165-4167)CTT>TTT	p.L1389F	CR1_uc009xcl.1_Missense_Mutation_p.L939F|CR1_uc001hfx.2_Missense_Mutation_p.L1839F	NM_000573	NP_000564	P17927	CR1_HUMAN	complement receptor 1 isoform F precursor	1389	Extracellular (Potential).|Sushi 21.				complement activation, classical pathway|innate immune response	integral to plasma membrane	complement receptor activity			ovary(3)	3						TCGCTGTGAACTTTCTGTTCG	0.498													18	85					0	0	1	0	0
MIR205	406988	broad.mit.edu	37	1	209605553	209605553	+	RNA	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:209605553C>T	hsa-mir-205|MI0000285	+			c.76C>T			LOC642587_uc009xcn.2_Silent_p.F56F|LOC642587_uc010psk.1_RNA																	0						AACCAGATTTCAGTGGAGTGA	0.353													15	32					0	0	1	0	0
HSD11B1	3290	broad.mit.edu	37	1	209879239	209879239	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:209879239G>A	uc001hhj.2	+	3	279	c.172G>A	c.(172-174)GGA>AGA	p.G58R	HSD11B1_uc001hhk.2_Missense_Mutation_p.G58R	NM_181755	NP_861420	P28845	DHI1_HUMAN	11-beta-hydroxysteroid dehydrogenase 1	58	Lumenal (Potential).|NADP.				glucocorticoid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	11-beta-hydroxysteroid dehydrogenase (NADP+) activity|11-beta-hydroxysteroid dehydrogenase|binding			breast(1)	1				OV - Ovarian serous cystadenocarcinoma(81;1.04e-55)|Epithelial(68;1.57e-52)|all cancers(67;1.83e-46)|Colorectal(1306;0.115)	NADH(DB00157)	GGCGAAGATGGGAGCCCATGT	0.507													28	41					0	0	1	0	0
IRF6	3664	broad.mit.edu	37	1	209963962	209963962	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:209963962G>A	uc001hhq.1	-	7	1201	c.938C>T	c.(937-939)GCC>GTC	p.A313V	IRF6_uc010psm.1_Missense_Mutation_p.A218V|IRF6_uc009xct.1_Missense_Mutation_p.A313V	NM_006147	NP_006138	O14896	IRF6_HUMAN	interferon regulatory factor 6	313					cell cycle arrest|interferon-gamma-mediated signaling pathway|mammary gland epithelial cell differentiation|negative regulation of cell proliferation|positive regulation of transcription, DNA-dependent|type I interferon-mediated signaling pathway	cytoplasm|nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(81;0.0351)		CAGCCTGATGGCATAAATGGC	0.507										HNSCC(57;0.16)			22	31					0	0	1	0	0
ANGEL2	90806	broad.mit.edu	37	1	213186679	213186679	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:213186679C>T	uc001hjz.2	-	2	296	c.141G>A	c.(139-141)TGG>TGA	p.W47*	ANGEL2_uc010pto.1_Intron|ANGEL2_uc010ptp.1_Intron|ANGEL2_uc001hka.2_Intron|ANGEL2_uc010ptq.1_Intron|ANGEL2_uc001hkb.2_Nonsense_Mutation_p.W25*	NM_144567	NP_653168	Q5VTE6	ANGE2_HUMAN	LOC90806 protein	47											0				OV - Ovarian serous cystadenocarcinoma(81;0.00446)|all cancers(67;0.0169)|Epithelial(68;0.0921)|GBM - Glioblastoma multiforme(131;0.185)		TATGTCTGTTCCAGCAACACC	0.453													43	59					0	0	1	0	0
RAB3GAP2	25782	broad.mit.edu	37	1	220363796	220363796	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:220363796C>T	uc010puk.1	-	15	1718	c.1554G>A	c.(1552-1554)CAG>CAA	p.Q518Q	RAB3GAP2_uc001hmf.2_RNA|RAB3GAP2_uc001hmg.2_Silent_p.Q98Q	NM_012414	NP_036546	Q9H2M9	RBGPR_HUMAN	rab3 GTPase-activating protein, non-catalytic	518					intracellular protein transport	cytoplasm|soluble fraction	GTPase activator activity|protein heterodimerization activity			central_nervous_system(1)	1				GBM - Glioblastoma multiforme(131;0.0443)		TCTGATAAGTCTGTGGCTGCC	0.408													30	58					0	0	1	0	0
MOSC2	54996	broad.mit.edu	37	1	220953377	220953377	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:220953377C>T	uc001hmq.2	+	5	966	c.768C>T	c.(766-768)CTC>CTT	p.L256L	MOSC2_uc001hmr.2_Silent_p.L256L|MOSC2_uc009xdx.2_Intron	NM_017898	NP_060368	Q969Z3	MOSC2_HUMAN	MOCO sulphurase C-terminal domain containing 2	256	MOSC.					mitochondrial outer membrane|peroxisome	molybdenum ion binding|oxidoreductase activity|pyridoxal phosphate binding				0				GBM - Glioblastoma multiforme(131;0.00499)|all cancers(67;0.204)		GGGATGAACTCCTAATTGGTA	0.418													27	32					0	0	1	0	0
DUSP10	11221	broad.mit.edu	37	1	221875829	221875829	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:221875829G>A	uc001hmy.1	-	4	1556	c.1374C>T	c.(1372-1374)TTC>TTT	p.F458F	DUSP10_uc001hmx.1_Silent_p.F116F|DUSP10_uc001hmz.1_Silent_p.F116F	NM_007207	NP_009138	Q9Y6W6	DUS10_HUMAN	dual specificity phosphatase 10 isoform a	458					inactivation of MAPK activity|JNK cascade|negative regulation of JNK cascade|negative regulation of JUN kinase activity|negative regulation of stress-activated MAPK cascade	Golgi apparatus|nucleus	MAP kinase tyrosine/serine/threonine phosphatase activity|protein tyrosine phosphatase activity			upper_aerodigestive_tract(1)|lung(1)	2				GBM - Glioblastoma multiforme(131;0.0103)		GGTCTTCCTCGAACTCTAGCA	0.473													34	111					0	0	1	0	0
AIDA	64853	broad.mit.edu	37	1	222860965	222860965	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:222860965G>A	uc001hnn.2	-	5	530	c.325C>T	c.(325-327)CCA>TCA	p.P109S	AIDA_uc001hno.2_RNA|AIDA_uc010pus.1_Missense_Mutation_p.P85S	NM_022831	NP_073742	Q96BJ3	AIDA_HUMAN	axin interactor, dorsalization associated	109					dorsal/ventral pattern formation|negative regulation of JNK cascade|negative regulation of JUN kinase activity|regulation of protein homodimerization activity						0						ACATCAAATGGGAATTCTTTA	0.254													23	113					0	0	1	0	0
DISP1	84976	broad.mit.edu	37	1	223176405	223176405	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:223176405C>T	uc001hnu.1	+	8	1813	c.1666C>T	c.(1666-1668)CCT>TCT	p.P556S		NM_032890	NP_116279	Q96F81	DISP1_HUMAN	dispatched A	556	Helical; (Potential).|SSD.				diaphragm development|protein homotrimerization|regulation of protein secretion|smoothened signaling pathway	basolateral plasma membrane|integral to membrane	hedgehog receptor activity|peptide transporter activity				0				GBM - Glioblastoma multiforme(131;0.102)		CGAATTTTTTCCTTTTATGAA	0.353													124	443					0	0	1	0	0
DISP1	84976	broad.mit.edu	37	1	223178038	223178038	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:223178038C>T	uc001hnu.1	+	8	3446	c.3299C>T	c.(3298-3300)TCC>TTC	p.S1100F		NM_032890	NP_116279	Q96F81	DISP1_HUMAN	dispatched A	1100					diaphragm development|protein homotrimerization|regulation of protein secretion|smoothened signaling pathway	basolateral plasma membrane|integral to membrane	hedgehog receptor activity|peptide transporter activity				0				GBM - Glioblastoma multiforme(131;0.102)		ATGATGCCCTCCACAGTTCTA	0.567													244	284					0	0	1	0	0
ENAH	55740	broad.mit.edu	37	1	225742694	225742694	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:225742694C>T	uc001hpc.1	-	3	716	c.263G>A	c.(262-264)GGT>GAT	p.G88D	ENAH_uc001hpd.1_Missense_Mutation_p.G88D	NM_001008493	NP_001008493	Q8N8S7	ENAH_HUMAN	enabled homolog isoform a	88	WH1.				axon guidance|intracellular transport|T cell receptor signaling pathway	cytosol|filopodium|focal adhesion|lamellipodium|synapse	actin binding|SH3 domain binding|WW domain binding			ovary(1)|skin(1)	2	Breast(184;0.206)			GBM - Glioblastoma multiforme(131;0.19)		AAAGTTGAGACCATACACCTG	0.453													17	19					0	0	1	0	0
PRSS38	339501	broad.mit.edu	37	1	228003886	228003886	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:228003886C>T	uc001hrh.2	+	2	244	c.244C>T	c.(244-246)CTC>TTC	p.L82F		NM_183062	NP_898885	A1L453	PRS38_HUMAN	marapsin 2 precursor	82	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			ovary(1)|pancreas(1)	2						CTACGCAGGCCTCCACGTCTG	0.662													23	91					0	0	1	0	0
RHOU	58480	broad.mit.edu	37	1	228879199	228879199	+	Silent	SNP	G	A	A	rs61732781	byFrequency	TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:228879199G>A	uc001htf.2	+	3	1110	c.489G>A	c.(487-489)TCG>TCA	p.S163S		NM_021205	NP_067028	Q7L0Q8	RHOU_HUMAN	ras homolog gene family, member U	163	GTP.				regulation of small GTPase mediated signal transduction	cell projection|cytosol|focal adhesion|Golgi membrane|podosome	GTP binding|metal ion binding|protein binding				0	Breast(184;0.162)	Prostate(94;0.183)				GAACGCAGTCGGATCTCAGAG	0.522													31	80					0	0	1	0	0
AGT	183	broad.mit.edu	37	1	230840018	230840018	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:230840018G>A	uc001hty.3	-	4	1698	c.1190C>T	c.(1189-1191)GCC>GTC	p.A397V	AGT_uc009xfe.2_Intron|AGT_uc009xff.2_Missense_Mutation_p.A369V	NM_000029	NP_000020	P01019	ANGT_HUMAN	angiotensinogen preproprotein	397					activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|blood vessel remodeling|cell-cell signaling|cellular lipid metabolic process|G-protein signaling, coupled to cGMP nucleotide second messenger|kidney development|low-density lipoprotein particle remodeling|negative regulation of nerve growth factor receptor signaling pathway|nitric oxide mediated signal transduction|positive regulation of activation of JAK2 kinase activity|positive regulation of apoptosis|positive regulation of branching involved in ureteric bud morphogenesis|positive regulation of cardiac muscle hypertrophy|positive regulation of cholesterol esterification|positive regulation of cytokine production|positive regulation of endothelial cell migration|positive regulation of epidermal growth factor receptor signaling pathway|positive regulation of fibroblast proliferation|positive regulation of inflammatory response|positive regulation of NAD(P)H oxidase activity|positive regulation of NF-kappaB transcription factor activity|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of protein tyrosine kinase activity|positive regulation of reactive oxygen species metabolic process|positive regulation of transcription, DNA-dependent|regulation of proteolysis|regulation of renal output by angiotensin|regulation of renal sodium excretion|regulation of vasoconstriction|renin-angiotensin regulation of aldosterone production|response to muscle activity involved in regulation of muscle adaptation	extracellular space|soluble fraction	acetyltransferase activator activity|growth factor activity|hormone activity|serine-type endopeptidase inhibitor activity|type 1 angiotensin receptor binding|type 2 angiotensin receptor binding				0	Breast(184;0.0735)|Ovarian(103;0.183)	all_cancers(173;4.64e-23)|all_epithelial(177;3.61e-18)|Breast(1374;0.00093)|all_neural(198;0.0604)|Prostate(94;0.167)		GBM - Glioblastoma multiforme(131;4.4e-06)|Colorectal(1306;5.46e-06)|COAD - Colon adenocarcinoma(196;0.000256)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)	Aliskiren(DB01258)|Atorvastatin(DB01076)|Cilazapril(DB01340)|Irbesartan(DB01029)|Lisinopril(DB00722)|Ouabain(DB01092)|Simvastatin(DB00641)	CTCAGCCTGGGCGAGCAGGTC	0.582													15	20					0	0	1	0	0
PCNXL2	80003	broad.mit.edu	37	1	233394658	233394658	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:233394658G>A	uc001hvl.2	-	5	1185	c.950C>T	c.(949-951)ACC>ATC	p.T317I	PCNXL2_uc009xfu.2_RNA|PCNXL2_uc009xfv.1_RNA	NM_014801	NP_055616	A6NKB5	PCX2_HUMAN	pecanex-like 2	317						integral to membrane				central_nervous_system(1)|pancreas(1)	2		all_cancers(173;0.0347)|Prostate(94;0.137)				GGCCACGATGGTGTCACATTG	0.587													24	100					0	0	1	0	0
CHRM3	1131	broad.mit.edu	37	1	240072057	240072057	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:240072057G>A	uc001hyp.2	+	5	2085	c.1306G>A	c.(1306-1308)GAC>AAC	p.D436N		NM_000740	NP_000731	P20309	ACM3_HUMAN	cholinergic receptor, muscarinic 3	436	Cytoplasmic (By similarity).				cell proliferation|energy reserve metabolic process|nervous system development|protein modification process|regulation of insulin secretion	basolateral plasma membrane|cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(1)	5	Ovarian(103;0.127)	all_cancers(173;0.00567)|all_neural(198;0.203)	OV - Ovarian serous cystadenocarcinoma(106;0.00989)		Anisotropine Methylbromide(DB00517)|Atropine(DB00572)|Benzquinamide(DB00767)|Cevimeline(DB00185)|Cryptenamine(DB00785)|Cyclizine(DB01176)|Darifenacin(DB00496)|Diphemanil Methylsulfate(DB00729)|Diphenidol(DB01231)|Homatropine Methylbromide(DB00725)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Olanzapine(DB00334)|Oxybutynin(DB01062)|Oxyphencyclimine(DB00383)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Solifenacin(DB01591)|Thiethylperazine(DB00372)|Tiotropium(DB01409)|Tolterodine(DB01036)|Tridihexethyl(DB00505)	GTCAGCCGTGGACACAGCTAA	0.547													15	14					0	0	1	0	0
FMN2	56776	broad.mit.edu	37	1	240635691	240635691	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:240635691G>C	uc010pyd.1	+	17	5305	c.5080G>C	c.(5080-5082)GTG>CTG	p.V1694L	FMN2_uc010pye.1_Missense_Mutation_p.V1698L|FMN2_uc010pyg.1_Missense_Mutation_p.V290L|FMN2_uc001hyr.2_RNA	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	1694	Potential.|FH2.				actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			AGCCGAAGAGGTGTGTAGACA	0.338													10	54					0	0	1	0	0
RGS7	6000	broad.mit.edu	37	1	241031932	241031932	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:241031932G>A	uc001hyv.2	-	9	894	c.564C>T	c.(562-564)ATC>ATT	p.I188I	RGS7_uc010pyh.1_Silent_p.I162I|RGS7_uc010pyj.1_Silent_p.I104I|RGS7_uc001hyu.2_Silent_p.I188I|RGS7_uc009xgn.1_Silent_p.I135I|RGS7_uc001hyw.2_Silent_p.I188I|RGS7_uc001hyt.2_Silent_p.I20I	NM_002924	NP_002915	P49802	RGS7_HUMAN	regulator of G-protein signaling 7	188					G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|protein binding|signal transducer activity			ovary(4)|skin(2)|kidney(1)	7		all_cancers(173;0.0131)	OV - Ovarian serous cystadenocarcinoma(106;0.027)			GGCTGTCAAGGATCTTCCTTT	0.463													17	56					0	0	1	0	0
PLD5	200150	broad.mit.edu	37	1	242253362	242253362	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:242253362G>A	uc001hzn.1	-	10	1532	c.1405C>T	c.(1405-1407)CTT>TTT	p.L469F	PLD5_uc001hzl.3_Missense_Mutation_p.L407F|PLD5_uc001hzm.3_Missense_Mutation_p.L259F|PLD5_uc001hzo.1_Missense_Mutation_p.L377F			Q8N7P1	PLD5_HUMAN	RecName: Full=Inactive phospholipase D5;          Short=Inactive PLD 5; AltName: Full=Inactive choline phosphatase 5; AltName: Full=Inactive phosphatidylcholine-hydrolyzing phospholipase D5; AltName: Full=PLDc;	469						integral to membrane	catalytic activity			ovary(6)	6	Melanoma(84;0.242)		OV - Ovarian serous cystadenocarcinoma(106;0.0329)			TTGATAACAAGGCCCGTGCCA	0.418													16	54					0	0	1	0	0
CEP170	9859	broad.mit.edu	37	1	243328040	243328040	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:243328040C>T	uc001hzs.2	-	13	3630	c.3222G>A	c.(3220-3222)ACG>ACA	p.T1074T	CEP170_uc001hzt.2_Silent_p.T976T|CEP170_uc001hzu.2_Silent_p.T976T|CEP170_uc001hzv.1_Silent_p.T452T	NM_014812	NP_055627	Q5SW79	CE170_HUMAN	centrosomal protein 170kDa isoform alpha	1074	Targeting to microtubules.					centriole|microtubule|spindle				ovary(1)|haematopoietic_and_lymphoid_tissue(1)	2	all_neural(11;0.101)	all_cancers(173;0.003)	all cancers(7;5.81e-06)|GBM - Glioblastoma multiforme(7;0.000443)|OV - Ovarian serous cystadenocarcinoma(106;0.0101)			TCTTAGATTTCGTTACTTTAC	0.468													7	44					0	0	1	0	0
NLRP3	114548	broad.mit.edu	37	1	247588557	247588557	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:247588557C>T	uc001icr.2	+	5	1950	c.1812C>T	c.(1810-1812)ATC>ATT	p.I604I	NLRP3_uc001ics.2_Silent_p.I604I|NLRP3_uc001icu.2_Silent_p.I604I|NLRP3_uc001icw.2_Silent_p.I604I|NLRP3_uc001icv.2_Silent_p.I604I|NLRP3_uc010pyw.1_Silent_p.I602I|NLRP3_uc001ict.1_Silent_p.I602I	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	604					detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding			lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			CTCAGCAAATCAGGCTGGAGC	0.448													16	26					0	0	1	0	0
OR13G1	441933	broad.mit.edu	37	1	247835861	247835861	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:247835861C>T	uc001idi.1	-	1	483	c.483G>A	c.(481-483)ATG>ATA	p.M161I		NM_001005487	NP_001005487	Q8NGZ3	O13G1_HUMAN	olfactory receptor, family 13, subfamily G,	161	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			AAGTCAACCTCATGATAAGAG	0.463													11	52					0	0	1	0	0
OR6F1	343169	broad.mit.edu	37	1	247876010	247876010	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:247876010G>A	uc001idj.1	-	1	48	c.48C>T	c.(46-48)GGC>GGT	p.G16G		NM_001005286	NP_001005286	Q8NGZ6	OR6F1_HUMAN	olfactory receptor, family 6, subfamily F,	16	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.0168)			AACCAGGAAAGCCCAGTAAGA	0.458													25	92					0	0	1	0	0
OR11L1	391189	broad.mit.edu	37	1	248004380	248004380	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:248004380G>A	uc001idn.1	-	1	819	c.819C>T	c.(817-819)ATC>ATT	p.I273I		NM_001001959	NP_001001959	Q8NGX0	O11L1_HUMAN	olfactory receptor, family 11, subfamily L,	273	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3	all_cancers(71;8.78e-05)|all_epithelial(71;9.15e-06)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.0786)|Lung NSC(105;0.0858)		OV - Ovarian serous cystadenocarcinoma(106;0.0319)			AGACAGAAATGATCTTGTTGA	0.473													16	49					0	0	1	0	0
OR2L13	284521	broad.mit.edu	37	1	248263421	248263421	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:248263421C>T	uc001ids.2	+	3	1081	c.744C>T	c.(742-744)ATC>ATT	p.I248I		NM_175911	NP_787107	Q8N349	OR2LD_HUMAN	olfactory receptor, family 2, subfamily L,	248	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity|protein binding			central_nervous_system(2)|ovary(1)|skin(1)	4	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0132)			CTGTAGTGATCTTTTACTATG	0.468													35	46					0	0	1	0	0
OR2M2	391194	broad.mit.edu	37	1	248343754	248343754	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:248343754G>A	uc010pzf.1	+	1	467	c.467G>A	c.(466-468)GGA>GAA	p.G156E		NM_001004688	NP_001004688	Q96R28	OR2M2_HUMAN	olfactory receptor, family 2, subfamily M,	156	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|skin(1)	4	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			TCTACAGATGGAATCATTGAT	0.433													59	187					0	0	1	0	0
OR2M3	127062	broad.mit.edu	37	1	248366438	248366438	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:248366438C>T	uc010pzg.1	+	1	69	c.69C>T	c.(67-69)ACC>ACT	p.T23T		NM_001004689	NP_001004689	Q8NG83	OR2M3_HUMAN	olfactory receptor, family 2, subfamily M,	23	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			ACAGCCCCACCCACACCTTCC	0.493													99	144					0	0	1	0	0
OR2M3	127062	broad.mit.edu	37	1	248366836	248366836	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:248366836G>A	uc010pzg.1	+	1	467	c.467G>A	c.(466-468)GGA>GAA	p.G156E		NM_001004689	NP_001004689	Q8NG83	OR2M3_HUMAN	olfactory receptor, family 2, subfamily M,	156	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			TCTACGGATGGAATTATTGAT	0.463													62	93					0	0	1	0	0
OR2M3	127062	broad.mit.edu	37	1	248366917	248366917	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:248366917C>T	uc010pzg.1	+	1	548	c.548C>T	c.(547-549)TCC>TTC	p.S183F		NM_001004689	NP_001004689	Q8NG83	OR2M3_HUMAN	olfactory receptor, family 2, subfamily M,	183	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			GACTTCCCCTCCCTACTAATC	0.413													78	119					0	0	1	0	0
OR2T1	26696	broad.mit.edu	37	1	248570385	248570385	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:248570385G>A	uc010pzm.1	+	1	1090	c.1090G>A	c.(1090-1092)GTG>ATG	p.V364M		NM_030904	NP_112166	O43869	OR2T1_HUMAN	olfactory receptor, family 2, subfamily T,	364	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			TCCTCAAAGGGTGTCAGGAGG	0.512													29	119					0	0	1	0	0
OR2T11	127077	broad.mit.edu	37	1	248789580	248789580	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:248789580G>A	uc001ier.1	-	1	850	c.850C>T	c.(850-852)CCT>TCT	p.P284S		NM_001001964	NP_001001964	Q8NH01	O2T11_HUMAN	olfactory receptor, family 2, subfamily T,	284	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			lung(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			TAGATGAGAGGATTAAGCATG	0.483													8	50					0	0	1	0	0
OR2T27	403239	broad.mit.edu	37	1	248814048	248814048	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:248814048G>A	uc010pzo.1	-	1	138	c.138C>T	c.(136-138)ATC>ATT	p.I46I		NM_001001824	NP_001001824	Q8NH04	O2T27_HUMAN	olfactory receptor, family 2, subfamily T,	46	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;1.15e-05)|all_epithelial(71;5.29e-06)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.089)|Lung NSC(105;0.0969)|Melanoma(84;0.199)	all_cancers(173;0.237)	OV - Ovarian serous cystadenocarcinoma(106;0.0265)			GGATGAGAATGATCTTGACCA	0.532													4	30					0	0	1	0	0
GTPBP4	23560	broad.mit.edu	37	10	1041878	1041878	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr10:1041878C>T	uc001ift.2	+	3	300	c.229C>T	c.(229-231)CCG>TCG	p.P77S	GTPBP4_uc010qac.1_Intron|GTPBP4_uc001ifu.2_RNA|GTPBP4_uc010qad.1_Intron|GTPBP4_uc010qae.1_Missense_Mutation_p.P30S	NM_012341	NP_036473	Q9BZE4	NOG1_HUMAN	G protein-binding protein CRFG	77					negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of cell-cell adhesion|negative regulation of collagen binding|negative regulation of DNA replication|negative regulation of protein ubiquitination|protein stabilization|regulation of cyclin-dependent protein kinase activity|ribosome biogenesis	nucleolus|perinuclear region of cytoplasm	GTP binding|GTPase activity|protein binding			ovary(1)|skin(1)	2		all_epithelial(10;0.107)|Colorectal(49;0.14)	OV - Ovarian serous cystadenocarcinoma(33;0.0814)	Epithelial(11;0.0513)|all cancers(11;0.135)|OV - Ovarian serous cystadenocarcinoma(14;0.173)		GGATATTCATCCGTTCTATGC	0.313													6	23					0	0	1	0	0
NET1	10276	broad.mit.edu	37	10	5498852	5498852	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr10:5498852G>A	uc001iia.2	+	12	1824	c.1686G>A	c.(1684-1686)ATG>ATA	p.M562I	NET1_uc010qar.1_Missense_Mutation_p.M381I|NET1_uc001iib.2_Missense_Mutation_p.M508I|NET1_uc010qas.1_Missense_Mutation_p.M381I	NM_001047160	NP_001040625	Q7Z628	ARHG8_HUMAN	neuroepithelial cell transforming gene 1 isoform	562					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of cell growth|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|nucleus	Rho guanyl-nucleotide exchange factor activity			breast(1)	1						GCATGCAGATGGCAGAGGACA	0.527													12	49					0	0	1	0	0
PRKCQ	5588	broad.mit.edu	37	10	6533648	6533648	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr10:6533648C>T	uc001ijj.1	-	8	862	c.787G>A	c.(787-789)GAT>AAT	p.D263N	PRKCQ_uc009xim.1_Missense_Mutation_p.D263N|PRKCQ_uc001iji.1_Missense_Mutation_p.D296N|PRKCQ_uc009xin.1_Missense_Mutation_p.D227N|PRKCQ_uc010qax.1_Missense_Mutation_p.D138N	NM_006257	NP_006248	Q04759	KPCT_HUMAN	protein kinase C, theta	263	Phorbol-ester/DAG-type 2.				axon guidance|cellular component disassembly involved in apoptosis|intracellular signal transduction|membrane protein ectodomain proteolysis|platelet activation|regulation of cell growth|T cell receptor signaling pathway	cytosol	ATP binding|metal ion binding|protein binding|protein kinase C activity			ovary(3)|lung(2)|large_intestine(1)	6						GACTCACCATCACACTTGAGT	0.572													22	25					0	0	1	0	0
SFMBT2	57713	broad.mit.edu	37	10	7262487	7262487	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr10:7262487G>A	uc009xio.1	-	11	1307	c.1216C>T	c.(1216-1218)CGA>TGA	p.R406*	SFMBT2_uc001ijn.1_Nonsense_Mutation_p.R406*|SFMBT2_uc010qay.1_Intron	NM_001029880	NP_001025051	Q5VUG0	SMBT2_HUMAN	Scm-like with four mbt domains 2	406	MBT 4.				regulation of transcription, DNA-dependent	nucleus				ovary(4)|upper_aerodigestive_tract(2)|large_intestine(1)|central_nervous_system(1)	8						GTGAAACCTCGACTGAATGAT	0.502													19	75					0	0	1	0	0
FAM171A1	221061	broad.mit.edu	37	10	15255960	15255960	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr10:15255960G>A	uc001iob.2	-	8	1634	c.1627C>T	c.(1627-1629)CGA>TGA	p.R543*		NM_001010924	NP_001010924	Q5VUB5	F1711_HUMAN	hypothetical protein LOC221061 precursor	543	Cytoplasmic (Potential).					integral to membrane				ovary(2)|breast(1)|skin(1)	4						TCTACTGATCGCGACATCATA	0.537													23	128					0	0	1	0	0
CACNB2	783	broad.mit.edu	37	10	18803289	18803289	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr10:18803289C>T	uc001ipr.2	+	7	855	c.795C>T	c.(793-795)TTC>TTT	p.F265F	CACNB2_uc009xjz.1_Intron|CACNB2_uc001ips.2_Intron|CACNB2_uc001ipt.2_Intron|CACNB2_uc010qcl.1_Intron|CACNB2_uc001ipu.2_Silent_p.F237F|CACNB2_uc001ipv.2_Intron|CACNB2_uc009xka.1_Intron|CACNB2_uc001ipw.2_Intron|CACNB2_uc001ipx.2_Silent_p.F210F|CACNB2_uc009xkb.1_Intron|CACNB2_uc010qcm.1_Silent_p.F211F|CACNB2_uc001ipz.2_Intron|CACNB2_uc001ipy.2_Silent_p.F211F|CACNB2_uc010qcn.1_Intron|CACNB2_uc010qco.1_Intron|CACNB2_uc001iqa.2_Silent_p.F217F|NSUN6_uc001iqb.2_Intron	NM_201596	NP_963890	Q08289	CACB2_HUMAN	calcium channel, voltage-dependent, beta 2	265					axon guidance|neuromuscular junction development	integral to plasma membrane|sarcolemma|voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity			large_intestine(1)|central_nervous_system(1)|skin(1)	3					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	GAATGCCCTTCTTTAAGAAGG	0.453													32	35					0	0	1	0	0
PLXDC2	84898	broad.mit.edu	37	10	20290895	20290895	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr10:20290895G>A	uc001iqg.1	+	2	941	c.304G>A	c.(304-306)GAC>AAC	p.D102N	PLXDC2_uc001iqh.1_Missense_Mutation_p.D102N	NM_032812	NP_116201	Q6UX71	PXDC2_HUMAN	plexin domain containing 2 precursor	102	Extracellular (Potential).					integral to membrane				ovary(2)|central_nervous_system(1)|skin(1)	4						TGATGGGCAGGACAATAACAC	0.448													3	31					0	0	1	0	0
NEBL	10529	broad.mit.edu	37	10	21101732	21101732	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr10:21101732G>A	uc001iqi.2	-	24	2881	c.2484C>T	c.(2482-2484)ATC>ATT	p.I828I	NEBL_uc001iqj.2_RNA|NEBL_uc001iqk.2_Silent_p.I165I	NM_006393	NP_006384	O76041	NEBL_HUMAN	nebulette sarcomeric isoform	828	Nebulin 23.				regulation of actin filament length		actin binding|structural constituent of muscle			ovary(2)	2						CCATCTCCACGATGTGAGGGT	0.542													22	38					0	0	1	0	0
NEBL	10529	broad.mit.edu	37	10	21120416	21120416	+	Missense_Mutation	SNP	C	T	T	rs45461595		TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr10:21120416C>T	uc001iqi.2	-	15	1943	c.1546G>A	c.(1546-1548)GAG>AAG	p.E516K	NEBL_uc001iqj.2_RNA|NEBL_uc001iqk.2_Intron|NEBL_uc001iql.1_RNA	NM_006393	NP_006384	O76041	NEBL_HUMAN	nebulette sarcomeric isoform	516	Nebulin 14.				regulation of actin filament length		actin binding|structural constituent of muscle			ovary(2)	2						CTGGCCATCTCGGATGCTTTC	0.433													14	45					0	0	1	0	0
THNSL1	79896	broad.mit.edu	37	10	25314242	25314242	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr10:25314242C>T	uc001isi.3	+	3	2419	c.2090C>T	c.(2089-2091)TCA>TTA	p.S697L	ENKUR_uc001ish.1_Intron	NM_024838	NP_079114	Q8IYQ7	THNS1_HUMAN	threonine synthase-like 1	697					threonine biosynthetic process		ATP binding|pyridoxal phosphate binding|shikimate kinase activity|threonine synthase activity			pancreas(1)	1					L-Threonine(DB00156)|Pyridoxal Phosphate(DB00114)	TTGCTGGGTTCATACAATGCA	0.408													31	34					0	0	1	0	0
APBB1IP	54518	broad.mit.edu	37	10	26822398	26822398	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr10:26822398G>A	uc001iss.2	+	9	1165	c.844G>A	c.(844-846)GAA>AAA	p.E282K	APBB1IP_uc009xks.1_Missense_Mutation_p.E282K	NM_019043	NP_061916	Q7Z5R6	AB1IP_HUMAN	amyloid beta (A4) precursor protein-binding,	282					blood coagulation|signal transduction	cytoskeleton|cytosol|focal adhesion|lamellipodium				lung(4)|skin(2)|central_nervous_system(1)	7						AGGAAAAAAAGAAAGCAAGGA	0.343													9	25					0	0	1	0	0
ZEB1	6935	broad.mit.edu	37	10	31810812	31810812	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr10:31810812G>A	uc001ivs.3	+	7	2612	c.2549G>A	c.(2548-2550)AGC>AAC	p.S850N	ZEB1_uc001ivr.3_Missense_Mutation_p.S632N|ZEB1_uc010qee.1_Missense_Mutation_p.S632N|ZEB1_uc010qef.1_Missense_Mutation_p.S632N|ZEB1_uc009xlj.1_Missense_Mutation_p.S776N|ZEB1_uc010qeg.1_Missense_Mutation_p.S709N|ZEB1_uc009xlk.1_Missense_Mutation_p.S632N|ZEB1_uc001ivt.3_Missense_Mutation_p.S632N|ZEB1_uc001ivu.3_Missense_Mutation_p.S851N|ZEB1_uc001ivv.3_Missense_Mutation_p.S830N|ZEB1_uc010qeh.1_Missense_Mutation_p.S783N|ZEB1_uc009xlo.1_Missense_Mutation_p.S833N|ZEB1_uc009xlp.2_Missense_Mutation_p.S834N	NM_030751	NP_110378	P37275	ZEB1_HUMAN	zinc finger E-box binding homeobox 1 isoform b	850					cell proliferation|immune response|negative regulation of transcription from RNA polymerase II promoter|positive regulation of neuron differentiation	cytoplasm	E-box binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(3)|central_nervous_system(2)	5		Prostate(175;0.0156)				ACTACGGTCAGCCCTGCAGTC	0.458													24	23					0	0	1	0	0
ARHGAP12	94134	broad.mit.edu	37	10	32143022	32143022	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr10:32143022A>G	uc001ivz.1	-	5	1331	c.1061T>C	c.(1060-1062)TTA>TCA	p.L354S	ARHGAP12_uc001ivy.1_Intron|ARHGAP12_uc009xls.2_Intron|ARHGAP12_uc001iwb.1_Missense_Mutation_p.L352S|ARHGAP12_uc001iwc.1_Missense_Mutation_p.L352S|ARHGAP12_uc009xlq.1_Intron|ARHGAP12_uc001iwd.1_Missense_Mutation_p.L352S|ARHGAP12_uc009xlr.1_Missense_Mutation_p.L352S	NM_018287	NP_060757	Q8IWW6	RHG12_HUMAN	Rho GTPase activating protein 12	354					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity				0		Prostate(175;0.0199)				ACTGGTATATAAGGTATGCCC	0.388													22	36					0	0	1	0	0
NRP1	8829	broad.mit.edu	37	10	33486588	33486588	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr10:33486588G>A	uc001iwx.3	-	12	2437	c.1914C>T	c.(1912-1914)ACC>ACT	p.T638T	NRP1_uc001iwv.3_Silent_p.T638T|NRP1_uc009xlz.2_Silent_p.T631T|NRP1_uc001iww.3_Silent_p.T450T|NRP1_uc001iwy.3_Silent_p.T631T|NRP1_uc001iwz.2_Silent_p.T638T|NRP1_uc001ixa.2_Silent_p.T603T	NM_003873	NP_003864	O14786	NRP1_HUMAN	neuropilin 1 isoform a	638	Extracellular (Potential).				axon guidance|cell adhesion|cell-cell signaling|organ morphogenesis|positive regulation of cell proliferation	extracellular region|integral to membrane|plasma membrane	growth factor binding|heparin binding|metal ion binding|vascular endothelial growth factor receptor activity			central_nervous_system(2)|ovary(1)|skin(1)	4					Palifermin(DB00039)|Pegaptanib(DB04895)	CTGATTGTATGGTGCTGTCTA	0.443													7	19					0	0	1	0	0
RBP3	5949	broad.mit.edu	37	10	48389390	48389390	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr10:48389390G>A	uc001jez.2	-	1	1602	c.1488C>T	c.(1486-1488)TTC>TTT	p.F496F		NM_002900	NP_002891	P10745	RET3_HUMAN	retinol-binding protein 3 precursor	496	4 X approximate tandem repeats.|2.				lipid metabolic process|proteolysis|transport|visual perception	interphotoreceptor matrix	retinal binding|serine-type peptidase activity			large_intestine(1)|central_nervous_system(1)	2					Vitamin A(DB00162)	CAGGGCCCTGGAAGTAGGACA	0.652													28	24					0	0	1	0	0
RBP3	5949	broad.mit.edu	37	10	48390254	48390254	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr10:48390254C>T	uc001jez.2	-	1	738	c.624G>A	c.(622-624)ACG>ACA	p.T208T		NM_002900	NP_002891	P10745	RET3_HUMAN	retinol-binding protein 3 precursor	208	4 X approximate tandem repeats.|1.				lipid metabolic process|proteolysis|transport|visual perception	interphotoreceptor matrix	retinal binding|serine-type peptidase activity			large_intestine(1)|central_nervous_system(1)	2					Vitamin A(DB00162)	TCCAGATCTCCGTGGTGGTGT	0.612													18	39					0	0	1	0	0
Unknown	0	broad.mit.edu	37	10	48902150	48902150	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr10:48902150G>A	uc009xnv.2	-	3	829	c.723C>T	c.(721-723)ATC>ATT	p.I241I	uc001jga.2_5'Flank	NM_001077686	NP_001071154			ArfGAP with GTPase domain, ankyrin repeat and PH																		GGCTGGCCAGGATCTGGCTCT	0.567													23	146					0	0	1	0	0
FRMPD2	143162	broad.mit.edu	37	10	49395268	49395268	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr10:49395268G>A	uc001jgi.2	-	17	2340	c.2233C>T	c.(2233-2235)CTC>TTC	p.L745F	FRMPD2_uc001jgh.2_Missense_Mutation_p.L713F|FRMPD2_uc001jgj.2_Missense_Mutation_p.L723F	NM_001018071	NP_001018081	Q68DX3	FRPD2_HUMAN	FERM and PDZ domain containing 2 isoform 3	745					tight junction assembly	basolateral plasma membrane|cytoplasm|cytoskeleton|tight junction	1-phosphatidylinositol binding|protein binding			large_intestine(1)	1				Kidney(211;0.201)		GGTCCAGAGAGAGAGTCCCAG	0.567													8	19					0	0	1	0	0
FRMPD2	143162	broad.mit.edu	37	10	49448473	49448473	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr10:49448473C>T	uc001jgi.2	-	6	737	c.630G>A	c.(628-630)AGG>AGA	p.R210R	FRMPD2_uc001jgh.2_Silent_p.R179R|FRMPD2_uc001jgj.2_Silent_p.R188R	NM_001018071	NP_001018081	Q68DX3	FRPD2_HUMAN	FERM and PDZ domain containing 2 isoform 3	210					tight junction assembly	basolateral plasma membrane|cytoplasm|cytoskeleton|tight junction	1-phosphatidylinositol binding|protein binding			large_intestine(1)	1				Kidney(211;0.201)		GCAGCCTCTTCCTGAGCAGGT	0.587													13	14					0	0	1	0	0
C10orf72	196740	broad.mit.edu	37	10	50227719	50227719	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr10:50227719G>A	uc001jhf.2	-	8	968	c.939C>T	c.(937-939)ATC>ATT	p.I313I		NM_001031746	NP_001026916	Q8IW00	CJ072_HUMAN	hypothetical protein LOC196740 isoform 1	313	Cytoplasmic (Potential).					integral to membrane|plasma membrane					0						CCTCGAAGAGGATCTGGGCGT	0.517													7	23					0	0	1	0	0
C10orf72	196740	broad.mit.edu	37	10	50315832	50315832	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr10:50315832C>T	uc001jhf.2	-	2	293	c.264G>A	c.(262-264)GGG>GGA	p.G88G	C10orf72_uc001jhh.2_Silent_p.G88G	NM_001031746	NP_001026916	Q8IW00	CJ072_HUMAN	hypothetical protein LOC196740 isoform 1	88	Ig-like.|Extracellular (Potential).					integral to membrane|plasma membrane					0						GGCTGAAATTCCCATAGTACT	0.627													14	61					0	0	1	0	0
C10orf71	118461	broad.mit.edu	37	10	50531474	50531474	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr10:50531474G>A	uc010qgp.1	+	3	1223	c.884G>A	c.(883-885)GGA>GAA	p.G295E		NM_199459	NP_955629	Q711Q0	CJ071_HUMAN	hypothetical protein LOC118461 isoform 2	295											0						GACACAGCTGGAACCGTCCCA	0.542													17	21					0	0	1	0	0
DRGX	644168	broad.mit.edu	37	10	50594748	50594748	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr10:50594748C>T	uc010qgq.1	-	4	406	c.406G>A	c.(406-408)GAG>AAG	p.E136K		NM_001080520	NP_001073989	A6NNA5	DRGX_HUMAN	dorsal root ganglia homeobox	136					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						TCCAGCGCCTCCTTCTTACTC	0.642													14	29					0	0	1	0	0
OGDHL	55753	broad.mit.edu	37	10	50945839	50945839	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr10:50945839C>T	uc001jie.2	-	20	2725	c.2583G>A	c.(2581-2583)ATG>ATA	p.M861I	OGDHL_uc009xog.2_Missense_Mutation_p.M888I|OGDHL_uc010qgt.1_Missense_Mutation_p.M804I|OGDHL_uc010qgu.1_Missense_Mutation_p.M652I	NM_018245	NP_060715	Q9ULD0	OGDHL_HUMAN	oxoglutarate dehydrogenase-like isoform a	861					glycolysis	mitochondrial matrix	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			pancreas(1)	1						TACCGGATACCATTTGGTCAA	0.587													19	26					0	0	1	0	0
A1CF	29974	broad.mit.edu	37	10	52573626	52573626	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr10:52573626G>A	uc001jjj.2	-	10	1526	c.1338C>T	c.(1336-1338)CTC>CTT	p.L446L	A1CF_uc010qhn.1_Silent_p.L446L|A1CF_uc001jji.2_Silent_p.L438L|A1CF_uc001jjh.2_Silent_p.L446L|A1CF_uc010qho.1_Silent_p.L454L|A1CF_uc009xov.2_Silent_p.L438L	NM_138932	NP_620310	Q9NQ94	A1CF_HUMAN	apobec-1 complementation factor isoform 2	446					cytidine to uridine editing|mRNA modification|mRNA processing|protein stabilization	apolipoprotein B mRNA editing enzyme complex|endoplasmic reticulum|nucleoplasm	nucleotide binding|protein binding|single-stranded RNA binding			central_nervous_system(1)	1						CCTGGGGAGCGAGTTTAATTC	0.388													37	36					0	0	1	0	0
PCDH15	65217	broad.mit.edu	37	10	55582005	55582005	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr10:55582005G>A	uc001jju.1	-	33	5876	c.5481C>T	c.(5479-5481)TGC>TGT	p.C1827C	PCDH15_uc010qhq.1_Intron|PCDH15_uc010qhr.1_Intron|PCDH15_uc010qhs.1_Intron|PCDH15_uc010qht.1_Intron|PCDH15_uc010qhu.1_Intron|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_Silent_p.C1824C|PCDH15_uc010qhw.1_Silent_p.C1787C|PCDH15_uc010qhx.1_Silent_p.C1758C|PCDH15_uc010qhy.1_Silent_p.C1834C|PCDH15_uc010qhz.1_Silent_p.C1829C|PCDH15_uc010qia.1_Silent_p.C1807C|PCDH15_uc010qib.1_Silent_p.C1804C	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	1827	Poly-Pro.|Cytoplasmic (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				gaggtggagggcaaggaatag	0.279										HNSCC(58;0.16)			15	43					0	0	1	0	0
FAM13C	220965	broad.mit.edu	37	10	61022398	61022398	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr10:61022398C>T	uc001jkn.2	-	11	1166	c.1032G>A	c.(1030-1032)AAG>AAA	p.K344K	FAM13C_uc001jko.2_Intron|FAM13C_uc010qid.1_Silent_p.K261K|FAM13C_uc010qie.1_Silent_p.K261K|FAM13C_uc010qif.1_Silent_p.K366K|FAM13C_uc001jkp.2_Silent_p.K261K	NM_198215	NP_937858	Q8NE31	FA13C_HUMAN	hypothetical protein LOC220965 isoform 1	344										ovary(2)	2						ACAGCTTTAGCTTTAGTTCTA	0.448													8	42					0	0	1	0	0
FAM13C	220965	broad.mit.edu	37	10	61028352	61028352	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr10:61028352C>T	uc001jkn.2	-	9	1037	c.903G>A	c.(901-903)CGG>CGA	p.R301R	FAM13C_uc001jko.2_Silent_p.R301R|FAM13C_uc010qid.1_Silent_p.R218R|FAM13C_uc010qie.1_Silent_p.R218R|FAM13C_uc010qif.1_Silent_p.R323R|FAM13C_uc001jkp.2_Silent_p.R218R	NM_198215	NP_937858	Q8NE31	FA13C_HUMAN	hypothetical protein LOC220965 isoform 1	301										ovary(2)	2						CTTCAAATTTCCGAATTTTCC	0.507													21	18					0	0	1	0	0
SLC16A9	220963	broad.mit.edu	37	10	61443904	61443904	+	Missense_Mutation	SNP	C	T	T	rs143724578		TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr10:61443904C>T	uc010qig.1	-	2	595	c.146G>A	c.(145-147)GGA>GAA	p.G49E		NM_194298	NP_919274	Q7RTY1	MOT9_HUMAN	solute carrier family 16 (monocarboxylic acid	49	Cytoplasmic (Potential).				urate metabolic process	integral to membrane|plasma membrane	symporter activity	p.G49E(1)		skin(2)|ovary(1)	3						GGCTGTTTTTCCTTTTCCTTC	0.428													62	67					0	0	1	0	0
ANK3	288	broad.mit.edu	37	10	61829465	61829465	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr10:61829465C>T	uc001jky.2	-	37	11366	c.11174G>A	c.(11173-11175)GGA>GAA	p.G3725E	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	3725					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TGCAGAAATTCCCATTTTTAT	0.463													82	110					0	0	1	0	0
ANK3	288	broad.mit.edu	37	10	61831288	61831288	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr10:61831288G>A	uc001jky.2	-	37	9543	c.9351C>T	c.(9349-9351)ATC>ATT	p.I3117I	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	3117					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						CCTGACTTATGATTTTTTTTA	0.403													51	80					0	0	1	0	0
ANK3	288	broad.mit.edu	37	10	61835477	61835477	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr10:61835477G>A	uc001jky.2	-	37	5354	c.5162C>T	c.(5161-5163)TCC>TTC	p.S1721F	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	1721	Ser-rich.				establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TTTTAGAGGGGAAATAGATCC	0.408													4	64					0	0	1	0	0
ANK3	288	broad.mit.edu	37	10	61846503	61846503	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr10:61846503C>T	uc001jky.2	-	30	3872	c.3680G>A	c.(3679-3681)GGA>GAA	p.G1227E	ANK3_uc001jkw.2_Missense_Mutation_p.G361E|ANK3_uc009xpa.2_Missense_Mutation_p.G361E|ANK3_uc001jkx.2_Missense_Mutation_p.G405E|ANK3_uc010qih.1_Missense_Mutation_p.G1228E|ANK3_uc001jkz.3_Missense_Mutation_p.G1221E|ANK3_uc001jla.1_Missense_Mutation_p.G293E|ANK3_uc001jlb.1_Missense_Mutation_p.G745E	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	1227					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TACACCTTCTCCTGAGGGCGG	0.463													36	53					0	0	1	0	0
ANK3	288	broad.mit.edu	37	10	61874029	61874029	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr10:61874029C>T	uc001jky.2	-	26	3094	c.2902G>A	c.(2902-2904)GAC>AAC	p.D968N	ANK3_uc001jkw.2_Missense_Mutation_p.D102N|ANK3_uc009xpa.2_Missense_Mutation_p.D102N|ANK3_uc001jkx.2_Missense_Mutation_p.D146N|ANK3_uc010qih.1_Missense_Mutation_p.D969N|ANK3_uc001jkz.3_Missense_Mutation_p.D962N|ANK3_uc001jla.1_Missense_Mutation_p.D34N|ANK3_uc001jlb.1_Missense_Mutation_p.D475N	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	968					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TCTAAGGTGTCTGCAGCCCAG	0.348													9	34					0	0	1	0	0
CDK1	983	broad.mit.edu	37	10	62545509	62545509	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr10:62545509C>T	uc001jld.2	+	4	416	c.282C>T	c.(280-282)ATC>ATT	p.I94I	CDK1_uc010qii.1_Silent_p.I94I|CDK1_uc001jle.2_RNA|CDK1_uc001jlf.2_Silent_p.I94I|CDK1_uc001jlg.2_Silent_p.I94I	NM_001786	NP_001777	P06493	CDK1_HUMAN	cell division cycle 2 isoform 1	94	Protein kinase.				activation of MAPK activity|activation of MAPKK activity|anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|anti-apoptosis|axon guidance|cell division|epidermal growth factor receptor signaling pathway|innate immune response|insulin receptor signaling pathway|mitosis|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein localization to kinetochore|Ras protein signal transduction|regulation of transcription involved in G1/S phase of mitotic cell cycle|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|midbody|nucleoplasm|spindle microtubule	ATP binding|cyclin-dependent protein kinase activity|RNA polymerase II carboxy-terminal domain kinase activity			ovary(1)	1						TGGATTCTATCCCTCCTGGTC	0.343													65	76					0	0	1	0	0
ZNF365	22891	broad.mit.edu	37	10	64136348	64136348	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr10:64136348G>T	uc001jmc.2	+	2	711	c.396G>T	c.(394-396)ATG>ATT	p.M132I	ZNF365_uc001jly.3_Missense_Mutation_p.M147I|ZNF365_uc001jmb.3_Missense_Mutation_p.M132I|ZNF365_uc001jlz.3_Missense_Mutation_p.M132I|ZNF365_uc001jma.3_Intron	NM_199451	NP_955523	Q70YC4	TALAN_HUMAN	zinc finger protein 365 isoform C	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment										ovary(1)|skin(1)	2	Prostate(12;0.0297)|all_hematologic(501;0.228)					ACACTGCCATGGACCTCCATG	0.517													12	47					5.50884e-06	5.55324e-06	1	1	0
JMJD1C	221037	broad.mit.edu	37	10	64968147	64968147	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr10:64968147G>A	uc001jmn.2	-	10	3582	c.3282C>T	c.(3280-3282)TTC>TTT	p.F1094F	JMJD1C_uc001jml.2_Silent_p.F875F|JMJD1C_uc001jmm.2_Silent_p.F806F|JMJD1C_uc010qiq.1_Silent_p.F912F|JMJD1C_uc009xpi.2_Silent_p.F912F|JMJD1C_uc009xpj.1_RNA|JMJD1C_uc009xpk.1_Silent_p.F131F	NM_032776	NP_116165	Q15652	JHD2C_HUMAN	jumonji domain containing 1C isoform a	1094					blood coagulation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	histone demethylase activity (H3-K9 specific)|metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|thyroid hormone receptor binding			ovary(4)|breast(1)|central_nervous_system(1)	6	Prostate(12;0.0119)|all_hematologic(501;0.191)					ACAATGTAGTGAAATAGTTAC	0.378													37	128					0	0	1	0	0
SIRT1	23411	broad.mit.edu	37	10	69666591	69666591	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr10:69666591C>T	uc001jnd.2	+	5	1040	c.987C>T	c.(985-987)TTC>TTT	p.F329F	SIRT1_uc010qis.1_Silent_p.F34F|SIRT1_uc009xpp.2_Silent_p.F137F|SIRT1_uc001jne.2_Silent_p.F26F	NM_012238	NP_036370	Q96EB6	SIRT1_HUMAN	sirtuin 1 isoform a	329	Deacetylase sirtuin-type.				apoptosis|cell aging|cellular response to hydrogen peroxide|cellular response to starvation|chromatin silencing at rDNA|DNA repair|DNA replication|establishment of chromatin silencing|histone H3 deacetylation|interspecies interaction between organisms|maintenance of chromatin silencing|muscle organ development|negative regulation of androgen receptor signaling pathway|negative regulation of cell growth|negative regulation of DNA damage response, signal transduction by p53 class mediator|negative regulation of fat cell differentiation|negative regulation of helicase activity|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|peptidyl-lysine acetylation|peptidyl-lysine deacetylation|positive regulation of anti-apoptosis|positive regulation of chromatin silencing|positive regulation of DNA repair|regulation of apoptosis|regulation of cell proliferation|regulation of endodeoxyribonuclease activity|regulation of protein import into nucleus, translocation|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|rRNA processing|transcription, DNA-dependent|triglyceride mobilization|white fat cell differentiation	chromatin silencing complex|cytoplasm|nuclear euchromatin|nuclear heterochromatin|nuclear inner membrane|nucleolus|PML body|rDNA heterochromatin	bHLH transcription factor binding|histone binding|HLH domain binding|identical protein binding|mitogen-activated protein kinase binding|NAD+ binding|NAD-dependent histone deacetylase activity (H3-K9 specific)|p53 binding|protein C-terminus binding|transcription corepressor activity|zinc ion binding				0						GTCACAAATTCATAGCCTTGT	0.388													22	17					0	0	1	0	0
MYPN	84665	broad.mit.edu	37	10	69902756	69902756	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr10:69902756G>A	uc001jnm.3	+	4	1147	c.962G>A	c.(961-963)GGA>GAA	p.G321E	MYPN_uc001jnl.1_Missense_Mutation_p.G321E|MYPN_uc001jnn.3_Missense_Mutation_p.G46E|MYPN_uc001jno.3_Missense_Mutation_p.G321E|MYPN_uc001jnp.1_Missense_Mutation_p.G321E|MYPN_uc009xps.2_Missense_Mutation_p.G321E|MYPN_uc009xpt.2_Missense_Mutation_p.G321E|MYPN_uc010qit.1_Missense_Mutation_p.G27E|MYPN_uc010qiu.1_RNA	NM_032578	NP_115967	Q86TC9	MYPN_HUMAN	myopalladin	321	Interaction with CARP.|Ig-like 1.					nucleus|sarcomere	actin binding			ovary(3)|skin(2)	5						GTCCAGGCAGGAAATCTGCAC	0.473													16	48					0	0	1	0	0
STOX1	219736	broad.mit.edu	37	10	70645892	70645892	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr10:70645892C>T	uc001jos.2	+	3	2427	c.2340C>T	c.(2338-2340)ACC>ACT	p.T780T	STOX1_uc001jor.2_Intron|STOX1_uc009xpy.2_Intron|STOX1_uc001joq.2_Silent_p.T670T	NM_001130161	NP_001123633	Q6ZVD7	STOX1_HUMAN	storkhead box 1 isoform a	780						cytoplasm|nucleolus	DNA binding			kidney(1)|skin(1)	2						GATCTCTGACCGAGTACAACA	0.468													14	43					0	0	1	0	0
TSPAN15	23555	broad.mit.edu	37	10	71255444	71255444	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr10:71255444A>G	uc001jpo.1	+	4	577	c.452A>G	c.(451-453)AAG>AGG	p.K151R		NM_012339	NP_036471	O95858	TSN15_HUMAN	transmembrane 4 superfamily member 15	151	Extracellular (Potential).					integral to plasma membrane|membrane fraction					0						GTTCAGAAAAAGGTGAGCCAG	0.493													3	23					0	0	1	0	0
PLA2G12B	84647	broad.mit.edu	37	10	74700993	74700993	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr10:74700993G>A	uc001jtf.1	-	3	467	c.400C>T	c.(400-402)CGA>TGA	p.R134*	PLA2G12B_uc009xqt.1_Nonsense_Mutation_p.R44*|PLA2G12B_uc010qjz.1_Nonsense_Mutation_p.R134*	NM_032562	NP_115951	Q9BX93	PG12B_HUMAN	phospholipase A2, group XIIB precursor	134					lipid catabolic process	extracellular region	calcium ion binding|phospholipase A2 activity			ovary(1)	1	Prostate(51;0.0198)					AGACACCATCGGAATTTTGCA	0.507													45	61					0	0	1	0	0
TTC18	118491	broad.mit.edu	37	10	75037036	75037036	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr10:75037036C>T	uc009xrc.2	-	22	2813	c.2692G>A	c.(2692-2694)GAG>AAG	p.E898K	TTC18_uc001jty.2_Missense_Mutation_p.E898K|TTC18_uc001jtv.3_Missense_Mutation_p.E2K|TTC18_uc001jtw.3_Missense_Mutation_p.E2K|TTC18_uc001jtx.2_Missense_Mutation_p.E279K	NM_145170	NP_660153	Q5T0N1	TTC18_HUMAN	tetratricopeptide repeat domain 18	898							binding			ovary(2)|central_nervous_system(1)	3	Prostate(51;0.0119)					TGTATGGTCTCCATGAAGATG	0.383													14	73					0	0	1	0	0
DYDC2	84332	broad.mit.edu	37	10	82126470	82126470	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr10:82126470G>A	uc001kca.1	+	5	677	c.297G>A	c.(295-297)ACG>ACA	p.T99T	DYDC2_uc001kbz.1_RNA|DYDC2_uc001kcb.1_Silent_p.T99T	NM_032372	NP_115748	Q96IM9	DYDC2_HUMAN	DPY30 domain containing 2	99							protein binding				0			Colorectal(32;0.229)			CTGTTTCCACGAAGAAGACCA	0.423													30	109					0	0	1	0	0
PDE6C	5146	broad.mit.edu	37	10	95372905	95372905	+	Silent	SNP	G	A	A	rs143390578		TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr10:95372905G>A	uc001kiu.3	+	1	561	c.423G>A	c.(421-423)GGG>GGA	p.G141G		NM_006204	NP_006195	P51160	PDE6C_HUMAN	phosphodiesterase 6C	141	GAF 1.				visual perception	plasma membrane	3',5'-cyclic-GMP phosphodiesterase activity|cGMP binding|metal ion binding			ovary(2)|kidney(1)|skin(1)	4		Colorectal(252;0.123)				TGGACATTGGGATAGTGGGTT	0.527													17	55					0	0	1	0	0
CYP2C18	1562	broad.mit.edu	37	10	96454742	96454742	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr10:96454742C>T	uc001kjv.3	+	4	876	c.550C>T	c.(550-552)CAT>TAT	p.H184Y	CYP2C18_uc001kjw.3_Missense_Mutation_p.H184Y|CYP2C19_uc009xus.1_Intron|CYP2C19_uc010qny.1_5'UTR	NM_000772	NP_000763	P33260	CP2CI_HUMAN	cytochrome P450 family 2 subfamily C polypeptide	184					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(3)|lung(1)|skin(1)	5		Colorectal(252;0.09)		all cancers(201;2.8e-06)|KIRC - Kidney renal clear cell carcinoma(50;0.0646)|Kidney(138;0.0805)		TGTTATTTTCCATGATCGATT	0.398													14	59					0	0	1	0	0
TLL2	7093	broad.mit.edu	37	10	98182396	98182396	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr10:98182396C>T	uc001kml.1	-	6	953	c.727G>A	c.(727-729)GAG>AAG	p.E243K	TLL2_uc009xvf.1_Missense_Mutation_p.E191K	NM_012465	NP_036597	Q9Y6L7	TLL2_HUMAN	tolloid-like 2 precursor	243	Metalloprotease (By similarity).	By similarity.			cell differentiation|multicellular organismal development|proteolysis	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3		Colorectal(252;0.0846)		Epithelial(162;1.51e-07)|all cancers(201;7.59e-06)		TGGCCCAGCTCGTGAGCCACA	0.552													12	42					0	0	1	0	0
SLIT1	6585	broad.mit.edu	37	10	98825813	98825813	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr10:98825813G>A	uc001kmw.2	-	5	696	c.444C>T	c.(442-444)ATC>ATT	p.I148I	SLIT1_uc009xvh.1_Silent_p.I148I	NM_003061	NP_003052	O75093	SLIT1_HUMAN	slit homolog 1 precursor	148	LRR 4.				axon extension involved in axon guidance|forebrain morphogenesis|motor axon guidance|negative chemotaxis|negative regulation of synaptogenesis	cytoplasm|extracellular space	calcium ion binding|Roundabout binding			ovary(4)	4		Colorectal(252;0.162)		Epithelial(162;2.02e-08)|all cancers(201;1.5e-06)		CTTTCCTGGGGATGGCCTGGA	0.557													3	11					0	0	1	0	0
RRP12	23223	broad.mit.edu	37	10	99148129	99148129	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr10:99148129C>T	uc001knf.2	-	8	1036	c.897G>A	c.(895-897)AAG>AAA	p.K299K	RRP12_uc009xvm.2_Intron|RRP12_uc010qou.1_Silent_p.K238K|RRP12_uc009xvn.2_Silent_p.K199K	NM_015179	NP_055994	Q5JTH9	RRP12_HUMAN	ribosomal RNA processing 12 homolog isoform 1	299						integral to membrane|nuclear membrane|nucleolus	protein binding			ovary(2)|central_nervous_system(1)	3		Colorectal(252;0.162)		Epithelial(162;2.72e-09)|all cancers(201;1.76e-07)		TGGTGGCCTCCTTGGAGCCTG	0.637													11	45					0	0	1	0	0
SFXN3	81855	broad.mit.edu	37	10	102795757	102795758	+	Splice_Site	DNP	CA	AT	AT			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr10:102795757_102795758CA>AT	uc001ksp.2	+	5	801	c.345_splice	c.e5-2	p.R115_splice	SFXN3_uc001ksq.2_Intron|SFXN3_uc010qpx.1_Missense_Mutation_p.R119W	NM_030971	NP_112233	Q9BWM7	SFXN3_HUMAN	sideroflexin 3						iron ion homeostasis	integral to membrane|mitochondrial membrane	cation transmembrane transporter activity			ovary(1)	1		Colorectal(252;0.234)		Epithelial(162;6.98e-09)|all cancers(201;3.55e-07)		TTTGTTCCCTCAGGAAGACCCC	0.515													27	30					0	0	1	0	0
FBXW4	6468	broad.mit.edu	37	10	103371486	103371486	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr10:103371486G>A	uc001kto.2	-	8	1364	c.1018C>T	c.(1018-1020)CTG>TTG	p.L340L		NM_022039	NP_071322	P57775	FBXW4_HUMAN	F-box and WD repeat domain containing 4	340	WD 4.				ubiquitin-dependent protein catabolic process|Wnt receptor signaling pathway	ubiquitin ligase complex				skin(1)	1		Colorectal(252;0.123)		Epithelial(162;4.35e-08)|all cancers(201;1.92e-06)		AGGCAGTACAGGGTGCTGTCG	0.602													20	44					0	0	1	0	0
PPRC1	23082	broad.mit.edu	37	10	103908398	103908398	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr10:103908398C>T	uc001kum.2	+	11	4603	c.4564C>T	c.(4564-4566)CGT>TGT	p.R1522C	PPRC1_uc001kun.2_Missense_Mutation_p.R1400C|PPRC1_uc010qqj.1_Missense_Mutation_p.R1258C|PPRC1_uc009xxa.2_RNA	NM_015062	NP_055877	Q5VV67	PPRC1_HUMAN	peroxisome proliferator-activated receptor	1522	Arg-rich.|Ser-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleotide binding|RNA binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Colorectal(252;0.122)		Epithelial(162;4.97e-08)|all cancers(201;8.99e-07)		CAGCTCTTATCGTTCACATGA	0.502													32	96					0	0	1	0	0
NOLC1	9221	broad.mit.edu	37	10	103921621	103921622	+	Missense_Mutation	DNP	GG	AA	AA	rs147728236		TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr10:103921621_103921622GG>AA	uc001kuo.2	+	12	2115_2116	c.1880_1881GG>AA	c.(1879-1881)AGG>AAA	p.R627K	NOLC1_uc001kup.2_Missense_Mutation_p.R637K|NOLC1_uc001kuq.2_Missense_Mutation_p.R628K|NOLC1_uc009xxb.1_Missense_Mutation_p.R346K|NOLC1_uc001kur.2_Missense_Mutation_p.R346K	NM_004741	NP_004732	Q14978	NOLC1_HUMAN	nucleolar and coiled-body phosphoprotein 1	627					mitosis|rRNA processing	cytoplasm|nucleolus	ATP binding|GTP binding|protein binding			ovary(1)	1		Colorectal(252;0.122)		Epithelial(162;5.19e-08)|all cancers(201;9.43e-07)		CCATTCCGAAGGGTCAGGGAGG	0.475													6	50					0	0	1	0	0
PSD	5662	broad.mit.edu	37	10	104172317	104172317	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr10:104172317G>A	uc001kvg.1	-	6	2096	c.1569C>T	c.(1567-1569)AGC>AGT	p.S523S	PSD_uc001kvh.1_Silent_p.S144S|PSD_uc009xxd.1_Silent_p.S523S	NM_002779	NP_002770	A5PKW4	PSD1_HUMAN	pleckstrin and Sec7 domain containing	523	SEC7.				regulation of ARF protein signal transduction	cytoplasm|plasma membrane|ruffle	ARF guanyl-nucleotide exchange factor activity|signal transducer activity			breast(2)|urinary_tract(1)	3				Epithelial(162;1.27e-08)|all cancers(201;2.85e-07)		ACACCAGCTGGCTCAGGGGTG	0.632													10	11					0	0	1	0	0
INA	9118	broad.mit.edu	37	10	105048248	105048248	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr10:105048248C>T	uc001kws.2	+	3	1371	c.1322C>T	c.(1321-1323)TCC>TTC	p.S441F		NM_032727	NP_116116	Q16352	AINX_HUMAN	internexin neuronal intermediate filament	441	Tail.				cell differentiation|nervous system development	neurofilament	structural constituent of cytoskeleton			ovary(1)|breast(1)	2				Epithelial(162;3.45e-09)|all cancers(201;9.17e-08)|BRCA - Breast invasive adenocarcinoma(275;0.198)		AAAGTCTCATCCACTGGGCTA	0.473													20	90					0	0	1	0	0
NEURL	9148	broad.mit.edu	37	10	105350125	105350125	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr10:105350125C>T	uc001kxh.2	+	6	2131	c.1721C>T	c.(1720-1722)TCC>TTC	p.S574F	SH3PXD2A_uc010qqr.1_Intron	NM_004210	NP_004201	O76050	NEU1A_HUMAN	neuralized-like	574					nervous system development	perinuclear region of cytoplasm	zinc ion binding				0				Epithelial(162;2.12e-09)|all cancers(201;6.99e-08)|BRCA - Breast invasive adenocarcinoma(275;0.125)		TACCGCAGCTCCTAGCCCGTT	0.632													5	26					0	0	1	0	0
SORCS3	22986	broad.mit.edu	37	10	106865211	106865211	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr10:106865211C>T	uc001kyi.1	+	7	1377	c.1150C>T	c.(1150-1152)CCT>TCT	p.P384S		NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	384	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity	p.P384L(1)		ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		TAGAAGTGGGCCTTTTGCCCG	0.478													22	81					0	0	1	0	0
SORCS3	22986	broad.mit.edu	37	10	106918692	106918692	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr10:106918692C>T	uc001kyi.1	+	11	1899	c.1672C>T	c.(1672-1674)CCA>TCA	p.P558S		NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	558	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		CTCTGAAAATCCATATTCCTC	0.448													9	50					0	0	1	0	0
SORCS3	22986	broad.mit.edu	37	10	106982982	106982982	+	Missense_Mutation	SNP	T	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr10:106982982T>A	uc001kyi.1	+	20	3070	c.2843T>A	c.(2842-2844)TTC>TAC	p.F948Y	SORCS3_uc010qqz.1_RNA	NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	948	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		CTTACCTATTTCTGGTGGTTC	0.443													80	94					0	0	1	0	0
XPNPEP1	7511	broad.mit.edu	37	10	111637758	111637758	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr10:111637758C>T	uc001kyp.1	-	13	1252	c.1112G>A	c.(1111-1113)AGG>AAG	p.R371K	XPNPEP1_uc009xxt.1_Missense_Mutation_p.R414K|XPNPEP1_uc001kyq.1_Missense_Mutation_p.R300K|XPNPEP1_uc010qrb.1_Missense_Mutation_p.R414K|XPNPEP1_uc010qra.1_Missense_Mutation_p.R138K	NM_020383	NP_065116	Q9NQW7	XPP1_HUMAN	X-prolyl aminopeptidase (aminopeptidase P) 1,	371					bradykinin catabolic process|proteolysis		manganese ion binding|metalloaminopeptidase activity|protein homodimerization activity			ovary(3)|pancreas(1)	4		Breast(234;0.174)		Epithelial(162;1.64e-05)|all cancers(201;0.000564)|BRCA - Breast invasive adenocarcinoma(275;0.0721)		GGATCCTTACCTGCGAAACTC	0.458													34	53					0	0	1	0	0
TECTB	6975	broad.mit.edu	37	10	114053547	114053547	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr10:114053547G>A	uc001kzr.1	+	5	535	c.535G>A	c.(535-537)GAA>AAA	p.E179K		NM_058222	NP_478129	Q96PL2	TECTB_HUMAN	tectorin beta precursor	179	ZP.					anchored to membrane|plasma membrane|proteinaceous extracellular matrix					0		Colorectal(252;0.198)		Epithelial(162;0.0143)|all cancers(201;0.0242)		GGAGGCATCCGAAATCGGTTC	0.408													21	40					0	0	1	0	0
ATRNL1	26033	broad.mit.edu	37	10	117308974	117308974	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr10:117308974C>T	uc001lcg.2	+	26	4109	c.3723C>T	c.(3721-3723)TTC>TTT	p.F1241F	ATRNL1_uc010qsm.1_Silent_p.F370F|ATRNL1_uc010qsn.1_RNA	NM_207303	NP_997186	Q5VV63	ATRN1_HUMAN	attractin-like 1 precursor	1241	Helical; (Potential).					integral to membrane	sugar binding			ovary(5)|lung(1)|central_nervous_system(1)	7		all_lung(145;0.0686)|Breast(234;0.0969)|Lung NSC(174;0.17)|Colorectal(252;0.234)		Epithelial(162;0.00031)|all cancers(201;0.000753)|LUSC - Lung squamous cell carcinoma(1;0.0515)|Lung(30;0.0827)		CCAGTTGTTTCCTATCCTTAT	0.313													8	26					0	0	1	0	0
GFRA1	2674	broad.mit.edu	37	10	117884912	117884912	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr10:117884912C>G	uc001lcj.2	-	6	1288	c.590G>C	c.(589-591)CGG>CCG	p.R197P	GFRA1_uc001lci.2_Missense_Mutation_p.R192P|GFRA1_uc009xyr.2_Missense_Mutation_p.R192P	NM_005264	NP_005255	P56159	GFRA1_HUMAN	GDNF family receptor alpha 1 isoform a	197	2.				axon guidance	anchored to membrane|extrinsic to membrane|plasma membrane	glial cell-derived neurotrophic factor receptor activity			ovary(1)|pancreas(1)	2		Lung NSC(174;0.21)		all cancers(201;0.0337)		AAAGAACTGCCGGAGGGCCTT	0.607													9	33					0	0	1	0	0
SLC18A2	6571	broad.mit.edu	37	10	119014871	119014871	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr10:119014871G>C	uc001ldd.1	+	7	815	c.784G>C	c.(784-786)GAT>CAT	p.D262H	SLC18A2_uc009xyy.1_Missense_Mutation_p.D59H	NM_003054	NP_003045	Q05940	VMAT2_HUMAN	solute carrier family 18 (vesicular monoamine),	262	Helical; (Potential).				neurotransmitter secretion	clathrin sculpted monoamine transport vesicle membrane|integral to plasma membrane|membrane fraction	monoamine transmembrane transporter activity				0		Colorectal(252;0.19)		all cancers(201;0.029)	Alseroxylon(DB00386)|Reserpine(DB00206)|Tetrabenazine(DB04844)	GGTACTCTTGGATGGAGGTGA	0.612													24	23					0	0	1	0	0
GRK5	2869	broad.mit.edu	37	10	121140380	121140380	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr10:121140380C>T	uc001led.2	+	3	435	c.202C>T	c.(202-204)CGG>TGG	p.R68W	GRK5_uc009xzh.2_5'UTR|GRK5_uc010qta.1_5'UTR	NM_005308	NP_005299	P34947	GRK5_HUMAN	G protein-coupled receptor kinase 5	68	N-terminal.|RGS.				G-protein signaling, coupled to cAMP nucleotide second messenger|regulation of G-protein coupled receptor protein signaling pathway|tachykinin receptor signaling pathway	cytoplasm|plasma membrane|soluble fraction	ATP binding|G-protein coupled receptor kinase activity|phospholipid binding|protein kinase C binding|signal transducer activity			lung(2)|stomach(1)	3		Lung NSC(174;0.0971)|all_lung(145;0.127)|Ovarian(717;0.249)		all cancers(201;0.0227)		GCTGCTTTTCCGGCAGTTTTG	0.517													39	66					0	0	1	0	0
INPP5F	22876	broad.mit.edu	37	10	121565915	121565915	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr10:121565915C>T	uc001leo.2	+	12	1529	c.1363C>T	c.(1363-1365)CGT>TGT	p.R455C		NM_014937	NP_055752	Q9Y2H2	SAC2_HUMAN	inositol polyphosphate-5-phosphatase F	455	SAC.						phosphoric ester hydrolase activity			ovary(2)	2		Lung NSC(174;0.109)|all_lung(145;0.142)		all cancers(201;0.00205)|BRCA - Breast invasive adenocarcinoma(275;0.158)		AGGGATTTTTCGTGTTAATTG	0.378													5	12					0	0	1	0	0
SEC23IP	11196	broad.mit.edu	37	10	121658272	121658272	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr10:121658272C>T	uc001leu.1	+	2	569	c.497C>T	c.(496-498)TCA>TTA	p.S166L	SEC23IP_uc010qtc.1_Intron	NM_007190	NP_009121	Q9Y6Y8	S23IP_HUMAN	Sec23-interacting protein p125	166	Interaction with SEC23A.|Pro-rich.				Golgi organization|intracellular protein transport	endoplasmic reticulum|ER to Golgi transport vesicle membrane|ER-Golgi intermediate compartment	metal ion binding			ovary(3)	3		Lung NSC(174;0.109)|all_lung(145;0.142)|all_neural(114;0.234)		all cancers(201;0.00515)		CTCCCTCCTTCATATTTTGGG	0.493													20	54					0	0	1	0	0
FGFR2	2263	broad.mit.edu	37	10	123243278	123243278	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr10:123243278G>A	uc010qtk.1	-	18	2882	c.2235C>T	c.(2233-2235)TCC>TCT	p.S745S	FGFR2_uc010qtg.1_Silent_p.S633S|FGFR2_uc010qth.1_Silent_p.S630S|FGFR2_uc010qti.1_Silent_p.S656S|FGFR2_uc010qtj.1_Silent_p.S746S|FGFR2_uc010qtl.1_Silent_p.S629S|FGFR2_uc010qtm.1_Silent_p.S628S|FGFR2_uc001lfl.3_Silent_p.S746S|FGFR2_uc001lfm.2_Silent_p.S657S|FGFR2_uc001lfg.3_Silent_p.S353S|FGFR2_uc001lfk.1_RNA	NM_000141	NP_000132	P21802	FGFR2_HUMAN	fibroblast growth factor receptor 2 isoform 1	745	Cytoplasmic (Potential).|Protein kinase.				angiogenesis|axonogenesis|bone mineralization|bone morphogenesis|branch elongation involved in salivary gland morphogenesis|branching involved in embryonic placenta morphogenesis|branching morphogenesis of a nerve|bud elongation involved in lung branching|cell fate commitment|cell growth|cell-cell signaling|cellular response to protein stimulus|embryonic digestive tract morphogenesis|embryonic pattern specification|epithelial cell proliferation involved in salivary gland morphogenesis|fibroblast growth factor receptor signaling pathway involved in hemopoiesis|fibroblast growth factor receptor signaling pathway involved in mammary gland specification|fibroblast growth factor receptor signaling pathway involved in negative regulation of apoptosis in bone marrow|fibroblast growth factor receptor signaling pathway involved in orbitofrontal cortex development|fibroblast growth factor receptor signaling pathway involved in positive regulation of cell proliferation in bone marrow|hair follicle morphogenesis|insulin receptor signaling pathway|lacrimal gland development|lateral sprouting from an epithelium|limb bud formation|lung alveolus development|lung lobe morphogenesis|lung-associated mesenchyme development|mammary gland bud formation|membranous septum morphogenesis|mesenchymal cell differentiation involved in lung development|mesenchymal cell proliferation involved in lung development|midbrain development|multicellular organism growth|negative regulation of transcription from RNA polymerase II promoter|odontogenesis|organ growth|otic vesicle formation|outflow tract septum morphogenesis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cardiac muscle cell proliferation|positive regulation of cell cycle|positive regulation of cell division|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of ERK1 and ERK2 cascade|positive regulation of mesenchymal cell proliferation|positive regulation of transcription from RNA polymerase II promoter|post-embryonic development|prostate epithelial cord arborization involved in prostate glandular acinus morphogenesis|prostate epithelial cord elongation|pyramidal neuron development|regulation of branching involved in prostate gland morphogenesis|regulation of cell fate commitment|regulation of fibroblast growth factor receptor signaling pathway|regulation of multicellular organism growth|regulation of smooth muscle cell differentiation|regulation of smoothened signaling pathway|squamous basal epithelial stem cell differentiation involved in prostate gland acinus development|ureteric bud development|ventricular cardiac muscle tissue morphogenesis|ventricular zone neuroblast division	cell cortex|cell surface|excitatory synapse|extracellular region|integral to membrane|nucleus|plasma membrane	ATP binding|fibroblast growth factor binding|fibroblast growth factor binding|fibroblast growth factor receptor activity|heparin binding|protein binding			endometrium(44)|skin(28)|lung(11)|ovary(4)|cervix(2)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|soft_tissue(1)|central_nervous_system(1)	96		Lung NSC(174;0.0841)|all_lung(145;0.106)|all_neural(114;0.107)	STAD - Stomach adenocarcinoma(1;7.52e-05)|all cancers(1;0.0722)	all cancers(201;9.73e-05)|GBM - Glioblastoma multiforme(135;0.0845)	Palifermin(DB00039)	TTGGTCTCTGGGAGGGCACTG	0.453		5	Mis		gastric. NSCLC|endometrial		Crouzon|Pfeiffer|and Apert syndromes		Apert_syndrome|Saethre-Chotzen_syndrome				15	23					0	0	1	0	0
TACC2	10579	broad.mit.edu	37	10	123845439	123845439	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr10:123845439G>A	uc001lfv.2	+	4	3784	c.3424G>A	c.(3424-3426)GGA>AGA	p.G1142R	TACC2_uc001lfw.2_Intron|TACC2_uc009xzx.2_Missense_Mutation_p.G1142R|TACC2_uc010qtv.1_Missense_Mutation_p.G1142R	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	1142						microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				AGGAGACCCAGGAAAGCAGCA	0.587													13	29					0	0	1	0	0
TACC2	10579	broad.mit.edu	37	10	123971130	123971130	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr10:123971130C>T	uc001lfv.2	+	9	7550	c.7190C>T	c.(7189-7191)TCC>TTC	p.S2397F	TACC2_uc001lfw.2_Missense_Mutation_p.S543F|TACC2_uc009xzx.2_Missense_Mutation_p.S2352F|TACC2_uc010qtv.1_Missense_Mutation_p.S2401F|TACC2_uc001lfx.2_Missense_Mutation_p.S101F|TACC2_uc001lfy.2_Missense_Mutation_p.S101F|TACC2_uc001lfz.2_Missense_Mutation_p.S475F|TACC2_uc001lga.2_Missense_Mutation_p.S475F|TACC2_uc009xzy.2_Missense_Mutation_p.S475F|TACC2_uc001lgb.2_Missense_Mutation_p.S432F|TACC2_uc010qtw.1_Missense_Mutation_p.S492F	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	2397	SPAZ.					microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				TCCCCAGCCTCCTTTGAGATC	0.512													13	64					0	0	1	0	0
HTRA1	5654	broad.mit.edu	37	10	124266255	124266255	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr10:124266255G>A	uc001lgj.2	+	4	954	c.826G>A	c.(826-828)GGA>AGA	p.G276R		NM_002775	NP_002766	Q92743	HTRA1_HUMAN	HtrA serine peptidase 1 precursor	276	Serine protease.				proteolysis|regulation of cell growth	extracellular space	insulin-like growth factor binding|serine-type endopeptidase activity				0		all_neural(114;0.0765)|Lung NSC(174;0.133)|all_lung(145;0.163)|Breast(234;0.238)				GCTGCGGCCGGGAGAGTTCGT	0.587													10	75					0	0	1	0	0
DMBT1	1755	broad.mit.edu	37	10	124402817	124402817	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr10:124402817C>T	uc001lgk.1	+	53	7251	c.7145C>T	c.(7144-7146)TCG>TTG	p.S2382L	DMBT1_uc001lgl.1_Missense_Mutation_p.S2372L|DMBT1_uc001lgm.1_Missense_Mutation_p.S1754L|DMBT1_uc009xzz.1_Missense_Mutation_p.S2381L|DMBT1_uc010qtx.1_Missense_Mutation_p.S1102L|DMBT1_uc009yab.1_Missense_Mutation_p.S1085L|DMBT1_uc009yac.1_Missense_Mutation_p.S676L	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	2382					epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				GTGTTGAGGTCGAAGAGGGAT	0.607													33	50					0	0	1	0	0
IKZF5	64376	broad.mit.edu	37	10	124755640	124755640	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr10:124755640G>A	uc001lha.2	-	4	485	c.186C>T	c.(184-186)TCC>TCT	p.S62S	IKZF5_uc001lgz.2_5'Flank	NM_022466	NP_071911	Q9H5V7	IKZF5_HUMAN	zinc finger protein, subfamily 1A, 5	62					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_neural(114;0.169)|Colorectal(57;0.178)|Glioma(114;0.222)		Colorectal(40;0.0701)|COAD - Colon adenocarcinoma(40;0.0754)		TTTCATCCAAGGAAACTTCAA	0.423													14	46					0	0	1	0	0
CHST15	51363	broad.mit.edu	37	10	125805406	125805406	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr10:125805406G>A	uc001lhl.2	-	1	836	c.323C>T	c.(322-324)TCA>TTA	p.S108L	CHST15_uc001lhm.2_Missense_Mutation_p.S108L|CHST15_uc001lhn.2_Missense_Mutation_p.S108L|CHST15_uc010que.1_Missense_Mutation_p.S108L|CHST15_uc001lho.2_Missense_Mutation_p.S108L	NM_015892	NP_056976	Q7LFX5	CHSTF_HUMAN	B cell RAG associated protein	108	Lumenal (Potential).				hexose biosynthetic process	Golgi membrane|integral to membrane	3'-phosphoadenosine 5'-phosphosulfate binding|N-acetylgalactosamine 4-sulfate 6-O-sulfotransferase activity			ovary(1)	1						GAAAGGTGATGAGATCAGAAG	0.478													28	71					0	0	1	0	0
MGMT	4255	broad.mit.edu	37	10	131565063	131565063	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr10:131565063C>T	uc001lkh.2	+	5	545	c.519C>T	c.(517-519)CTC>CTT	p.L173L		NM_002412	NP_002403	P16455	MGMT_HUMAN	O-6-methylguanine-DNA methyltransferase	142										ovary(1)|breast(1)	2		all_cancers(35;9.44e-09)|all_epithelial(44;6.98e-08)|Lung NSC(174;0.0157)|all_lung(145;0.0201)|all_neural(114;0.0732)|Colorectal(57;0.0792)|Breast(234;0.167)		OV - Ovarian serous cystadenocarcinoma(35;0.00291)		TCCCCATCCTCATCCCGTGCC	0.627								Direct_reversal_of_damage					11	16					0	0	1	0	0
LRRC27	80313	broad.mit.edu	37	10	134158130	134158130	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr10:134158130C>T	uc010quw.1	+	5	724	c.529C>T	c.(529-531)CTC>TTC	p.L177F	LRRC27_uc001llf.2_Missense_Mutation_p.L177F|LRRC27_uc010quv.1_Missense_Mutation_p.L177F|LRRC27_uc001llg.2_RNA|LRRC27_uc001lli.2_Missense_Mutation_p.L177F|LRRC27_uc001llj.2_Missense_Mutation_p.L115F|LRRC27_uc001llk.3_Missense_Mutation_p.L50F	NM_030626	NP_085129	Q9C0I9	LRC27_HUMAN	leucine rich repeat containing 27 isoform a	177										ovary(1)	1		all_cancers(35;6.28e-08)|all_epithelial(44;6.75e-06)|Lung NSC(174;0.0108)|all_lung(145;0.0173)|all_neural(114;0.0726)|Glioma(114;0.172)|Melanoma(40;0.175)|Colorectal(31;0.19)		OV - Ovarian serous cystadenocarcinoma(35;9.12e-05)|Epithelial(32;0.000116)|all cancers(32;0.000145)|BRCA - Breast invasive adenocarcinoma(275;0.218)		AGAACACTCTCTCCCCAGAAA	0.478													36	40					0	0	1	0	0
KNDC1	85442	broad.mit.edu	37	10	135010603	135010603	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr10:135010603G>A	uc001llz.1	+	11	1777	c.1776G>A	c.(1774-1776)CGG>CGA	p.R592R	KNDC1_uc001lma.1_Silent_p.R527R|KNDC1_uc001lmb.1_Silent_p.R4R	NM_152643	NP_689856	Q76NI1	VKIND_HUMAN	kinase non-catalytic C-lobe domain (KIND)	592	KIND 2.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction					upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(35;4.16e-10)|all_epithelial(44;2.07e-08)|Lung NSC(174;0.000845)|all_lung(145;0.00145)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.173)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;8.77e-06)|Epithelial(32;1.13e-05)|all cancers(32;1.51e-05)		TGGACAGCCGGAAAATCCTTG	0.662													5	21					0	0	1	0	0
HRAS	3265	broad.mit.edu	37	11	534285	534285	+	Missense_Mutation	SNP	C	T	T	rs104894226		TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:534285C>T	uc001lpv.2	-	2	226	c.38G>A	c.(37-39)GGT>GAT	p.G13D	HRAS_uc010qvw.1_Missense_Mutation_p.G13D|HRAS_uc010qvx.1_Missense_Mutation_p.G13D|HRAS_uc010qvy.1_RNA	NM_005343	NP_005334	P01112	RASH_HUMAN	v-Ha-ras Harvey rat sarcoma viral oncogene	13	GTP.		G -> D (in FCSS).|G -> C (in FCSS).		activation of MAPKK activity|axon guidance|blood coagulation|cell cycle arrest|cellular senescence|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|mitotic cell cycle G1/S transition checkpoint|negative regulation of cell proliferation|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of DNA replication|positive regulation of epithelial cell proliferation|Ras protein signal transduction|synaptic transmission	cytosol|Golgi membrane|plasma membrane	GTP binding|GTPase activity|protein C-terminus binding	p.G13R(33)|p.G13V(10)|p.G13D(9)|p.G13S(9)|p.G13C(6)|p.G13G(1)|p.G12_G13insAG(1)		urinary_tract(174)|thyroid(155)|skin(126)|upper_aerodigestive_tract(112)|soft_tissue(37)|prostate(29)|salivary_gland(24)|cervix(23)|stomach(14)|pituitary(10)|lung(9)|haematopoietic_and_lymphoid_tissue(9)|breast(6)|testis(5)|endometrium(4)|bone(3)|large_intestine(2)|oesophagus(2)|penis(2)|kidney(1)|adrenal_gland(1)|thymus(1)	749		all_cancers(49;4.37e-09)|all_epithelial(84;2.09e-06)|Breast(177;0.000162)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.0538)|all_lung(207;0.0713)		all cancers(45;7.63e-28)|Epithelial(43;7.29e-27)|OV - Ovarian serous cystadenocarcinoma(40;7.15e-21)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0375)|LUSC - Lung squamous cell carcinoma(625;0.0703)	Sulindac(DB00605)	CTTGCCCACACCGCCGGCGCC	0.642		6	Mis		infrequent sarcomas|rare other types	rhadomyosarcoma|ganglioneuroblastoma|bladder			Costello_syndrome	HNSCC(11;0.0054)			29	35					0	0	1	0	0
MOB2	81532	broad.mit.edu	37	11	1501680	1501680	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:1501680C>T	uc010qwz.1	-	3	498	c.308G>A	c.(307-309)AGC>AAC	p.S103N	MOB2_uc001lto.1_5'UTR|MOB2_uc001ltp.1_5'UTR|MOB2_uc001ltq.1_Missense_Mutation_p.S66N|MOB2_uc010qwy.1_5'UTR	NM_053005	NP_443731	Q70IA6	MOB2_HUMAN	HCCA2 protein	72						nucleus|perinuclear region of cytoplasm	metal ion binding				0						GGAGATGGTGCTATACTGCAG	0.567													39	106					0	0	1	0	0
LSP1	4046	broad.mit.edu	37	11	1908751	1908751	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:1908751G>A	uc001lui.2	+	10	1153	c.978G>A	c.(976-978)GGG>GGA	p.G326G	LSP1_uc001luj.2_Silent_p.G454G|LSP1_uc001luk.2_Silent_p.G264G|LSP1_uc001lul.2_Silent_p.G264G|LSP1_uc001lum.2_Silent_p.G264G	NM_002339	NP_002330	P33241	LSP1_HUMAN	lymphocyte-specific protein 1 isoform 1	326					cellular component movement|cellular defense response	actin cytoskeleton|Golgi apparatus|plasma membrane	actin binding|signal transducer activity			large_intestine(1)	1		all_epithelial(84;0.000138)|Breast(177;0.000962)|Ovarian(85;0.0014)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00147)|Lung(200;0.0729)|LUSC - Lung squamous cell carcinoma(625;0.0856)		CCGGGCATGGGAAGTATGAGA	0.567													50	60					0	0	1	0	0
MRGPRE	116534	broad.mit.edu	37	11	3249392	3249392	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:3249392C>T	uc001lxq.3	-	2	945	c.635G>A	c.(634-636)CGG>CAG	p.R212Q		NM_001039165	NP_001034254	Q86SM8	MRGRE_HUMAN	MAS-related GPR, member E	212	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			large_intestine(1)|ovary(1)	2		Medulloblastoma(188;0.00106)|all_epithelial(84;0.00111)|Breast(177;0.00328)|Ovarian(85;0.00556)|all_neural(188;0.00681)		BRCA - Breast invasive adenocarcinoma(625;0.00529)|LUSC - Lung squamous cell carcinoma(625;0.19)		AGGGAAGCCCCGGGGTGGGGG	0.672													11	0					0	0	1	0	0
CHRNA10	57053	broad.mit.edu	37	11	3688747	3688747	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:3688747C>A	uc001lyf.2	-	4	682	c.610G>T	c.(610-612)GTG>TTG	p.V204L	CHRNA10_uc010qxt.1_5'UTR|CHRNA10_uc010qxu.1_5'UTR	NM_020402	NP_065135	Q9GZZ6	ACH10_HUMAN	cholinergic receptor, nicotinic, alpha 10	204	Extracellular (Potential).				elevation of cytosolic calcium ion concentration|regulation of cell proliferation|synaptic transmission, cholinergic	cell junction|postsynaptic membrane	calcium channel activity|receptor activity|receptor binding			ovary(1)	1		Medulloblastoma(188;0.0075)|Breast(177;0.0164)|all_neural(188;0.0577)		BRCA - Breast invasive adenocarcinoma(625;0.0344)|LUSC - Lung squamous cell carcinoma(625;0.192)	Chloroprocaine(DB01161)|Methadone(DB00333)|Nicotine(DB00184)|Pentolinium(DB01090)|Procaine(DB00721)|Trimethaphan(DB01116)	ATGCCCAGCACGCGCCACTCC	0.736													7	8					1.12685e-05	1.13536e-05	1	1	0
PGAP2	27315	broad.mit.edu	37	11	3838601	3838601	+	Missense_Mutation	SNP	T	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:3838601T>A	uc001lys.2	+	3	310	c.184T>A	c.(184-186)TTC>ATC	p.F62I	PGAP2_uc001lyl.2_Intron|PGAP2_uc010qxw.1_Missense_Mutation_p.F119I|PGAP2_uc010qxx.1_Intron|PGAP2_uc001lyp.3_Intron|PGAP2_uc010qxy.1_Intron|PGAP2_uc010qxz.1_Intron|PGAP2_uc001lyn.3_Intron|PGAP2_uc010qya.1_Intron|PGAP2_uc001lyr.2_Intron|PGAP2_uc010qyb.1_Intron|PGAP2_uc001lyt.2_Intron	NM_014489	NP_055304	Q9UHJ9	PGAP2_HUMAN	FGF receptor activating protein 1 isoform 1	62					GPI anchor biosynthetic process	endoplasmic reticulum membrane|Golgi membrane|integral to membrane	protein transporter activity				0						CTGCAGGATGTTCTCTGCGGC	0.602													62	72					0	0	1	0	0
STIM1	6786	broad.mit.edu	37	11	4104196	4104196	+	Missense_Mutation	SNP	A	C	C			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:4104196A>C	uc001lyv.2	+	9	1790	c.1222A>C	c.(1222-1224)AAA>CAA	p.K408Q	STIM1_uc009yef.2_Missense_Mutation_p.K408Q|STIM1_uc009yeg.2_Missense_Mutation_p.K235Q	NM_003156	NP_003147	Q13586	STIM1_HUMAN	stromal interaction molecule 1 precursor	408	Cytoplasmic (Potential).				activation of store-operated calcium channel activity|calcium ion transport|detection of calcium ion|platelet activation	integral to endoplasmic reticulum membrane|integral to plasma membrane|microtubule	calcium ion binding|microtubule plus-end binding			pancreas(1)	1		Breast(177;0.00159)|Medulloblastoma(188;0.00258)|all_neural(188;0.0233)		BRCA - Breast invasive adenocarcinoma(625;0.114)|LUSC - Lung squamous cell carcinoma(625;0.141)		TGTAGATCATAAAATTCTAAC	0.448													17	66					0	0	1	0	0
OR51F1	256892	broad.mit.edu	37	11	4790312	4790312	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:4790312G>A	uc010qyl.1	-	1	836	c.836C>T	c.(835-837)GCT>GTT	p.A279V		NM_001004752	NP_001004752	A6NLW9	A6NLW9_HUMAN	olfactory receptor, family 51, subfamily F,	279						integral to membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.0778)		Epithelial(150;5.87e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0045)|LUSC - Lung squamous cell carcinoma(625;0.192)		GTATACATTAGCCATCACTGA	0.483													7	75					0	0	1	0	0
OR51A7	119687	broad.mit.edu	37	11	4928683	4928683	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:4928683C>T	uc010qyq.1	+	1	84	c.84C>T	c.(82-84)TCC>TCT	p.S28S		NM_001004749	NP_001004749	Q8NH64	O51A7_HUMAN	olfactory receptor, family 51, subfamily A,	28	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;4.77e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|LUSC - Lung squamous cell carcinoma(625;0.19)		TTTGGTTCTCCATCCCCATTT	0.453													22	83					0	0	1	0	0
OR51G2	81282	broad.mit.edu	37	11	4935975	4935975	+	Nonsense_Mutation	SNP	G	A	A	rs145892529	byFrequency	TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:4935975G>A	uc001lzr.1	-	1	919	c.919C>T	c.(919-921)CGA>TGA	p.R307*		NM_001005238	NP_001005238	Q8NGK0	O51G2_HUMAN	olfactory receptor, family 51, subfamily G,	307	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		TGCGTCACTCGATCCCGGATC	0.463													31	19					0	0	1	0	0
OR51G2	81282	broad.mit.edu	37	11	4936406	4936406	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:4936406G>A	uc001lzr.1	-	1	488	c.488C>T	c.(487-489)CCA>CTA	p.P163L		NM_001005238	NP_001005238	Q8NGK0	O51G2_HUMAN	olfactory receptor, family 51, subfamily G,	163	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		AAAAGGTAATGGAAAAATGAG	0.473													38	20					0	0	1	0	0
OR51G2	81282	broad.mit.edu	37	11	4936441	4936441	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:4936441C>T	uc001lzr.1	-	1	453	c.453G>A	c.(451-453)CTG>CTA	p.L151L		NM_001005238	NP_001005238	Q8NGK0	O51G2_HUMAN	olfactory receptor, family 51, subfamily G,	151	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		CCAGAGAGACCAGGCCAATCC	0.473													33	29					0	0	1	0	0
OR51A4	401666	broad.mit.edu	37	11	4967600	4967600	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:4967600G>A	uc010qys.1	-	1	731	c.731C>T	c.(730-732)TCA>TTA	p.S244L		NM_001005329	NP_001005329	Q8NGJ6	O51A4_HUMAN	olfactory receptor, family 51, subfamily A,	244	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;3.22e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0284)|LUSC - Lung squamous cell carcinoma(625;0.19)		ACAGATGTGTGAAACACAAGT	0.473													18	134					0	0	1	0	0
OR51A2	401667	broad.mit.edu	37	11	4976213	4976213	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:4976213G>A	uc010qyt.1	-	1	731	c.731C>T	c.(730-732)TCA>TTA	p.S244L		NM_001004748	NP_001004748	Q8NGJ7	O51A2_HUMAN	olfactory receptor, family 51, subfamily A,	244	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;3.22e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0284)|LUSC - Lung squamous cell carcinoma(625;0.19)		ACAGATGTGTGAAACACAAGT	0.478													32	110					0	0	1	0	0
OR51L1	119682	broad.mit.edu	37	11	5020433	5020433	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:5020433G>A	uc010qyu.1	+	1	221	c.221G>A	c.(220-222)GGG>GAG	p.G74E		NM_001004755	NP_001004755	Q8NGJ5	O51L1_HUMAN	olfactory receptor, family 51, subfamily L,	74	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0061)|all_neural(188;0.0479)|Breast(177;0.086)		Epithelial(150;1.75e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0285)|LUSC - Lung squamous cell carcinoma(625;0.19)		AATGACCTGGGGATGTCCCTG	0.458													50	126					0	0	1	0	0
OR52A5	390054	broad.mit.edu	37	11	5153042	5153042	+	Silent	SNP	G	A	A	rs144490949		TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:5153042G>A	uc010qyx.1	-	1	831	c.831C>T	c.(829-831)ATC>ATT	p.I277I		NM_001005160	NP_001005160	Q9H2C5	O52A5_HUMAN	olfactory receptor, family 52, subfamily A,	277	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.I277I(1)		skin(2)|lung(1)|central_nervous_system(1)	4		Medulloblastoma(188;0.0049)|all_neural(188;0.0442)|Breast(177;0.0675)		Epithelial(150;1.74e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.2)		TTGACAAGAGGATATGAATAT	0.403													23	67					0	0	1	0	0
OR52A1	23538	broad.mit.edu	37	11	5172901	5172901	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:5172901C>T	uc010qyy.1	-	1	699	c.699G>A	c.(697-699)CAG>CAA	p.Q233Q		NM_012375	NP_036507	Q9UKL2	O52A1_HUMAN	olfactory receptor, family 52, subfamily A,	233	Cytoplasmic (Potential).				sensory perception of smell	integral to plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2		Medulloblastoma(188;0.00106)|Breast(177;0.0155)|all_neural(188;0.0189)		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TAGCCTCCTTCTGGGGCAAAC	0.433													22	60					0	0	1	0	0
OR51B5	282763	broad.mit.edu	37	11	5363925	5363925	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:5363925G>A	uc001map.1	-	1	830	c.830C>T	c.(829-831)GCC>GTC	p.A277V	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron	NM_001005567	NP_001005567	Q9H339	O51B5_HUMAN	olfactory receptor, family 51, subfamily B,	277	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;3.05e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CAGAAAATAGGCATAGCTCAT	0.383													43	32					0	0	1	0	0
OR52D1	390066	broad.mit.edu	37	11	5510698	5510698	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:5510698C>T	uc010qzg.1	+	1	762	c.762C>T	c.(760-762)TTC>TTT	p.F254F	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001005163	NP_001005163	Q9H346	O52D1_HUMAN	olfactory receptor, family 52, subfamily D,	254	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;3.46e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TCCTGGTTTTCTACATCCCTG	0.507													68	79					0	0	1	0	0
UBQLNL	143630	broad.mit.edu	37	11	5537037	5537037	+	Missense_Mutation	SNP	G	A	A	rs147073799		TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:5537037G>A	uc001maz.3	-	1	920	c.635C>T	c.(634-636)TCC>TTC	p.S212F	HBG2_uc001mak.1_Intron	NM_145053	NP_659490	Q8IYU4	UBQLN_HUMAN	ubiquilin-like	212										large_intestine(2)|skin(1)	3		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;1.92e-09)|BRCA - Breast invasive adenocarcinoma(625;0.136)		AAGAAGGCGGGAAACTTCTGG	0.468													138	115					0	0	1	0	0
TRIM22	10346	broad.mit.edu	37	11	5729476	5729476	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:5729476C>T	uc001mbr.2	+	6	1124	c.847C>T	c.(847-849)CTG>TTG	p.L283L	TRIM5_uc001mbq.1_Intron|TRIM22_uc009yet.1_Silent_p.L251L|TRIM22_uc009yes.2_Silent_p.L279L|TRIM22_uc010qzm.1_Silent_p.L111L|TRIM22_uc009yeu.2_Silent_p.L94L|OR56B1_uc001mbs.1_5'UTR|OR56B1_uc009yev.1_5'UTR	NM_006074	NP_006065	Q8IYM9	TRI22_HUMAN	tripartite motif-containing 22	283	B30.2/SPRY.				immune response|interspecies interaction between organisms|protein trimerization|response to virus	Cajal body|Golgi apparatus|nuclear speck	ligase activity|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding				0		Medulloblastoma(188;0.00225)|Breast(177;0.0204)|all_neural(188;0.0212)		Epithelial(150;7.54e-09)|BRCA - Breast invasive adenocarcinoma(625;0.14)		AGTACCAGATCTGAGTGGGAT	0.423													13	47					0	0	1	0	0
OR56B1	387748	broad.mit.edu	37	11	5758616	5758616	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:5758616C>T	uc001mbt.1	+	1	870	c.870C>T	c.(868-870)ATC>ATT	p.I290I	TRIM5_uc001mbq.1_Intron|TRIM22_uc009yet.1_Intron	NM_001005180	NP_001005180	Q8NGI3	O56B1_HUMAN	olfactory receptor, family 56, subfamily B,	290	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.086)		Epithelial(150;1.74e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.184)		TGCACAACATCATCCCCCCTT	0.408													70	225					0	0	1	0	0
OR52E6	390078	broad.mit.edu	37	11	5862462	5862462	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:5862462G>A	uc010qzq.1	-	1	666	c.666C>T	c.(664-666)ATC>ATT	p.I222I	TRIM5_uc001mbq.1_Intron	NM_001005167	NP_001005167	Q96RD3	O52E6_HUMAN	olfactory receptor, family 52, subfamily E,	222	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;2.55e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CAGCATAGAGGATCCTGATAT	0.463													25	14					0	0	1	0	0
OR52E4	390081	broad.mit.edu	37	11	5905957	5905957	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:5905957C>T	uc010qzs.1	+	1	435	c.435C>T	c.(433-435)ATC>ATT	p.I145I	TRIM5_uc001mbq.1_Intron	NM_001005165	NP_001005165	Q8NGH9	O52E4_HUMAN	olfactory receptor, family 52, subfamily E,	145	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;1.24e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CCATCAGTATCCTAGCTTCTG	0.453													39	141					0	0	1	0	0
OR56A3	390083	broad.mit.edu	37	11	5969286	5969286	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:5969286C>T	uc010qzt.1	+	1	710	c.710C>T	c.(709-711)GCC>GTC	p.A237V		NM_001003443	NP_001003443	Q8NH54	O56A3_HUMAN	olfactory receptor, family 56, subfamily A,	237	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;9.41e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GCAGAGGGTGCCGTGGCAAAG	0.522													5	278					0	0	1	0	0
C11orf42	160298	broad.mit.edu	37	11	6231685	6231685	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:6231685C>T	uc001mcj.2	+	2	726	c.678C>T	c.(676-678)GTC>GTT	p.V226V		NM_173525	NP_775796	Q8N5U0	CK042_HUMAN	hypothetical protein LOC160298	226	Pro-rich.									ovary(1)	1		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;1.95e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CCAACTGGGTCAGACCCAACC	0.587													77	89					0	0	1	0	0
OR10A4	283297	broad.mit.edu	37	11	6898403	6898403	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:6898403G>A	uc010rat.1	+	1	525	c.525G>A	c.(523-525)GTG>GTA	p.V175V		NM_207186	NP_997069	Q9H209	O10A4_HUMAN	olfactory receptor, family 10, subfamily A,	175	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.78e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		CCAACAGGGTGAACCACTTCT	0.522													37	103					0	0	1	0	0
OR2D2	120776	broad.mit.edu	37	11	6913246	6913246	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:6913246G>A	uc010rau.1	-	1	486	c.486C>T	c.(484-486)TTC>TTT	p.F162F		NM_003700	NP_003691	Q9H210	OR2D2_HUMAN	olfactory receptor, family 2, subfamily D,	162	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.68e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		GCCTCAGTATGAAGGTGGTGT	0.507													39	29					0	0	1	0	0
SBF2	81846	broad.mit.edu	37	11	9875182	9875182	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:9875182G>A	uc001mib.2	-	20	2579	c.2441C>T	c.(2440-2442)TCT>TTT	p.S814F	SBF2_uc001mif.3_Missense_Mutation_p.S570F|uc001mig.2_Intron	NM_030962	NP_112224	Q86WG5	MTMRD_HUMAN	SET binding factor 2	814					myelination	cytoplasm|membrane	phosphatase activity|protein binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3				all cancers(16;2.88e-11)|Epithelial(150;3.61e-10)|BRCA - Breast invasive adenocarcinoma(625;0.00887)		CCGCACAACAGAATTGGCAAT	0.403													52	101					0	0	1	0	0
ARNTL	406	broad.mit.edu	37	11	13393715	13393715	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:13393715C>T	uc001mkr.2	+	13	1234	c.826C>T	c.(826-828)CGA>TGA	p.R276*	ARNTL_uc001mko.2_Nonsense_Mutation_p.R232*|ARNTL_uc001mkp.2_Nonsense_Mutation_p.R275*|ARNTL_uc001mkq.2_Nonsense_Mutation_p.R275*|ARNTL_uc001mks.2_Nonsense_Mutation_p.R233*|ARNTL_uc001mkt.2_Nonsense_Mutation_p.R276*|ARNTL_uc001mku.2_RNA|ARNTL_uc009ygm.1_Intron|ARNTL_uc001mkv.1_Nonsense_Mutation_p.R233*|ARNTL_uc001mkw.2_Nonsense_Mutation_p.R233*|ARNTL_uc001mkx.2_Nonsense_Mutation_p.R274*	NM_001178	NP_001169	O00327	BMAL1_HUMAN	aryl hydrocarbon receptor nuclear	276					circadian rhythm|positive regulation of transcription from RNA polymerase II promoter	transcription factor complex	aryl hydrocarbon receptor binding|DNA binding|Hsp90 protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity				0				Epithelial(150;0.0243)		TCTAGCAGATCGAAAAAGCTT	0.512													44	135					0	0	1	0	0
SPON1	10418	broad.mit.edu	37	11	14287092	14287092	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:14287092G>A	uc001mle.2	+	17	2821	c.2283G>A	c.(2281-2283)ACG>ACA	p.T761T		NM_006108	NP_006099	Q9HCB6	SPON1_HUMAN	spondin 1, extracellular matrix protein	761	TSP type-1 6.				cell adhesion	extracellular space|proteinaceous extracellular matrix	protein binding				0				Epithelial(150;0.00898)		GCCCATGGACGGCCTGGTCAG	0.418													8	23					0	0	1	0	0
ABCC8	6833	broad.mit.edu	37	11	17483288	17483288	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:17483288C>G	uc001mnc.2	-	5	790	c.664G>C	c.(664-666)GTG>CTG	p.V222L	ABCC8_uc010rcy.1_Missense_Mutation_p.V222L	NM_000352	NP_000343	Q09428	ABCC8_HUMAN	ATP-binding cassette, sub-family C, member 8	222	Cytoplasmic (By similarity).				carbohydrate metabolic process|energy reserve metabolic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium ion transmembrane transporter activity|sulfonylurea receptor activity			ovary(1)	1				READ - Rectum adenocarcinoma(2;0.0325)|Colorectal(2;0.1)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)|Gliclazide(DB01120)|Mitiglinide(DB01252)|Nateglinide(DB00731)|Repaglinide(DB00912)	AGCAGATTCACGAAGGGCTGC	0.577													245	597					0	0	1	0	0
MRGPRX3	117195	broad.mit.edu	37	11	18159571	18159571	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:18159571C>T	uc001mnu.2	+	3	1183	c.822C>T	c.(820-822)TTC>TTT	p.F274F		NM_054031	NP_473372	Q96LB0	MRGX3_HUMAN	MAS-related GPR, member X3	274	Helical; Name=7; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(1)|pancreas(1)	2						TTTACTTCTTCGTGGGCTCCT	0.512													38	73					0	0	1	0	0
CSRP3	8048	broad.mit.edu	37	11	19206523	19206523	+	Nonsense_Mutation	SNP	T	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:19206523T>A	uc001mpk.2	-	5	601	c.484A>T	c.(484-486)AAA>TAA	p.K162*		NM_003476	NP_003467	P50461	CSRP3_HUMAN	cysteine and glycine-rich protein 3	162	LIM zinc-binding 2.				cell differentiation|skeletal muscle tissue development	cytoskeleton|nucleus	protein binding|zinc ion binding				0						TCCCCATCTTTGTCAGTGACA	0.453													35	65					0	0	1	0	0
SLC6A5	9152	broad.mit.edu	37	11	20658840	20658840	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:20658840G>A	uc001mqd.2	+	12	2133	c.1860G>A	c.(1858-1860)ATG>ATA	p.M620I	SLC6A5_uc009yic.2_Missense_Mutation_p.M385I	NM_004211	NP_004202	Q9Y345	SC6A5_HUMAN	solute carrier family 6 (neurotransmitter	620	Helical; Name=9; (Potential).				synaptic transmission	integral to membrane|plasma membrane	glycine:sodium symporter activity|neurotransmitter:sodium symporter activity			ovary(2)|breast(1)|skin(1)	4					Glycine(DB00145)	GTTTTCCAATGATCACTCAGG	0.527													22	70					0	0	1	0	0
ANO3	63982	broad.mit.edu	37	11	26677682	26677682	+	Nonsense_Mutation	SNP	G	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:26677682G>T	uc001mqt.3	+	25	2732	c.2587G>T	c.(2587-2589)GGA>TGA	p.G863*	ANO3_uc010rdr.1_Nonsense_Mutation_p.G847*|ANO3_uc010rds.1_Nonsense_Mutation_p.G702*|ANO3_uc010rdt.1_Nonsense_Mutation_p.G717*	NM_031418	NP_113606	Q9BYT9	ANO3_HUMAN	transmembrane protein 16C	863	Extracellular (Potential).					chloride channel complex	chloride channel activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						TTGCTTGAAGGGATATGTCAA	0.348													21	56					1.55469e-16	1.57676e-16	1	1	0
SLC5A12	159963	broad.mit.edu	37	11	26692740	26692740	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:26692740C>T	uc001mra.2	-	15	2079	c.1766G>A	c.(1765-1767)GGA>GAA	p.G589E	SLC5A12_uc001mrb.2_RNA	NM_178498	NP_848593	Q1EHB4	SC5AC_HUMAN	solute carrier family 5 (sodium/glucose	589	Cytoplasmic (Potential).				sodium ion transport	apical plasma membrane|integral to membrane	symporter activity			ovary(1)|skin(1)	2						TCTTCTGAGTCCGTTCTGTAA	0.438													90	116					0	0	1	0	0
BBOX1	8424	broad.mit.edu	37	11	27077075	27077075	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:27077075G>A	uc001mre.1	+	3	466	c.98G>A	c.(97-99)TGG>TAG	p.W33*	BBOX1_uc009yih.1_Nonsense_Mutation_p.W33*|BBOX1_uc001mrg.1_Nonsense_Mutation_p.W33*	NM_003986	NP_003977	O75936	BODG_HUMAN	gamma-butyrobetaine dioxygenase	33					carnitine biosynthetic process	actin cytoskeleton|cytosol|intracellular membrane-bounded organelle	gamma-butyrobetaine dioxygenase activity|iron ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|zinc ion binding			ovary(1)	1					Succinic acid(DB00139)|Vitamin C(DB00126)	CCAGCTGTATGGTTGAGAGAC	0.473													17	47					0	0	1	0	0
KCNA4	3739	broad.mit.edu	37	11	30032768	30032768	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:30032768G>A	uc001msk.2	-	2	2610	c.1458C>T	c.(1456-1458)TTC>TTT	p.F486F		NM_002233	NP_002224	P22459	KCNA4_HUMAN	potassium voltage-gated channel, shaker-related	486	Helical; Name=Segment S5; (Potential).					voltage-gated potassium channel complex	potassium ion binding|protein binding|voltage-gated potassium channel activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						TGACCCCAATGAAGAGGAAGA	0.527													26	77					0	0	1	0	0
LMO2	4005	broad.mit.edu	37	11	33886334	33886334	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:33886334G>A	uc001mve.2	-	2	510	c.71C>T	c.(70-72)CCC>CTC	p.P24L	LMO2_uc001mvc.2_Missense_Mutation_p.P17L|LMO2_uc001mvd.2_Missense_Mutation_p.P17L|LMO2_uc010rel.1_Missense_Mutation_p.P24L|LMO2_uc010rem.1_Missense_Mutation_p.P93L	NM_001142316	NP_001135788	P25791	RBTN2_HUMAN	LIM domain only 2 isoform 2	24					multicellular organismal development	nucleus	protein binding|zinc ion binding			lung(1)	1						CAGGGATGGGGGGATCTGCAG	0.612			T	TRD@	T-ALL								15	51					0	0	1	0	0
CAPRIN1	4076	broad.mit.edu	37	11	34113478	34113478	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:34113478C>T	uc001mvh.1	+	15	1769	c.1580C>T	c.(1579-1581)CCT>CTT	p.P527L	CAPRIN1_uc001mvg.2_Missense_Mutation_p.P527L|CAPRIN1_uc001mvi.2_Missense_Mutation_p.P527L|CAPRIN1_uc001mvj.1_Missense_Mutation_p.P446L	NM_005898	NP_005889	Q14444	CAPR1_HUMAN	membrane component chromosome 11 surface marker	527					negative regulation of translation|positive regulation of dendrite morphogenesis|positive regulation of dendritic spine morphogenesis	cytoplasmic mRNA processing body|cytosol|dendrite|integral to plasma membrane|stress granule	protein binding|RNA binding			ovary(1)	1		Acute lymphoblastic leukemia(5;0.00045)|all_hematologic(20;0.0016)				GCCCCAGTTCCTCCTGTTAAT	0.378													29	27					0	0	1	0	0
NAT10	55226	broad.mit.edu	37	11	34152965	34152965	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:34152965C>T	uc001mvk.2	+	14	1651	c.1407C>T	c.(1405-1407)ATC>ATT	p.I469I	NAT10_uc010ren.1_Silent_p.I397I	NM_024662	NP_078938	Q9H0A0	NAT10_HUMAN	N-acetyltransferase 10 isoform a	469						nucleolus	ATP binding|N-acetyltransferase activity|protein binding			ovary(1)|skin(1)	2		Acute lymphoblastic leukemia(5;0.0119)|all_hematologic(20;0.0231)				AGGAGTCAATCCGATACGCCC	0.493													47	66					0	0	1	0	0
PAMR1	25891	broad.mit.edu	37	11	35461197	35461197	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:35461197G>A	uc001mwg.2	-	8	1121	c.1078C>T	c.(1078-1080)CTT>TTT	p.L360F	PAMR1_uc001mwf.2_Missense_Mutation_p.L377F|PAMR1_uc010rew.1_Missense_Mutation_p.L249F|PAMR1_uc010rex.1_Missense_Mutation_p.L320F	NM_001001991	NP_001001991	Q6UXH9	PAMR1_HUMAN	regeneration associated muscle protease isoform	360					proteolysis	extracellular region	serine-type endopeptidase activity			ovary(2)	2						TGCATCGGAAGAACTCTCCTT	0.453													35	117					0	0	1	0	0
RAG1	5896	broad.mit.edu	37	11	36595854	36595854	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:36595854C>T	uc001mwu.3	+	2	1124	c.1000C>T	c.(1000-1002)CCA>TCA	p.P334S	RAG1_uc001mwt.2_RNA	NM_000448	NP_000439	P15918	RAG1_HUMAN	recombination activating gene 1	334					histone monoubiquitination|immune response|pre-B cell allelic exclusion|protein autoubiquitination|T cell differentiation in thymus|V(D)J recombination	nucleus	endonuclease activity|histone binding|protein homodimerization activity|sequence-specific DNA binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|pancreas(1)|lung(1)|kidney(1)|skin(1)	5	all_lung(20;0.226)	all_hematologic(20;0.107)				TTGCCGATATCCATGCTTCCC	0.507									Familial_Hemophagocytic_Lymphohistiocytosis				34	26					0	0	1	0	0
RAG2	5897	broad.mit.edu	37	11	36614599	36614599	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:36614599C>T	uc001mwv.3	-	2	1308	c.1120G>A	c.(1120-1122)GAT>AAT	p.D374N	RAG1_uc001mwt.2_RNA|C11orf74_uc010rfd.1_5'Flank|C11orf74_uc001mww.1_5'Flank|C11orf74_uc001mwx.1_5'Flank|C11orf74_uc001mwy.1_5'Flank|C11orf74_uc001mwz.1_5'Flank|C11orf74_uc010rfe.1_5'Flank	NM_000536	NP_000527	P55895	RAG2_HUMAN	recombination activating gene 2	374					chromatin modification|pre-B cell allelic exclusion|somatic diversification of immunoglobulins|T cell differentiation in thymus|V(D)J recombination	nucleus	chromatin binding|DNA binding|endonuclease activity|methylated histone residue binding|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|phosphatidylinositol-3,5-bisphosphate binding|phosphatidylinositol-4,5-bisphosphate binding|zinc ion binding			skin(3)|ovary(1)|pancreas(1)	5	all_lung(20;0.226)	all_hematologic(20;0.00756)				GGAGTGGAATCCCCTGGATCT	0.358									Familial_Hemophagocytic_Lymphohistiocytosis				33	79					0	0	1	0	0
TSPAN18	90139	broad.mit.edu	37	11	44941529	44941529	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:44941529G>A	uc001mye.3	+	6	755	c.594G>A	c.(592-594)AGG>AGA	p.R198R	TP53I11_uc001myf.1_Intron|TSPAN18_uc001myg.2_Silent_p.R198R	NM_130783	NP_570139	Q96SJ8	TSN18_HUMAN	tetraspanin 18 isoform 2	198	Extracellular (Potential).					integral to membrane					0						TCCTGGGAAGGAGCCTATTCC	0.632													38	66					0	0	1	0	0
AMBRA1	55626	broad.mit.edu	37	11	46568713	46568713	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:46568713G>A	uc010rgu.1	-	4	688	c.328C>T	c.(328-330)CTT>TTT	p.L110F	AMBRA1_uc009ylc.1_Missense_Mutation_p.L110F|AMBRA1_uc001ncu.1_Missense_Mutation_p.L110F|AMBRA1_uc001ncv.2_Missense_Mutation_p.L110F|AMBRA1_uc001ncw.2_Missense_Mutation_p.L110F|AMBRA1_uc001ncx.2_Missense_Mutation_p.L110F	NM_017749	NP_060219	Q9C0C7	AMRA1_HUMAN	activating molecule in beclin-1-regulated	110	WD 2.				autophagy|cell differentiation|nervous system development	autophagic vacuole|cytoplasmic vesicle				large_intestine(1)|ovary(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(35;0.0435)|Lung(87;0.182)		GAAGCAATAAGGCCTGAGATG	0.433													39	83					0	0	1	0	0
ARHGAP1	392	broad.mit.edu	37	11	46703605	46703605	+	Missense_Mutation	SNP	G	C	C	rs138044269		TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:46703605G>C	uc001ndd.2	-	5	514	c.445C>G	c.(445-447)CGC>GGC	p.R149G		NM_004308	NP_004299	Q07960	RHG01_HUMAN	Rho GTPase activating protein 1	149	CRAL-TRIO.				Rho protein signal transduction	cytosol|intracellular membrane-bounded organelle	SH3 domain binding|SH3/SH2 adaptor activity			skin(1)	1		Lung NSC(402;1.76e-12)|all_lung(304;1.3e-11)		GBM - Glioblastoma multiforme(35;5.17e-06)|BRCA - Breast invasive adenocarcinoma(625;0.00112)|Lung(87;0.153)		ACCCACTTGCGGTCAAACTCC	0.617													43	47					0	0	1	0	0
AGBL2	79841	broad.mit.edu	37	11	47701578	47701578	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:47701578C>T	uc001ngg.2	-	12	2063	c.1963G>A	c.(1963-1965)GGT>AGT	p.G655S	AGBL2_uc001ngf.2_RNA|AGBL2_uc010rhq.1_Missense_Mutation_p.G617S|AGBL2_uc001ngh.1_Missense_Mutation_p.G599S	NM_024783	NP_079059	Q5U5Z8	CBPC2_HUMAN	carboxypeptidase 2, cytosolic	655					proteolysis	cytosol	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2						ACATGATAACCTAAGGACTTC	0.343													12	43					0	0	1	0	0
FNBP4	23360	broad.mit.edu	37	11	47755678	47755678	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:47755678G>A	uc009ylv.2	-	10	1738	c.1585C>T	c.(1585-1587)CAG>TAG	p.Q529*	FNBP4_uc001ngj.2_Nonsense_Mutation_p.Q436*|FNBP4_uc001ngl.2_Intron	NM_015308	NP_056123	Q8N3X1	FNBP4_HUMAN	formin binding protein 4	529										ovary(1)	1						TCTCCAATCTGAAACTACAAT	0.318													13	18					0	0	1	0	0
PTPRJ	5795	broad.mit.edu	37	11	48145287	48145287	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:48145287G>A	uc001ngp.3	+	5	1094	c.739G>A	c.(739-741)GAG>AAG	p.E247K	PTPRJ_uc001ngo.3_Missense_Mutation_p.E247K	NM_002843	NP_002834	Q12913	PTPRJ_HUMAN	protein tyrosine phosphatase, receptor type, J	247	Extracellular (Potential).|Fibronectin type-III 2.				contact inhibition|negative regulation of cell growth|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of MAP kinase activity|negative regulation of platelet-derived growth factor receptor signaling pathway|negative regulation of protein kinase B signaling cascade|negative regulation of T cell receptor signaling pathway|negative regulation of vascular permeability|platelet-derived growth factor receptor signaling pathway|positive chemotaxis|positive regulation of focal adhesion assembly|positive regulation of protein kinase B signaling cascade|positive regulation of survival gene product expression	cell surface|cell-cell junction|immunological synapse|integral to plasma membrane|ruffle membrane	beta-catenin binding|delta-catenin binding|gamma-catenin binding|mitogen-activated protein kinase binding|platelet-derived growth factor receptor binding|protein tyrosine phosphatase activity			breast(3)|kidney(3)|ovary(1)|skin(1)	8						TGGAAGCCATGAGGAGTTGAC	0.512													25	34					0	0	1	0	0
OR4B1	119765	broad.mit.edu	37	11	48238966	48238966	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:48238966G>A	uc010rhs.1	+	1	605	c.605G>A	c.(604-606)GGA>GAA	p.G202E		NM_001005470	NP_001005470	Q8NGF8	OR4B1_HUMAN	olfactory receptor, family 4, subfamily B,	202	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)|pancreas(1)	4						GCCAACAGTGGATTATTCTCT	0.478													32	55					0	0	1	0	0
OR4S1	256148	broad.mit.edu	37	11	48328650	48328650	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:48328650G>A	uc010rhu.1	+	1	876	c.876G>A	c.(874-876)GTG>GTA	p.V292V		NM_001004725	NP_001004725	Q8NGB4	OR4S1_HUMAN	olfactory receptor, family 4, subfamily S,	292	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						ACAACGATGTGAAAAATGCCA	0.453													31	50					0	0	1	0	0
OR4C3	256144	broad.mit.edu	37	11	48346606	48346606	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:48346606C>T	uc010rhv.1	+	1	114	c.114C>T	c.(112-114)TTC>TTT	p.F38F		NM_001004702	NP_001004702	Q8NH37	OR4C3_HUMAN	olfactory receptor, family 4, subfamily C,	11	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						CAGAATTTTTCATGCTGGGGC	0.418													33	77					0	0	1	0	0
OR4A47	403253	broad.mit.edu	37	11	48510793	48510793	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:48510793G>A	uc010rhx.1	+	1	449	c.449G>A	c.(448-450)GGA>GAA	p.G150E		NM_001005512	NP_001005512	Q6IF82	O4A47_HUMAN	olfactory receptor, family 4, subfamily A,	150	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						TGGGTTGGAGGATTTCTGCAC	0.438													34	69					0	0	1	0	0
FOLH1	2346	broad.mit.edu	37	11	49208241	49208241	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:49208241C>T	uc001ngy.2	-	5	855	c.594G>A	c.(592-594)GGG>GGA	p.G198G	FOLH1_uc001ngz.2_Silent_p.G198G|FOLH1_uc009yly.2_Silent_p.G183G|FOLH1_uc009ylz.2_Silent_p.G183G|FOLH1_uc009yma.2_5'UTR	NM_004476	NP_004467	Q04609	FOLH1_HUMAN	folate hydrolase 1 isoform 1	198	Extracellular (Probable).				proteolysis	cytoplasm|integral to plasma membrane|membrane fraction|nucleus	carboxypeptidase activity|dipeptidase activity|metal ion binding|metallopeptidase activity			large_intestine(1)|ovary(1)|skin(1)	3					Capromab(DB00089)|L-Glutamic Acid(DB00142)	TTACAATTTTCCCAGAGCAAT	0.368													8	88					0	0	1	0	0
OR4A5	81318	broad.mit.edu	37	11	51412003	51412003	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:51412003C>T	uc001nhi.1	-	1	393	c.393G>A	c.(391-393)TTG>TTA	p.L131L		NM_001005272	NP_001005272	Q8NH83	OR4A5_HUMAN	olfactory receptor, family 4, subfamily A,	131	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3		all_lung(304;0.236)				TCATGATGGTCAAATAGTGCA	0.463													30	41					0	0	1	0	0
OR4C46	119749	broad.mit.edu	37	11	51515925	51515925	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:51515925C>T	uc010ric.1	+	1	644	c.644C>T	c.(643-645)TCC>TTC	p.S215F		NM_001004703	NP_001004703	A6NHA9	O4C46_HUMAN	olfactory receptor, family 4, subfamily C,	215	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						CTGCTGGTCTCCTATGTGGTC	0.507													26	47					0	0	1	0	0
Unknown	0	broad.mit.edu	37	11	55063106	55063106	+	RNA	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:55063106G>A	uc001nhl.1	-	3		c.529C>T								Homo sapiens mRNA for hypothetical protein, partial sequence, clone:Hsa11-digit20-11-30-F.																		TCTTCATGGAGAAATGCAGGC	0.388													6	11					0	0	1	0	0
OR5F1	338674	broad.mit.edu	37	11	55761808	55761808	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:55761808G>A	uc010riv.1	-	1	294	c.294C>T	c.(292-294)TTC>TTT	p.F98F		NM_003697	NP_003688	O95221	OR5F1_HUMAN	olfactory receptor, family 5, subfamily F,	98	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)	2	Esophageal squamous(21;0.00448)					ACATCTGTAGGAAGCAGCCAG	0.468													29	51					0	0	1	0	0
OR8H2	390151	broad.mit.edu	37	11	55873406	55873406	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:55873406G>A	uc010riy.1	+	1	888	c.888G>A	c.(886-888)GAG>GAA	p.E296E		NM_001005200	NP_001005200	Q8N162	OR8H2_HUMAN	olfactory receptor, family 8, subfamily H,	296	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	Esophageal squamous(21;0.00693)					GAAACAAAGAGGTGAAAAATG	0.368										HNSCC(53;0.14)			34	76					0	0	1	0	0
OR8K5	219453	broad.mit.edu	37	11	55927701	55927701	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:55927701G>A	uc010rja.1	-	1	93	c.93C>T	c.(91-93)TTC>TTT	p.F31F		NM_001004058	NP_001004058	Q8NH50	OR8K5_HUMAN	olfactory receptor, family 8, subfamily K,	31	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|skin(1)	4	Esophageal squamous(21;0.00693)	Lung NSC(402;0.197)|all_epithelial(135;0.236)				AGATGACGAGGAAGACTCCAA	0.443													29	52					0	0	1	0	0
OR5T2	219464	broad.mit.edu	37	11	55999821	55999821	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:55999821C>T	uc010rjc.1	-	1	841	c.841G>A	c.(841-843)GGA>AGA	p.G281R		NM_001004746	NP_001004746	Q8NGG2	OR5T2_HUMAN	olfactory receptor, family 5, subfamily T,	281	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00448)					AGGTGAGCTCCACATGTGGAG	0.438													47	75					0	0	1	0	0
OR8J1	219477	broad.mit.edu	37	11	56128023	56128023	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:56128023C>T	uc010rjh.1	+	1	301	c.301C>T	c.(301-303)CTG>TTG	p.L101L		NM_001005205	NP_001005205	Q8NGP2	OR8J1_HUMAN	olfactory receptor, family 8, subfamily J,	101	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00448)					TGCCACCCAACTGGGAGGGTT	0.408													21	89					0	0	1	0	0
OR5M3	219482	broad.mit.edu	37	11	56237759	56237759	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:56237759G>A	uc010rjk.1	-	1	215	c.215C>T	c.(214-216)TCT>TTT	p.S72F		NM_001004742	NP_001004742	Q8NGP4	OR5M3_HUMAN	olfactory receptor, family 5, subfamily M,	72	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00448)					GACATTGGAAGAAAACCACAC	0.378													26	42					0	0	1	0	0
OR5M3	219482	broad.mit.edu	37	11	56237851	56237851	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:56237851G>A	uc010rjk.1	-	1	123	c.123C>T	c.(121-123)ATC>ATT	p.I41I		NM_001004742	NP_001004742	Q8NGP4	OR5M3_HUMAN	olfactory receptor, family 5, subfamily M,	41	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00448)					CCATCATGCCGATATTGCCCA	0.438													18	40					0	0	1	0	0
OR9G9	504191	broad.mit.edu	37	11	56467982	56467982	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:56467982G>A	uc010rjn.1	+	1	119	c.119G>A	c.(118-120)GGA>GAA	p.G40E		NM_001013358	NP_001013376	P0C7N8	OR9G9_HUMAN	olfactory receptor, family 9, subfamily G,	40	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						ACTGTGGTAGGAAATAGCACC	0.493													12	91					0	0	1	0	0
TNKS1BP1	85456	broad.mit.edu	37	11	57081173	57081173	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:57081173G>A	uc001njr.2	-	4	1301	c.989C>T	c.(988-990)CCC>CTC	p.P330L	TNKS1BP1_uc001njs.2_Missense_Mutation_p.P330L|TNKS1BP1_uc009ymd.1_5'UTR	NM_033396	NP_203754	Q9C0C2	TB182_HUMAN	tankyrase 1-binding protein 1	330	Pro-rich.|Acidic.				nuclear-transcribed mRNA poly(A) tail shortening|telomere maintenance via telomerase	cytoskeleton|cytosol|nuclear telomeric heterochromatin	ankyrin binding|enzyme binding			skin(1)	1		all_epithelial(135;0.21)				AGCGGGGCAGGGAGAAGCCTG	0.662													6	9					0	0	1	0	0
SERPING1	710	broad.mit.edu	37	11	57373619	57373619	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:57373619C>T	uc001nkp.1	+	5	1013	c.822C>T	c.(820-822)ATC>ATT	p.I274I	SERPING1_uc001nkq.1_Silent_p.I274I|SERPING1_uc010rju.1_Silent_p.I222I|SERPING1_uc010rjv.1_Silent_p.I279I|SERPING1_uc001nkr.1_Silent_p.I274I|SERPING1_uc009ymi.1_Silent_p.I274I|SERPING1_uc009ymj.1_Silent_p.I274I|SERPING1_uc001nks.1_5'UTR	NM_000062	NP_000053	P05155	IC1_HUMAN	serpin peptidase inhibitor, clade G, member 1	274					blood circulation|blood coagulation, intrinsic pathway|complement activation, classical pathway|innate immune response|negative regulation of complement activation, lectin pathway|platelet activation|platelet degranulation	extracellular space|platelet alpha granule lumen	protein binding|serine-type endopeptidase inhibitor activity			central_nervous_system(1)	1						ACAACAAGATCAGCCGGCTGC	0.552									Hereditary_Angioedema				59	109					0	0	1	0	0
OR9Q2	219957	broad.mit.edu	37	11	57958097	57958097	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:57958097G>A	uc010rka.1	+	1	135	c.135G>A	c.(133-135)ATG>ATA	p.M45I		NM_001005283	NP_001005283	Q8NGE9	OR9Q2_HUMAN	olfactory receptor, family 9, subfamily Q,	45	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|breast(1)|central_nervous_system(1)	4		Breast(21;0.0589)				ACACAGGCATGATCCTCCTGA	0.502													8	31					0	0	1	0	0
OR10Q1	219960	broad.mit.edu	37	11	57995988	57995988	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:57995988C>T	uc010rkd.1	-	1	360	c.360G>A	c.(358-360)GCG>GCA	p.A120A		NM_001004471	NP_001004471	Q8NGQ4	O10Q1_HUMAN	olfactory receptor, family 10, subfamily Q,	120	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2		Breast(21;0.0589)				AGGCCATGATCGCCAAGAGGA	0.592													21	24					0	0	1	0	0
OR5B17	219965	broad.mit.edu	37	11	58126513	58126513	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:58126513G>A	uc010rke.1	-	1	30	c.30C>T	c.(28-30)TTC>TTT	p.F10F		NM_001005489	NP_001005489	Q8NGF7	OR5BH_HUMAN	olfactory receptor, family 5, subfamily B,	10	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				CAAGCAGGATGAATTCACTCA	0.418													52	72					0	0	1	0	0
GLYATL2	219970	broad.mit.edu	37	11	58604614	58604614	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:58604614A>G	uc001nnd.3	-	5	481	c.350T>C	c.(349-351)GTT>GCT	p.V117A	GLYATL2_uc009ymq.2_Missense_Mutation_p.V117A	NM_145016	NP_659453	Q8WU03	GLYL2_HUMAN	glycine-N-acyltransferase-like 2	117						mitochondrion	glycine N-acyltransferase activity			ovary(1)|skin(1)	2		Breast(21;0.0044)|all_epithelial(135;0.0216)			Glycine(DB00145)	TGAAGTTGCAACCTTTCTTAT	0.413													28	48					0	0	1	0	0
OR10V1	390201	broad.mit.edu	37	11	59480687	59480687	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:59480687G>A	uc001nof.1	-	1	632	c.632C>T	c.(631-633)CCC>CTC	p.P211L		NM_001005324	NP_001005324	Q8NGI7	O10V1_HUMAN	olfactory receptor, family 10, subfamily V,	211	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CAATGAGAGGGGGATGCTAAG	0.517													21	53					0	0	1	0	0
MS4A2	2206	broad.mit.edu	37	11	59857197	59857198	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:59857197_59857198CC>TT	uc001nop.2	+	2	191_192	c.89_90CC>TT	c.(88-90)CCC>CTT	p.P30L	MS4A2_uc009ymu.2_Missense_Mutation_p.P30L	NM_000139	NP_000130	Q01362	FCERB_HUMAN	membrane-spanning 4-domains, subfamily A, member	30	Cytoplasmic (Potential).				cell proliferation|humoral immune response	integral to plasma membrane	calcium channel activity			ovary(1)	1		all_epithelial(135;0.245)			Omalizumab(DB00043)	GAAATATCTCCCCAGGAAGTAT	0.45													28	51					0	0	1	0	0
MS4A6A	64231	broad.mit.edu	37	11	59949187	59949187	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:59949187G>A	uc001nor.2	-	2	252	c.14C>T	c.(13-15)CCT>CTT	p.P5L	MS4A6A_uc001noq.2_Missense_Mutation_p.P5L|MS4A6A_uc001nos.3_Missense_Mutation_p.P33L|MS4A6A_uc009ymv.2_Missense_Mutation_p.P5L|MS4A6A_uc001not.2_Missense_Mutation_p.P5L|MS4A6A_uc010rla.1_Missense_Mutation_p.P33L|MS4A6A_uc010rlb.1_Missense_Mutation_p.P5L	NM_152852	NP_690591	Q9H2W1	M4A6A_HUMAN	membrane-spanning 4-domains, subfamily A, member	5	Cytoplasmic (Potential).					integral to membrane	receptor activity				0						ATTGGGAACAGGTTGTGATGT	0.443													45	65					0	0	1	0	0
MS4A6E	245802	broad.mit.edu	37	11	60105270	60105270	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:60105270C>T	uc001npd.2	+	2	218	c.204C>T	c.(202-204)TTC>TTT	p.F68F		NM_139249	NP_640342	Q96DS6	M4A6E_HUMAN	membrane-spanning 4-domains, subfamily A, member	68	Helical; (Potential).					integral to membrane	receptor activity				0						TGGTGGGTTTCATTCTCCTGT	0.483													42	89					0	0	1	0	0
MS4A10	341116	broad.mit.edu	37	11	60561513	60561513	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:60561513C>T	uc001npz.1	+	5	525	c.429C>T	c.(427-429)TCC>TCT	p.S143S		NM_206893	NP_996776	Q96PG2	M4A10_HUMAN	membrane-spanning 4-domains, subfamily A, member	143	Extracellular (Potential).					integral to membrane	receptor activity			ovary(1)|skin(1)	2						TCGTCATCTCCAAGGATCTCT	0.517													38	84					0	0	1	0	0
ZP1	22917	broad.mit.edu	37	11	60637362	60637362	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:60637362G>A	uc001nqd.2	+	3	691	c.671G>A	c.(670-672)CGA>CAA	p.R224Q	ZP1_uc001nqe.2_5'Flank	NM_207341	NP_997224	P60852	ZP1_HUMAN	zona pellucida glycoprotein 1 precursor	224	Extracellular (Potential).				single fertilization	integral to membrane|plasma membrane|proteinaceous extracellular matrix					0						GTGAACAAACGAGATTACATA	0.562													17	36					0	0	1	0	0
CD6	923	broad.mit.edu	37	11	60781027	60781027	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:60781027G>A	uc001nqq.2	+	7	1506	c.1283G>A	c.(1282-1284)GGA>GAA	p.G428E	CD6_uc009yni.2_Missense_Mutation_p.G327E|CD6_uc009ynj.2_Missense_Mutation_p.G305E|CD6_uc001nqp.2_Missense_Mutation_p.G428E|CD6_uc001nqr.2_Missense_Mutation_p.G428E|CD6_uc001nqs.2_RNA|CD6_uc001nqt.2_Missense_Mutation_p.G428E	NM_006725	NP_006716	P30203	CD6_HUMAN	CD6 molecule precursor	428	Cytoplasmic (Potential).				cell adhesion	cell surface|integral to plasma membrane	scavenger receptor activity			pancreas(1)	1						AGAATTAAAGGAAAATATGGT	0.532													64	113					0	0	1	0	0
DAK	26007	broad.mit.edu	37	11	61113347	61113347	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:61113347G>A	uc001nre.2	+	17	1761	c.1504G>A	c.(1504-1506)GCG>ACG	p.A502T	DAK_uc009ynm.1_Missense_Mutation_p.A432T	NM_015533	NP_056348	Q3LXA3	DHAK_HUMAN	dihydroxyacetone kinase 2	502	DhaL.				glycerol metabolic process	cytosol	ATP binding|FAD-AMP lyase (cyclizing) activity|glycerone kinase activity|metal ion binding				0						TCTGTGGGCAGCGGGGCAGGA	0.592													35	73					0	0	1	0	0
RAB3IL1	5866	broad.mit.edu	37	11	61672311	61672311	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:61672311G>A	uc001nso.2	-	6	859	c.701C>T	c.(700-702)TCC>TTC	p.S234F	RAB3IL1_uc001nsp.2_Missense_Mutation_p.S208F	NM_013401	NP_037533	Q8TBN0	R3GEF_HUMAN	RAB3A interacting protein (rabin3)-like 1	234							protein binding			skin(2)|central_nervous_system(1)	3						CAGGGTGGGGGATTCCCTCCA	0.632													21	40					0	0	1	0	0
INCENP	3619	broad.mit.edu	37	11	61897355	61897355	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:61897355C>T	uc001nsw.1	+	4	558	c.356C>T	c.(355-357)TCC>TTC	p.S119F	INCENP_uc009ynv.2_Missense_Mutation_p.S119F|INCENP_uc009ynw.1_Missense_Mutation_p.S119F|INCENP_uc001nsx.1_Missense_Mutation_p.S119F	NM_001040694	NP_001035784	Q9NQS7	INCE_HUMAN	inner centromere protein antigens 135/155kDa	119					chromosome segregation|cytokinesis|mitotic prometaphase	centromeric heterochromatin|condensed chromosome kinetochore|cytosol|microtubule|spindle	protein binding			lung(1)	1						GAGAACGGCTCCGTCCTGCGG	0.642													23	39					0	0	1	0	0
NRXN2	9379	broad.mit.edu	37	11	64416264	64416264	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:64416264G>A	uc001oar.2	-	17	3664	c.3225C>T	c.(3223-3225)CTC>CTT	p.L1075L	NRXN2_uc001oas.2_Silent_p.L1035L|NRXN2_uc001oaq.2_Silent_p.L742L	NM_015080	NP_055895	P58401	NRX2B_HUMAN	neurexin 2 isoform alpha-1 precursor	Error:Variant_position_missing_in_P58401_after_alignment					cell adhesion	integral to membrane				upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)|ovary(2)|kidney(1)|pancreas(1)	10						TGAGGTCTGGGAGACGTCCGT	0.632													44	51					0	0	1	0	0
LRP5	4041	broad.mit.edu	37	11	68125190	68125190	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:68125190G>A	uc001ont.2	+	3	636	c.561G>A	c.(559-561)AAG>AAA	p.K187K	LRP5_uc009ysg.2_5'UTR	NM_002335	NP_002326	O75197	LRP5_HUMAN	low density lipoprotein receptor-related protein	187	Beta-propeller 1.|LDL-receptor class B 3.|Extracellular (Potential).				adipose tissue development|bone marrow development|bone morphogenesis|canonical Wnt receptor signaling pathway|cholesterol homeostasis|endocytosis|glucose catabolic process|negative regulation of osteoblast differentiation|negative regulation of protein serine/threonine kinase activity|positive regulation of fat cell differentiation|positive regulation of mesenchymal cell proliferation|positive regulation of mitosis|positive regulation of transcription from RNA polymerase II promoter|regulation of blood pressure|regulation of canonical Wnt receptor signaling pathway|retina morphogenesis in camera-type eye|retinal blood vessel morphogenesis|Wnt receptor signaling pathway involved in dorsal/ventral axis specification	endoplasmic reticulum|integral to membrane|plasma membrane|receptor complex	protein binding|receptor activity			lung(2)|skin(2)|ovary(1)|pancreas(1)|breast(1)	7						GCACCCGGAAGATCATTGTGG	0.592													11	26					0	0	1	0	0
LRP5	4041	broad.mit.edu	37	11	68181317	68181317	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:68181317C>T	uc001ont.2	+	12	2739	c.2664C>T	c.(2662-2664)TTC>TTT	p.F888F	LRP5_uc009ysg.2_Silent_p.F298F	NM_002335	NP_002326	O75197	LRP5_HUMAN	low density lipoprotein receptor-related protein	888	Beta-propeller 3.|LDL-receptor class B 15.|Extracellular (Potential).				adipose tissue development|bone marrow development|bone morphogenesis|canonical Wnt receptor signaling pathway|cholesterol homeostasis|endocytosis|glucose catabolic process|negative regulation of osteoblast differentiation|negative regulation of protein serine/threonine kinase activity|positive regulation of fat cell differentiation|positive regulation of mesenchymal cell proliferation|positive regulation of mitosis|positive regulation of transcription from RNA polymerase II promoter|regulation of blood pressure|regulation of canonical Wnt receptor signaling pathway|retina morphogenesis in camera-type eye|retinal blood vessel morphogenesis|Wnt receptor signaling pathway involved in dorsal/ventral axis specification	endoplasmic reticulum|integral to membrane|plasma membrane|receptor complex	protein binding|receptor activity			lung(2)|skin(2)|ovary(1)|pancreas(1)|breast(1)	7						ACCTGGACTTCGTGATGGACA	0.592													23	41					0	0	1	0	0
DNAJB13	374407	broad.mit.edu	37	11	73669387	73669387	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:73669387C>T	uc001ouo.2	+	2	845	c.94C>T	c.(94-96)CAC>TAC	p.H32Y		NM_153614	NP_705842	P59910	DJB13_HUMAN	testis spermatogenesis apoptosis-related protein	32	J.				apoptosis|protein folding|spermatogenesis		heat shock protein binding|unfolded protein binding				0	Breast(11;7.42e-05)					CCTTAAGCACCACCCGTTGAA	0.537													10	52					0	0	1	0	0
SLCO2B1	11309	broad.mit.edu	37	11	74907660	74907661	+	Missense_Mutation	DNP	AC	CT	CT			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:74907660_74907661AC>CT	uc001owb.2	+	10	1922_1923	c.1535_1536AC>CT	c.(1534-1536)TAC>TCT	p.Y512S	SLCO2B1_uc010rrq.1_Missense_Mutation_p.Y257S|SLCO2B1_uc010rrr.1_Missense_Mutation_p.Y368S|SLCO2B1_uc010rrs.1_Missense_Mutation_p.Y396S|SLCO2B1_uc001owc.2_Missense_Mutation_p.Y285S|SLCO2B1_uc001owd.2_Missense_Mutation_p.Y490S	NM_007256	NP_009187	O94956	SO2B1_HUMAN	solute carrier organic anion transporter family,	512	Extracellular (Potential).|Kazal-like.				sodium-independent organic anion transport	integral to membrane	sodium-independent organic anion transmembrane transporter activity			ovary(1)|breast(1)	2					Ergoloid mesylate(DB01049)	CGTGTGGAATACATCACACCCT	0.629													12	53					0	0	1	0	0
MOGAT2	80168	broad.mit.edu	37	11	75438621	75438621	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:75438621C>T	uc010rru.1	+	3	412	c.412C>T	c.(412-414)CAT>TAT	p.H138Y	MOGAT2_uc001oww.1_Missense_Mutation_p.H138Y|MOGAT2_uc010rrv.1_Missense_Mutation_p.H56Y	NM_025098	NP_079374	Q3SYC2	MOGT2_HUMAN	monoacylglycerol O-acyltransferase 2	138					glycerol metabolic process	endoplasmic reticulum membrane|integral to membrane	2-acylglycerol O-acyltransferase activity			ovary(2)	2	Ovarian(111;0.103)					TATCCGCCCCCATCTGATGAT	0.572													54	86					0	0	1	0	0
WNT11	7481	broad.mit.edu	37	11	75902746	75902746	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:75902746G>A	uc001oxe.2	-	4	875	c.752C>T	c.(751-753)CCC>CTC	p.P251L	WNT11_uc001oxf.1_Missense_Mutation_p.P251L	NM_004626	NP_004617	O96014	WNT11_HUMAN	wingless-type MMTV integration site family,	251					adrenal gland development|anterior/posterior pattern formation|artery morphogenesis|axis specification|bone mineralization|cellular response to retinoic acid|cloacal septation|embryonic skeletal system development|endoderm development|lung-associated mesenchyme development|mesonephric duct development|negative regulation of apoptosis|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cartilage development|negative regulation of cell growth|negative regulation of cell migration|negative regulation of transcription, DNA-dependent|neuroendocrine cell differentiation|neuron differentiation|osteoblast differentiation|outflow tract morphogenesis|palate development|positive regulation of cell migration|positive regulation of protein kinase C signaling cascade|positive regulation of stress fiber assembly|positive regulation of transcription, DNA-dependent|positive regulation of transforming growth factor-beta2 production|protein localization at cell surface|protein phosphorylation|tight junction assembly|ureteric bud morphogenesis|ventricular septum morphogenesis|Wnt receptor signaling pathway, calcium modulating pathway	cytoplasm|extracellular space|plasma membrane|proteinaceous extracellular matrix	G-protein-coupled receptor binding|protein kinase activator activity|Ras GTPase activator activity|transcription regulatory region DNA binding			lung(1)|skin(1)	2						GGTGCCCATGGGTCGGTGCAC	0.612													48	93					0	0	1	0	0
RSF1	51773	broad.mit.edu	37	11	77412271	77412271	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:77412271G>A	uc001oyn.2	-	6	2123	c.2003C>T	c.(2002-2004)ACC>ATC	p.T668I	RSF1_uc001oym.2_Missense_Mutation_p.T416I	NM_016578	NP_057662	Q96T23	RSF1_HUMAN	remodeling and spacing factor 1	668					CenH3-containing nucleosome assembly at centromere|negative regulation of DNA binding|negative regulation of transcription, DNA-dependent|nucleosome positioning|positive regulation of transcription, DNA-dependent|positive regulation of viral transcription|transcription initiation, DNA-dependent	RSF complex	histone binding|protein binding|zinc ion binding			ovary(2)|central_nervous_system(2)	4	all_cancers(14;1.54e-17)|all_epithelial(13;4.06e-20)|Ovarian(111;0.152)		Epithelial(5;3e-50)|all cancers(3;6.37e-47)|BRCA - Breast invasive adenocarcinoma(5;9.82e-31)			CTCTTTTAGGGTTTCTAGGTC	0.438													63	85					0	0	1	0	0
GAB2	9846	broad.mit.edu	37	11	77937788	77937788	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:77937788C>T	uc001ozh.2	-	4	930	c.930G>A	c.(928-930)CTG>CTA	p.L310L	GAB2_uc001ozg.2_Silent_p.L272L	NM_080491	NP_536739	Q9UQC2	GAB2_HUMAN	GRB2-associated binding protein 2 isoform a	310					osteoclast differentiation|phosphatidylinositol-mediated signaling|positive regulation of cell proliferation|positive regulation of mast cell degranulation	cytosol|plasma membrane	phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|transmembrane receptor protein tyrosine kinase adaptor activity			ovary(5)|lung(1)	6	all_cancers(14;3.31e-18)|all_epithelial(13;5.3e-21)|Breast(9;5.6e-16)|Ovarian(111;0.152)		OV - Ovarian serous cystadenocarcinoma(8;1.58e-23)			TATTGTCTACCAGGAGGTCCC	0.552													32	49					0	0	1	0	0
DLG2	1740	broad.mit.edu	37	11	83195191	83195191	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:83195191C>T	uc001paj.2	-	17	2262	c.1959G>A	c.(1957-1959)CAG>CAA	p.Q653Q	DLG2_uc001pai.2_Intron|DLG2_uc010rsy.1_Intron|DLG2_uc010rsz.1_Intron|DLG2_uc010rta.1_Intron|DLG2_uc001pak.2_Silent_p.Q758Q|DLG2_uc010rtb.1_Silent_p.Q620Q|DLG2_uc010rsw.1_Intron|DLG2_uc010rsx.1_Intron	NM_001364	NP_001355	Q15700	DLG2_HUMAN	chapsyn-110 isoform 2	653						cell junction|postsynaptic density|postsynaptic membrane	guanylate kinase activity|protein binding|protein binding			ovary(3)|pancreas(2)|skin(1)	6		all_cancers(6;0.00791)|Acute lymphoblastic leukemia(157;4.44e-05)|all_hematologic(158;0.0036)				CACTGGTTTCCTGCTCACTCT	0.403													24	49					0	0	1	0	0
FAT3	120114	broad.mit.edu	37	11	92532423	92532423	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:92532423C>T	uc001pdj.3	+	9	6261	c.6244C>T	c.(6244-6246)CCA>TCA	p.P2082S		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	2082	Extracellular (Potential).|Cadherin 18.				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				TGACAATTCTCCAGTCTTTGT	0.498										TCGA Ovarian(4;0.039)			234	483					0	0	1	0	0
HEPHL1	341208	broad.mit.edu	37	11	93796851	93796851	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:93796851C>T	uc001pep.2	+	3	750	c.593C>T	c.(592-594)TCT>TTT	p.S198F		NM_001098672	NP_001092142	Q6MZM0	HPHL1_HUMAN	hephaestin-like 1 precursor	198	Plastocyanin-like 1.|Extracellular (Potential).				copper ion transport	integral to membrane	copper ion binding|oxidoreductase activity			ovary(3)	3		Acute lymphoblastic leukemia(157;2.34e-05)|all_hematologic(158;0.00824)				GACATCTGCTCTGGGCTAATT	0.512													36	75					0	0	1	0	0
HEPHL1	341208	broad.mit.edu	37	11	93800690	93800690	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:93800690C>T	uc001pep.2	+	5	994	c.837C>T	c.(835-837)TTC>TTT	p.F279F	uc001pen.1_RNA	NM_001098672	NP_001092142	Q6MZM0	HPHL1_HUMAN	hephaestin-like 1 precursor	279	Plastocyanin-like 2.|Extracellular (Potential).				copper ion transport	integral to membrane	copper ion binding|oxidoreductase activity			ovary(3)	3		Acute lymphoblastic leukemia(157;2.34e-05)|all_hematologic(158;0.00824)				TCGGAAACTTCCCGGAGCCTG	0.468													56	88					0	0	1	0	0
HEPHL1	341208	broad.mit.edu	37	11	93837869	93837869	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:93837869G>A	uc001pep.2	+	16	3015	c.2858G>A	c.(2857-2859)CGA>CAA	p.R953Q	uc001pen.1_Intron	NM_001098672	NP_001092142	Q6MZM0	HPHL1_HUMAN	hephaestin-like 1 precursor	953	Extracellular (Potential).|Plastocyanin-like 6.				copper ion transport	integral to membrane	copper ion binding|oxidoreductase activity			ovary(3)	3		Acute lymphoblastic leukemia(157;2.34e-05)|all_hematologic(158;0.00824)				AAAGATCCACGAGATTTTAAG	0.343													58	99					0	0	1	0	0
FOLR4	390243	broad.mit.edu	37	11	94038906	94038906	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:94038906G>A	uc010rud.1	+	1	104	c.104G>A	c.(103-105)AGA>AAA	p.R35K		NM_001080486	NP_001073955	A6ND01	FOLR4_HUMAN	folate receptor 4 (delta) homolog	35						extracellular region	folic acid binding|receptor activity			ovary(1)	1						CACCACAAGAGAGTGCCCAGC	0.572													28	24					0	0	1	0	0
GPR83	10888	broad.mit.edu	37	11	94113448	94113448	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:94113448G>A	uc001pet.2	-	4	1311	c.1139C>T	c.(1138-1140)TCC>TTC	p.S380F		NM_016540	NP_057624	Q9NYM4	GPR83_HUMAN	G protein-coupled receptor 83 precursor	380	Cytoplasmic (Potential).					integral to membrane|plasma membrane	neuropeptide Y receptor activity			central_nervous_system(2)|ovary(1)	3		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.0123)				CACCCTGAAGGAAGGAACTGG	0.562													8	90					0	0	1	0	0
GPR83	10888	broad.mit.edu	37	11	94113686	94113686	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:94113686A>G	uc001pet.2	-	4	1073	c.901T>C	c.(901-903)TTT>CTT	p.F301L		NM_016540	NP_057624	Q9NYM4	GPR83_HUMAN	G protein-coupled receptor 83 precursor	301	Helical; Name=6; (Potential).					integral to membrane|plasma membrane	neuropeptide Y receptor activity			central_nervous_system(2)|ovary(1)	3		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.0123)				CAGAGGGCAAAGAGGACTACC	0.527													25	48					0	0	1	0	0
MMP13	4322	broad.mit.edu	37	11	102819814	102819814	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:102819814G>A	uc001phl.2	-	7	1019	c.991C>T	c.(991-993)CCC>TCC	p.P331S		NM_002427	NP_002418	P45452	MMP13_HUMAN	matrix metalloproteinase 13 preproprotein	331	Hemopexin-like 1.				collagen catabolic process|proteolysis	extracellular space	metalloendopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3		all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)		BRCA - Breast invasive adenocarcinoma(274;0.0144)		ATACGGTTGGGAAGTTCTGGC	0.463													30	16					0	0	1	0	0
GUCY1A2	2977	broad.mit.edu	37	11	106681137	106681137	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:106681137G>A	uc001pjg.1	-	5	1664	c.1274C>T	c.(1273-1275)CCA>CTA	p.P425L	GUCY1A2_uc010rvo.1_Missense_Mutation_p.P446L|GUCY1A2_uc009yxn.1_Missense_Mutation_p.P425L	NM_000855	NP_000846	P33402	GCYA2_HUMAN	guanylate cyclase 1, soluble, alpha 2	425					intracellular signal transduction|platelet activation	cytoplasm	GTP binding|guanylate cyclase activity|heme binding			large_intestine(3)|lung(2)|pancreas(2)|ovary(1)	8		all_epithelial(67;3.66e-05)|Melanoma(852;0.000382)|Acute lymphoblastic leukemia(157;0.001)|all_hematologic(158;0.0017)|Breast(348;0.026)|all_neural(303;0.068)		BRCA - Breast invasive adenocarcinoma(274;8.04e-05)|Epithelial(105;0.0036)|all cancers(92;0.0476)		GTCCACACATGGAGAGCCCAA	0.433													29	14					0	0	1	0	0
SIK2	23235	broad.mit.edu	37	11	111591308	111591308	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:111591308C>T	uc001plt.2	+	11	1720	c.1602C>T	c.(1600-1602)TCC>TCT	p.S534S		NM_015191	NP_056006	Q9H0K1	SIK2_HUMAN	SNF1-like kinase 2	534					intracellular protein kinase cascade|regulation of insulin receptor signaling pathway	Golgi apparatus	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			central_nervous_system(2)|skin(1)	3						ACAACCCTTCCCTTAAGGACA	0.517													48	43					0	0	1	0	0
USP28	57646	broad.mit.edu	37	11	113700008	113700008	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:113700008G>A	uc001poh.2	-	10	1003	c.970C>T	c.(970-972)CGC>TGC	p.R324C	USP28_uc001pog.2_Missense_Mutation_p.R32C|USP28_uc010rwy.1_Missense_Mutation_p.R199C|USP28_uc001poi.2_5'UTR|USP28_uc001poj.3_Missense_Mutation_p.R324C	NM_020886	NP_065937	Q96RU2	UBP28_HUMAN	ubiquitin specific protease 28	324					cell proliferation|DNA damage checkpoint|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA repair|protein deubiquitination|response to ionizing radiation|ubiquitin-dependent protein catabolic process	nucleolus|nucleoplasm	protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			lung(2)|breast(2)|ovary(1)|large_intestine(1)|kidney(1)	7		all_cancers(61;3.74e-18)|all_epithelial(67;3.75e-11)|Melanoma(852;1.46e-05)|all_hematologic(158;4.65e-05)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|Prostate(24;0.0153)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;3.93e-06)|Epithelial(105;0.000122)|all cancers(92;0.00104)		TCTAAGTTGCGATAACCGTTT	0.463													31	17					0	0	1	0	0
SIK3	23387	broad.mit.edu	37	11	116729104	116729104	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:116729104G>A	uc001ppy.2	-	20	2795	c.2759C>T	c.(2758-2760)TCG>TTG	p.S920L	SIK3_uc001ppz.2_Missense_Mutation_p.S759L|SIK3_uc001pqa.2_Missense_Mutation_p.S860L|SIK3_uc001ppw.2_Missense_Mutation_p.S277L|SIK3_uc001ppx.2_Missense_Mutation_p.S298L|SIK3_uc001pqb.2_Missense_Mutation_p.S223L	NM_025164	NP_079440	Q9Y2K2	SIK3_HUMAN	serine/threonine-protein kinase QSK	920	Gln-rich.					cytoplasm	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			ovary(4)|breast(3)|stomach(2)|lung(1)|skin(1)|kidney(1)	12						GCCGGTGAGCGAATGCCGGGG	0.473													323	210					0	0	1	0	0
IL10RA	3587	broad.mit.edu	37	11	117864084	117864084	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:117864084G>A	uc001prv.2	+	4	573	c.496G>A	c.(496-498)GAG>AAG	p.E166K	IL10RA_uc010rxl.1_Missense_Mutation_p.E146K|IL10RA_uc010rxm.1_Missense_Mutation_p.E146K|IL10RA_uc010rxn.1_Missense_Mutation_p.E17K|IL10RA_uc001prw.2_Missense_Mutation_p.E17K	NM_001558	NP_001549	Q13651	I10R1_HUMAN	interleukin 10 receptor, alpha precursor	166	Extracellular (Potential).					integral to membrane|plasma membrane	interleukin-10 receptor activity			ovary(1)	1	all_hematologic(175;0.0487)	Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;3.07e-05)|Epithelial(105;0.00108)		TCACTTCCGAGAGTATGAGAT	0.562													15	43					0	0	1	0	0
PHLDB1	23187	broad.mit.edu	37	11	118499023	118499023	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:118499023G>A	uc001ptr.1	+	7	1837	c.1484G>A	c.(1483-1485)TGG>TAG	p.W495*	PHLDB1_uc001pts.2_Nonsense_Mutation_p.W495*|PHLDB1_uc001ptt.2_Nonsense_Mutation_p.W495*|PHLDB1_uc001ptu.1_Intron|PHLDB1_uc001ptv.1_Nonsense_Mutation_p.W295*|PHLDB1_uc001ptw.1_5'Flank	NM_015157	NP_055972	Q86UU1	PHLB1_HUMAN	pleckstrin homology-like domain, family B,	495											0	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0523)|all_hematologic(192;0.0735)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;3.4e-05)		CCCCGGCGCTGGGCAGCCCAT	0.682													16	7					0	0	1	0	0
ARHGEF12	23365	broad.mit.edu	37	11	120336015	120336015	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:120336015C>T	uc001pxl.1	+	28	2690	c.2683C>T	c.(2683-2685)CTG>TTG	p.L895L	ARHGEF12_uc009zat.2_Silent_p.L876L|ARHGEF12_uc010rzn.1_Silent_p.L792L|ARHGEF12_uc009zau.1_Silent_p.L792L	NM_015313	NP_056128	Q9NZN5	ARHGC_HUMAN	Rho guanine nucleotide exchange factor (GEF) 12	895	DH.				apoptosis|axon guidance|G-protein coupled receptor protein signaling pathway|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|membrane	G-protein-coupled receptor binding|GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			lung(2)|breast(2)|skin(2)|ovary(1)	7		Breast(109;0.000813)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.0831)|all_hematologic(192;0.107)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.231)		ACCTTTCGCCCTGGAAATGAT	0.408			T	MLL	AML								29	23					0	0	1	0	0
TECTA	7007	broad.mit.edu	37	11	120976657	120976657	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:120976657C>T	uc010rzo.1	+	2	182	c.182C>T	c.(181-183)CCT>CTT	p.P61L		NM_005422	NP_005413	O75443	TECTA_HUMAN	tectorin alpha precursor	61					cell-matrix adhesion|sensory perception of sound	anchored to membrane|plasma membrane|proteinaceous extracellular matrix				breast(6)|ovary(2)|skin(2)	10	all_hematologic(175;0.208)	Breast(109;0.000766)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.04e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.166)		TTTGGCGTTCCTTACCGCACT	0.428													75	62					0	0	1	0	0
SORL1	6653	broad.mit.edu	37	11	121391473	121391473	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:121391473C>T	uc001pxx.2	+	9	1399	c.1319C>T	c.(1318-1320)TCG>TTG	p.S440L		NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class	440	Extracellular (Potential).				cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		AACATGAGATCGGTCATCACC	0.443													23	14					0	0	1	0	0
SORL1	6653	broad.mit.edu	37	11	121474942	121474942	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:121474942G>T	uc001pxx.2	+	33	4640	c.4560G>T	c.(4558-4560)CAG>CAT	p.Q1520H	SORL1_uc010rzp.1_Missense_Mutation_p.Q366H|SORL1_uc010rzq.1_Missense_Mutation_p.Q135H	NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class	1520	Extracellular (Potential).|LDL-receptor class A 11.				cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		GGGAGTTCCAGTGCGAGGACG	0.602													51	49					5.12918e-33	5.22049e-33	1	1	0
OR10G9	219870	broad.mit.edu	37	11	123894387	123894387	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:123894387C>T	uc010sad.1	+	1	668	c.668C>T	c.(667-669)TCC>TTC	p.S223F		NM_001001953	NP_001001953	Q8NGN4	O10G9_HUMAN	olfactory receptor, family 10, subfamily G,	223	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0399)		ATCGTCTGTTCCATCCTGCGG	0.537													47	24					0	0	1	0	0
OR8B8	26493	broad.mit.edu	37	11	124310956	124310956	+	Missense_Mutation	SNP	A	C	C			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:124310956A>C	uc010sal.1	-	1	26	c.26T>G	c.(25-27)GTG>GGG	p.V9G		NM_012378	NP_036510	Q15620	OR8B8_HUMAN	olfactory receptor, family 8, subfamily B,	9	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0277)		AAACTGTGTCACGAAGGAGGA	0.507													19	18					0	0	1	0	0
ROBO3	64221	broad.mit.edu	37	11	124744069	124744069	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:124744069C>T	uc001qbc.2	+	12	2080	c.1888C>T	c.(1888-1890)CGA>TGA	p.R630*	ROBO3_uc010saq.1_5'Flank|ROBO3_uc001qbd.2_5'Flank|ROBO3_uc010sar.1_5'Flank|ROBO3_uc001qbe.2_5'Flank	NM_022370	NP_071765	Q96MS0	ROBO3_HUMAN	roundabout, axon guidance receptor, homolog 3	630	Fibronectin type-III 1.|Extracellular (Potential).				axon midline choice point recognition	integral to membrane	receptor activity			breast(1)|central_nervous_system(1)	2	all_hematologic(175;0.215)	Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|Breast(109;0.0481)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.5e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0296)		GTTTCTGGTTCGAGCAGTGGG	0.592													36	25					0	0	1	0	0
BARX2	8538	broad.mit.edu	37	11	129306816	129306816	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:129306816G>A	uc001qfc.3	+	2	408	c.358G>A	c.(358-360)GAG>AAG	p.E120K		NM_003658	NP_003649	Q9UMQ3	BARX2_HUMAN	BarH-like homeobox 2	120											0	all_hematologic(175;0.0749)	Lung NSC(97;0.000383)|all_lung(97;0.000824)|Breast(109;0.000962)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.00929)|Lung(977;0.0245)|LUSC - Lung squamous cell carcinoma(976;0.0253)		AGCCAGCAGCGAGTCAGAGAC	0.672													16	14					0	0	1	0	0
ADAMTS8	11095	broad.mit.edu	37	11	130284446	130284447	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:130284446_130284447CC>TT	uc001qgg.3	-	5	1903_1904	c.1545_1546GG>AA	c.(1543-1548)GAGGAG>GAAAAG	p.E516K	ADAMTS8_uc001qgf.2_5'Flank	NM_007037	NP_008968	Q9UP79	ATS8_HUMAN	ADAM metallopeptidase with thrombospondin type 1	516	Disintegrin.				negative regulation of cell proliferation|proteolysis	proteinaceous extracellular matrix	heparin binding|integrin binding|low affinity phosphate transmembrane transporter activity|metalloendopeptidase activity|zinc ion binding			central_nervous_system(1)	1	all_hematologic(175;0.0429)	Lung NSC(97;0.000601)|Breast(109;0.000962)|all_lung(97;0.00125)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.039)|Lung(977;0.213)		TCCACTTCCTCCTCAGGTAGAC	0.629													31	26					0	0	1	0	0
OPCML	4978	broad.mit.edu	37	11	132527115	132527115	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:132527115G>A	uc001qgs.2	-	2	317	c.267C>T	c.(265-267)ATC>ATT	p.I89I	OPCML_uc001qgu.2_Silent_p.I82I|OPCML_uc010sck.1_Silent_p.I89I|OPCML_uc001qgt.2_Silent_p.I89I|OPCML_uc010scl.1_Silent_p.I48I	NM_002545	NP_002536	Q14982	OPCM_HUMAN	opioid binding protein/cell adhesion	89	Ig-like C2-type 1.				cell adhesion|neuron recognition	anchored to membrane|integral to plasma membrane	opioid receptor activity			ovary(2)|skin(1)	3	all_hematologic(175;0.019)	all_cancers(12;5.86e-24)|all_epithelial(12;2.65e-17)|all_lung(97;2.89e-05)|Lung NSC(97;6.16e-05)|Breast(109;0.000126)|Medulloblastoma(222;0.0269)|all_neural(223;0.0326)|Esophageal squamous(93;0.129)		all cancers(11;4.61e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.012)		TGACCAGGATGATCACACGAG	0.522													44	26					0	0	1	0	0
CACNA1C	775	broad.mit.edu	37	12	2705076	2705076	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:2705076G>A	uc009zdu.1	+	20	3013	c.2700G>A	c.(2698-2700)ACG>ACA	p.T900T	CACNA1C_uc009zdv.1_Silent_p.T897T|CACNA1C_uc001qkb.2_Silent_p.T900T|CACNA1C_uc001qkc.2_Silent_p.T900T|CACNA1C_uc001qke.2_Silent_p.T900T|CACNA1C_uc001qkf.2_Silent_p.T900T|CACNA1C_uc001qjz.2_Silent_p.T900T|CACNA1C_uc001qkd.2_Silent_p.T900T|CACNA1C_uc001qkg.2_Silent_p.T900T|CACNA1C_uc009zdw.1_Silent_p.T900T|CACNA1C_uc001qkh.2_Silent_p.T900T|CACNA1C_uc001qkl.2_Silent_p.T900T|CACNA1C_uc001qkn.2_Silent_p.T900T|CACNA1C_uc001qko.2_Silent_p.T900T|CACNA1C_uc001qkp.2_Silent_p.T900T|CACNA1C_uc001qkr.2_Silent_p.T900T|CACNA1C_uc001qku.2_Silent_p.T900T|CACNA1C_uc001qkq.2_Silent_p.T900T|CACNA1C_uc001qks.2_Silent_p.T900T|CACNA1C_uc001qkt.2_Silent_p.T900T|CACNA1C_uc001qka.1_Silent_p.T435T|CACNA1C_uc001qki.1_Silent_p.T636T|CACNA1C_uc001qkj.1_Silent_p.T636T|CACNA1C_uc001qkk.1_Silent_p.T636T|CACNA1C_uc001qkm.1_Silent_p.T636T|CACNA1C_uc001qkw.2_Silent_p.T189T	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	900	III.|Cytoplasmic (Potential).				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	TCAATGACACGATCTTCACCA	0.562													14	63					0	0	1	0	0
CACNA1C	775	broad.mit.edu	37	12	2794989	2794989	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:2794989C>T	uc009zdu.1	+	47	6223	c.5910C>T	c.(5908-5910)TTC>TTT	p.F1970F	CACNA1C_uc009zdv.1_Silent_p.F1884F|CACNA1C_uc001qkb.2_Silent_p.F1887F|CACNA1C_uc001qkc.2_Silent_p.F1906F|CACNA1C_uc001qke.2_Silent_p.F1876F|CACNA1C_uc001qkf.2_Silent_p.F1895F|CACNA1C_uc001qjz.2_Silent_p.F1887F|CACNA1C_uc001qkd.2_Silent_p.F1906F|CACNA1C_uc001qkg.2_Silent_p.F1893F|CACNA1C_uc009zdw.1_Silent_p.F1928F|CACNA1C_uc001qkh.2_Silent_p.F1895F|CACNA1C_uc001qkl.2_Silent_p.F1935F|CACNA1C_uc001qkn.2_Silent_p.F1887F|CACNA1C_uc001qko.2_Silent_p.F1907F|CACNA1C_uc001qkp.2_Silent_p.F1887F|CACNA1C_uc001qkr.2_Silent_p.F1904F|CACNA1C_uc001qku.2_Silent_p.F1922F|CACNA1C_uc001qkq.2_Silent_p.F1915F|CACNA1C_uc001qks.2_Silent_p.F1887F|CACNA1C_uc001qkt.2_Silent_p.F1906F|CACNA1C_uc001qki.1_Silent_p.F1694F|CACNA1C_uc001qkj.1_Silent_p.F1658F|CACNA1C_uc001qkk.1_Silent_p.F1623F|CACNA1C_uc001qkm.1_Silent_p.F1683F|CACNA1C_uc010sea.1_Silent_p.F578F|uc001qkx.1_Intron|CACNA1C_uc001qky.1_Silent_p.F205F	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	1970	Cytoplasmic (Potential).				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	AGAGGGGTTTCCTCCGCTCTG	0.557													9	14					0	0	1	0	0
TEAD4	7004	broad.mit.edu	37	12	3131044	3131044	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:3131044C>T	uc010sej.1	+	10	1032	c.755C>T	c.(754-756)TCC>TTC	p.S252F	TEAD4_uc010sek.1_Missense_Mutation_p.S209F|TEAD4_uc001qln.2_Missense_Mutation_p.S124F	NM_003213	NP_003204	Q15561	TEAD4_HUMAN	TEA domain family member 4 isoform 1	253					hippo signaling cascade|muscle organ development|skeletal system development		DNA binding|protein binding|sequence-specific DNA binding transcription factor activity				0	Ovarian(42;0.211)		OV - Ovarian serous cystadenocarcinoma(31;0.000563)|COAD - Colon adenocarcinoma(12;0.0831)			ATTGGCCAGTCCAGCCCAAGC	0.368													38	39					0	0	1	0	0
PRMT8	56341	broad.mit.edu	37	12	3692299	3692299	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:3692299G>A	uc001qmf.2	+	8	1271	c.904G>A	c.(904-906)GAC>AAC	p.D302N	PRMT8_uc009zed.2_Missense_Mutation_p.D293N|PRMT8_uc009zee.1_RNA|PRMT8_uc001qmg.2_Missense_Mutation_p.D116N	NM_019854	NP_062828	Q9NR22	ANM8_HUMAN	HMT1 hnRNP methyltransferase-like 4	302					regulation of protein binding	cytoplasm|plasma membrane	histone-arginine N-methyltransferase activity|protein heterodimerization activity|protein homodimerization activity|protein-arginine omega-N asymmetric methyltransferase activity|protein-arginine omega-N monomethyltransferase activity			ovary(3)|central_nervous_system(1)|skin(1)	5			OV - Ovarian serous cystadenocarcinoma(31;0.0109)|COAD - Colon adenocarcinoma(12;0.0264)			ACAGCGCAACGACTACGTCCA	0.483													35	28					0	0	1	0	0
GALNT8	26290	broad.mit.edu	37	12	4870164	4870164	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:4870164C>T	uc001qne.1	+	7	1306	c.1214C>T	c.(1213-1215)TCC>TTC	p.S405F		NM_017417	NP_059113	Q9NY28	GALT8_HUMAN	polypeptide N-acetylgalactosaminyltransferase 8	405	Lumenal (Potential).|Catalytic subdomain B.					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)|pancreas(1)|skin(1)	4						TTGCCCTGTTCCCGGATTGCC	0.527													28	37					0	0	1	0	0
KCNA1	3736	broad.mit.edu	37	12	5021439	5021439	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:5021439G>A	uc001qnh.2	+	2	2000	c.895G>A	c.(895-897)GTT>ATT	p.V299I		NM_000217	NP_000208	Q09470	KCNA1_HUMAN	potassium voltage-gated channel subfamily A	299	Helical; Voltage-sensor; Name=Segment S4; (Potential).				synaptic transmission	juxtaparanode region of axon|voltage-gated potassium channel complex	delayed rectifier potassium channel activity|potassium ion transmembrane transporter activity			ovary(1)|skin(1)	2					Desflurane(DB01189)|Enflurane(DB00228)|Isoflurane(DB00753)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	CTTGGTAAGGGTTTTTAGAAT	0.552													8	44					0	0	1	0	0
ANO2	57101	broad.mit.edu	37	12	5687533	5687533	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:5687533G>A	uc001qnm.2	-	22	2457	c.2385C>T	c.(2383-2385)ATC>ATT	p.I795I		NM_020373	NP_065106	Q9NQ90	ANO2_HUMAN	anoctamin 2	800	Cytoplasmic (Potential).					chloride channel complex|plasma membrane	intracellular calcium activated chloride channel activity			ovary(4)|large_intestine(2)|central_nervous_system(1)	7						GGCACGTACCGATATCTTTGG	0.547													25	38					0	0	1	0	0
VWF	7450	broad.mit.edu	37	12	6061038	6061038	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:6061038C>T	uc001qnn.1	-	50	8377	c.8127G>A	c.(8125-8127)ATG>ATA	p.M2709I	VWF_uc010set.1_Intron	NM_000552	NP_000543	P04275	VWF_HUMAN	von Willebrand factor preproprotein	2709					blood coagulation, intrinsic pathway|cell-substrate adhesion|platelet activation|platelet degranulation|protein homooligomerization	endoplasmic reticulum|platelet alpha granule lumen|proteinaceous extracellular matrix|Weibel-Palade body	chaperone binding|collagen binding|glycoprotein binding|immunoglobulin binding|integrin binding|protease binding|protein homodimerization activity|protein N-terminus binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)	12					Antihemophilic Factor(DB00025)	CTGGAATTTTCATAATTTTAC	0.453													5	32					0	0	1	0	0
PLEKHG6	55200	broad.mit.edu	37	12	6421474	6421474	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:6421474C>T	uc001qnr.2	+	2	230	c.82C>T	c.(82-84)CGA>TGA	p.R28*	PLEKHG6_uc001qns.2_Nonsense_Mutation_p.R28*|PLEKHG6_uc010sew.1_Nonsense_Mutation_p.R28*|PLEKHG6_uc010sex.1_5'Flank	NM_018173	NP_060643	Q3KR16	PKHG6_HUMAN	pleckstrin homology domain-containing family G	28					regulation of Rho protein signal transduction	cleavage furrow|cytoplasm|spindle pole	GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(1)|skin(1)	2						GGGCCGGCATCGAGCCTCTGC	0.622													35	44					0	0	1	0	0
ZNF384	171017	broad.mit.edu	37	12	6787525	6787525	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:6787525G>A	uc010sfh.1	-	6	662	c.454C>T	c.(454-456)CCC>TCC	p.P152S	ZNF384_uc001qpz.2_Missense_Mutation_p.P152S|ZNF384_uc001qqa.2_Missense_Mutation_p.P152S|ZNF384_uc001qqb.2_Missense_Mutation_p.P136S|ZNF384_uc001qqc.2_Missense_Mutation_p.P152S|ZNF384_uc001qqd.2_Intron|ZNF384_uc001qqe.2_Missense_Mutation_p.P136S|ZNF384_uc009zew.1_Missense_Mutation_p.P7S	NM_001135734	NP_001129206	Q8TF68	ZN384_HUMAN	nuclear matrix transcription factor 4 isoform d	152					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding		EWSR1/ZNF384(4)	haematopoietic_and_lymphoid_tissue(4)|central_nervous_system(3)|kidney(1)	8						GAGCCAGGGGGAAGAGCTGAG	0.587			T	EWSR1|TAF15 	ALL								17	30					0	0	1	0	0
C1S	716	broad.mit.edu	37	12	7170304	7170304	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:7170304G>A	uc001qsj.2	+	7	1043	c.324G>A	c.(322-324)GTG>GTA	p.V108V	C1S_uc001qsk.2_Silent_p.V108V|C1S_uc001qsl.2_Silent_p.V108V|C1S_uc009zfr.2_5'UTR|C1S_uc009zfs.2_RNA	NM_201442	NP_958850	P09871	C1S_HUMAN	complement component 1, s subcomponent	108	CUB 1.				complement activation, classical pathway|innate immune response|proteolysis	extracellular region	calcium ion binding|serine-type endopeptidase activity			skin(1)	1					Abciximab(DB00054)|Adalimumab(DB00051)|Basiliximab(DB00074)|Cetuximab(DB00002)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Rituximab(DB00073)|Trastuzumab(DB00072)	AACTCCAGGTGATCTTTAAGT	0.473													25	50					0	0	1	0	0
CD163	9332	broad.mit.edu	37	12	7639286	7639286	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:7639286A>G	uc001qsz.3	-	10	2395	c.2267T>C	c.(2266-2268)GTT>GCT	p.V756A	CD163_uc001qta.3_Missense_Mutation_p.V756A|CD163_uc009zfw.2_Missense_Mutation_p.V789A	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	756	SRCR 7.|Extracellular (Potential).				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						CTGTCTGCAAACCACGTGGGC	0.547													35	110					0	0	1	0	0
CD163	9332	broad.mit.edu	37	12	7640235	7640235	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:7640235G>A	uc001qsz.3	-	8	1898	c.1770C>T	c.(1768-1770)ACC>ACT	p.T590T	CD163_uc001qta.3_Silent_p.T590T|CD163_uc009zfw.2_Silent_p.T623T	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	590	SRCR 6.|Extracellular (Potential).				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						CCTCACACGGGGTCTTGCCAT	0.512													34	58					0	0	1	0	0
FOXJ2	55810	broad.mit.edu	37	12	8200492	8200492	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:8200492C>T	uc001qtu.2	+	7	1917	c.832C>T	c.(832-834)CTG>TTG	p.L278L	FOXJ2_uc001qtt.1_Silent_p.L278L	NM_018416	NP_060886	Q9P0K8	FOXJ2_HUMAN	forkhead box J2	278					embryo development|organ development|pattern specification process|positive regulation of transcription, DNA-dependent|regulation of sequence-specific DNA binding transcription factor activity|tissue development	nucleolus|transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|protein domain specific binding|sequence-specific DNA binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription factor binding			upper_aerodigestive_tract(2)|ovary(2)|skin(1)	5				Kidney(36;0.0944)		TTCTTCTCTCCTGGGGGACAT	0.388													31	56					0	0	1	0	0
AICDA	57379	broad.mit.edu	37	12	8758052	8758052	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:8758052G>A	uc001qur.2	-	3	265	c.186C>T	c.(184-186)CTC>CTT	p.L62L	AICDA_uc001qup.1_Silent_p.L57L|AICDA_uc001quq.1_Silent_p.L57L|AICDA_uc009zgd.1_Intron	NM_020661	NP_065712	Q9GZX7	AICDA_HUMAN	activation-induced cytidine deaminase	62					B cell differentiation|DNA demethylation|mRNA processing|negative regulation of methylation-dependent chromatin silencing	cytoplasm	cytidine deaminase activity|protein binding|zinc ion binding			ovary(1)|pancreas(1)	2	Lung SC(5;0.184)					AGATGTAGCGGAGGAAGAGCA	0.577									Immune_Deficiency_with_Hyper-IgM				9	46					0	0	1	0	0
A2ML1	144568	broad.mit.edu	37	12	8976425	8976425	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:8976425G>A	uc001quz.3	+	3	454	c.356G>A	c.(355-357)GGG>GAG	p.G119E		NM_144670	NP_653271	A8K2U0	A2ML1_HUMAN	alpha-2-macroglobulin-like 1 precursor	Error:Variant_position_missing_in_B3KVV6_after_alignment						extracellular space	endopeptidase inhibitor activity			ovary(2)|skin(1)	3						CAGAGGCAGGGGAACGGCACC	0.507													28	92					0	0	1	0	0
PRB4	5545	broad.mit.edu	37	12	11461408	11461408	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:11461408C>T	uc001qzf.1	-	3	543	c.509G>A	c.(508-510)GGA>GAA	p.G170E	PRB4_uc001qzt.2_Missense_Mutation_p.G170E	NM_002723	NP_002714	P10163	PRB4_HUMAN	proline-rich protein BstNI subfamily 4	233	9.5 X 21 AA tandem repeats of K-P-[EQ]- [GR]-[PR]-[PR]-P-Q-G-G-N-Q-[PS]-[QH]- [RG]-[PT]-P-P-[PH]-P-G.|10; truncated.					extracellular region				ovary(1)	1						GGACTTGTTTCCTTCCTGTGG	0.587										HNSCC(22;0.051)			119	139					0	0	1	0	0
PRB1	5542	broad.mit.edu	37	12	11506604	11506604	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:11506604C>T	uc001qzw.1	-	3	470	c.433G>A	c.(433-435)GGA>AGA	p.G145R	PRB1_uc001qzu.1_Intron|PRB1_uc001qzv.1_Intron	NM_005039	NP_005030	P04280	PRP1_HUMAN	proline-rich protein BstNI subfamily 1 isoform 1	206	15 X 20 AA approximate tandem repeats of P-P-G-K-P-Q-G-P-P-[PAQ]-Q-[GE]-[GD]- [NKS]-[KSQRN]-[PRQS]-[QS] [GPS]-[PQAR]- [PSR].|8.		Missing (in clone CP-4).|Missing (in clone CP-5).|Missing (in allele S).			extracellular region					0			OV - Ovarian serous cystadenocarcinoma(49;0.185)			GACTTGTCTCCTTGTGGGGGT	0.607													21	51					0	0	1	0	0
PRB2	653247	broad.mit.edu	37	12	11546699	11546699	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:11546699C>T	uc010shk.1	-	3	348	c.313G>A	c.(313-315)GGA>AGA	p.G105R		NM_006248	NP_006239			proline-rich protein BstNI subfamily 2												0		all_cancers(2;0.00558)|Acute lymphoblastic leukemia(2;3.94e-11)|all_hematologic(2;3.6e-09)	OV - Ovarian serous cystadenocarcinoma(49;0.185)			GACTTGTCTCCTTGTGGGGGT	0.607													16	448					0	0	1	0	0
GRIN2B	2904	broad.mit.edu	37	12	13716248	13716248	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:13716248C>T	uc001rbt.2	-	13	4103	c.3924G>A	c.(3922-3924)GTG>GTA	p.V1308V		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	1308	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	TCTGCAGGTCCACGAAGGTGT	0.592													41	54					0	0	1	0	0
GRIN2B	2904	broad.mit.edu	37	12	14018774	14018774	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:14018774G>A	uc001rbt.2	-	2	548	c.369C>T	c.(367-369)ATC>ATT	p.I123I		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	123	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	GGATGCCCAGGATGGGGGTGA	0.552													50	74					0	0	1	0	0
GUCY2C	2984	broad.mit.edu	37	12	14774959	14774959	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:14774959C>T	uc001rcd.2	-	22	2718	c.2581G>A	c.(2581-2583)GAT>AAT	p.D861N		NM_004963	NP_004954	P25092	GUC2C_HUMAN	guanylate cyclase 2C precursor	861	Cytoplasmic (Potential).|Guanylate cyclase.				intracellular signal transduction|receptor guanylyl cyclase signaling pathway	integral to membrane	ATP binding|GTP binding|guanylate cyclase activity|protein binding|protein kinase activity|receptor activity			ovary(4)|skin(2)	6						TCATGATGATCAACAATGTGG	0.403													14	17					0	0	1	0	0
PTPRO	5800	broad.mit.edu	37	12	15656883	15656883	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:15656883G>A	uc001rcv.1	+	6	1321	c.1147G>A	c.(1147-1149)GAA>AAA	p.E383K	PTPRO_uc001rcw.1_Missense_Mutation_p.E383K|PTPRO_uc001rcu.1_Missense_Mutation_p.E383K	NM_030667	NP_109592	Q16827	PTPRO_HUMAN	receptor-type protein tyrosine phosphatase O	383	Fibronectin type-III 4.|Extracellular (Potential).					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			skin(5)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)	9		Hepatocellular(102;0.244)				AGAAGCACATGAATTTGTTGC	0.368													7	44					0	0	1	0	0
PIK3C2G	5288	broad.mit.edu	37	12	18800921	18800921	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:18800921G>A	uc001rdt.2	+	32	4413	c.4297G>A	c.(4297-4299)GAT>AAT	p.D1433N	PIK3C2G_uc010sia.1_RNA|PIK3C2G_uc010sib.1_Missense_Mutation_p.D1474N|PIK3C2G_uc010sic.1_Missense_Mutation_p.D1252N	NM_004570	NP_004561	O75747	P3C2G_HUMAN	phosphoinositide-3-kinase, class 2 gamma	1433					cell communication|phosphatidylinositol-mediated signaling	membrane|phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity			lung(8)|central_nervous_system(6)|breast(3)|stomach(2)|ovary(2)	21		Hepatocellular(102;0.194)				TGTCCCACTCGATAAAGAAAA	0.358													11	23					0	0	1	0	0
SLCO1C1	53919	broad.mit.edu	37	12	20854350	20854350	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:20854350C>T	uc001rej.3	+	4	583	c.228C>T	c.(226-228)ATC>ATT	p.I76I	SLCO1C1_uc010sii.1_Silent_p.I76I|SLCO1C1_uc010sij.1_Silent_p.I76I|SLCO1C1_uc009zip.2_Intron|SLCO1C1_uc001rei.2_Silent_p.I76I|SLCO1C1_uc010sik.1_Intron	NM_017435	NP_059131	Q9NYB5	SO1C1_HUMAN	solute carrier organic anion transporter family,	76	Extracellular (Potential).				sodium-independent organic anion transport	integral to membrane|plasma membrane	thyroid hormone transmembrane transporter activity			ovary(5)|pancreas(1)|skin(1)	7	Esophageal squamous(101;0.149)					GGTTTGATATCCCTTCTTCAC	0.413													19	54					0	0	1	0	0
SLCO1C1	53919	broad.mit.edu	37	12	20874895	20874895	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:20874895C>T	uc001rej.3	+	9	1288	c.933C>T	c.(931-933)TCC>TCT	p.S311S	SLCO1C1_uc010sii.1_Silent_p.S311S|SLCO1C1_uc010sij.1_Silent_p.S262S|SLCO1C1_uc009zip.2_Silent_p.S145S|SLCO1C1_uc001rei.2_Silent_p.S311S|SLCO1C1_uc010sik.1_Silent_p.S193S	NM_017435	NP_059131	Q9NYB5	SO1C1_HUMAN	solute carrier organic anion transporter family,	311	Cytoplasmic (Potential).				sodium-independent organic anion transport	integral to membrane|plasma membrane	thyroid hormone transmembrane transporter activity			ovary(5)|pancreas(1)|skin(1)	7	Esophageal squamous(101;0.149)					CTAATTCTTCCTCTGAGAAAT	0.373													6	27					0	0	1	0	0
SLCO1B3	28234	broad.mit.edu	37	12	21033868	21033868	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:21033868G>A	uc001rek.2	+	11	1537	c.1411G>A	c.(1411-1413)GAA>AAA	p.E471K	SLCO1B3_uc001rel.2_Missense_Mutation_p.E471K|SLCO1B3_uc010sil.1_Missense_Mutation_p.E471K|LST-3TM12_uc010sim.1_Intron|SLCO1B3_uc001reo.2_Missense_Mutation_p.E296K	NM_019844	NP_062818	Q9NPD5	SO1B3_HUMAN	solute carrier organic anion transporter family,	471	Extracellular (Potential).|Kazal-like.				bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|cytoplasm|integral to plasma membrane	bile acid transmembrane transporter activity|organic anion transmembrane transporter activity			large_intestine(2)|ovary(1)|skin(1)	4	Esophageal squamous(101;0.149)					AAGTCAGTGGGAACCAGTCTG	0.368													31	53					0	0	1	0	0
SLCO1B1	10599	broad.mit.edu	37	12	21325719	21325719	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:21325719G>A	uc001req.3	+	3	324	c.220G>A	c.(220-222)GAA>AAA	p.E74K		NM_006446	NP_006437	Q9Y6L6	SO1B1_HUMAN	solute carrier organic anion transporter family,	74	Helical; Name=2; (Potential).				bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|integral to plasma membrane|membrane fraction	bile acid transmembrane transporter activity|sodium-independent organic anion transmembrane transporter activity|thyroid hormone transmembrane transporter activity			ovary(3)|skin(3)|pancreas(1)|central_nervous_system(1)	8					Digoxin(DB00390)|Gemfibrozil(DB01241)|Pravastatin(DB00175)	CGGAAGCTTTGAAATTGGTAA	0.244													5	20					0	0	1	0	0
GYS2	2998	broad.mit.edu	37	12	21727167	21727167	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:21727167G>A	uc001rfb.2	-	4	844	c.589C>T	c.(589-591)CCT>TCT	p.P197S		NM_021957	NP_068776	P54840	GYS2_HUMAN	glycogen synthase 2	197					glucose metabolic process|glycogen biosynthetic process|response to glucose stimulus	cortical actin cytoskeleton|cytosol|ectoplasm|insoluble fraction|soluble fraction	glycogen (starch) synthase activity|protein homodimerization activity			lung(1)|skin(1)	2						GTGGCAATAGGAAGTTTCCTG	0.418													17	28					0	0	1	0	0
KCNJ8	3764	broad.mit.edu	37	12	21918682	21918682	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:21918682C>T	uc001rff.2	-	3	1588	c.1250G>A	c.(1249-1251)GGA>GAA	p.G417E		NM_004982	NP_004973	Q15842	IRK8_HUMAN	potassium inwardly-rectifying channel J8	417	Cytoplasmic (By similarity).					voltage-gated potassium channel complex					0					Levosimendan(DB00922)	GTTTTGATTTCCTTCTGGAGT	0.423													43	44					0	0	1	0	0
IFLTD1	160492	broad.mit.edu	37	12	25702438	25702438	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:25702438G>A	uc001rgs.2	-	2	219	c.69C>T	c.(67-69)TCC>TCT	p.S23S	IFLTD1_uc001rgt.1_5'UTR|IFLTD1_uc010sji.1_Silent_p.S44S|IFLTD1_uc010sjj.1_Intron|IFLTD1_uc009zjc.2_Silent_p.S44S	NM_152590	NP_689803	Q8N9Z9	ILFT1_HUMAN	intermediate filament tail domain containing 1	23						intermediate filament	structural molecule activity			ovary(2)|central_nervous_system(1)	3	all_lung(3;2.75e-22)|Lung NSC(3;1.77e-21)|all_hematologic(7;0.00656)|Colorectal(261;0.0847)					ACATCTTTGGGGAAAAATGTA	0.338													8	35					0	0	1	0	0
OVCH1	341350	broad.mit.edu	37	12	29617457	29617457	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:29617457C>T	uc001rix.1	-	18	2108	c.2108G>A	c.(2107-2109)TGG>TAG	p.W703*		NM_183378	NP_899234	Q7RTY7	OVCH1_HUMAN	ovochymase 1 precursor	703	Peptidase S1 2.				proteolysis	extracellular region	metal ion binding|serine-type endopeptidase activity			ovary(3)|central_nervous_system(3)|pancreas(3)|large_intestine(1)	10	Lung NSC(12;1.84e-09)|Acute lymphoblastic leukemia(23;0.00885)|all_hematologic(23;0.0155)					GATGCTTCCCCATCCGGTCAC	0.453													23	14					0	0	1	0	0
C12orf40	283461	broad.mit.edu	37	12	40114666	40114666	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:40114666G>A	uc001rmc.2	+	13	1739	c.1572G>A	c.(1570-1572)ATG>ATA	p.M524I	C12orf40_uc009zjv.1_Intron	NM_001031748	NP_001026918	Q86WS4	CL040_HUMAN	hypothetical protein LOC283461	524										ovary(6)	6						AGGAAAAAATGAATAATTTTT	0.299													5	48					0	0	1	0	0
ADAMTS20	80070	broad.mit.edu	37	12	43896073	43896073	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:43896073C>T	uc010skx.1	-	4	749	c.749G>A	c.(748-750)AGG>AAG	p.R250K		NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	250						proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		ACGTTTTTTCCTGGAATGTCT	0.323													16	33					0	0	1	0	0
ARID2	196528	broad.mit.edu	37	12	46244034	46244034	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:46244034C>T	uc001ros.1	+	15	2128	c.2128C>T	c.(2128-2130)CCT>TCT	p.P710S	ARID2_uc001ror.2_Missense_Mutation_p.P710S|ARID2_uc009zkg.1_Missense_Mutation_p.P166S|ARID2_uc009zkh.1_Missense_Mutation_p.P337S|ARID2_uc001rou.1_Missense_Mutation_p.P44S	NM_152641	NP_689854	Q68CP9	ARID2_HUMAN	AT rich interactive domain 2 (ARID, RFX-like)	710					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(6)|skin(3)|upper_aerodigestive_tract(1)	10	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.106)|all_lung(34;0.22)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.0153)		AGCTCCAATTCCTTGTGAAGT	0.438													56	67					0	0	1	0	0
SLC38A1	81539	broad.mit.edu	37	12	46591572	46591572	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:46591572G>A	uc001rpa.2	-	16	1551	c.1293C>T	c.(1291-1293)TTC>TTT	p.F431F	SLC38A1_uc001rpb.2_Silent_p.F431F|SLC38A1_uc001rpc.2_Silent_p.F431F|SLC38A1_uc001rpd.2_Silent_p.F431F|SLC38A1_uc001rpe.2_Silent_p.F431F|SLC38A1_uc009zkj.1_Silent_p.F431F	NM_030674	NP_109599	Q9H2H9	S38A1_HUMAN	amino acid transporter system A1	431	Helical; (Potential).				cellular nitrogen compound metabolic process|neurotransmitter uptake	integral to membrane|plasma membrane	sodium:amino acid symporter activity			ovary(2)|skin(2)|central_nervous_system(1)	5	Lung SC(27;0.137)|Renal(347;0.236)		all cancers(1;0.00805)|OV - Ovarian serous cystadenocarcinoma(5;0.0106)|Epithelial(2;0.0344)			AAGGAAGAATGAAAATAAGCA	0.353													26	34					0	0	1	0	0
SLC38A4	55089	broad.mit.edu	37	12	47186763	47186763	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:47186763C>T	uc001rpi.2	-	3	491	c.92G>A	c.(91-93)GGA>GAA	p.G31E	SLC38A4_uc001rpj.2_Missense_Mutation_p.G31E|SLC38A4_uc009zkl.2_Missense_Mutation_p.G31E	NM_018018	NP_060488	Q969I6	S38A4_HUMAN	solute carrier family 38, member 4	31	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process|sodium ion transport	integral to membrane|plasma membrane	amino acid transmembrane transporter activity|symporter activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Lung SC(27;0.192)|Renal(347;0.236)					TTCTGAATTTCCTATCCCGAT	0.428													64	83					0	0	1	0	0
DHH	50846	broad.mit.edu	37	12	49485129	49485129	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:49485129T>C	uc001rtf.2	-	2	654	c.347A>G	c.(346-348)AAC>AGC	p.N116S		NM_021044	NP_066382	O43323	DHH_HUMAN	desert hedgehog preproprotein	116					cell-cell signaling|proteolysis	extracellular space|plasma membrane	calcium ion binding|peptidase activity|zinc ion binding			lung(1)|breast(1)	2						GGGCCACATGTTCATCACGGC	0.607													21	23					0	0	1	0	0
TUBA1A	7846	broad.mit.edu	37	12	49579362	49579362	+	Missense_Mutation	SNP	G	A	A	rs137853046		TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:49579362G>A	uc009zlf.2	-	4	1059	c.787C>T	c.(787-789)CCC>TCC	p.P263S	TUBA1B_uc001rto.2_Intron|TUBA1A_uc001rtp.2_Missense_Mutation_p.P263S|TUBA1A_uc001rtq.2_Missense_Mutation_p.P110S|TUBA1A_uc001rtr.2_Missense_Mutation_p.P110S|TUBA1A_uc009zlg.2_Missense_Mutation_p.P110S	NM_006009	NP_006000	Q71U36	TBA1A_HUMAN	tubulin, alpha 1a	263			P -> T (in LIS3).		'de novo' posttranslational protein folding|G2/M transition of mitotic cell cycle|microtubule-based movement|protein polymerization	cytosol|microtubule	GTP binding|GTPase activity|structural molecule activity				0						TGGATGCGGGGATAGGGCACC	0.498													44	41					0	0	1	0	0
KCNH3	23416	broad.mit.edu	37	12	49951225	49951225	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:49951225G>A	uc001ruh.1	+	15	3001	c.2741G>A	c.(2740-2742)AGG>AAG	p.R914K	KCNH3_uc010smj.1_Missense_Mutation_p.R854K	NM_012284	NP_036416	Q9ULD8	KCNH3_HUMAN	potassium voltage-gated channel, subfamily H	914	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	two-component sensor activity|voltage-gated potassium channel activity				0						GCGCCCCACAGGGAGGGTCCG	0.667													9	15					0	0	1	0	0
DIP2B	57609	broad.mit.edu	37	12	51086731	51086731	+	Splice_Site	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:51086731G>A	uc001rwv.2	+	14	1811	c.1655_splice	c.e14-1	p.G552_splice	DIP2B_uc009zlt.2_Splice_Site	NM_173602	NP_775873	Q9P265	DIP2B_HUMAN	DIP2 disco-interacting protein 2 homolog B							nucleus	catalytic activity|transcription factor binding			ovary(4)|breast(1)|pancreas(1)	6						TTCTATTTTAGGGGAAACAAT	0.338													19	35					0	0	1	0	0
ANKRD33	341405	broad.mit.edu	37	12	52284683	52284683	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:52284683C>T	uc001rzf.3	+	5	1157	c.578C>T	c.(577-579)CCC>CTC	p.P193L	ANKRD33_uc001rzh.3_3'UTR|ANKRD33_uc001rzd.2_Missense_Mutation_p.P318L|ANKRD33_uc001rze.2_Missense_Mutation_p.P214L|ANKRD33_uc001rzg.3_Missense_Mutation_p.P120L|ANKRD33_uc001rzi.3_Missense_Mutation_p.P193L	NM_001130015	NP_001123487	Q7Z3H0	ANR33_HUMAN	ankyrin repeat domain 33 isoform 1	193											0				BRCA - Breast invasive adenocarcinoma(357;0.0969)		CTGGCCAGTCCCTTCGTCACC	0.642													9	12					0	0	1	0	0
KRT80	144501	broad.mit.edu	37	12	52579234	52579234	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:52579234C>T	uc001rzx.2	-	2	536	c.438G>A	c.(436-438)GTG>GTA	p.V146V	KRT80_uc001rzw.2_Silent_p.V83V|KRT80_uc001rzy.2_Silent_p.V146V	NM_182507	NP_872313	Q6KB66	K2C80_HUMAN	keratin 80 isoform a	146	Coil 1B.|Rod.					keratin filament	structural molecule activity				0				BRCA - Breast invasive adenocarcinoma(357;0.108)		GCTCCTGGCTCACTTTGCGCA	0.607													40	51					0	0	1	0	0
KRT74	121391	broad.mit.edu	37	12	52967314	52967314	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:52967314C>T	uc001sap.1	-	1	296	c.248G>A	c.(247-249)GGG>GAG	p.G83E		NM_175053	NP_778223	Q7RTS7	K2C74_HUMAN	keratin 6 irs4	83	Head.|Gly-rich.					keratin filament	structural molecule activity			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(357;0.191)		GGCCCGGCCCCCTCCATACCC	0.612													17	24					0	0	1	0	0
KRT1	3848	broad.mit.edu	37	12	53070202	53070202	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:53070202C>T	uc001sau.1	-	7	1391	c.1332G>A	c.(1330-1332)CTG>CTA	p.L444L	KRT1_uc001sav.1_Silent_p.L444L	NM_006121	NP_006112	P04264	K2C1_HUMAN	keratin 1	444	Rod.|Coil 2.				complement activation, lectin pathway|epidermis development|fibrinolysis|regulation of angiogenesis|response to oxidative stress	plasma membrane	protein binding|receptor activity|structural constituent of cytoskeleton|sugar binding			ovary(1)|skin(1)	2						CCAGGTCATTCAGCTTGTTCT	0.562													7	31					0	0	1	0	0
TENC1	23371	broad.mit.edu	37	12	53452555	53452556	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:53452555_53452556CC>TT	uc001sbp.2	+	17	1484_1485	c.1349_1350CC>TT	c.(1348-1350)GCC>GTT	p.A450V	TENC1_uc001sbl.2_Missense_Mutation_p.A326V|TENC1_uc001sbn.2_Missense_Mutation_p.A460V|TENC1_uc001sbq.2_5'UTR|TENC1_uc001sbr.2_RNA|TENC1_uc009zmr.2_5'Flank|TENC1_uc001sbs.2_5'Flank	NM_170754	NP_736610	Q63HR2	TENC1_HUMAN	tensin like C1 domain containing phosphatase	450					intracellular signal transduction|negative regulation of cell proliferation	focal adhesion	metal ion binding|phosphoprotein phosphatase activity|protein binding			ovary(1)|pancreas(1)	2						ACTGAGCCAGCCGTGCGCTGGG	0.639													5	45					0	0	1	0	0
ITGB7	3695	broad.mit.edu	37	12	53586959	53586959	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:53586959G>A	uc009zmv.2	-	11	1762	c.1691C>T	c.(1690-1692)GCC>GTC	p.A564V	ITGB7_uc001scc.2_Missense_Mutation_p.A564V|ITGB7_uc010snz.1_Intron	NM_000889	NP_000880	P26010	ITB7_HUMAN	integrin, beta 7 precursor	564	Cysteine-rich tandem repeats.|Extracellular (Potential).|II.				cell-matrix adhesion|integrin-mediated signaling pathway|multicellular organismal development|regulation of immune response	integrin complex	identical protein binding|metal ion binding|receptor activity			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|urinary_tract(1)|breast(1)	8						CTCACAGCTGGCATCGTCACA	0.617													21	21					0	0	1	0	0
AAAS	8086	broad.mit.edu	37	12	53715136	53715136	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:53715136G>A	uc001scr.3	-	1	277	c.114C>T	c.(112-114)TTC>TTT	p.F38F	AAAS_uc001scs.3_Silent_p.F38F	NM_015665	NP_056480	Q9NRG9	AAAS_HUMAN	achalasia, adrenocortical insufficiency,	38					carbohydrate metabolic process|glucose transport|nucleocytoplasmic transport|regulation of glucose transport|regulation of nucleocytoplasmic transport|transmembrane transport|viral reproduction	nuclear pore				ovary(1)	1						CCTGGCCCCGGAAGTCGGGGG	0.657													49	63					0	0	1	0	0
NCKAP1L	3071	broad.mit.edu	37	12	54936461	54936461	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:54936461C>T	uc001sgc.3	+	31	3455	c.3376C>T	c.(3376-3378)CTA>TTA	p.L1126L	NCKAP1L_uc010sox.1_Silent_p.L668L|NCKAP1L_uc010soy.1_Silent_p.L1076L	NM_005337	NP_005328	P55160	NCKPL_HUMAN	NCK-associated protein 1-like	1126					actin polymerization-dependent cell motility|B cell homeostasis|B cell receptor signaling pathway|cortical actin cytoskeleton organization|erythrocyte development|maintenance of cell polarity|myeloid cell homeostasis|negative regulation of apoptosis|negative regulation of interleukin-17 production|negative regulation of interleukin-6 production|negative regulation of myosin-light-chain-phosphatase activity|neutrophil chemotaxis|positive regulation of actin filament polymerization|positive regulation of B cell differentiation|positive regulation of B cell proliferation|positive regulation of CD4-positive, alpha-beta T cell differentiation|positive regulation of CD8-positive, alpha-beta T cell differentiation|positive regulation of cell adhesion mediated by integrin|positive regulation of erythrocyte differentiation|positive regulation of gamma-delta T cell differentiation|positive regulation of neutrophil chemotaxis|positive regulation of phagocytosis, engulfment|positive regulation of T cell proliferation|protein complex assembly|response to drug|T cell homeostasis	cytosol|integral to plasma membrane|membrane fraction|SCAR complex	protein complex binding|protein kinase activator activity|Rac GTPase activator activity			ovary(3)|central_nervous_system(1)	4						GGCCTTCCACCTAAACTGAAT	0.552													36	45					0	0	1	0	0
PDE1B	5153	broad.mit.edu	37	12	54966504	54966504	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:54966504C>T	uc001sgd.1	+	7	880	c.714C>T	c.(712-714)TTC>TTT	p.F238F	PDE1B_uc010soz.1_Silent_p.F101F|PDE1B_uc010spa.1_Silent_p.F197F|PDE1B_uc001sgf.2_Silent_p.F101F|PDE1B_uc001sge.2_Silent_p.F218F|PDE1B_uc009znq.2_Silent_p.F34F	NM_000924	NP_000915	Q01064	PDE1B_HUMAN	phosphodiesterase 1B isoform 1	238	Catalytic (By similarity).				activation of phospholipase C activity|apoptosis|nerve growth factor receptor signaling pathway|platelet activation	cytosol|nucleus	3',5'-cyclic-AMP phosphodiesterase activity|calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			upper_aerodigestive_tract(1)|ovary(1)	2						TCCATTGCTTCTTGCTCCGCA	0.517													113	133					0	0	1	0	0
MUCL1	118430	broad.mit.edu	37	12	55252025	55252025	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:55252025G>A	uc001sgk.2	+	4	340	c.272G>A	c.(271-273)TGA>TAA	p.*91*		NM_058173	NP_477521	Q96DR8	MUCL1_HUMAN	small breast epithelial mucin precursor	91						extracellular region|membrane					0						GTGTGTCCCTGAGATGGAATC	0.428													32	67					0	0	1	0	0
OR6C1	390321	broad.mit.edu	37	12	55715194	55715194	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:55715194G>A	uc010spi.1	+	1	811	c.811G>A	c.(811-813)GGA>AGA	p.G271R		NM_001005182	NP_001005182	Q96RD1	OR6C1_HUMAN	olfactory receptor, family 6, subfamily C,	271	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)	2						CTTGAGCAAGGGAGTGGCAAT	0.428													35	58					0	0	1	0	0
OR6C75	390323	broad.mit.edu	37	12	55759151	55759151	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:55759151G>A	uc010spk.1	+	1	257	c.257G>A	c.(256-258)GGA>GAA	p.G86E		NM_001005497	NP_001005497	A6NL08	O6C75_HUMAN	olfactory receptor, family 6, subfamily C,	86	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|large_intestine(1)	3						GTTGTGACAGGAAACAGAACC	0.433													38	58					0	0	1	0	0
OR6C68	403284	broad.mit.edu	37	12	55887086	55887086	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:55887086C>T	uc010spo.1	+	1	940	c.940C>T	c.(940-942)CGT>TGT	p.R314C		NM_001005519	NP_001005519	A6NDL8	O6C68_HUMAN	olfactory receptor, family 6, subfamily C,	309	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						AATTGCATTTCGTTTAAAAAA	0.279													12	26					0	0	1	0	0
OR10P1	121130	broad.mit.edu	37	12	56031367	56031367	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:56031367C>T	uc010spq.1	+	1	692	c.692C>T	c.(691-693)TCC>TTC	p.S231F		NM_206899	NP_996782	Q8NGE3	O10P1_HUMAN	olfactory receptor, family 10, subfamily P,	231	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|pancreas(1)	2						GCAATGGCCTCCACCCAGAGC	0.557													19	79					0	0	1	0	0
ITGA7	3679	broad.mit.edu	37	12	56086745	56086745	+	Silent	SNP	C	T	T	rs142409842		TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:56086745C>T	uc001shh.2	-	21	2959	c.2739G>A	c.(2737-2739)AGG>AGA	p.R913R	ITGA7_uc001shg.2_Silent_p.R909R|ITGA7_uc010sps.1_Silent_p.R816R|ITGA7_uc009znw.2_Silent_p.R156R|ITGA7_uc009znx.2_Silent_p.R790R	NM_001144996	NP_001138468	Q13683	ITA7_HUMAN	integrin alpha 7 isoform 1 precursor	953	Poly-Arg.|Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|muscle organ development|regulation of cell shape	integrin complex	receptor activity	p.R909R(1)		ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5						GCCTCCTATCCCTACTGTCCA	0.617													4	25					0	0	1	0	0
MIP	4284	broad.mit.edu	37	12	56848075	56848075	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:56848075G>A	uc001slh.2	-	1	355	c.323C>T	c.(322-324)ACC>ATC	p.T108I		NM_012064	NP_036196	P30301	MIP_HUMAN	major intrinsic protein of lens fiber	108	Extracellular (By similarity).				response to stimulus|visual perception	gap junction|integral to plasma membrane	structural constituent of eye lens			skin(1)	1						AGCAGGTGGGGTAACGCTATA	0.597													22	34					0	0	1	0	0
LRP1	4035	broad.mit.edu	37	12	57578891	57578891	+	Silent	SNP	C	T	T	rs144748998		TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:57578891C>T	uc001snd.2	+	40	6832	c.6366C>T	c.(6364-6366)CGC>CGT	p.R2122R		NM_002332	NP_002323	Q07954	LRP1_HUMAN	low density lipoprotein-related protein 1	2122	Extracellular (Potential).				aorta morphogenesis|apoptotic cell clearance|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of Wnt receptor signaling pathway|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			ovary(8)|lung(3)|breast(3)|large_intestine(2)|central_nervous_system(2)|skin(2)|pancreas(2)	22				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	CTATCAAGCGCGGGAGCAAAG	0.592													33	37					0	0	1	0	0
DTX3	196403	broad.mit.edu	37	12	58001063	58001064	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:58001063_58001064CC>TT	uc001sow.1	+	5	754_755	c.417_418CC>TT	c.(415-420)CCCCCT>CCTTCT	p.P140S	DTX3_uc001sov.1_Missense_Mutation_p.P133S|DTX3_uc001sox.1_Missense_Mutation_p.P133S|DTX3_uc001soy.1_Missense_Mutation_p.P133S|GEFT_uc009zpy.2_5'Flank	NM_178502	NP_848597	Q8N9I9	DTX3_HUMAN	deltex homolog 3	140	Pro-rich.				Notch signaling pathway	cytoplasm	zinc ion binding			breast(1)|central_nervous_system(1)	2	Melanoma(17;0.122)					GGGGGctcccccctcctcctcc	0.525													4	6					0	0	1	0	0
LRIG3	121227	broad.mit.edu	37	12	59268218	59268218	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:59268218G>A	uc001sqr.2	-	17	3079	c.2833C>T	c.(2833-2835)CAT>TAT	p.H945Y	LRIG3_uc009zqh.2_Missense_Mutation_p.H885Y|LRIG3_uc010ssh.1_RNA	NM_153377	NP_700356	Q6UXM1	LRIG3_HUMAN	leucine-rich repeats and immunoglobulin-like	945						integral to membrane				skin(3)|ovary(1)	4			GBM - Glioblastoma multiforme(1;1.17e-18)			CTACCTGTATGATATGTTTCA	0.423													28	67					0	0	1	0	0
USP15	9958	broad.mit.edu	37	12	62790107	62790107	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:62790107C>T	uc001src.1	+	20	2612	c.2603C>T	c.(2602-2604)CCA>CTA	p.P868L	USP15_uc001srb.1_Missense_Mutation_p.P839L	NM_006313	NP_006304	Q9Y4E8	UBP15_HUMAN	ubiquitin specific peptidase 15	868					protein deubiquitination|ubiquitin-dependent protein catabolic process		cysteine-type endopeptidase activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(2)|lung(1)	3			GBM - Glioblastoma multiforme(1;0.000276)	GBM - Glioblastoma multiforme(28;0.0622)		TTAATTAATCCAAATGCAGGT	0.383													6	37					0	0	1	0	0
GRIP1	23426	broad.mit.edu	37	12	66856755	66856755	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:66856755C>T	uc001stk.2	-	9	1232	c.991G>A	c.(991-993)GAG>AAG	p.E331K	GRIP1_uc010sta.1_Missense_Mutation_p.E275K|GRIP1_uc001stj.2_Missense_Mutation_p.E61K|GRIP1_uc001stl.1_Missense_Mutation_p.E275K|GRIP1_uc001stm.2_Missense_Mutation_p.E331K	NM_021150	NP_066973	Q9Y3R0	GRIP1_HUMAN	glutamate receptor interacting protein 1	331	PDZ 3.				androgen receptor signaling pathway|intracellular signal transduction|positive regulation of transcription, DNA-dependent|synaptic transmission	cell junction|cytoplasmic membrane-bounded vesicle|cytosol|endoplasmic reticulum|postsynaptic membrane	androgen receptor binding|beta-catenin binding|protein C-terminus binding|receptor signaling complex scaffold activity|transcription coactivator activity			ovary(2)	2			GBM - Glioblastoma multiforme(2;0.00069)	GBM - Glioblastoma multiforme(28;0.0933)		GGAAGGATCTCAAGCTTGACC	0.557													9	18					0	0	1	0	0
CAND1	55832	broad.mit.edu	37	12	67700147	67700147	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:67700147C>G	uc001stn.2	+	10	3136	c.2699C>G	c.(2698-2700)ACT>AGT	p.T900S	CAND1_uc001sto.2_Missense_Mutation_p.T410S	NM_018448	NP_060918	Q86VP6	CAND1_HUMAN	TIP120 protein	900	HEAT 21.				cell differentiation|negative regulation of catalytic activity|protein ubiquitination|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|ubiquitin ligase complex	protein binding			central_nervous_system(1)|skin(1)	2			GBM - Glioblastoma multiforme(1;1.13e-10)|Lung(24;0.000342)|LUSC - Lung squamous cell carcinoma(43;0.196)	GBM - Glioblastoma multiforme(28;0.0279)		CAAGAAATAACTAGTCAACCC	0.418													15	45					0	0	1	0	0
DYRK2	8445	broad.mit.edu	37	12	68052220	68052220	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:68052220C>T	uc001str.3	+	3	1935	c.1533C>T	c.(1531-1533)TTC>TTT	p.F511F	DYRK2_uc001sts.3_Silent_p.F438F	NM_006482	NP_006473	Q92630	DYRK2_HUMAN	dual-specificity tyrosine-(Y)-phosphorylation	511	Protein kinase.				apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|positive regulation of glycogen biosynthetic process|smoothened signaling pathway	cytoplasm|nucleus	ATP binding|magnesium ion binding|manganese ion binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(2)|breast(1)|central_nervous_system(1)	4			Lung(24;6.81e-05)|LUAD - Lung adenocarcinoma(15;0.00107)|LUSC - Lung squamous cell carcinoma(43;0.196)	GBM - Glioblastoma multiforme(7;0.000573)		TCCTTGACTTCTTAAAACAGT	0.622													9	52					0	0	1	0	0
BEST3	144453	broad.mit.edu	37	12	70091477	70091477	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:70091477C>T	uc001svg.2	-	2	329	c.102G>A	c.(100-102)AGG>AGA	p.R34R	BEST3_uc001svd.1_Silent_p.R34R|BEST3_uc001sve.1_Intron|BEST3_uc010stm.1_Intron|BEST3_uc001svh.2_Intron|BEST3_uc001svi.1_Intron	NM_032735	NP_116124	Q8N1M1	BEST3_HUMAN	vitelliform macular dystrophy 2-like 3 isoform	34	Helical; (Potential).					chloride channel complex|plasma membrane	chloride channel activity				0	Breast(13;2.31e-06)|Esophageal squamous(21;0.187)		Lung(24;0.000278)|OV - Ovarian serous cystadenocarcinoma(12;0.0019)|STAD - Stomach adenocarcinoma(21;0.00694)			CAATAAATTCCCTGTACAGTA	0.358													41	49					0	0	1	0	0
RAB3IP	117177	broad.mit.edu	37	12	70189094	70189094	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:70189094G>A	uc001svp.2	+	6	1353	c.906G>A	c.(904-906)GTG>GTA	p.V302V	RAB3IP_uc001svl.1_Silent_p.V286V|RAB3IP_uc001svm.2_Silent_p.V286V|RAB3IP_uc001svn.2_Silent_p.V286V|RAB3IP_uc001svo.2_RNA|RAB3IP_uc001svq.2_Silent_p.V302V|RAB3IP_uc001svr.2_RNA|RAB3IP_uc001svs.2_RNA|RAB3IP_uc001svt.2_Silent_p.V80V	NM_175623	NP_783322	Q96QF0	RAB3I_HUMAN	RAB3A interacting protein isoform alpha 2	302					cilium assembly|Golgi to plasma membrane transport|protein localization to organelle|protein transport	actin cortical patch|centrosome|cytosol|lamellipodium|microtubule basal body|nucleus	guanyl-nucleotide exchange factor activity|protein binding			ovary(1)	1	Esophageal squamous(21;0.187)		Lung(24;0.000381)|OV - Ovarian serous cystadenocarcinoma(12;0.00168)|STAD - Stomach adenocarcinoma(21;0.00694)			ACCTCAGTGTGATACAGCCAA	0.443													10	14					0	0	1	0	0
RAB3IP	117177	broad.mit.edu	37	12	70206786	70206786	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:70206786C>T	uc001svp.2	+	10	1768	c.1321C>T	c.(1321-1323)CAG>TAG	p.Q441*	RAB3IP_uc001svm.2_Nonsense_Mutation_p.Q425*|RAB3IP_uc001svn.2_Silent_p.F391F|RAB3IP_uc001svo.2_RNA|RAB3IP_uc001svq.2_Silent_p.F407F|RAB3IP_uc001svr.2_RNA|RAB3IP_uc001svs.2_RNA|RAB3IP_uc001svt.2_Nonsense_Mutation_p.Q219*	NM_175623	NP_783322	Q96QF0	RAB3I_HUMAN	RAB3A interacting protein isoform alpha 2	441					cilium assembly|Golgi to plasma membrane transport|protein localization to organelle|protein transport	actin cortical patch|centrosome|cytosol|lamellipodium|microtubule basal body|nucleus	guanyl-nucleotide exchange factor activity|protein binding			ovary(1)	1	Esophageal squamous(21;0.187)		Lung(24;0.000381)|OV - Ovarian serous cystadenocarcinoma(12;0.00168)|STAD - Stomach adenocarcinoma(21;0.00694)			TCGATACATTCAGCAGGGACT	0.343													33	37					0	0	1	0	0
PTPRB	5787	broad.mit.edu	37	12	70949861	70949861	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:70949861G>A	uc001swb.3	-	17	4158	c.4128C>T	c.(4126-4128)ATC>ATT	p.I1376I	PTPRB_uc010sto.1_Silent_p.I1286I|PTPRB_uc010stp.1_Silent_p.I1286I|PTPRB_uc001swc.3_Silent_p.I1594I|PTPRB_uc001swa.3_Silent_p.I1506I	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	1376	Fibronectin type-III 16.|Extracellular (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			AATCAGGAGGGATCCAAGAAC	0.453													13	25					0	0	1	0	0
TRHDE	29953	broad.mit.edu	37	12	72680647	72680647	+	Silent	SNP	A	G	G			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:72680647A>G	uc001sxa.2	+	2	996	c.966A>G	c.(964-966)TCA>TCG	p.S322S		NM_013381	NP_037513	Q9UKU6	TRHDE_HUMAN	thyrotropin-releasing hormone degrading enzyme	322	Extracellular (Potential).				cell-cell signaling|proteolysis|signal transduction	integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3						ATCACTTTTCACAGACCCCTC	0.403													48	40					0	0	1	0	0
TRHDE	29953	broad.mit.edu	37	12	73012741	73012741	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:73012741C>T	uc001sxa.2	+	13	2287	c.2257C>T	c.(2257-2259)CCT>TCT	p.P753S		NM_013381	NP_037513	Q9UKU6	TRHDE_HUMAN	thyrotropin-releasing hormone degrading enzyme	753	Extracellular (Potential).				cell-cell signaling|proteolysis|signal transduction	integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3						GGATTTTCTTCCTTGGCATGC	0.363													14	51					0	0	1	0	0
TRHDE	29953	broad.mit.edu	37	12	73046806	73046806	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:73046806C>T	uc001sxa.2	+	17	2749	c.2719C>T	c.(2719-2721)CTG>TTG	p.L907L		NM_013381	NP_037513	Q9UKU6	TRHDE_HUMAN	thyrotropin-releasing hormone degrading enzyme	907	Extracellular (Potential).				cell-cell signaling|proteolysis|signal transduction	integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3						GCTTCTAAATCTGTCACTGAA	0.333													13	21					0	0	1	0	0
GALNT4	8693	broad.mit.edu	37	12	89916654	89916654	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:89916654G>A	uc001tbd.2	-	1	1882	c.1673C>T	c.(1672-1674)CCT>CTT	p.P558L	POC1B_uc001tba.2_Intron|POC1B_uc001tbb.2_Intron|POC1B_uc001tbc.2_Intron|POC1B_uc010sun.1_Intron|GALNT4_uc001tbe.2_Missense_Mutation_p.P555L|GALNT4_uc010suo.1_Missense_Mutation_p.P250L	NM_003774	NP_003765	Q8N4A0	GALT4_HUMAN	polypeptide N-acetylgalactosaminyltransferase 4	558	Ricin B-type lectin.|Lumenal (Potential).				carbohydrate metabolic process	Golgi membrane|integral to membrane|perinuclear region of cytoplasm	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding				0						TTGTACATCAGGTCGGCCCTC	0.408													20	85					0	0	1	0	0
PLXNC1	10154	broad.mit.edu	37	12	94543483	94543483	+	Missense_Mutation	SNP	T	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:94543483T>A	uc001tdc.2	+	1	985	c.736T>A	c.(736-738)TTC>ATC	p.F246I		NM_005761	NP_005752	O60486	PLXC1_HUMAN	plexin C1 precursor	246	Extracellular (Potential).|Sema.				axon guidance|cell adhesion	integral to membrane|intracellular|plasma membrane	receptor activity|receptor binding			ovary(2)|central_nervous_system(1)	3						CAGCATCTACTTCCCCTACTA	0.687													8	15					0	0	1	0	0
CCDC38	120935	broad.mit.edu	37	12	96300215	96300215	+	Missense_Mutation	SNP	T	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:96300215T>A	uc001tek.1	-	5	553	c.319A>T	c.(319-321)AGG>TGG	p.R107W		NM_182496	NP_872302	Q502W7	CCD38_HUMAN	coiled-coil domain containing 38	107										skin(1)	1						TGGACAGTCCTTTTTGTGTCG	0.328													7	30					0	0	1	0	0
C12orf63	374467	broad.mit.edu	37	12	97136260	97136260	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:97136260C>T	uc001tet.1	+	19	2468	c.2390C>T	c.(2389-2391)TCC>TTC	p.S797F		NM_198520	NP_940922	Q6ZTY8	CL063_HUMAN	hypothetical protein LOC374467	797										skin(6)|ovary(1)	7						GATCCTATTTCCCTAAATGCC	0.368													4	22					0	0	1	0	0
C12orf63	374467	broad.mit.edu	37	12	97137642	97137642	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:97137642G>A	uc001tet.1	+	21	2864	c.2786G>A	c.(2785-2787)GGA>GAA	p.G929E		NM_198520	NP_940922	Q6ZTY8	CL063_HUMAN	hypothetical protein LOC374467	929										skin(6)|ovary(1)	7						TCAAAAACAGGAAAATTAAAT	0.398													23	28					0	0	1	0	0
ANO4	121601	broad.mit.edu	37	12	101381371	101381371	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:101381371G>C	uc010svm.1	+	8	1229	c.657G>C	c.(655-657)AGG>AGC	p.R219S	ANO4_uc010svl.1_RNA|ANO4_uc001thw.2_Missense_Mutation_p.R184S|ANO4_uc001thx.2_Missense_Mutation_p.R219S	NM_178826	NP_849148	Q32M45	ANO4_HUMAN	anoctamin 4	219	Extracellular (Potential).					chloride channel complex	chloride channel activity			ovary(4)|skin(2)	6						AGCCAATGAGGCTGGACAAGG	0.493										HNSCC(74;0.22)	OREG0022059	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	102	119					0	0	1	0	0
GLT8D2	83468	broad.mit.edu	37	12	104387193	104387193	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:104387193G>A	uc001tkh.1	-	10	1263	c.857C>T	c.(856-858)CCC>CTC	p.P286L	GLT8D2_uc001tki.1_Missense_Mutation_p.P286L	NM_031302	NP_112592	Q9H1C3	GL8D2_HUMAN	glycosyltransferase 8 domain containing 2	286	Lumenal (Potential).					integral to membrane	transferase activity, transferring glycosyl groups			ovary(1)|skin(1)	2						GTGCCACAGGGGGTTAATTGT	0.378													22	13					0	0	1	0	0
HCFC2	29915	broad.mit.edu	37	12	104487275	104487275	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:104487275C>T	uc001tkj.3	+	10	1499	c.1396C>T	c.(1396-1398)CCA>TCA	p.P466S	HCFC2_uc009zul.2_RNA	NM_013320	NP_037452	Q9Y5Z7	HCFC2_HUMAN	host cell factor C2	466					regulation of transcription from RNA polymerase II promoter|viral reproduction	cytoplasm|nucleus	transcription coactivator activity			ovary(2)|central_nervous_system(1)	3						CATTTTATATCCATCTTTGGC	0.328													19	23					0	0	1	0	0
TXNRD1	7296	broad.mit.edu	37	12	104719121	104719121	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:104719121C>G	uc010swk.1	+	11	1244	c.1222C>G	c.(1222-1224)CAA>GAA	p.Q408E	TXNRD1_uc010swl.1_Missense_Mutation_p.Q258E|TXNRD1_uc010swm.1_Missense_Mutation_p.Q310E|TXNRD1_uc010swn.1_Missense_Mutation_p.Q258E|TXNRD1_uc010swo.1_Missense_Mutation_p.Q258E|TXNRD1_uc010swp.1_Missense_Mutation_p.Q220E|TXNRD1_uc010swq.1_Missense_Mutation_p.Q308E|TXNRD1_uc001tku.2_RNA|TXNRD1_uc009zun.2_Missense_Mutation_p.Q324E	NM_001093771	NP_001087240	Q16881	TRXR1_HUMAN	thioredoxin reductase 1 isoform 3	408					cell redox homeostasis|cellular lipid metabolic process|electron transport chain|nucleobase, nucleoside and nucleotide interconversion|signal transduction|transport	cytosol|nucleolus	electron carrier activity|flavin adenine dinucleotide binding|NADP binding|protein disulfide oxidoreductase activity|thioredoxin-disulfide reductase activity				0						ACAGGTTGAACAAATTGAAGC	0.403													11	9					0	0	1	0	0
TMEM119	338773	broad.mit.edu	37	12	108985763	108985763	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:108985763G>A	uc001tng.2	-	2	560	c.397C>T	c.(397-399)CCC>TCC	p.P133S	TMEM119_uc001tnf.2_RNA	NM_181724	NP_859075	Q4V9L6	TM119_HUMAN	transmembrane protein 119 precursor	133	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1						TTCTTCTTGGGGAAGGACGAT	0.542													6	10					0	0	1	0	0
USP30	84749	broad.mit.edu	37	12	109523518	109523519	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:109523518_109523519GG>AA	uc010sxi.1	+	13	1440_1441	c.1336_1337GG>AA	c.(1336-1338)GGA>AAA	p.G446K	USP30_uc001tnu.3_Missense_Mutation_p.G415K|USP30_uc001tnw.3_Missense_Mutation_p.G163K	NM_032663	NP_116052	Q70CQ3	UBP30_HUMAN	ubiquitin specific peptidase 30	446	Cytoplasmic (Potential).				ubiquitin-dependent protein catabolic process	integral to membrane|mitochondrial outer membrane	cysteine-type peptidase activity|ubiquitin thiolesterase activity			lung(1)	1						CGTCCACCATGGAGACATGCAC	0.495													19	64					0	0	1	0	0
TRPV4	59341	broad.mit.edu	37	12	110226369	110226369	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:110226369C>T	uc001tpj.1	-	12	2139	c.2044G>A	c.(2044-2046)GAC>AAC	p.D682N	TRPV4_uc001tpg.1_Missense_Mutation_p.D648N|TRPV4_uc001tph.1_Missense_Mutation_p.D635N|TRPV4_uc001tpi.1_Missense_Mutation_p.D575N|TRPV4_uc001tpk.1_Missense_Mutation_p.D682N|TRPV4_uc001tpl.1_Missense_Mutation_p.D622N	NM_021625	NP_067638	Q9HBA0	TRPV4_HUMAN	transient receptor potential cation channel,	682					actin cytoskeleton reorganization|actin filament organization|calcium ion import|cell death|cell volume homeostasis|cell-cell junction assembly|cellular hypotonic response|cortical microtubule organization|elevation of cytosolic calcium ion concentration|microtubule polymerization|negative regulation of neuron projection development|osmosensory signaling pathway|positive regulation of microtubule depolymerization|response to mechanical stimulus	cortical actin cytoskeleton|filopodium|focal adhesion|growth cone|integral to membrane|lamellipodium|ruffle membrane	actin filament binding|alpha-tubulin binding|beta-tubulin binding|calcium channel activity|calmodulin binding|microtubule binding|protein binding|protein kinase C binding|SH2 domain binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4						ATCTCCAGGTCGCCCATGCCG	0.567													41	69					0	0	1	0	0
CUX2	23316	broad.mit.edu	37	12	111776115	111776115	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:111776115C>T	uc001tsa.1	+	20	3375	c.3222C>T	c.(3220-3222)ATC>ATT	p.I1074I		NM_015267	NP_056082	O14529	CUX2_HUMAN	cut-like 2	1074	CUT 3.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)|breast(1)	6						GGGAAAGCATCCTGGGTCTGA	0.622													25	28					0	0	1	0	0
ALDH2	217	broad.mit.edu	37	12	112237755	112237755	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:112237755G>A	uc001tst.2	+	11	1735	c.1294G>A	c.(1294-1296)GAG>AAG	p.E432K	ALDH2_uc010syi.1_Missense_Mutation_p.E385K|ALDH2_uc009zvy.2_Missense_Mutation_p.E356K	NM_000690	NP_000681	P05091	ALDH2_HUMAN	mitochondrial aldehyde dehydrogenase 2	432					carbohydrate metabolic process|ethanol oxidation|neurotransmitter biosynthetic process|xenobiotic metabolic process	mitochondrial matrix	aldehyde dehydrogenase (NAD) activity|aldehyde dehydrogenase|electron carrier activity			skin(2)|ovary(1)|central_nervous_system(1)	4					Disulfiram(DB00822)|Guanidine(DB00536)|NADH(DB00157)|Nitroglycerin(DB00727)	GACCATAGAGGAGGTTGTTGG	0.572			T	HMGA2	leiomyoma								12	17					0	0	1	0	0
RPH3A	22895	broad.mit.edu	37	12	113332402	113332402	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:113332402G>A	uc010syl.1	+	20	2157	c.1795G>A	c.(1795-1797)GGA>AGA	p.G599R	RPH3A_uc001ttz.2_Missense_Mutation_p.G599R|RPH3A_uc001tty.2_Missense_Mutation_p.G595R|RPH3A_uc009zwe.1_Missense_Mutation_p.G594R|RPH3A_uc010sym.1_Missense_Mutation_p.G550R|RPH3A_uc001tua.2_Missense_Mutation_p.G359R	NM_001143854	NP_001137326	Q9Y2J0	RP3A_HUMAN	rabphilin 3A homolog isoform 1	599	C2 2.				intracellular protein transport	cell junction|synaptic vesicle	Rab GTPase binding|transporter activity|zinc ion binding			ovary(3)|central_nervous_system(2)|skin(2)	7				BRCA - Breast invasive adenocarcinoma(302;0.00453)		ACCGGACATGGGAAAGAAGGC	0.433													13	19					0	0	1	0	0
OAS1	4938	broad.mit.edu	37	12	113346562	113346562	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:113346562C>T	uc001tud.2	+	2	508	c.402C>T	c.(400-402)TTC>TTT	p.F134F	OAS1_uc010syn.1_Silent_p.F133F|OAS1_uc010syo.1_Silent_p.F133F|OAS1_uc001tub.2_Silent_p.F134F|OAS1_uc001tuc.2_Silent_p.F134F|OAS1_uc009zwf.2_Silent_p.F133F	NM_016816	NP_058132	P00973	OAS1_HUMAN	2',5'-oligoadenylate synthetase 1 isoform 1	134	Necessary for binding to dsRNA.				interferon-gamma-mediated signaling pathway|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|type I interferon-mediated signaling pathway	endoplasmic reticulum|microsome|mitochondrion|nucleus	ATP binding|nucleotidyltransferase activity|RNA binding			ovary(2)	2						CGCTCAGCTTCGTACTGAGTT	0.572													35	72					0	0	1	0	0
OAS3	4940	broad.mit.edu	37	12	113405371	113405371	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:113405371C>T	uc001tug.2	+	13	2925	c.2838C>T	c.(2836-2838)ATC>ATT	p.I946I		NM_006187	NP_006178	Q9Y6K5	OAS3_HUMAN	2'-5'oligoadenylate synthetase 3	946	OAS domain 3.				interferon-gamma-mediated signaling pathway|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|type I interferon-mediated signaling pathway	microsome	ATP binding|nucleotidyltransferase activity|RNA binding			central_nervous_system(1)	1						AGAGCCTGATCCGGCTGGTGA	0.567													8	7					0	0	1	0	0
RASAL1	8437	broad.mit.edu	37	12	113545030	113545030	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:113545030C>T	uc001tum.1	-	16	1822	c.1529G>A	c.(1528-1530)GGA>GAA	p.G510E	RASAL1_uc010syp.1_Missense_Mutation_p.G510E|RASAL1_uc001tul.2_Missense_Mutation_p.G510E|RASAL1_uc001tun.1_Missense_Mutation_p.G511E|RASAL1_uc010syq.1_Missense_Mutation_p.G510E|RASAL1_uc001tuo.3_Missense_Mutation_p.G510E|RASAL1_uc010syr.1_3'UTR	NM_004658	NP_004649	O95294	RASL1_HUMAN	RAS protein activator like 1	510	Ras-GAP.				intracellular signal transduction|negative regulation of Ras protein signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	metal ion binding|phospholipid binding|Ras GTPase activator activity			ovary(2)|skin(2)	4						GCCCAGGTTTCCAATGCTCTG	0.612													4	23					0	0	1	0	0
RASAL1	8437	broad.mit.edu	37	12	113554926	113554926	+	Missense_Mutation	SNP	T	G	G			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:113554926T>G	uc001tum.1	-	9	976	c.683A>C	c.(682-684)AAA>ACA	p.K228T	RASAL1_uc010syp.1_Missense_Mutation_p.K228T|RASAL1_uc001tul.2_Missense_Mutation_p.K228T|RASAL1_uc001tun.1_Missense_Mutation_p.K228T|RASAL1_uc010syq.1_Missense_Mutation_p.K228T|RASAL1_uc001tuo.3_Missense_Mutation_p.K228T|RASAL1_uc010syr.1_Missense_Mutation_p.K228T	NM_004658	NP_004649	O95294	RASL1_HUMAN	RAS protein activator like 1	228					intracellular signal transduction|negative regulation of Ras protein signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	metal ion binding|phospholipid binding|Ras GTPase activator activity			ovary(2)|skin(2)	4						GAACCAGCCTTTAGGTGGCTT	0.637													17	27					0	0	1	0	0
NOS1	4842	broad.mit.edu	37	12	117665447	117665447	+	Splice_Site	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:117665447C>T	uc001twm.1	-	23	4092	c.3406_splice	c.e23-1	p.G1136_splice		NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal						multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	CCTGCAAACCCTGTGCCAAGG	0.547													19	24					0	0	1	0	0
NOS1	4842	broad.mit.edu	37	12	117691461	117691461	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:117691461C>T	uc001twm.1	-	17	3316	c.2630G>A	c.(2629-2631)GGA>GAA	p.G877E	NOS1_uc001twn.1_Missense_Mutation_p.G81E	NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	877	Flavodoxin-like.				multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	GGCCAGGGGTCCAGCACTCTC	0.557													38	45					0	0	1	0	0
NOS1	4842	broad.mit.edu	37	12	117710192	117710192	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:117710192C>T	uc001twm.1	-	10	2523	c.1837G>A	c.(1837-1839)GAG>AAG	p.E613K		NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	613					multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	GCCCTTACCTCCAGGATATTG	0.597													17	59					0	0	1	0	0
KSR2	283455	broad.mit.edu	37	12	118199232	118199232	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:118199232C>T	uc001two.2	-	4	538	c.483G>A	c.(481-483)TGG>TGA	p.W161*		NM_173598	NP_775869	Q6VAB6	KSR2_HUMAN	kinase suppressor of ras 2	190	Pro-rich.				intracellular signal transduction	cytoplasm|membrane	ATP binding|metal ion binding|protein serine/threonine kinase activity			lung(10)|central_nervous_system(2)|stomach(1)|large_intestine(1)|breast(1)	15	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					GGGTGCGGATCCACGGGGTGG	0.647													14	39					0	0	1	0	0
SRRM4	84530	broad.mit.edu	37	12	119583247	119583247	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:119583247C>T	uc001txa.1	+	9	1125	c.833C>T	c.(832-834)TCG>TTG	p.S278L		NM_194286	NP_919262	A7MD48	SRRM4_HUMAN	KIAA1853 protein	278	Ser-rich.				cell differentiation|mRNA processing|nervous system development|regulation of RNA splicing|RNA splicing	nucleus	mRNA binding			ovary(2)	2						CTCACCACCTCGCGAGGACGT	0.607													8	5					0	0	1	0	0
ACADS	35	broad.mit.edu	37	12	121177152	121177152	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:121177152G>A	uc001tza.3	+	10	1258	c.1140G>A	c.(1138-1140)CGG>CGA	p.R380R	ACADS_uc001tzb.3_Silent_p.R261R	NM_000017	NP_000008	P16219	ACADS_HUMAN	short-chain acyl-CoA dehydrogenase precursor	380						mitochondrial matrix	butyryl-CoA dehydrogenase activity			central_nervous_system(2)	2	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)	Lung NSC(355;0.163)			NADH(DB00157)	CGGCAGAGCGGCACTACCGCG	0.647													5	280					0	0	1	0	0
C12orf43	64897	broad.mit.edu	37	12	121454265	121454265	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:121454265T>C	uc001tzh.1	-	1	36	c.13A>G	c.(13-15)AGT>GGT	p.S5G	C12orf43_uc009zxa.1_Missense_Mutation_p.S5G|C12orf43_uc010szo.1_5'UTR|C12orf43_uc010szp.1_Missense_Mutation_p.S5G|C12orf43_uc001tzi.1_Missense_Mutation_p.S5G	NM_022895	NP_075046	Q96C57	CL043_HUMAN	hypothetical protein LOC64897	5											0	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					ACTGTGCCACTGGGCGCCGCC	0.607													66	225					0	0	1	0	0
OASL	8638	broad.mit.edu	37	12	121458607	121458607	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:121458607G>A	uc001tzj.1	-	6	1308	c.1302C>T	c.(1300-1302)ATC>ATT	p.I434I	OASL_uc001tzk.1_3'UTR	NM_003733	NP_003724	Q15646	OASL_HUMAN	2'-5'-oligoadenylate synthetase-like isoform a	434	Ubiquitin-like 2.				interferon-gamma-mediated signaling pathway|type I interferon-mediated signaling pathway	cytoplasm|nucleolus	ATP binding|DNA binding|double-stranded RNA binding|thyroid hormone receptor binding|transferase activity			skin(1)	1	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					CGAAGACCTGGATCTCGGAGG	0.542													27	172					0	0	1	0	0
OASL	8638	broad.mit.edu	37	12	121458628	121458628	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:121458628C>T	uc001tzj.1	-	6	1287	c.1281G>A	c.(1279-1281)CTG>CTA	p.L427L	OASL_uc001tzk.1_3'UTR	NM_003733	NP_003724	Q15646	OASL_HUMAN	2'-5'-oligoadenylate synthetase-like isoform a	427	Ubiquitin-like 1.				interferon-gamma-mediated signaling pathway|type I interferon-mediated signaling pathway	cytoplasm|nucleolus	ATP binding|DNA binding|double-stranded RNA binding|thyroid hormone receptor binding|transferase activity			skin(1)	1	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					GGATGGTCTCCAGCAGATAGA	0.547													35	181					0	0	1	0	0
BCL7A	605	broad.mit.edu	37	12	122481813	122481813	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:122481813C>T	uc001ubp.2	+	4	430	c.293C>T	c.(292-294)TCC>TTC	p.S98F	BCL7A_uc001ubo.2_Missense_Mutation_p.S98F	NM_001024808	NP_001019979	Q4VC05	BCL7A_HUMAN	B-cell CLL/lymphoma 7A isoform b	98					negative regulation of transcription, DNA-dependent					ovary(1)|lung(1)	2	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000202)|Epithelial(86;0.000386)|BRCA - Breast invasive adenocarcinoma(302;0.231)		AACCAGAGCTCCATCGCAGAT	0.612			T	MYC	BNHL								48	71					0	0	1	0	0
MPHOSPH9	10198	broad.mit.edu	37	12	123641384	123641384	+	Silent	SNP	G	A	A	rs145873046		TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:123641384G>A	uc001uel.2	-	20	3173	c.3066C>T	c.(3064-3066)TTC>TTT	p.F1022F	MPHOSPH9_uc010tal.1_Silent_p.F476F|MPHOSPH9_uc010tam.1_RNA|MPHOSPH9_uc001uem.2_Silent_p.F476F	NM_022782	NP_073619	Q99550	MPP9_HUMAN	M-phase phosphoprotein 9	1022	Potential.				M phase of mitotic cell cycle	centriole|Golgi membrane					0	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000182)|Epithelial(86;0.00046)|BRCA - Breast invasive adenocarcinoma(302;0.169)		GCAAAACATGGAATTTCTTTA	0.368													10	21					0	0	1	0	0
ULK1	8408	broad.mit.edu	37	12	132405729	132405729	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:132405729G>A	uc001uje.2	+	27	3314	c.3046G>A	c.(3046-3048)GGG>AGG	p.G1016R		NM_003565	NP_003556	O75385	ULK1_HUMAN	Unc-51-like kinase 1	1016					autophagy|protein localization|regulation of autophagy	autophagic vacuole|cytosol|pre-autophagosomal structure|ULK1-ATG13-FIP200 complex	ATP binding|protein complex binding|protein serine/threonine kinase activity			ovary(1)|lung(1)|central_nervous_system(1)|skin(1)	4	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.07e-08)|Epithelial(86;2.56e-07)|all cancers(50;3.01e-07)		GCTCCTGGAGGGGCTGCAGCA	0.677													18	30					0	0	1	0	0
GALNT9	50614	broad.mit.edu	37	12	132688193	132688193	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:132688193G>A	uc001ukc.3	-	7	1236	c.1120C>T	c.(1120-1122)CGC>TGC	p.R374C	GALNT9_uc009zyr.2_Missense_Mutation_p.R148C|GALNT9_uc001ukb.2_Missense_Mutation_p.R231C|GALNT9_uc001uka.2_Missense_Mutation_p.R8C	NM_001122636	NP_001116108	Q9HCQ5	GALT9_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	374	Catalytic subdomain B.|Lumenal (Potential).				protein O-linked glycosylation	Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding				0	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.241)		OV - Ovarian serous cystadenocarcinoma(86;7.49e-08)|Epithelial(86;3.55e-07)|all cancers(50;2.09e-05)		TGGGCCACGCGGGAGCAGGGC	0.682													14	44					0	0	1	0	0
LOC284232	284232	broad.mit.edu	37	13	19412009	19412009	+	RNA	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr13:19412009G>A	uc010tcj.1	-	1		c.34101C>T				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						CTATACAGACGACATTAGCCT	0.378													22	29					0	0	1	0	0
LOC284232	284232	broad.mit.edu	37	13	19415720	19415720	+	RNA	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr13:19415720G>A	uc010tcj.1	-	1		c.30390C>T				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						AGTTTCTTGGGAAATTGCTGA	0.294													12	50					0	0	1	0	0
TUBA3C	7278	broad.mit.edu	37	13	19751592	19751592	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr13:19751592G>A	uc009zzj.2	-	4	580	c.531C>T	c.(529-531)GTC>GTT	p.V177V		NM_006001	NP_005992	Q13748	TBA3C_HUMAN	tubulin, alpha 3c	177					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|protein binding|structural molecule activity			ovary(3)|skin(2)	5		all_cancers(29;1.31e-20)|all_epithelial(30;1.59e-20)|all_lung(29;6.91e-20)|Lung NSC(5;9.25e-17)|Hepatocellular(1;0.0207)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;6.78e-06)|Epithelial(112;3.79e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00172)|Lung(94;0.0186)|LUSC - Lung squamous cell carcinoma(192;0.108)		CGGCCGTGGAGACCTGGGGGG	0.562													55	123					0	0	1	0	0
TUBA3C	7278	broad.mit.edu	37	13	19753556	19753556	+	Missense_Mutation	SNP	T	G	G			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr13:19753556T>G	uc009zzj.2	-	2	200	c.151A>C	c.(151-153)ACG>CCG	p.T51P		NM_006001	NP_005992	Q13748	TBA3C_HUMAN	tubulin, alpha 3c	51					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|protein binding|structural molecule activity			ovary(3)|skin(2)	5		all_cancers(29;1.31e-20)|all_epithelial(30;1.59e-20)|all_lung(29;6.91e-20)|Lung NSC(5;9.25e-17)|Hepatocellular(1;0.0207)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;6.78e-06)|Epithelial(112;3.79e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00172)|Lung(94;0.0186)|LUSC - Lung squamous cell carcinoma(192;0.108)		CTGAAGAACGTGTTGAAGGAG	0.562													35	82					0	0	1	0	0
TPTE2	93492	broad.mit.edu	37	13	20048166	20048166	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr13:20048166C>T	uc001umd.2	-	7	491	c.280G>A	c.(280-282)GAC>AAC	p.D94N	TPTE2_uc009zzk.2_Intron|TPTE2_uc009zzl.2_Intron|TPTE2_uc001ume.2_Missense_Mutation_p.D57N|TPTE2_uc009zzm.2_5'UTR|TPTE2_uc010tcm.1_RNA	NM_199254	NP_954863	Q6XPS3	TPTE2_HUMAN	TPTE and PTEN homologous inositol lipid	94						endoplasmic reticulum membrane|integral to membrane	ion channel activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity				0		all_cancers(29;1.23e-20)|all_lung(29;1.97e-20)|all_epithelial(30;5.86e-20)|Lung NSC(5;3.36e-17)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;1.73e-05)|Epithelial(112;7.42e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.000785)|Lung(94;0.0176)|LUSC - Lung squamous cell carcinoma(192;0.089)		AAAATTAGGTCGGCAAGGAGG	0.299													29	60					0	0	1	0	0
C1QTNF9B	387911	broad.mit.edu	37	13	24465876	24465876	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr13:24465876C>T	uc010tcw.1	-	3	554	c.554G>A	c.(553-555)GGA>GAA	p.G185E	MIPEP_uc001uox.3_5'Flank|PCOTH_uc001uoy.2_Missense_Mutation_p.P44S|PCOTH_uc009zzx.2_Missense_Mutation_p.P53S|C1QTNF9B_uc010tcv.1_Intron|C1QTNF9B_uc001uoz.1_Intron|C1QTNF9B_uc010tcx.1_Missense_Mutation_p.G185E	NM_001007537	NP_001007538	B2RNN3	C1T9B_HUMAN	C1q and tumor necrosis factor related protein 9B	185	Collagen-like 3.					collagen					0						TCCTCGATCTCCTTTCCAGCC	0.567													15	69					0	0	1	0	0
C1QTNF9	338872	broad.mit.edu	37	13	24895839	24895839	+	Missense_Mutation	SNP	A	C	C			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr13:24895839A>C	uc001upj.2	+	4	996	c.935A>C	c.(934-936)AAT>ACT	p.N312T	C1QTNF9_uc001upe.2_RNA	NM_178540	NP_848635	P0C862	C1T9A_HUMAN	C1q and tumor necrosis factor related protein 9	312	C1q.					collagen	hormone activity				0		all_cancers(29;3.55e-20)|all_epithelial(30;4.25e-17)|all_lung(29;1.04e-16)|Lung SC(185;0.0225)|Breast(139;0.052)		all cancers(112;0.00565)|Epithelial(112;0.027)|OV - Ovarian serous cystadenocarcinoma(117;0.115)|Lung(94;0.159)		GAGAGGTTCAATGGCTTGTTT	0.547													39	69					0	0	1	0	0
RNF17	56163	broad.mit.edu	37	13	25367434	25367434	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr13:25367434G>A	uc001upr.2	+	10	1231	c.1190G>A	c.(1189-1191)GGA>GAA	p.G397E	RNF17_uc010tdd.1_Missense_Mutation_p.G256E|RNF17_uc010aab.2_RNA|RNF17_uc010tde.1_Missense_Mutation_p.G397E|RNF17_uc001ups.2_Missense_Mutation_p.G336E|RNF17_uc001upq.1_Missense_Mutation_p.G397E	NM_031277	NP_112567	Q9BXT8	RNF17_HUMAN	ring finger protein 17	397					multicellular organismal development	cytoplasm|nucleus	hydrolase activity, acting on ester bonds|nucleic acid binding|zinc ion binding			ovary(1)|skin(1)	2		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0114)|OV - Ovarian serous cystadenocarcinoma(117;0.0311)|Epithelial(112;0.0524)		CCTCAGATGGGATCTAGCCCT	0.383													60	127					0	0	1	0	0
RNF6	6049	broad.mit.edu	37	13	26788680	26788680	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr13:26788680G>A	uc001uqo.2	-	5	1630	c.1339C>T	c.(1339-1341)CGT>TGT	p.R447C	RNF6_uc001uqn.1_Intron|RNF6_uc010aak.2_Missense_Mutation_p.R447C|RNF6_uc001uqp.2_Missense_Mutation_p.R447C|RNF6_uc001uqq.2_Missense_Mutation_p.R447C|RNF6_uc010tdk.1_Missense_Mutation_p.R91C	NM_183044	NP_898865	Q9Y252	RNF6_HUMAN	ring finger protein 6	447					negative regulation of axon extension|positive regulation of transcription, DNA-dependent|protein K27-linked ubiquitination|protein K48-linked ubiquitination|protein K6-linked ubiquitination|regulation of androgen receptor signaling pathway|ubiquitin-dependent protein catabolic process	axon|cytoplasm|PML body	androgen receptor binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|skin(1)	2	Colorectal(5;0.000442)	Lung SC(185;0.0156)|Breast(139;0.147)		all cancers(112;0.00893)|Epithelial(112;0.0481)|OV - Ovarian serous cystadenocarcinoma(117;0.148)|GBM - Glioblastoma multiforme(144;0.23)|Lung(94;0.245)		CGCTCTAAACGAGAAATGGTT	0.443													27	93					0	0	1	0	0
FLT3	2322	broad.mit.edu	37	13	28624343	28624343	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr13:28624343G>A	uc001urw.2	-	6	713	c.631C>T	c.(631-633)CCA>TCA	p.P211S	FLT3_uc010aao.2_RNA|FLT3_uc010tdn.1_Missense_Mutation_p.P211S	NM_004119	NP_004110	P36888	FLT3_HUMAN	fms-related tyrosine kinase 3 precursor	211	Extracellular (Potential).				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|vascular endothelial growth factor receptor activity			haematopoietic_and_lymphoid_tissue(8536)|lung(7)|ovary(3)|stomach(1)|central_nervous_system(1)|skin(1)	8549	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0156)|Ovarian(182;0.0392)	Colorectal(13;0.000157)|READ - Rectum adenocarcinoma(15;0.105)	OV - Ovarian serous cystadenocarcinoma(117;0.00154)|all cancers(112;0.00459)|GBM - Glioblastoma multiforme(144;0.00562)|Epithelial(112;0.0959)|Lung(94;0.212)	Sorafenib(DB00398)|Sunitinib(DB01268)	ACAACAGCTGGACTTTCTTCT	0.393			Mis|O		AML|ALL								19	32					0	0	1	0	0
FLT3	2322	broad.mit.edu	37	13	28644644	28644644	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr13:28644644G>A	uc001urw.2	-	2	231	c.149C>T	c.(148-150)TCA>TTA	p.S50L	FLT3_uc010aao.2_RNA|FLT3_uc010tdn.1_Missense_Mutation_p.S50L	NM_004119	NP_004110	P36888	FLT3_HUMAN	fms-related tyrosine kinase 3 precursor	50	Extracellular (Potential).				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|vascular endothelial growth factor receptor activity			haematopoietic_and_lymphoid_tissue(8536)|lung(7)|ovary(3)|stomach(1)|central_nervous_system(1)|skin(1)	8549	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0156)|Ovarian(182;0.0392)	Colorectal(13;0.000157)|READ - Rectum adenocarcinoma(15;0.105)	OV - Ovarian serous cystadenocarcinoma(117;0.00154)|all cancers(112;0.00459)|GBM - Glioblastoma multiforme(144;0.00562)|Epithelial(112;0.0959)|Lung(94;0.212)	Sorafenib(DB00398)|Sunitinib(DB01268)	ATATGATGATGACTTCCCCAC	0.328			Mis|O		AML|ALL								13	41					0	0	1	0	0
MTUS2	23281	broad.mit.edu	37	13	29599346	29599346	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr13:29599346G>A	uc001usl.3	+	1	599	c.541G>A	c.(541-543)GAA>AAA	p.E181K		NM_001033602	NP_001028774	Q5JR59	MTUS2_HUMAN	hypothetical protein LOC23281 isoform a	171						cytoplasm|microtubule	microtubule binding|protein homodimerization activity				0						TGACAATGAGGAACTGAGGAG	0.532													33	72					0	0	1	0	0
NBEA	26960	broad.mit.edu	37	13	35733730	35733730	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr13:35733730A>G	uc001uvb.2	+	23	3628	c.3422A>G	c.(3421-3423)AAT>AGT	p.N1141S	NBEA_uc010abi.2_5'Flank	NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	1141						cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		GACCTTCCCAATAGTAGTACA	0.333													6	14					0	0	1	0	0
TRPC4	7223	broad.mit.edu	37	13	38211501	38211501	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr13:38211501C>T	uc001uws.2	-	11	2708	c.2473G>A	c.(2473-2475)GTT>ATT	p.V825I	TRPC4_uc010abv.2_Missense_Mutation_p.V405I|TRPC4_uc001uwt.2_Intron|TRPC4_uc010tey.1_Intron|TRPC4_uc010abw.2_Missense_Mutation_p.V652I|TRPC4_uc010abx.2_Missense_Mutation_p.V830I|TRPC4_uc010aby.2_Intron	NM_016179	NP_057263	Q9UBN4	TRPC4_HUMAN	transient receptor potential cation channel,	825	Binds to ITPR1, ITPR2 and ITPR3.|Cytoplasmic (Potential).				axon guidance|calcium ion import	basolateral plasma membrane|calcium channel complex|cell surface|cortical cytoskeleton	beta-catenin binding|cadherin binding|store-operated calcium channel activity			ovary(3)|skin(2)|breast(1)	6				all cancers(112;1.92e-08)|Epithelial(112;5.04e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000677)|GBM - Glioblastoma multiforme(144;0.00623)|BRCA - Breast invasive adenocarcinoma(63;0.0126)		GGCTCCTGAACCACCAGGGCA	0.423													17	46					0	0	1	0	0
FREM2	341640	broad.mit.edu	37	13	39263580	39263580	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr13:39263580C>T	uc001uwv.2	+	1	2408	c.2099C>T	c.(2098-2100)CCT>CTT	p.P700L		NM_207361	NP_997244	Q5SZK8	FREM2_HUMAN	FRAS1-related extracellular matrix protein 2	700	CSPG 4.|Extracellular (Potential).				cell communication|homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(7)|pancreas(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	11		Lung NSC(96;1.04e-07)|Prostate(109;0.00384)|Breast(139;0.00396)|Lung SC(185;0.0565)|Hepatocellular(188;0.114)		all cancers(112;3.32e-07)|Epithelial(112;1.66e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00154)|BRCA - Breast invasive adenocarcinoma(63;0.00631)|GBM - Glioblastoma multiforme(144;0.0312)		GATCGCCTCCCTCCGGAGCTG	0.552													29	43					0	0	1	0	0
FREM2	341640	broad.mit.edu	37	13	39424321	39424321	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr13:39424321G>A	uc001uwv.2	+	9	6835	c.6526G>A	c.(6526-6528)GAC>AAC	p.D2176N	FREM2_uc001uww.2_Missense_Mutation_p.D262N	NM_207361	NP_997244	Q5SZK8	FREM2_HUMAN	FRAS1-related extracellular matrix protein 2	2176	Extracellular (Potential).|Calx-beta 4.				cell communication|homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(7)|pancreas(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	11		Lung NSC(96;1.04e-07)|Prostate(109;0.00384)|Breast(139;0.00396)|Lung SC(185;0.0565)|Hepatocellular(188;0.114)		all cancers(112;3.32e-07)|Epithelial(112;1.66e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00154)|BRCA - Breast invasive adenocarcinoma(63;0.00631)|GBM - Glioblastoma multiforme(144;0.0312)		GGTGATGATGGACTTTGAAGA	0.453													17	44					0	0	1	0	0
FREM2	341640	broad.mit.edu	37	13	39454829	39454829	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr13:39454829G>A	uc001uwv.2	+	24	9724	c.9415G>A	c.(9415-9417)GAA>AAA	p.E3139K		NM_207361	NP_997244	Q5SZK8	FREM2_HUMAN	FRAS1-related extracellular matrix protein 2	3139	Cytoplasmic (Potential).				cell communication|homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(7)|pancreas(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	11		Lung NSC(96;1.04e-07)|Prostate(109;0.00384)|Breast(139;0.00396)|Lung SC(185;0.0565)|Hepatocellular(188;0.114)		all cancers(112;3.32e-07)|Epithelial(112;1.66e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00154)|BRCA - Breast invasive adenocarcinoma(63;0.00631)|GBM - Glioblastoma multiforme(144;0.0312)		CAGGGGCAAGGAAAGTTTCAG	0.572													17	44					0	0	1	0	0
C13orf23	80209	broad.mit.edu	37	13	39587266	39587266	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr13:39587266G>A	uc001uwy.2	-	11	2996	c.2123C>T	c.(2122-2124)CCT>CTT	p.P708L	C13orf23_uc001uwz.2_Missense_Mutation_p.P686L	NM_025138	NP_079414	Q86XN7	CM023_HUMAN	hypothetical protein LOC80209 isoform 1	708	Ser-rich.									ovary(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)	5		Lung NSC(96;6.01e-07)|Breast(139;0.00394)|Prostate(109;0.00676)|Lung SC(185;0.0548)|Hepatocellular(188;0.114)		all cancers(112;3.7e-08)|Epithelial(112;4.28e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.00114)|BRCA - Breast invasive adenocarcinoma(63;0.00366)|GBM - Glioblastoma multiforme(144;0.0146)		GCCAGTTAAAGGAAAATTGTT	0.473													53	78					0	0	1	0	0
COG6	57511	broad.mit.edu	37	13	40301670	40301670	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr13:40301670T>C	uc001uxh.2	+	18	1911	c.1811T>C	c.(1810-1812)CTA>CCA	p.L604P	COG6_uc001uxi.2_Missense_Mutation_p.L552P|COG6_uc010acb.2_Missense_Mutation_p.L604P	NM_020751	NP_065802	Q9Y2V7	COG6_HUMAN	component of oligomeric golgi complex 6 isoform	604					protein transport	Golgi membrane|Golgi transport complex				kidney(1)|skin(1)	2		Lung NSC(96;0.000124)|Breast(139;0.0199)|Prostate(109;0.0233)|Lung SC(185;0.0367)		all cancers(112;6.03e-09)|Epithelial(112;7e-07)|OV - Ovarian serous cystadenocarcinoma(117;0.00015)|BRCA - Breast invasive adenocarcinoma(63;0.00438)|GBM - Glioblastoma multiforme(144;0.0168)		AACTTTCTTCTAAGTGCCACA	0.308													38	80					0	0	1	0	0
NAA16	79612	broad.mit.edu	37	13	41932591	41932591	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr13:41932591G>A	uc001uyf.2	+	11	1563	c.1239G>A	c.(1237-1239)ATG>ATA	p.M413I	NAA16_uc010tfg.1_RNA|NAA16_uc001uye.3_Missense_Mutation_p.M413I|NAA16_uc001uyd.3_3'UTR	NM_024561	NP_078837	Q6N069	NAA16_HUMAN	NMDA receptor regulated 1-like protein isoform	413	TPR 6.				N-terminal protein amino acid acetylation|positive regulation of transcription, DNA-dependent	cytoplasm|transcription factor complex	binding			central_nervous_system(1)	1						TATTCTATATGAAAGCAAAAA	0.318													19	41					0	0	1	0	0
KIAA0564	23078	broad.mit.edu	37	13	42264332	42264332	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr13:42264332G>A	uc001uyj.2	-	33	4016	c.3946C>T	c.(3946-3948)CCG>TCG	p.P1316S		NM_015058	NP_055873	A3KMH1	K0564_HUMAN	hypothetical protein LOC23078 isoform a	1316						extracellular region	ATP binding|ATPase activity			ovary(3)|upper_aerodigestive_tract(1)|kidney(1)|skin(1)	6		Lung NSC(96;4.61e-06)|Prostate(109;0.0167)|Lung SC(185;0.0262)|Breast(139;0.0854)|Hepatocellular(98;0.114)		OV - Ovarian serous cystadenocarcinoma(117;0.000368)|GBM - Glioblastoma multiforme(144;0.0033)|BRCA - Breast invasive adenocarcinoma(63;0.0969)		GTGCTGGGCGGCTCCTCTTTC	0.428													28	51					0	0	1	0	0
TPT1	7178	broad.mit.edu	37	13	45912886	45912886	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr13:45912886G>A	uc001uzy.1	-	5	518	c.425C>T	c.(424-426)CCA>CTA	p.P142L	TPT1_uc001uzz.1_Missense_Mutation_p.P108L|SNORA31_uc001vaa.1_5'Flank|LOC100190939_uc010tfr.1_5'Flank|LOC100190939_uc001vac.2_5'Flank	NM_003295	NP_003286	P13693	TCTP_HUMAN	tumor protein, translationally-controlled 1	142					anti-apoptosis|response to virus	extracellular space|multivesicular body	calcium ion binding|protein binding				0		Lung NSC(96;0.00227)|Prostate(109;0.00578)|Breast(56;0.0192)|Lung SC(185;0.0367)|Hepatocellular(98;0.0556)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;0.000232)		CATGCCATCTGGATTCATGTT	0.353													16	43					0	0	1	0	0
EBPL	84650	broad.mit.edu	37	13	50235109	50235109	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr13:50235109G>A	uc001vdg.2	-	4	679	c.616C>T	c.(616-618)CAG>TAG	p.Q206*	EBPL_uc001vdh.2_RNA|EBPL_uc001vdi.2_3'UTR	NM_032565	NP_115954	Q9BY08	EBPL_HUMAN	emopamil binding related protein, delta8-delta7	206					sterol metabolic process	endoplasmic reticulum membrane|integral to membrane	cholestenol delta-isomerase activity				0		Lung NSC(96;0.000468)|Breast(56;0.0011)|Prostate(109;0.00243)|Hepatocellular(98;0.0556)|Glioma(44;0.236)		GBM - Glioblastoma multiforme(99;2.06e-09)		AAAGTTCACTGAAACTTCTTC	0.388													23	44					0	0	1	0	0
LOC220429	220429	broad.mit.edu	37	13	50466716	50466716	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr13:50466716G>A	uc001vdk.2	+	1	2172	c.1990G>A	c.(1990-1992)GAT>AAT	p.D664N		NR_003268				Homo sapiens CTAGE family, member 5 pseudogene, mRNA (cDNA clone IMAGE:5270026).												0						CAGTGGAAATGATACCAAAGA	0.438													55	107					0	0	1	0	0
SERPINE3	647174	broad.mit.edu	37	13	51922375	51922375	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr13:51922375C>T	uc001vfh.2	+	4	787	c.727C>T	c.(727-729)CAG>TAG	p.Q243*	SERPINE3_uc010tgp.1_Nonsense_Mutation_p.Q243*	NM_001101320	NP_001094790	A8MV23	SERP3_HUMAN	nexin-related serine protease inhibitor	243					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)	2						TGCAGGCCATCAGGTGGGGGT	0.597													6	4					0	0	1	0	0
PCDH17	27253	broad.mit.edu	37	13	58240870	58240870	+	Missense_Mutation	SNP	T	G	G			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr13:58240870T>G	uc001vhq.1	+	3	3592	c.2700T>G	c.(2698-2700)AGT>AGG	p.S900R	PCDH17_uc010aec.1_Missense_Mutation_p.S899R|PCDH17_uc001vhr.1_5'UTR	NM_001040429	NP_001035519	O14917	PCD17_HUMAN	protocadherin 17 precursor	900	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			ovary(3)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	7		Lung NSC(96;0.027)|Prostate(109;0.0453)|Breast(118;0.128)|Hepatocellular(98;0.132)		GBM - Glioblastoma multiforme(99;1.06e-05)		AGGCTGACAGTGACCAAGACA	0.463													25	52					0	0	1	0	0
PCDH17	27253	broad.mit.edu	37	13	58298797	58298797	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr13:58298797C>T	uc001vhq.1	+	4	3741	c.2849C>T	c.(2848-2850)TCT>TTT	p.S950F	PCDH17_uc010aec.1_Missense_Mutation_p.S949F|PCDH17_uc001vhr.1_Missense_Mutation_p.S39F	NM_001040429	NP_001035519	O14917	PCD17_HUMAN	protocadherin 17 precursor	950	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			ovary(3)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	7		Lung NSC(96;0.027)|Prostate(109;0.0453)|Breast(118;0.128)|Hepatocellular(98;0.132)		GBM - Glioblastoma multiforme(99;1.06e-05)		CTTGGTCATTCTGACAGGTGC	0.423													32	26					0	0	1	0	0
PCDH9	5101	broad.mit.edu	37	13	67801775	67801775	+	Silent	SNP	G	C	C	rs143472326	by1000genomes	TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr13:67801775G>C	uc001vik.2	-	2	1490	c.798C>G	c.(796-798)CCC>CCG	p.P266P	PCDH9_uc001vil.2_Silent_p.P266P|PCDH9_uc010thl.1_Silent_p.P266P|PCDH9_uc001vin.3_Silent_p.P266P	NM_203487	NP_982354	Q9HC56	PCDH9_HUMAN	protocadherin 9 isoform 1 precursor	266	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)|skin(1)	6		Hepatocellular(98;0.0906)|Breast(118;0.107)		GBM - Glioblastoma multiforme(99;0.00819)		AGGTACCTACGGGAGCATTCT	0.493													19	71					0	0	1	0	0
DACH1	1602	broad.mit.edu	37	13	72063173	72063173	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr13:72063173G>A	uc010thn.1	-	8	2101	c.1678C>T	c.(1678-1680)CCT>TCT	p.P560S	DACH1_uc010tho.1_Missense_Mutation_p.P412S|DACH1_uc010thp.1_Missense_Mutation_p.P358S	NM_080759	NP_542937	Q9UI36	DACH1_HUMAN	dachshund homolog 1 isoform a	612					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus	DNA binding|nucleotide binding|protein binding			breast(1)	1		Acute lymphoblastic leukemia(28;0.0503)|Breast(118;0.198)		GBM - Glioblastoma multiforme(99;0.00032)		AGTCCATCAGGAAACAGAAAA	0.463													49	174					0	0	1	0	0
LOC647288	647288	broad.mit.edu	37	13	75814259	75814259	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr13:75814259C>T	uc010ths.1	-	1	259	c.218G>A	c.(217-219)GGA>GAA	p.G73E		NR_027466				Homo sapiens mRNA; cDNA DKFZp434F0327 (from clone DKFZp434F0327).												0						TTTCTCTCTTCCCACATAAAG	0.368													25	52					0	0	1	0	0
LMO7	4008	broad.mit.edu	37	13	76393554	76393554	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr13:76393554G>A	uc001vjv.2	+	10	2151	c.1391G>A	c.(1390-1392)CGA>CAA	p.R464Q	LMO7_uc010thv.1_Missense_Mutation_p.R415Q|LMO7_uc001vjt.1_Missense_Mutation_p.R363Q|LMO7_uc010thw.1_Missense_Mutation_p.R314Q|LMO7_uc001vjw.1_Missense_Mutation_p.R370Q	NM_015842	NP_056667	Q8WWI1	LMO7_HUMAN	LIM domain only 7 isoform 2	749						cytoplasm|nucleus|ubiquitin ligase complex	ubiquitin-protein ligase activity|zinc ion binding			large_intestine(2)|ovary(1)|prostate(1)|skin(1)	5		Breast(118;0.0992)		GBM - Glioblastoma multiforme(99;0.0109)		AAAGATCGTCGAAAAAGTTAC	0.408													30	39					0	0	1	0	0
SLITRK6	84189	broad.mit.edu	37	13	86370121	86370121	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr13:86370121G>A	uc001vll.1	-	2	982	c.523C>T	c.(523-525)CTT>TTT	p.L175F	SLITRK6_uc010afe.1_5'Flank	NM_032229	NP_115605	Q9H5Y7	SLIK6_HUMAN	slit and trk like 6 precursor	175	LRR 4.|Extracellular (Potential).					integral to membrane				large_intestine(1)|ovary(1)|central_nervous_system(1)	3	all_neural(89;0.117)|Medulloblastoma(90;0.163)			GBM - Glioblastoma multiforme(99;0.0456)		TTTGGAGGAAGACTCTCAATA	0.368													41	77					0	0	1	0	0
UGGT2	55757	broad.mit.edu	37	13	96599352	96599352	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr13:96599352C>T	uc001vmt.2	-	15	1786	c.1616G>A	c.(1615-1617)CGA>CAA	p.R539Q		NM_020121	NP_064506	Q9NYU1	UGGG2_HUMAN	UDP-glucose ceramide glucosyltransferase-like 2	539					post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine	endoplasmic reticulum lumen|ER-Golgi intermediate compartment	UDP-glucose:glycoprotein glucosyltransferase activity			ovary(2)|central_nervous_system(1)	3						GTTGAAAGCTCGCCAGAGAGC	0.343													16	85					0	0	1	0	0
IPO5	3843	broad.mit.edu	37	13	98673359	98673359	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr13:98673359G>C	uc001vne.2	+	28	3413	c.3233G>C	c.(3232-3234)CGT>CCT	p.R1078P		NM_002271	NP_002262	O00410	IPO5_HUMAN	importin 5	1060					interspecies interaction between organisms|NLS-bearing substrate import into nucleus|ribosomal protein import into nucleus	cytoplasm|nuclear pore|nucleolus	GTPase inhibitor activity|protein transporter activity|Ran GTPase binding			ovary(1)|lung(1)|skin(1)	3						TGTGCCAAACGTCTGGCCAAT	0.418													60	109					0	0	1	0	0
DOCK9	23348	broad.mit.edu	37	13	99535332	99535332	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr13:99535332G>A	uc001vnt.2	-	23	2581	c.2526C>T	c.(2524-2526)GCC>GCT	p.A842A	DOCK9_uc001vnw.2_Silent_p.A841A|DOCK9_uc001vnv.1_RNA|DOCK9_uc010tir.1_Silent_p.A842A|DOCK9_uc010tis.1_Silent_p.A841A|DOCK9_uc010tit.1_Silent_p.A842A|DOCK9_uc010afu.1_Silent_p.A688A	NM_015296	NP_056111	Q9BZ29	DOCK9_HUMAN	dedicator of cytokinesis 9 isoform a	842	DHR-1.				blood coagulation	cytosol|endomembrane system|membrane	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			central_nervous_system(1)	1	all_neural(89;0.101)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)					CTAAGGCTTGGGCTCCAGATT	0.378													16	27					0	0	1	0	0
SLC10A2	6555	broad.mit.edu	37	13	103718370	103718370	+	Missense_Mutation	SNP	C	T	T	rs143297386	byFrequency	TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr13:103718370C>T	uc001vpy.3	-	1	827	c.230G>A	c.(229-231)GGA>GAA	p.G77E		NM_000452	NP_000443	Q12908	NTCP2_HUMAN	solute carrier family 10 (sodium/bile acid	77	Cytoplasmic (Potential).				bile acid metabolic process|organic anion transport	integral to plasma membrane	bile acid:sodium symporter activity			ovary(3)|skin(1)	4	all_neural(89;0.0662)|Medulloblastoma(90;0.163)|Lung SC(71;0.211)					GGGCATGATTCCAAACTGACA	0.522													35	73					0	0	1	0	0
SLC10A2	6555	broad.mit.edu	37	13	103718592	103718592	+	Missense_Mutation	SNP	T	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr13:103718592T>A	uc001vpy.3	-	1	605	c.8A>T	c.(7-9)GAT>GTT	p.D3V		NM_000452	NP_000443	Q12908	NTCP2_HUMAN	solute carrier family 10 (sodium/bile acid	3	Extracellular (Potential).				bile acid metabolic process|organic anion transport	integral to plasma membrane	bile acid:sodium symporter activity			ovary(3)|skin(1)	4	all_neural(89;0.0662)|Medulloblastoma(90;0.163)|Lung SC(71;0.211)					GCTGTTCGGATCATTCATTGC	0.512													31	61					0	0	1	0	0
CARKD	55739	broad.mit.edu	37	13	111290825	111290825	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr13:111290825G>A	uc001vrb.2	+	10	1008	c.994G>A	c.(994-996)GAC>AAC	p.D332N	CARKD_uc010tjj.1_Missense_Mutation_p.D314N|CARKD_uc001vqz.2_RNA|CARKD_uc001vra.2_RNA|CARKD_uc010tjk.1_Missense_Mutation_p.D222N|CARKD_uc010tjl.1_Missense_Mutation_p.D201N|CARKD_uc001vrc.2_Missense_Mutation_p.R377Q			Q8IW45	CARKD_HUMAN	RecName: Full=Carbohydrate kinase domain-containing protein; Flags: Precursor;	332	YjeF C-terminal.									skin(1)	1						CACCACCTCCGACATGATCGC	0.637													38	49					0	0	1	0	0
FAM70B	348013	broad.mit.edu	37	13	114469087	114469087	+	Splice_Site	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr13:114469087G>A	uc001vuh.2	+	2	74	c.47_splice	c.e2-1	p.E16_splice	FAM70B_uc010tkh.1_Splice_Site_p.E16_splice	NM_182614	NP_872420	Q8WV15	FA70B_HUMAN	family with sequence similarity 70, member B							integral to membrane					0	Lung NSC(43;0.00976)|all_neural(89;0.0337)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_lung(25;0.123)|all_epithelial(44;0.133)	all cancers(43;0.181)			CCTCCCCACAGAAGGGCTTTC	0.652													33	55					0	0	1	0	0
POTEG	404785	broad.mit.edu	37	14	19553689	19553689	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr14:19553689G>A	uc001vuz.1	+	1	325	c.273G>A	c.(271-273)ATG>ATA	p.M91I	POTEG_uc001vva.1_RNA|POTEG_uc010ahc.1_RNA	NM_001005356	NP_001005356	Q6S5H5	POTEG_HUMAN	POTE ankyrin domain family, member G	91										ovary(1)	1						ACTCTGCTATGAAGACACTCA	0.622													20	502					0	0	1	0	0
P704P	641455	broad.mit.edu	37	14	20019948	20019948	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr14:20019948C>T	uc001vwc.3	-	1	325	c.273G>A	c.(271-273)ATG>ATA	p.M91I	P704P_uc001vwb.3_RNA	NM_001145442	NP_001138914	A6NI47	POTEM_HUMAN	prostate-specific P704P	91											0						TGAGTGTCTTCATAGCAGAGT	0.632													48	135					0	0	1	0	0
OR4Q3	441669	broad.mit.edu	37	14	20216253	20216253	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr14:20216253C>T	uc010tkt.1	+	1	667	c.667C>T	c.(667-669)CTG>TTG	p.L223L		NM_172194	NP_751944	Q8NH05	OR4Q3_HUMAN	olfactory receptor, family 4, subfamily Q,	223	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(3)	3	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		TGCTATCATCCTGATCACCCT	0.507													10	105					0	0	1	0	0
OR4N2	390429	broad.mit.edu	37	14	20295729	20295729	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr14:20295729G>A	uc010tkv.1	+	1	122	c.122G>A	c.(121-123)GGA>GAA	p.G41E		NM_001004723	NP_001004723	Q8NGD1	OR4N2_HUMAN	olfactory receptor, family 4, subfamily N,	41	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		ATCCTCCCTGGAAATTTTCTC	0.448													86	316					0	0	1	0	0
OR4N2	390429	broad.mit.edu	37	14	20295941	20295941	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr14:20295941G>A	uc010tkv.1	+	1	334	c.334G>A	c.(334-336)GGA>AGA	p.G112R		NM_001004723	NP_001004723	Q8NGD1	OR4N2_HUMAN	olfactory receptor, family 4, subfamily N,	112	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		AGGAGGGGAGGGATTACTCCT	0.512													29	235					0	0	1	0	0
OR4K2	390431	broad.mit.edu	37	14	20344949	20344949	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr14:20344949G>A	uc001vwh.1	+	1	523	c.523G>A	c.(523-525)GAC>AAC	p.D175N		NM_001005501	NP_001005501	Q8NGD2	OR4K2_HUMAN	olfactory receptor, family 4, subfamily K,	175	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		CTATGAGGTAGACAGCTTTTT	0.458													50	531					0	0	1	0	0
OR4K5	79317	broad.mit.edu	37	14	20389599	20389599	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr14:20389599C>G	uc010tkw.1	+	1	834	c.834C>G	c.(832-834)TTC>TTG	p.F278L		NM_001005483	NP_001005483	Q8NGD3	OR4K5_HUMAN	olfactory receptor, family 4, subfamily K,	278	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		ACACTGTTTTCACCCCCGTCC	0.393													38	166					0	0	1	0	0
OR4K13	390433	broad.mit.edu	37	14	20502478	20502478	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr14:20502478G>A	uc010tkz.1	-	1	440	c.440C>T	c.(439-441)TCC>TTC	p.S147F		NM_001004714	NP_001004714	Q8NH42	OR4KD_HUMAN	olfactory receptor, family 4, subfamily K,	147	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	all_cancers(95;0.00108)		Epithelial(56;4.65e-07)|all cancers(55;2.9e-06)	GBM - Glioblastoma multiforme(265;0.0064)		TGCATAGGAGGATAACAGTAG	0.463													19	126					0	0	1	0	0
OR6S1	341799	broad.mit.edu	37	14	21109317	21109317	+	Silent	SNP	C	T	T	rs61743445		TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr14:21109317C>T	uc001vxv.1	-	1	534	c.534G>A	c.(532-534)CAG>CAA	p.Q178Q		NM_001001968	NP_001001968	Q8NH40	OR6S1_HUMAN	olfactory receptor, family 6, subfamily S,	178	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00304)		Epithelial(56;1.23e-06)|all cancers(55;1.01e-05)	GBM - Glioblastoma multiforme(265;0.0135)		AGAAGAAGTGCTGTACCACAG	0.597													13	45					0	0	1	0	0
OR6S1	341799	broad.mit.edu	37	14	21109520	21109520	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr14:21109520C>T	uc001vxv.1	-	1	331	c.331G>A	c.(331-333)GCC>ACC	p.A111T		NM_001001968	NP_001001968	Q8NH40	OR6S1_HUMAN	olfactory receptor, family 6, subfamily S,	111	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00304)		Epithelial(56;1.23e-06)|all cancers(55;1.01e-05)	GBM - Glioblastoma multiforme(265;0.0135)		AACTCGGAGGCCCCGAGAAAG	0.493													13	54					0	0	1	0	0
CHD8	57680	broad.mit.edu	37	14	21897229	21897229	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr14:21897229G>A	uc001was.1	-	3	366	c.272C>T	c.(271-273)ACC>ATC	p.T91I	CHD8_uc001war.1_5'UTR	NM_020920	NP_065971	Q9HCK8	CHD8_HUMAN	chromodomain helicase DNA binding protein 8	370	Gln-rich.				ATP-dependent chromatin remodeling|canonical Wnt receptor signaling pathway|negative regulation of transcription, DNA-dependent|negative regulation of Wnt receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase III promoter|transcription, DNA-dependent	MLL1 complex	ATP binding|beta-catenin binding|DNA binding|DNA helicase activity|DNA-dependent ATPase activity|methylated histone residue binding|p53 binding			ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|breast(1)|skin(1)	10	all_cancers(95;0.00121)		Epithelial(56;2.55e-06)|all cancers(55;1.73e-05)	GBM - Glioblastoma multiforme(265;0.00424)		CACTGGCTGGGTGGAGGGTGG	0.542													15	126					0	0	1	0	0
Unknown	0	broad.mit.edu	37	14	22180858	22180858	+	RNA	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr14:22180858G>A	uc010tme.1	+	3		c.177G>A			uc001wbm.2_Missense_Mutation_p.E44K					Homo sapiens mRNA for T cell receptor alpha variable 2, partial cds, clone: SEB 280.																		AGCTGTGGTGGAAATCTTCTG	0.458													59	70					0	0	1	0	0
NYNRIN	57523	broad.mit.edu	37	14	24878674	24878674	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr14:24878674C>T	uc001wpf.3	+	4	1992	c.1674C>T	c.(1672-1674)CCC>CCT	p.P558P		NM_025081	NP_079357	Q9P2P1	NYNRI_HUMAN	hypothetical protein LOC57523	558					DNA integration	integral to membrane	DNA binding			ovary(2)|central_nervous_system(1)	3						CTGAAAATCCCTCCAGAACTC	0.552													3	20					0	0	1	0	0
CLEC14A	161198	broad.mit.edu	37	14	38723923	38723923	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr14:38723923C>T	uc001wum.1	-	1	1652	c.1305G>A	c.(1303-1305)AAG>AAA	p.K435K		NM_175060	NP_778230	Q86T13	CLC14_HUMAN	C-type lectin domain family 14, member A	435	Cytoplasmic (Potential).					integral to membrane	sugar binding			ovary(3)|skin(1)	4	Hepatocellular(127;0.213)|Esophageal squamous(585;0.22)		Lung(238;3.93e-06)|LUAD - Lung adenocarcinoma(48;2.62e-05)|Epithelial(34;0.187)	GBM - Glioblastoma multiforme(112;0.00439)		CCATAGACTCCTTCCTTGGCT	0.557													17	33					0	0	1	0	0
MDGA2	161357	broad.mit.edu	37	14	47504306	47504306	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr14:47504306C>T	uc001wwj.3	-	8	1716	c.1520G>A	c.(1519-1521)AGG>AAG	p.R507K	MDGA2_uc001wwi.3_Missense_Mutation_p.R278K|MDGA2_uc010ani.2_Missense_Mutation_p.R67K	NM_001113498	NP_001106970	Q7Z553	MDGA2_HUMAN	MAM domain containing 1 isoform 1	507	Ig-like 5.				spinal cord motor neuron differentiation	anchored to membrane|plasma membrane				ovary(4)|large_intestine(1)|pancreas(1)	6						TGACATTTCCCTAGATACATT	0.423													14	73					0	0	1	0	0
GNG2	54331	broad.mit.edu	37	14	52433399	52433399	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr14:52433399C>T	uc001wzi.2	+	4	739	c.210C>T	c.(208-210)ATC>ATT	p.I70I	GNG2_uc001wzh.2_RNA|GNG2_uc010aoc.1_RNA|GNG2_uc001wzj.2_RNA|GNG2_uc001wzk.2_Silent_p.I70I	NM_053064	NP_444292	P59768	GBG2_HUMAN	guanine nucleotide binding protein (G protein),	70					cellular response to glucagon stimulus|energy reserve metabolic process|platelet activation|synaptic transmission	heterotrimeric G-protein complex	protein binding|signal transducer activity				0	all_epithelial(31;0.0659)|Breast(41;0.0684)				Halothane(DB01159)	TCTGTGCCATCCTTTAAGTCT	0.512													36	48					0	0	1	0	0
NID2	22795	broad.mit.edu	37	14	52520438	52520438	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr14:52520438G>A	uc001wzo.2	-	5	1522	c.1288C>T	c.(1288-1290)CCT>TCT	p.P430S	NID2_uc010tqs.1_Missense_Mutation_p.P430S|NID2_uc010tqt.1_Missense_Mutation_p.P430S|NID2_uc001wzp.2_Missense_Mutation_p.P430S	NM_007361	NP_031387	Q14112	NID2_HUMAN	nidogen 2 precursor	430						basement membrane	calcium ion binding|collagen binding			pancreas(2)|breast(2)|ovary(1)|liver(1)|skin(1)	7	Breast(41;0.0639)|all_epithelial(31;0.123)					ATTTCCGAAGGCACTGGCCCT	0.537													15	61					0	0	1	0	0
PTGDR	5729	broad.mit.edu	37	14	52734926	52734926	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr14:52734926C>T	uc001wzq.2	+	1	496	c.394C>T	c.(394-396)CTC>TTC	p.L132F		NM_000953	NP_000944	Q13258	PD2R_HUMAN	prostaglandin D2 receptor	132	Cytoplasmic (Potential).					integral to membrane|plasma membrane	prostaglandin D receptor activity|protein binding			ovary(1)|lung(1)|central_nervous_system(1)|skin(1)	4	Breast(41;0.0639)|all_epithelial(31;0.0887)				Nedocromil(DB00716)	GGAGTGCTGGCTCTCCCTAGG	0.622													48	60					0	0	1	0	0
KIAA0831	22863	broad.mit.edu	37	14	55878504	55878504	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr14:55878504C>T	uc001xbx.1	-	1	73	c.37G>A	c.(37-39)GAG>AAG	p.E13K	FBXO34_uc001xbv.2_Intron	NM_014924	NP_055739	Q6ZNE5	BAKOR_HUMAN	Barkor	13					autophagic vacuole assembly|positive regulation of autophagy	autophagic vacuole|endoplasmic reticulum|pre-autophagosomal structure membrane	protein binding				0						CCAGGAGCCTCCAGCGCCCGG	0.687													3	14					0	0	1	0	0
C14orf37	145407	broad.mit.edu	37	14	58605671	58605671	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr14:58605671G>A	uc001xdc.2	-	2	517	c.406C>T	c.(406-408)CCT>TCT	p.P136S	C14orf37_uc010tro.1_Missense_Mutation_p.P174S|C14orf37_uc001xdd.2_Missense_Mutation_p.P136S|C14orf37_uc001xde.2_Missense_Mutation_p.P136S	NM_001001872	NP_001001872	Q86TY3	CN037_HUMAN	hypothetical protein LOC145407 precursor	136	Extracellular (Potential).					integral to membrane	binding				0						CCACTTTCAGGAGATATTCTC	0.483													16	27					0	0	1	0	0
ARID4A	5926	broad.mit.edu	37	14	58768329	58768329	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr14:58768329G>A	uc001xdp.2	+	3	292	c.38G>A	c.(37-39)GGA>GAA	p.G13E	ARID4A_uc010apf.1_RNA|ARID4A_uc001xdo.2_Missense_Mutation_p.G13E|ARID4A_uc001xdq.2_Missense_Mutation_p.G13E	NM_002892	NP_002883	P29374	ARI4A_HUMAN	retinoblastoma-binding protein 1 isoform I	13					negative regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	transcriptional repressor complex	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)|lung(1)	6						CTGACAGTGGGAACCGATGTC	0.448													23	30					0	0	1	0	0
DACT1	51339	broad.mit.edu	37	14	59113795	59113795	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr14:59113795C>T	uc001xdw.2	+	4	2618	c.2454C>T	c.(2452-2454)CTC>CTT	p.L818L	DACT1_uc010trv.1_Silent_p.L537L|DACT1_uc001xdx.2_Silent_p.L781L|DACT1_uc010trw.1_Silent_p.L537L	NM_016651	NP_057735	Q9NYF0	DACT1_HUMAN	dapper 1 isoform 1	818					multicellular organismal development|Wnt receptor signaling pathway	cytoplasm|nucleus				large_intestine(2)|lung(2)|ovary(1)	5						CACATAACCTCAAGAAGAAGA	0.458													16	101					0	0	1	0	0
KCNH5	27133	broad.mit.edu	37	14	63246607	63246607	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr14:63246607C>T	uc001xfx.2	-	10	1909	c.1858G>A	c.(1858-1860)GAA>AAA	p.E620K	KCNH5_uc001xfy.2_Intron|KCNH5_uc001xfz.1_Missense_Mutation_p.E562K	NM_139318	NP_647479	Q8NCM2	KCNH5_HUMAN	potassium voltage-gated channel, subfamily H,	620	cNMP.|Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	calmodulin binding|two-component sensor activity|voltage-gated potassium channel activity			ovary(4)|skin(4)|central_nervous_system(1)	9				OV - Ovarian serous cystadenocarcinoma(108;0.00958)|BRCA - Breast invasive adenocarcinoma(234;0.168)		AGGGTGGTTTCCTTCCAGAAG	0.433													17	13					0	0	1	0	0
KCNH5	27133	broad.mit.edu	37	14	63453898	63453898	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr14:63453898C>T	uc001xfx.2	-	5	492	c.441G>A	c.(439-441)ACG>ACA	p.T147T	KCNH5_uc001xfy.2_Silent_p.T147T|KCNH5_uc001xfz.1_Silent_p.T89T|KCNH5_uc001xga.2_Silent_p.T89T	NM_139318	NP_647479	Q8NCM2	KCNH5_HUMAN	potassium voltage-gated channel, subfamily H,	147	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	calmodulin binding|two-component sensor activity|voltage-gated potassium channel activity			ovary(4)|skin(4)|central_nervous_system(1)	9				OV - Ovarian serous cystadenocarcinoma(108;0.00958)|BRCA - Breast invasive adenocarcinoma(234;0.168)		GGGCAAATTTCGTCCAACCTT	0.388													14	68					0	0	1	0	0
ZFYVE26	23503	broad.mit.edu	37	14	68215353	68215353	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr14:68215353G>A	uc001xka.2	-	42	7559	c.7420C>T	c.(7420-7422)CGG>TGG	p.R2474W	ZFYVE26_uc010tsz.1_RNA	NM_015346	NP_056161	Q68DK2	ZFY26_HUMAN	zinc finger, FYVE domain containing 26	2474					cell cycle|cell death|cytokinesis|double-strand break repair via homologous recombination	centrosome|midbody	metal ion binding|phosphatidylinositol-3-phosphate binding|protein binding			ovary(9)|breast(2)	11				all cancers(60;0.000763)|OV - Ovarian serous cystadenocarcinoma(108;0.0011)|BRCA - Breast invasive adenocarcinoma(234;0.0115)		AGGTAGGCCCGAACCTGGCAG	0.532													4	24					0	0	1	0	0
EXD2	55218	broad.mit.edu	37	14	69704381	69704381	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr14:69704381C>T	uc001xkt.2	+	10	1666	c.1007C>T	c.(1006-1008)TCC>TTC	p.S336F	EXD2_uc001xku.2_Missense_Mutation_p.S206F|EXD2_uc001xkv.2_Missense_Mutation_p.S461F|EXD2_uc001xkw.2_Missense_Mutation_p.S336F|EXD2_uc010aqt.2_Missense_Mutation_p.S461F|EXD2_uc010tte.1_Missense_Mutation_p.S461F|EXD2_uc001xky.2_Missense_Mutation_p.S336F	NM_018199	NP_060669	Q9NVH0	EXD2_HUMAN	exonuclease 3'-5' domain containing 2	336					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	intracellular	3'-5' exonuclease activity|nucleic acid binding				0						CTCTGCACCTCCTGCCATGCC	0.567													14	14					0	0	1	0	0
SLC8A3	6547	broad.mit.edu	37	14	70633493	70633493	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr14:70633493C>T	uc001xly.2	-	2	2401	c.1647G>A	c.(1645-1647)GAG>GAA	p.E549E	SLC8A3_uc001xlw.2_Silent_p.E549E|SLC8A3_uc001xlx.2_Silent_p.E549E|SLC8A3_uc001xlz.2_Silent_p.E549E|SLC8A3_uc010ara.2_RNA	NM_183002	NP_892114	P57103	NAC3_HUMAN	solute carrier family 8 (sodium/calcium	549	Calx-beta 2.|Cytoplasmic (Potential).				cell communication|platelet activation	integral to membrane|plasma membrane	calcium:sodium antiporter activity|calmodulin binding			skin(3)|ovary(2)|breast(2)	7				BRCA - Breast invasive adenocarcinoma(234;0.0079)|all cancers(60;0.0102)|OV - Ovarian serous cystadenocarcinoma(108;0.0555)		GAACCTTGACCTCCATAACAC	0.498													29	29					0	0	1	0	0
SLC8A3	6547	broad.mit.edu	37	14	70634273	70634273	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr14:70634273C>T	uc001xly.2	-	2	1621	c.867G>A	c.(865-867)GGG>GGA	p.G289G	SLC8A3_uc001xlw.2_Silent_p.G289G|SLC8A3_uc001xlx.2_Silent_p.G289G|SLC8A3_uc001xlz.2_Silent_p.G289G|SLC8A3_uc010ara.2_RNA	NM_183002	NP_892114	P57103	NAC3_HUMAN	solute carrier family 8 (sodium/calcium	289	Cytoplasmic (Potential).				cell communication|platelet activation	integral to membrane|plasma membrane	calcium:sodium antiporter activity|calmodulin binding			skin(3)|ovary(2)|breast(2)	7				BRCA - Breast invasive adenocarcinoma(234;0.0079)|all cancers(60;0.0102)|OV - Ovarian serous cystadenocarcinoma(108;0.0555)		TCATCATTTTCCCATCCATCT	0.473													21	19					0	0	1	0	0
C14orf169	79697	broad.mit.edu	37	14	73958627	73958627	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr14:73958627G>A	uc001xok.1	+	3	985	c.906G>A	c.(904-906)CAG>CAA	p.Q302Q	HEATR4_uc010tua.1_Intron	NM_024644	NP_078920	Q9H6W3	NO66_HUMAN	chromosome 14 open reading frame 169	302	JmjC.				negative regulation of osteoblast differentiation|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus|nucleoplasm	histone demethylase activity (H3-K36 specific)|histone demethylase activity (H3-K4 specific)|iron ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen				0				BRCA - Breast invasive adenocarcinoma(234;0.0033)|OV - Ovarian serous cystadenocarcinoma(108;0.215)		TCTGTCCGCAGGCTTTCTCTA	0.642													8	10					0	0	1	0	0
ACOT6	641372	broad.mit.edu	37	14	74086379	74086379	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr14:74086379C>T	uc001xop.2	+	2	791	c.460C>T	c.(460-462)CCT>TCT	p.P154S		NM_001037162	NP_001032239	Q3I5F7	ACOT6_HUMAN	acyl-CoA thioesterase 6	154						cytosol	carboxylesterase activity				0				BRCA - Breast invasive adenocarcinoma(234;0.00331)		ACCTTATTTTCCTCCTTCTAG	0.483													8	49					0	0	1	0	0
VSX2	338917	broad.mit.edu	37	14	74726430	74726430	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr14:74726430C>T	uc001xpq.2	+	4	795	c.705C>T	c.(703-705)TCC>TCT	p.S235S		NM_182894	NP_878314	P58304	VSX2_HUMAN	visual system homeobox 2	235	CVC.				multicellular organismal development|response to stimulus|visual perception	nucleolus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.00154)		TGCCCGAGTCCATCCTCAAGT	0.652													29	28					0	0	1	0	0
C14orf115	55237	broad.mit.edu	37	14	74825332	74825332	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr14:74825332C>T	uc001xpw.3	+	2	2037	c.1846C>T	c.(1846-1848)CAG>TAG	p.Q616*		NM_018228	NP_060698	Q9H8Y1	VRTN_HUMAN	hypothetical protein LOC55237	616					transposition, DNA-mediated		DNA binding|transposase activity				0				BRCA - Breast invasive adenocarcinoma(234;0.00147)		GGCCACAGCCCAGGGCCAGCC	0.657													6	25					0	0	1	0	0
ZDHHC22	283576	broad.mit.edu	37	14	77605822	77605822	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr14:77605822G>A	uc010asp.2	-	2	463	c.260C>T	c.(259-261)ACT>ATT	p.T87I		NM_174976	NP_777636	Q8N966	ZDH22_HUMAN	zinc finger, DHHC domain containing 22	87	DHHC-type.					integral to membrane	acyltransferase activity|zinc ion binding				0			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0277)		GGGGCATGGAGTCTTCCTGGC	0.622													8	5					0	0	1	0	0
NRXN3	9369	broad.mit.edu	37	14	79175815	79175815	+	Missense_Mutation	SNP	G	A	A	rs148371115		TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr14:79175815G>A	uc001xun.2	+	4	849	c.358G>A	c.(358-360)GAG>AAG	p.E120K	NRXN3_uc001xum.1_RNA|NRXN3_uc010asv.1_Missense_Mutation_p.E254K	NM_004796	NP_004787	Q9Y4C0	NRX3A_HUMAN	neurexin 3 isoform 1 precursor	493	Extracellular (Potential).|Laminin G-like 3.				axon guidance|cell adhesion	integral to plasma membrane	metal ion binding|receptor activity	p.E120K(1)		ovary(3)|upper_aerodigestive_tract(2)|pancreas(2)|central_nervous_system(1)|breast(1)|skin(1)	10		Renal(4;0.00876)		BRCA - Breast invasive adenocarcinoma(234;0.00544)|Kidney(3;0.029)|KIRC - Kidney renal clear cell carcinoma(182;0.223)		AAAGCCCCAAGAGAGGAAGGA	0.522													10	95					0	0	1	0	0
ZC3H14	79882	broad.mit.edu	37	14	89039230	89039230	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr14:89039230T>C	uc001xww.2	+	6	965	c.740T>C	c.(739-741)CTT>CCT	p.L247P	ZC3H14_uc010twd.1_Missense_Mutation_p.L247P|ZC3H14_uc010twe.1_Missense_Mutation_p.L247P|ZC3H14_uc001xwx.2_Missense_Mutation_p.L247P|ZC3H14_uc010twf.1_Missense_Mutation_p.L92P|ZC3H14_uc001xwy.2_Missense_Mutation_p.L213P|ZC3H14_uc010twg.1_Missense_Mutation_p.L92P|ZC3H14_uc001xxa.2_5'Flank	NM_024824	NP_079100	Q6PJT7	ZC3HE_HUMAN	zinc finger CCCH-type containing 14 isoform 1	247						cytoplasm|cytoplasm|nuclear speck	protein binding|RNA binding|zinc ion binding			ovary(2)|skin(1)	3						GCCAAGCAGCTTGATATGCAG	0.403													14	78					0	0	1	0	0
CCDC88C	440193	broad.mit.edu	37	14	91755456	91755456	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr14:91755456C>T	uc010aty.2	-	25	4533	c.4434G>A	c.(4432-4434)GTG>GTA	p.V1478V		NM_001080414	NP_001073883	Q9P219	DAPLE_HUMAN	DVL-binding protein DAPLE	1478					microtubule cytoskeleton organization|protein destabilization|protein homooligomerization|regulation of protein phosphorylation|Wnt receptor signaling pathway	cytoplasm|insoluble fraction	microtubule binding|PDZ domain binding|protein self-association			ovary(3)	3		all_cancers(154;0.0468)				TACCTTTCCCCACAGACCCGT	0.687													10	17					0	0	1	0	0
CATSPERB	79820	broad.mit.edu	37	14	92174488	92174488	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr14:92174488G>A	uc001xzs.1	-	6	603	c.463C>T	c.(463-465)CGA>TGA	p.R155*		NM_024764	NP_079040	Q9H7T0	CTSRB_HUMAN	cation channel, sperm-associated, beta	155					cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				breast(2)|skin(2)|ovary(1)	5		all_cancers(154;0.0663)|all_epithelial(191;0.236)				CATTTACCTCGAATAACATCC	0.234													14	37					0	0	1	0	0
TC2N	123036	broad.mit.edu	37	14	92278801	92278801	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr14:92278801C>T	uc001xzu.3	-	3	347	c.156G>A	c.(154-156)AAG>AAA	p.K52K	TC2N_uc001xzt.3_Silent_p.K52K|TC2N_uc010auc.2_Silent_p.K52K|TC2N_uc001xzv.3_Silent_p.K52K	NM_001128595	NP_001122067	Q8N9U0	TAC2N_HUMAN	tandem C2 domains, nuclear	52						nucleus				upper_aerodigestive_tract(1)	1				COAD - Colon adenocarcinoma(157;0.218)		CAAGCTGAGGCTTTACAGAAA	0.378													20	14					0	0	1	0	0
TRIP11	9321	broad.mit.edu	37	14	92470030	92470030	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr14:92470030G>A	uc001xzy.2	-	11	5078	c.4290C>T	c.(4288-4290)TTC>TTT	p.F1430F	TRIP11_uc010auf.1_Silent_p.F1166F	NM_004239	NP_004230	Q15643	TRIPB_HUMAN	thyroid hormone receptor interactor 11	1430	Potential.				transcription from RNA polymerase II promoter	cytoskeleton|Golgi apparatus|membrane|nucleus	protein binding|transcription coactivator activity			ovary(6)|skin(2)|kidney(2)|central_nervous_system(1)|lung(1)|breast(1)	13				COAD - Colon adenocarcinoma(157;0.223)		CTTTGTTAGTGAAATTTTCAT	0.338			T	PDGFRB	AML								28	33					0	0	1	0	0
KIAA1409	57578	broad.mit.edu	37	14	94007139	94007139	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr14:94007139G>A	uc001ybv.1	+	10	1038	c.955G>A	c.(955-957)GAT>AAT	p.D319N	KIAA1409_uc001ybs.1_Missense_Mutation_p.D319N|KIAA1409_uc001ybu.1_Missense_Mutation_p.D257N	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	496						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		TGATAAACACGATCAGAGGCT	0.438													37	34					0	0	1	0	0
PPP4R4	57718	broad.mit.edu	37	14	94708237	94708237	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr14:94708237C>T	uc001ycs.1	+	10	1243	c.1089C>T	c.(1087-1089)ATC>ATT	p.I363I		NM_058237	NP_478144	Q6NUP7	PP4R4_HUMAN	HEAT-like repeat-containing protein isoform 1	363						cytoplasm|protein serine/threonine phosphatase complex	protein binding			skin(3)|upper_aerodigestive_tract(1)	4						CACCCCAAATCCTAGAGCAGG	0.318													13	18					0	0	1	0	0
SERPINA11	256394	broad.mit.edu	37	14	94914801	94914801	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr14:94914801C>T	uc001ydd.1	-	2	371	c.311G>A	c.(310-312)GGA>GAA	p.G104E		NM_001080451	NP_001073920	Q86U17	SPA11_HUMAN	serpin peptidase inhibitor, clade A (alpha-1	104					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			kidney(1)	1				COAD - Colon adenocarcinoma(157;0.211)		GAGGTTGAATCCCAGGCCCTC	0.587													40	36					0	0	1	0	0
SERPINA4	5267	broad.mit.edu	37	14	95030165	95030165	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr14:95030165G>A	uc001ydk.2	+	2	412	c.346G>A	c.(346-348)GAT>AAT	p.D116N	SERPINA4_uc010avd.2_Missense_Mutation_p.D153N|SERPINA4_uc001ydl.2_Missense_Mutation_p.D116N	NM_006215	NP_006206	P29622	KAIN_HUMAN	serine (or cysteine) proteinase inhibitor, clade	116					regulation of proteolysis	extracellular space	serine-type endopeptidase inhibitor activity			ovary(3)|skin(1)	4				COAD - Colon adenocarcinoma(157;0.211)		GTCTGAGTCCGATGTCCATAG	0.637													31	35					0	0	1	0	0
SERPINA5	5104	broad.mit.edu	37	14	95057106	95057107	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr14:95057106_95057107CC>TT	uc001ydm.2	+	5	1121_1122	c.911_912CC>TT	c.(910-912)CCC>CTT	p.P304L	SERPINA3_uc001ydo.3_5'Flank	NM_000624	NP_000615	P05154	IPSP_HUMAN	serine (or cysteine) proteinase inhibitor, clade	304					fusion of sperm to egg plasma membrane|regulation of proteolysis|spermatogenesis	extracellular region|membrane|protein complex	acrosin binding|heparin binding|protease binding|serine-type endopeptidase inhibitor activity			ovary(2)	2				COAD - Colon adenocarcinoma(157;0.21)	Drotrecogin alfa(DB00055)|Urokinase(DB00013)	CTTTACCTTCCCAAATTCTCCA	0.525													27	30					0	0	1	0	0
TCL6	27004	broad.mit.edu	37	14	96129881	96129881	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr14:96129881C>T	uc001yeq.2	+	4	1569	c.100C>T	c.(100-102)CAT>TAT	p.H34Y	TCL6_uc001yep.1_RNA|TCL6_uc001yes.2_5'UTR|TCL6_uc001yet.1_5'UTR|TCL6_uc001yeu.2_5'UTR|TCL6_uc001yev.2_5'UTR|TCL1B_uc001yew.2_RNA|TCL1B_uc001yex.2_RNA|TCL1B_uc010avj.2_RNA	NM_020554	NP_065579			SubName: Full=T-cell leukemia/lymphoma 6 ORF163;												0		all_cancers(154;0.103)		Epithelial(152;0.0655)|all cancers(159;0.149)|BRCA - Breast invasive adenocarcinoma(234;0.206)|COAD - Colon adenocarcinoma(157;0.207)		cacctgtttTCATGCTATCTC	0.259			T	TRA@	T-ALL								19	19					0	0	1	0	0
BCL11B	64919	broad.mit.edu	37	14	99641880	99641880	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr14:99641880G>A	uc001yga.2	-	4	1560	c.1293C>T	c.(1291-1293)TTC>TTT	p.F431F	BCL11B_uc001ygb.2_Silent_p.F360F	NM_138576	NP_612808	Q9C0K0	BC11B_HUMAN	B-cell CLL/lymphoma 11B isoform 1	431	C2H2-type 2.					nucleus	zinc ion binding			central_nervous_system(8)|large_intestine(1)|lung(1)	10		Melanoma(154;0.0866)|all_epithelial(191;0.241)		COAD - Colon adenocarcinoma(157;0.103)		TCTTGCCGCAGAACTCGCACG	0.682			T	TLX3	T-ALL								10	23					0	0	1	0	0
DYNC1H1	1778	broad.mit.edu	37	14	102495968	102495968	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr14:102495968C>T	uc001yks.2	+	49	9725	c.9561C>T	c.(9559-9561)TTC>TTT	p.F3187F		NM_001376	NP_001367	Q14204	DYHC1_HUMAN	cytoplasmic dynein 1 heavy chain 1	3187					cytoplasmic mRNA processing body assembly|G2/M transition of mitotic cell cycle|microtubule-based movement|mitotic spindle organization|stress granule assembly|transport	centrosome|cytoplasmic dynein complex|cytosol|Golgi apparatus|microtubule	ATP binding|ATPase activity, coupled|microtubule motor activity|protein binding			ovary(7)|central_nervous_system(2)|pancreas(1)	10						CCAACCTGTTCCACGAGAAGC	0.562													9	42					0	0	1	0	0
KIF26A	26153	broad.mit.edu	37	14	104642587	104642587	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr14:104642587G>A	uc001yos.3	+	12	3462	c.3462G>A	c.(3460-3462)GGG>GGA	p.G1154G		NM_015656	NP_056471	Q9ULI4	KI26A_HUMAN	kinesin family member 26A	1154					blood coagulation|enteric nervous system development|microtubule-based movement|negative regulation of signal transduction|regulation of cell growth by extracellular stimulus	cytosol|microtubule	ATP binding|microtubule binding|microtubule motor activity			pancreas(1)	1		all_cancers(154;0.109)|Melanoma(154;0.0525)|all_epithelial(191;0.0767)	Epithelial(46;0.152)	Epithelial(152;0.161)		GTTCCCTGGGGGATGGAAGCT	0.711													4	9					0	0	1	0	0
AHNAK2	113146	broad.mit.edu	37	14	105409049	105409049	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr14:105409049C>A	uc010axc.1	-	7	12859	c.12739G>T	c.(12739-12741)GGC>TGC	p.G4247C	AHNAK2_uc001ypx.2_Missense_Mutation_p.G4147C	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	4247						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			GCCTTGGGGCCTTTCAGGTCC	0.647													37	140					3.33393e-15	3.37611e-15	1	1	0
ADAM6	8755	broad.mit.edu	37	14	106110258	106110258	+	RNA	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr14:106110258G>A	uc010tyt.1	-	3642		c.60993C>T			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_RNA					Parts of antibodies, mostly variable regions.												0						GGGGGAAGAGGAAGACTGACG	0.622													17	57					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106714521	106714522	+	RNA	DNP	CC	TT	TT			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr14:106714521_106714522CC>TT	uc010tyt.1	-	645		c.19083_19084GG>AA								Parts of antibodies, mostly variable regions.												0						TGAAACCTACCCATTCCAGCCC	0.515													12	31					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106725652	106725652	+	RNA	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr14:106725652C>T	uc010tyt.1	-	587		c.17996G>A								Parts of antibodies, mostly variable regions.												0						GCCCAAACTCCATGGTGAGTT	0.458													36	41					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106733284	106733284	+	RNA	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr14:106733284C>T	uc010tyt.1	-	547		c.17452G>A								Parts of antibodies, mostly variable regions.												0						TCTTCAGGATCAAAACCTCCC	0.522													45	134					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106963148	106963148	+	RNA	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr14:106963148C>T	uc010tyt.1	-	207		c.9536G>A								Parts of antibodies, mostly variable regions.												0						GAAGGTGTATCCGGAAGCCTT	0.577													17	61					0	0	1	0	0
LOC646214	646214	broad.mit.edu	37	15	21936707	21936707	+	RNA	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr15:21936707G>A	uc010tzj.1	-	1		c.4033C>T				NR_027053				Homo sapiens mRNA for p21-activated kinase 2 variant protein.												0						ATCGATTTAAGAAATCCCGAA	0.398													28	145					0	0	1	0	0
LOC646214	646214	broad.mit.edu	37	15	21937270	21937270	+	RNA	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr15:21937270C>T	uc010tzj.1	-	1		c.3470G>A				NR_027053				Homo sapiens mRNA for p21-activated kinase 2 variant protein.												0						ATGATCAATTCCTTCTTTGGC	0.378													6	96					0	0	1	0	0
LOC646214	646214	broad.mit.edu	37	15	21938111	21938111	+	RNA	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr15:21938111C>T	uc010tzj.1	-	1		c.2629G>A				NR_027053				Homo sapiens mRNA for p21-activated kinase 2 variant protein.												0						TCTTCCAGTTCTCTGTTATCA	0.537													17	191					0	0	1	0	0
TUBGCP5	114791	broad.mit.edu	37	15	22851028	22851028	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr15:22851028C>T	uc001yur.3	+	11	1420	c.1290C>T	c.(1288-1290)GTC>GTT	p.V430V	TUBGCP5_uc001yuq.2_Silent_p.V430V|TUBGCP5_uc010axz.1_Missense_Mutation_p.S2L	NM_052903	NP_443135	Q96RT8	GCP5_HUMAN	tubulin, gamma complex associated protein 5	430					G2/M transition of mitotic cell cycle|microtubule nucleation	centrosome|cytosol|gamma-tubulin ring complex|microtubule|spindle pole	microtubule binding			skin(1)	1		all_cancers(20;2.26e-25)|all_epithelial(15;2.1e-22)|Lung NSC(15;3.36e-17)|all_lung(15;1.04e-16)|Breast(32;0.000776)|Colorectal(260;0.0488)		all cancers(64;2.86e-06)|Epithelial(43;2.63e-05)|BRCA - Breast invasive adenocarcinoma(123;0.000949)		CTCGAAATGTCGTCCGGGCCT	0.483													36	65					0	0	1	0	0
TUBGCP5	114791	broad.mit.edu	37	15	22867488	22867488	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr15:22867488T>C	uc001yur.3	+	19	2694	c.2564T>C	c.(2563-2565)CTT>CCT	p.L855P	TUBGCP5_uc001yuq.2_Missense_Mutation_p.L855P	NM_052903	NP_443135	Q96RT8	GCP5_HUMAN	tubulin, gamma complex associated protein 5	855					G2/M transition of mitotic cell cycle|microtubule nucleation	centrosome|cytosol|gamma-tubulin ring complex|microtubule|spindle pole	microtubule binding			skin(1)	1		all_cancers(20;2.26e-25)|all_epithelial(15;2.1e-22)|Lung NSC(15;3.36e-17)|all_lung(15;1.04e-16)|Breast(32;0.000776)|Colorectal(260;0.0488)		all cancers(64;2.86e-06)|Epithelial(43;2.63e-05)|BRCA - Breast invasive adenocarcinoma(123;0.000949)		AAACCACGACTTAAAGAAGGC	0.433													23	37					0	0	1	0	0
OCA2	4948	broad.mit.edu	37	15	28273074	28273074	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr15:28273074G>A	uc001zbh.3	-	4	568	c.458C>T	c.(457-459)TCC>TTC	p.S153F	OCA2_uc010ayv.2_Missense_Mutation_p.S153F	NM_000275	NP_000266	Q04671	P_HUMAN	oculocutaneous albinism II	153	Cytoplasmic (Potential).				eye pigment biosynthetic process	endoplasmic reticulum membrane|endosome membrane|integral to membrane|lysosomal membrane|melanosome membrane	arsenite transmembrane transporter activity|citrate transmembrane transporter activity|L-tyrosine transmembrane transporter activity|protein binding			ovary(3)|breast(1)|pancreas(1)	5		all_lung(180;2.93e-12)|Breast(32;0.000315)|Colorectal(260;0.234)		all cancers(64;5.03e-07)|Epithelial(43;2.13e-06)|BRCA - Breast invasive adenocarcinoma(123;0.045)		TCCCTTCTCGGAGGAGGCAGA	0.602									Oculocutaneous_Albinism				24	59					0	0	1	0	0
WHAMML2	440253	broad.mit.edu	37	15	28996737	28996737	+	RNA	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr15:28996737G>A	uc010uap.1	+	7		c.1527G>A			WHAMML2_uc010azg.1_RNA|WHAMML2_uc010azh.1_RNA|WHAMML2_uc001zci.1_RNA|WHAMML2_uc010azi.1_RNA	NR_026589				Homo sapiens cDNA FLJ33935 fis, clone CTONG2017910.												0						GGAAGTGAAAGAACTCAGAAG	0.483													2	1					0	0	1	0	0
APBA2	321	broad.mit.edu	37	15	29346534	29346534	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr15:29346534C>T	uc001zck.2	+	3	654	c.447C>T	c.(445-447)CCC>CCT	p.P149P	APBA2_uc010azj.2_Silent_p.P149P|APBA2_uc010uat.1_Silent_p.P149P|APBA2_uc001zcl.2_Silent_p.P149P|APBA2_uc010uas.1_Silent_p.P149P	NM_005503	NP_005494	Q99767	APBA2_HUMAN	amyloid beta A4 precursor protein-binding,	149					nervous system development|protein transport		protein binding				0		all_lung(180;1.73e-12)|Breast(32;2.89e-05)|Colorectal(260;0.234)		all cancers(64;7.44e-11)|Epithelial(43;5.74e-10)|GBM - Glioblastoma multiforme(186;0.026)|BRCA - Breast invasive adenocarcinoma(123;0.0286)|Lung(196;0.24)		GCCCGCACCCCCACGGCCACG	0.667													28	25					0	0	1	0	0
RYR3	6263	broad.mit.edu	37	15	33952586	33952586	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr15:33952586C>T	uc001zhi.2	+	34	4654	c.4584C>T	c.(4582-4584)CCC>CCT	p.P1528P	RYR3_uc010bar.2_Silent_p.P1528P	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	1528	4 X approximate repeats.|Cytoplasmic (By similarity).				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		GCCTGGAGCCCCTGCAGATGA	0.677													4	6					0	0	1	0	0
RYR3	6263	broad.mit.edu	37	15	33954383	33954383	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr15:33954383A>T	uc001zhi.2	+	35	4722	c.4652A>T	c.(4651-4653)CAG>CTG	p.Q1551L	RYR3_uc010bar.2_Missense_Mutation_p.Q1551L	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	1551	4 X approximate repeats.|Cytoplasmic (By similarity).				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		CTCTGTGAGCAGGAGGACCTG	0.602													3	14					0	0	1	0	0
RYR3	6263	broad.mit.edu	37	15	33955849	33955849	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr15:33955849C>T	uc001zhi.2	+	36	5600	c.5530C>T	c.(5530-5532)CGC>TGC	p.R1844C	RYR3_uc010bar.2_Missense_Mutation_p.R1844C	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	1844	4 X approximate repeats.|Cytoplasmic (By similarity).				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		TCAGAAGTTCCGCTACAATGA	0.572													9	17					0	0	1	0	0
RYR3	6263	broad.mit.edu	37	15	34102840	34102840	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr15:34102840G>A	uc001zhi.2	+	71	10257	c.10187G>A	c.(10186-10188)CGA>CAA	p.R3396Q	RYR3_uc010bar.2_Missense_Mutation_p.R3391Q	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	3396					cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		GCAAAATCGCGATACAGCCAT	0.547													19	28					0	0	1	0	0
PGBD4	161779	broad.mit.edu	37	15	34396305	34396305	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr15:34396305C>T	uc001zho.2	+	1	2032	c.1573C>T	c.(1573-1575)CCC>TCC	p.P525S	C15orf24_uc001zhm.2_5'Flank|C15orf24_uc001zhn.2_5'Flank	NM_152595	NP_689808	Q96DM1	PGBD4_HUMAN	piggyBac transposable element derived 4	525											0		all_lung(180;1.76e-08)		all cancers(64;1.22e-17)|GBM - Glioblastoma multiforme(113;1.78e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0242)		AAGACATTTCCCCAAGAGCAT	0.502													18	23					0	0	1	0	0
C15orf55	256646	broad.mit.edu	37	15	34648793	34648793	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr15:34648793G>A	uc001zif.2	+	7	2655	c.2500G>A	c.(2500-2502)GAT>AAT	p.D834N	C15orf55_uc010ucc.1_Missense_Mutation_p.D862N|C15orf55_uc010ucd.1_Missense_Mutation_p.D852N	NM_175741	NP_786883	Q86Y26	NUT_HUMAN	nuclear protein in testis	834						cytoplasm|nucleus			BRD4_ENST00000263377/C15orf55(24)|BRD3/C15orf55(3)	midline_organs(25)|ovary(2)|lung(2)|skin(1)	30		all_lung(180;2.78e-08)		all cancers(64;4.53e-18)|GBM - Glioblastoma multiforme(113;8.29e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0249)		GCATCCCAGTGATCTGTGGGC	0.512			T	BRD3|BRD4	lethal midline carcinoma								15	83					0	0	1	0	0
THBS1	7057	broad.mit.edu	37	15	39881501	39881501	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr15:39881501C>T	uc001zkh.2	+	12	2051	c.1872C>T	c.(1870-1872)TTC>TTT	p.F624F	THBS1_uc010bbi.2_Silent_p.F96F	NM_003246	NP_003237	P07996	TSP1_HUMAN	thrombospondin 1 precursor	624	EGF-like 2; calcium-binding (Potential).				activation of MAPK activity|anti-apoptosis|apoptosis|cell adhesion|cell cycle arrest|cell migration|cellular response to heat|chronic inflammatory response|engulfment of apoptotic cell|immune response|induction of apoptosis|negative regulation of angiogenesis|negative regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|negative regulation of blood vessel endothelial cell migration|negative regulation of caspase activity|negative regulation of cGMP-mediated signaling|negative regulation of dendritic cell antigen processing and presentation|negative regulation of endothelial cell proliferation|negative regulation of fibrinolysis|negative regulation of fibroblast growth factor receptor signaling pathway|negative regulation of focal adhesion assembly|negative regulation of interleukin-12 production|negative regulation of nitric oxide mediated signal transduction|negative regulation of plasma membrane long-chain fatty acid transport|negative regulation of plasminogen activation|peptide cross-linking|platelet activation|platelet degranulation|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of fibroblast migration|positive regulation of macrophage activation|positive regulation of macrophage chemotaxis|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of reactive oxygen species metabolic process|positive regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transforming growth factor-beta1 production|positive regulation of translation|positive regulation of tumor necrosis factor biosynthetic process|response to calcium ion|response to drug|response to glucose stimulus|response to hypoxia|response to magnesium ion|response to progesterone stimulus|sprouting angiogenesis	external side of plasma membrane|extracellular matrix|fibrinogen complex|platelet alpha granule lumen	calcium ion binding|collagen V binding|eukaryotic cell surface binding|fibrinogen binding|fibroblast growth factor 2 binding|fibronectin binding|heparin binding|identical protein binding|integrin binding|laminin binding|low-density lipoprotein particle binding|phosphatidylserine binding|proteoglycan binding|structural molecule activity|transforming growth factor beta binding			ovary(3)|central_nervous_system(3)	6		all_cancers(109;1.35e-17)|all_epithelial(112;2.07e-15)|Lung NSC(122;4.44e-11)|all_lung(180;1.11e-09)|Melanoma(134;0.0574)|Colorectal(260;0.117)|Ovarian(310;0.223)		GBM - Glioblastoma multiforme(113;2.77e-06)|BRCA - Breast invasive adenocarcinoma(123;0.105)	Becaplermin(DB00102)	CCCCACGCTTCACCGGCTCAC	0.587													40	70					0	0	1	0	0
VPS39	23339	broad.mit.edu	37	15	42454643	42454643	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr15:42454643G>A	uc001zpd.2	-	23	2396	c.2245C>T	c.(2245-2247)CCC>TCC	p.P749S	VPS39_uc001zpc.2_Missense_Mutation_p.P738S|VPS39_uc001zpb.2_Missense_Mutation_p.P84S	NM_015289	NP_056104	Q96JC1	VPS39_HUMAN	vacuolar protein sorting 39	749					protein transport	HOPS complex|late endosome membrane|lysosomal membrane	small GTPase regulator activity			ovary(1)|pancreas(1)|skin(1)	3		all_cancers(109;6.78e-16)|all_epithelial(112;1.81e-14)|Lung NSC(122;5.01e-09)|all_lung(180;2.24e-08)|Melanoma(134;0.0574)|Colorectal(260;0.152)		GBM - Glioblastoma multiforme(94;3.05e-06)		TGAATGCTGGGGGGCGACAGG	0.587													15	57					0	0	1	0	0
ZFP106	64397	broad.mit.edu	37	15	42743379	42743379	+	Missense_Mutation	SNP	G	A	A	rs142329440		TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr15:42743379G>A	uc001zpw.2	-	2	1357	c.1022C>T	c.(1021-1023)GCG>GTG	p.A341V	ZFP106_uc001zpu.2_5'Flank|ZFP106_uc001zpv.2_Intron|ZFP106_uc001zpx.2_Intron|ZFP106_uc010udh.1_Missense_Mutation_p.A124V|ZFP106_uc001zpy.1_Missense_Mutation_p.A364V	NM_022473	NP_071918	Q9H2Y7	ZF106_HUMAN	zinc finger protein 106 homolog	341						nucleolus	zinc ion binding			central_nervous_system(2)|ovary(1)	3		all_cancers(109;1.63e-12)|all_epithelial(112;3.97e-11)|Lung NSC(122;2.04e-07)|all_lung(180;8.31e-07)|Melanoma(134;0.091)		GBM - Glioblastoma multiforme(94;8.6e-07)		TTCCCTTGCCGCACTGCCATT	0.468													31	46					0	0	1	0	0
TUBGCP4	27229	broad.mit.edu	37	15	43670089	43670089	+	Silent	SNP	T	C	C			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr15:43670089T>C	uc001zro.2	+	5	669	c.429T>C	c.(427-429)ATT>ATC	p.I143I	TUBGCP4_uc001zrn.2_Silent_p.I143I|TUBGCP4_uc010bdh.2_RNA	NM_014444	NP_055259	Q9UGJ1	GCP4_HUMAN	tubulin, gamma complex associated protein 4	143					G2/M transition of mitotic cell cycle|microtubule nucleation|protein complex assembly	centrosome|cytosol|gamma-tubulin ring complex|microtubule|spindle pole	structural constituent of cytoskeleton			ovary(3)	3		all_cancers(109;1.27e-10)|all_epithelial(112;4.82e-09)|Lung NSC(122;1.72e-06)|all_lung(180;1.59e-05)|Melanoma(134;0.0728)		GBM - Glioblastoma multiforme(94;3.53e-07)		TAGAACAAATTAAAAGTCAAA	0.323													38	65					0	0	1	0	0
CKMT1B	1159	broad.mit.edu	37	15	43891435	43891435	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr15:43891435C>T	uc001zsc.2	+	10	1610	c.1218C>T	c.(1216-1218)ATC>ATT	p.I406I	CKMT1B_uc010uds.1_Silent_p.I437I|CKMT1B_uc001zsd.3_Silent_p.I406I|CKMT1B_uc010bdj.2_RNA	NM_020990	NP_066270	P12532	KCRU_HUMAN	creatine kinase, mitochondrial 1B precursor	406					creatine metabolic process	mitochondrial inner membrane	ATP binding|creatine kinase activity				0		all_cancers(109;1.03e-14)|all_epithelial(112;2.23e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.56e-07)	Creatine(DB00148)	GCCAGGATATCCGCATCCCCA	0.498													45	76					0	0	1	0	0
SLC28A2	9153	broad.mit.edu	37	15	45567648	45567648	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr15:45567648G>A	uc001zva.2	+	18	1979	c.1914G>A	c.(1912-1914)AAG>AAA	p.K638K		NM_004212	NP_004203	O43868	S28A2_HUMAN	solute carrier family 28 (sodium-coupled	638					nucleobase, nucleoside and nucleotide metabolic process	integral to plasma membrane|membrane fraction	nucleoside binding|nucleoside:sodium symporter activity|purine nucleoside transmembrane transporter activity			ovary(4)	4		all_cancers(109;8.53e-07)|all_epithelial(112;1.39e-05)|Lung NSC(122;8.3e-05)|all_lung(180;0.000547)|Melanoma(134;0.0417)		all cancers(107;3.77e-16)|GBM - Glioblastoma multiforme(94;2.71e-06)		GGGAAGATAAGGAGTTCAGTG	0.443													106	165					0	0	1	0	0
SQRDL	58472	broad.mit.edu	37	15	45981326	45981326	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr15:45981326C>T	uc001zvt.2	+	10	1395	c.1206C>T	c.(1204-1206)ACC>ACT	p.T402T	SQRDL_uc001zvu.2_Silent_p.T402T|SQRDL_uc001zvv.2_Silent_p.T402T	NM_021199	NP_067022	Q9Y6N5	SQRD_HUMAN	sulfide dehydrogenase like precursor	402							oxidoreductase activity			ovary(1)	1		Lung NSC(122;0.000117)|all_lung(180;0.000737)|Melanoma(134;0.0417)		all cancers(107;5.89e-18)|GBM - Glioblastoma multiforme(94;1.21e-06)|COAD - Colon adenocarcinoma(120;0.17)|Colorectal(133;0.188)		CGCTAGAAACCTTCCCCTTTG	0.443													46	81					0	0	1	0	0
SLC27A2	11001	broad.mit.edu	37	15	50515328	50515328	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr15:50515328C>T	uc001zxw.2	+	5	1371	c.1139C>T	c.(1138-1140)GCT>GTT	p.A380V	SLC27A2_uc010bes.2_Missense_Mutation_p.A327V|SLC27A2_uc001zxx.2_Missense_Mutation_p.A145V	NM_003645	NP_003636	O14975	S27A2_HUMAN	solute carrier family 27 (fatty acid	380	Cytoplasmic (Potential).				bile acid biosynthetic process|fatty acid alpha-oxidation	endoplasmic reticulum membrane|integral to membrane|peroxisomal matrix|peroxisomal membrane	ATP binding|long-chain fatty acid-CoA ligase activity|phytanate-CoA ligase activity|pristanate-CoA ligase activity			ovary(1)|skin(1)	2		all_lung(180;0.00177)		all cancers(107;1.16e-06)|GBM - Glioblastoma multiforme(94;0.000113)		AAAGTTGGTGCTGTTGGAAGA	0.373													19	44					0	0	1	0	0
SLC27A2	11001	broad.mit.edu	37	15	50519205	50519205	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr15:50519205C>T	uc001zxw.2	+	7	1519	c.1287C>T	c.(1285-1287)ATC>ATT	p.I429I	SLC27A2_uc010bes.2_Silent_p.I376I|SLC27A2_uc001zxx.2_Silent_p.I194I	NM_003645	NP_003636	O14975	S27A2_HUMAN	solute carrier family 27 (fatty acid	429	Cytoplasmic (Potential).				bile acid biosynthetic process|fatty acid alpha-oxidation	endoplasmic reticulum membrane|integral to membrane|peroxisomal matrix|peroxisomal membrane	ATP binding|long-chain fatty acid-CoA ligase activity|phytanate-CoA ligase activity|pristanate-CoA ligase activity			ovary(1)|skin(1)	2		all_lung(180;0.00177)		all cancers(107;1.16e-06)|GBM - Glioblastoma multiforme(94;0.000113)		TTTGCAAAATCACACAACTTA	0.358													5	20					0	0	1	0	0
HDC	3067	broad.mit.edu	37	15	50535170	50535170	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr15:50535170C>T	uc001zxz.2	-	12	1382	c.1276G>A	c.(1276-1278)GAA>AAA	p.E426K	HDC_uc001zxy.2_Missense_Mutation_p.E169K|HDC_uc010uff.1_Missense_Mutation_p.E393K	NM_002112	NP_002103	P19113	DCHS_HUMAN	histidine decarboxylase	426					catecholamine biosynthetic process|histidine metabolic process		histidine decarboxylase activity			large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6		all_lung(180;0.0138)		all cancers(107;1.12e-06)|GBM - Glioblastoma multiforme(94;9.95e-05)	L-Histidine(DB00117)|Pyridoxal Phosphate(DB00114)	TTAGCTATTTCCTTTAACACA	0.473													25	50					0	0	1	0	0
DMXL2	23312	broad.mit.edu	37	15	51837933	51837933	+	Silent	SNP	T	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr15:51837933T>A	uc002abf.2	-	8	1002	c.777A>T	c.(775-777)TCA>TCT	p.S259S	DMXL2_uc010ufy.1_Silent_p.S259S|DMXL2_uc010bfa.2_Silent_p.S259S	NM_015263	NP_056078	Q8TDJ6	DMXL2_HUMAN	Dmx-like 2	259	WD 3.					cell junction|synaptic vesicle membrane	Rab GTPase binding			ovary(6)|skin(3)	9				all cancers(107;0.00494)		CATCATGACATGAAGTTAACA	0.378													46	98					0	0	1	0	0
MYO5C	55930	broad.mit.edu	37	15	52486179	52486179	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr15:52486179G>A	uc010bff.2	-	41	5286	c.5149C>T	c.(5149-5151)CCT>TCT	p.P1717S	GNB5_uc002abt.1_5'Flank|MYO5C_uc010uga.1_RNA|uc002abv.2_Intron	NM_018728	NP_061198	Q9NQX4	MYO5C_HUMAN	myosin VC	1717						myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(7)|central_nervous_system(3)|large_intestine(2)|skin(2)	14				all cancers(107;0.0137)		GGGGTAAAAGGAAATGTGACT	0.418													20	79					0	0	1	0	0
LDHAL6B	92483	broad.mit.edu	37	15	59500176	59500176	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr15:59500176A>G	uc002agb.2	+	1	1135	c.1037A>G	c.(1036-1038)GAG>GGG	p.E346G	MYO1E_uc002aga.2_Intron	NM_033195	NP_149972	Q9BYZ2	LDH6B_HUMAN	lactate dehydrogenase A-like 6B	346					glycolysis	cytoplasm	L-lactate dehydrogenase activity|protein binding				0					NADH(DB00157)	ATCCTGGGAGAGAACGGTATT	0.388													43	76					0	0	1	0	0
DENND4A	10260	broad.mit.edu	37	15	66021917	66021917	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr15:66021917G>A	uc002aph.2	-	10	1644	c.1266C>T	c.(1264-1266)TCC>TCT	p.S422S	DENND4A_uc002api.2_Silent_p.S422S|DENND4A_uc002apj.3_Silent_p.S422S|DENND4A_uc010ujj.1_Silent_p.S422S	NM_005848	NP_005839	Q7Z401	MYCPP_HUMAN	DENN/MADD domain containing 4A isoform 2	422	DENN.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4						ATGGCCGTAGGGAATGGATAA	0.388													4	7					0	0	1	0	0
AAGAB	79719	broad.mit.edu	37	15	67524189	67524189	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr15:67524189C>T	uc002aqk.3	-	5	603	c.498G>A	c.(496-498)CTG>CTA	p.L166L	AAGAB_uc002aql.2_Silent_p.L57L|AAGAB_uc010uju.1_Silent_p.L57L	NM_024666	NP_078942	Q6PD74	AAGAB_HUMAN	alpha- and gamma-adaptin-binding protein p34	166					protein transport	cytoplasm					0						CATTGGCATTCAGGGCTTGGA	0.368													87	154					0	0	1	0	0
IQCH	64799	broad.mit.edu	37	15	67664560	67664560	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr15:67664560G>A	uc002aqo.1	+	9	912	c.865G>A	c.(865-867)GAA>AAA	p.E289K	IQCH_uc010ujv.1_Missense_Mutation_p.E108K|IQCH_uc002aqn.1_Missense_Mutation_p.E116K|IQCH_uc002aqq.1_Missense_Mutation_p.E37K|IQCH_uc002aqp.1_Missense_Mutation_p.E41K	NM_001031715	NP_001026885	Q86VS3	IQCH_HUMAN	IQ motif containing H isoform 1	289										skin(3)|ovary(1)	4				Colorectal(3;0.0856)		AGCATTCAAGGAACATTTTAG	0.388													24	46					0	0	1	0	0
CD276	80381	broad.mit.edu	37	15	73996299	73996299	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr15:73996299C>T	uc002avv.1	+	5	1267	c.1033C>T	c.(1033-1035)CGG>TGG	p.R345W	CD276_uc010bjd.1_Missense_Mutation_p.R199W|CD276_uc002avu.1_Missense_Mutation_p.R345W|CD276_uc002avw.1_Intron|CD276_uc010ulb.1_Missense_Mutation_p.R291W|CD276_uc002avx.2_5'Flank	NM_001024736	NP_001019907	Q5ZPR3	CD276_HUMAN	CD276 antigen isoform a	345	Ig-like V-type 2.|Extracellular (Potential).				cell proliferation|immune response|positive regulation of interferon-gamma biosynthetic process|positive regulation of T cell proliferation|regulation of immune response|T cell activation	external side of plasma membrane|integral to membrane	receptor binding			skin(1)	1						CGTGAGCATCCGGGATTTCGG	0.672													9	22					0	0	1	0	0
CYP1A2	1544	broad.mit.edu	37	15	75044176	75044176	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr15:75044176G>A	uc002ayr.1	+	4	1087	c.1023G>A	c.(1021-1023)AGG>AGA	p.R341R		NM_000761	NP_000752	P05177	CP1A2_HUMAN	cytochrome P450, family 1, subfamily A,	341					alkaloid metabolic process|exogenous drug catabolic process|methylation|monocarboxylic acid metabolic process|monoterpenoid metabolic process|oxidative deethylation|oxidative demethylation|steroid catabolic process|toxin biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|caffeine oxidase activity|demethylase activity|electron carrier activity|enzyme binding|heme binding|oxygen binding			ovary(3)|breast(1)	4					Acenocoumarol(DB01418)|Acetaminophen(DB00316)|Aciclovir(DB00787)|Alosetron(DB00969)|Aminophenazone(DB01424)|Amitriptyline(DB00321)|Anagrelide(DB00261)|Azelastine(DB00972)|Bortezomib(DB00188)|Caffeine(DB00201)|Carmustine(DB00262)|Chlordiazepoxide(DB00475)|Chlorpromazine(DB00477)|Chlorzoxazone(DB00356)|Cimetidine(DB00501)|Cinacalcet(DB01012)|Ciprofloxacin(DB00537)|Clomipramine(DB01242)|Clotrimazole(DB00257)|Clozapine(DB00363)|Conjugated Estrogens(DB00286)|Cyclobenzaprine(DB00924)|Dacarbazine(DB00851)|Desloratadine(DB00967)|Diazepam(DB00829)|Dibucaine(DB00527)|Diclofenac(DB00586)|Duloxetine(DB00476)|Enoxacin(DB00467)|Esomeprazole(DB00736)|Estradiol(DB00783)|Estrone(DB00655)|Fluorouracil(DB00544)|Flutamide(DB00499)|Fluvoxamine(DB00176)|Frovatriptan(DB00998)|Grepafloxacin(DB00365)|Haloperidol(DB00502)|Hesperetin(DB01094)|Imipramine(DB00458)|Ketoconazole(DB01026)|Leflunomide(DB01097)|Levobupivacaine(DB01002)|Levofloxacin(DB01137)|Lidocaine(DB00281)|Lomefloxacin(DB00978)|Melatonin(DB01065)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mirtazapine(DB00370)|Norfloxacin(DB01059)|Nortriptyline(DB00540)|Ofloxacin(DB01165)|Olanzapine(DB00334)|Ondansetron(DB00904)|Palonosetron(DB00377)|Pantoprazole(DB00213)|Pefloxacin(DB00487)|Pimozide(DB01100)|Propafenone(DB01182)|Propranolol(DB00571)|Quinidine(DB00908)|Ramelteon(DB00980)|Ranitidine(DB00863)|Rasagiline(DB01367)|Rifampin(DB01045)|Riluzole(DB00740)|Rofecoxib(DB00533)|Ropinirole(DB00268)|Ropivacaine(DB00296)|Tacrine(DB00382)|Telithromycin(DB00976)|Terfenadine(DB00342)|Theophylline(DB00277)|Thiabendazole(DB00730)|Tizanidine(DB00697)|Tolbutamide(DB01124)|Verapamil(DB00661)|Warfarin(DB00682)|Zileuton(DB00744)|Zolmitriptan(DB00315)	AGATACAGAGGAAGATCCAGA	0.463													32	53					0	0	1	0	0
CPLX3	594855	broad.mit.edu	37	15	75122642	75122642	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr15:75122642C>T	uc002ayu.1	+	3	518	c.424C>T	c.(424-426)CAG>TAG	p.Q142*		NM_001030005	NP_001025176	Q8WVH0	CPLX3_HUMAN	complexin 3 precursor	142						cell junction|synapse	syntaxin binding				0						GGACAAGGCCCAGGCCACACT	0.612													20	31					0	0	1	0	0
SIN3A	25942	broad.mit.edu	37	15	75694309	75694309	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr15:75694309G>A	uc002bai.2	-	10	1669	c.1410C>T	c.(1408-1410)GTC>GTT	p.V470V	SIN3A_uc002baj.2_Silent_p.V470V|SIN3A_uc010uml.1_Silent_p.V470V	NM_015477	NP_056292	Q96ST3	SIN3A_HUMAN	transcriptional co-repressor Sin3A	470	PAH 3.|Interaction with SAP30 (By similarity).|Interaction with REST (By similarity).				blood coagulation|cellular lipid metabolic process|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus|Sin3 complex	protein binding			skin(3)|ovary(1)|lung(1)	5						GAGCCTTTCGGACCTTATGGA	0.343													14	31					0	0	1	0	0
SCAPER	49855	broad.mit.edu	37	15	76668600	76668600	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr15:76668600G>A	uc002bby.2	-	28	3817	c.3758C>T	c.(3757-3759)TCC>TTC	p.S1253F	SCAPER_uc010bkr.2_Intron|SCAPER_uc002bbx.2_Missense_Mutation_p.S1007F	NM_020843	NP_065894	Q9BY12	SCAPE_HUMAN	S-phase cyclin A-associated protein in the ER	1252						endoplasmic reticulum|nucleus	zinc ion binding			large_intestine(1)|lung(1)|ovary(1)	3						GCCCAGCAGGGAGCTGGCCAT	0.562													12	14					0	0	1	0	0
DNAJA4	55466	broad.mit.edu	37	15	78567973	78567973	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr15:78567973C>T	uc002bdj.1	+	5	897	c.780C>T	c.(778-780)ATC>ATT	p.I260I	DNAJA4_uc002bdi.2_Silent_p.I289I|DNAJA4_uc002bdk.2_Silent_p.I233I|DNAJA4_uc002bdm.1_Silent_p.I44I	NM_001130182	NP_001123654	Q8WW22	DNJA4_HUMAN	DnaJ (Hsp40) homolog, subfamily A, member 4	260					protein folding|response to heat	membrane	ATP binding|heat shock protein binding|metal ion binding|unfolded protein binding			skin(1)	1						ATGACTTGATCATGAAAATGA	0.413													13	38					0	0	1	0	0
ADAMTS7	11173	broad.mit.edu	37	15	79056047	79056047	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr15:79056047C>T	uc002bej.3	-	22	4945	c.4734G>A	c.(4732-4734)TGG>TGA	p.W1578*		NM_014272	NP_055087	Q9UKP4	ATS7_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1578	TSP type-1 8.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0						TCACCTGGCCCCAGGGCCCCA	0.692													12	11					0	0	1	0	0
RASGRF1	5923	broad.mit.edu	37	15	79298659	79298659	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr15:79298659C>T	uc002beq.2	-	15	2358	c.1983G>A	c.(1981-1983)ACG>ACA	p.T661T	RASGRF1_uc002bep.2_Silent_p.T648T|RASGRF1_uc010blm.1_Silent_p.T570T|RASGRF1_uc002ber.3_Silent_p.T648T|RASGRF1_uc010unh.1_Silent_p.T56T	NM_002891	NP_002882	Q13972	RGRF1_HUMAN	Ras protein-specific guanine	661	N-terminal Ras-GEF.				activation of Rac GTPase activity|apoptosis|induction of apoptosis by extracellular signals|long-term memory|nerve growth factor receptor signaling pathway|neuron projection development|regulation of Rac protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol|growth cone|plasma membrane|synaptosome	Rho guanyl-nucleotide exchange factor activity			skin(4)|ovary(1)|central_nervous_system(1)	6						AGCGCAGGTCCGTCAGCCTCT	0.552													29	35					0	0	1	0	0
FSD2	123722	broad.mit.edu	37	15	83440957	83440957	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr15:83440957G>A	uc002bjd.2	-	7	1302	c.1135C>T	c.(1135-1137)CCA>TCA	p.P379S	FSD2_uc010uol.1_Missense_Mutation_p.P379S|FSD2_uc010uom.1_Missense_Mutation_p.P379S	NM_001007122	NP_001007123	A1L4K1	FSD2_HUMAN	fibronectin type III and SPRY domain containing	379	Fibronectin type-III 1.									central_nervous_system(1)	1						GGGACCTGTGGATTTATGACT	0.512													5	16					0	0	1	0	0
ALPK3	57538	broad.mit.edu	37	15	85399733	85399733	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr15:85399733G>A	uc002ble.2	+	6	2537	c.2370G>A	c.(2368-2370)ATG>ATA	p.M790I		NM_020778	NP_065829	Q96L96	ALPK3_HUMAN	alpha-kinase 3	790					heart development	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(3)|ovary(3)|lung(2)|skin(2)|central_nervous_system(1)|breast(1)	12			BRCA - Breast invasive adenocarcinoma(143;0.0587)			TTGAACCCATGGATATGGAAA	0.517													42	59					0	0	1	0	0
NTRK3	4916	broad.mit.edu	37	15	88476403	88476403	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr15:88476403G>A	uc002bme.1	-	15	1891	c.1729C>T	c.(1729-1731)CCC>TCC	p.P577S	NTRK3_uc002bmh.2_Missense_Mutation_p.P569S|NTRK3_uc002bmf.1_Missense_Mutation_p.P577S|NTRK3_uc010upl.1_Missense_Mutation_p.P479S|NTRK3_uc010bnh.1_Missense_Mutation_p.P569S	NM_001012338	NP_001012338	Q16288	NTRK3_HUMAN	neurotrophic tyrosine kinase, receptor, type 3	577	Cytoplasmic (Potential).|Protein kinase.				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity		ETV6/NTRK3(234)	soft_tissue(85)|kidney(66)|breast(56)|salivary_gland(26)|lung(22)|large_intestine(6)|ovary(6)|stomach(5)|central_nervous_system(3)|pancreas(3)|haematopoietic_and_lymphoid_tissue(2)|skin(1)	281			BRCA - Breast invasive adenocarcinoma(143;0.211)			GCCAGGGTGGGATCCTTCAGG	0.562			T	ETV6	congenital fibrosarcoma|Secretory breast 					TSP Lung(13;0.10)			24	41					0	0	1	0	0
NTRK3	4916	broad.mit.edu	37	15	88678428	88678428	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr15:88678428G>T	uc002bme.1	-	9	1270	c.1108C>A	c.(1108-1110)CAC>AAC	p.H370N	NTRK3_uc002bmh.2_Missense_Mutation_p.H370N|NTRK3_uc002bmf.1_Missense_Mutation_p.H370N|NTRK3_uc010upl.1_Missense_Mutation_p.H272N|NTRK3_uc010bnh.1_Missense_Mutation_p.H370N|NTRK3_uc002bmg.2_Missense_Mutation_p.H370N	NM_001012338	NP_001012338	Q16288	NTRK3_HUMAN	neurotrophic tyrosine kinase, receptor, type 3	370	Ig-like C2-type 2.|Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity		ETV6/NTRK3(234)	soft_tissue(85)|kidney(66)|breast(56)|salivary_gland(26)|lung(22)|large_intestine(6)|ovary(6)|stomach(5)|central_nervous_system(3)|pancreas(3)|haematopoietic_and_lymphoid_tissue(2)|skin(1)	281			BRCA - Breast invasive adenocarcinoma(143;0.211)			TTGTTGTAGTGGGTGGGCTTG	0.537			T	ETV6	congenital fibrosarcoma|Secretory breast 					TSP Lung(13;0.10)			44	103					7.05121e-23	7.17309e-23	1	1	0
NTRK3	4916	broad.mit.edu	37	15	88679836	88679836	+	Silent	SNP	A	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr15:88679836A>T	uc002bme.1	-	7	789	c.627T>A	c.(625-627)CTT>CTA	p.L209L	NTRK3_uc002bmh.2_Silent_p.L209L|NTRK3_uc002bmf.1_Silent_p.L209L|NTRK3_uc010upl.1_Silent_p.L111L|NTRK3_uc010bnh.1_Silent_p.L209L|NTRK3_uc002bmg.2_Silent_p.L209L	NM_001012338	NP_001012338	Q16288	NTRK3_HUMAN	neurotrophic tyrosine kinase, receptor, type 3	209	Extracellular (Potential).|LRRCT.				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity		ETV6/NTRK3(234)	soft_tissue(85)|kidney(66)|breast(56)|salivary_gland(26)|lung(22)|large_intestine(6)|ovary(6)|stomach(5)|central_nervous_system(3)|pancreas(3)|haematopoietic_and_lymphoid_tissue(2)|skin(1)	281			BRCA - Breast invasive adenocarcinoma(143;0.211)			TGATCTCAGGAAGGTCTGGGA	0.537			T	ETV6	congenital fibrosarcoma|Secretory breast 					TSP Lung(13;0.10)			7	16					0	0	1	0	0
HAPLN3	145864	broad.mit.edu	37	15	89422351	89422351	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr15:89422351C>T	uc002bnc.2	-	4	771	c.643G>A	c.(643-645)GGC>AGC	p.G215S	HAPLN3_uc002bne.2_RNA|HAPLN3_uc002bnd.2_Missense_Mutation_p.G277S	NM_178232	NP_839946	Q96S86	HPLN3_HUMAN	hyaluronan and proteoglycan link protein 3	215	Link 1.				cell adhesion	proteinaceous extracellular matrix	hyaluronic acid binding				0	Lung NSC(78;0.0392)|all_lung(78;0.077)					TGCAGCCAGCCCGCGTTGCAC	0.711											OREG0023445	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	14	12					0	0	1	0	0
CHD2	1106	broad.mit.edu	37	15	93496705	93496705	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr15:93496705C>T	uc002bsp.2	+	14	2196	c.1621C>T	c.(1621-1623)CCT>TCT	p.P541S	CHD2_uc002bso.1_Missense_Mutation_p.P541S	NM_001271	NP_001262	O14647	CHD2_HUMAN	chromodomain helicase DNA binding protein 2	541	Helicase ATP-binding.				regulation of transcription from RNA polymerase II promoter	nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|skin(1)	2	Lung NSC(78;0.00976)|all_lung(78;0.016)		BRCA - Breast invasive adenocarcinoma(143;0.0282)|OV - Ovarian serous cystadenocarcinoma(32;0.0814)			TATAGTCGTCCCTTTATCCAC	0.478													53	66					0	0	1	0	0
MEF2A	4205	broad.mit.edu	37	15	100214787	100214787	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr15:100214787C>T	uc010urw.1	+	5	945	c.586C>T	c.(586-588)CCT>TCT	p.P196S	MEF2A_uc010urv.1_Missense_Mutation_p.P126S|MEF2A_uc010bos.2_Missense_Mutation_p.P194S|MEF2A_uc002bvf.2_Missense_Mutation_p.P196S|MEF2A_uc002bve.2_Missense_Mutation_p.P194S|MEF2A_uc002bvg.2_Missense_Mutation_p.P194S|MEF2A_uc002bvi.2_Missense_Mutation_p.P194S|MEF2A_uc010bot.2_Missense_Mutation_p.P126S	NM_005587	NP_005578	Q02078	MEF2A_HUMAN	myocyte enhancer factor 2A isoform 1	196					apoptosis|BMK cascade|cardiac conduction|cellular response to calcium ion|dendrite morphogenesis|innate immune response|mitochondrial genome maintenance|mitochondrion distribution|muscle organ development|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of transcription from RNA polymerase II promoter|nerve growth factor receptor signaling pathway|positive regulation of muscle cell differentiation|positive regulation of transcription from RNA polymerase II promoter|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|ventricular cardiac myofibril development	nuclear chromatin|nucleoplasm	activating transcription factor binding|histone acetyltransferase binding|histone deacetylase binding|protein heterodimerization activity|RNA polymerase II regulatory region sequence-specific DNA binding|sequence-specific DNA binding RNA polymerase II transcription factor activity|SMAD binding			ovary(1)	1	Lung NSC(78;0.00335)|all_lung(78;0.00659)|Melanoma(26;0.00778)|Medulloblastoma(229;0.163)		OV - Ovarian serous cystadenocarcinoma(32;0.00085)			TCCTGGAGCTCCTCAGAGACC	0.433													50	117					0	0	1	0	0
LASS3	204219	broad.mit.edu	37	15	101041962	101041962	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr15:101041962G>A	uc002bvz.2	-	4	595	c.93C>T	c.(91-93)CTC>CTT	p.L31L	LASS3_uc002bwa.2_Silent_p.L42L|LASS3_uc002bwb.2_Silent_p.L31L	NM_178842	NP_849164	Q8IU89	CERS3_HUMAN	LAG1 longevity assurance homolog 3	31						endoplasmic reticulum membrane|integral to membrane|nuclear membrane	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|sphingosine N-acyltransferase activity			ovary(2)|pancreas(1)|skin(1)	4	Lung NSC(78;0.0018)|all_lung(78;0.00278)|Melanoma(26;0.00852)		OV - Ovarian serous cystadenocarcinoma(32;0.000867)|LUSC - Lung squamous cell carcinoma(107;0.132)|Lung(145;0.161)			TTACAAAGACGAGTCCATCGT	0.373													15	30					0	0	1	0	0
LUC7L	55692	broad.mit.edu	37	16	240043	240043	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr16:240043G>A	uc002cgc.1	-	9	1009	c.898C>T	c.(898-900)CGG>TGG	p.R300W	LUC7L_uc002cga.1_Missense_Mutation_p.R300W|LUC7L_uc002cgd.1_RNA|LUC7L_uc002cge.1_Missense_Mutation_p.R300W|LUC7L_uc002cgb.1_Missense_Mutation_p.R214W	NM_201412	NP_958815	Q9NQ29	LUC7L_HUMAN	LUC7-like isoform b	300	Arg/Ser-rich.						metal ion binding			central_nervous_system(1)	1		all_cancers(16;1.1e-06)|all_epithelial(16;2.71e-06)|Hepatocellular(16;0.000105)|Lung NSC(18;0.0138)|all_lung(18;0.0306)				CGGTGGCGCCGATGTCTATCT	0.622													6	28					0	0	1	0	0
RGS11	8786	broad.mit.edu	37	16	321457	321457	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr16:321457G>A	uc002cgj.1	-	11	693	c.690C>T	c.(688-690)ATC>ATT	p.I230I	RGS11_uc002cgi.1_Silent_p.I209I|RGS11_uc010bqs.1_Silent_p.I219I|RGS11_uc002cgk.1_Silent_p.I46I	NM_183337	NP_899180	O94810	RGS11_HUMAN	regulator of G-protein signalling 11 isoform 1	230	G protein gamma.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|signal transducer activity			lung(1)|pancreas(1)	2		all_cancers(16;6.71e-07)|all_epithelial(16;1.59e-06)|Hepatocellular(16;0.000105)|Lung NSC(18;0.00769)|all_lung(18;0.0186)				TGAAGTACTCGATCTAGGATG	0.622													18	32					0	0	1	0	0
PIGQ	9091	broad.mit.edu	37	16	624572	624572	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr16:624572C>T	uc002cho.2	+	2	600	c.498C>T	c.(496-498)TTC>TTT	p.F166F	PIGQ_uc010bqw.2_Silent_p.F166F|PIGQ_uc002chm.2_Silent_p.F166F|PIGQ_uc002chn.2_Silent_p.F166F|PIGQ_uc010uui.1_Silent_p.F180F	NM_148920	NP_683721	Q9BRB3	PIGQ_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	166					C-terminal protein lipidation|carbohydrate metabolic process|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane	phosphatidylinositol N-acetylglucosaminyltransferase activity			central_nervous_system(1)	1		Hepatocellular(780;0.00335)				CTGCCGTCTTCGACACGGTAG	0.687													5	11					0	0	1	0	0
TPSB2	64499	broad.mit.edu	37	16	1279649	1279649	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr16:1279649G>A	uc002cky.2	-	3	174	c.151C>T	c.(151-153)CGC>TGC	p.R51C	TPSB2_uc010brk.1_RNA|TPSB2_uc002ckx.2_5'UTR	NM_024164	NP_077078	P20231	TRYB2_HUMAN	tryptase beta 2 precursor	51	Peptidase S1.		HGP -> RDR (in beta-III).		proteolysis	extracellular region	protein binding|serine-type endopeptidase activity				0		Hepatocellular(780;0.00369)				TATCGGTCGCGGACTCTCAGG	0.701													7	36					0	0	1	0	0
IFT140	9742	broad.mit.edu	37	16	1652420	1652420	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr16:1652420G>A	uc002cmb.2	-	4	682	c.320C>T	c.(319-321)ACC>ATC	p.T107I		NM_014714	NP_055529	Q96RY7	IF140_HUMAN	intraflagellar transport 140	107	WD 3.									ovary(3)|pancreas(1)|skin(1)	5		Hepatocellular(780;0.219)				ACGGAGCACGGTGATGTCGGC	0.587													11	17					0	0	1	0	0
CLDN6	9074	broad.mit.edu	37	16	3065605	3065605	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr16:3065605C>T	uc002csu.3	-	2	478	c.418G>A	c.(418-420)GCG>ACG	p.A140T		NM_021195	NP_067018	P56747	CLD6_HUMAN	claudin 6	140	Extracellular (Potential).				calcium-independent cell-cell adhesion	integral to membrane|tight junction	identical protein binding|structural molecule activity				0						ATGGCATGCGCCGTCCAGCAC	0.627													4	20					0	0	1	0	0
CLDN6	9074	broad.mit.edu	37	16	3065768	3065768	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr16:3065768G>A	uc002csu.3	-	2	315	c.255C>T	c.(253-255)GTC>GTT	p.V85V		NM_021195	NP_067018	P56747	CLD6_HUMAN	claudin 6	85	Helical; (Potential).				calcium-independent cell-cell adhesion	integral to membrane|tight junction	identical protein binding|structural molecule activity				0						GGAGGGCGATGACACAGAGGG	0.632													16	34					0	0	1	0	0
IL32	9235	broad.mit.edu	37	16	3117520	3117520	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr16:3117520C>T	uc002cto.2	+	3	369	c.158C>T	c.(157-159)CCG>CTG	p.P53L	IL32_uc002ctk.2_Intron|IL32_uc010uwp.1_Intron|IL32_uc010btb.2_Intron|IL32_uc002ctl.2_Intron|IL32_uc002ctm.2_Intron|IL32_uc002ctn.2_Intron|IL32_uc010btc.1_Missense_Mutation_p.P53L|IL32_uc002cts.3_Intron|IL32_uc002ctp.2_Intron|IL32_uc010uwq.1_Missense_Mutation_p.P53L|IL32_uc002ctq.2_Missense_Mutation_p.P53L|IL32_uc002ctr.2_Intron|IL32_uc002ctt.2_Intron|IL32_uc010uwr.1_Intron|IL32_uc002ctu.2_Intron	NM_004221	NP_004212	P24001	IL32_HUMAN	interleukin 32 isoform B	53					cell adhesion|defense response|immune response	extracellular space	cytokine activity			pancreas(1)	1						GACAAGGATCCGGCCCTTTGG	0.552													41	59					0	0	1	0	0
ZSCAN10	84891	broad.mit.edu	37	16	3139826	3139826	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr16:3139826G>A	uc002ctv.1	-	5	1532	c.1444C>T	c.(1444-1446)CTG>TTG	p.L482L	ZSCAN10_uc002cty.1_Silent_p.L143L|ZSCAN10_uc002ctw.1_Silent_p.L400L|ZSCAN10_uc002ctx.1_Silent_p.L410L	NM_032805	NP_116194	Q96SZ4	ZSC10_HUMAN	zinc finger and SCAN domain containing 10	482	C2H2-type 6.				negative regulation of transcription, DNA-dependent|viral reproduction	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1						TGGGCCACCAGGTGCTCGCTG	0.736													4	2					0	0	1	0	0
A2BP1	54715	broad.mit.edu	37	16	7645562	7645562	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr16:7645562C>T	uc002cys.2	+	8	1468	c.480C>T	c.(478-480)TTC>TTT	p.F160F	A2BP1_uc010buf.1_Silent_p.F160F|A2BP1_uc002cyr.1_Silent_p.F159F|A2BP1_uc002cyt.2_Silent_p.F160F|A2BP1_uc010uxz.1_Silent_p.F203F|A2BP1_uc010uya.1_Intron|A2BP1_uc002cyv.1_Silent_p.F160F|A2BP1_uc010uyb.1_Silent_p.F160F|A2BP1_uc002cyw.2_Silent_p.F180F|A2BP1_uc002cyy.2_Silent_p.F180F|A2BP1_uc002cyx.2_Silent_p.F180F|A2BP1_uc010uyc.1_Silent_p.F180F	NM_018723	NP_061193	Q9NWB1	RFOX1_HUMAN	ataxin 2-binding protein 1 isoform 4	160	RRM.	Interaction with RNA.		F->A: Reduces RNA-binding affinity 30'000-fold.	mRNA processing|RNA splicing|RNA transport	nucleus|trans-Golgi network	nucleotide binding|protein C-terminus binding|RNA binding				0		all_cancers(2;4.54e-52)|Colorectal(2;6.95e-44)|all_epithelial(2;1.15e-37)|Lung NSC(2;0.000289)|all_lung(2;0.00148)|Myeloproliferative disorder(2;0.0122)|Medulloblastoma(2;0.0354)|all_neural(2;0.0381)|all_hematologic(2;0.0749)|Renal(2;0.0758)|Melanoma(2;0.211)		Colorectal(1;3.55e-51)|COAD - Colon adenocarcinoma(2;1.92e-46)|all cancers(1;5.36e-16)|Epithelial(1;3.98e-15)|READ - Rectum adenocarcinoma(2;3.71e-05)|GBM - Glioblastoma multiforme(1;0.0499)		GATTTGGTTTCGTAACTTTCG	0.443													18	78					0	0	1	0	0
SMG1	23049	broad.mit.edu	37	16	18841656	18841656	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr16:18841656G>A	uc002dfm.2	-	52	9191	c.8828C>T	c.(8827-8829)CCG>CTG	p.P2943L	SMG1_uc010bwb.2_Missense_Mutation_p.P2803L|SMG1_uc010bwa.2_Missense_Mutation_p.P1674L	NM_015092	NP_055907	Q96Q15	SMG1_HUMAN	PI-3-kinase-related kinase SMG-1	2943					DNA repair|mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|peptidyl-serine phosphorylation|phosphatidylinositol phosphorylation|protein autophosphorylation	cytoplasm|nucleus	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			breast(5)|stomach(4)|lung(4)|kidney(2)|ovary(1)	16						ACCATTTCTCGGTTGGATTAA	0.413													14	20					0	0	1	0	0
TMC7	79905	broad.mit.edu	37	16	19058440	19058440	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr16:19058440G>A	uc002dfq.2	+	12	1739	c.1609G>A	c.(1609-1611)GAG>AAG	p.E537K	TMC7_uc002dfp.2_Missense_Mutation_p.E537K|TMC7_uc010vap.1_Missense_Mutation_p.E427K	NM_024847	NP_079123	Q7Z402	TMC7_HUMAN	transmembrane channel-like 7 isoform a	537	Extracellular (Potential).					integral to membrane				skin(2)|ovary(1)	3						GGGGCAGCAGGAGTTTGCCAT	0.527													43	150					0	0	1	0	0
TMC5	79838	broad.mit.edu	37	16	19485576	19485576	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr16:19485576G>A	uc002dgc.3	+	12	2817	c.2068G>A	c.(2068-2070)GAA>AAA	p.E690K	TMC5_uc010vaq.1_Missense_Mutation_p.E638K|TMC5_uc002dgb.3_Missense_Mutation_p.E690K|TMC5_uc010var.1_Missense_Mutation_p.E690K|TMC5_uc002dgd.1_Missense_Mutation_p.E444K|TMC5_uc002dge.3_Missense_Mutation_p.E444K|TMC5_uc002dgf.3_Missense_Mutation_p.E373K|TMC5_uc002dgg.3_Missense_Mutation_p.E331K	NM_001105248	NP_001098718	Q6UXY8	TMC5_HUMAN	transmembrane channel-like 5 isoform a	690	Cytoplasmic (Potential).					integral to membrane				skin(1)	1						GCCACGGCACGAAGTCTACGT	0.527													23	93					0	0	1	0	0
ACSM2B	348158	broad.mit.edu	37	16	20570559	20570559	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr16:20570559C>T	uc002dhj.3	-	4	598	c.388G>A	c.(388-390)GGT>AGT	p.G130S	ACSM2B_uc002dhk.3_Missense_Mutation_p.G130S|ACSM2B_uc010bwf.1_Missense_Mutation_p.G130S	NM_182617	NP_872423	Q68CK6	ACS2B_HUMAN	acyl-CoA synthetase medium-chain family member	130					fatty acid metabolic process|xenobiotic metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|CoA-ligase activity|metal ion binding			skin(3)|ovary(1)|central_nervous_system(1)	5						AGTTACCAACCTGCTCGAATG	0.562													11	19					0	0	1	0	0
ACSM1	116285	broad.mit.edu	37	16	20638543	20638543	+	Silent	SNP	C	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr16:20638543C>A	uc002dhm.1	-	10	1463	c.1395G>T	c.(1393-1395)CTG>CTT	p.L465L	ACSM1_uc002dhn.1_Intron|ACSM1_uc010bwg.1_Silent_p.L465L	NM_052956	NP_443188	Q08AH1	ACSM1_HUMAN	acyl-CoA synthetase medium-chain family member	465					benzoate metabolic process|butyrate metabolic process|energy derivation by oxidation of organic compounds|fatty acid oxidation|xenobiotic metabolic process	mitochondrial matrix	acyl-CoA ligase activity|ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding			central_nervous_system(1)|skin(1)	2						CACTCCTCCCCAGGAAACAAA	0.512													5	276					0.014758	0.0148098	1	1	0
DNAH3	55567	broad.mit.edu	37	16	20959957	20959957	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr16:20959957C>T	uc010vbe.1	-	57	11191	c.11191G>A	c.(11191-11193)GAA>AAA	p.E3731K	DNAH3_uc010vbd.1_Missense_Mutation_p.E1166K	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	3731					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		TAATTACATTCCCCTGGGGAC	0.463													9	44					0	0	1	0	0
DNAH3	55567	broad.mit.edu	37	16	21011622	21011622	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr16:21011622G>A	uc010vbe.1	-	43	6345	c.6345C>T	c.(6343-6345)ATC>ATT	p.I2115I		NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	2115	AAA 3 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		TGGACATGATGATATCCTGGG	0.517													23	43					0	0	1	0	0
DNAH3	55567	broad.mit.edu	37	16	21051236	21051236	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr16:21051236G>A	uc010vbe.1	-	33	4668	c.4668C>T	c.(4666-4668)GTC>GTT	p.V1556V		NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	1556	AAA 1 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		CGTAATCTGGGACCATCATGG	0.483													29	39					0	0	1	0	0
ZP2	7783	broad.mit.edu	37	16	21216882	21216882	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr16:21216882C>T	uc002dii.2	-	7	552	c.552G>A	c.(550-552)TGG>TGA	p.W184*	ZP2_uc010bwn.1_Nonsense_Mutation_p.W223*|ZP2_uc010bwo.2_Nonsense_Mutation_p.W223*	NM_003460	NP_003451	Q05996	ZP2_HUMAN	zona pellucida glycoprotein 2 preproprotein	184	Extracellular (Potential).				binding of sperm to zona pellucida|intracellular protein transport	endoplasmic reticulum|Golgi apparatus|integral to membrane|multivesicular body|plasma membrane|proteinaceous extracellular matrix|stored secretory granule	acrosin binding|coreceptor activity			central_nervous_system(2)|ovary(1)	3				GBM - Glioblastoma multiforme(48;0.0573)		CCTCAATGCTCCATCCCATCT	0.483													29	58					0	0	1	0	0
EEF2K	29904	broad.mit.edu	37	16	22262479	22262479	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr16:22262479C>T	uc002dki.2	+	6	939	c.454C>T	c.(454-456)CTC>TTC	p.L152F	EEF2K_uc002dkh.2_RNA	NM_013302	NP_037434	O00418	EF2K_HUMAN	elongation factor-2 kinase	152	Alpha-type protein kinase.				insulin receptor signaling pathway|translational elongation	cytosol	ATP binding|calcium ion binding|calmodulin binding|elongation factor-2 kinase activity|translation factor activity, nucleic acid binding			large_intestine(1)	1				GBM - Glioblastoma multiforme(48;0.0223)		CAGGAAGAAGCTCTCCAACTT	0.592													26	116					0	0	1	0	0
SCNN1B	6338	broad.mit.edu	37	16	23382666	23382666	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr16:23382666C>T	uc002dln.2	+	6	1103	c.927C>T	c.(925-927)TTC>TTT	p.F309F		NM_000336	NP_000327	P51168	SCNNB_HUMAN	sodium channel, nonvoltage-gated 1, beta	309	Extracellular (By similarity).				excretion|sensory perception of taste	apical plasma membrane	ligand-gated sodium channel activity|WW domain binding			ovary(3)|breast(2)|large_intestine(1)|pancreas(1)	7				GBM - Glioblastoma multiforme(48;0.0465)	Amiloride(DB00594)|Triamterene(DB00384)	ACGTCCCCTTCCTTGCGTCCA	0.592													21	27					0	0	1	0	0
COG7	91949	broad.mit.edu	37	16	23424817	23424817	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr16:23424817G>A	uc002dlo.2	-	10	1549	c.1361C>T	c.(1360-1362)CCC>CTC	p.P454L		NM_153603	NP_705831	P83436	COG7_HUMAN	component of oligomeric golgi complex 7	454					intracellular protein transport|protein glycosylation|protein localization in Golgi apparatus|protein stabilization|retrograde vesicle-mediated transport, Golgi to ER	Golgi membrane|Golgi transport complex	protein binding				0				GBM - Glioblastoma multiforme(48;0.0401)		GAGGGAGTTGGGAGGAATGTG	0.478													35	46					0	0	1	0	0
GGA2	23062	broad.mit.edu	37	16	23499999	23499999	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr16:23499999C>T	uc002dlq.2	-	6	583	c.507G>A	c.(505-507)GTG>GTA	p.V169V	GGA2_uc010bxo.1_RNA	NM_015044	NP_055859	Q9UJY4	GGA2_HUMAN	ADP-ribosylation factor binding protein 2	169					intracellular protein transport|vesicle-mediated transport	clathrin adaptor complex|clathrin-coated vesicle|endosome membrane|trans-Golgi network	ADP-ribosylation factor binding			ovary(1)|central_nervous_system(1)	2				GBM - Glioblastoma multiforme(48;0.0386)		AGATTTTATCCACTGGTAGTT	0.408													25	103					0	0	1	0	0
RBBP6	5930	broad.mit.edu	37	16	24578678	24578678	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr16:24578678C>T	uc002dmh.2	+	15	2844	c.1804C>T	c.(1804-1806)CCA>TCA	p.P602S	RBBP6_uc010vcb.1_Missense_Mutation_p.P469S|RBBP6_uc002dmi.2_Missense_Mutation_p.P602S|RBBP6_uc010bxr.2_Intron|RBBP6_uc002dmk.2_Missense_Mutation_p.P469S	NM_006910	NP_008841	Q7Z6E9	RBBP6_HUMAN	retinoblastoma-binding protein 6 isoform 1	602					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	chromosome|nucleolus|ubiquitin ligase complex	nucleic acid binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(3)|pancreas(1)	4				GBM - Glioblastoma multiforme(48;0.0518)		TGTCCCTCCTCCAGGGTTTCC	0.368													118	140					0	0	1	0	0
HS3ST4	9951	broad.mit.edu	37	16	26147485	26147485	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr16:26147485G>A	uc002dof.2	+	2	1679	c.1287G>A	c.(1285-1287)AGG>AGA	p.R429R		NM_006040	NP_006031	Q9Y661	HS3S4_HUMAN	heparan sulfate D-glucosaminyl	429	Lumenal (Potential).				heparan sulfate proteoglycan metabolic process	extracellular region|Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine 3-sulfotransferase 1 activity			large_intestine(1)|breast(1)	2				GBM - Glioblastoma multiforme(48;0.0988)		ACAGACTGAGGAAATTCTACA	0.483													5	8					0	0	1	0	0
JMJD5	79831	broad.mit.edu	37	16	27225028	27225029	+	Silent	DNP	CC	TT	TT			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr16:27225028_27225029CC>TT	uc002doh.2	+	3	803_804	c.621_622CC>TT	c.(619-624)ATCCTG>ATTTTG	p.207_208IL>IL	JMJD5_uc010vcn.1_Silent_p.245_246IL>IL|JMJD5_uc010bxw.2_Intron|JMJD5_uc010bxx.2_5'Flank	NM_024773	NP_079049	Q8N371	KDM8_HUMAN	jumonji domain containing 5 isoform 2	207_208					G2/M transition of mitotic cell cycle|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	chromatin binding|histone demethylase activity (H3-K36 specific)|metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			ovary(2)|upper_aerodigestive_tract(1)	3						GGCCCGTGATCCTGAAAGGCGT	0.579													13	18					0	0	1	0	0
ATP2A1	487	broad.mit.edu	37	16	28913330	28913330	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr16:28913330G>A	uc002dro.1	+	16	2431	c.2247G>A	c.(2245-2247)GAG>GAA	p.E749E	uc010vct.1_Intron|ATP2A1_uc002drn.1_Silent_p.E749E|ATP2A1_uc002drp.1_Silent_p.E624E	NM_173201	NP_775293	O14983	AT2A1_HUMAN	ATPase, Ca++ transporting, fast twitch 1 isoform	749	Cytoplasmic (By similarity).				apoptosis in response to endoplasmic reticulum stress|apoptotic mitochondrial changes|ATP biosynthetic process|calcium ion import|elevation of endoplasmic reticulum calcium ion concentration|elevation of mitochondrial calcium ion concentration|maintenance of mitochondrion location|negative regulation of striated muscle contraction|platelet activation|positive regulation of fast-twitch skeletal muscle fiber contraction|reduction of endoplasmic reticulum calcium ion concentration|relaxation of skeletal muscle|response to endoplasmic reticulum stress	endoplasmic reticulum membrane|ER-Golgi intermediate compartment|H zone|I band|microsome|perinuclear region of cytoplasm|platelet dense tubular network membrane|sarcoplasmic reticulum|sarcoplasmic reticulum membrane	ATP binding|ATP binding|calcium ion binding|calcium ion binding|calcium-transporting ATPase activity|protein homodimerization activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						CTGTGGAGGAGGGCCGCGCCA	0.592													5	39					0	0	1	0	0
MVP	9961	broad.mit.edu	37	16	29851524	29851524	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr16:29851524C>T	uc002dui.2	+	8	1019	c.935C>T	c.(934-936)CCA>CTA	p.P312L	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|MVP_uc010vdz.1_RNA|MVP_uc002duj.2_Missense_Mutation_p.P312L|MVP_uc010vea.1_5'UTR	NM_005115	NP_005106	Q14764	MVP_HUMAN	major vault protein	312	MVP 6.				mRNA transport|protein transport|response to drug|transmembrane transport	cytoplasm|nuclear pore|ribonucleoprotein complex	protein binding			skin(2)|ovary(1)|central_nervous_system(1)	4						TTCCTCCAGCCAGGAGAGCAG	0.602													5	28					0	0	1	0	0
SRCAP	10847	broad.mit.edu	37	16	30748938	30748938	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr16:30748938C>T	uc002dze.1	+	34	7962	c.7577C>T	c.(7576-7578)CCT>CTT	p.P2526L	SRCAP_uc002dzf.2_RNA|SRCAP_uc002dzg.1_Missense_Mutation_p.P2321L	NM_006662	NP_006653	Q6ZRS2	SRCAP_HUMAN	Snf2-related CBP activator protein	2526	Pro-rich.				interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|nucleus|protein complex	ATP binding|DNA binding|helicase activity|histone acetyltransferase activity|transcription coactivator activity			ovary(3)|skin(1)	4			Colorectal(24;0.198)			CCTTCCTCTCCTCTCTTGCTT	0.373													41	58					0	0	1	0	0
SETD1A	9739	broad.mit.edu	37	16	30977030	30977031	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr16:30977030_30977031CC>TT	uc002ead.1	+	8	2514_2515	c.1828_1829CC>TT	c.(1828-1830)CCC>TTC	p.P610F		NM_014712	NP_055527	O15047	SET1A_HUMAN	SET domain containing 1A	610	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nuclear speck|Set1C/COMPASS complex	histone-lysine N-methyltransferase activity|nucleotide binding|protein binding|RNA binding			ovary(2)|skin(1)	3						Acctccccctcccccgccgcct	0.574													12	14					0	0	1	0	0
ITGAX	3687	broad.mit.edu	37	16	31374047	31374047	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr16:31374047G>A	uc002ebu.1	+	12	1399	c.1332G>A	c.(1330-1332)AGG>AGA	p.R444R	ITGAX_uc002ebt.2_Silent_p.R444R|ITGAX_uc010vfk.1_Silent_p.R94R	NM_000887	NP_000878	P20702	ITAX_HUMAN	integrin alpha X precursor	444	FG-GAP 4.|Extracellular (Potential).				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration|organ morphogenesis	integrin complex	protein binding|receptor activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						GGCAATGGAGGATGAAGGCCG	0.657													17	21					0	0	1	0	0
ITGAD	3681	broad.mit.edu	37	16	31429471	31429471	+	Missense_Mutation	SNP	C	T	T	rs150295058	byFrequency	TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr16:31429471C>T	uc002ebv.1	+	21	2624	c.2575C>T	c.(2575-2577)CGC>TGC	p.R859C	ITGAD_uc010cap.1_Missense_Mutation_p.R860C	NM_005353	NP_005344	Q13349	ITAD_HUMAN	integrin, alpha D precursor	859	Extracellular (Potential).				cell-cell adhesion|cell-matrix adhesion|immune response|integrin-mediated signaling pathway	integrin complex	receptor activity			skin(1)	1						AAGAAGCAGCCGCTGCAGTGT	0.557													16	90					0	0	1	0	0
GPR97	222487	broad.mit.edu	37	16	57718006	57718006	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr16:57718006C>T	uc002emh.2	+	9	1147	c.1044C>T	c.(1042-1044)TTC>TTT	p.F348F	GPR97_uc010vhv.1_Silent_p.F228F|GPR97_uc010cdd.2_Intron|GPR97_uc010cde.2_Intron	NM_170776	NP_740746	Q86Y34	GPR97_HUMAN	G protein-coupled receptor 97 precursor	348	Helical; Name=3; (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(1)	1						TCCACTACTTCCTGCTCTGTG	0.587													25	29					0	0	1	0	0
CNGB1	1258	broad.mit.edu	37	16	57957262	57957262	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr16:57957262C>T	uc002emt.2	-	18	1623	c.1558G>A	c.(1558-1560)GAT>AAT	p.D520N	CNGB1_uc010cdh.2_Missense_Mutation_p.D514N	NM_001297	NP_001288	Q14028	CNGB1_HUMAN	cyclic nucleotide gated channel beta 1 isoform	520	Cytoplasmic (Potential).				sensory perception of smell	intracellular cyclic nucleotide activated cation channel complex	cAMP binding|intracellular cAMP activated cation channel activity			breast(3)|pancreas(1)	4						TCAGCCTCATCATCCTCAGAG	0.577													7	16					0	0	1	0	0
CHST4	10164	broad.mit.edu	37	16	71571480	71571480	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr16:71571480C>T	uc002fan.2	+	2	1081	c.900C>T	c.(898-900)CCC>CCT	p.P300P	CHST4_uc002fao.2_Silent_p.P300P	NM_005769	NP_005760	Q8NCG5	CHST4_HUMAN	carbohydrate (N-acetylglucosamine 6-O)	300	Lumenal (Potential).				cell-cell signaling|immune response|inflammatory response|N-acetylglucosamine metabolic process|protein sulfation	integral to membrane|intrinsic to Golgi membrane|trans-Golgi network	N-acetylglucosamine 6-O-sulfotransferase activity				0						AATTCTTGCCCCATCTTCAGA	0.557											OREG0023923	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	21	14					0	0	1	0	0
CNTNAP4	85445	broad.mit.edu	37	16	76587306	76587306	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr16:76587306C>T	uc002feu.1	+	24	3954	c.3569C>T	c.(3568-3570)CCT>CTT	p.P1190L	CNTNAP4_uc002fev.1_Missense_Mutation_p.P1054L|CNTNAP4_uc010chb.1_Missense_Mutation_p.P1117L|CNTNAP4_uc002fex.1_Missense_Mutation_p.P1193L	NM_033401	NP_207837	Q9C0A0	CNTP4_HUMAN	cell recognition protein CASPR4 isoform 1	1190	Extracellular (Potential).|Laminin G-like 4.				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(1)|pancreas(1)	2						CACCCAGACCCTGTCACTGTT	0.607													13	11					0	0	1	0	0
ADAMTS18	170692	broad.mit.edu	37	16	77398171	77398172	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr16:77398171_77398172CC>TT	uc002ffc.3	-	5	1304_1305	c.885_886GG>AA	c.(883-888)GTGGAA>GTAAAA	p.E296K	ADAMTS18_uc010chc.1_5'Flank|ADAMTS18_uc002ffe.1_5'UTR|ADAMTS18_uc010vni.1_RNA	NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	296	Peptidase M12B.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						ACGAGGGTTTCCACATTGAGGC	0.49													42	30					0	0	1	0	0
VAT1L	57687	broad.mit.edu	37	16	78005753	78005753	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr16:78005753G>A	uc002ffg.1	+	8	1181	c.1084G>A	c.(1084-1086)GAG>AAG	p.E362K		NM_020927	NP_065978	Q9HCJ6	VAT1L_HUMAN	vesicle amine transport protein 1 homolog (T.	362							oxidoreductase activity|zinc ion binding			central_nervous_system(1)	1						GCAGGTGAAGGAGGCCATGCA	0.512											OREG0023950	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	112	109					0	0	1	0	0
PKD1L2	114780	broad.mit.edu	37	16	81142814	81142814	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr16:81142814G>A	uc002fgh.1	-	43	7071	c.7071C>T	c.(7069-7071)ATC>ATT	p.I2357I	PKD1L2_uc002fgf.1_Silent_p.I157I|PKD1L2_uc002fgg.1_RNA	NM_052892	NP_443124	Q7Z442	PK1L2_HUMAN	polycystin 1-like 2 isoform a	2357	Channel pore-region.|Cytoplasmic (Potential).				neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity|sugar binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3						CGTAGTTGAAGATTCCCAGCT	0.323													6	3					0	0	1	0	0
KCNG4	93107	broad.mit.edu	37	16	84256406	84256406	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr16:84256406C>T	uc010voc.1	-	3	1098	c.977G>A	c.(976-978)AGC>AAC	p.S326N		NM_172347	NP_758857	Q8TDN1	KCNG4_HUMAN	potassium voltage-gated channel, subfamily G,	326						voltage-gated potassium channel complex	voltage-gated potassium channel activity			breast(3)	3						CAGGTAGGAGCTCCCGCTCGG	0.677													8	6					0	0	1	0	0
KCNG4	93107	broad.mit.edu	37	16	84270875	84270875	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr16:84270875G>A	uc010voc.1	-	2	338	c.217C>T	c.(217-219)CCC>TCC	p.P73S	KCNG4_uc002fhu.1_Missense_Mutation_p.P73S	NM_172347	NP_758857	Q8TDN1	KCNG4_HUMAN	potassium voltage-gated channel, subfamily G,	73	Cytoplasmic (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			breast(3)	3						GTGCTCCAGGGGAGGAGATAC	0.617													28	26					0	0	1	0	0
JPH3	57338	broad.mit.edu	37	16	87678539	87678539	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr16:87678539C>T	uc002fkd.2	+	2	1312	c.1058C>T	c.(1057-1059)CCC>CTC	p.P353L	JPH3_uc010vou.1_RNA	NM_020655	NP_065706	Q8WXH2	JPH3_HUMAN	junctophilin 3	353	Cytoplasmic (Potential).				calcium ion transport into cytosol|regulation of ryanodine-sensitive calcium-release channel activity	integral to membrane|junctional sarcoplasmic reticulum membrane|plasma membrane	protein binding			ovary(1)|pancreas(1)	2				BRCA - Breast invasive adenocarcinoma(80;0.0287)		AACCTCATCCCCCTGCGGGCC	0.662													20	17					0	0	1	0	0
OR1D4	8385	broad.mit.edu	37	17	2966231	2966231	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr17:2966231G>A	uc010vra.1	-	1	725	c.725C>T	c.(724-726)ACC>ATC	p.T242I		NM_003552	NP_003543			olfactory receptor, family 1, subfamily D,												0						TTGAAGGATGGTTCTGACAAT	0.488													7	53					0	0	1	0	0
OR1D2	4991	broad.mit.edu	37	17	2995435	2995435	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr17:2995435G>A	uc010vrb.1	-	1	856	c.856C>T	c.(856-858)CCC>TCC	p.P286S		NM_002548	NP_002539	P34982	OR1D2_HUMAN	olfactory receptor, family 1, subfamily D,	286	Helical; Name=7; (Potential).				cellular component movement|chemotaxis|protein import into nucleus, translocation|sensory perception of smell|single fertilization	integral to plasma membrane	olfactory receptor activity			ovary(1)	1						TAGATGAAGGGATTCATCATG	0.478													17	86					0	0	1	0	0
OR1A2	26189	broad.mit.edu	37	17	3101090	3101090	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr17:3101090C>T	uc002fvd.1	+	1	278	c.278C>T	c.(277-279)TCC>TTC	p.S93F		NM_012352	NP_036484	Q9Y585	OR1A2_HUMAN	olfactory receptor, family 1, subfamily A,	93	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2						AAGTTCATCTCCTTTGGGGGA	0.498													44	64					0	0	1	0	0
Unknown	0	broad.mit.edu	37	17	3144091	3144091	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr17:3144091G>A	uc002fvf.2	+	1	175	c.122G>A	c.(121-123)GGA>GAA	p.G41E						SubName: Full=Olfactory receptor OR17-1;																		ACGGTGCTGGGAAATGTGCTC	0.532													25	50					0	0	1	0	0
OR3A1	4994	broad.mit.edu	37	17	3195020	3195020	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr17:3195020G>A	uc002fvh.1	-	1	857	c.857C>T	c.(856-858)CCC>CTC	p.P286L		NM_002550	NP_002541	P47881	OR3A1_HUMAN	olfactory receptor, family 3, subfamily A,	286	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			kidney(2)|central_nervous_system(1)	3						GTTCAGCATGGGATTGATGAC	0.463													37	52					0	0	1	0	0
TRPV3	162514	broad.mit.edu	37	17	3458127	3458127	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr17:3458127C>T	uc002fvt.1	-	2	340	c.18G>A	c.(16-18)AAG>AAA	p.K6K	TRPV3_uc010vrj.1_5'UTR|TRPV3_uc010vrk.1_RNA|TRPV3_uc002fvr.2_Silent_p.K6K|TRPV3_uc002fvu.2_Silent_p.K6K	NM_145068	NP_659505	Q8NET8	TRPV3_HUMAN	transient receptor potential cation channel,	6	Cytoplasmic (Potential).					integral to membrane	calcium channel activity			ovary(4)	4					Menthol(DB00825)	GCACCATCTCCTTGGGGTGGG	0.622													5	26					0	0	1	0	0
P2RX5	5026	broad.mit.edu	37	17	3593723	3593723	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr17:3593723C>T	uc002fwi.2	-	5	815	c.531G>A	c.(529-531)CCG>CCA	p.P177P	P2RX5_uc002fwd.2_RNA|P2RX5_uc002fwh.1_Silent_p.P177P|P2RX5_uc010vrx.1_Silent_p.P117P|P2RX5_uc002fwj.2_Silent_p.P153P|P2RX5_uc002fwk.2_Silent_p.P177P|P2RX5_uc002fwl.2_Silent_p.P153P|P2RX5_uc002fwm.1_Silent_p.P177P	NM_002561	NP_002552	Q93086	P2RX5_HUMAN	purinergic receptor P2X5 isoform A	177	Extracellular (Potential).				nervous system development|positive regulation of calcium ion transport into cytosol|positive regulation of calcium-mediated signaling	integral to plasma membrane	ATP binding|extracellular ATP-gated cation channel activity|purinergic nucleotide receptor activity				0						CCACTCACTCCGGCCTGGAGC	0.667													4	3					0	0	1	0	0
ITGAE	3682	broad.mit.edu	37	17	3653727	3653727	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr17:3653727G>A	uc002fwo.3	-	16	2042	c.1943C>T	c.(1942-1944)TCC>TTC	p.S648F		NM_002208	NP_002199	P38570	ITAE_HUMAN	integrin, alpha E precursor	648	FG-GAP 7.|Extracellular (Potential).				cell adhesion|integrin-mediated signaling pathway	integrin complex	receptor activity			large_intestine(2)|breast(1)|pancreas(1)	4				UCEC - Uterine corpus endometrioid carcinoma (3;0.0813)		ACCAGCCATGGACATGCCGAA	0.622													9	41					0	0	1	0	0
ITGAE	3682	broad.mit.edu	37	17	3653729	3653729	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr17:3653729C>A	uc002fwo.3	-	16	2040	c.1941G>T	c.(1939-1941)ATG>ATT	p.M647I		NM_002208	NP_002199	P38570	ITAE_HUMAN	integrin, alpha E precursor	647	FG-GAP 7.|Extracellular (Potential).				cell adhesion|integrin-mediated signaling pathway	integrin complex	receptor activity			large_intestine(2)|breast(1)|pancreas(1)	4				UCEC - Uterine corpus endometrioid carcinoma (3;0.0813)		CAGCCATGGACATGCCGAAGT	0.632													9	40					0.000274275	0.000275653	1	1	0
TM4SF5	9032	broad.mit.edu	37	17	4685923	4685923	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr17:4685923C>T	uc002fyw.1	+	3	415	c.384C>T	c.(382-384)TTC>TTT	p.F128F		NM_003963	NP_003954	O14894	T4S5_HUMAN	transmembrane 4 superfamily member 5	128	Extracellular (Potential).					integral to plasma membrane				ovary(1)	1						GCTACCACTTCGAAGACACCG	0.607													24	32					0	0	1	0	0
ZNF232	7775	broad.mit.edu	37	17	5012230	5012230	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr17:5012230G>A	uc002gas.2	-	4	1289	c.535C>T	c.(535-537)CCA>TCA	p.P179S	ZNF232_uc002gar.1_Missense_Mutation_p.P206S|ZNF232_uc002gat.2_Missense_Mutation_p.P206S|ZNF232_uc010vsv.1_3'UTR	NM_014519	NP_055334	Q9UNY5	ZN232_HUMAN	zinc finger protein 232	179					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)|ovary(1)	2						CCACTCTTTGGGAAAGGCTGG	0.532													69	94					0	0	1	0	0
NUP88	4927	broad.mit.edu	37	17	5307546	5307546	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr17:5307546G>A	uc002gbo.1	-	7	1091	c.1065C>T	c.(1063-1065)TCC>TCT	p.S355S	NUP88_uc010vsx.1_Silent_p.S355S|NUP88_uc010cle.1_Silent_p.S354S|NUP88_uc010vsy.1_Silent_p.S355S	NM_002532	NP_002523	Q99567	NUP88_HUMAN	nucleoporin 88kDa	355					carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore	transporter activity			kidney(1)	1						GGTCAATCCTGGAATCCCAGG	0.378													16	51					0	0	1	0	0
FBXO39	162517	broad.mit.edu	37	17	6690673	6690673	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr17:6690673G>A	uc010vtg.1	+	4	1375	c.1255G>A	c.(1255-1257)GAA>AAA	p.E419K	FBXO39_uc010cls.1_Intron	NM_153230	NP_694962	Q8N4B4	FBX39_HUMAN	F-box protein 39	419										ovary(1)|skin(1)	2						GACCCTGCAGGAAATTTACAG	0.373													10	31					0	0	1	0	0
ASGR2	433	broad.mit.edu	37	17	7004911	7004911	+	Missense_Mutation	SNP	T	G	G			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr17:7004911T>G	uc002gep.3	-	9	1184	c.919A>C	c.(919-921)ACC>CCC	p.T307P	ASGR2_uc010vtk.1_Missense_Mutation_p.T144P|ASGR2_uc002gem.1_Missense_Mutation_p.T246P|ASGR2_uc002gen.1_Missense_Mutation_p.T288P|ASGR2_uc002geo.1_Missense_Mutation_p.T302P|ASGR2_uc002ger.3_Missense_Mutation_p.T307P|ASGR2_uc002geq.3_Missense_Mutation_p.T283P	NM_001181	NP_001172	P07307	ASGR2_HUMAN	asialoglycoprotein receptor 2 isoform a	307	Extracellular (Potential).				cell surface receptor linked signaling pathway|endocytosis	focal adhesion|integral to membrane|nucleolus	asialoglycoprotein receptor activity|protein binding|sugar binding			ovary(1)	1					Antihemophilic Factor(DB00025)	ACCTCGCCGGTGGCATTCCGC	0.572													13	45					0	0	1	0	0
ACAP1	9744	broad.mit.edu	37	17	7247224	7247224	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr17:7247224C>T	uc002ggd.2	+	8	824	c.618C>T	c.(616-618)GGC>GGT	p.G206G		NM_014716	NP_055531	Q15027	ACAP1_HUMAN	centaurin beta1	206	BAR.|Required for formation of endosomal tubules when overexpressed with PIP5K1C.				intracellular signal transduction|lipid metabolic process|protein transport|regulation of ARF GTPase activity		ARF GTPase activator activity|phospholipase C activity|protein binding|zinc ion binding			breast(2)|large_intestine(1)	3						TCCAGCAGGGCCATGAGGAGC	0.652													6	7					0	0	1	0	0
PLSCR3	57048	broad.mit.edu	37	17	7296236	7296236	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr17:7296236G>A	uc002ggm.1	-	6	752	c.543C>T	c.(541-543)GGC>GGT	p.G181G	PLSCR3_uc002ggl.2_Intron|PLSCR3_uc002ggq.1_Silent_p.G12G|PLSCR3_uc002ggn.1_Silent_p.G181G|PLSCR3_uc002ggo.1_Silent_p.G181G|PLSCR3_uc002ggp.1_Silent_p.G12G|PLSCR3_uc002ggr.1_Silent_p.G181G|PLSCR3_uc010cmg.1_Silent_p.G181G	NM_020360	NP_065093	Q9NRY6	PLS3_HUMAN	phospholipid scramblase 3	181	Cytoplasmic (By similarity).				phospholipid scrambling	integral to membrane|plasma membrane	calcium ion binding|calcium-dependent protein binding|phospholipid scramblase activity|SH3 domain binding				0		Prostate(122;0.173)				GTAGCACGTGGCCAATGGTGG	0.602													52	184					0	0	1	0	0
DNAH2	146754	broad.mit.edu	37	17	7630451	7630451	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr17:7630451C>T	uc002giu.1	+	3	254	c.240C>T	c.(238-240)TTC>TTT	p.F80F	DNAH2_uc002git.2_Silent_p.F80F|DNAH2_uc010vuk.1_Silent_p.F80F	NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	80	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				AGCCCCTCTTCCTTTCCCGAG	0.542													31	36					0	0	1	0	0
GUCY2D	3000	broad.mit.edu	37	17	7915542	7915542	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr17:7915542C>T	uc002gjt.2	+	9	1904	c.1830C>T	c.(1828-1830)CTC>CTT	p.L610L		NM_000180	NP_000171	Q02846	GUC2D_HUMAN	guanylate cyclase 2D, membrane (retina-specific)	610	Protein kinase.|Cytoplasmic (Potential).				intracellular signal transduction|receptor guanylyl cyclase signaling pathway|visual perception	integral to plasma membrane|nuclear outer membrane	ATP binding|GTP binding|guanylate cyclase activity|protein kinase activity|receptor activity			skin(1)	1		Prostate(122;0.157)				CTGCGGCCCTCTGGGAGGGCA	0.617													18	38					0	0	1	0	0
GUCY2D	3000	broad.mit.edu	37	17	7917207	7917207	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr17:7917207A>T	uc002gjt.2	+	12	2347	c.2273A>T	c.(2272-2274)CAG>CTG	p.Q758L		NM_000180	NP_000171	Q02846	GUC2D_HUMAN	guanylate cyclase 2D, membrane (retina-specific)	758	Protein kinase.|Cytoplasmic (Potential).				intracellular signal transduction|receptor guanylyl cyclase signaling pathway|visual perception	integral to plasma membrane|nuclear outer membrane	ATP binding|GTP binding|guanylate cyclase activity|protein kinase activity|receptor activity			skin(1)	1		Prostate(122;0.157)				GAAGTGGTGCAGAGGGTGCGG	0.617													21	58					0	0	1	0	0
ALOX12B	242	broad.mit.edu	37	17	7989454	7989454	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr17:7989454G>A	uc002gjy.1	-	2	493	c.232C>T	c.(232-234)CCC>TCC	p.P78S	hsa-mir-4314|MI0015846_5'Flank	NM_001139	NP_001130	O75342	LX12B_HUMAN	arachidonate 12-lipoxygenase, 12R type	78	PLAT.				epidermis development|leukotriene biosynthetic process		arachidonate 12-lipoxygenase activity|iron ion binding|lipoxygenase activity				0						GGGTCCTTGGGGAAGAAGGCG	0.592										Multiple Myeloma(8;0.094)			13	34					0	0	1	0	0
PIK3R5	23533	broad.mit.edu	37	17	8793303	8793303	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr17:8793303G>A	uc002glt.2	-	8	865	c.798C>T	c.(796-798)TTC>TTT	p.F266F	PIK3R5_uc010vuz.1_Silent_p.F266F|PIK3R5_uc002glu.3_5'UTR|PIK3R5_uc010coa.1_Intron|PIK3R5_uc010cob.1_5'UTR	NM_014308	NP_055123	Q8WYR1	PI3R5_HUMAN	phosphoinositide-3-kinase, regulatory subunit 5	266				AKTLAELEDIFTETAEAQELASGIGDAAEARRWLRTKLQAV GEKAGFPGVLDTAKPGKLHTIPIPVARCYTYSWSQDS -> TLQNQGSSIPSPSLSPGATPTAGARTALTSCRKSCSRNRSC SSQGSWEMMKRRKRRRRRWRRTWKLMGTVPREIPCSP (in Ref. 6; AAW63122).	platelet activation	cytosol|membrane|nucleus				breast(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5						ACACCCCAGGGAAGCCAGCTT	0.527													13	45					0	0	1	0	0
WDR16	146845	broad.mit.edu	37	17	9497554	9497554	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr17:9497554G>A	uc002gly.2	+	4	521	c.452G>A	c.(451-453)AGC>AAC	p.S151N	WDR16_uc002glz.2_Missense_Mutation_p.S83N|WDR16_uc010coc.2_Missense_Mutation_p.S161N	NM_145054	NP_659491	Q8N1V2	WDR16_HUMAN	WD40-repeat protein upregulated in HCC isoform	151						cytoplasm|intracellular membrane-bounded organelle	protein binding			skin(2)|ovary(1)|central_nervous_system(1)	4						ATCTGTGGCAGCCCTGCAGCC	0.478													14	86					0	0	1	0	0
MYH8	4626	broad.mit.edu	37	17	10304414	10304414	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr17:10304414G>A	uc002gmm.2	-	25	3298	c.3203C>T	c.(3202-3204)TCC>TTC	p.S1068F	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	1068	Potential.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						ATCCATTGTGGATTCTTGGGC	0.383									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				12	52					0	0	1	0	0
MYH8	4626	broad.mit.edu	37	17	10314238	10314238	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr17:10314238G>A	uc002gmm.2	-	15	1538	c.1443C>T	c.(1441-1443)ATC>ATT	p.I481I	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	481	Myosin head-like.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						TGGTGAAGTTGATGCACAGCT	0.383									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				20	65					0	0	1	0	0
MYH4	4622	broad.mit.edu	37	17	10366261	10366261	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr17:10366261G>A	uc002gmn.2	-	11	1040	c.929C>T	c.(928-930)CCA>CTA	p.P310L	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	310	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						GAAGTCATATGGGTTGGTGGT	0.418													34	43					0	0	1	0	0
MYH1	4619	broad.mit.edu	37	17	10404964	10404964	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr17:10404964C>T	uc002gmo.2	-	26	3389	c.3295G>A	c.(3295-3297)GAA>AAA	p.E1099K	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	1099	Potential.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						TGTTCATCTTCAATCTTGCTT	0.373													18	24					0	0	1	0	0
MYH3	4621	broad.mit.edu	37	17	10558352	10558352	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr17:10558352G>A	uc002gmq.1	-	2	107	c.30C>T	c.(28-30)TTC>TTT	p.F10F		NM_002470	NP_002461	P11055	MYH3_HUMAN	myosin, heavy chain 3, skeletal muscle,	10	Myosin head-like.				muscle filament sliding|muscle organ development	cytosol|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|central_nervous_system(2)|pancreas(1)	7						CAGCTATGCCGAACACTTCCA	0.562													40	56					0	0	1	0	0
DNAH9	1770	broad.mit.edu	37	17	11592929	11592929	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr17:11592929G>A	uc002gne.2	+	20	3858	c.3790G>A	c.(3790-3792)GAG>AAG	p.E1264K	DNAH9_uc010coo.2_Missense_Mutation_p.E558K	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	1264	Stem (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		CAGGCACATCGAGATCCAGCA	0.493													14	80					0	0	1	0	0
DNAH9	1770	broad.mit.edu	37	17	11631189	11631189	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr17:11631189G>A	uc002gne.2	+	28	5832	c.5764G>A	c.(5764-5766)GAT>AAT	p.D1922N	DNAH9_uc010coo.2_Missense_Mutation_p.D1216N	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	1922	AAA 1 (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		GGGCTGCTTTGATGAGTTTAA	0.488													6	32					0	0	1	0	0
TRPV2	51393	broad.mit.edu	37	17	16332214	16332214	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr17:16332214C>T	uc002gpy.2	+	10	1872	c.1505C>T	c.(1504-1506)GCG>GTG	p.A502V	TRPV2_uc002gpz.2_Missense_Mutation_p.A72V	NM_016113	NP_057197	Q9Y5S1	TRPV2_HUMAN	transient receptor potential cation channel,	502	Helical; (Potential).				sensory perception	integral to plasma membrane|melanosome	calcium channel activity			ovary(1)	1				UCEC - Uterine corpus endometrioid carcinoma (92;0.0837)		CTTGTGTCTGCGCTGGTGCTG	0.582													30	71					0	0	1	0	0
COPS3	8533	broad.mit.edu	37	17	17165341	17165341	+	Nonsense_Mutation	SNP	A	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr17:17165341A>T	uc002grd.2	-	7	792	c.701T>A	c.(700-702)TTA>TAA	p.L234*	COPS3_uc010vwv.1_Nonsense_Mutation_p.L214*|COPS3_uc010vww.1_Nonsense_Mutation_p.L104*	NM_003653	NP_003644	Q9UNS2	CSN3_HUMAN	COP9 constitutive photomorphogenic homolog	234	PCI.				cullin deneddylation|response to light stimulus|signal transduction	cytoplasm|signalosome	protein binding			skin(1)	1						TTTGCCAAGTAATATCAAAGA	0.338													8	26					0	0	1	0	0
MYO15A	51168	broad.mit.edu	37	17	18023654	18023654	+	Nonsense_Mutation	SNP	G	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr17:18023654G>T	uc010vxh.1	+	2	1878	c.1540G>T	c.(1540-1542)GAG>TAG	p.E514*		NM_016239	NP_057323	Q9UKN7	MYO15_HUMAN	myosin XV	514	Myosin head-like.				sensory perception of sound	cytoplasm|myosin complex|stereocilium	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|pancreas(1)|breast(1)|central_nervous_system(1)	9	all_neural(463;0.228)					GGACGAAGAAGAGGACGAGGA	0.672													4	26					0.00024832	0.000249693	1	1	0
RNF135	84282	broad.mit.edu	37	17	29325916	29325916	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr17:29325916C>T	uc002hfz.2	+	5	1142	c.1006C>T	c.(1006-1008)CGC>TGC	p.R336C	RNF135_uc002hga.2_3'UTR|RNF135_uc010csm.2_3'UTR|RNF135_uc002hgb.2_3'UTR	NM_032322	NP_115698	Q8IUD6	RN135_HUMAN	ring finger protein 135 isoform 1	336	B30.2/SPRY.				innate immune response|negative regulation of type I interferon production|positive regulation of interferon-beta production|regulation of innate immune response	cytosol	protein binding|ribonucleoprotein binding|ubiquitin-protein ligase activity|zinc ion binding	p.?(1)		skin(2)	2		all_cancers(10;8.65e-08)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Myeloproliferative disorder(56;0.0255)				GGAGATGAGCCGCGACCAGGT	0.552													16	22					0	0	1	0	0
NF1	4763	broad.mit.edu	37	17	29652877	29652877	+	Nonsense_Mutation	SNP	C	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr17:29652877C>A	uc002hgg.2	+	37	5208	c.4875C>A	c.(4873-4875)TAC>TAA	p.Y1625*	NF1_uc002hgh.2_Nonsense_Mutation_p.Y1604*|NF1_uc002hgi.1_Nonsense_Mutation_p.Y637*|NF1_uc010cso.2_5'UTR	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1	1625	CRAL-TRIO.				actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity			soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		TGCTGATATACCATGTCTTAC	0.343			D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			41	38					1.41504e-22	1.43876e-22	1	1	0
TMEM98	26022	broad.mit.edu	37	17	31258670	31258670	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr17:31258670G>A	uc002hhq.2	+	3	582	c.124G>A	c.(124-126)GAT>AAT	p.D42N	TMEM98_uc002hhr.2_Missense_Mutation_p.D42N	NM_015544	NP_056359	Q9Y2Y6	TMM98_HUMAN	transmembrane protein 98	42						endoplasmic reticulum|integral to membrane					0		Ovarian(249;0.182)|Breast(31;0.244)	BRCA - Breast invasive adenocarcinoma(9;0.0769)			GCAGCGCTATGATTCTAAGTG	0.547													11	5					0	0	1	0	0
ZPBP2	124626	broad.mit.edu	37	17	38029373	38029373	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr17:38029373C>T	uc002hte.2	+	6	855	c.702C>T	c.(700-702)ATC>ATT	p.I234I	ZPBP2_uc002htf.2_Silent_p.I212I	NM_199321	NP_955353	Q6X784	ZPBP2_HUMAN	zona pellucida binding protein 2 isoform 2	234					binding of sperm to zona pellucida	extracellular region				ovary(1)	1	Colorectal(19;0.000442)		Lung(15;0.00849)|LUSC - Lung squamous cell carcinoma(15;0.171)			ATCATAATATCCTCCAGGTGA	0.269													8	29					0	0	1	0	0
TNS4	84951	broad.mit.edu	37	17	38644978	38644978	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr17:38644978G>A	uc010cxb.2	-	3	847	c.683C>T	c.(682-684)TCC>TTC	p.S228F		NM_032865	NP_116254	Q8IZW8	TENS4_HUMAN	tensin 4 precursor	228	Ser-rich.				apoptosis|protein localization	cytoplasm|cytoskeleton|focal adhesion	actin binding			large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(5;5.91e-05)			GATGCTGGGGGAATTTGGGGG	0.647													27	13					0	0	1	0	0
KRT28	162605	broad.mit.edu	37	17	38950197	38950197	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr17:38950197G>A	uc002hvh.1	-	6	1146	c.1080C>T	c.(1078-1080)CAC>CAT	p.H360H		NM_181535	NP_853513	Q7Z3Y7	K1C28_HUMAN	keratin 25D	360	Rod.|Coil 2.					cytoplasm|intermediate filament	structural molecule activity			ovary(1)	1		Breast(137;0.000301)				TTCTGACCTGGTGCAGCTGCT	0.572													76	50					0	0	1	0	0
KRT32	3882	broad.mit.edu	37	17	39616440	39616440	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr17:39616440G>A	uc002hwr.2	-	7	1330	c.1269C>T	c.(1267-1269)TCC>TCT	p.S423S		NM_002278	NP_002269	Q14532	K1H2_HUMAN	keratin 32	423	Tail.				epidermis development	intermediate filament	protein binding|structural molecule activity				0		Breast(137;0.000812)				GCACGCATGGGGAGGGCACAC	0.602													7	8					0	0	1	0	0
KRT15	3866	broad.mit.edu	37	17	39674908	39674908	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr17:39674908C>T	uc002hwy.2	-	1	363	c.172G>A	c.(172-174)GGA>AGA	p.G58R	KRT15_uc002hwz.2_5'UTR|KRT15_uc002hxa.2_5'UTR|KRT15_uc002hxb.1_Intron	NM_002275	NP_002266	P19012	K1C15_HUMAN	keratin 15	58	Gly-rich.|Head.				epidermis development	intermediate filament	protein binding|structural constituent of cytoskeleton				0		Breast(137;0.000286)				CCATATCCTCCTCCTGACCCT	0.398													53	52					0	0	1	0	0
MPP2	4355	broad.mit.edu	37	17	41958620	41958620	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr17:41958620G>A	uc010wip.1	-	8	1103	c.1046C>T	c.(1045-1047)CCA>CTA	p.P349L	MPP2_uc002ien.1_Missense_Mutation_p.P321L|MPP2_uc010wim.1_Missense_Mutation_p.P293L|MPP2_uc002ieo.1_Missense_Mutation_p.P304L|MPP2_uc010win.1_Missense_Mutation_p.P165L|MPP2_uc010wio.1_Missense_Mutation_p.P293L	NM_005374	NP_005365	Q14168	MPP2_HUMAN	palmitoylated membrane protein 2	328					signal transduction	cell surface|integral to plasma membrane|membrane fraction	guanylate kinase activity				0		Breast(137;0.00314)		BRCA - Breast invasive adenocarcinoma(366;0.12)		ACCTGAGTTTGGTGTCAGCTC	0.602											OREG0024443	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	25	25					0	0	1	0	0
FZD2	2535	broad.mit.edu	37	17	42636526	42636526	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr17:42636526G>A	uc002igx.1	+	1	1602	c.1470G>A	c.(1468-1470)TGG>TGA	p.W490*		NM_001466	NP_001457	Q14332	FZD2_HUMAN	frizzled 2 precursor	490	Extracellular (Potential).				axonogenesis|brain development|canonical Wnt receptor signaling pathway|epithelial cell differentiation|G-protein signaling, coupled to cGMP nucleotide second messenger|gonad development|positive regulation of cGMP metabolic process|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription, DNA-dependent|vasculature development|Wnt receptor signaling pathway, calcium modulating pathway	apical part of cell|cytoplasm|integral to membrane|neuron projection membrane	G-protein coupled receptor activity|PDZ domain binding|Wnt receptor activity|Wnt-protein binding			ovary(2)|lung(1)	3		Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.189)		GCGAGCACTGGGAGCGCTCGT	0.642													11	11					0	0	1	0	0
EFTUD2	9343	broad.mit.edu	37	17	42937402	42937402	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr17:42937402G>A	uc002ihn.2	-	18	1992	c.1731C>T	c.(1729-1731)TTC>TTT	p.F577F	EFTUD2_uc010wje.1_Silent_p.F542F|EFTUD2_uc010wjf.1_Silent_p.F567F	NM_004247	NP_004238	Q15029	U5S1_HUMAN	elongation factor Tu GTP binding domain	577						Cajal body|catalytic step 2 spliceosome|cytoplasm|nuclear speck	GTP binding|GTPase activity|protein binding			ovary(1)	1		Prostate(33;0.109)				TCAAGGGTCGGAAAATCTGAG	0.502													35	27					0	0	1	0	0
HOXB3	3213	broad.mit.edu	37	17	46629749	46629749	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr17:46629749C>T	uc002inn.2	-	1	488	c.88G>A	c.(88-90)GAT>AAT	p.D30N	HOXB3_uc010wlm.1_Intron|HOXB3_uc010dbf.2_Missense_Mutation_p.D30N|HOXB3_uc010dbg.2_Missense_Mutation_p.D30N|HOXB3_uc002ino.2_Missense_Mutation_p.D30N|HOXB3_uc010wlk.1_Intron|HOXB3_uc010wll.1_Intron	NM_002146	NP_002137	P14651	HXB3_HUMAN	homeobox B3	30					angiogenesis	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						GGGGGGACATCGAAGCCGAAG	0.647													32	41					0	0	1	0	0
TTLL6	284076	broad.mit.edu	37	17	46863646	46863646	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr17:46863646C>T	uc010wlo.1	-	13	1676	c.1641G>A	c.(1639-1641)ATG>ATA	p.M547I	TTLL6_uc002iob.2_Missense_Mutation_p.M240I|TTLL6_uc010dbi.2_RNA|TTLL6_uc002ioc.2_Missense_Mutation_p.M300I|TTLL6_uc002iod.2_Missense_Mutation_p.M394I	NM_001130918	NP_001124390	Q8N841	TTLL6_HUMAN	tubulin tyrosine ligase-like family, member 6	499						cilium|microtubule basal body	ATP binding|tubulin binding|tubulin-tyrosine ligase activity				0						CCTTCTTCTTCATTTGGAAGG	0.517													183	312					0	0	1	0	0
CACNA1G	8913	broad.mit.edu	37	17	48697069	48697069	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr17:48697069C>T	uc002irk.1	+	34	6179	c.5807C>T	c.(5806-5808)TCC>TTC	p.S1936F	CACNA1G_uc002irj.1_Intron|CACNA1G_uc002irl.1_Intron|CACNA1G_uc002irm.1_Missense_Mutation_p.S1902F|CACNA1G_uc002irn.1_Intron|CACNA1G_uc002iro.1_Intron|CACNA1G_uc002irp.1_Missense_Mutation_p.S1936F|CACNA1G_uc002irq.1_Missense_Mutation_p.S1913F|CACNA1G_uc002irr.1_Intron|CACNA1G_uc002irs.1_Missense_Mutation_p.S1925F|CACNA1G_uc002irt.1_Intron|CACNA1G_uc002irv.1_Intron|CACNA1G_uc002irw.1_Intron|CACNA1G_uc002iru.1_Missense_Mutation_p.S1902F|CACNA1G_uc002irx.1_Intron|CACNA1G_uc002iry.1_Intron|CACNA1G_uc002irz.1_Intron|CACNA1G_uc002isa.1_Intron|CACNA1G_uc002isb.1_Intron|CACNA1G_uc002isc.1_Missense_Mutation_p.S1838F|CACNA1G_uc002isd.1_Intron|CACNA1G_uc002ise.1_Missense_Mutation_p.S1804F|CACNA1G_uc002isf.1_Missense_Mutation_p.S1831F|CACNA1G_uc002isg.1_Intron|CACNA1G_uc002ish.1_Intron|CACNA1G_uc002isi.1_Intron	NM_018896	NP_061496	O43497	CAC1G_HUMAN	voltage-dependent calcium channel alpha 1G	1936	Cytoplasmic (Potential).				axon guidance	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(1)	1	Breast(11;6.7e-17)		BRCA - Breast invasive adenocarcinoma(22;7.52e-09)		Ethosuximide(DB00593)|Flunarizine(DB04841)|Levetiracetam(DB01202)|Mibefradil(DB01388)|Pimozide(DB01100)|Trimethadione(DB00347)|Verapamil(DB00661)|Zonisamide(DB00909)	GACACCATATCCCTGCTGATC	0.662													8	17					0	0	1	0	0
KIF2B	84643	broad.mit.edu	37	17	51900875	51900875	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr17:51900875G>A	uc002iua.2	+	1	637	c.481G>A	c.(481-483)GAA>AAA	p.E161K	uc010wna.1_RNA	NM_032559	NP_115948	Q8N4N8	KIF2B_HUMAN	kinesin family member 2B	161	Potential.				blood coagulation|cell division|microtubule depolymerization|microtubule-based movement|mitotic prometaphase|regulation of chromosome segregation	condensed chromosome kinetochore|cytosol|microtubule|microtubule organizing center|nucleolus|spindle	ATP binding|microtubule motor activity			ovary(5)|skin(3)	8						GGAGCAGCGGGAAAAGCGCAG	0.547													43	82					0	0	1	0	0
EPX	8288	broad.mit.edu	37	17	56271442	56271442	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr17:56271442C>T	uc002ivq.2	+	5	669	c.583C>T	c.(583-585)CTT>TTT	p.L195F		NM_000502	NP_000493	P11678	PERE_HUMAN	eosinophil peroxidase preproprotein	195					hydrogen peroxide catabolic process		heme binding|peroxidase activity|protein binding			ovary(2)	2						CAATGGCTTCCTTCTCCCTCT	0.483													17	31					0	0	1	0	0
MPO	4353	broad.mit.edu	37	17	56357780	56357780	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr17:56357780G>A	uc002ivu.1	-	2	372	c.195C>T	c.(193-195)TCC>TCT	p.S65S		NM_000250	NP_000241	P05164	PERM_HUMAN	myeloperoxidase	65					anti-apoptosis|hydrogen peroxide catabolic process|low-density lipoprotein particle remodeling	extracellular space|lysosome|nucleus|stored secretory granule	chromatin binding|heme binding|heparin binding|peroxidase activity			ovary(2)|large_intestine(1)|pancreas(1)	4					Cefdinir(DB00535)	CCTCCTCCATGGAGCTCAGCA	0.647													22	31					0	0	1	0	0
MTMR4	9110	broad.mit.edu	37	17	56573634	56573634	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr17:56573634G>A	uc002iwj.2	-	16	1979	c.1869C>T	c.(1867-1869)CCC>CCT	p.P623P		NM_004687	NP_004678	Q9NYA4	MTMR4_HUMAN	myotubularin related protein 4	623						cytoplasm|membrane	metal ion binding|protein tyrosine phosphatase activity			skin(1)	1	Medulloblastoma(34;0.127)|all_neural(34;0.237)					TACGAGTCAGGGGGCTGCTTG	0.512													22	36					0	0	1	0	0
PPM1E	22843	broad.mit.edu	37	17	57057335	57057335	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr17:57057335G>A	uc002iwx.2	+	7	1338	c.1211G>A	c.(1210-1212)GGA>GAA	p.G404E	PPM1E_uc010ddd.2_Missense_Mutation_p.G167E	NM_014906	NP_055721	Q8WY54	PPM1E_HUMAN	protein phosphatase 1E	413	PP2C-like.				protein dephosphorylation	cytoplasm|nucleolus|protein serine/threonine phosphatase complex	metal ion binding|protein serine/threonine phosphatase activity			breast(3)|lung(1)|skin(1)	5	Medulloblastoma(34;0.127)|all_neural(34;0.237)		BRCA - Breast invasive adenocarcinoma(1;5.76e-11)			CTTCCCGCAGGAGATGCTGAA	0.483													17	28					0	0	1	0	0
HEATR6	63897	broad.mit.edu	37	17	58121464	58121464	+	Missense_Mutation	SNP	A	C	C			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr17:58121464A>C	uc002iyk.1	-	20	3023	c.3006T>G	c.(3004-3006)AAT>AAG	p.N1002K	HEATR6_uc010ddk.1_Missense_Mutation_p.N541K|HEATR6_uc010wos.1_Missense_Mutation_p.N722K	NM_022070	NP_071353	Q6AI08	HEAT6_HUMAN	HEAT repeat containing 6	1002							binding			ovary(1)|skin(1)	2	all_cancers(5;2.25e-13)|Breast(5;4.84e-25)|all_neural(34;0.0878)|Medulloblastoma(34;0.0922)		BRCA - Breast invasive adenocarcinoma(1;5.93e-19)|Epithelial(12;7.59e-12)|all cancers(12;1.26e-10)			ATGTCAGGGCATTGTAGGCCT	0.547													27	65					0	0	1	0	0
TBX2	6909	broad.mit.edu	37	17	59485556	59485556	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr17:59485556C>T	uc010wox.1	+	7	2109	c.1828C>T	c.(1828-1830)CCC>TCC	p.P610S	TBX2_uc002ize.2_3'UTR|TBX2_uc002izg.2_Missense_Mutation_p.P456S	NM_005994	NP_005985	Q13207	TBX2_HUMAN	T-box 2	610					cell aging|positive regulation of cell proliferation		sequence-specific DNA binding				0						CTCCCGGAGCCCCTTCCTGGG	0.438													7	27					0	0	1	0	0
TANC2	26115	broad.mit.edu	37	17	61497654	61497654	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr17:61497654C>T	uc002jal.3	+	25	4334	c.4311C>T	c.(4309-4311)CTC>CTT	p.L1437L	TANC2_uc010wpe.1_3'UTR|TANC2_uc002jao.3_Silent_p.L548L	NM_025185	NP_079461	Q9HCD6	TANC2_HUMAN	tetratricopeptide repeat, ankyrin repeat and	1437							binding			ovary(2)	2						GCCAGGGGCTCCCGGTCATCC	0.562													14	14					0	0	1	0	0
POLG2	11232	broad.mit.edu	37	17	62489078	62489078	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr17:62489078A>T	uc002jei.2	-	2	706	c.623T>A	c.(622-624)CTT>CAT	p.L208H	POLG2_uc010deg.1_Missense_Mutation_p.L208H	NM_007215	NP_009146	Q9UHN1	DPOG2_HUMAN	DNA polymerase subunit gamma-2, mitochondrial	208					DNA repair|DNA-dependent DNA replication|glycyl-tRNA aminoacylation	mitochondrial chromosome	ATP binding|DNA-directed DNA polymerase activity|glycine-tRNA ligase activity|identical protein binding|single-stranded DNA binding			central_nervous_system(1)	1	Breast(5;2.15e-14)		BRCA - Breast invasive adenocarcinoma(8;4.97e-11)			AATCTGAGCAAGGCCATAAGG	0.378													16	43					0	0	1	0	0
ABCA9	10350	broad.mit.edu	37	17	67020377	67020377	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr17:67020377C>T	uc002jhu.2	-	17	2402	c.2259G>A	c.(2257-2259)TTG>TTA	p.L753L	ABCA9_uc010dez.2_Silent_p.L753L	NM_080283	NP_525022	Q8IUA7	ABCA9_HUMAN	ATP-binding cassette, sub-family A, member 9	753					transport	integral to membrane	ATP binding|ATPase activity			ovary(4)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6	Breast(10;1.47e-12)					TTGTCCTTTCCAAAGGCAAAA	0.358													16	34					0	0	1	0	0
DNAI2	64446	broad.mit.edu	37	17	72281237	72281237	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr17:72281237G>A	uc002jkf.2	+	3	341	c.242G>A	c.(241-243)TGG>TAG	p.W81*	DNAI2_uc002jkg.2_RNA|DNAI2_uc010dfp.2_RNA	NM_023036	NP_075462	Q9GZS0	DNAI2_HUMAN	dynein, axonemal, intermediate polypeptide 2	81					cilium assembly	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	microtubule motor activity			ovary(2)|central_nervous_system(1)	3						GAGGGGGGCTGGCCCAAGGAC	0.572									Kartagener_syndrome				49	41					0	0	1	0	0
GPRC5C	55890	broad.mit.edu	37	17	72436157	72436157	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr17:72436157C>A	uc002jks.2	+	1	281	c.242C>A	c.(241-243)ACC>AAC	p.T81N	GPRC5C_uc002jkp.2_Missense_Mutation_p.T126N|GPRC5C_uc002jkq.2_Missense_Mutation_p.T126N|GPRC5C_uc002jkr.2_Missense_Mutation_p.T93N|GPRC5C_uc002jkt.2_Missense_Mutation_p.T81N	NM_018653	NP_061123	Q9NQ84	GPC5C_HUMAN	G protein-coupled receptor family C, group 5,	81	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to plasma membrane	G-protein coupled receptor activity|protein binding			ovary(2)|prostate(1)|central_nervous_system(1)|pancreas(1)	5						GTGCAGGACACCAAGAAACGG	0.627													20	68					2.94398e-08	2.9722e-08	1	1	0
QRICH2	84074	broad.mit.edu	37	17	74288614	74288614	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr17:74288614G>A	uc002jrd.1	-	4	1876	c.1696C>T	c.(1696-1698)CAA>TAA	p.Q566*	QRICH2_uc010wsz.1_Nonsense_Mutation_p.Q492*|QRICH2_uc010dgw.1_Intron	NM_032134	NP_115510	Q9H0J4	QRIC2_HUMAN	glutamine rich 2	566	Gln-rich.						protein binding			ovary(1)|pancreas(1)|lung(1)|central_nervous_system(1)|skin(1)	5						ACTCCAGGTTGGACCAAACCA	0.532													38	53					0	0	1	0	0
USP36	57602	broad.mit.edu	37	17	76800037	76800037	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr17:76800037G>A	uc002jvz.1	-	16	2565	c.2240C>T	c.(2239-2241)TCA>TTA	p.S747L	USP36_uc002jwa.1_Missense_Mutation_p.S747L|USP36_uc002jwb.1_Intron|USP36_uc002jwc.1_Missense_Mutation_p.S447L|USP36_uc002jvy.1_5'Flank	NM_025090	NP_079366	Q9P275	UBP36_HUMAN	ubiquitin specific peptidase 36	747					ubiquitin-dependent protein catabolic process	nucleolus	cysteine-type peptidase activity|ubiquitin thiolesterase activity			lung(2)|ovary(1)|breast(1)|kidney(1)	5			BRCA - Breast invasive adenocarcinoma(99;0.000842)|OV - Ovarian serous cystadenocarcinoma(97;0.151)			GCGGCTGGATGATTGGGGAGC	0.612													42	34					0	0	1	0	0
CCDC40	55036	broad.mit.edu	37	17	78039341	78039341	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr17:78039341G>A	uc010dht.2	+	10	1525	c.1498G>A	c.(1498-1500)GCC>ACC	p.A500T	CCDC40_uc010wub.1_Intron|CCDC40_uc002jxm.3_Missense_Mutation_p.A283T	NM_017950	NP_060420	Q4G0X9	CCD40_HUMAN	coiled-coil domain containing 40	500					axonemal dynein complex assembly|ciliary cell motility|cilium movement involved in determination of left/right asymmetry|flagellar cell motility	cilium|cytoplasm				ovary(3)	3	all_neural(118;0.167)		OV - Ovarian serous cystadenocarcinoma(97;0.0292)|BRCA - Breast invasive adenocarcinoma(99;0.149)			GCAGCAATGGGCCAGCAGCCT	0.657													41	54					0	0	1	0	0
NPTX1	4884	broad.mit.edu	37	17	78445621	78445621	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr17:78445621G>A	uc002jyp.1	-	4	1146	c.988C>T	c.(988-990)CAG>TAG	p.Q330*		NM_002522	NP_002513	Q15818	NPTX1_HUMAN	neuronal pentraxin I precursor	330	Pentaxin.				central nervous system development|synaptic transmission|transport	transport vesicle	metal ion binding				0	all_neural(118;0.0538)		BRCA - Breast invasive adenocarcinoma(99;0.0232)|OV - Ovarian serous cystadenocarcinoma(97;0.0487)			GTGCCATCCTGGTAGGCCTCC	0.627													17	28					0	0	1	0	0
ARL16	339231	broad.mit.edu	37	17	79650825	79650826	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr17:79650825_79650826GG>AA	uc002kbf.2	-	1	129_130	c.30_31CC>TT	c.(28-33)AGCCGC>AGTTGC	p.R11C	ARL16_uc002kbe.2_5'Flank|HGS_uc010wus.1_5'Flank|HGS_uc002kbg.2_5'Flank	NM_001040025	NP_001035114	Q0P5N6	ARL16_HUMAN	ADP-ribosylation factor-like 16	11							GTP binding				0	all_neural(118;0.0878)|all_lung(278;0.23)		BRCA - Breast invasive adenocarcinoma(99;0.0101)|OV - Ovarian serous cystadenocarcinoma(97;0.0739)			TCGGCGCCGCGGCTCAAGGCCC	0.629													10	22					0	0	1	0	0
EPB41L3	23136	broad.mit.edu	37	18	5406803	5406803	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr18:5406803G>A	uc002kmt.1	-	16	2408	c.2322C>T	c.(2320-2322)CCC>CCT	p.P774P	EPB41L3_uc010wzh.1_Silent_p.P605P|EPB41L3_uc002kmu.1_Silent_p.P593P|EPB41L3_uc010dkq.1_Silent_p.P484P|EPB41L3_uc002kms.1_Silent_p.P46P|EPB41L3_uc010wze.1_Silent_p.P46P|EPB41L3_uc010wzf.1_Silent_p.P46P|EPB41L3_uc010wzg.1_Silent_p.P46P|EPB41L3_uc010dkr.2_Silent_p.P166P	NM_012307	NP_036439	Q9Y2J2	E41L3_HUMAN	erythrocyte membrane protein band 4.1-like 3	774	Spectrin--actin-binding (Potential).				cortical actin cytoskeleton organization	cell-cell junction|cytoplasm|cytoskeleton|extrinsic to membrane	actin binding|structural molecule activity			ovary(5)	5						GTTCGATCATGGGGGCATCCT	0.542													20	36					0	0	1	0	0
ARHGAP28	79822	broad.mit.edu	37	18	6873451	6873451	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr18:6873451G>A	uc010wzi.1	+	7	705	c.467G>A	c.(466-468)GGA>GAA	p.G156E	ARHGAP28_uc002knc.2_Missense_Mutation_p.G281E|ARHGAP28_uc002knd.2_Missense_Mutation_p.G174E|ARHGAP28_uc002kne.2_Missense_Mutation_p.G174E|ARHGAP28_uc002knf.2_Missense_Mutation_p.G165E			B4DXL2	B4DXL2_HUMAN	SubName: Full=Putative uncharacterized protein ARHGAP28;	156					signal transduction	intracellular				pancreas(1)	1		Colorectal(10;0.168)				ACTGAAGCAGGAGATCTGTCT	0.348													30	35					0	0	1	0	0
ANKRD12	23253	broad.mit.edu	37	18	9258459	9258459	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr18:9258459C>T	uc002knv.2	+	9	5451	c.5194C>T	c.(5194-5196)CCT>TCT	p.P1732S	ANKRD12_uc002knw.2_Missense_Mutation_p.P1709S|ANKRD12_uc002knx.2_Missense_Mutation_p.P1709S|ANKRD12_uc010dkx.1_Missense_Mutation_p.P1439S	NM_015208	NP_056023	Q6UB98	ANR12_HUMAN	ankyrin repeat domain 12 isoform 1	1732						nucleus				ovary(2)|central_nervous_system(1)	3						AAACCAAATCCCTCAAAGAAT	0.343													8	16					0	0	1	0	0
LAMA3	3909	broad.mit.edu	37	18	21494382	21494383	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr18:21494382_21494383GG>AA	uc002kuq.2	+	57	7424_7425	c.7338_7339GG>AA	c.(7336-7341)CGGGAC>CGAAAC	p.D2447N	LAMA3_uc002kur.2_Missense_Mutation_p.D2391N|LAMA3_uc002kus.3_Missense_Mutation_p.D838N|LAMA3_uc002kut.3_Missense_Mutation_p.D782N	NM_198129	NP_937762	Q16787	LAMA3_HUMAN	laminin alpha 3 subunit isoform 1	2447	Laminin G-like 1.				cell adhesion|epidermis development|hemidesmosome assembly|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|skin(2)|central_nervous_system(1)	11	all_cancers(21;7.81e-05)|all_epithelial(16;4.45e-07)|Lung NSC(20;0.00156)|all_lung(20;0.00508)|Colorectal(14;0.0202)|Ovarian(20;0.17)				Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	AGGCCTCCCGGGACTACATCGG	0.52													24	33					0	0	1	0	0
CHST9	83539	broad.mit.edu	37	18	24496451	24496451	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr18:24496451C>T	uc002kwd.2	-	5	1302	c.1104G>A	c.(1102-1104)GGG>GGA	p.G368G	C18orf16_uc002kwb.2_Intron|C18orf16_uc010xbm.1_Intron|CHST9_uc002kwc.2_Silent_p.G283G|CHST9_uc002kwe.2_Silent_p.G368G	NM_031422	NP_113610	Q7L1S5	CHST9_HUMAN	GalNAc-4-sulfotransferase 2	368	Lumenal (Potential).				carbohydrate biosynthetic process|glycosaminoglycan metabolic process|hormone biosynthetic process|proteoglycan biosynthetic process|sulfur compound metabolic process	extracellular region|Golgi membrane|integral to membrane	N-acetylgalactosamine 4-O-sulfotransferase activity			ovary(2)|skin(1)	3	all_lung(6;0.0145)|Ovarian(20;0.124)					TCTCAAATTTCCCTACAAAAT	0.428													40	62					0	0	1	0	0
DSC2	1824	broad.mit.edu	37	18	28648105	28648105	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr18:28648105C>T	uc002kwl.3	-	16	3036	c.2582G>A	c.(2581-2583)GGA>GAA	p.G861E	DSC2_uc002kwk.3_3'UTR	NM_024422	NP_077740	Q02487	DSC2_HUMAN	desmocollin 2 isoform Dsc2a preproprotein	861	Cytoplasmic (Potential).				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(10;0.0241)			CGATCCTCTTCCTTCATAGTT	0.413													16	30					0	0	1	0	0
DSC2	1824	broad.mit.edu	37	18	28648980	28648980	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr18:28648980G>A	uc002kwl.3	-	15	2842	c.2388C>T	c.(2386-2388)TCC>TCT	p.S796S	DSC2_uc002kwk.3_Silent_p.S796S	NM_024422	NP_077740	Q02487	DSC2_HUMAN	desmocollin 2 isoform Dsc2a preproprotein	796	Cytoplasmic (Potential).				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(10;0.0241)			CCCCCCGGCAGGATTCCGAGG	0.567													9	55					0	0	1	0	0
DSC1	1823	broad.mit.edu	37	18	28712584	28712584	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr18:28712584C>T	uc002kwn.2	-	14	2447	c.2185G>A	c.(2185-2187)GCC>ACC	p.A729T	DSC1_uc002kwm.2_Missense_Mutation_p.A729T	NM_024421	NP_077739	Q08554	DSC1_HUMAN	desmocollin 1 isoform Dsc1a preproprotein	729	Cytoplasmic (Potential).				homophilic cell adhesion	desmosome|gap junction|integral to membrane|membrane fraction	calcium ion binding			ovary(3)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(10;0.00778)			TTTTGCTGGGCTATGTCTTCT	0.343													22	43					0	0	1	0	0
DSC1	1823	broad.mit.edu	37	18	28725604	28725604	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr18:28725604G>A	uc002kwn.2	-	7	1171	c.909C>T	c.(907-909)ATC>ATT	p.I303I	DSC1_uc002kwm.2_Silent_p.I303I	NM_024421	NP_077739	Q08554	DSC1_HUMAN	desmocollin 1 isoform Dsc1a preproprotein	303	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	desmosome|gap junction|integral to membrane|membrane fraction	calcium ion binding			ovary(3)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(10;0.00778)			TAGTTGTGGTGATGACACCGG	0.378													24	45					0	0	1	0	0
DSG4	147409	broad.mit.edu	37	18	28971154	28971154	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr18:28971154C>T	uc002kwq.2	+	7	933	c.798C>T	c.(796-798)TTC>TTT	p.F266F	DSG4_uc002kwr.2_Silent_p.F266F	NM_177986	NP_817123	Q86SJ6	DSG4_HUMAN	desmoglein 4 isoform 2 preproprotein	266	Cadherin 2.|Extracellular (Potential).		Missing (in LAH1).		homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(3)	8			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			ACGATAATTTCCCCACCTTAG	0.393													22	37					0	0	1	0	0
KIAA1012	22878	broad.mit.edu	37	18	29453458	29453458	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr18:29453458G>A	uc002kxc.3	-	14	2361	c.1997C>T	c.(1996-1998)CCT>CTT	p.P666L	KIAA1012_uc002kxb.3_Missense_Mutation_p.P612L|KIAA1012_uc002kxd.3_RNA	NM_014939	NP_055754	Q9Y2L5	TPPC8_HUMAN	hypothetical protein LOC22878	666					ER to Golgi vesicle-mediated transport	cis-Golgi network					0						ATACGGTAAAGGAAGCTGTGG	0.363													5	25					0	0	1	0	0
C18orf34	374864	broad.mit.edu	37	18	30977158	30977158	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr18:30977158C>T	uc002kxn.2	-	3	215	c.73G>A	c.(73-75)GAA>AAA	p.E25K	C18orf34_uc010xbr.1_Missense_Mutation_p.E25K|C18orf34_uc010dmf.1_Missense_Mutation_p.E25K|C18orf34_uc002kxo.2_Missense_Mutation_p.E25K|C18orf34_uc002kxp.2_Missense_Mutation_p.E25K	NM_001105528	NP_001098998	Q5BJE1	CR034_HUMAN	hypothetical protein LOC374864 isoform 1	25										ovary(1)	1						GCCTTTACTTCCTGACATGTT	0.328													12	37					0	0	1	0	0
NOL4	8715	broad.mit.edu	37	18	31537429	31537429	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr18:31537429G>A	uc010dmi.2	-	8	1518	c.1289C>T	c.(1288-1290)TCT>TTT	p.S430F	NOL4_uc010xbs.1_Missense_Mutation_p.S145F|NOL4_uc002kxr.3_Intron|NOL4_uc010xbt.1_Missense_Mutation_p.S356F|NOL4_uc010dmh.2_Intron|NOL4_uc010xbu.1_Intron|NOL4_uc002kxt.3_Intron|NOL4_uc010xbv.1_Intron	NM_003787	NP_003778	O94818	NOL4_HUMAN	nucleolar protein 4	430						nucleolus	RNA binding			ovary(3)	3						GGGCTGCTTAGAGATTGGGAC	0.483													14	29					0	0	1	0	0
CELF4	56853	broad.mit.edu	37	18	34852987	34852987	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr18:34852987G>A	uc002lae.2	-	7	1337	c.941C>T	c.(940-942)CCA>CTA	p.P314L	CELF4_uc010dnd.1_Missense_Mutation_p.P312L|CELF4_uc002lag.2_Missense_Mutation_p.P304L|CELF4_uc002laf.2_Missense_Mutation_p.P309L|CELF4_uc002lai.2_Missense_Mutation_p.P299L|CELF4_uc002lah.1_Missense_Mutation_p.P39L|CELF4_uc002laj.1_Silent_p.P149P	NM_020180	NP_064565	Q9BZC1	CELF4_HUMAN	bruno-like 4, RNA binding protein isoform 1	314					embryo development|germ cell development|regulation of alternative nuclear mRNA splicing, via spliceosome	cytoplasm|nucleus	BRE binding|nucleotide binding|translation repressor activity, nucleic acid binding			ovary(2)	2						ACCTGAGGTTGGGGTCATAGG	0.652													15	26					0	0	1	0	0
KIAA1632	57724	broad.mit.edu	37	18	43464662	43464662	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr18:43464662C>T	uc002lbm.2	-	30	5324	c.5224G>A	c.(5224-5226)GAG>AAG	p.E1742K	KIAA1632_uc010xcq.1_Missense_Mutation_p.E296K|KIAA1632_uc010xcr.1_RNA|KIAA1632_uc010xcs.1_RNA|KIAA1632_uc002lbn.2_Missense_Mutation_p.E617K	NM_020964	NP_066015	Q9HCE0	EPG5_HUMAN	hypothetical protein LOC57724	1742					autophagy						0						TGTATGAACTCTGCAGGTGCA	0.433													14	43					0	0	1	0	0
KIAA1632	57724	broad.mit.edu	37	18	43492290	43492290	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr18:43492290G>A	uc002lbm.2	-	22	4048	c.3948C>T	c.(3946-3948)TTC>TTT	p.F1316F	KIAA1632_uc002lbo.1_Silent_p.F1316F|KIAA1632_uc010xcq.1_5'UTR|KIAA1632_uc010xcr.1_RNA|KIAA1632_uc010xcs.1_RNA|KIAA1632_uc002lbn.2_Silent_p.F191F	NM_020964	NP_066015	Q9HCE0	EPG5_HUMAN	hypothetical protein LOC57724	1316					autophagy						0						GATACAGAAGGAAGAACTTCT	0.527													9	47					0	0	1	0	0
RNF165	494470	broad.mit.edu	37	18	44013385	44013385	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr18:44013385C>T	uc002lcb.1	+	2	345	c.294C>T	c.(292-294)TTC>TTT	p.F98F	RNF165_uc002lby.1_Silent_p.F31F|RNF165_uc010dnn.1_Intron	NM_152470	NP_689683	Q6ZSG1	RN165_HUMAN	ring finger protein 165	98							zinc ion binding				0				READ - Rectum adenocarcinoma(1;0.0873)		GTCCCTCCTTCCTACCTCAGG	0.677													13	33					0	0	1	0	0
RNF165	494470	broad.mit.edu	37	18	44027629	44027629	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr18:44027629C>T	uc002lcb.1	+	4	640	c.589C>T	c.(589-591)CCC>TCC	p.P197S	RNF165_uc002lby.1_Missense_Mutation_p.P130S|RNF165_uc010dnn.1_5'UTR	NM_152470	NP_689683	Q6ZSG1	RN165_HUMAN	ring finger protein 165	197							zinc ion binding				0				READ - Rectum adenocarcinoma(1;0.0873)		GCACCACTTTCCCAGAAACTC	0.567													52	82					0	0	1	0	0
TCEB3B	51224	broad.mit.edu	37	18	44560283	44560283	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr18:44560283C>T	uc002lcr.1	-	1	1706	c.1353G>A	c.(1351-1353)CCG>CCA	p.P451P	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lco.2_Intron|KATNAL2_uc002lcp.3_Intron	NM_016427	NP_057511	Q8IYF1	ELOA2_HUMAN	elongin A2	451					regulation of transcription elongation, DNA-dependent|transcription from RNA polymerase II promoter	integral to membrane|nucleus	DNA binding			ovary(2)|large_intestine(1)|pancreas(1)	4						GCACCGTTTTCGGCCCGGCGG	0.602													19	51					0	0	1	0	0
SMAD7	4092	broad.mit.edu	37	18	46447842	46447842	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr18:46447842G>A	uc002ldg.2	-	4	1468	c.1181C>T	c.(1180-1182)ACC>ATC	p.T394I	SMAD7_uc002ldf.2_Missense_Mutation_p.T206I|SMAD7_uc010xde.1_Missense_Mutation_p.T179I	NM_005904	NP_005895	O15105	SMAD7_HUMAN	SMAD family member 7	394	MH2.				adherens junction assembly|artery morphogenesis|BMP signaling pathway|cellular protein complex localization|negative regulation of BMP signaling pathway|negative regulation of cell migration|negative regulation of epithelial to mesenchymal transition|negative regulation of pathway-restricted SMAD protein phosphorylation|negative regulation of peptidyl-serine phosphorylation|negative regulation of peptidyl-threonine phosphorylation|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription by competitive promoter binding|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|negative regulation of ubiquitin-protein ligase activity|pathway-restricted SMAD protein phosphorylation|positive regulation of anti-apoptosis|positive regulation of cell-cell adhesion|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein ubiquitination|protein stabilization|regulation of activin receptor signaling pathway|response to laminar fluid shear stress|transforming growth factor beta receptor signaling pathway|ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	centrosome|cytosol|nucleolus|plasma membrane|transcription factor complex	activin binding|beta-catenin binding|I-SMAD binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transforming growth factor beta receptor, inhibitory cytoplasmic mediator activity|type I transforming growth factor beta receptor binding|ubiquitin protein ligase binding				0	Colorectal(1;0.0518)					GATCTGCACGGTAAAGCCCGT	0.587													7	27					0	0	1	0	0
CCDC11	220136	broad.mit.edu	37	18	47765069	47765069	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr18:47765069C>T	uc002lee.2	-	7	1311	c.1220G>A	c.(1219-1221)CGA>CAA	p.R407Q		NM_145020	NP_659457	Q96M91	CCD11_HUMAN	coiled-coil domain containing 11	407	Potential.									ovary(1)|pancreas(1)|skin(1)	3				STAD - Stomach adenocarcinoma(97;2.66e-05)|Colorectal(21;7.57e-05)|Lung(128;0.00932)|READ - Rectum adenocarcinoma(32;0.164)		TTTAGCTTCTCGTTGCACTAA	0.353													10	21					0	0	1	0	0
MAPK4	5596	broad.mit.edu	37	18	48256213	48256213	+	Missense_Mutation	SNP	G	A	A	rs7506742		TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr18:48256213G>A	uc002lev.2	+	6	2753	c.1753G>A	c.(1753-1755)GAA>AAA	p.E585K	MAPK4_uc010xdm.1_Missense_Mutation_p.E374K|MAPK4_uc010doz.2_3'UTR	NM_002747	NP_002738	P31152	MK04_HUMAN	mitogen-activated protein kinase 4	585					cell cycle		ATP binding|MAP kinase activity			lung(4)|skin(2)	6		Colorectal(6;0.0297)		Colorectal(21;0.156)		CTTCTCCAAAGAAAGGTGGTG	0.687													5	20					0	0	1	0	0
SERPINB7	8710	broad.mit.edu	37	18	61463602	61463602	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr18:61463602G>A	uc002ljl.2	+	5	535	c.439G>A	c.(439-441)GAA>AAA	p.E147K	SERPINB7_uc002ljm.2_Missense_Mutation_p.E147K|SERPINB7_uc010xet.1_Missense_Mutation_p.E130K|SERPINB7_uc010dqg.2_Missense_Mutation_p.E147K	NM_001040147	NP_001035237	O75635	SPB7_HUMAN	serine (or cysteine) proteinase inhibitor, clade	147					regulation of proteolysis	cytoplasm	serine-type endopeptidase inhibitor activity			lung(2)|central_nervous_system(1)	3		Esophageal squamous(42;0.129)				TAAGTGGGTTGAAAATGAAAC	0.353													11	33					0	0	1	0	0
FBXO15	201456	broad.mit.edu	37	18	71797846	71797846	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr18:71797846G>A	uc002lle.2	-	4	488	c.152C>T	c.(151-153)TCA>TTA	p.S51L	FBXO15_uc002llf.2_Missense_Mutation_p.S127L	NM_152676	NP_689889	Q8NCQ5	FBX15_HUMAN	F-box protein 15 isoform 1	51										ovary(2)|pancreas(1)	3		Esophageal squamous(42;0.103)|Prostate(75;0.173)		BRCA - Breast invasive adenocarcinoma(31;0.143)		TTTCCAATTTGATCTTGCAGG	0.358													11	13					0	0	1	0	0
CYB5A	1528	broad.mit.edu	37	18	71920842	71920842	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr18:71920842G>A	uc002lli.2	-	5	493	c.382C>T	c.(382-384)CGC>TGC	p.R128C	CYB5A_uc002llh.2_3'UTR	NM_148923	NP_683725	P00167	CYB5_HUMAN	cytochrome b-5 isoform 1	128	Helical; (Potential).				electron transport chain|water-soluble vitamin metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome|mitochondrial outer membrane	aldo-keto reductase (NADP) activity|cytochrome-c oxidase activity|enzyme binding|heme binding				0		Esophageal squamous(42;0.0749)|Prostate(75;0.157)|Melanoma(33;0.211)			Methoxyflurane(DB01028)	ATGTATAGGCGATACATCAAG	0.507													19	29					0	0	1	0	0
TSHZ1	10194	broad.mit.edu	37	18	72999833	72999833	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr18:72999833T>C	uc002lly.2	+	2	2899	c.2336T>C	c.(2335-2337)GTG>GCG	p.V779A		NM_005786	NP_005777	Q6ZSZ6	TSH1_HUMAN	teashirt family zinc finger 1	824						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Esophageal squamous(42;0.129)|Prostate(75;0.142)|Melanoma(33;0.211)		Colorectal(1;0.000501)|READ - Rectum adenocarcinoma(2;0.00226)|BRCA - Breast invasive adenocarcinoma(31;0.246)		GTGTCCAGCGTGGCTGATTCG	0.572													26	32					0	0	1	0	0
NFATC1	4772	broad.mit.edu	37	18	77193719	77193719	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr18:77193719G>A	uc010xfg.1	+	3	1820	c.1367G>A	c.(1366-1368)GGA>GAA	p.G456E	NFATC1_uc002lnc.1_Missense_Mutation_p.G456E|NFATC1_uc010xff.1_Missense_Mutation_p.G456E|NFATC1_uc002lnd.2_Missense_Mutation_p.G456E|NFATC1_uc002lne.2_5'UTR|NFATC1_uc010xfh.1_Missense_Mutation_p.G456E|NFATC1_uc010xfi.1_Missense_Mutation_p.G443E|NFATC1_uc010xfj.1_5'UTR|NFATC1_uc002lnf.2_Missense_Mutation_p.G443E|NFATC1_uc002lng.2_Missense_Mutation_p.G443E|NFATC1_uc010xfk.1_Missense_Mutation_p.G443E	NM_006162	NP_006153	O95644	NFAC1_HUMAN	nuclear factor of activated T-cells, cytosolic	456	RHD.				intracellular signal transduction|positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|nucleus	FK506 binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			large_intestine(1)|ovary(1)	2		Esophageal squamous(42;0.0157)|Melanoma(33;0.144)		OV - Ovarian serous cystadenocarcinoma(15;3.73e-07)|BRCA - Breast invasive adenocarcinoma(31;0.0257)		GCGTCGGCCGGAGGACACCCC	0.617													33	41					0	0	1	0	0
PPAP2C	8612	broad.mit.edu	37	19	282248	282248	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:282248G>A	uc002loi.2	-	5	702	c.603C>T	c.(601-603)TTC>TTT	p.F201F	PPAP2C_uc002loh.2_Silent_p.F222F|PPAP2C_uc002loj.2_Silent_p.F145F	NM_003712	NP_003703	O43688	LPP2_HUMAN	phosphatidic acid phosphatase type 2C isoform 1	201	Helical; (Potential).				sphingolipid metabolic process	integral to membrane|plasma membrane	phosphatidate phosphatase activity|phosphoprotein phosphatase activity|sphingosine-1-phosphate phosphatase activity	p.A201T(1)		central_nervous_system(1)	1		all_cancers(10;1.13e-36)|all_epithelial(18;1.46e-23)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.1e-06)|all_lung(49;1.55e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CCACCAGGAAGAACTGGACTG	0.607													9	35					0	0	1	0	0
RNF126	55658	broad.mit.edu	37	19	651732	651732	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:651732G>A	uc010drs.2	-	4	428	c.322C>T	c.(322-324)CCT>TCT	p.P108S	RNF126_uc002lpi.2_5'UTR	NM_194460	NP_919442	Q9BV68	RN126_HUMAN	ring finger protein 126	108							protein binding|zinc ion binding				0		all_epithelial(18;2.78e-22)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;3.55e-06)|all_lung(49;5.41e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CGGCTCTCAGGGTCCCTGCCG	0.716													4	22					0	0	1	0	0
C19orf21	126353	broad.mit.edu	37	19	758448	758448	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:758448G>A	uc002lpo.2	+	2	1585	c.1502G>A	c.(1501-1503)TGG>TAG	p.W501*		NM_173481	NP_775752	Q8IVT2	CS021_HUMAN	hypothetical protein LOC126353	501										upper_aerodigestive_tract(1)	1		Acute lymphoblastic leukemia(61;4.36e-14)|all_hematologic(61;4.84e-09)|Lung NSC(49;0.000145)|all_lung(49;0.000236)|Breast(49;0.0014)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GTCGTGCGGTGGGAGTACTTC	0.657													32	25					0	0	1	0	0
POLR2E	5434	broad.mit.edu	37	19	1095392	1095392	+	Splice_Site	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:1095392G>A	uc002lre.3	-	1	1	c.-76_splice	c.e1-1		POLR2E_uc010xgf.1_Splice_Site	NM_002695	NP_002686	P19388	RPAB1_HUMAN	DNA directed RNA polymerase II polypeptide E						interspecies interaction between organisms|mRNA capping|nuclear mRNA splicing, via spliceosome|positive regulation of viral transcription|protein phosphorylation|termination of RNA polymerase III transcription|transcription elongation from RNA polymerase II promoter|transcription elongation from RNA polymerase III promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	DNA-directed RNA polymerase II, core complex	DNA binding|DNA-directed RNA polymerase activity				0		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.04e-05)|all_lung(49;1.53e-05)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CGCCGAATCCGAATCAGGCCC	0.716													6	23					0	0	1	0	0
ZNF555	148254	broad.mit.edu	37	19	2853297	2853297	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:2853297C>T	uc002lwo.2	+	4	1323	c.1234C>T	c.(1234-1236)CGA>TGA	p.R412*	ZNF555_uc002lwn.3_Nonsense_Mutation_p.R411*	NM_152791	NP_690004	Q8NEP9	ZN555_HUMAN	zinc finger protein 555	412	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CTCCTCCTTTCGAGGACACAT	0.468													20	10					0	0	1	0	0
NCLN	56926	broad.mit.edu	37	19	3193344	3193344	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:3193344C>T	uc002lxi.2	+	3	592	c.438C>T	c.(436-438)GCC>GCT	p.A146A	NCLN_uc002lxh.1_RNA	NM_020170	NP_064555	Q969V3	NCLN_HUMAN	nicalin precursor	146	Lumenal (Potential).				proteolysis|regulation of signal transduction	endoplasmic reticulum membrane|integral to membrane|nucleus	peptidase activity|protein binding				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.83e-113)|Epithelial(107;1.65e-111)|all cancers(105;1.53e-103)|BRCA - Breast invasive adenocarcinoma(158;0.00139)|STAD - Stomach adenocarcinoma(1328;0.18)		TGTACTTTGCCGTGGAGGACG	0.637													5	45					0	0	1	0	0
PIP5K1C	23396	broad.mit.edu	37	19	3639013	3639013	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:3639013C>T	uc002lyj.1	-	16	1846	c.1789G>A	c.(1789-1791)GTG>ATG	p.V597M	PIP5K1C_uc010xhq.1_Missense_Mutation_p.V597M|PIP5K1C_uc010xhr.1_Missense_Mutation_p.V597M	NM_012398	NP_036530	O60331	PI51C_HUMAN	phosphatidylinositol-4-phosphate 5-kinase, type	597					axon guidance	cytosol|plasma membrane	1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding			stomach(2)|skin(2)	4		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.95e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0026)|STAD - Stomach adenocarcinoma(1328;0.183)		GAAGCCTCCACCCTGGGGACA	0.667													39	25					0	0	1	0	0
SEMA6B	10501	broad.mit.edu	37	19	4558145	4558145	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:4558145G>A	uc010duc.1	-	2	176	c.138C>T	c.(136-138)CCC>CCT	p.P46P	SEMA6B_uc010dud.2_Silent_p.P46P|SEMA6B_uc010xih.1_Silent_p.P46P	NM_032108	NP_115484	Q9H3T3	SEM6B_HUMAN	semaphorin 6B precursor	46	Extracellular (Potential).|Sema.				cell differentiation|nervous system development	integral to membrane	receptor activity			skin(1)	1		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0149)|STAD - Stomach adenocarcinoma(1328;0.18)		CCACAAACACGGGATAGTGGT	0.637											OREG0025169	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	19	11					0	0	1	0	0
PTPRS	5802	broad.mit.edu	37	19	5215581	5215581	+	Silent	SNP	G	A	A	rs142108661		TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:5215581G>A	uc002mbv.2	-	27	4356	c.4122C>T	c.(4120-4122)CCC>CCT	p.P1374P	PTPRS_uc002mbu.1_Silent_p.P943P|PTPRS_uc010xin.1_Intron|PTPRS_uc002mbw.2_Silent_p.P1336P|PTPRS_uc002mbx.2_Silent_p.P931P|PTPRS_uc002mby.2_Silent_p.P927P	NM_002850	NP_002841	Q13332	PTPRS_HUMAN	protein tyrosine phosphatase, receptor type,	1374	Cytoplasmic (Potential).				cell adhesion	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			large_intestine(2)|ovary(1)|central_nervous_system(1)	4				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0321)|Lung(535;0.182)		TGTCTGCGATGGGAATTGGCG	0.677													11	72					0	0	1	0	0
MLLT1	4298	broad.mit.edu	37	19	6222317	6222317	+	Missense_Mutation	SNP	G	A	A	rs151080263		TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:6222317G>A	uc002mek.2	-	6	1089	c.925C>T	c.(925-927)CGG>TGG	p.R309W		NM_005934	NP_005925	Q03111	ENL_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	309					regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|nucleolus	DNA binding|protein binding			skin(1)	1						GGAGCACTCCGGGACCCCTTC	0.602			T	MLL	AL								6	29					0	0	1	0	0
INSR	3643	broad.mit.edu	37	19	7174710	7174710	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:7174710G>A	uc002mgd.1	-	4	1116	c.1007C>T	c.(1006-1008)CCC>CTC	p.P336L	INSR_uc002mge.1_Missense_Mutation_p.P336L|INSR_uc002mgf.2_Missense_Mutation_p.P336L	NM_000208	NP_000199	P06213	INSR_HUMAN	insulin receptor isoform Long precursor	336	Cys-rich.				activation of MAPK activity|activation of protein kinase B activity|carbohydrate metabolic process|fibroblast growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|glucose homeostasis|heart morphogenesis|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of cell proliferation|positive regulation of developmental growth|positive regulation of DNA replication|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of glycolysis|positive regulation of MAPKKK cascade|positive regulation of mitosis|positive regulation of nitric oxide biosynthetic process|positive regulation of protein kinase B signaling cascade|positive regulation of protein phosphorylation|positive regulation of respiratory burst|protein autophosphorylation|protein heterotetramerization|regulation of embryonic development|regulation of transcription, DNA-dependent|transformation of host cell by virus	caveola|endosome membrane|insulin receptor complex|microsome	ATP binding|GTP binding|insulin binding|insulin receptor activity|insulin receptor substrate binding|insulin-like growth factor I binding|insulin-like growth factor II binding|insulin-like growth factor receptor binding|metal ion binding|phosphatidylinositol 3-kinase binding|PTB domain binding|receptor signaling protein tyrosine kinase activity|SH2 domain binding			ovary(4)|lung(3)|central_nervous_system(2)|large_intestine(1)|stomach(1)|skin(1)	12					Insulin Glargine recombinant(DB00047)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	GCACACCTTGGGACAGGGACC	0.592													306	281					0	0	1	0	0
PRAM1	84106	broad.mit.edu	37	19	8562714	8562714	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:8562714C>T	uc002mkd.2	-	4	1530	c.1510G>A	c.(1510-1512)GAG>AAG	p.E504K	PRAM1_uc002mkc.2_Missense_Mutation_p.E503K	NM_032152	NP_115528	Q96QH2	PRAM_HUMAN	PML-RARA regulated adaptor molecule 1	552							lipid binding|protein binding				0						TCGTAGATCTCATCTGGGACC	0.403													16	76					0	0	1	0	0
OR2Z1	284383	broad.mit.edu	37	19	8841864	8841864	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:8841864C>T	uc010xkg.1	+	1	474	c.474C>T	c.(472-474)ATC>ATT	p.I158I		NM_001004699	NP_001004699	Q8NG97	OR2Z1_HUMAN	olfactory receptor, family 2, subfamily Z,	158	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2						ACGCCTCCATCCAGACCTCCA	0.552													93	47					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	8994476	8994476	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:8994476C>T	uc002mkp.2	-	64	41620	c.41416G>A	c.(41416-41418)GAG>AAG	p.E13806K	MUC16_uc010dwi.2_RNA|MUC16_uc010dwj.2_Missense_Mutation_p.E623K|MUC16_uc010xki.1_RNA	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	13808	Extracellular (Potential).|SEA 12.			Missing (in Ref. 3; AAK74120).	cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CACATGTTCTCCTCATACCGC	0.532													67	83					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9046026	9046026	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:9046026G>A	uc002mkp.2	-	5	35809	c.35605C>T	c.(35605-35607)CTT>TTT	p.L11869F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	11871	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGTAAACCAAGGGAAAGAGTT	0.502													25	146					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9046272	9046272	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:9046272G>A	uc002mkp.2	-	5	35563	c.35359C>T	c.(35359-35361)CCT>TCT	p.P11787S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	11789	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTTGAAGCAGGAAATGTTTTA	0.473													25	36					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9060378	9060378	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:9060378G>A	uc002mkp.2	-	3	27272	c.27068C>T	c.(27067-27069)CCT>CTT	p.P9023L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	9025	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGCCTTGTAAGGAACAGTGCT	0.527													10	62					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9060904	9060904	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:9060904C>T	uc002mkp.2	-	3	26746	c.26542G>A	c.(26542-26544)GAA>AAA	p.E8848K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	8850	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTAGTTTTTTCCACTGATGGG	0.512													88	49					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9061715	9061715	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:9061715G>A	uc002mkp.2	-	3	25935	c.25731C>T	c.(25729-25731)TCC>TCT	p.S8577S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	8579	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTGGTAATGTGGAGAAAAAAG	0.532													13	43					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9064221	9064221	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:9064221G>A	uc002mkp.2	-	3	23429	c.23225C>T	c.(23224-23226)TCA>TTA	p.S7742L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7744	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						ACTTGAAGATGAACTGGTTCC	0.527													29	151					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9075654	9075654	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:9075654C>T	uc002mkp.2	-	3	11996	c.11792G>A	c.(11791-11793)AGA>AAA	p.R3931K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	3932	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGGGGCAATTCTCTCATATGG	0.488													11	28					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9084930	9084930	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:9084930C>T	uc002mkp.2	-	1	7089	c.6885G>A	c.(6883-6885)TGG>TGA	p.W2295*		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	2295	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTGAACTCATCCAATCCCCAG	0.468													15	16					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9089082	9089082	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:9089082G>A	uc002mkp.2	-	1	2937	c.2733C>T	c.(2731-2733)TTC>TTT	p.F911F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	911	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGGATGAAGAGAACTGAGCTG	0.512													4	36					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9089737	9089737	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:9089737C>T	uc002mkp.2	-	1	2282	c.2078G>A	c.(2077-2079)GGA>GAA	p.G693E		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	693	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CAGGCTGGTTCCTTCCCTGAA	0.502													47	34					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9091597	9091597	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:9091597C>T	uc002mkp.2	-	1	422	c.218G>A	c.(217-219)GGA>GAA	p.G73E		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	73	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGTGGTTCTTCCCACAACCGA	0.517													24	85					0	0	1	0	0
OR7D2	162998	broad.mit.edu	37	19	9296779	9296779	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:9296779C>T	uc002mkz.1	+	1	510	c.322C>T	c.(322-324)CCT>TCT	p.P108S		NM_175883	NP_787079	Q96RA2	OR7D2_HUMAN	olfactory receptor, family 7, subfamily D,	108	Helical; Name=3; (Potential).				regulation of transcription, DNA-dependent|sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|upper_aerodigestive_tract(1)	3						CATGTTTTTTCCTATTCTGGA	0.512													34	140					0	0	1	0	0
OR7E24	26648	broad.mit.edu	37	19	9362659	9362659	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:9362659G>A	uc002mlb.1	+	1	940	c.940G>A	c.(940-942)GAC>AAC	p.D314N		NM_001079935	NP_001073404	Q6IFN5	O7E24_HUMAN	olfactory receptor, family 7, subfamily E,	314	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						GAGGAACAAGGACATTCAAAG	0.468													36	23					0	0	1	0	0
OLFM2	93145	broad.mit.edu	37	19	9965321	9965321	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:9965321C>T	uc002mmp.2	-	6	934	c.906G>A	c.(904-906)AGG>AGA	p.R302R	OLFM2_uc002mmo.2_Silent_p.R224R	NM_058164	NP_477512	O95897	NOE2_HUMAN	olfactomedin 2 precursor	302	Olfactomedin-like.					extracellular region				large_intestine(1)|skin(1)	2						CCGGGAGGCTCCTCTGCACCA	0.607													35	27					0	0	1	0	0
COL5A3	50509	broad.mit.edu	37	19	10089267	10089267	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:10089267C>T	uc002mmq.1	-	41	3087	c.3001G>A	c.(3001-3003)GGG>AGG	p.G1001R		NM_015719	NP_056534	P25940	CO5A3_HUMAN	collagen, type V, alpha 3 preproprotein	1001	Triple-helical region.				collagen fibril organization|skin development	collagen type V	collagen binding|extracellular matrix structural constituent			ovary(7)|lung(1)|central_nervous_system(1)|skin(1)	10			Epithelial(33;7.11e-05)			CCCACGGGCCCTGGGGGGCCC	0.542													19	16					0	0	1	0	0
RDH8	50700	broad.mit.edu	37	19	10127869	10127869	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:10127869C>T	uc002mmr.2	+	2	489	c.240C>T	c.(238-240)ATC>ATT	p.I80I		NM_015725	NP_056540	Q9NYR8	RDH8_HUMAN	retinol dehydrogenase 8 (all-trans)	80					estrogen biosynthetic process|response to stimulus|visual perception	cytoplasm|integral to plasma membrane	binding|estradiol 17-beta-dehydrogenase activity|NADP-retinol dehydrogenase activity|retinol dehydrogenase activity			ovary(3)|pancreas(1)	4			Epithelial(33;4.24e-05)		Vitamin A(DB00162)	TCAGCTGTATCCAGGGAGAAG	0.597													14	18					0	0	1	0	0
TYK2	7297	broad.mit.edu	37	19	10476393	10476393	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:10476393C>A	uc002moc.3	-	7	1189	c.811G>T	c.(811-813)GGC>TGC	p.G271C	TYK2_uc010dxe.2_Missense_Mutation_p.G86C|TYK2_uc002mod.2_Missense_Mutation_p.G271C	NM_003331	NP_003322	P29597	TYK2_HUMAN	tyrosine kinase 2	271	FERM.				intracellular protein kinase cascade|regulation of type I interferon-mediated signaling pathway|type I interferon-mediated signaling pathway	cytoskeleton|cytosol|membrane|nucleus	ATP binding|growth hormone receptor binding|non-membrane spanning protein tyrosine kinase activity			lung(5)|large_intestine(2)|ovary(1)|breast(1)	9			OV - Ovarian serous cystadenocarcinoma(20;1.77e-09)|Epithelial(33;3.92e-06)|all cancers(31;8.95e-06)			CGCTCTGTGCCGAAGCGGGGT	0.677													3	28					1	1	1	1	0
S1PR5	53637	broad.mit.edu	37	19	10625118	10625118	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:10625118G>A	uc002mot.1	-	2	627	c.570C>T	c.(568-570)GCC>GCT	p.A190A	S1PR5_uc002mou.1_Silent_p.A190A	NM_030760	NP_110387	Q9H228	S1PR5_HUMAN	endothelial differentiation, sphingolipid	190	Extracellular (By similarity).					integral to membrane|plasma membrane	lysosphingolipid and lysophosphatidic acid receptor activity			central_nervous_system(1)|pancreas(1)	2						CGTAGGCCTTGGCGTAGAGCG	0.672													9	7					0	0	1	0	0
HOOK2	29911	broad.mit.edu	37	19	12878872	12878872	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:12878872G>A	uc002muy.2	-	12	1341	c.1170C>T	c.(1168-1170)TGC>TGT	p.C390C	HOOK2_uc010xmq.1_5'Flank|HOOK2_uc002muz.2_Silent_p.C390C	NM_013312	NP_037444	Q96ED9	HOOK2_HUMAN	hook homolog 2 isoform 1	390	Sufficient for interaction with microtubules.|Potential.				early endosome to late endosome transport|endocytosis|endosome organization|endosome to lysosome transport|lysosome organization|microtubule cytoskeleton organization|protein transport	centrosome|FHF complex|microtubule	identical protein binding|microtubule binding			ovary(1)|breast(1)|skin(1)	3						CCAGGTTGCGGCATTCAAATA	0.577													38	167					0	0	1	0	0
RLN3	117579	broad.mit.edu	37	19	14139030	14139030	+	Missense_Mutation	SNP	T	G	G			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:14139030T>G	uc002mxw.1	+	1	14	c.14T>G	c.(13-15)ATG>AGG	p.M5R	RLN3_uc010dzj.1_Missense_Mutation_p.M5R	NM_080864	NP_543140	Q8WXF3	REL3_HUMAN	relaxin 3 preproprotein	5						extracellular region	hormone activity				0						GCCAGGTACATGCTGCTGCTG	0.642													19	40					0	0	1	0	0
CLEC17A	388512	broad.mit.edu	37	19	14710880	14710880	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:14710880C>T	uc010dzn.1	+	12	857	c.780C>T	c.(778-780)CCC>CCT	p.P260P	CLEC17A_uc002mzh.1_Silent_p.P243P|CLEC17A_uc010xnt.1_RNA|CLEC17A_uc010xnu.1_Intron|CLEC17A_uc010dzo.1_Silent_p.P260P			Q6ZS10	CL17A_HUMAN	SubName: Full=CLEC17A protein;	260	Extracellular (Potential).					cell surface|integral to membrane	fucose binding|mannose binding|metal ion binding|receptor activity				0						GCTGGCTGCCCTTTGAGGGCA	0.512													22	22					0	0	1	0	0
SLC1A6	6511	broad.mit.edu	37	19	15072871	15072871	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:15072871C>T	uc002naa.1	-	5	886	c.878G>A	c.(877-879)AGG>AAG	p.R293K	SLC1A6_uc010dzu.1_Missense_Mutation_p.R293K|SLC1A6_uc010xod.1_Missense_Mutation_p.R229K|SLC1A6_uc002nab.2_Missense_Mutation_p.R293K|SLC1A6_uc002nac.2_Missense_Mutation_p.R293K	NM_005071	NP_005062	P48664	EAA4_HUMAN	solute carrier family 1 (high affinity	293					synaptic transmission	integral to plasma membrane|membrane fraction	high-affinity glutamate transmembrane transporter activity|L-aspartate transmembrane transporter activity|sodium:dicarboxylate symporter activity			pancreas(3)|ovary(2)|skin(1)	6					L-Glutamic Acid(DB00142)	GAAGAAGTCCCTGAGGACTCT	0.582													13	90					0	0	1	0	0
SLC1A6	6511	broad.mit.edu	37	19	15072963	15072963	+	Silent	SNP	G	A	A	rs115350519	byFrequency	TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:15072963G>A	uc002naa.1	-	5	794	c.786C>T	c.(784-786)TCC>TCT	p.S262S	SLC1A6_uc010dzu.1_Silent_p.S262S|SLC1A6_uc010xod.1_Silent_p.S198S|SLC1A6_uc002nab.2_Silent_p.S262S|SLC1A6_uc002nac.2_Silent_p.S262S	NM_005071	NP_005062	P48664	EAA4_HUMAN	solute carrier family 1 (high affinity	262	Extracellular (Potential).				synaptic transmission	integral to plasma membrane|membrane fraction	high-affinity glutamate transmembrane transporter activity|L-aspartate transmembrane transporter activity|sodium:dicarboxylate symporter activity			pancreas(3)|ovary(2)|skin(1)	6					L-Glutamic Acid(DB00142)	TGCCATTGGCGGAGCCAGGCA	0.582													16	58					0	0	1	0	0
WIZ	58525	broad.mit.edu	37	19	15547739	15547739	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:15547739G>A	uc002nbb.3	-	3	621	c.407C>T	c.(406-408)CCC>CTC	p.P136L		NM_021241	NP_067064	O95785	WIZ_HUMAN	widely-interspaced zinc finger motifs	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment						nucleus	zinc ion binding				0						TCGGCCCAGGGGGCTGGGGGG	0.662													18	59					0	0	1	0	0
WIZ	58525	broad.mit.edu	37	19	15547879	15547879	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:15547879G>A	uc002nbb.3	-	3	481	c.267C>T	c.(265-267)TTC>TTT	p.F89F		NM_021241	NP_067064	O95785	WIZ_HUMAN	widely-interspaced zinc finger motifs	879	C2H2-type 7.					nucleus	zinc ion binding				0						CCCGTGTGTCGAAGCCAGCCC	0.632													4	26					0	0	1	0	0
PGLYRP2	114770	broad.mit.edu	37	19	15586707	15586707	+	Silent	SNP	A	G	G			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:15586707A>G	uc002nbf.3	-	2	907	c.774T>C	c.(772-774)TTT>TTC	p.F258F	PGLYRP2_uc002nbg.3_Silent_p.F258F	NM_052890	NP_443122	Q96PD5	PGRP2_HUMAN	peptidoglycan recognition protein 2 precursor	258					defense response to Gram-positive bacterium|detection of bacterium|innate immune response|peptide amidation|peptidoglycan catabolic process	extracellular region|intracellular|membrane	N-acetylmuramoyl-L-alanine amidase activity|peptidoglycan receptor activity|zinc ion binding			ovary(3)	3						CCAAAAGCGTAAAGGTCCGAG	0.607													37	25					0	0	1	0	0
CYP4F22	126410	broad.mit.edu	37	19	15651440	15651440	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:15651440G>A	uc002nbh.3	+	8	1018	c.851G>A	c.(850-852)CGG>CAG	p.R284Q		NM_173483	NP_775754	Q6NT55	CP4FN_HUMAN	cytochrome P450, family 4, subfamily F,	284						endoplasmic reticulum membrane|microsome	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen			ovary(1)|pancreas(1)	2						GAACGGCGGCGGGCACTGCGT	0.627													17	65					0	0	1	0	0
OR10H4	126541	broad.mit.edu	37	19	16060468	16060468	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:16060468C>T	uc010xov.1	+	1	651	c.651C>T	c.(649-651)ATC>ATT	p.I217I		NM_001004465	NP_001004465	Q8NGA5	O10H4_HUMAN	olfactory receptor, family 10, subfamily H,	217	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2						TCCTCATCATCCTCTCCTATG	0.502													38	168					0	0	1	0	0
HSH2D	84941	broad.mit.edu	37	19	16268549	16268549	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:16268549G>A	uc002ndp.3	+	9	1534	c.1003G>A	c.(1003-1005)GAC>AAC	p.D335N	HSH2D_uc002ndr.2_3'UTR|HSH2D_uc010ead.2_RNA	NM_032855	NP_116244	Q96JZ2	HSH2D_HUMAN	hematopoietic SH2 domain containing	335						cytoplasm|nucleus					0						GCCTGAGAACGACCAGCTCCC	0.632													10	12					0	0	1	0	0
NWD1	284434	broad.mit.edu	37	19	16860660	16860660	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:16860660C>T	uc002neu.3	+	6	1629	c.1207C>T	c.(1207-1209)CCT>TCT	p.P403S	NWD1_uc002net.3_Missense_Mutation_p.P268S|NWD1_uc002nev.3_Missense_Mutation_p.P197S			Q149M9	NWD1_HUMAN	RecName: Full=NACHT and WD repeat domain-containing protein 1;	403	NACHT.						ATP binding			skin(3)|ovary(2)|pancreas(2)	7						GCCCTTGCCCCCTGCCCAGGT	0.607													3	35					0	0	1	0	0
USHBP1	83878	broad.mit.edu	37	19	17367438	17367438	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:17367438G>A	uc002nfs.1	-	9	1425	c.1312C>T	c.(1312-1314)CTA>TTA	p.L438L	USHBP1_uc002nfr.1_Silent_p.L64L|USHBP1_uc002nft.1_RNA|USHBP1_uc010xpk.1_Silent_p.L374L	NM_031941	NP_114147	Q8N6Y0	USBP1_HUMAN	Usher syndrome 1C binding protein 1	438							PDZ domain binding			ovary(1)	1						ATCTTCATTAGAGAACGGCGC	0.597													24	68					0	0	1	0	0
ANKLE1	126549	broad.mit.edu	37	19	17397294	17397294	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:17397294C>T	uc002nga.2	+	9	2057	c.1781C>T	c.(1780-1782)GCC>GTC	p.A594V	ANKLE1_uc010xpm.1_RNA|ANKLE1_uc010eao.1_Missense_Mutation_p.A590V|ANKLE1_uc010xpn.1_Missense_Mutation_p.P576S|ANKLE1_uc002nfy.2_Missense_Mutation_p.A557V|ANKLE1_uc002nfz.2_Missense_Mutation_p.A300V	NM_152363	NP_689576	Q8NAG6	ANKL1_HUMAN	ankyrin repeat domain 41	594						nuclear envelope					0						CTGCACCGTGCCCTCCTTGTC	0.662													5	14					0	0	1	0	0
ZNF676	163223	broad.mit.edu	37	19	22364296	22364296	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:22364296C>T	uc002nqs.1	-	3	541	c.223G>A	c.(223-225)GGA>AGA	p.G75R		NM_001001411	NP_001001411	Q8N7Q3	ZN676_HUMAN	zinc finger protein 676	75					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.114)				TTCTCATGTCCACATTTGTCA	0.328													14	47					0	0	1	0	0
ZNF99	7652	broad.mit.edu	37	19	22939845	22939845	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:22939845G>A	uc010xrh.1	-	6	2486	c.2486C>T	c.(2485-2487)TCG>TTG	p.S829L		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				ACATTTGTACGATTTCTCCCT	0.373													30	54					0	0	1	0	0
ZNF99	7652	broad.mit.edu	37	19	22941277	22941277	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:22941277C>T	uc010xrh.1	-	5	1161	c.1161G>A	c.(1159-1161)GAG>GAA	p.E387E		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				TGTAGGGTTTCTCTCCAGTAT	0.353													13	11					0	0	1	0	0
ZNF99	7652	broad.mit.edu	37	19	22942275	22942275	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:22942275G>A	uc010xrh.1	-	4	499	c.499C>T	c.(499-501)CAG>TAG	p.Q167*		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				TTGTTACACTGAAATATTTTT	0.284													13	43					0	0	1	0	0
ZNF99	7652	broad.mit.edu	37	19	22942280	22942280	+	Missense_Mutation	SNP	A	C	C			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:22942280A>C	uc010xrh.1	-	4	494	c.494T>G	c.(493-495)ATA>AGA	p.I165R		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				ACACTGAAATATTTTTCCCTG	0.284													14	44					0	0	1	0	0
KIAA0355	9710	broad.mit.edu	37	19	34833032	34833032	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:34833032C>T	uc002nvd.3	+	10	3052	c.2193C>T	c.(2191-2193)GTC>GTT	p.V731V		NM_014686	NP_055501	O15063	K0355_HUMAN	hypothetical protein LOC9710	731										ovary(1)	1	Esophageal squamous(110;0.162)					AACCTCAAGTCCAATACTACC	0.642													35	107					0	0	1	0	0
HPN	3249	broad.mit.edu	37	19	35551587	35551587	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:35551587C>T	uc002nxq.1	+	10	922	c.677C>T	c.(676-678)TCT>TTT	p.S226F	HPN_uc002nxr.1_Missense_Mutation_p.S226F|HPN_uc002nxs.1_Missense_Mutation_p.S68F|HPN_uc010xsh.1_Missense_Mutation_p.S195F|HPN_uc002nxt.1_Missense_Mutation_p.S110F|LOC100128675_uc010xsi.1_Intron	NM_002151	NP_002142	P05981	HEPS_HUMAN	hepsin	226	Extracellular (Potential).|Peptidase S1.				cell growth|proteolysis	cytoplasm|integral to plasma membrane	scavenger receptor activity|serine-type endopeptidase activity			ovary(1)|central_nervous_system(1)	2	all_lung(56;5.38e-08)|Lung NSC(56;8.61e-08)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0849)		Coagulation factor VIIa(DB00036)	GCCCAGGCCTCTCCCCACGGT	0.657													21	59					0	0	1	0	0
FFAR2	2867	broad.mit.edu	37	19	35941362	35941362	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:35941362G>A	uc002nzg.2	+	2	826	c.746G>A	c.(745-747)AGA>AAA	p.R249K	FFAR2_uc010eea.2_Missense_Mutation_p.R249K	NM_005306	NP_005297	O15552	FFAR2_HUMAN	free fatty acid receptor 2	249	Extracellular (Potential).					integral to plasma membrane	G-protein coupled receptor activity|lipid binding			central_nervous_system(1)	1	all_lung(56;1.89e-08)|Lung NSC(56;2.9e-08)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0724)			TATCACCAGAGAAAAAGCCCC	0.592													18	69					0	0	1	0	0
HAUS5	23354	broad.mit.edu	37	19	36110967	36110968	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:36110967_36110968CC>TT	uc002oam.1	+	16	1511_1512	c.1460_1461CC>TT	c.(1459-1461)TCC>TTT	p.S487F		NM_015302	NP_056117	O94927	HAUS5_HUMAN	HAUS augmin-like complex, subunit 5	487					cell division|centrosome organization|mitosis|spindle assembly	centrosome|HAUS complex|microtubule|spindle					0						CACCCCGCGTCCCCAAGGGGCT	0.678													27	113					0	0	1	0	0
KCNK6	9424	broad.mit.edu	37	19	38817347	38817347	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:38817347C>T	uc002oic.2	+	2	547	c.437C>T	c.(436-438)TCA>TTA	p.S146L	KCNK6_uc002oid.2_Missense_Mutation_p.S12L	NM_004823	NP_004814	Q9Y257	KCNK6_HUMAN	potassium channel, subfamily K, member 6	146	Cytoplasmic (Potential).					voltage-gated potassium channel complex	inward rectifier potassium channel activity			ovary(1)	1	all_cancers(60;5.83e-07)		Lung(45;0.00047)|LUSC - Lung squamous cell carcinoma(53;0.000613)		Ibutilide(DB00308)|Quinidine(DB00908)	CAGCGCCTGTCACTGCTGCTG	0.687													14	57					0	0	1	0	0
RYR1	6261	broad.mit.edu	37	19	38969230	38969230	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:38969230C>T	uc002oit.2	+	31	4740	c.4610C>T	c.(4609-4611)ACC>ATC	p.T1537I	RYR1_uc002oiu.2_Missense_Mutation_p.T1537I	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	1537	Cytoplasmic.|B30.2/SPRY 3.|6 X approximate repeats.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	GAGAGCAACACCTTTTTCCAG	0.552													9	42					0	0	1	0	0
PAK4	10298	broad.mit.edu	37	19	39668371	39668371	+	Silent	SNP	C	T	T	rs146955542	by1000genomes	TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:39668371C>T	uc002okj.1	+	10	2003	c.1542C>T	c.(1540-1542)CCC>CCT	p.P514P	PAK4_uc002okl.1_Silent_p.P514P|PAK4_uc002okn.1_Silent_p.P514P|PAK4_uc002okm.1_Silent_p.P361P|PAK4_uc002oko.1_Silent_p.P361P|PAK4_uc002okp.1_Silent_p.P424P	NM_001014831	NP_001014831	O96013	PAK4_HUMAN	p21-activated kinase 4 isoform 1	514	Protein kinase.				cellular component movement|signal transduction	Golgi apparatus	ATP binding|protein binding|protein serine/threonine kinase activity			lung(3)|ovary(1)	4	all_cancers(60;1.03e-07)|all_epithelial(25;9.66e-08)|all_lung(34;1.58e-07)|Lung NSC(34;1.88e-07)|Ovarian(47;0.0454)		Epithelial(26;4.82e-25)|all cancers(26;2.94e-22)|Lung(45;0.000797)|LUSC - Lung squamous cell carcinoma(53;0.00113)			GAGAGCCCCCCTACTTCAACG	0.602													15	17					0	0	1	0	0
PLEKHG2	64857	broad.mit.edu	37	19	39914776	39914776	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:39914776C>T	uc010xuz.1	+	19	3328	c.3003C>T	c.(3001-3003)TCC>TCT	p.S1001S	PLEKHG2_uc010xuy.1_Silent_p.S942S|PLEKHG2_uc002olj.2_Intron|PLEKHG2_uc010xva.1_Silent_p.S779S	NM_022835	NP_073746	Q9H7P9	PKHG2_HUMAN	common-site lymphoma/leukemia guanine nucleotide	1001					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity			skin(2)|pancreas(1)|breast(1)	4	all_cancers(60;3.08e-07)|all_lung(34;2.66e-08)|Lung NSC(34;3e-08)|all_epithelial(25;6.57e-07)|Ovarian(47;0.0569)		Epithelial(26;2.92e-26)|all cancers(26;2.01e-23)|Lung(45;0.000499)|LUSC - Lung squamous cell carcinoma(53;0.000657)			CAGCTCCATCCACCGCCTTTT	0.502													54	81					0	0	1	0	0
CLC	1178	broad.mit.edu	37	19	40222069	40222069	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:40222069C>T	uc002omh.2	-	4	456	c.380G>A	c.(379-381)TGG>TAG	p.W127*		NM_001828	NP_001819	Q05315	LPPL_HUMAN	Charcot-Leyden crystal protein	127	Galectin.				lipid catabolic process|multicellular organismal development		carboxylesterase activity|lysophospholipase activity|sugar binding				0	all_cancers(60;2.99e-06)|all_lung(34;4.7e-08)|Lung NSC(34;5.46e-08)|Ovarian(47;0.06)	Renal(1328;0.000147)|Hepatocellular(1079;0.0202)|Myeloproliferative disorder(2;0.0255)	Epithelial(26;6.43e-25)|OV - Ovarian serous cystadenocarcinoma(5;1.07e-24)|all cancers(26;8.38e-23)	GBM - Glioblastoma multiforme(1328;4.97e-06)|STAD - Stomach adenocarcinoma(1328;0.00655)		GATATCTCTCCACACTTGCAC	0.418													83	107					0	0	1	0	0
FCGBP	8857	broad.mit.edu	37	19	40363045	40363045	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:40363045C>T	uc002omp.3	-	32	15033	c.15025G>A	c.(15025-15027)GAG>AAG	p.E5009K		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	5009	VWFD 12.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			CCGAAGGTCTCCACACTGGAC	0.662													5	16					0	0	1	0	0
FCGBP	8857	broad.mit.edu	37	19	40395962	40395962	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:40395962G>A	uc002omp.3	-	15	7443	c.7435C>T	c.(7435-7437)CTG>TTG	p.L2479L		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	2479	VWFD 6.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			GTCTGAGCCAGCACATACACG	0.647													34	61					0	0	1	0	0
AXL	558	broad.mit.edu	37	19	41765576	41765576	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:41765576G>A	uc010ehj.2	+	20	2642	c.2452G>A	c.(2452-2454)GAA>AAA	p.E818K	CYP2F1_uc010xvw.1_Intron|HNRNPUL1_uc002opz.3_5'Flank|HNRNPUL1_uc002oqa.3_5'Flank|AXL_uc010ehk.2_Missense_Mutation_p.E809K|HNRNPUL1_uc010ehl.1_5'Flank	NM_021913	NP_068713	P30530	UFO_HUMAN	AXL receptor tyrosine kinase isoform 1	818	Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(4)|stomach(3)|ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)	13						GGAGCCTGACGAAATCCTCTA	0.572													9	55					0	0	1	0	0
HNRNPUL1	11100	broad.mit.edu	37	19	41785031	41785031	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:41785031C>T	uc002oqb.3	+	6	1125	c.836C>T	c.(835-837)CCC>CTC	p.P279L	CYP2F1_uc010xvw.1_Intron|HNRNPUL1_uc002opz.3_Missense_Mutation_p.P179L|HNRNPUL1_uc002oqa.3_Missense_Mutation_p.P179L|HNRNPUL1_uc010ehm.2_Missense_Mutation_p.P279L|HNRNPUL1_uc002oqc.3_Intron|HNRNPUL1_uc002oqe.3_Intron|HNRNPUL1_uc002oqd.3_Missense_Mutation_p.P179L|HNRNPUL1_uc010ehn.2_Missense_Mutation_p.P179L|HNRNPUL1_uc010eho.2_Missense_Mutation_p.P179L|HNRNPUL1_uc010xvy.1_Missense_Mutation_p.P179L|HNRNPUL1_uc010ehp.2_Missense_Mutation_p.P135L|HNRNPUL1_uc010ehl.1_Missense_Mutation_p.P179L	NM_007040	NP_008971	Q9BUJ2	HNRL1_HUMAN	heterogeneous nuclear ribonucleoprotein U-like 1	279	B30.2/SPRY.|Necessary for interaction with TP53.				nuclear mRNA splicing, via spliceosome|regulation of transcription, DNA-dependent|response to virus|transcription, DNA-dependent	heterogeneous nuclear ribonucleoprotein complex|nucleoplasm	enzyme binding|RNA binding			central_nervous_system(1)|skin(1)	2						GAGCCTGACCCCCACGTGGTC	0.567													39	65					0	0	1	0	0
DEDD2	162989	broad.mit.edu	37	19	42703977	42703977	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:42703977G>A	uc002osu.1	-	5	662	c.594C>T	c.(592-594)ATC>ATT	p.I198I	DEDD2_uc002osv.1_RNA|DEDD2_uc002osw.1_Silent_p.I193I|DEDD2_uc002osx.1_3'UTR|DEDD2_uc002osy.1_Silent_p.I198I	NM_133328	NP_579874	Q8WXF8	DEDD2_HUMAN	death effector domain-containing  DNA binding	198					activation of pro-apoptotic gene products|apoptotic nuclear change|cellular homeostasis|induction of apoptosis via death domain receptors|intracellular signal transduction|negative regulation of transcription, DNA-dependent|RNA processing|rRNA catabolic process|transcription, DNA-dependent	nucleolus	DNA binding|receptor signaling complex scaffold activity				0		Prostate(69;0.0704)				CCCGGAGCCGGATGTCTGCAG	0.562													3	8					0	0	1	0	0
MEGF8	1954	broad.mit.edu	37	19	42863023	42863023	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:42863023G>A	uc002otl.3	+	29	5694	c.5059G>A	c.(5059-5061)GAA>AAA	p.E1687K	MEGF8_uc002otm.3_Missense_Mutation_p.E1295K	NM_001410	NP_001401	Q7Z7M0	MEGF8_HUMAN	multiple EGF-like-domains 8	1754	Extracellular (Potential).					integral to membrane	calcium ion binding|structural molecule activity			ovary(1)	1		Prostate(69;0.00682)				GGGGTTCCGGGAAGTCAGGAA	0.577													4	22					0	0	1	0	0
CNFN	84518	broad.mit.edu	37	19	42891524	42891524	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:42891524G>A	uc002otp.3	-	3	272	c.217C>T	c.(217-219)CGC>TGC	p.R73C	CNFN_uc002otq.3_Missense_Mutation_p.R86C	NM_032488	NP_115877	Q9BYD5	CNFN_HUMAN	cornifelin	73					keratinization	cornified envelope|cytoplasm					0		Prostate(69;0.00899)				ATGCCGGTGCGGATGGAGTGC	0.716													6	2					0	0	1	0	0
PSG11	5680	broad.mit.edu	37	19	43523042	43523042	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:43523042C>T	uc002ovm.1	-	3	696	c.589G>A	c.(589-591)GAA>AAA	p.E197K	PSG11_uc002ouw.2_Missense_Mutation_p.E203K|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Intron|PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG11_uc002ovk.1_Missense_Mutation_p.E203K|PSG11_uc002ovn.1_Missense_Mutation_p.E203K|PSG11_uc002ovo.1_Missense_Mutation_p.E75K|PSG11_uc002ovp.1_Missense_Mutation_p.E75K	NM_002785	NP_002776	Q9UQ72	PSG11_HUMAN	pregnancy specific beta-1-glycoprotein 11	197	Ig-like C2-type 1.				female pregnancy	extracellular region					0		Prostate(69;0.00682)				CTGTTGGTTTCAGACAGCTGC	0.498													149	60					0	0	1	0	0
PSG9	5678	broad.mit.edu	37	19	43763157	43763157	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:43763157G>A	uc002owd.3	-	4	939	c.840C>T	c.(838-840)CTC>CTT	p.L280L	PSG9_uc002owe.3_Intron|PSG9_uc010xwm.1_Silent_p.L187L|PSG9_uc002owf.3_Intron|PSG9_uc002owg.2_Intron|PSG9_uc002owh.2_Intron	NM_002784	NP_002775	Q00887	PSG9_HUMAN	pregnancy specific beta-1-glycoprotein 9	280	Ig-like C2-type 2.				female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00682)				GACTGACGGGGAGGCTCTGAC	0.478													67	234					0	0	1	0	0
TEX101	83639	broad.mit.edu	37	19	43920619	43920619	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:43920619C>T	uc010xwo.1	+	4	498	c.303C>T	c.(301-303)ATC>ATT	p.I101I	TEX101_uc002owk.2_Silent_p.I119I	NM_001130011	NP_001123483	Q9BY14	TX101_HUMAN	testis expressed 101 isoform 2	101						anchored to membrane|plasma membrane				ovary(1)	1		Prostate(69;0.0199)				CCGGCCTGATCGTGACCTCCT	0.527													79	96					0	0	1	0	0
ZNF233	353355	broad.mit.edu	37	19	44777860	44777860	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:44777860G>A	uc002oyz.1	+	5	1174	c.1047G>A	c.(1045-1047)CGG>CGA	p.R349R	ZNF235_uc002oyx.1_Intron|ZNF235_uc010eji.2_Intron|ZNF233_uc002oyy.1_Silent_p.R164R	NM_181756	NP_861421	A6NK53	ZN233_HUMAN	zinc finger protein 233	349	C2H2-type 3; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)	2		Prostate(69;0.0435)|all_neural(266;0.226)				TATATGCCCGGAGCTCCAACC	0.527													8	33					0	0	1	0	0
ZFP112	7771	broad.mit.edu	37	19	44832673	44832673	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:44832673G>A	uc010ejj.2	-	5	1768	c.1655C>T	c.(1654-1656)CCT>CTT	p.P552L	ZFP112_uc002ozc.3_Missense_Mutation_p.P546L|ZFP112_uc010xwy.1_Missense_Mutation_p.P569L|ZFP112_uc010xwz.1_Missense_Mutation_p.P551L	NM_001083335	NP_001076804	Q9UJU3	ZF112_HUMAN	zinc finger protein 228 isoform 1	552					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(2)	5						GCATTTATAAGGTTTCTCTCC	0.413													15	83					0	0	1	0	0
ZFP112	7771	broad.mit.edu	37	19	44833912	44833912	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:44833912G>A	uc010ejj.2	-	5	529	c.416C>T	c.(415-417)TCC>TTC	p.S139F	ZFP112_uc002ozc.3_Missense_Mutation_p.S133F|ZFP112_uc010xwy.1_Missense_Mutation_p.S156F|ZFP112_uc010xwz.1_Missense_Mutation_p.S138F	NM_001083335	NP_001076804	Q9UJU3	ZF112_HUMAN	zinc finger protein 228 isoform 1	139					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(2)	5						CTGGCCGAGGGAATTACCTTG	0.403													6	44					0	0	1	0	0
CLPTM1	1209	broad.mit.edu	37	19	45490630	45490630	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:45490630C>T	uc002pai.2	+	8	1002	c.987C>T	c.(985-987)TTC>TTT	p.F329F	CLPTM1_uc010ejv.1_Silent_p.F227F|CLPTM1_uc010xxf.1_Silent_p.F227F|CLPTM1_uc010xxg.1_Silent_p.F315F	NM_001294	NP_001285	O96005	CLPT1_HUMAN	cleft lip and palate associated transmembrane	329	Extracellular (Potential).				cell differentiation|multicellular organismal development|regulation of T cell differentiation in thymus	external side of plasma membrane|integral to plasma membrane				ovary(1)	1		all_neural(266;0.224)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.00354)|Epithelial(262;0.187)		CCTGGAACTTCCTGGGTGATG	0.647													42	140					0	0	1	0	0
MARK4	57787	broad.mit.edu	37	19	45805651	45805651	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:45805651C>T	uc002pbb.1	+	17	1947	c.1942C>T	c.(1942-1944)CAA>TAA	p.Q648*	MARK4_uc002pba.1_Silent_p.I674I			Q96L34	MARK4_HUMAN	RecName: Full=MAP/microtubule affinity-regulating kinase 4;          EC=2.7.11.1; AltName: Full=MAP/microtubule affinity-regulating kinase-like 1;	648					microtubule bundle formation|nervous system development|positive regulation of programmed cell death	centrosome|neuron projection	ATP binding|gamma-tubulin binding|microtubule binding|protein serine/threonine kinase activity|tau-protein kinase activity|ubiquitin binding			central_nervous_system(2)|large_intestine(1)	3		all_neural(266;0.224)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.0102)		ACCTTGGGATCAAACGGAAAC	0.612													113	138					0	0	1	0	0
PNMAL1	55228	broad.mit.edu	37	19	46973182	46973182	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:46973182G>A	uc002peq.3	-	2	1417	c.1111C>T	c.(1111-1113)CCT>TCT	p.P371S	PNMAL1_uc002per.3_Intron	NM_018215	NP_060685	Q86V59	PNML1_HUMAN	PNMA-like 1 isoform a	371											0		Ovarian(192;0.00965)|all_neural(266;0.0459)		OV - Ovarian serous cystadenocarcinoma(262;0.000166)|all cancers(93;0.0014)|GBM - Glioblastoma multiforme(486;0.0421)|Epithelial(262;0.0427)		TAGGAGACAGGGCCCAAGCTC	0.562													28	127					0	0	1	0	0
GRLF1	2909	broad.mit.edu	37	19	47423091	47423091	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:47423091C>T	uc010ekv.2	+	1	1159	c.1159C>T	c.(1159-1161)CCA>TCA	p.P387S		NM_004491	NP_004482	Q9NRY4	RHG35_HUMAN	glucocorticoid receptor DNA binding factor 1	387	FF 2.				axon guidance|negative regulation of transcription, DNA-dependent|small GTPase mediated signal transduction|transcription, DNA-dependent	cytosol	DNA binding|Rho GTPase activator activity|transcription corepressor activity			central_nervous_system(1)	1		all_cancers(25;1.51e-09)|all_epithelial(76;1.87e-07)|all_lung(116;7.86e-06)|Lung NSC(112;2.31e-05)|Ovarian(192;0.0129)|all_neural(266;0.026)|Breast(70;0.077)		all cancers(93;2.03e-05)|OV - Ovarian serous cystadenocarcinoma(262;2.57e-05)|Epithelial(262;0.00135)|GBM - Glioblastoma multiforme(486;0.0289)		TGAAGAGACCCCATGGGATGC	0.443													20	80					0	0	1	0	0
GRLF1	2909	broad.mit.edu	37	19	47492896	47492896	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:47492896C>T	uc010ekv.2	+	4	4000	c.4000C>T	c.(4000-4002)CCG>TCG	p.P1334S		NM_004491	NP_004482	Q9NRY4	RHG35_HUMAN	glucocorticoid receptor DNA binding factor 1	1334	Rho-GAP.				axon guidance|negative regulation of transcription, DNA-dependent|small GTPase mediated signal transduction|transcription, DNA-dependent	cytosol	DNA binding|Rho GTPase activator activity|transcription corepressor activity			central_nervous_system(1)	1		all_cancers(25;1.51e-09)|all_epithelial(76;1.87e-07)|all_lung(116;7.86e-06)|Lung NSC(112;2.31e-05)|Ovarian(192;0.0129)|all_neural(266;0.026)|Breast(70;0.077)		all cancers(93;2.03e-05)|OV - Ovarian serous cystadenocarcinoma(262;2.57e-05)|Epithelial(262;0.00135)|GBM - Glioblastoma multiforme(486;0.0289)		CCCCCTGGTCCCGTATAACAT	0.537													41	103					0	0	1	0	0
SLC8A2	6543	broad.mit.edu	37	19	47969297	47969297	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:47969297G>A	uc002pgx.2	-	2	642	c.364C>T	c.(364-366)CGC>TGC	p.R122C	SLC8A2_uc010xyq.1_Intron|SLC8A2_uc010xyr.1_Intron|SLC8A2_uc010ele.2_Missense_Mutation_p.R122C	NM_015063	NP_055878	Q9UPR5	NAC2_HUMAN	solute carrier family 8 member 2 precursor	122	Cytoplasmic (Potential).				cell communication|platelet activation	integral to membrane|plasma membrane	calcium:sodium antiporter activity|calmodulin binding			skin(3)|ovary(1)	4		all_cancers(25;3.05e-07)|all_lung(116;4.19e-06)|Lung NSC(112;7.16e-06)|all_epithelial(76;7.65e-06)|all_neural(266;0.0652)|Ovarian(192;0.086)|Breast(70;0.173)		OV - Ovarian serous cystadenocarcinoma(262;0.000501)|all cancers(93;0.00058)|Epithelial(262;0.0181)|GBM - Glioblastoma multiforme(486;0.0457)		TTCCAGATGCGAACGGTGCCC	0.587													4	23					0	0	1	0	0
ELSPBP1	64100	broad.mit.edu	37	19	48519292	48519292	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:48519292G>A	uc002pht.2	+	4	506	c.351G>A	c.(349-351)ACG>ACA	p.T117T		NM_022142	NP_071425	Q96BH3	ESPB1_HUMAN	epididymal sperm binding protein 1 precursor	117	Fibronectin type-II 2.				single fertilization	extracellular region					0		all_cancers(25;8.7e-09)|all_lung(116;1.15e-06)|all_epithelial(76;1.17e-06)|Lung NSC(112;2.56e-06)|all_neural(266;0.0138)|Ovarian(192;0.0261)|Breast(70;0.203)		OV - Ovarian serous cystadenocarcinoma(262;0.000253)|all cancers(93;0.00129)|Epithelial(262;0.0314)|GBM - Glioblastoma multiforme(486;0.0606)		TCTGTGAAACGAATGGTGAGC	0.552													20	97					0	0	1	0	0
CABP5	56344	broad.mit.edu	37	19	48537570	48537570	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:48537570G>A	uc002phu.1	-	5	523	c.398C>T	c.(397-399)GCC>GTC	p.A133V		NM_019855	NP_062829	Q9NP86	CABP5_HUMAN	calcium binding protein 5	133	EF-hand 3.				signal transduction	cytoplasm	calcium ion binding			skin(1)	1		all_cancers(25;1.86e-08)|all_lung(116;1.14e-06)|all_epithelial(76;1.16e-06)|Lung NSC(112;2.54e-06)|all_neural(266;0.0138)|Ovarian(192;0.0261)|Breast(70;0.203)		OV - Ovarian serous cystadenocarcinoma(262;4.09e-05)|all cancers(93;0.000322)|Epithelial(262;0.01)|GBM - Glioblastoma multiforme(486;0.058)		TCTCTGCATGGCCTGCTGTAG	0.517													8	30					0	0	1	0	0
LMTK3	114783	broad.mit.edu	37	19	49013363	49013363	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:49013363G>A	uc002pjk.2	-	4	365	c.365C>T	c.(364-366)TCC>TTC	p.S122F		NM_001080434	NP_001073903			lemur tyrosine kinase 3											lung(5)|central_nervous_system(1)	6		all_lung(116;0.000147)|Lung NSC(112;0.000251)|all_epithelial(76;0.000326)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000114)|all cancers(93;0.000141)|Epithelial(262;0.00854)|GBM - Glioblastoma multiforme(486;0.0231)		CGACTGTGAGGAGGAGGTCTC	0.627													9	20					0	0	1	0	0
CA11	770	broad.mit.edu	37	19	49142237	49142237	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:49142237G>A	uc002pjz.1	-	8	1431	c.869C>T	c.(868-870)CCC>CTC	p.P290L	SEC1_uc010xzv.1_Intron|SEC1_uc002pka.2_Intron|SEC1_uc010xzw.1_Intron|SEC1_uc010ema.2_Intron|DBP_uc002pjx.3_5'Flank|DBP_uc002pjy.2_5'Flank|DBP_uc010elz.1_5'Flank	NM_001217	NP_001208	O75493	CAH11_HUMAN	carbonic anhydrase XI precursor	290						extracellular region					0		all_epithelial(76;2.38e-06)|all_lung(116;4.89e-06)|Lung NSC(112;9.34e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000103)|all cancers(93;0.000119)|GBM - Glioblastoma multiforme(486;0.00634)|Epithelial(262;0.016)		GGGCTGCAGGGGCCGGCTGTT	0.647													11	22					0	0	1	0	0
SLC6A16	28968	broad.mit.edu	37	19	49793485	49793485	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:49793485G>A	uc002pmz.2	-	12	2340	c.2106C>T	c.(2104-2106)TCC>TCT	p.S702S	SLC6A16_uc002pna.2_3'UTR	NM_014037	NP_054756	Q9GZN6	S6A16_HUMAN	solute carrier family 6, member 16	702	Cytoplasmic (Potential).					integral to membrane|intracellular	neurotransmitter:sodium symporter activity			skin(2)|ovary(1)|kidney(1)	4		all_lung(116;1.7e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0392)		OV - Ovarian serous cystadenocarcinoma(262;0.00099)|GBM - Glioblastoma multiforme(486;0.0336)		TTAGGGGTAGGGATGTGGAGG	0.468													59	100					0	0	1	0	0
CD37	951	broad.mit.edu	37	19	49841245	49841245	+	Nonsense_Mutation	SNP	G	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:49841245G>T	uc002pnd.2	+	5	527	c.406G>T	c.(406-408)GAG>TAG	p.E136*	uc002pnb.1_Intron|CD37_uc002pnc.2_RNA|CD37_uc010yam.1_Nonsense_Mutation_p.E136*|CD37_uc010yan.1_Nonsense_Mutation_p.E68*|CD37_uc002pnf.3_Nonsense_Mutation_p.E108*|CD37_uc002pne.2_Nonsense_Mutation_p.E68*	NM_001774	NP_001765	P11049	CD37_HUMAN	CD37 antigen isoform A	136	Extracellular (Potential).					integral to membrane					0		all_lung(116;2.81e-06)|Lung NSC(112;5.89e-06)|all_neural(266;0.0189)|Ovarian(192;0.0392)		OV - Ovarian serous cystadenocarcinoma(262;0.00088)|GBM - Glioblastoma multiforme(486;0.0443)		CAACCCCGAGGAGACCGCGGC	0.627													4	40					0.000602214	0.000604935	1	1	0
DKKL1	27120	broad.mit.edu	37	19	49878086	49878087	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:49878086_49878087GG>AA	uc002pnk.2	+	5	744_745	c.530_531GG>AA	c.(529-531)CGG>CAA	p.R177Q		NM_014419	NP_055234	Q9UK85	DKKL1_HUMAN	dickkopf-like 1 precursor	177					anatomical structure morphogenesis	extracellular space	protein binding|signal transducer activity				0		all_lung(116;1.66e-06)|Lung NSC(112;5.89e-06)|all_neural(266;0.0189)|Ovarian(192;0.0392)		OV - Ovarian serous cystadenocarcinoma(262;0.00156)|GBM - Glioblastoma multiforme(486;0.0456)		CTGCCACGGCGGAGGTCCCACC	0.653													6	20					0	0	1	0	0
SCAF1	58506	broad.mit.edu	37	19	50154705	50154705	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:50154705C>T	uc002poq.2	+	7	1183	c.1059C>T	c.(1057-1059)TTC>TTT	p.F353F		NM_021228	NP_067051	Q9H7N4	SFR19_HUMAN	SR-related CTD-associated factor 1	353					mRNA processing|RNA splicing	nucleus	RNA binding				0		all_lung(116;1.05e-05)|Lung NSC(112;3.77e-05)|all_neural(266;0.196)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.00113)|GBM - Glioblastoma multiforme(134;0.0204)		GGCGGGTCTTCGTGGTGGGGA	0.751													3	5					0	0	1	0	0
ATF5	22809	broad.mit.edu	37	19	50436267	50436267	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:50436267C>T	uc010enq.1	+	4	1334	c.767C>T	c.(766-768)TCC>TTC	p.S256F	ATF5_uc002prd.2_Missense_Mutation_p.S256F	NM_012068	NP_036200	Q9Y2D1	ATF5_HUMAN	activating transcription factor 5	256					regulation of transcription from RNA polymerase II promoter	cytoplasm	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			skin(2)	2		all_lung(116;0.00318)|all_neural(266;0.107)|Ovarian(192;0.17)		GBM - Glioblastoma multiforme(134;0.00221)|OV - Ovarian serous cystadenocarcinoma(262;0.017)		CGGGCAGAGTCCGTGGAGCGC	0.657													8	22					0	0	1	0	0
SIGLEC14	100049587	broad.mit.edu	37	19	52147238	52147238	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:52147238G>A	uc002pxf.3	-	5	926	c.806C>T	c.(805-807)TCC>TTC	p.S269F		NM_001098612	NP_001092082	Q08ET2	SIG14_HUMAN	sialic acid binding Ig-like lectin 14 precursor	269	Extracellular (Potential).|Ig-like C2-type 2.				cell adhesion	integral to membrane|plasma membrane	protein binding|sugar binding			ovary(1)	1		all_neural(266;0.0299)		GBM - Glioblastoma multiforme(134;0.000965)|OV - Ovarian serous cystadenocarcinoma(262;0.0195)		GAGGAACAGGGACTGGCCCTC	0.612													11	26					0	0	1	0	0
SIGLEC14	100049587	broad.mit.edu	37	19	52149080	52149080	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:52149080C>T	uc002pxf.3	-	3	775	c.655G>A	c.(655-657)GGA>AGA	p.G219R		NM_001098612	NP_001092082	Q08ET2	SIG14_HUMAN	sialic acid binding Ig-like lectin 14 precursor	219	Ig-like C2-type 1.|Extracellular (Potential).				cell adhesion	integral to membrane|plasma membrane	protein binding|sugar binding			ovary(1)	1		all_neural(266;0.0299)		GBM - Glioblastoma multiforme(134;0.000965)|OV - Ovarian serous cystadenocarcinoma(262;0.0195)		ACCTGAGCTCCTTGGCGTTTC	0.647													18	22					0	0	1	0	0
FPR3	2359	broad.mit.edu	37	19	52327442	52327442	+	Silent	SNP	G	A	A	rs143644530		TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:52327442G>A	uc002pxt.1	+	2	625	c.441G>A	c.(439-441)ACG>ACA	p.T147T		NM_002030	NP_002021	P25089	FPR3_HUMAN	formyl peptide receptor-like 2	147	Helical; Name=4; (Potential).				cellular component movement|chemotaxis	integral to membrane|plasma membrane	N-formyl peptide receptor activity			lung(4)|breast(1)|skin(1)	6						GGGTGATGACGGGACTCTGGA	0.473													27	36					0	0	1	0	0
ZNF320	162967	broad.mit.edu	37	19	53384142	53384142	+	Missense_Mutation	SNP	A	G	G	rs145022961	byFrequency	TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:53384142A>G	uc002qag.2	-	4	1428	c.1237T>C	c.(1237-1239)TAC>CAC	p.Y413H	ZNF320_uc010eqh.1_5'Flank|ZNF320_uc010eqi.1_Intron|ZNF320_uc002qah.2_Missense_Mutation_p.Y359H|ZNF320_uc002qai.2_Missense_Mutation_p.Y413H	NM_207333	NP_997216	A2RRD8	ZN320_HUMAN	zinc finger protein 320	413	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.0534)		TCACATTCGTAAAGTTTCTCT	0.393													19	19					0	0	1	0	0
VN1R2	317701	broad.mit.edu	37	19	53762620	53762621	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:53762620_53762621CC>AT	uc002qbi.2	+	1	1076_1077	c.992_993CC>AT	c.(991-993)TCC>TAT	p.S331Y		NM_173856	NP_776255	Q8NFZ6	VN1R2_HUMAN	vomeronasal 1 receptor 2	331	Helical; Name=6; (Potential).				response to pheromone	integral to membrane|plasma membrane	pheromone receptor activity				0				GBM - Glioblastoma multiforme(134;0.00301)		TACGCCCTTTCCTTCATCACCT	0.446													45	89					0	0	1	0	0
LILRB3	11025	broad.mit.edu	37	19	54745902	54745902	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:54745902C>T	uc010erh.1	-	3	479	c.355G>A	c.(355-357)GGA>AGA	p.G119R	LILRA6_uc002qew.1_3'UTR|LILRB3_uc002qeh.1_Missense_Mutation_p.G119R|LILRB3_uc002qeg.1_RNA|LILRB3_uc002qei.1_Missense_Mutation_p.G119R|LILRA6_uc002qek.1_Missense_Mutation_p.G119R|LILRB3_uc002qej.1_RNA|LILRA6_uc002qel.1_Missense_Mutation_p.G119R|LILRA6_uc002qem.1_RNA|LILRB3_uc002qen.1_RNA|LILRB3_uc002qeo.1_Missense_Mutation_p.G119R|LILRB3_uc002qep.1_Missense_Mutation_p.G119R|LILRB3_uc002qeq.1_Missense_Mutation_p.G119R|LILRB3_uc002qer.1_RNA|LILRB3_uc002qes.1_Missense_Mutation_p.G119R|LILRA6_uc010yep.1_Missense_Mutation_p.G119R|LILRA6_uc010yeq.1_Missense_Mutation_p.G119R|LILRA6_uc002qet.3_RNA|LILRA6_uc002qeu.1_Missense_Mutation_p.G119R|LILRA6_uc002qev.1_5'Flank	NM_006864	NP_006855	O75022	LIRB3_HUMAN	leukocyte immunoglobulin-like receptor,	119	Extracellular (Potential).|Ig-like C2-type 2.				cell surface receptor linked signaling pathway|defense response	integral to plasma membrane	transmembrane receptor activity			skin(2)|ovary(1)	3	all_cancers(19;0.00723)|all_epithelial(19;0.00389)|all_lung(19;0.0175)|Lung NSC(19;0.0325)|Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		GTCCTCTCACCTGTCATCACC	0.642													45	139					0	0	1	0	0
LILRA1	11024	broad.mit.edu	37	19	55106227	55106227	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:55106227G>A	uc002qgh.1	+	4	350	c.168G>A	c.(166-168)CAG>CAA	p.Q56Q	LILRA2_uc010yfg.1_Intron|LILRA1_uc010yfh.1_Silent_p.Q56Q	NM_006863	NP_006854	O75019	LIRA1_HUMAN	leukocyte immunoglobulin-like receptor,	56	Ig-like C2-type 1.|Extracellular (Potential).				cell surface receptor linked signaling pathway|defense response|regulation of immune response	integral to membrane|plasma membrane	antigen binding|transmembrane receptor activity			skin(2)|ovary(1)	3				GBM - Glioblastoma multiforme(193;0.0348)		TGGAGACCCAGGAGTACCGTC	0.582													24	56					0	0	1	0	0
LILRP2	79166	broad.mit.edu	37	19	55221950	55221950	+	RNA	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:55221950G>A	uc002qgs.1	+	1		c.2350G>A			LILRP2_uc002qgt.1_RNA	NR_003061				Homo sapiens leukocyte immunoglobulin-like receptor pseudogene 2 (LILRP2), non-coding RNA.												0						CCTCAGGAGAGAACGTGACCC	0.637													8	33					0	0	1	0	0
KIR2DL3	3804	broad.mit.edu	37	19	55263930	55263930	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:55263930G>A	uc002qgv.2	+	8	1003	c.985G>A	c.(985-987)GAT>AAT	p.D329N	KIR2DS4_uc010yfj.1_5'Flank|KIR2DL3_uc002qgx.2_Missense_Mutation_p.D329N|KIR2DL3_uc002qgy.2_Missense_Mutation_p.D231N|KIR2DL3_uc010erw.1_Intron|KIR2DL1_uc002qgz.1_Intron|KIR2DL3_uc002qha.1_Intron|KIR3DP1_uc010yfi.1_5'Flank	NM_015868	NP_056952	P43628	KI2L3_HUMAN	killer cell immunoglobulin-like receptor, two	329	Cytoplasmic (Potential).				immune response|regulation of immune response	integral to plasma membrane	antigen binding|protein binding|receptor activity			ovary(2)	2				GBM - Glioblastoma multiforme(193;0.0192)		ACCCCCAACAGATATCATCGT	0.512													51	223					0	0	1	0	0
SYT5	6861	broad.mit.edu	37	19	55686338	55686338	+	Silent	SNP	G	A	A	rs141734238		TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:55686338G>A	uc002qjm.1	-	6	1798	c.738C>T	c.(736-738)TCC>TCT	p.S246S	SYT5_uc002qjp.2_Silent_p.S242S|SYT5_uc002qjn.1_Silent_p.S246S|SYT5_uc002qjo.1_Silent_p.S245S	NM_003180	NP_003171	O00445	SYT5_HUMAN	synaptotagmin V	246	Cytoplasmic (Potential).				energy reserve metabolic process|regulation of insulin secretion|synaptic transmission	cell junction|integral to membrane|recycling endosome membrane|synaptic vesicle membrane	metal ion binding|transporter activity				0			BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.0452)		CATAGCGGAGGGAGAAGCAGA	0.597													20	32					0	0	1	0	0
PTPRH	5794	broad.mit.edu	37	19	55715400	55715400	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:55715400C>T	uc002qjq.2	-	5	709	c.636G>A	c.(634-636)AGG>AGA	p.R212R	PTPRH_uc010esv.2_Intron|PTPRH_uc002qjs.2_Silent_p.R219R	NM_002842	NP_002833	Q9HD43	PTPRH_HUMAN	protein tyrosine phosphatase, receptor type, H	212	Extracellular (Potential).|Fibronectin type-III 3.				apoptosis	cytoplasm|integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(2)|large_intestine(1)|skin(1)	4		Renal(1328;0.245)	BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.0479)		CTCTCAGGTTCCTCACTGGGT	0.502													10	38					0	0	1	0	0
NLRP11	204801	broad.mit.edu	37	19	56321559	56321559	+	Silent	SNP	G	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:56321559G>T	uc010ygf.1	-	5	1128	c.417C>A	c.(415-417)ACC>ACA	p.T139T	NLRP11_uc002qlz.2_Silent_p.T40T|NLRP11_uc002qmb.2_Silent_p.T40T|NLRP11_uc002qmc.2_RNA|NLRP11_uc010ete.1_RNA	NM_145007	NP_659444	P59045	NAL11_HUMAN	NLR family, pyrin domain containing 11	139							ATP binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		Colorectal(82;0.0002)		GBM - Glioblastoma multiforme(193;0.0325)		AATAATAGCTGGTAGAATCAT	0.368													11	23					1.08611e-07	1.09597e-07	1	1	0
NLRP4	147945	broad.mit.edu	37	19	56373427	56373427	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:56373427G>A	uc002qmd.3	+	5	2510	c.2088G>A	c.(2086-2088)TTG>TTA	p.L696L	NLRP4_uc002qmf.2_Silent_p.L621L|NLRP4_uc010etf.2_Silent_p.L527L	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	696							ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		AGCCAGACTTGAAATACCTGA	0.443													14	53					0	0	1	0	0
NLRP13	126204	broad.mit.edu	37	19	56423853	56423853	+	Missense_Mutation	SNP	C	T	T	rs150988752		TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:56423853C>T	uc010ygg.1	-	5	1355	c.1330G>A	c.(1330-1332)GAT>AAT	p.D444N		NM_176810	NP_789780	Q86W25	NAL13_HUMAN	NACHT, leucine rich repeat and PYD containing	444	NACHT.						ATP binding			skin(4)|ovary(3)|pancreas(1)|lung(1)	9		Colorectal(82;3.48e-05)|Ovarian(87;0.0481)|Renal(1328;0.218)		GBM - Glioblastoma multiforme(193;0.0642)		GACTGGAGATCGTAATACCTC	0.483													30	45					0	0	1	0	0
NLRP5	126206	broad.mit.edu	37	19	56515323	56515323	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:56515323G>A	uc002qmj.2	+	2	304	c.304G>A	c.(304-306)GAG>AAG	p.E102K	NLRP5_uc002qmi.2_Missense_Mutation_p.E102K	NM_153447	NP_703148	P59047	NALP5_HUMAN	NACHT, LRR and PYD containing protein 5	102	DAPIN.					mitochondrion|nucleolus	ATP binding			ovary(3)|skin(2)|kidney(1)|central_nervous_system(1)	7		Colorectal(82;3.46e-05)|Ovarian(87;0.0481)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0326)		GTTTGAAATCGAGAATGCCAA	0.423													15	35					0	0	1	0	0
NLRP5	126206	broad.mit.edu	37	19	56515418	56515418	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:56515418G>A	uc002qmj.2	+	2	399	c.399G>A	c.(397-399)ATG>ATA	p.M133I	NLRP5_uc002qmi.2_Missense_Mutation_p.M133I	NM_153447	NP_703148	P59047	NALP5_HUMAN	NACHT, LRR and PYD containing protein 5	133	DAPIN.					mitochondrion|nucleolus	ATP binding			ovary(3)|skin(2)|kidney(1)|central_nervous_system(1)	7		Colorectal(82;3.46e-05)|Ovarian(87;0.0481)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0326)		TTGAAAACATGAACCTGCGAA	0.507													12	54					0	0	1	0	0
NLRP5	126206	broad.mit.edu	37	19	56539409	56539409	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:56539409G>A	uc002qmj.2	+	7	1810	c.1810G>A	c.(1810-1812)GAG>AAG	p.E604K	NLRP5_uc002qmi.2_Missense_Mutation_p.E585K	NM_153447	NP_703148	P59047	NALP5_HUMAN	NACHT, LRR and PYD containing protein 5	604						mitochondrion|nucleolus	ATP binding			ovary(3)|skin(2)|kidney(1)|central_nervous_system(1)	7		Colorectal(82;3.46e-05)|Ovarian(87;0.0481)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0326)		CCTGGAAATCGAGCCAGCTCT	0.522													14	25					0	0	1	0	0
GALP	85569	broad.mit.edu	37	19	56696603	56696603	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:56696603G>A	uc002qmo.1	+	6	397	c.315G>A	c.(313-315)ATG>ATA	p.M105I	GALP_uc010eti.2_3'UTR	NM_033106	NP_149097	Q9UBC7	GALP_HUMAN	galanin-like peptide isoform 1 precursor	105					neuropeptide signaling pathway	extracellular region	hormone activity				0		Colorectal(82;0.000147)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0507)		TGCTCAGCATGAAAATTCCCA	0.368													15	13					0	0	1	0	0
PEG3	5178	broad.mit.edu	37	19	57328375	57328375	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:57328375G>A	uc002qnu.2	-	7	1786	c.1435C>T	c.(1435-1437)CTC>TTC	p.L479F	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Missense_Mutation_p.L450F|PEG3_uc002qnv.2_Missense_Mutation_p.L479F|PEG3_uc002qnw.2_Missense_Mutation_p.L355F|PEG3_uc002qnx.2_Missense_Mutation_p.L353F|PEG3_uc010etr.2_Missense_Mutation_p.L479F	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	479					apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		TACTCATAGAGGTTCTCTCTA	0.443													21	79					0	0	1	0	0
USP29	57663	broad.mit.edu	37	19	57640962	57640962	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:57640962C>T	uc002qny.2	+	4	1275	c.919C>T	c.(919-921)CCA>TCA	p.P307S		NM_020903	NP_065954	Q9HBJ7	UBP29_HUMAN	ubiquitin specific peptidase 29	307					protein modification process|ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(6)|ovary(2)|breast(2)|pancreas(1)	11		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		ATTTGCAATTCCATCTTTTGC	0.443													32	42					0	0	1	0	0
USP29	57663	broad.mit.edu	37	19	57641952	57641952	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:57641952G>A	uc002qny.2	+	4	2265	c.1909G>A	c.(1909-1911)GAT>AAT	p.D637N		NM_020903	NP_065954	Q9HBJ7	UBP29_HUMAN	ubiquitin specific peptidase 29	637					protein modification process|ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(6)|ovary(2)|breast(2)|pancreas(1)	11		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		CCACTTTAGAGATAGGGCAAT	0.483													12	29					0	0	1	0	0
USP29	57663	broad.mit.edu	37	19	57642372	57642372	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:57642372C>T	uc002qny.2	+	4	2685	c.2329C>T	c.(2329-2331)CAA>TAA	p.Q777*		NM_020903	NP_065954	Q9HBJ7	UBP29_HUMAN	ubiquitin specific peptidase 29	777					protein modification process|ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(6)|ovary(2)|breast(2)|pancreas(1)	11		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		ATTAAGACTTCAAAAGGCTGA	0.463													13	22					0	0	1	0	0
ZIM3	114026	broad.mit.edu	37	19	57649879	57649879	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:57649879C>T	uc002qnz.1	-	3	489	c.103G>A	c.(103-105)GAT>AAT	p.D35N		NM_052882	NP_443114	Q96PE6	ZIM3_HUMAN	zinc finger, imprinted 3	35	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)|skin(1)	2		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.243)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		AGCATCACATCCCTGTACAAG	0.537													9	51					0	0	1	0	0
ZNF8	7554	broad.mit.edu	37	19	58805842	58805842	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:58805842C>T	uc002qry.1	+	4	798	c.668C>T	c.(667-669)TCC>TTC	p.S223F	ZNF8_uc002qrz.2_RNA	NM_021089	NP_066575	P17098	ZNF8_HUMAN	zinc finger protein 8	223					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		all_cancers(17;6.46e-05)|Lung NSC(17;0.0233)|all_neural(62;0.0381)|all_epithelial(17;0.0427)|all_lung(17;0.057)|Ovarian(87;0.17)|Colorectal(82;0.227)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.00619)		CAGACAGGCTCCCCAGGAAAA	0.483													15	16					0	0	1	0	0
ZBTB45	84878	broad.mit.edu	37	19	59025623	59025623	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr19:59025623T>C	uc002qtd.2	-	3	1626	c.1334A>G	c.(1333-1335)TAC>TGC	p.Y445C	SLC27A5_uc002qtc.2_5'Flank|ZBTB45_uc002qte.2_Missense_Mutation_p.Y445C|ZBTB45_uc002qtf.2_Missense_Mutation_p.Y445C	NM_032792	NP_116181	Q96K62	ZBT45_HUMAN	zinc finger and BTB domain containing 45	445	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(17;1.81e-17)|all_epithelial(17;1.21e-12)|Lung NSC(17;2.8e-05)|all_lung(17;0.000139)|Colorectal(82;0.000147)|Renal(17;0.00528)|all_neural(62;0.0133)|Ovarian(87;0.156)|Medulloblastoma(540;0.232)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0165)|Lung(386;0.18)		TTTGAGCAGGTAGTCGCGTAG	0.642													7	11					0	0	1	0	0
TPO	7173	broad.mit.edu	37	2	1481021	1481021	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:1481021C>T	uc002qww.2	+	8	1074	c.983C>T	c.(982-984)ACC>ATC	p.T328I	TPO_uc010ewj.2_Intron|TPO_uc002qwu.2_Missense_Mutation_p.T328I|TPO_uc002qwr.2_Missense_Mutation_p.T328I|TPO_uc002qwx.2_Missense_Mutation_p.T328I|TPO_uc010yio.1_Intron|TPO_uc010yip.1_Missense_Mutation_p.T328I	NM_000547	NP_000538	P07202	PERT_HUMAN	thyroid peroxidase isoform a	328	Extracellular (Potential).				cellular nitrogen compound metabolic process|hormone biosynthetic process|hydrogen peroxide catabolic process	cell surface|cytoplasm|integral to plasma membrane	calcium ion binding|heme binding|iodide peroxidase activity			ovary(7)|pancreas(6)|skin(5)|lung(1)|kidney(1)	20	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;0.0338)		all cancers(51;0.0356)|OV - Ovarian serous cystadenocarcinoma(76;0.0748)|Epithelial(75;0.12)	Carbimazole(DB00389)|Methimazole(DB00763)|Propylthiouracil(DB00550)	GACGCGTCCACCGTGTATGGC	0.706													8	5					0	0	1	0	0
KLF11	8462	broad.mit.edu	37	2	10192542	10192542	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:10192542C>T	uc002raf.1	+	4	1609	c.1447C>T	c.(1447-1449)CCA>TCA	p.P483S	KLF11_uc010yjc.1_Missense_Mutation_p.P466S	NM_003597	NP_003588	O14901	KLF11_HUMAN	Kruppel-like factor 11	483					apoptosis|negative regulation of cell proliferation|negative regulation of transcription from RNA polymerase II promoter|positive regulation of apoptosis|regulation of transcription involved in S phase of mitotic cell cycle	nucleus	sequence-specific DNA binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(2)	2	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.133)|OV - Ovarian serous cystadenocarcinoma(76;0.228)		CAAGAAGATCCCAGGCTGGCA	0.607													90	330					0	0	1	0	0
ROCK2	9475	broad.mit.edu	37	2	11367399	11367399	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:11367399G>A	uc002rbd.1	-	6	1298	c.849C>T	c.(847-849)TTC>TTT	p.F283F		NM_004850	NP_004841	O75116	ROCK2_HUMAN	Rho-associated, coiled-coil containing protein	283	Protein kinase.				axon guidance|cytokinesis|intracellular signal transduction	cytosol|plasma membrane	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|structural molecule activity			stomach(2)|skin(2)	4	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.137)|OV - Ovarian serous cystadenocarcinoma(76;0.162)		TCTCATAAAGGAAAACACCTA	0.353													28	107					0	0	1	0	0
WDR35	57539	broad.mit.edu	37	2	20166532	20166532	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:20166532C>T	uc002rdi.2	-	10	1255	c.1147G>A	c.(1147-1149)GGA>AGA	p.G383R	WDR35_uc002rdj.2_Missense_Mutation_p.G383R|WDR35_uc010ext.2_RNA|WDR35_uc002rdh.2_5'UTR	NM_001006657	NP_001006658	Q9P2L0	WDR35_HUMAN	WD repeat domain 35 isoform 1	383										ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CAGAAATCTCCACAGGTAGTA	0.373													7	32					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21229058	21229058	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:21229058G>A	uc002red.2	-	26	10810	c.10682C>T	c.(10681-10683)TCC>TTC	p.S3561F		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	3561					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	CTCCCAGAGGGAATATATGCG	0.458													138	494					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21230001	21230001	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:21230001G>A	uc002red.2	-	26	9867	c.9739C>T	c.(9739-9741)CAA>TAA	p.Q3247*		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	3247					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	CCAGGAATTTGAAAGGTCCTG	0.398													200	243					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21230343	21230343	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:21230343G>A	uc002red.2	-	26	9525	c.9397C>T	c.(9397-9399)CCT>TCT	p.P3133S		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	3133					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	CGCATTTCAGGAATTGTTAAA	0.373													109	463					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21234515	21234515	+	Missense_Mutation	SNP	A	G	G	rs151035908		TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:21234515A>G	uc002red.2	-	26	5353	c.5225T>C	c.(5224-5226)ATG>ACG	p.M1742T		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	1742					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TGAGCCCATCATGTCATTTGA	0.413													199	625					0	0	1	0	0
OTOF	9381	broad.mit.edu	37	2	26702507	26702507	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:26702507C>T	uc002rhk.2	-	17	2054	c.1927G>A	c.(1927-1929)GAA>AAA	p.E643K	OTOF_uc002rhh.2_5'Flank|OTOF_uc002rhi.2_5'Flank|OTOF_uc002rhj.2_5'Flank	NM_194248	NP_919224	Q9HC10	OTOF_HUMAN	otoferlin isoform a	643	Cytoplasmic (Potential).				cellular membrane fusion|sensory perception of sound|synaptic vesicle exocytosis	basolateral plasma membrane|cell junction|cytosol|endoplasmic reticulum membrane|integral to membrane|membrane fraction|synaptic vesicle membrane	calcium ion binding			ovary(3)|breast(2)|central_nervous_system(1)|pancreas(1)	7	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CCATCAACTTCGTTCCCATAG	0.627													19	21					0	0	1	0	0
IFT172	26160	broad.mit.edu	37	2	27672935	27672935	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:27672935G>A	uc002rku.2	-	36	4031	c.3980C>T	c.(3979-3981)CCT>CTT	p.P1327L	IFT172_uc010ezb.2_RNA	NM_015662	NP_056477	Q9UG01	IF172_HUMAN	selective LIM binding factor homolog	1327					cilium assembly	cilium	binding			large_intestine(1)|ovary(1)	2	Acute lymphoblastic leukemia(172;0.155)					ACGTTGGGGAGGCAGAAACTT	0.478													9	35					0	0	1	0	0
PLB1	151056	broad.mit.edu	37	2	28865907	28865907	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:28865907C>T	uc002rmb.1	+	58	4357	c.4357C>T	c.(4357-4359)CTG>TTG	p.L1453L	PLB1_uc010ezj.1_Silent_p.L1442L|PLB1_uc002rme.1_Silent_p.L418L|PLB1_uc002rmf.1_RNA	NM_153021	NP_694566	Q6P1J6	PLB1_HUMAN	phospholipase B1 precursor	1453	Cytoplasmic (Potential).				lipid catabolic process|retinoid metabolic process|steroid metabolic process	apical plasma membrane|integral to membrane	lysophospholipase activity|phospholipase A2 activity|retinyl-palmitate esterase activity			ovary(4)|large_intestine(2)|skin(2)|breast(1)	9	Acute lymphoblastic leukemia(172;0.155)					TCCAATGAGCCTGCGCACTGT	0.657													4	16					0	0	1	0	0
PPP1CB	5500	broad.mit.edu	37	2	29006829	29006829	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:29006829G>T	uc002rmg.2	+	6	737	c.577G>T	c.(577-579)GAT>TAT	p.D193Y	PPP1CB_uc010ymj.1_Missense_Mutation_p.D165Y|PPP1CB_uc010yml.1_Missense_Mutation_p.D165Y|PPP1CB_uc002rmh.2_Missense_Mutation_p.D193Y|SPDYA_uc002rmi.2_5'UTR	NM_206876	NP_996759	P62140	PP1B_HUMAN	protein phosphatase 1, catalytic subunit, beta	193					cell cycle|cell division|glycogen metabolic process|triglyceride catabolic process	MLL5-L complex|nucleolus|PTW/PP1 phosphatase complex	metal ion binding|myosin phosphatase activity|myosin-light-chain-phosphatase activity|protein binding			skin(1)	1	Acute lymphoblastic leukemia(172;0.155)					GAGACCTACTGATGTCCCTGA	0.343													5	37					1.23904e-05	1.24777e-05	1	1	0
CLIP4	79745	broad.mit.edu	37	2	29354162	29354162	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:29354162G>A	uc002rmv.2	+	3	411	c.172G>A	c.(172-174)GAA>AAA	p.E58K	CLIP4_uc002rmu.2_Missense_Mutation_p.E58K|CLIP4_uc010ezm.1_Missense_Mutation_p.E58K|CLIP4_uc002rmw.2_RNA|CLIP4_uc010ymn.1_Missense_Mutation_p.E40K	NM_024692	NP_078968	Q8N3C7	CLIP4_HUMAN	CAP-GLY domain containing linker protein family,	58										ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)					ATCATGCCAGGAAATTCTTTT	0.264													12	33					0	0	1	0	0
CLIP4	79745	broad.mit.edu	37	2	29386729	29386729	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:29386729C>T	uc002rmv.2	+	13	1806	c.1567C>T	c.(1567-1569)CAT>TAT	p.H523Y	CLIP4_uc002rmu.2_Missense_Mutation_p.H523Y|CLIP4_uc002rmw.2_RNA	NM_024692	NP_078968	Q8N3C7	CLIP4_HUMAN	CAP-GLY domain containing linker protein family,	523	CAP-Gly 2.									ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)					TGAAAAACCCCATGGCAAGAA	0.388													30	34					0	0	1	0	0
CAPN13	92291	broad.mit.edu	37	2	30973992	30973992	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:30973992G>A	uc002rnn.2	-	11	1389	c.1213C>T	c.(1213-1215)CCA>TCA	p.P405S	CAPN13_uc002rnp.1_Missense_Mutation_p.P405S	NM_144575	NP_653176	Q6MZZ7	CAN13_HUMAN	calpain 13	405					proteolysis	intracellular	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity			large_intestine(1)|ovary(1)	2	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.155)					AAATCGAGTGGAAATTTTGCA	0.463													4	17					0	0	1	0	0
GALNT14	79623	broad.mit.edu	37	2	31165076	31165076	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:31165076C>T	uc002rnr.2	-	9	1541	c.922G>A	c.(922-924)GAG>AAG	p.E308K	GALNT14_uc002rnq.2_Missense_Mutation_p.E288K|GALNT14_uc002rns.2_Missense_Mutation_p.E313K|GALNT14_uc010ymr.1_Missense_Mutation_p.E273K|GALNT14_uc010ezo.1_Missense_Mutation_p.E275K|GALNT14_uc010ezp.1_Intron	NM_024572	NP_078848	Q96FL9	GLT14_HUMAN	N-acetylgalactosaminyltransferase 14	308	Lumenal (Potential).|Catalytic subdomain B.					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			upper_aerodigestive_tract(2)|skin(1)	3	Acute lymphoblastic leukemia(172;0.155)					CCAAAGTTCTCCCCACCCCAG	0.522													22	58					0	0	1	0	0
SRD5A2	6716	broad.mit.edu	37	2	31754406	31754406	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:31754406G>A	uc002rnw.1	-	5	740	c.669C>T	c.(667-669)TTC>TTT	p.F223F		NM_000348	NP_000339	P31213	S5A2_HUMAN	3-oxo-5 alpha-steroid 4-dehydrogenase 2	223	Helical; (Potential).				androgen biosynthetic process|cell differentiation|cell-cell signaling|male gonad development	endoplasmic reticulum membrane|integral to membrane|microsome	3-oxo-5-alpha-steroid 4-dehydrogenase activity|sterol 5-alpha reductase activity				0	Acute lymphoblastic leukemia(172;0.155)				Azelaic Acid(DB00548)|Dutasteride(DB01126)	GCAGCCCAAGGAAACAAAGTG	0.473													5	21					0	0	1	0	0
LTBP1	4052	broad.mit.edu	37	2	33412096	33412096	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:33412096C>T	uc002ros.2	+	6	1375	c.1375C>T	c.(1375-1377)CAT>TAT	p.H459Y	LTBP1_uc002rot.2_Missense_Mutation_p.H133Y|LTBP1_uc002rou.2_Missense_Mutation_p.H133Y|LTBP1_uc002rov.2_Missense_Mutation_p.H133Y|LTBP1_uc010ymz.1_Missense_Mutation_p.H133Y|LTBP1_uc010yna.1_Missense_Mutation_p.H133Y	NM_206943	NP_996826	Q14766	LTBP1_HUMAN	latent transforming growth factor beta binding	459					negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta	proteinaceous extracellular matrix	calcium ion binding|growth factor binding|transforming growth factor beta receptor activity			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|central_nervous_system(1)	8	all_hematologic(175;0.115)	Medulloblastoma(90;0.215)				GCATGTCATCCATTCAACACA	0.512													9	40					0	0	1	0	0
CDKL4	344387	broad.mit.edu	37	2	39406415	39406415	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:39406415G>A	uc002rrm.2	-	8	840	c.840C>T	c.(838-840)CTC>CTT	p.L280L	CDKL4_uc010fal.1_Silent_p.L280L	NM_001009565	NP_001009565	Q5MAI5	CDKL4_HUMAN	cyclin-dependent kinase-like 4	280	Protein kinase.					cytoplasm	ATP binding|cyclin-dependent protein kinase activity			ovary(1)	1		all_hematologic(82;0.248)				AGCTCTCCAGGAGTTGGGAAC	0.433													9	53					0	0	1	0	0
SLC8A1	6546	broad.mit.edu	37	2	40397451	40397451	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:40397451G>A	uc002rrx.2	-	6	2032	c.2008C>T	c.(2008-2010)CCG>TCG	p.P670S	uc002rrw.2_Intron|SLC8A1_uc002rry.2_Missense_Mutation_p.P665S|SLC8A1_uc002rrz.2_Missense_Mutation_p.P657S|SLC8A1_uc002rsa.2_Intron|SLC8A1_uc002rsd.3_Intron|SLC8A1_uc002rsb.1_Missense_Mutation_p.P662S	NM_021097	NP_066920	P32418	NAC1_HUMAN	solute carrier family 8 (sodium/calcium	670	Cytoplasmic (Potential).				cell communication|muscle contraction|platelet activation	integral to plasma membrane	calcium:sodium antiporter activity|calmodulin binding|heat shock protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4					Alpha-Linolenic Acid(DB00132)|Icosapent(DB00159)	GAGAGAATCGGATGTTCTCTA	0.418													12	29					0	0	1	0	0
SLC8A1	6546	broad.mit.edu	37	2	40405618	40405618	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:40405618G>A	uc002rrx.2	-	2	1848	c.1824C>T	c.(1822-1824)GTC>GTT	p.V608V	uc002rrw.2_Intron|SLC8A1_uc002rry.2_Silent_p.V608V|SLC8A1_uc002rrz.2_Intron|SLC8A1_uc002rsa.2_Intron|SLC8A1_uc002rsd.3_Intron|SLC8A1_uc002rsb.1_Intron	NM_021097	NP_066920	P32418	NAC1_HUMAN	solute carrier family 8 (sodium/calcium	608	Calx-beta 2.|Cytoplasmic (Potential).				cell communication|muscle contraction|platelet activation	integral to plasma membrane	calcium:sodium antiporter activity|calmodulin binding|heat shock protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4					Alpha-Linolenic Acid(DB00132)|Icosapent(DB00159)	CAATTACCTTGACTGATATTG	0.438													84	115					0	0	1	0	0
PKDCC	91461	broad.mit.edu	37	2	42284745	42284745	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:42284745C>T	uc002rsg.2	+	7	1578	c.1399C>T	c.(1399-1401)CGG>TGG	p.R467W		NM_138370	NP_612379	Q504Y2	PKDCC_HUMAN	protein kinase-like protein SgK493	467	Protein kinase.				cell differentiation|embryonic digestive tract development|lung alveolus development|negative regulation of Golgi to plasma membrane protein transport|ossification|palate development|positive regulation of bone mineralization|positive regulation of chondrocyte differentiation|protein transport	Golgi apparatus	ATP binding|protein kinase activity			breast(1)	1						CCCCCCAGGTCGGCAGCTGGT	0.532													5	14					0	0	1	0	0
ABCG8	64241	broad.mit.edu	37	2	44079992	44079992	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:44079992C>T	uc002rtq.2	+	6	1039	c.949C>T	c.(949-951)CCT>TCT	p.P317S	ABCG8_uc010yoa.1_Missense_Mutation_p.P317S	NM_022437	NP_071882	Q9H221	ABCG8_HUMAN	ATP-binding cassette sub-family G member 8	317	Cytoplasmic (Potential).				cholesterol efflux|cholesterol homeostasis|excretion|lipid metabolic process|negative regulation of intestinal cholesterol absorption|negative regulation of intestinal phytosterol absorption	apical plasma membrane|integral to membrane	ATP binding|ATPase activity|protein heterodimerization activity			skin(3)|ovary(1)	4		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)				CTACAGCAATCCTGCTGACTT	0.597													75	240					0	0	1	0	0
KLRAQ1	129285	broad.mit.edu	37	2	48718290	48718290	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:48718290A>T	uc002rwm.2	+	15	1765	c.1580A>T	c.(1579-1581)TAT>TTT	p.Y527F	KLRAQ1_uc002rwj.2_Missense_Mutation_p.Y527F|KLRAQ1_uc002rwl.2_Missense_Mutation_p.Y481F|KLRAQ1_uc002rwk.2_Missense_Mutation_p.Y527F|KLRAQ1_uc010yok.1_Missense_Mutation_p.Y527F	NM_001135629	NP_001129101	Q6ZMI0	KLRAQ_HUMAN	KLRAQ motif containing 1 isoform 1	527										ovary(1)	1						GCTGCTGCCTATATGAAGTCT	0.393													13	15					0	0	1	0	0
NRXN1	9378	broad.mit.edu	37	2	51254766	51254766	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:51254766G>A	uc010fbq.2	-	2	2123	c.646C>T	c.(646-648)CCG>TCG	p.P216S	NRXN1_uc002rxe.3_Missense_Mutation_p.P216S|NRXN1_uc002rxd.1_Missense_Mutation_p.P216S	NM_001135659	NP_001129131	P58400	NRX1B_HUMAN	neurexin 1 isoform alpha2 precursor	Error:Variant_position_missing_in_P58400_after_alignment					angiogenesis|neuron cell-cell adhesion|neuronal signal transduction	cell surface|endocytic vesicle|integral to membrane|presynaptic membrane	cell adhesion molecule binding|receptor binding			ovary(2)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.192)	Lung(47;0.0813)|LUSC - Lung squamous cell carcinoma(58;0.116)			GCCTCGCACGGGCTTCCCCCG	0.701													3	7					0	0	1	0	0
SPTBN1	6711	broad.mit.edu	37	2	54852043	54852043	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:54852043C>T	uc002rxu.2	+	11	1534	c.1285C>T	c.(1285-1287)CGC>TGC	p.R429C	SPTBN1_uc002rxv.1_Missense_Mutation_p.R429C|SPTBN1_uc002rxx.2_Missense_Mutation_p.R416C	NM_003128	NP_003119	Q01082	SPTB2_HUMAN	spectrin, beta, non-erythrocytic 1 isoform 1	429	Spectrin 2.				actin filament capping|axon guidance	cytosol|nucleolus|plasma membrane|sarcomere|spectrin	actin binding|calmodulin binding|protein binding|structural constituent of cytoskeleton			ovary(3)|breast(2)|central_nervous_system(2)|skin(1)	8			Lung(47;0.24)			CAGATTTGATCGCAAGGCAGC	0.488													10	40					0	0	1	0	0
MEIS1	4211	broad.mit.edu	37	2	66667037	66667037	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:66667037C>T	uc002sdu.2	+	3	759	c.302C>T	c.(301-303)CCC>CTC	p.P101L	MEIS1_uc002sdt.2_Missense_Mutation_p.P101L|MEIS1_uc002sdv.2_Missense_Mutation_p.P99L|MEIS1_uc010yqh.1_RNA|MEIS1_uc010yqi.1_Missense_Mutation_p.P36L|MEIS1_uc002sdw.1_5'Flank	NM_002398	NP_002389	O00470	MEIS1_HUMAN	Meis homeobox 1	101							sequence-specific DNA binding transcription factor activity				0						ACTTGTACCCCCCGCGAGCCG	0.478													16	27					0	0	1	0	0
AAK1	22848	broad.mit.edu	37	2	69708038	69708039	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:69708038_69708039GG>AA	uc002sfp.2	-	19	3027_3028	c.2522_2523CC>TT	c.(2521-2523)CCC>CTT	p.P841L		NM_014911	NP_055726	Q2M2I8	AAK1_HUMAN	AP2 associated kinase 1	841						coated pit|mitochondrion|plasma membrane	ATP binding|protein serine/threonine kinase activity				0						GGAGGCGCTGGGGAACTGGGGG	0.535													3	15					0	0	1	0	0
ASPRV1	151516	broad.mit.edu	37	2	70188629	70188629	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:70188629C>T	uc002sfz.3	-	1	769	c.192G>A	c.(190-192)CTG>CTA	p.L64L		NM_152792	NP_690005	Q53RT3	APRV1_HUMAN	aspartic peptidase, retroviral-like 1 precursor	64	Helical; (Potential).				protein maturation by peptide bond cleavage|skin development		aspartic-type endopeptidase activity			ovary(1)	1						ACCCACAGAGCAGTGTCGGCG	0.657													12	29					0	0	1	0	0
ADD2	119	broad.mit.edu	37	2	70919565	70919565	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:70919565G>A	uc002sgz.2	-	7	1140	c.675C>T	c.(673-675)ATC>ATT	p.I225I	ADD2_uc010fds.1_RNA|ADD2_uc002sgy.2_Silent_p.I225I|ADD2_uc002sha.2_Intron|ADD2_uc002sgx.2_Silent_p.I225I|ADD2_uc010fdt.1_Silent_p.I225I|ADD2_uc002shc.1_Silent_p.I225I|ADD2_uc002shd.1_Intron|ADD2_uc010fdu.1_Silent_p.I241I	NM_001617	NP_001608	P35612	ADDB_HUMAN	adducin 2 isoform a	225					actin filament bundle assembly|barbed-end actin filament capping|positive regulation of protein binding	cytoplasm|F-actin capping protein complex|plasma membrane	actin filament binding|calmodulin binding|metal ion binding|protein heterodimerization activity|protein homodimerization activity|spectrin binding			ovary(2)|pancreas(1)	3						GCAGGTGGATGATGCAGCGCA	0.607													13	17					0	0	1	0	0
CLEC4F	165530	broad.mit.edu	37	2	71043462	71043462	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:71043462G>A	uc002shf.2	-	4	1128	c.1051C>T	c.(1051-1053)CGT>TGT	p.R351C	CLEC4F_uc010yqv.1_Missense_Mutation_p.R351C	NM_173535	NP_775806	Q8N1N0	CLC4F_HUMAN	C-type lectin, superfamily member 13	351	Extracellular (Potential).				endocytosis	integral to membrane	receptor activity|sugar binding			ovary(5)	5						TGGTCCAGACGGCCATTTGCT	0.408													27	55					0	0	1	0	0
CD207	50489	broad.mit.edu	37	2	71060973	71060973	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:71060973G>A	uc002shg.2	-	3	416	c.369C>T	c.(367-369)TTC>TTT	p.F123F		NM_015717	NP_056532	Q9UJ71	CLC4K_HUMAN	CD207 antigen, langerin	123	Extracellular (Potential).				defense response to virus	endocytic vesicle|integral to membrane	mannose binding			ovary(1)|lung(1)	2						TTAACTTCAGGAACTGAGAAC	0.463													14	41					0	0	1	0	0
VAX2	25806	broad.mit.edu	37	2	71159921	71159921	+	Missense_Mutation	SNP	C	G	G	rs140787534		TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:71159921C>G	uc002shh.2	+	3	492	c.460C>G	c.(460-462)CGC>GGC	p.R154G		NM_012476	NP_036608	Q9UIW0	VAX2_HUMAN	ventral anterior homeobox 2	154	Homeobox.				ectoderm development|visual perception	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						CCAGAACCGCCGCACCAAGCA	0.617													11	20					0	0	1	0	0
VAX2	25806	broad.mit.edu	37	2	71160139	71160139	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:71160139C>T	uc002shh.2	+	3	710	c.678C>T	c.(676-678)TCC>TCT	p.S226S	ATP6V1B1_uc002shi.1_5'Flank|ATP6V1B1_uc002shj.2_5'Flank|ATP6V1B1_uc010fdv.2_5'Flank|ATP6V1B1_uc010fdw.2_5'Flank	NM_012476	NP_036608	Q9UIW0	VAX2_HUMAN	ventral anterior homeobox 2	226					ectoderm development|visual perception	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						GGAACTCCTCCCCACGCCTCA	0.701													12	14					0	0	1	0	0
ZNF638	27332	broad.mit.edu	37	2	71653716	71653716	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:71653716C>T	uc002shx.2	+	24	5036	c.4717C>T	c.(4717-4719)CCT>TCT	p.P1573S	ZNF638_uc002shy.2_Missense_Mutation_p.P1573S|ZNF638_uc002shz.2_Missense_Mutation_p.P1573S|ZNF638_uc002sia.2_Missense_Mutation_p.P1573S|ZNF638_uc002sib.1_3'UTR|ZNF638_uc010fed.2_Intron|ZNF638_uc002sic.2_Missense_Mutation_p.P670S|ZNF638_uc002sid.2_5'UTR	NM_014497	NP_055312	Q14966	ZN638_HUMAN	zinc finger protein 638	1573					RNA splicing	cytoplasm|nuclear speck	double-stranded DNA binding|nucleotide binding|RNA binding|zinc ion binding			pancreas(2)|ovary(1)|skin(1)	4						CAAAAATGTTCCTTTCTCTGA	0.393													19	31					0	0	1	0	0
DYSF	8291	broad.mit.edu	37	2	71871135	71871135	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:71871135C>T	uc002sie.2	+	41	4827	c.4451C>T	c.(4450-4452)TCC>TTC	p.S1484F	DYSF_uc010feg.2_Missense_Mutation_p.S1515F|DYSF_uc010feh.2_Missense_Mutation_p.S1491F|DYSF_uc002sig.3_Missense_Mutation_p.S1470F|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Missense_Mutation_p.S1505F|DYSF_uc010fef.2_Missense_Mutation_p.S1522F|DYSF_uc010fei.2_Missense_Mutation_p.S1501F|DYSF_uc010fek.2_Missense_Mutation_p.S1502F|DYSF_uc010fej.2_Missense_Mutation_p.S1492F|DYSF_uc010fel.2_Missense_Mutation_p.S1471F|DYSF_uc010feo.2_Missense_Mutation_p.S1516F|DYSF_uc010fem.2_Missense_Mutation_p.S1506F|DYSF_uc010fen.2_Missense_Mutation_p.S1523F|DYSF_uc002sif.2_Missense_Mutation_p.S1485F|DYSF_uc010yqy.1_Missense_Mutation_p.S365F|DYSF_uc010yqz.1_Missense_Mutation_p.S245F	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	1484	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						TTCTTTGCCTCCATAGGGGAG	0.502													11	15					0	0	1	0	0
TET3	200424	broad.mit.edu	37	2	74307655	74307655	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:74307655C>T	uc002skb.3	+	3	2211	c.2211C>T	c.(2209-2211)ATC>ATT	p.I737I		NM_144993	NP_659430	O43151	TET3_HUMAN	tet oncogene family member 3	737							metal ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen				0						CCATCCGGATCGAGAAGGTCA	0.547													11	21					0	0	1	0	0
HK2	3099	broad.mit.edu	37	2	75094879	75094879	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:75094879C>T	uc002snd.2	+	3	2269	c.343C>T	c.(343-345)CCT>TCT	p.P115S		NM_000189	NP_000180	P52789	HXK2_HUMAN	hexokinase 2	115	Regulatory.				apoptotic mitochondrial changes|glucose transport|glycolysis|transmembrane transport	cytosol|mitochondrial outer membrane	ATP binding|glucokinase activity			ovary(1)|lung(1)	2						CTATGCCATCCCTGAGGACAT	0.522													103	213					0	0	1	0	0
LRRTM4	80059	broad.mit.edu	37	2	77745548	77745548	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:77745548C>T	uc002snr.2	-	3	1862	c.1447G>A	c.(1447-1449)GAG>AAG	p.E483K	LRRTM4_uc002snq.2_Missense_Mutation_p.E483K|LRRTM4_uc002sns.2_Missense_Mutation_p.E483K|LRRTM4_uc002snt.2_Missense_Mutation_p.E484K	NM_001134745	NP_001128217	Q86VH4	LRRT4_HUMAN	leucine rich repeat transmembrane neuronal 4	483	Cytoplasmic (Potential).					integral to membrane				pancreas(3)|ovary(1)	4				Colorectal(11;0.059)		ACATAATACTCCTGTAAAGGG	0.473													16	26					0	0	1	0	0
POLR1A	25885	broad.mit.edu	37	2	86257385	86257385	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:86257385C>T	uc002sqs.2	-	31	5092	c.4713G>A	c.(4711-4713)AAG>AAA	p.K1571K	POLR1A_uc010ytb.1_Silent_p.K937K	NM_015425	NP_056240	O95602	RPA1_HUMAN	DNA-directed RNA polymerase I A	1571					termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription initiation from RNA polymerase I promoter	DNA-directed RNA polymerase I complex|nucleoplasm	DNA binding|DNA-directed RNA polymerase activity|protein binding|zinc ion binding			ovary(2)|skin(1)	3						CCTTCTCGTTCTTATTGTTGG	0.502													39	66					0	0	1	0	0
RMND5A	64795	broad.mit.edu	37	2	88035245	88035245	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:88035245C>T	uc002srs.3	+	8	1735	c.840C>T	c.(838-840)TCC>TCT	p.S280S				Q9H871	RMD5A_HUMAN	SubName: Full=cDNA FLJ10361 fis, clone NT2RM2001256, highly similar to Anaphase-promoting complex subunit 1;	Error:Variant_position_missing_in_Q9H871_after_alignment										ovary(1)|skin(1)	2						AGTCATACTCCTTAGCTGCTG	0.463													10	28					0	0	1	0	0
Unknown	0	broad.mit.edu	37	2	89231920	89231921	+	RNA	DNP	CC	TT	TT			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:89231920_89231921CC>TT	uc010ytr.1	-	109		c.8313_8314GG>AA			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		ACTGAGGAGTCCTGATCAGTCA	0.535													8	52					0	0	1	0	0
Unknown	0	broad.mit.edu	37	2	89266240	89266240	+	RNA	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:89266240G>A	uc010ytr.1	-	94		c.7452C>T			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		GGAGCTGAGCGGGGACCCTCA	0.577													60	114					0	0	1	0	0
Unknown	0	broad.mit.edu	37	2	89416874	89416874	+	RNA	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:89416874C>T	uc010ytr.1	-	42		c.4728G>A			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		GTTGCAAAATCTTCAGGCTGC	0.502													38	73					0	0	1	0	0
Unknown	0	broad.mit.edu	37	2	95552713	95552713	+	RNA	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:95552713C>T	uc002stv.1	-	7		c.877G>A								Homo sapiens cDNA FLJ44118 fis, clone TESTI4047069.																		TGGCAGAATCCAGTAAAACAA	0.408													11	18					0	0	1	0	0
SNRNP200	23020	broad.mit.edu	37	2	96950119	96950119	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:96950119G>A	uc002svu.2	-	31	4455	c.4369C>T	c.(4369-4371)CAC>TAC	p.H1457Y	SNRNP200_uc002svt.2_Missense_Mutation_p.H67Y|SNRNP200_uc010yuj.1_RNA|SNRNP200_uc002svv.1_5'UTR	NM_014014	NP_054733	O75643	U520_HUMAN	activating signal cointegrator 1 complex subunit	1457	DEVH box.|Helicase ATP-binding 2.					catalytic step 2 spliceosome|nucleoplasm|U5 snRNP	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			ovary(5)|skin(4)|large_intestine(1)	10						CCGATAAGGTGGACCTCATCC	0.547													30	38					0	0	1	0	0
LYG2	254773	broad.mit.edu	37	2	99861793	99861793	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:99861793C>T	uc002szw.1	-	4	426	c.313G>A	c.(313-315)GAA>AAA	p.E105K	MRPL30_uc002szl.1_Intron|LYG2_uc010fip.1_Missense_Mutation_p.E105K|LYG2_uc002szx.1_Missense_Mutation_p.E105K	NM_175735	NP_783862	Q86SG7	LYG2_HUMAN	lysozyme G-like 2 precursor	105		By similarity.			cell wall macromolecule catabolic process|peptidoglycan catabolic process	extracellular region	lysozyme activity			ovary(1)	1						CCATGGCTTTCCCTGGAGATG	0.512													10	66					0	0	1	0	0
NMS	129521	broad.mit.edu	37	2	101095818	101095818	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:101095818C>T	uc002tan.1	+	6	272	c.265C>T	c.(265-267)CCT>TCT	p.P89S		NM_001011717	NP_001011717	Q5H8A3	NMS_HUMAN	neuromedin S precursor	89					neuropeptide signaling pathway|regulation of smooth muscle contraction	extracellular region				ovary(1)	1						GTTGCAGTTTCCTCCAGTGCA	0.527													31	33					0	0	1	0	0
NMS	129521	broad.mit.edu	37	2	101097621	101097621	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:101097621C>T	uc002tan.1	+	8	413	c.406C>T	c.(406-408)CTT>TTT	p.L136F		NM_001011717	NP_001011717	Q5H8A3	NMS_HUMAN	neuromedin S precursor	136					neuropeptide signaling pathway|regulation of smooth muscle contraction	extracellular region				ovary(1)	1						ACCCTTTTTCCTTTTCAGGGT	0.448													21	95					0	0	1	0	0
TBC1D8	11138	broad.mit.edu	37	2	101670715	101670715	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:101670715G>A	uc010fiv.2	-	4	572	c.441C>T	c.(439-441)TTC>TTT	p.F147F	TBC1D8_uc010yvw.1_Silent_p.F162F|TBC1D8_uc002tau.3_5'UTR	NM_001102426	NP_001095896	O95759	TBCD8_HUMAN	TBC1 domain family, member 8	147	GRAM 1.				blood circulation|positive regulation of cell proliferation	intracellular|membrane	calcium ion binding|Rab GTPase activator activity			ovary(3)	3						ACCTGGCCTCGAACTTCACCA	0.612													4	6					0	0	1	0	0
IL1RL2	8808	broad.mit.edu	37	2	102805667	102805667	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:102805667C>T	uc002tbs.2	+	3	316	c.190C>T	c.(190-192)CCA>TCA	p.P64S	IL1RL2_uc002tbt.2_Intron	NM_003854	NP_003845	Q9HB29	ILRL2_HUMAN	interleukin 1 receptor-like 2 precursor	64	Extracellular (Potential).|Ig-like C2-type 1.				cellular defense response|innate immune response	integral to plasma membrane	interleukin-1, Type I, activating receptor activity			ovary(2)	2						TAGCAAAATCCCAGTGTCCAA	0.418													10	26					0	0	1	0	0
IL1RL1	9173	broad.mit.edu	37	2	102964478	102964478	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:102964478C>T	uc002tbu.1	+	9	1315	c.1044C>T	c.(1042-1044)ATC>ATT	p.I348I	IL18R1_uc002tbw.3_Intron	NM_016232	NP_057316	Q01638	ILRL1_HUMAN	interleukin 1 receptor-like 1 isoform 1	348	Helical; (Potential).				innate immune response	integral to membrane	interleukin-1 receptor activity|receptor signaling protein activity			skin(2)|ovary(1)|central_nervous_system(1)	4						TCCTGGTTATCATCCTAAAAA	0.348													6	26					0	0	1	0	0
IL18RAP	8807	broad.mit.edu	37	2	103063665	103063665	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:103063665G>A	uc002tbx.2	+	10	1692	c.1208G>A	c.(1207-1209)GGG>GAG	p.G403E	IL18RAP_uc010fiz.2_Missense_Mutation_p.G261E	NM_003853	NP_003844	O95256	I18RA_HUMAN	interleukin 18 receptor accessory protein	403	Cytoplasmic (Potential).				cell surface receptor linked signaling pathway|inflammatory response|innate immune response	integral to membrane	transmembrane receptor activity			skin(3)|ovary(2)	5						CAGACGCTTGGGGGTAAGTTT	0.537													62	71					0	0	1	0	0
SLC9A4	389015	broad.mit.edu	37	2	103120016	103120016	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:103120016G>A	uc002tbz.3	+	3	1287	c.830G>A	c.(829-831)GGG>GAG	p.G277E		NM_001011552	NP_001011552	Q6AI14	SL9A4_HUMAN	solute carrier family 9 (sodium/hydrogen	277	Helical; Name=H/M6; (Potential).				regulation of pH	apical plasma membrane|basolateral plasma membrane|integral to membrane	sodium:hydrogen antiporter activity			skin(2)|central_nervous_system(1)	3						GGGCTTGGAGGGGTATTGTTT	0.398													12	51					0	0	1	0	0
ST6GAL2	84620	broad.mit.edu	37	2	107460085	107460085	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:107460085C>T	uc002tdq.2	-	2	468	c.349G>A	c.(349-351)GGG>AGG	p.G117R	ST6GAL2_uc002tdr.2_Missense_Mutation_p.G117R|ST6GAL2_uc002tds.3_Missense_Mutation_p.G117R	NM_001142351	NP_001135823	Q96JF0	SIAT2_HUMAN	ST6 beta-galactosamide	117	Lumenal (Potential).				growth|multicellular organismal development|oligosaccharide metabolic process|protein glycosylation	Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,6-sialyltransferase activity			pancreas(6)|ovary(4)|skin(1)	11						GATTTTCTCCCCACCTGGGAT	0.532													27	110					0	0	1	0	0
SULT1C3	442038	broad.mit.edu	37	2	108872049	108872049	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:108872049C>T	uc010ywo.1	+	4	421	c.421C>T	c.(421-423)CCC>TCC	p.P141S		NM_001008743	NP_001008743	Q6IMI6	ST1C3_HUMAN	sulfotransferase family, cytosolic, 1C, member	141	PAPS.					cytoplasm	alcohol sulfotransferase activity			skin(1)	1						GGCCAGAAATCCCAAGGATTG	0.423													25	100					0	0	1	0	0
ACOXL	55289	broad.mit.edu	37	2	111556630	111556630	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:111556630G>A	uc002tgr.3	+	7	724	c.500G>A	c.(499-501)GGA>GAA	p.G167E	ACOXL_uc010fkc.2_Missense_Mutation_p.G167E|ACOXL_uc010yxk.1_Missense_Mutation_p.G167E	NM_001105516	NP_001098986	Q9NUZ1	ACOXL_HUMAN	acyl-Coenzyme A oxidase-like 2	167					fatty acid beta-oxidation	peroxisome	acyl-CoA dehydrogenase activity|acyl-CoA oxidase activity				0						GATGAAAACGGAAGCTTGTAC	0.507													29	50					0	0	1	0	0
IL1RN	3557	broad.mit.edu	37	2	113875605	113875605	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:113875605G>A	uc002tiz.2	+	1	136	c.10G>A	c.(10-12)GCT>ACT	p.A4T	IL1RN_uc002tix.1_Intron|IL1RN_uc002tiy.2_5'UTR|IL1RN_uc002tja.2_Missense_Mutation_p.E4K	NM_173841	NP_776213	P18510	IL1RA_HUMAN	interleukin 1 receptor antagonist isoform 2	Error:Variant_position_missing_in_P18510_after_alignment					immune response|inflammatory response|response to glucocorticoid stimulus	centrosome|extracellular space|nucleus|plasma membrane	cytokine activity|interleukin-1 receptor antagonist activity			skin(2)	2					Anakinra(DB00026)	CATGGCTTTAGGTAAGCTCCT	0.483									Lichen_Sclerosis_et_Atrophicus_Familial_Clustering_of				7	45					0	0	1	0	0
MARCO	8685	broad.mit.edu	37	2	119739047	119739047	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:119739047G>A	uc002tln.1	+	9	961	c.829G>A	c.(829-831)GGG>AGG	p.G277R	MARCO_uc010yyf.1_Missense_Mutation_p.G199R	NM_006770	NP_006761	Q9UEW3	MARCO_HUMAN	macrophage receptor with collagenous structure	277	Collagen-like.|Extracellular (Potential).				cell surface receptor linked signaling pathway|innate immune response	collagen|integral to plasma membrane	pattern recognition receptor activity|scavenger receptor activity			ovary(3)|skin(2)|central_nervous_system(1)	6						TGGAGCCCAGGGGAGTAAAGG	0.522													9	17					0	0	1	0	0
EPB41L5	57669	broad.mit.edu	37	2	120857838	120857838	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:120857838G>A	uc002tmg.2	+	15	1323	c.1197G>A	c.(1195-1197)TCG>TCA	p.S399S	EPB41L5_uc010flk.2_Silent_p.S399S|EPB41L5_uc010fll.2_Silent_p.S399S|EPB41L5_uc002tmh.3_Silent_p.S399S|EPB41L5_uc010flm.2_Silent_p.S203S	NM_020909	NP_065960	Q9HCM4	E41L5_HUMAN	erythrocyte membrane protein band 4.1 like 5	399						cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding			ovary(1)	1						ATAATGTTTCGACCCAAAGTA	0.318													13	18					0	0	1	0	0
BIN1	274	broad.mit.edu	37	2	127828159	127828159	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:127828159G>A	uc002tns.1	-	4	630	c.285C>T	c.(283-285)CCC>CCT	p.P95P	BIN1_uc010yzf.1_Silent_p.P71P|BIN1_uc010yzg.1_Silent_p.P95P|BIN1_uc002tnu.1_Silent_p.P95P|BIN1_uc002toa.1_Silent_p.P95P|BIN1_uc002tnt.1_Silent_p.P95P|BIN1_uc002tnv.1_Silent_p.P95P|BIN1_uc002tnw.1_Silent_p.P95P|BIN1_uc002tnx.1_Silent_p.P95P|BIN1_uc002tny.1_Silent_p.P95P|BIN1_uc002tnz.1_Silent_p.P95P|BIN1_uc002tob.1_Silent_p.P95P|BIN1_uc002toc.1_Silent_p.P95P	NM_139343	NP_647593	O00499	BIN1_HUMAN	bridging integrator 1 isoform 1	95	BAR.|Interaction with BIN2.				cell proliferation|endocytosis|interspecies interaction between organisms|multicellular organismal development	actin cytoskeleton|nucleus				ovary(2)|central_nervous_system(2)|skin(2)|lung(1)	7	Colorectal(110;0.0831)			BRCA - Breast invasive adenocarcinoma(221;0.073)		CATCCCTGCCGGGCCAATCGG	0.602													33	109					0	0	1	0	0
ERCC3	2071	broad.mit.edu	37	2	128047036	128047036	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:128047036G>A	uc002toh.1	-	6	794	c.699C>T	c.(697-699)TCC>TCT	p.S233S	ERCC3_uc002toe.1_5'UTR|ERCC3_uc002tof.1_Silent_p.S169S|ERCC3_uc002tog.1_Silent_p.S169S|ERCC3_uc010flx.1_5'UTR|ERCC3_uc010yzh.1_RNA	NM_000122	NP_000113	P19447	ERCC3_HUMAN	excision repair cross-complementing rodent	233					cell cycle checkpoint|DNA topological change|hair cell differentiation|induction of apoptosis|interspecies interaction between organisms|mRNA capping|nucleotide-excision repair, DNA damage removal|nucleotide-excision repair, DNA duplex unwinding|nucleotide-excision repair, DNA incision|positive regulation of transcription from RNA polymerase II promoter|positive regulation of viral transcription|protein localization|response to oxidative stress|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase I promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	holo TFIIH complex	3'-5' DNA helicase activity|ATP binding|damaged DNA binding|protein C-terminus binding|protein N-terminus binding|transcription factor binding			ovary(2)|lung(2)|breast(2)|kidney(1)	7	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.073)		CTGTCACTCGGGAAGTGGAGG	0.463			Mis|S			skin basal cell|skin squamous cell|melanoma		Direct_reversal_of_damage|NER	Xeroderma_Pigmentosum				20	35					0	0	1	0	0
LOC440905	440905	broad.mit.edu	37	2	130785953	130785953	+	RNA	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:130785953C>T	uc002tpz.2	-	11		c.2915G>A			LOC440905_uc002tpy.1_RNA	NR_026758				Homo sapiens cDNA FLJ43933 fis, clone TESTI4013685.												0						TGATGGCATTCCAGTACTGGG	0.488													3	5					0	0	1	0	0
POTEE	445582	broad.mit.edu	37	2	131976359	131976359	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:131976359C>T	uc002tsn.2	+	1	436	c.384C>T	c.(382-384)TTC>TTT	p.F128F	PLEKHB2_uc002tsh.2_Intron|POTEE_uc002tsk.2_5'UTR|POTEE_uc002tsl.2_5'UTR	NM_001083538	NP_001077007	Q6S8J3	POTEE_HUMAN	protein expressed in prostate, ovary, testis,	128							ATP binding				0						ACAGCGCCTTCATGGAGCCCA	0.597													14	85					0	0	1	0	0
NCKAP5	344148	broad.mit.edu	37	2	133541955	133541955	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:133541955G>A	uc002ttp.2	-	14	2803	c.2429C>T	c.(2428-2430)TCA>TTA	p.S810L	NCKAP5_uc002ttq.2_Intron	NM_207363	NP_997246	O14513	NCKP5_HUMAN	Nck-associated protein 5 isoform 1	810							protein binding				0						TTTCTGAGGTGAAGACTTGCC	0.468													45	182					0	0	1	0	0
NCKAP5	344148	broad.mit.edu	37	2	133751795	133751795	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:133751795C>T	uc002ttp.2	-	7	733	c.359G>A	c.(358-360)CGA>CAA	p.R120Q	NCKAP5_uc002ttq.2_Missense_Mutation_p.R120Q|NCKAP5_uc002tts.1_Missense_Mutation_p.R95Q	NM_207363	NP_997246	O14513	NCKP5_HUMAN	Nck-associated protein 5 isoform 1	120	Potential.						protein binding				0						CAATAGATTTCGTACTGTTTC	0.348													6	5					0	0	1	0	0
YSK4	80122	broad.mit.edu	37	2	135744773	135744773	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:135744773C>T	uc002tue.1	-	7	1700	c.1669G>A	c.(1669-1671)GAA>AAA	p.E557K	YSK4_uc002tuf.1_Intron|YSK4_uc010fnc.1_Intron|YSK4_uc010fnd.1_Missense_Mutation_p.E444K|YSK4_uc010zbg.1_Intron|YSK4_uc002tuh.3_Missense_Mutation_p.E285K|YSK4_uc002tui.3_Missense_Mutation_p.E574K	NM_025052	NP_079328	Q56UN5	YSK4_HUMAN	Yeast Sps1/Ste20-related kinase 4 isoform 1	557							ATP binding|protein serine/threonine kinase activity			stomach(2)|urinary_tract(1)|ovary(1)|breast(1)	5				BRCA - Breast invasive adenocarcinoma(221;0.112)		ATGGGACCTTCAGTAGAAATC	0.423													20	49					0	0	1	0	0
YSK4	80122	broad.mit.edu	37	2	135745484	135745484	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:135745484C>T	uc002tue.1	-	7	989	c.958G>A	c.(958-960)GAA>AAA	p.E320K	YSK4_uc002tuf.1_Intron|YSK4_uc010fnc.1_Intron|YSK4_uc010fnd.1_Missense_Mutation_p.E207K|YSK4_uc010zbg.1_Intron|YSK4_uc002tuh.3_Missense_Mutation_p.E48K|YSK4_uc002tui.3_Missense_Mutation_p.E337K	NM_025052	NP_079328	Q56UN5	YSK4_HUMAN	Yeast Sps1/Ste20-related kinase 4 isoform 1	320							ATP binding|protein serine/threonine kinase activity			stomach(2)|urinary_tract(1)|ovary(1)|breast(1)	5				BRCA - Breast invasive adenocarcinoma(221;0.112)		TGAGTGATTTCAATTTTGTTA	0.398													7	45					0	0	1	0	0
LCT	3938	broad.mit.edu	37	2	136575403	136575403	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:136575403C>T	uc002tuu.1	-	6	1226	c.1215G>A	c.(1213-1215)GGG>GGA	p.G405G		NM_002299	NP_002290	P09848	LPH_HUMAN	lactase-phlorizin hydrolase preproprotein	405	Extracellular (Potential).|4 X approximate repeats.|2.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|integral to plasma membrane|membrane fraction	cation binding|glycosylceramidase activity|lactase activity			ovary(7)|central_nervous_system(2)|skin(2)|pancreas(1)|lung(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.169)		TCACCCCTCTCCCACCCTCGG	0.622													31	68					0	0	1	0	0
THSD7B	80731	broad.mit.edu	37	2	137852630	137852630	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:137852630C>T	uc002tva.1	+	3	1045	c.1045C>T	c.(1045-1047)CCT>TCT	p.P349S	THSD7B_uc010zbj.1_RNA|THSD7B_uc002tvb.2_Missense_Mutation_p.P239S	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		AAAGGAGTGTCCTGAACTTCT	0.512													12	40					0	0	1	0	0
THSD7B	80731	broad.mit.edu	37	2	137928434	137928434	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:137928434G>A	uc002tva.1	+	6	1556	c.1556G>A	c.(1555-1557)GGG>GAG	p.G519E	THSD7B_uc010zbj.1_Intron|THSD7B_uc002tvb.2_Missense_Mutation_p.G409E	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		GCATCAGAAGGGATCTGTTTC	0.537													22	32					0	0	1	0	0
THSD7B	80731	broad.mit.edu	37	2	137990568	137990568	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:137990568C>T	uc002tva.1	+	8	1922	c.1922C>T	c.(1921-1923)CCT>CTT	p.P641L	THSD7B_uc010zbj.1_Intron|THSD7B_uc002tvb.2_Missense_Mutation_p.P531L	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		CCTTGGGGCCCTTGTTCTGAG	0.522													21	34					0	0	1	0	0
THSD7B	80731	broad.mit.edu	37	2	138373880	138373880	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:138373880C>T	uc002tva.1	+	17	3472	c.3472C>T	c.(3472-3474)CTA>TTA	p.L1158L	THSD7B_uc010zbj.1_Intron	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		CCAGTACAATCTAACAGGTAC	0.423													30	112					0	0	1	0	0
LRP1B	53353	broad.mit.edu	37	2	141122349	141122349	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:141122349C>T	uc002tvj.1	-	72	11984	c.11012G>A	c.(11011-11013)GGA>GAA	p.G3671E		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	3671	Extracellular (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		ACATATATTTCCTCCTTTATT	0.378										TSP Lung(27;0.18)			29	32					0	0	1	0	0
LRP1B	53353	broad.mit.edu	37	2	141208161	141208161	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:141208161C>T	uc002tvj.1	-	63	11005	c.10033G>A	c.(10033-10035)GGA>AGA	p.G3345R		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	3345	Extracellular (Potential).|LDL-receptor class A 21.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TCATCAGATCCATCACCACAG	0.348										TSP Lung(27;0.18)			26	35					0	0	1	0	0
NEB	4703	broad.mit.edu	37	2	152496921	152496921	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:152496921G>A	uc010fnx.2	-	61	8824	c.8633C>T	c.(8632-8634)CCC>CTC	p.P2878L	NEB_uc002txu.2_5'Flank	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	2878	Nebulin 78.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		GCTCTGGTCGGGCAGGCATGT	0.542													65	84					0	0	1	0	0
CACNB4	785	broad.mit.edu	37	2	152739782	152739782	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:152739782G>A	uc002tya.2	-	3	318	c.250C>T	c.(250-252)CAG>TAG	p.Q84*	CACNB4_uc002txy.2_Nonsense_Mutation_p.Q50*|CACNB4_uc002txz.2_Nonsense_Mutation_p.Q66*|CACNB4_uc010fnz.2_Nonsense_Mutation_p.Q84*|CACNB4_uc002tyb.2_Nonsense_Mutation_p.Q50*	NM_000726	NP_000717	O00305	CACB4_HUMAN	calcium channel, voltage-dependent, beta 4	84					axon guidance|membrane depolarization|synaptic transmission	cytosol|internal side of plasma membrane|plasma membrane|synapse|voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(221;0.156)	Verapamil(DB00661)	CTCTCAAGCTGGATAGCTGCT	0.512													33	43					0	0	1	0	0
PLA2R1	22925	broad.mit.edu	37	2	160824138	160824138	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:160824138C>T	uc002ube.1	-	20	3023	c.2816G>A	c.(2815-2817)CGA>CAA	p.R939Q	PLA2R1_uc010zcp.1_Missense_Mutation_p.R939Q|PLA2R1_uc002ubf.2_Missense_Mutation_p.R939Q	NM_007366	NP_031392	Q13018	PLA2R_HUMAN	phospholipase A2 receptor 1 isoform 1 precursor	939	Extracellular (Potential).				endocytosis	extracellular space|integral to plasma membrane	receptor activity|sugar binding			skin(2)|ovary(1)	3						AACCTTTTTTCGCTTACAGAT	0.393													31	43					0	0	1	0	0
TBR1	10716	broad.mit.edu	37	2	162280633	162280633	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:162280633C>T	uc002ubw.1	+	6	2246	c.1944C>T	c.(1942-1944)TCC>TCT	p.S648S	TBR1_uc010foy.2_Silent_p.S361S	NM_006593	NP_006584	Q16650	TBR1_HUMAN	T-box, brain, 1	648						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)	2						CGCCCGTGTCCGAGAGTTCGT	0.632													7	9					0	0	1	0	0
FAP	2191	broad.mit.edu	37	2	163059452	163059452	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:163059452C>T	uc002ucd.2	-	14	1361	c.1153G>A	c.(1153-1155)GAA>AAA	p.E385K	FAP_uc010zct.1_Missense_Mutation_p.E360K|FAP_uc010fpd.2_Intron	NM_004460	NP_004451	Q12884	SEPR_HUMAN	fibroblast activation protein, alpha subunit	385	Extracellular (Potential).				endothelial cell migration|negative regulation of extracellular matrix disassembly|proteolysis	cell junction|integral to membrane|invadopodium membrane|lamellipodium membrane	dipeptidyl-peptidase activity|metalloendopeptidase activity|protein homodimerization activity|serine-type endopeptidase activity			ovary(3)	3						ATAGCATTTTCCTATAAAAAG	0.378													27	48					0	0	1	0	0
KCNH7	90134	broad.mit.edu	37	2	163253327	163253327	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:163253327C>T	uc002uch.1	-	11	2748	c.2536G>A	c.(2536-2538)GAT>AAT	p.D846N		NM_033272	NP_150375	Q9NS40	KCNH7_HUMAN	potassium voltage-gated channel, subfamily H,	846	Cytoplasmic (Potential).|cNMP.				regulation of transcription, DNA-dependent	integral to membrane	protein binding|signal transducer activity			ovary(3)|skin(2)	5					Ibutilide(DB00308)	GGATACATATCCAAAACCTCT	0.388													14	30					0	0	1	0	0
KCNH7	90134	broad.mit.edu	37	2	163302779	163302779	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:163302779C>T	uc002uch.1	-	7	1515	c.1303G>A	c.(1303-1305)GAC>AAC	p.D435N	KCNH7_uc002uci.2_Missense_Mutation_p.D428N	NM_033272	NP_150375	Q9NS40	KCNH7_HUMAN	potassium voltage-gated channel, subfamily H,	435	Extracellular (Potential).				regulation of transcription, DNA-dependent	integral to membrane	protein binding|signal transducer activity			ovary(3)|skin(2)	5					Ibutilide(DB00308)	TCTTCTCTGTCATTGAGGAGG	0.413													10	45					0	0	1	0	0
SCN3A	6328	broad.mit.edu	37	2	165948835	165948835	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:165948835G>A	uc002ucx.2	-	27	5228	c.4736C>T	c.(4735-4737)TCC>TTC	p.S1579F	SCN3A_uc010zcy.1_Missense_Mutation_p.S62F|SCN3A_uc002ucy.2_Missense_Mutation_p.S1530F|SCN3A_uc002ucz.2_Missense_Mutation_p.S1530F	NM_006922	NP_008853	Q9NY46	SCN3A_HUMAN	sodium channel, voltage-gated, type III, alpha	1579	Helical; Name=S2 of repeat IV; (Potential).					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10					Lamotrigine(DB00555)	GTGTCTGAGGGAGACGAGCTT	0.438													19	38					0	0	1	0	0
SCN2A	6326	broad.mit.edu	37	2	166167016	166167016	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:166167016C>T	uc002udc.2	+	7	1171	c.881C>T	c.(880-882)TCC>TTC	p.S294F	SCN2A_uc002udd.2_Missense_Mutation_p.S294F|SCN2A_uc002ude.2_Missense_Mutation_p.S294F	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	294	I.				myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	AATATCACTTCCTTCTTTAAC	0.348													31	31					0	0	1	0	0
SCN2A	6326	broad.mit.edu	37	2	166245943	166245943	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:166245943G>A	uc002udc.2	+	27	5917	c.5627G>A	c.(5626-5628)CGA>CAA	p.R1876Q	SCN2A_uc002udd.2_Missense_Mutation_p.R1876Q|SCN2A_uc002ude.2_Missense_Mutation_p.R1876Q	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	1876					myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	GATGCCCTTCGAATACAGATG	0.483													26	34					0	0	1	0	0
SCN7A	6332	broad.mit.edu	37	2	167284379	167284379	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:167284379C>T	uc002udu.1	-	17	2899	c.2772G>A	c.(2770-2772)AGG>AGA	p.R924R	SCN7A_uc010fpm.1_RNA	NM_002976	NP_002967	Q01118	SCN7A_HUMAN	sodium channel, voltage-gated, type VII, alpha	924					muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			large_intestine(1)	1						AGCAGGTTTTCCTGATGTTCT	0.448													10	20					0	0	1	0	0
SCN7A	6332	broad.mit.edu	37	2	167298131	167298131	+	Silent	SNP	G	A	A	rs72886662	by1000genomes	TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:167298131G>A	uc002udu.1	-	14	2059	c.1932C>T	c.(1930-1932)TTC>TTT	p.F644F	SCN7A_uc010fpm.1_RNA	NM_002976	NP_002967	Q01118	SCN7A_HUMAN	sodium channel, voltage-gated, type VII, alpha	644	Helical; Name=S5 of repeat II; (By similarity).				muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			large_intestine(1)	1						GCTTCATGCCGAATGCAGCAG	0.433													34	26					0	0	1	0	0
LRP2	4036	broad.mit.edu	37	2	170033035	170033035	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:170033035C>T	uc002ues.2	-	54	10670	c.10457G>A	c.(10456-10458)GGA>GAA	p.G3486E		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	3486	Extracellular (Potential).|EGF-like 13.				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	GAACCCTTTTCCTCCTGGCTT	0.517													16	45					0	0	1	0	0
LRP2	4036	broad.mit.edu	37	2	170070203	170070203	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:170070203G>A	uc002ues.2	-	36	6217	c.6004C>T	c.(6004-6006)CCA>TCA	p.P2002S		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	2002	LDL-receptor class B 19.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	CTCAGATTTGGAACATTATCT	0.368													17	63					0	0	1	0	0
MYO3B	140469	broad.mit.edu	37	2	171240224	171240224	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:171240224C>T	uc002ufy.2	+	12	1333	c.1190C>T	c.(1189-1191)TCC>TTC	p.S397F	MYO3B_uc002ufv.2_Missense_Mutation_p.S384F|MYO3B_uc010fqb.1_Missense_Mutation_p.S384F|MYO3B_uc002ufz.2_Missense_Mutation_p.S397F|MYO3B_uc002ufw.2_RNA|MYO3B_uc002ufx.2_RNA|MYO3B_uc002ugb.2_RNA	NM_138995	NP_620482	Q8WXR4	MYO3B_HUMAN	myosin IIIB isoform 2	397	Myosin head-like.				response to stimulus|visual perception	cytoplasm|myosin complex	actin binding|ATP binding|motor activity|protein serine/threonine kinase activity	p.S397_A406del(1)		lung(8)|ovary(6)|skin(4)|central_nervous_system(1)	19						CTTCAGTTTTCCAGACTTTAT	0.433													4	47					0	0	1	0	0
CHRNA1	1134	broad.mit.edu	37	2	175622398	175622398	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:175622398C>T	uc002ujd.2	-	5	393	c.315G>A	c.(313-315)TGG>TGA	p.W105*	uc002uiw.2_Intron|CHRNA1_uc002uje.2_Nonsense_Mutation_p.W80*|CHRNA1_uc002ujf.3_Nonsense_Mutation_p.W80*	NM_001039523	NP_001034612	P02708	ACHA_HUMAN	nicotinic cholinergic receptor alpha 1 isoform a	105	Extracellular.				muscle cell homeostasis|neuromuscular junction development|neuromuscular process|neuromuscular synaptic transmission|neuron homeostasis|regulation of action potential in neuron|skeletal muscle contraction|skeletal muscle tissue growth	cell junction|cell surface|neuromuscular junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity			ovary(2)|central_nervous_system(1)|skin(1)	4						TGTAATCCACCCATTGCTAGA	0.378													14	34					0	0	1	0	0
KIAA1715	80856	broad.mit.edu	37	2	176794787	176794787	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:176794787C>T	uc002ukc.1	-	13	1388	c.1195G>A	c.(1195-1197)GAA>AAA	p.E399K	KIAA1715_uc010zer.1_Missense_Mutation_p.E430K|KIAA1715_uc010fqw.1_Missense_Mutation_p.E465K|KIAA1715_uc010zes.1_Missense_Mutation_p.E401K|KIAA1715_uc002ukd.1_Missense_Mutation_p.E276K|KIAA1715_uc010zet.1_RNA	NM_030650	NP_085153	Q9C0E8	LNP_HUMAN	Lunapark	399	Cytoplasmic (Potential).					integral to membrane	protein binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.0793)			ACTGAGGCTTCCTCATTCTCA	0.433													28	50					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179444336	179444336	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:179444336C>T	uc010zfg.1	-	268	60108	c.59884G>A	c.(59884-59886)GGA>AGA	p.G19962R	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.G13657R|TTN_uc010zfi.1_Missense_Mutation_p.G13590R|TTN_uc010zfj.1_Missense_Mutation_p.G13465R|uc002umv.1_3'UTR	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	20889							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTTCCTTCTCCATTTTCATTC	0.423													42	83					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179473425	179473425	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:179473425C>T	uc010zfg.1	-	223	44833	c.44609G>A	c.(44608-44610)GGA>GAA	p.G14870E	uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.G8565E|TTN_uc010zfi.1_Missense_Mutation_p.G8498E|TTN_uc010zfj.1_Missense_Mutation_p.G8373E	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	15797							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTACTCTTTTCCTTCAATCAG	0.393													8	22					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179528789	179528789	+	Missense_Mutation	SNP	T	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:179528789T>A	uc010zfk.1	-	14	1303	c.755A>T	c.(754-756)AAA>ATA	p.K252I	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron|TTN_uc010fre.1_Intron			Q8WZ42	TITIN_HUMAN	SubName: Full=Titin; Flags: Fragment;	11464							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CACCGACACTTTCTTTTCAGG	0.388													20	43					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179542534	179542534	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:179542534C>T	uc010zfg.1	-	143	30597	c.30373G>A	c.(30373-30375)GAA>AAA	p.E10125K	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.E6786K|TTN_uc010fre.1_Intron|TTN_uc002una.1_RNA|TTN_uc010frf.1_RNA	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	11052							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GGTAGAACTTCCTCTTCCTCA	0.453													63	80					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179567353	179567353	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:179567353G>A	uc010zfg.1	-	104	26753	c.26529C>T	c.(26527-26529)ATC>ATT	p.I8843I	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.I5504I|TTN_uc010fre.1_5'UTR	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	9770							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CACTCACCACGATGTTCTGTA	0.408													29	30					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179599493	179599493	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:179599493G>A	uc010zfg.1	-	48	11650	c.11426C>T	c.(11425-11427)TCA>TTA	p.S3809L	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.S470L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	4736							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGCTTCACATGAGTAACTCCC	0.373													74	86					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179599565	179599565	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:179599565C>T	uc010zfg.1	-	48	11578	c.11354G>A	c.(11353-11355)CGA>CAA	p.R3785Q	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.R446Q	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	4712							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AAAATACATTCGGACTGTGTT	0.418													15	65					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179600488	179600488	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:179600488C>T	uc010zfg.1	-	47	11177	c.10953G>A	c.(10951-10953)GAG>GAA	p.E3651E	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.E312E	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	4578							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ACTGCACAGGCTCTAATTCTT	0.428													17	16					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179612218	179612218	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:179612218G>A	uc002unb.2	-	46	15133	c.14909C>T	c.(14908-14910)TCC>TTC	p.S4970F	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CACACCAATGGAAATGTCAGA	0.403													18	62					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179615810	179615810	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:179615810G>A	uc002unb.2	-	46	11541	c.11317C>T	c.(11317-11319)CCA>TCA	p.P3773S	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGGGCATGTGGATTTTGCACA	0.348													22	85					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179616249	179616249	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:179616249C>T	uc002unb.2	-	46	11102	c.10878G>A	c.(10876-10878)AGG>AGA	p.R3626R	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TATCTTCTCCCCTTTCAACTA	0.368													45	78					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179633551	179633551	+	Missense_Mutation	SNP	A	C	C			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:179633551A>C	uc010zfg.1	-	38	9236	c.9012T>G	c.(9010-9012)AAT>AAG	p.N3004K	TTN_uc010zfh.1_Missense_Mutation_p.N2958K|TTN_uc010zfi.1_Missense_Mutation_p.N2958K|TTN_uc010zfj.1_Missense_Mutation_p.N2958K|TTN_uc002unb.2_Missense_Mutation_p.N3004K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	3004							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTTCCACACCATTCTTTAACC	0.403													29	26					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179641392	179641392	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:179641392C>T	uc010zfg.1	-	28	5423	c.5199G>A	c.(5197-5199)ACG>ACA	p.T1733T	TTN_uc010zfh.1_Silent_p.T1687T|TTN_uc010zfi.1_Silent_p.T1687T|TTN_uc010zfj.1_Silent_p.T1687T|TTN_uc002unb.2_Silent_p.T1733T|uc002unc.1_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	1733							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CCACCACCATCGTTGGGTCAC	0.473													26	22					0	0	1	0	0
CCDC141	285025	broad.mit.edu	37	2	179720250	179720250	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:179720250C>T	uc002unf.1	-	9	1216	c.1159G>A	c.(1159-1161)GAA>AAA	p.E387K		NM_173648	NP_775919	Q6ZP82	CC141_HUMAN	coiled-coil domain containing 141	387	Potential.						protein binding			ovary(7)|pancreas(2)|skin(1)	10			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.0531)|all cancers(119;0.147)			CTAACTTTTTCCATTTTCCTT	0.284													7	34					0	0	1	0	0
CCDC141	285025	broad.mit.edu	37	2	179733993	179733993	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:179733993C>T	uc002unf.1	-	5	577	c.520G>A	c.(520-522)GAG>AAG	p.E174K		NM_173648	NP_775919	Q6ZP82	CC141_HUMAN	coiled-coil domain containing 141	174							protein binding			ovary(7)|pancreas(2)|skin(1)	10			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.0531)|all cancers(119;0.147)			GTTAACTCCTCTGATTCTTTC	0.338													19	36					0	0	1	0	0
ITGA4	3676	broad.mit.edu	37	2	182360118	182360118	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:182360118C>T	uc002unu.2	+	13	2123	c.1360C>T	c.(1360-1362)CGG>TGG	p.R454W		NM_000885	NP_000876	P13612	ITA4_HUMAN	integrin alpha 4 precursor	454	FG-GAP 7.|Extracellular (Potential).				blood coagulation|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response	integrin complex	identical protein binding|receptor activity			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.0593)		Natalizumab(DB00108)	TGGTGCTTTTCGGTCTGATTC	0.333													12	73					0	0	1	0	0
PDE1A	5136	broad.mit.edu	37	2	183070693	183070693	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:183070693C>T	uc002uos.2	-	9	1008	c.924G>A	c.(922-924)TTG>TTA	p.L308L	PDE1A_uc010zfp.1_Silent_p.L204L|PDE1A_uc002uoq.1_Silent_p.L308L|PDE1A_uc010zfq.1_Silent_p.L308L|PDE1A_uc002uor.2_Silent_p.L292L|PDE1A_uc002uou.2_Silent_p.L274L	NM_001003683	NP_001003683	P54750	PDE1A_HUMAN	phosphodiesterase 1A isoform 2	308	Catalytic (By similarity).				activation of phospholipase C activity|nerve growth factor receptor signaling pathway|platelet activation	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(2)|ovary(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.061)			ATAAATTTATCAAGATATTCA	0.353													7	26					0	0	1	0	0
PDE1A	5136	broad.mit.edu	37	2	183104880	183104880	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:183104880G>A	uc002uos.2	-	4	439	c.355C>T	c.(355-357)CGG>TGG	p.R119W	PDE1A_uc010zfp.1_Missense_Mutation_p.R15W|PDE1A_uc002uoq.1_Missense_Mutation_p.R119W|PDE1A_uc010zfq.1_Missense_Mutation_p.R119W|PDE1A_uc002uor.2_Missense_Mutation_p.R103W|PDE1A_uc002uou.2_Missense_Mutation_p.R85W	NM_001003683	NP_001003683	P54750	PDE1A_HUMAN	phosphodiesterase 1A isoform 2	119					activation of phospholipase C activity|nerve growth factor receptor signaling pathway|platelet activation	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(2)|ovary(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.061)			ACAATGCTCCGAAATTTTGGT	0.418													20	63					0	0	1	0	0
ZNF804A	91752	broad.mit.edu	37	2	185798353	185798353	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:185798353G>A	uc002uph.2	+	3	873	c.279G>A	c.(277-279)AGG>AGA	p.R93R		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	93						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						TGAAACAAAGGGAATTTGCTC	0.353													21	19					0	0	1	0	0
ZNF804A	91752	broad.mit.edu	37	2	185800741	185800741	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:185800741G>A	uc002uph.2	+	4	1212	c.618G>A	c.(616-618)GGG>GGA	p.G206G		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	206						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						AAGCCCAGGGGATTCACAGAC	0.423													22	37					0	0	1	0	0
Unknown	0	broad.mit.edu	37	2	186678721	186678721	+	RNA	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:186678721G>A	uc002upm.2	+	2		c.3359G>A			uc010zfu.1_Silent_p.T1257T					Homo sapiens cDNA FLJ44048 fis, clone TESTI4030669.																		CACCAAAGACGATGCCTGAAA	0.428													10	41					0	0	1	0	0
COL5A2	1290	broad.mit.edu	37	2	189916072	189916072	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:189916072C>T	uc002uqk.2	-	42	3180	c.2905G>A	c.(2905-2907)GGG>AGG	p.G969R	COL5A2_uc010frx.2_Missense_Mutation_p.G545R	NM_000393	NP_000384	P05997	CO5A2_HUMAN	alpha 2 type V collagen preproprotein	969					axon guidance|collagen fibril organization|eye morphogenesis|skin development	collagen type V	extracellular matrix structural constituent			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.127)			CCTGGGTCCCCTTTGTCTCCT	0.562													48	56					0	0	1	0	0
COL5A2	1290	broad.mit.edu	37	2	189923601	189923601	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:189923601C>T	uc002uqk.2	-	32	2379	c.2104G>A	c.(2104-2106)GGA>AGA	p.G702R	COL5A2_uc010frx.2_Missense_Mutation_p.G278R	NM_000393	NP_000384	P05997	CO5A2_HUMAN	alpha 2 type V collagen preproprotein	702					axon guidance|collagen fibril organization|eye morphogenesis|skin development	collagen type V	extracellular matrix structural constituent			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.127)			CCAACTGCTCCGGGATCTCCA	0.358													10	13					0	0	1	0	0
STAT4	6775	broad.mit.edu	37	2	192011404	192011404	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:192011404G>A	uc002usm.1	-	3	462	c.208C>T	c.(208-210)CGT>TGT	p.R70C	STAT4_uc010zgm.1_RNA|STAT4_uc010zgn.1_RNA|STAT4_uc010zgo.1_RNA|STAT4_uc002usn.1_Missense_Mutation_p.R70C|STAT4_uc002uso.2_Missense_Mutation_p.R70C|STAT4_uc002usp.3_Missense_Mutation_p.R70C|STAT4_uc010zgl.1_Missense_Mutation_p.R70C	NM_003151	NP_003142	Q14765	STAT4_HUMAN	signal transducer and activator of transcription	70					JAK-STAT cascade	cytoplasm|nucleus	calcium ion binding|protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			breast(3)|skin(2)|lung(1)|ovary(1)|prostate(1)|pancreas(1)	9			OV - Ovarian serous cystadenocarcinoma(117;0.00854)|Epithelial(96;0.0864)|all cancers(119;0.204)			TTGGAAACACGACCTAACTGT	0.338													6	20					0	0	1	0	0
DNAH7	56171	broad.mit.edu	37	2	196602679	196602679	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:196602679C>T	uc002utj.3	-	65	12142	c.12041G>A	c.(12040-12042)CGA>CAA	p.R4014Q	DNAH7_uc002uti.3_Missense_Mutation_p.R497Q	NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	4014					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						TGCTACACCTCGTCCAATCCA	0.438													9	29					0	0	1	0	0
DNAH7	56171	broad.mit.edu	37	2	196729028	196729028	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:196729028C>T	uc002utj.3	-	41	7452	c.7351G>A	c.(7351-7353)GAT>AAT	p.D2451N		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	2451	AAA 4 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						GGGCTGCCATCTGTTTGCTTG	0.463													36	50					0	0	1	0	0
DNAH7	56171	broad.mit.edu	37	2	196801411	196801411	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:196801411C>T	uc002utj.3	-	20	3285	c.3184G>A	c.(3184-3186)GAA>AAA	p.E1062K		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	1062	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						CGTTTCTTTTCCAAATATTCA	0.343													7	47					0	0	1	0	0
HECW2	57520	broad.mit.edu	37	2	197183397	197183397	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:197183397C>T	uc002utm.1	-	9	2400	c.2217G>A	c.(2215-2217)CGG>CGA	p.R739R	HECW2_uc002utl.1_Silent_p.R383R	NM_020760	NP_065811	Q9P2P5	HECW2_HUMAN	HECT, C2 and WW domain containing E3 ubiquitin	739	Interaction with TP73.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm	ubiquitin-protein ligase activity			skin(5)|ovary(5)|lung(4)|pancreas(2)|central_nervous_system(1)|kidney(1)	18						GGCTCCCCCTCCGCTGCCAGA	0.662													10	30					0	0	1	0	0
HECW2	57520	broad.mit.edu	37	2	197194326	197194326	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:197194326G>A	uc002utm.1	-	5	727	c.544C>T	c.(544-546)CGA>TGA	p.R182*	HECW2_uc002utl.1_5'UTR	NM_020760	NP_065811	Q9P2P5	HECW2_HUMAN	HECT, C2 and WW domain containing E3 ubiquitin	182	C2.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm	ubiquitin-protein ligase activity			skin(5)|ovary(5)|lung(4)|pancreas(2)|central_nervous_system(1)|kidney(1)	18						ACAAGTTTTCGAGAATGCAGG	0.413													36	37					0	0	1	0	0
SATB2	23314	broad.mit.edu	37	2	200213697	200213697	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:200213697G>A	uc002uuy.1	-	7	1717	c.900C>T	c.(898-900)CCC>CCT	p.P300P	SATB2_uc010fsq.1_Silent_p.P182P|SATB2_uc002uuz.1_Silent_p.P300P|SATB2_uc002uva.1_Silent_p.P300P|SATB2_uc002uvb.1_Silent_p.P43P	NM_015265	NP_056080	Q9UPW6	SATB2_HUMAN	SATB homeobox 2	300						cytoplasm|nuclear matrix	sequence-specific DNA binding transcription factor activity			ovary(1)	1						GACTAAGCTGGGGAGAAAGAA	0.517													29	62					0	0	1	0	0
CDK15	65061	broad.mit.edu	37	2	202687588	202687588	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:202687588C>T	uc002uyt.2	+	5	554	c.505C>T	c.(505-507)CAC>TAC	p.H169Y	CDK15_uc010ftm.2_Missense_Mutation_p.H34Y|CDK15_uc002uys.2_Missense_Mutation_p.H118Y|CDK15_uc010ftn.1_Missense_Mutation_p.H118Y|CDK15_uc010fto.1_Missense_Mutation_p.H169Y	NM_139158	NP_631897	Q96Q40	CDK15_HUMAN	PFTAIRE protein kinase 2	169	Protein kinase.						ATP binding|cyclin-dependent protein kinase activity|metal ion binding|protein binding			breast(2)|ovary(1)|lung(1)|kidney(1)	5					Adenosine triphosphate(DB00171)	TGACATAATCCACACCAAAGA	0.343													20	102					0	0	1	0	0
ZDBF2	57683	broad.mit.edu	37	2	207172439	207172439	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:207172439G>A	uc002vbp.2	+	5	3437	c.3187G>A	c.(3187-3189)GAA>AAA	p.E1063K		NM_020923	NP_065974	Q9HCK1	ZDBF2_HUMAN	zinc finger, DBF-type containing 2	1063							nucleic acid binding|zinc ion binding			ovary(3)	3						TTTTTTGAAGGAAAAACATGT	0.323													22	24					0	0	1	0	0
MYL1	4632	broad.mit.edu	37	2	211179661	211179661	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:211179661C>T	uc002vec.2	-	1	235	c.106G>A	c.(106-108)GAA>AAA	p.E36K		NM_079420	NP_524144	P05976	MYL1_HUMAN	fast skeletal myosin alkali light chain 1	36					muscle filament sliding|muscle organ development	cytosol|muscle myosin complex|sarcomere	calcium ion binding|structural constituent of muscle			ovary(1)	1				Epithelial(149;0.00573)|Lung(261;0.0422)|LUSC - Lung squamous cell carcinoma(261;0.0444)|all cancers(144;0.057)		TCAATTTTTTCTTCTTTGGGT	0.328													79	102					0	0	1	0	0
ERBB4	2066	broad.mit.edu	37	2	212537890	212537890	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:212537890G>A	uc002veg.1	-	14	1813	c.1715C>T	c.(1714-1716)CCG>CTG	p.P572L	ERBB4_uc002veh.1_Missense_Mutation_p.P572L|ERBB4_uc010zji.1_Missense_Mutation_p.P572L|ERBB4_uc010zjj.1_Missense_Mutation_p.P572L|ERBB4_uc010fut.1_Missense_Mutation_p.P572L	NM_005235	NP_005226	Q15303	ERBB4_HUMAN	v-erb-a erythroblastic leukemia viral oncogene	572	Extracellular (Potential).|Cys-rich.				cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent|transmembrane receptor protein tyrosine kinase signaling pathway	basolateral plasma membrane|cytoplasm|integral to membrane|nucleus	ATP binding|protein binding|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(21)|skin(5)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	33		Renal(323;0.06)|Lung NSC(271;0.197)		UCEC - Uterine corpus endometrioid carcinoma (47;0.214)|Epithelial(149;5.86e-06)|all cancers(144;2.95e-05)|Lung(261;0.00244)|LUSC - Lung squamous cell carcinoma(224;0.00266)		CAGGCTTACCGGTCCATGGCA	0.413										TSP Lung(8;0.080)			36	48					0	0	1	0	0
MIR548F-2	100302154	broad.mit.edu	37	2	213290992	213290992	+	RNA	SNP	A	C	C			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:213290992A>C	hsa-mir-548f-2|MI0006375	-			c.93A>C			ERBB4_uc002veg.1_Intron|ERBB4_uc002veh.1_Intron|ERBB4_uc010zji.1_Intron|ERBB4_uc010zjj.1_Intron|ERBB4_uc010fut.1_Intron																	0						TGCACACTAAAATAttaggtt	0.174													7	18					0	0	1	0	0
FN1	2335	broad.mit.edu	37	2	216279657	216279657	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:216279657A>G	uc002vfa.2	-	13	2110	c.1844T>C	c.(1843-1845)TTT>TCT	p.F615S	FN1_uc002vfb.2_Missense_Mutation_p.F615S|FN1_uc002vfc.2_Missense_Mutation_p.F615S|FN1_uc002vfd.2_Missense_Mutation_p.F615S|FN1_uc002vfe.2_Missense_Mutation_p.F615S|FN1_uc002vff.2_Missense_Mutation_p.F615S|FN1_uc002vfg.2_Missense_Mutation_p.F615S|FN1_uc002vfh.2_Missense_Mutation_p.F615S|FN1_uc002vfi.2_Missense_Mutation_p.F615S|FN1_uc002vfj.2_Missense_Mutation_p.F615S|FN1_uc002vfl.2_Missense_Mutation_p.F615S	NM_212482	NP_997647	P02751	FINC_HUMAN	fibronectin 1 isoform 1 preproprotein	615	Fibronectin type-III 1.				acute-phase response|angiogenesis|leukocyte migration|peptide cross-linking|platelet activation|platelet degranulation|regulation of cell shape|substrate adhesion-dependent cell spreading	ER-Golgi intermediate compartment|fibrinogen complex|platelet alpha granule lumen|proteinaceous extracellular matrix	collagen binding|extracellular matrix structural constituent|heparin binding			central_nervous_system(7)|large_intestine(2)|breast(2)|ovary(1)|pancreas(1)	13		Renal(323;0.127)		Epithelial(149;9.59e-07)|all cancers(144;0.000174)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)	Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	CTCAGTGATAAATACTTCGAC	0.438													23	15					0	0	1	0	0
CXCR2P1	3580	broad.mit.edu	37	2	218925481	218925481	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:218925481G>A	uc002vgx.2	-	1	533	c.240C>T	c.(238-240)ATC>ATT	p.I80I	RUFY4_uc002vgw.2_Intron	NR_002712				Homo sapiens interleukin 8 receptor, beta pseudogene, mRNA (cDNA clone IMAGE:5450999), with apparent retained intron.												0						GCAGCGGCACGATGAAGCCAA	0.527													30	30					0	0	1	0	0
USP37	57695	broad.mit.edu	37	2	219353064	219353064	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:219353064G>A	uc002vie.2	-	15	2006	c.1553C>T	c.(1552-1554)CCT>CTT	p.P518L	USP37_uc010fvs.1_Missense_Mutation_p.P518L|USP37_uc010zkf.1_Missense_Mutation_p.P518L|USP37_uc002vif.2_Missense_Mutation_p.P518L|USP37_uc002vig.2_Missense_Mutation_p.P446L	NM_020935	NP_065986	Q86T82	UBP37_HUMAN	ubiquitin specific peptidase 37	518					ubiquitin-dependent protein catabolic process	nucleus	cysteine-type peptidase activity|ubiquitin thiolesterase activity			skin(3)|ovary(1)|prostate(1)	5		Renal(207;0.0915)		Epithelial(149;1.08e-06)|all cancers(144;0.000197)|LUSC - Lung squamous cell carcinoma(224;0.00375)|Lung(261;0.00487)		AATTGAACGAGGAGGGAGTGG	0.318													40	43					0	0	1	0	0
PRKAG3	53632	broad.mit.edu	37	2	219688974	219688974	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:219688974C>T	uc002vjb.1	-	12	1343	c.1324G>A	c.(1324-1326)GAA>AAA	p.E442K		NM_017431	NP_059127	Q9UGI9	AAKG3_HUMAN	AMP-activated protein kinase, non-catalytic	442	CBS 4.				cell cycle arrest|fatty acid biosynthetic process|insulin receptor signaling pathway|intracellular protein kinase cascade|regulation of fatty acid oxidation	cytosol	AMP-activated protein kinase activity|protein kinase binding			ovary(1)|lung(1)	2		Renal(207;0.0474)		Epithelial(149;4.35e-07)|all cancers(144;8.96e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		TCGATCACTTCCCCCAAGCTC	0.582													15	30					0	0	1	0	0
SPEG	10290	broad.mit.edu	37	2	220336616	220336616	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:220336616C>T	uc010fwg.2	+	14	3742	c.3742C>T	c.(3742-3744)CCT>TCT	p.P1248S		NM_005876	NP_005867	Q15772	SPEG_HUMAN	SPEG complex locus	1248	Ig-like 6.				muscle organ development|negative regulation of cell proliferation	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(9)|ovary(4)|central_nervous_system(1)	14		Renal(207;0.0183)		Epithelial(149;4.5e-10)|all cancers(144;7.93e-08)|Lung(261;0.00639)|LUSC - Lung squamous cell carcinoma(224;0.00829)|READ - Rectum adenocarcinoma(5;0.163)		CTTGGTGTTCCCTGCCGTGGG	0.627													15	48					0	0	1	0	0
SPEG	10290	broad.mit.edu	37	2	220355655	220355655	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:220355655G>A	uc010fwg.2	+	38	9362	c.9362G>A	c.(9361-9363)CGC>CAC	p.R3121H		NM_005876	NP_005867	Q15772	SPEG_HUMAN	SPEG complex locus	3121	Protein kinase 2.				muscle organ development|negative regulation of cell proliferation	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(9)|ovary(4)|central_nervous_system(1)	14		Renal(207;0.0183)		Epithelial(149;4.5e-10)|all cancers(144;7.93e-08)|Lung(261;0.00639)|LUSC - Lung squamous cell carcinoma(224;0.00829)|READ - Rectum adenocarcinoma(5;0.163)		CTTGGCCACCGCACGGGCACG	0.662													7	25					0	0	1	0	0
MOGAT1	116255	broad.mit.edu	37	2	223554030	223554030	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:223554030G>A	uc010fws.1	+	3	368	c.320G>A	c.(319-321)GGG>GAG	p.G107E	MOGAT1_uc010fwt.1_Missense_Mutation_p.G67E	NM_058165	NP_477513	Q96PD6	MOGT1_HUMAN	monoacylglycerol O-acyltransferase 1	107					glycerol metabolic process	endoplasmic reticulum membrane|integral to membrane	2-acylglycerol O-acyltransferase activity			breast(1)	1		Renal(207;0.0183)		Epithelial(121;4.13e-10)|all cancers(144;2.06e-07)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.0105)		TATATATTTGGGTTTCACCCC	0.338													22	15					0	0	1	0	0
KIAA1486	57624	broad.mit.edu	37	2	226447420	226447420	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:226447420C>T	uc002voe.2	+	4	1462	c.1287C>T	c.(1285-1287)TAC>TAT	p.Y429Y	KIAA1486_uc010fxa.1_Intron|KIAA1486_uc002vof.1_Silent_p.Y199Y	NM_020864	NP_065915	Q9P242	K1486_HUMAN	hypothetical protein LOC57624	429	Pro-rich.									ovary(2)|central_nervous_system(1)	3		Renal(207;0.0112)|all_lung(227;0.0477)|Lung NSC(271;0.0644)|all_hematologic(139;0.101)|Esophageal squamous(248;0.129)		Epithelial(121;6.73e-10)|all cancers(144;4.32e-07)|Lung(261;0.0161)|LUSC - Lung squamous cell carcinoma(224;0.0223)		CCCATGGCTACCCTAAAAGTC	0.667													4	12					0	0	1	0	0
COL4A4	1286	broad.mit.edu	37	2	227896978	227896979	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:227896978_227896979CC>TT	uc010zlt.1	-	39	4245_4246	c.3591_3592GG>AA	c.(3589-3594)GTGGGG>GTAAGG	p.G1198R		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	1198	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		CCAGGTGGCCCCACATCATGCA	0.495													18	19					0	0	1	0	0
SPHKAP	80309	broad.mit.edu	37	2	228882152	228882152	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:228882152C>T	uc002vpq.2	-	7	3465	c.3418G>A	c.(3418-3420)GAA>AAA	p.E1140K	SPHKAP_uc002vpp.2_Missense_Mutation_p.E1140K|SPHKAP_uc010zlx.1_Missense_Mutation_p.E1140K	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	1140						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		CCTCTCCCTTCATTTTCCATC	0.532													25	27					0	0	1	0	0
SPHKAP	80309	broad.mit.edu	37	2	228884716	228884716	+	Missense_Mutation	SNP	C	T	T	rs145402025		TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:228884716C>T	uc002vpq.2	-	7	901	c.854G>A	c.(853-855)CGA>CAA	p.R285Q	SPHKAP_uc002vpp.2_Missense_Mutation_p.R285Q|SPHKAP_uc010zlx.1_Missense_Mutation_p.R285Q	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	285						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		TTCTGGAGATCGTTCTGTTTT	0.443													34	135					0	0	1	0	0
SLC16A14	151473	broad.mit.edu	37	2	230923964	230923964	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:230923964C>T	uc002vqd.1	-	2	468	c.105G>A	c.(103-105)ATG>ATA	p.M35I	FBXO36_uc010fxi.1_Intron|SLC16A14_uc002vqe.2_Missense_Mutation_p.M35I|SLC16A14_uc002vqf.2_Missense_Mutation_p.M35I	NM_152527	NP_689740	Q7RTX9	MOT14_HUMAN	solute carrier family 16 (monocarboxylic acid	35	Helical; (Potential).					integral to membrane|plasma membrane	symporter activity			ovary(4)|skin(2)	6		Renal(207;0.025)|all_hematologic(139;0.122)|all_lung(227;0.149)|Acute lymphoblastic leukemia(138;0.164)		Epithelial(121;7.31e-13)|all cancers(144;5.1e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00948)		AGAGCACCATCATCCAAGCCC	0.502													10	53					0	0	1	0	0
SP140L	93349	broad.mit.edu	37	2	231253291	231253291	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:231253291C>T	uc010fxm.1	+	10	893	c.802C>T	c.(802-804)CCT>TCT	p.P268S	SP140L_uc010fxo.1_Missense_Mutation_p.P75S	NM_138402	NP_612411	Q9H930	LY10L_HUMAN	SP140 nuclear body protein-like	268						nucleus	DNA binding|metal ion binding			central_nervous_system(1)	1						GAGAGGCAAACCTGGAACCCA	0.363													7	11					0	0	1	0	0
SP140L	93349	broad.mit.edu	37	2	231256845	231256845	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:231256845C>T	uc010fxm.1	+	12	1099	c.1008C>T	c.(1006-1008)TTC>TTT	p.F336F	SP140L_uc010fxo.1_Silent_p.F108F	NM_138402	NP_612411	Q9H930	LY10L_HUMAN	SP140 nuclear body protein-like	336	SAND.					nucleus	DNA binding|metal ion binding			central_nervous_system(1)	1						GAAAATGGTTCACCCCCATGG	0.527													37	54					0	0	1	0	0
C2orf57	165100	broad.mit.edu	37	2	232458731	232458731	+	Missense_Mutation	SNP	A	C	C			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:232458731A>C	uc002vrz.2	+	1	1120	c.1069A>C	c.(1069-1071)ATC>CTC	p.I357L		NM_152614	NP_689827	Q53QW1	CB057_HUMAN	hypothetical protein LOC165100	357										ovary(1)	1		Renal(207;0.025)|all_hematologic(139;0.0735)|Acute lymphoblastic leukemia(138;0.164)		Epithelial(121;1.33e-11)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(119;0.014)		CCTGCGCACCATCACCCGTGT	0.692													17	44					0	0	1	0	0
ALPP	250	broad.mit.edu	37	2	233243914	233243914	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:233243914G>A	uc002vsq.2	+	3	363	c.198G>A	c.(196-198)ATG>ATA	p.M66I	ALPP_uc002vsr.2_5'Flank	NM_001632	NP_001623	P05187	PPB1_HUMAN	placental alkaline phosphatase preproprotein	66				M -> V (in Ref. 3; AAA51709).		anchored to membrane|cell surface|integral to membrane|plasma membrane	alkaline phosphatase activity|metal ion binding			ovary(1)	1		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;4.45e-22)|Kidney(3;4.42e-11)|KIRC - Kidney renal clear cell carcinoma(3;1.9e-09)|BRCA - Breast invasive adenocarcinoma(100;0.000767)|Lung(119;0.00566)|LUSC - Lung squamous cell carcinoma(224;0.00746)|STAD - Stomach adenocarcinoma(3;0.0181)|GBM - Glioblastoma multiforme(43;0.196)		CTTCAGGGATGGGGGTGTCTA	0.617													33	39					0	0	1	0	0
INPP5D	3635	broad.mit.edu	37	2	233986883	233986883	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:233986883G>A	uc010zmo.1	+	3	418	c.265G>A	c.(265-267)GAA>AAA	p.E89K	INPP5D_uc010zmp.1_Missense_Mutation_p.E89K	NM_001017915	NP_001017915	Q92835	SHIP1_HUMAN	SH2 containing inositol phosphatase isoform a	89	SH2.				apoptosis|blood coagulation|leukocyte migration|T cell receptor signaling pathway	cytosol	inositol-polyphosphate 5-phosphatase activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|SH3 domain binding			ovary(1)|central_nervous_system(1)	2		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0273)|Acute lymphoblastic leukemia(138;0.0328)|Lung NSC(271;0.0843)		Epithelial(121;1.16e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000479)|LUSC - Lung squamous cell carcinoma(224;0.00655)|Lung(119;0.00802)|GBM - Glioblastoma multiforme(43;0.0185)		TTACAAGAAGGAAAACATGGG	0.552													41	52					0	0	1	0	0
INPP5D	3635	broad.mit.edu	37	2	234077950	234077950	+	Splice_Site	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:234077950G>A	uc010zmo.1	+	13	1709	c.1556_splice	c.e13-1	p.G519_splice	INPP5D_uc010zmp.1_Splice_Site_p.G518_splice	NM_001017915	NP_001017915	Q92835	SHIP1_HUMAN	SH2 containing inositol phosphatase isoform a						apoptosis|blood coagulation|leukocyte migration|T cell receptor signaling pathway	cytosol	inositol-polyphosphate 5-phosphatase activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|SH3 domain binding			ovary(1)|central_nervous_system(1)	2		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0273)|Acute lymphoblastic leukemia(138;0.0328)|Lung NSC(271;0.0843)		Epithelial(121;1.16e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000479)|LUSC - Lung squamous cell carcinoma(224;0.00655)|Lung(119;0.00802)|GBM - Glioblastoma multiforme(43;0.0185)		CTTCTTTTTAGGGAACAAGGG	0.488													4	8					0	0	1	0	0
INPP5D	3635	broad.mit.edu	37	2	234112876	234112876	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:234112876C>T	uc010zmo.1	+	25	3233	c.3080C>T	c.(3079-3081)TCC>TTC	p.S1027F	INPP5D_uc010zmp.1_Missense_Mutation_p.S1026F	NM_001017915	NP_001017915	Q92835	SHIP1_HUMAN	SH2 containing inositol phosphatase isoform a	1027	Pro-rich.				apoptosis|blood coagulation|leukocyte migration|T cell receptor signaling pathway	cytosol	inositol-polyphosphate 5-phosphatase activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|SH3 domain binding			ovary(1)|central_nervous_system(1)	2		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0273)|Acute lymphoblastic leukemia(138;0.0328)|Lung NSC(271;0.0843)		Epithelial(121;1.16e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000479)|LUSC - Lung squamous cell carcinoma(224;0.00655)|Lung(119;0.00802)|GBM - Glioblastoma multiforme(43;0.0185)		TCCCTGAGTTCCTTCCCTAAG	0.632													5	17					0	0	1	0	0
INPP5D	3635	broad.mit.edu	37	2	234113017	234113018	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:234113017_234113018CC>TT	uc010zmo.1	+	25	3374_3375	c.3221_3222CC>TT	c.(3220-3222)CCC>CTT	p.P1074L	INPP5D_uc010zmp.1_Missense_Mutation_p.P1073L	NM_001017915	NP_001017915	Q92835	SHIP1_HUMAN	SH2 containing inositol phosphatase isoform a	1074	Pro-rich.				apoptosis|blood coagulation|leukocyte migration|T cell receptor signaling pathway	cytosol	inositol-polyphosphate 5-phosphatase activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|SH3 domain binding			ovary(1)|central_nervous_system(1)	2		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0273)|Acute lymphoblastic leukemia(138;0.0328)|Lung NSC(271;0.0843)		Epithelial(121;1.16e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000479)|LUSC - Lung squamous cell carcinoma(224;0.00655)|Lung(119;0.00802)|GBM - Glioblastoma multiforme(43;0.0185)		GGCGAGGGGCCCGGCAAGCAGG	0.703													7	28					0	0	1	0	0
UGT1A8	54576	broad.mit.edu	37	2	234526798	234526798	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:234526798C>T	uc002vup.2	+	1	508	c.445C>T	c.(445-447)CCT>TCT	p.P149S	UGT1A8_uc010zmv.1_Missense_Mutation_p.P149S	NM_019076	NP_061949	Q9HAW9	UD18_HUMAN	UDP glycosyltransferase 1 family, polypeptide A8	149					drug metabolic process|fatty acid metabolic process|flavone metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	enzyme inhibitor activity|fatty acid binding|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity|steroid binding			ovary(2)	2		Breast(86;0.000766)|all_lung(227;0.00271)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0334)|Lung NSC(271;0.0461)|Lung SC(224;0.128)		Epithelial(121;2.56e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000482)|Lung(119;0.00404)|LUSC - Lung squamous cell carcinoma(224;0.008)		GTTTCTTGATCCTTTTGATGC	0.393													29	125					0	0	1	0	0
UGT1A8	54576	broad.mit.edu	37	2	234526965	234526965	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:234526965G>A	uc002vup.2	+	1	675	c.612G>A	c.(610-612)AAG>AAA	p.K204K	UGT1A8_uc010zmv.1_Silent_p.K204K	NM_019076	NP_061949	Q9HAW9	UD18_HUMAN	UDP glycosyltransferase 1 family, polypeptide A8	204					drug metabolic process|fatty acid metabolic process|flavone metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	enzyme inhibitor activity|fatty acid binding|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity|steroid binding			ovary(2)	2		Breast(86;0.000766)|all_lung(227;0.00271)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0334)|Lung NSC(271;0.0461)|Lung SC(224;0.128)		Epithelial(121;2.56e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000482)|Lung(119;0.00404)|LUSC - Lung squamous cell carcinoma(224;0.008)		TGACTTTCAAGGAGAGAGTAC	0.438													113	149					0	0	1	0	0
UGT1A5	54579	broad.mit.edu	37	2	234676946	234676946	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:234676946G>A	uc002vuw.2	+	4	1168	c.1168G>A	c.(1168-1170)GTG>ATG	p.V390M	UGT1A8_uc010zmv.1_Missense_Mutation_p.V386M|UGT1A8_uc002vup.2_Missense_Mutation_p.V386M|UGT1A10_uc002vuq.3_Missense_Mutation_p.V386M|UGT1A10_uc002vur.2_Missense_Mutation_p.V386M|UGT1A9_uc010zmw.1_Missense_Mutation_p.V386M|UGT1A9_uc002vus.2_Missense_Mutation_p.V386M|UGT1A7_uc010zmx.1_Missense_Mutation_p.V386M|UGT1A7_uc002vut.2_Missense_Mutation_p.V386M|UGT1A6_uc002vuu.2_Missense_Mutation_p.V121M|UGT1A6_uc010zmy.1_Missense_Mutation_p.V388M|UGT1A6_uc002vuv.3_Missense_Mutation_p.V388M|UGT1A5_uc010zmz.1_Missense_Mutation_p.V390M|UGT1A4_uc010zna.1_Missense_Mutation_p.V390M|UGT1A4_uc002vux.2_Missense_Mutation_p.V390M|UGT1A3_uc010znb.1_Missense_Mutation_p.V390M|UGT1A3_uc002vuy.2_Missense_Mutation_p.V390M|UGT1A9_uc002vva.2_RNA|UGT1A1_uc010znc.1_Missense_Mutation_p.V389M|UGT1A1_uc002vvb.2_Missense_Mutation_p.V389M	NM_019078	NP_061951	P35504	UD15_HUMAN	UDP glycosyltransferase 1 family, polypeptide A5	390					xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(1)	1		Breast(86;0.000765)|all_lung(227;0.00267)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0328)|Lung NSC(271;0.0457)|Lung SC(224;0.128)		Epithelial(121;4.51e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000523)|Lung(119;0.00271)|LUSC - Lung squamous cell carcinoma(224;0.00645)		CGTTCCCATGGTGATGATGCC	0.488													28	78					0	0	1	0	0
COL6A3	1293	broad.mit.edu	37	2	238290072	238290072	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:238290072G>A	uc002vwl.2	-	5	1668	c.1383C>T	c.(1381-1383)TTC>TTT	p.F461F	COL6A3_uc002vwo.2_Silent_p.F255F|COL6A3_uc010znj.1_Silent_p.F54F|COL6A3_uc002vwq.2_Silent_p.F255F|COL6A3_uc002vwr.2_Silent_p.F54F|COL6A3_uc010znk.1_Silent_p.F461F	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	461	VWFA 3.|Nonhelical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		GGATGGCATTGAAGTTGGCCA	0.493													15	23					0	0	1	0	0
OR6B3	150681	broad.mit.edu	37	2	240985397	240985397	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:240985397G>A	uc010zoe.1	-	1	93	c.93C>T	c.(91-93)TTC>TTT	p.F31F	PRR21_uc010zod.1_5'Flank	NM_173351	NP_775486	Q8NGW1	OR6B3_HUMAN	olfactory receptor, family 6, subfamily B,	31	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		all_epithelial(40;1.64e-11)|Breast(86;0.000327)|Renal(207;0.00571)|Ovarian(221;0.104)|all_hematologic(139;0.182)|all_lung(227;0.229)|Melanoma(123;0.238)		Epithelial(121;1.05e-29)|all cancers(36;3.52e-28)|OV - Ovarian serous cystadenocarcinoma(60;4.63e-14)|Kidney(56;2.99e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.56e-05)|Lung(119;0.00344)|LUSC - Lung squamous cell carcinoma(224;0.0148)|Colorectal(34;0.019)|COAD - Colon adenocarcinoma(134;0.141)		AGGTGAGCAGGAAGAGGAGGA	0.597													44	40					0	0	1	0	0
KIF1A	547	broad.mit.edu	37	2	241686696	241686696	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr2:241686696G>A	uc002vzy.2	-	27	2863	c.2717C>T	c.(2716-2718)TCG>TTG	p.S906L	KIF1A_uc010fzk.2_Missense_Mutation_p.S1007L|KIF1A_uc002vzz.1_Missense_Mutation_p.S1007L	NM_004321	NP_004312	Q12756	KIF1A_HUMAN	axonal transport of synaptic vesicles	906					anterograde axon cargo transport	cytoplasm|microtubule|nucleus	ATP binding|microtubule motor activity			lung(1)	1		all_epithelial(40;1.35e-15)|Breast(86;2.14e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0295)|all_neural(83;0.0459)|Lung NSC(271;0.0942)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;6.12e-30)|all cancers(36;3.46e-27)|OV - Ovarian serous cystadenocarcinoma(60;1.38e-14)|Kidney(56;5e-09)|KIRC - Kidney renal clear cell carcinoma(57;5e-08)|BRCA - Breast invasive adenocarcinoma(100;5.87e-06)|Lung(119;0.00209)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Colorectal(34;0.0282)|COAD - Colon adenocarcinoma(134;0.176)		AGCAGTTCCCGACTGGCGGAC	0.577													11	19					0	0	1	0	0
SIRPD	128646	broad.mit.edu	37	20	1517811	1517811	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr20:1517811C>T	uc002wfi.2	-	3	611	c.567G>A	c.(565-567)CTG>CTA	p.L189L		NM_178460	NP_848555	Q9H106	SIRPD_HUMAN	signal-regulatory protein delta precursor	189						extracellular region				ovary(1)|kidney(1)|skin(1)	3						CTGTGAGTCCCAGCAGCCGGA	0.617													29	64					0	0	1	0	0
TGM3	7053	broad.mit.edu	37	20	2297713	2297713	+	Splice_Site	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr20:2297713G>A	uc002wfx.3	+	6	767	c.670_splice	c.e6-1	p.I224_splice		NM_003245	NP_003236	Q08188	TGM3_HUMAN	transglutaminase 3 precursor						cell envelope organization|hair follicle morphogenesis|keratinization|peptide cross-linking|protein tetramerization	cytoplasm|extrinsic to internal side of plasma membrane	acyltransferase activity|calcium ion binding|GDP binding|GTP binding|GTPase activity|magnesium ion binding|protein-glutamine gamma-glutamyltransferase activity			large_intestine(4)|ovary(3)|breast(1)|skin(1)	9					L-Glutamine(DB00130)	TTTCTGCCCAGATCAATAGCA	0.547													48	77					0	0	1	0	0
TGM3	7053	broad.mit.edu	37	20	2298097	2298097	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr20:2298097G>A	uc002wfx.3	+	7	1046	c.949G>A	c.(949-951)GGA>AGA	p.G317R		NM_003245	NP_003236	Q08188	TGM3_HUMAN	transglutaminase 3 precursor	317					cell envelope organization|hair follicle morphogenesis|keratinization|peptide cross-linking|protein tetramerization	cytoplasm|extrinsic to internal side of plasma membrane	acyltransferase activity|calcium ion binding|GDP binding|GTP binding|GTPase activity|magnesium ion binding|protein-glutamine gamma-glutamyltransferase activity			large_intestine(4)|ovary(3)|breast(1)|skin(1)	9					L-Glutamine(DB00130)	CGACCCCATGGGAAACCCCCT	0.517													61	120					0	0	1	0	0
NOP56	10528	broad.mit.edu	37	20	2635510	2635510	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr20:2635510C>T	uc002wgh.2	+	5	539	c.486C>T	c.(484-486)AAC>AAT	p.N162N	NOP56_uc010zpy.1_RNA|NOP56_uc002wgi.2_5'UTR|SNORA51_uc002wgk.1_5'Flank|NOP56_uc002wgm.1_5'Flank|SNORD86_uc010gaq.1_5'Flank|SNORD56_uc010gar.2_5'Flank|SNORD57_uc002wgo.1_5'Flank	NM_006392	NP_006383	O00567	NOP56_HUMAN	nucleolar protein 5A	162					rRNA processing	box C/D snoRNP complex|pre-snoRNP complex	protein binding|snoRNA binding			ovary(1)|pancreas(1)	2						TTAATGTGAACCGGGTGGACA	0.502													78	124					0	0	1	0	0
EBF4	57593	broad.mit.edu	37	20	2688609	2688609	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr20:2688609G>A	uc002wgt.3	+	6	687	c.419G>A	c.(418-420)GGG>GAG	p.G140E	EBF4_uc002wgs.3_RNA	NM_001110514	NP_001103984	Q9BQW3	COE4_HUMAN	early B-cell factor 4	144					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|metal ion binding				0						ATCTATGAGGGGCAGGACAAG	0.612													5	4					0	0	1	0	0
PTPRA	5786	broad.mit.edu	37	20	3016261	3016261	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr20:3016261G>A	uc010zqd.1	+	20	2301	c.1984G>A	c.(1984-1986)GGA>AGA	p.G662R	PTPRA_uc002whj.2_Missense_Mutation_p.G651R|PTPRA_uc002whk.2_Missense_Mutation_p.G642R|PTPRA_uc002whl.2_Missense_Mutation_p.G642R|PTPRA_uc002whm.2_Missense_Mutation_p.G418R|PTPRA_uc002whn.2_Missense_Mutation_p.G642R|PTPRA_uc002who.2_Missense_Mutation_p.G314R	NM_002836	NP_002827	P18433	PTPRA_HUMAN	protein tyrosine phosphatase, receptor type, A	651	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 2.				axon guidance|protein phosphorylation	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			upper_aerodigestive_tract(1)	1						GCCATCTGATGGACTGGTGTC	0.542													13	16					0	0	1	0	0
C20orf194	25943	broad.mit.edu	37	20	3355764	3355764	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr20:3355764C>T	uc002wii.2	-	5	469	c.418G>A	c.(418-420)GAA>AAA	p.E140K	C20orf194_uc002wik.2_5'UTR|C20orf194_uc010gay.1_RNA	NM_001009984	NP_001009984	Q5TEA3	CT194_HUMAN	hypothetical protein LOC25943	140											0						GCGGCTTCTTCATCTTCATAC	0.388													56	112					0	0	1	0	0
CHGB	1114	broad.mit.edu	37	20	5904144	5904144	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr20:5904144C>T	uc002wmg.2	+	4	1660	c.1354C>T	c.(1354-1356)CAG>TAG	p.Q452*	CHGB_uc010zqz.1_Nonsense_Mutation_p.Q135*	NM_001819	NP_001810	P05060	SCG1_HUMAN	chromogranin B precursor	452						extracellular region	hormone activity			breast(3)|skin(2)|ovary(1)	6						CCAAGAAAACCAGATGGACAA	0.537													43	99					0	0	1	0	0
PLCB1	23236	broad.mit.edu	37	20	8717764	8717764	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr20:8717764G>A	uc002wnb.2	+	20	2136	c.2133G>A	c.(2131-2133)AAG>AAA	p.K711K	PLCB1_uc010zrb.1_Silent_p.K610K|PLCB1_uc002wna.2_Silent_p.K711K|PLCB1_uc002wnc.1_Silent_p.K610K|PLCB1_uc002wnd.1_Silent_p.K288K	NM_015192	NP_056007	Q9NQ66	PLCB1_HUMAN	phosphoinositide-specific phospholipase C beta 1	711	C2.				activation of meiosis involved in egg activation|CD24 biosynthetic process|cerebral cortex development|G1 phase|G2/M transition of mitotic cell cycle|glutamate signaling pathway|insulin-like growth factor receptor signaling pathway|interleukin-1-mediated signaling pathway|interleukin-12-mediated signaling pathway|interleukin-15-mediated signaling pathway|intracellular signal transduction|lipid catabolic process|memory|muscarinic acetylcholine receptor signaling pathway|negative regulation of monocyte extravasation|negative regulation of transcription, DNA-dependent|phosphatidylinositol metabolic process|positive regulation of acrosome reaction|positive regulation of developmental growth|positive regulation of embryonic development|positive regulation of interleukin-12 production|positive regulation of JNK cascade|positive regulation of myoblast differentiation|positive regulation of transcription, DNA-dependent|regulation of fertilization|regulation of G-protein coupled receptor protein signaling pathway|synaptic transmission	cytosol|nuclear chromatin|nuclear speck	calcium ion binding|calmodulin binding|enzyme binding|GTPase activator activity|phosphatidylinositol phospholipase C activity|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity|signal transducer activity			ovary(4)|breast(3)|upper_aerodigestive_tract(2)|skin(2)|lung(1)	12						CAAGGAGGAAGGCATTTAAGA	0.388													28	31					0	0	1	0	0
PLCB1	23236	broad.mit.edu	37	20	8717784	8717784	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr20:8717784C>T	uc002wnb.2	+	20	2156	c.2153C>T	c.(2152-2154)TCC>TTC	p.S718F	PLCB1_uc010zrb.1_Missense_Mutation_p.S617F|PLCB1_uc002wna.2_Missense_Mutation_p.S718F|PLCB1_uc002wnc.1_Missense_Mutation_p.S617F|PLCB1_uc002wnd.1_Missense_Mutation_p.S295F	NM_015192	NP_056007	Q9NQ66	PLCB1_HUMAN	phosphoinositide-specific phospholipase C beta 1	718	C2.				activation of meiosis involved in egg activation|CD24 biosynthetic process|cerebral cortex development|G1 phase|G2/M transition of mitotic cell cycle|glutamate signaling pathway|insulin-like growth factor receptor signaling pathway|interleukin-1-mediated signaling pathway|interleukin-12-mediated signaling pathway|interleukin-15-mediated signaling pathway|intracellular signal transduction|lipid catabolic process|memory|muscarinic acetylcholine receptor signaling pathway|negative regulation of monocyte extravasation|negative regulation of transcription, DNA-dependent|phosphatidylinositol metabolic process|positive regulation of acrosome reaction|positive regulation of developmental growth|positive regulation of embryonic development|positive regulation of interleukin-12 production|positive regulation of JNK cascade|positive regulation of myoblast differentiation|positive regulation of transcription, DNA-dependent|regulation of fertilization|regulation of G-protein coupled receptor protein signaling pathway|synaptic transmission	cytosol|nuclear chromatin|nuclear speck	calcium ion binding|calmodulin binding|enzyme binding|GTPase activator activity|phosphatidylinositol phospholipase C activity|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity|signal transducer activity			ovary(4)|breast(3)|upper_aerodigestive_tract(2)|skin(2)|lung(1)	12						ACCAAAACATCCCAAGGAAAT	0.398													18	43					0	0	1	0	0
PAK7	57144	broad.mit.edu	37	20	9546766	9546766	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr20:9546766G>A	uc002wnl.2	-	6	1801	c.1256C>T	c.(1255-1257)TCC>TTC	p.S419F	PAK7_uc002wnk.2_Missense_Mutation_p.S419F|PAK7_uc002wnj.2_Missense_Mutation_p.S419F|PAK7_uc010gby.1_Missense_Mutation_p.S419F	NM_020341	NP_065074	Q9P286	PAK7_HUMAN	p21-activated kinase 7	419	Linker.						ATP binding|protein binding|protein serine/threonine kinase activity			lung(11)|skin(5)|central_nervous_system(3)|ovary(2)|large_intestine(1)|stomach(1)	23			COAD - Colon adenocarcinoma(9;0.194)			CTGGTCGGAGGAGGAGCCCCA	0.642													24	43					0	0	1	0	0
ANKRD5	63926	broad.mit.edu	37	20	10025099	10025099	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr20:10025099C>T	uc002wno.2	+	5	997	c.604C>T	c.(604-606)CGA>TGA	p.R202*	uc002wnn.1_Intron|ANKRD5_uc002wnp.2_Nonsense_Mutation_p.R202*|ANKRD5_uc010gbz.2_Nonsense_Mutation_p.R13*	NM_022096	NP_071379	Q9NU02	ANKR5_HUMAN	ankyrin repeat domain protein 5	202	ANK 2.						calcium ion binding			ovary(1)|breast(1)	2						GGAAATAGTTCGAGGCATATT	0.438													54	85					0	0	1	0	0
JAG1	182	broad.mit.edu	37	20	10621503	10621503	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr20:10621503C>T	uc002wnw.2	-	25	3643	c.3127G>A	c.(3127-3129)GAT>AAT	p.D1043N		NM_000214	NP_000205	P78504	JAG1_HUMAN	jagged 1 precursor	1043	Extracellular (Potential).				angiogenesis|cell communication|cell fate determination|endothelial cell differentiation|hemopoiesis|keratinocyte differentiation|myoblast differentiation|Notch receptor processing|Notch signaling pathway|regulation of cell migration|regulation of cell proliferation	extracellular region|integral to plasma membrane	calcium ion binding|growth factor activity|Notch binding|structural molecule activity			lung(3)|ovary(2)|central_nervous_system(2)|breast(1)|pancreas(1)	9						CTGTTTCCATCACGTTTACTA	0.448									Alagille_Syndrome				34	57					0	0	1	0	0
SPTLC3	55304	broad.mit.edu	37	20	13029765	13029765	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr20:13029765G>A	uc002wod.1	+	2	579	c.290G>A	c.(289-291)CGA>CAA	p.R97Q	SPTLC3_uc002woc.2_Missense_Mutation_p.R97K	NM_018327	NP_060797	Q9NUV7	SPTC3_HUMAN	serine palmitoyltransferase, long chain base	97					sphingoid biosynthetic process	integral to membrane|serine C-palmitoyltransferase complex	pyridoxal phosphate binding|serine C-palmitoyltransferase activity|transferase activity, transferring nitrogenous groups				0					Pyridoxal Phosphate(DB00114)	GCTGTGGAAAGAAAAGAACAA	0.428													16	31					0	0	1	0	0
TASP1	55617	broad.mit.edu	37	20	13604142	13604142	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr20:13604142G>A	uc002woi.2	-	4	350	c.233C>T	c.(232-234)GCC>GTC	p.A78V	TASP1_uc010zri.1_RNA|TASP1_uc002woh.2_Intron|TASP1_uc010zrj.1_RNA|TASP1_uc010zrk.1_Missense_Mutation_p.A78V	NM_017714	NP_060184	Q9H6P5	TASP1_HUMAN	taspase 1 precursor	78					asparagine catabolic process via L-aspartate|positive regulation of transcription, DNA-dependent|protein maturation		threonine-type endopeptidase activity				0						AAGAGCACCGGCCTGCAGCTT	0.383													16	26					0	0	1	0	0
BFSP1	631	broad.mit.edu	37	20	17475618	17475618	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr20:17475618G>A	uc002wpo.2	-	8	1138	c.1099C>T	c.(1099-1101)CCC>TCC	p.P367S	BFSP1_uc002wpp.2_Missense_Mutation_p.P242S|BFSP1_uc010zrn.1_Missense_Mutation_p.P228S|BFSP1_uc010zro.1_Missense_Mutation_p.P228S	NM_001195	NP_001186	Q12934	BFSP1_HUMAN	filensin isoform 1	367	Tail.					cytoplasm|intermediate filament|membrane	structural constituent of cytoskeleton|structural constituent of eye lens			central_nervous_system(1)	1						ACATTCTTGGGGAGGGCTTTT	0.408													43	87					0	0	1	0	0
C20orf26	26074	broad.mit.edu	37	20	20071504	20071504	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr20:20071504G>A	uc002wru.2	+	7	659	c.583G>A	c.(583-585)GAT>AAT	p.D195N	C20orf26_uc010gcw.1_Missense_Mutation_p.D149N|C20orf26_uc010zse.1_Missense_Mutation_p.D195N|C20orf26_uc010zsf.1_Missense_Mutation_p.D195N	NM_015585	NP_056400	Q8NHU2	CT026_HUMAN	hypothetical protein LOC26074	195										ovary(3)|pancreas(1)	4				READ - Rectum adenocarcinoma(2;0.171)		AGACCATGACGATCTCATGCC	0.333													49	91					0	0	1	0	0
VSX1	30813	broad.mit.edu	37	20	25056932	25056932	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr20:25056932C>T	uc002wuf.2	-	5	1098	c.1063G>A	c.(1063-1065)GAG>AAG	p.E355K	VSX1_uc002wue.2_Intron|VSX1_uc010gdd.1_Intron|VSX1_uc010gde.1_Intron|VSX1_uc010gdf.1_Intron	NM_014588	NP_055403	Q9NZR4	VSX1_HUMAN	visual system homeobox 1 isoform a	355					response to stimulus|visual perception	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						TGGGGCCCCTCCAGTGCCGTG	0.577													33	36					0	0	1	0	0
C20orf185	359710	broad.mit.edu	37	20	31651470	31651470	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr20:31651470G>A	uc002wym.1	+	6	641	c.641G>A	c.(640-642)GGG>GAG	p.G214E		NM_182658	NP_872599	P59826	LPLC3_HUMAN	antimicrobial peptide RYA3 precursor	214	Leu-rich.				innate immune response	cytoplasm|extracellular region	lipid binding|protein binding			ovary(4)	4						GAGCTCCTGGGGGCTGTGCTG	0.587													26	66					0	0	1	0	0
ITCH	83737	broad.mit.edu	37	20	33000324	33000324	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr20:33000324C>T	uc010geu.1	+	5	408	c.216C>T	c.(214-216)ATC>ATT	p.I72I	ITCH_uc002xak.2_Silent_p.I72I|ITCH_uc010zuj.1_5'UTR	NM_031483	NP_113671	Q96J02	ITCH_HUMAN	itchy homolog E3 ubiquitin protein ligase	72	C2.				apoptosis|entry of virus into host cell|inflammatory response|innate immune response|negative regulation of apoptosis|negative regulation of defense response to virus|negative regulation of JNK cascade|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production|protein K29-linked ubiquitination|protein K48-linked ubiquitination|protein K63-linked ubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|regulation of cell growth|regulation of protein deubiquitination|response to virus	cytosol|nucleus|plasma membrane	CXCR chemokine receptor binding|ribonucleoprotein binding|ubiquitin-protein ligase activity			breast(4)|lung(1)|central_nervous_system(1)	6						CTTTTAGTATCGTTACCCCTG	0.303													12	20					0	0	1	0	0
DLGAP4	22839	broad.mit.edu	37	20	35064522	35064522	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr20:35064522G>A	uc002xff.2	+	4	1445	c.1010G>A	c.(1009-1011)GGC>GAC	p.G337D	DLGAP4_uc010zvp.1_Missense_Mutation_p.G337D	NM_014902	NP_055717	Q9Y2H0	DLGP4_HUMAN	disks large-associated protein 4 isoform a	337					cell-cell signaling	membrane	protein binding			skin(2)|ovary(1)	3	Breast(12;0.0192)	Myeloproliferative disorder(115;0.00878)				GTGCCCGGCGGCGGCGGCGAG	0.701													9	16					0	0	1	0	0
C20orf132	140699	broad.mit.edu	37	20	35748950	35748950	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr20:35748950C>T	uc010zvu.1	-	19	2307	c.2216G>A	c.(2215-2217)GGG>GAG	p.G739E	C20orf132_uc002xgk.2_Missense_Mutation_p.G361E	NM_152503	NP_689716	Q9H579	CT132_HUMAN	hypothetical protein LOC140699 isoform 1	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment											0		Myeloproliferative disorder(115;0.00878)				TTTATCATTCCCTCGGTTAAG	0.433													14	26					0	0	1	0	0
RALGAPB	57148	broad.mit.edu	37	20	37186985	37186985	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr20:37186985C>T	uc002xiw.2	+	23	3677	c.3420C>T	c.(3418-3420)TCC>TCT	p.S1140S	RALGAPB_uc002xix.2_Silent_p.S1136S|RALGAPB_uc002xiy.1_Intron|RALGAPB_uc002xiz.2_Silent_p.S918S	NM_020336	NP_065069	Q86X10	RLGPB_HUMAN	Ral GTPase activating protein, beta subunit	1140					activation of Ral GTPase activity	intracellular	protein heterodimerization activity|Ral GTPase activator activity			pancreas(1)|skin(1)	2						CACTTGATTCCACGATACCTG	0.383													45	105					0	0	1	0	0
ZHX3	23051	broad.mit.edu	37	20	39832651	39832651	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr20:39832651G>A	uc002xjs.1	-	3	1284	c.906C>T	c.(904-906)CCC>CCT	p.P302P	ZHX3_uc002xjq.1_Intron|ZHX3_uc002xjr.1_Silent_p.P302P|ZHX3_uc002xjt.1_Silent_p.P302P|ZHX3_uc002xju.1_Silent_p.P302P|ZHX3_uc002xjv.1_Silent_p.P302P|ZHX3_uc002xjw.1_Silent_p.P302P|ZHX3_uc010ggg.1_Silent_p.P302P	NM_015035	NP_055850	Q9H4I2	ZHX3_HUMAN	zinc fingers and homeoboxes 3	302	Required for homodimerization and interaction with NFYA.				negative regulation of transcription, DNA-dependent	cytoplasm|nucleolus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3		Myeloproliferative disorder(115;0.00425)				TGCTGCTCAGGGGGATCATCA	0.582													30	45					0	0	1	0	0
PTPRT	11122	broad.mit.edu	37	20	40727111	40727111	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr20:40727111C>T	uc002xkg.2	-	27	3980	c.3796G>A	c.(3796-3798)GAT>AAT	p.D1266N	PTPRT_uc010ggj.2_Missense_Mutation_p.D1285N|PTPRT_uc010ggi.2_Missense_Mutation_p.D469N	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	1266	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 2.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				CAGTTGTAATCGAACACCAGC	0.587													32	50					0	0	1	0	0
PTPRT	11122	broad.mit.edu	37	20	41400092	41400092	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr20:41400092C>T	uc002xkg.2	-	5	851	c.667G>A	c.(667-669)GAC>AAC	p.D223N	PTPRT_uc010ggj.2_Missense_Mutation_p.D223N	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	223	Extracellular (Potential).|Ig-like C2-type.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				CAAAGCTTGTCATGCTGAGAC	0.418													62	129					0	0	1	0	0
PTPRT	11122	broad.mit.edu	37	20	41419868	41419868	+	Silent	SNP	G	A	A	rs140340339		TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr20:41419868G>A	uc002xkg.2	-	3	637	c.453C>T	c.(451-453)CTC>CTT	p.L151L	PTPRT_uc010ggj.2_Silent_p.L151L	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	151	Extracellular (Potential).|MAM.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity	p.L151L(1)		skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				TGCTGATGGCGAGCTCTGCCT	0.488													56	86					0	0	1	0	0
SLPI	6590	broad.mit.edu	37	20	43881663	43881663	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr20:43881663G>A	uc002xnm.1	-	3	396	c.374C>T	c.(373-375)TCC>TTC	p.S125F		NM_003064	NP_003055	P03973	SLPI_HUMAN	secretory leukocyte peptidase inhibitor	125	Elastase inhibitory domain.|WAP 2.					extracellular region	serine-type endopeptidase inhibitor activity			ovary(1)	1		Myeloproliferative disorder(115;0.0122)				GGAAACGCAGGATTTCCCACA	0.552													50	72					0	0	1	0	0
RBPJL	11317	broad.mit.edu	37	20	43944827	43944827	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr20:43944827G>A	uc002xns.2	+	10	1093	c.1021G>A	c.(1021-1023)GCC>ACC	p.A341T	RBPJL_uc002xnt.2_Missense_Mutation_p.A341T	NM_014276	NP_055091	Q9UBG7	RBPJL_HUMAN	recombining binding protein L	341					signal transduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		Myeloproliferative disorder(115;0.0122)				CTCCTCCCAGGCCTCTCCCTG	0.527													16	68					0	0	1	0	0
WFDC6	140870	broad.mit.edu	37	20	44168016	44168016	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr20:44168016C>T	uc002xos.1	-	1	119	c.31G>A	c.(31-33)GTA>ATA	p.V11I	SPINLW1_uc010zxc.1_Intron	NM_080827	NP_543017	Q9BQY6	WFDC6_HUMAN	WAP four-disulfide core domain 6 precursor	11						extracellular region	serine-type endopeptidase inhibitor activity				0		Myeloproliferative disorder(115;0.0122)				ATGAATGGTACCAGGATTGGC	0.512													41	58					0	0	1	0	0
SLC12A5	57468	broad.mit.edu	37	20	44664487	44664487	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr20:44664487C>T	uc010zxl.1	+	4	496	c.420C>T	c.(418-420)TTC>TTT	p.F140F	SLC12A5_uc002xra.2_Silent_p.F117F|SLC12A5_uc010zxm.1_RNA|SLC12A5_uc002xrb.2_Silent_p.F117F	NM_001134771	NP_001128243	Q9H2X9	S12A5_HUMAN	solute carrier family 12 (potassium-chloride	140	Helical; (Potential).				potassium ion transport|sodium ion transport	integral to membrane	potassium:chloride symporter activity			ovary(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5		Myeloproliferative disorder(115;0.0122)			Bumetanide(DB00887)|Potassium Chloride(DB00761)	TCATCCTCTTCCTGCGGCTCA	0.612													21	34					0	0	1	0	0
ZNF334	55713	broad.mit.edu	37	20	45130203	45130203	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr20:45130203C>T	uc002xsc.2	-	5	1959	c.1775G>A	c.(1774-1776)CGA>CAA	p.R592Q	ZNF334_uc002xsa.2_Missense_Mutation_p.R615Q|ZNF334_uc002xsb.2_Missense_Mutation_p.R554Q|ZNF334_uc002xsd.2_Missense_Mutation_p.R554Q|ZNF334_uc010ghl.2_Missense_Mutation_p.R591Q	NM_018102	NP_060572	Q9HCZ1	ZN334_HUMAN	zinc finger protein 334 isoform a	592	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)	2		Myeloproliferative disorder(115;0.0122)				AGTGTGAGTTCGCTGATGTTC	0.443													36	82					0	0	1	0	0
ZNF334	55713	broad.mit.edu	37	20	45131165	45131165	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr20:45131165C>T	uc002xsc.2	-	5	997	c.813G>A	c.(811-813)AGG>AGA	p.R271R	ZNF334_uc002xsa.2_Silent_p.R294R|ZNF334_uc002xsb.2_Silent_p.R233R|ZNF334_uc002xsd.2_Silent_p.R233R|ZNF334_uc010ghl.2_Silent_p.R270R	NM_018102	NP_060572	Q9HCZ1	ZN334_HUMAN	zinc finger protein 334 isoform a	271	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)	2		Myeloproliferative disorder(115;0.0122)				GAAAAGTTTTCCTACAATCAC	0.398													33	71					0	0	1	0	0
ZNF334	55713	broad.mit.edu	37	20	45133364	45133364	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr20:45133364G>A	uc002xsc.2	-	3	221	c.37C>T	c.(37-39)CAG>TAG	p.Q13*	ZNF334_uc002xsa.2_Missense_Mutation_p.P18L|ZNF334_uc002xsb.2_5'UTR|ZNF334_uc002xsd.2_5'UTR|ZNF334_uc010ghl.2_Nonsense_Mutation_p.Q12*	NM_018102	NP_060572	Q9HCZ1	ZN334_HUMAN	zinc finger protein 334 isoform a	13	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)	2		Myeloproliferative disorder(115;0.0122)				GTCAGGTCCTGGAATGAAACT	0.433													23	48					0	0	1	0	0
EYA2	2139	broad.mit.edu	37	20	45717915	45717915	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr20:45717915G>A	uc002xsm.2	+	8	1073	c.699G>A	c.(697-699)GCG>GCA	p.A233A	EYA2_uc010ghp.2_Silent_p.A233A|EYA2_uc002xsn.2_Silent_p.A238A|EYA2_uc002xso.2_Silent_p.A233A|EYA2_uc002xsp.2_Silent_p.A233A|EYA2_uc002xsq.2_Silent_p.A233A	NM_005244	NP_005235	O00167	EYA2_HUMAN	eyes absent 2 isoform a	233					DNA repair|histone dephosphorylation|mesodermal cell fate specification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	magnesium ion binding|protein binding|protein tyrosine phosphatase activity			ovary(1)	1		Myeloproliferative disorder(115;0.0241)				CCACACCAGCGAAAGAGGGAG	0.582													25	56					0	0	1	0	0
EYA2	2139	broad.mit.edu	37	20	45811939	45811939	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr20:45811939G>A	uc002xsm.2	+	15	1810	c.1436G>A	c.(1435-1437)GGG>GAG	p.G479E	EYA2_uc010ghp.2_Missense_Mutation_p.G400E|EYA2_uc002xsn.2_Missense_Mutation_p.G484E|EYA2_uc002xso.2_Missense_Mutation_p.G479E|EYA2_uc002xsp.2_Missense_Mutation_p.G479E|EYA2_uc002xsq.2_Missense_Mutation_p.G449E	NM_005244	NP_005235	O00167	EYA2_HUMAN	eyes absent 2 isoform a	479					DNA repair|histone dephosphorylation|mesodermal cell fate specification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	magnesium ion binding|protein binding|protein tyrosine phosphatase activity			ovary(1)	1		Myeloproliferative disorder(115;0.0241)				GTGCGTGCAGGGAAGGAGAGC	0.343													57	95					0	0	1	0	0
NCOA3	8202	broad.mit.edu	37	20	46277839	46277839	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr20:46277839C>T	uc002xtk.2	+	19	3842	c.3637C>T	c.(3637-3639)CAG>TAG	p.Q1213*	NCOA3_uc010ght.1_Nonsense_Mutation_p.Q1208*|NCOA3_uc002xtl.2_Nonsense_Mutation_p.Q1213*|NCOA3_uc002xtm.2_Nonsense_Mutation_p.Q1213*|NCOA3_uc002xtn.2_Nonsense_Mutation_p.Q1213*|NCOA3_uc010zyc.1_Nonsense_Mutation_p.Q1008*	NM_181659	NP_858045	Q9Y6Q9	NCOA3_HUMAN	nuclear receptor coactivator 3 isoform a	1213	Acetyltransferase.				androgen receptor signaling pathway|cellular lipid metabolic process|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleoplasm	androgen receptor binding|histone acetyltransferase activity|ligand-dependent nuclear receptor binding|protein N-terminus binding|signal transducer activity|thyroid hormone receptor binding			ovary(3)|lung(1)|skin(1)	5						GATGCAGCCCCAGgtgagctc	0.264													11	28					0	0	1	0	0
ATP9A	10079	broad.mit.edu	37	20	50221382	50221382	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr20:50221382G>A	uc002xwg.1	-	27	2981	c.2981C>T	c.(2980-2982)TCC>TTC	p.S994F	ATP9A_uc010gih.1_Missense_Mutation_p.S858F|ATP9A_uc002xwf.1_Missense_Mutation_p.S166F	NM_006045	NP_006036	O75110	ATP9A_HUMAN	ATPase, class II, type 9A	994	Helical; (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(4)	4						GAACACCAGGGAGGCGATGTA	0.592													7	21					0	0	1	0	0
SALL4	57167	broad.mit.edu	37	20	50406783	50406783	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr20:50406783C>T	uc002xwh.3	-	2	2340	c.2239G>A	c.(2239-2241)GGC>AGC	p.G747S	SALL4_uc010gii.2_Intron|SALL4_uc002xwi.3_Intron	NM_020436	NP_065169	Q9UJQ4	SALL4_HUMAN	sal-like 4	747					transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						TCTCTGCTGCCCTGGCGCTGC	0.577													18	22					0	0	1	0	0
SALL4	57167	broad.mit.edu	37	20	50408881	50408881	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr20:50408881C>T	uc002xwh.3	-	2	242	c.141G>A	c.(139-141)GTG>GTA	p.V47V	SALL4_uc010gii.2_Silent_p.V47V|SALL4_uc002xwi.3_Intron	NM_020436	NP_065169	Q9UJQ4	SALL4_HUMAN	sal-like 4	47					transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						CTGGGTGGTTCACTGGAGCAC	0.448													26	55					0	0	1	0	0
TSHZ2	128553	broad.mit.edu	37	20	51870346	51870346	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr20:51870346G>A	uc002xwo.2	+	2	1305	c.349G>A	c.(349-351)GAA>AAA	p.E117K		NM_173485	NP_775756	Q9NRE2	TSH2_HUMAN	teashirt zinc finger homeobox 2	117					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|haematopoietic_and_lymphoid_tissue(1)	6			STAD - Stomach adenocarcinoma(23;0.1)			GCTTCCAAACGAAGCACACAA	0.527													25	36					0	0	1	0	0
TFAP2C	7022	broad.mit.edu	37	20	55209215	55209215	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr20:55209215G>A	uc002xya.2	+	5	1056	c.813G>A	c.(811-813)TCG>TCA	p.S271S	TFAP2C_uc010zzi.1_Silent_p.S102S	NM_003222	NP_003213	Q92754	AP2C_HUMAN	transcription factor AP-2 gamma	271					cell-cell signaling|male gonad development|regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1			Colorectal(105;0.229)			GAGCCAAATCGAAAAATGGAG	0.453													27	52					0	0	1	0	0
SPO11	23626	broad.mit.edu	37	20	55910510	55910510	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr20:55910510G>A	uc002xye.2	+	7	726	c.633G>A	c.(631-633)CGG>CGA	p.R211R	SPO11_uc002xyf.2_Silent_p.R173R	NM_012444	NP_036576	Q9Y5K1	SPO11_HUMAN	meiotic recombination protein SPO11 isoform a	211					female gamete generation|reciprocal meiotic recombination	chromosome|nucleus	ATP binding|DNA binding|hydrolase activity			breast(2)|skin(1)	3	Lung NSC(12;0.0066)|all_lung(29;0.0188)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(4;1.73e-14)|Epithelial(14;9.02e-10)|all cancers(14;9.31e-09)			AAGGAATTCGGAGTATCCTTT	0.204								Editing_and_processing_nucleases					6	12					0	0	1	0	0
CTCFL	140690	broad.mit.edu	37	20	56090866	56090866	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr20:56090866G>A	uc010gix.1	-	5	1746	c.1084C>T	c.(1084-1086)CGA>TGA	p.R362*	CTCFL_uc010giw.1_Nonsense_Mutation_p.R362*|CTCFL_uc002xym.2_Nonsense_Mutation_p.R362*|CTCFL_uc010giz.1_5'UTR|CTCFL_uc010giy.1_5'UTR|CTCFL_uc010gja.1_Nonsense_Mutation_p.R362*|CTCFL_uc010gjb.1_Nonsense_Mutation_p.R362*|CTCFL_uc010gjc.1_Nonsense_Mutation_p.R362*|CTCFL_uc010gjd.1_Nonsense_Mutation_p.R362*|CTCFL_uc010gje.2_Nonsense_Mutation_p.R362*|CTCFL_uc010gjf.2_Nonsense_Mutation_p.R157*|CTCFL_uc010gjg.2_Nonsense_Mutation_p.R94*|CTCFL_uc010gjh.1_Intron|CTCFL_uc010gji.1_Nonsense_Mutation_p.R157*|CTCFL_uc010gjj.1_Nonsense_Mutation_p.R362*	NM_080618	NP_542185	Q8NI51	CTCFL_HUMAN	CCCTC-binding factor-like protein	362	C2H2-type 4.				cell cycle|DNA methylation involved in gamete generation|histone methylation|positive regulation of transcription, DNA-dependent|regulation of gene expression by genetic imprinting|regulation of histone H3-K4 methylation|transcription, DNA-dependent	cytoplasm|nucleus	histone binding|sequence-specific DNA binding|transcription regulatory region DNA binding|zinc ion binding	p.R362*(1)		ovary(2)|large_intestine(1)|skin(1)	4	Lung NSC(12;0.00132)|all_lung(29;0.00433)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(13;3.95e-12)|Epithelial(14;3.41e-08)|all cancers(14;2.09e-07)			GTGTGGGATCGGACATGGCGC	0.443													55	99					0	0	1	0	0
PCK1	5105	broad.mit.edu	37	20	56139563	56139563	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr20:56139563G>A	uc002xyn.3	+	8	1375	c.1212G>A	c.(1210-1212)TCG>TCA	p.S404S	PCK1_uc010zzm.1_Silent_p.S87S	NM_002591	NP_002582	P35558	PCKGC_HUMAN	cytosolic phosphoenolpyruvate carboxykinase 1	404	Substrate binding.				gluconeogenesis|glucose homeostasis|glycerol biosynthetic process from pyruvate|response to insulin stimulus	cytosol|nucleus	carboxylic acid binding|GTP binding|magnesium ion binding|manganese ion binding|phosphoenolpyruvate carboxykinase (GTP) activity			skin(1)	1	Lung NSC(12;0.000764)|all_lung(29;0.00264)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(13;9.88e-12)|Epithelial(14;3.41e-08)|all cancers(14;2.13e-07)			ACCCCAACTCGAGGTTCTGCA	0.587													49	81					0	0	1	0	0
LAMA5	3911	broad.mit.edu	37	20	60921782	60921783	+	Silent	DNP	GG	AA	AA			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr20:60921782_60921783GG>AA	uc002ycq.2	-	8	1213_1214	c.1146_1147CC>TT	c.(1144-1149)AGCCTG>AGTTTG	p.382_383SL>SL		NM_005560	NP_005551	O15230	LAMA5_HUMAN	laminin alpha 5 precursor	382_383	Laminin EGF-like 2.				angiogenesis|cell proliferation|cell recognition|cytoskeleton organization|endothelial cell differentiation|focal adhesion assembly|integrin-mediated signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-11 complex	integrin binding			ovary(1)|pancreas(1)|skin(1)	3	Breast(26;1.57e-08)		BRCA - Breast invasive adenocarcinoma(19;4.36e-06)		Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GTGCCATCCAGGCTCTGGCTGG	0.658													8	26					0	0	1	0	0
LAMA5	3911	broad.mit.edu	37	20	60921788	60921788	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr20:60921788G>A	uc002ycq.2	-	8	1208	c.1141C>T	c.(1141-1143)CAG>TAG	p.Q381*		NM_005560	NP_005551	O15230	LAMA5_HUMAN	laminin alpha 5 precursor	381	Laminin EGF-like 2.				angiogenesis|cell proliferation|cell recognition|cytoskeleton organization|endothelial cell differentiation|focal adhesion assembly|integrin-mediated signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-11 complex	integrin binding			ovary(1)|pancreas(1)|skin(1)	3	Breast(26;1.57e-08)		BRCA - Breast invasive adenocarcinoma(19;4.36e-06)		Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	TCCAGGCTCTGGCTGGCGCGG	0.662													7	24					0	0	1	0	0
TPTE	7179	broad.mit.edu	37	21	10998251	10998251	+	RNA	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr21:10998251C>T	uc002yis.1	-	11		c.2002G>A						P56180	TPTE_HUMAN	Homo sapiens putative tyrosine phosphatase mRNA, complete cds.						signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		ACCATCTGTTCCTTCCACTCC	0.378													20	91					0	0	1	0	0
POTED	317754	broad.mit.edu	37	21	15013756	15013756	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr21:15013756G>A	uc002yjb.1	+	11	1676	c.1624G>A	c.(1624-1626)GAA>AAA	p.E542K		NM_174981	NP_778146	Q86YR6	POTED_HUMAN	pote protein	542	Potential.					plasma membrane				ovary(3)|skin(3)	6						GGAACTAGATGAAACAAAACA	0.358													25	18					0	0	1	0	0
TMPRSS15	5651	broad.mit.edu	37	21	19647525	19647525	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr21:19647525C>T	uc002ykw.2	-	24	2924	c.2893G>A	c.(2893-2895)GAT>AAT	p.D965N		NM_002772	NP_002763	P98073	ENTK_HUMAN	enterokinase precursor	965	Extracellular (Potential).|Peptidase S1.				proteolysis	brush border|integral to membrane	scavenger receptor activity|serine-type endopeptidase activity			ovary(5)|upper_aerodigestive_tract(1)|breast(1)|skin(1)	8						TGACAAGAATCTATTCCTCCT	0.353													54	86					0	0	1	0	0
TMPRSS15	5651	broad.mit.edu	37	21	19713772	19713772	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr21:19713772G>A	uc002ykw.2	-	13	1553	c.1522C>T	c.(1522-1524)CCA>TCA	p.P508S		NM_002772	NP_002763	P98073	ENTK_HUMAN	enterokinase precursor	508	Extracellular (Potential).				proteolysis	brush border|integral to membrane	scavenger receptor activity|serine-type endopeptidase activity			ovary(5)|upper_aerodigestive_tract(1)|breast(1)|skin(1)	8						GTTGGTTCTGGATAAAGACTC	0.343													33	52					0	0	1	0	0
TMPRSS15	5651	broad.mit.edu	37	21	19744641	19744641	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr21:19744641C>T	uc002ykw.2	-	6	564	c.533G>A	c.(532-534)GGA>GAA	p.G178E		NM_002772	NP_002763	P98073	ENTK_HUMAN	enterokinase precursor	178	Extracellular (Potential).				proteolysis	brush border|integral to membrane	scavenger receptor activity|serine-type endopeptidase activity			ovary(5)|upper_aerodigestive_tract(1)|breast(1)|skin(1)	8						TGAGACATTTCCTTTAAAAAA	0.328													10	19					0	0	1	0	0
ADAMTS5	11096	broad.mit.edu	37	21	28338243	28338243	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr21:28338243G>A	uc002ymg.2	-	1	1197	c.468C>T	c.(466-468)TTC>TTT	p.F156F		NM_007038	NP_008969	Q9UNA0	ATS5_HUMAN	ADAM metallopeptidase with thrombospondin type 1	156					proteolysis	proteinaceous extracellular matrix	integrin binding|metalloendopeptidase activity|zinc ion binding			upper_aerodigestive_tract(2)|ovary(1)|pancreas(1)	4						GCTTGACCGCGAAGAAGCCGT	0.662													16	19					0	0	1	0	0
CLDN17	26285	broad.mit.edu	37	21	31538558	31538558	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr21:31538558G>A	uc011acv.1	-	1	378	c.378C>T	c.(376-378)TTC>TTT	p.F126F		NM_012131	NP_036263	P56750	CLD17_HUMAN	claudin 17	126	Helical; (Potential).				calcium-independent cell-cell adhesion|tight junction assembly	Golgi apparatus|integral to membrane|tight junction	identical protein binding|structural molecule activity			ovary(2)	2						CCGTCAGGATGAAGAGGACTC	0.512													29	65					0	0	1	0	0
CLDN17	26285	broad.mit.edu	37	21	31538881	31538881	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr21:31538881C>T	uc011acv.1	-	1	55	c.55G>A	c.(55-57)GTG>ATG	p.V19M		NM_012131	NP_036263	P56750	CLD17_HUMAN	claudin 17	19	Helical; (Potential).				calcium-independent cell-cell adhesion|tight junction assembly	Golgi apparatus|integral to membrane|tight junction	identical protein binding|structural molecule activity			ovary(2)	2						AGAGTCCCCACCATGCCAAGG	0.488													13	50					0	0	1	0	0
KRTAP15-1	254950	broad.mit.edu	37	21	31812779	31812779	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr21:31812779C>T	uc002yod.2	+	1	134	c.134C>T	c.(133-135)TCC>TTC	p.S45F		NM_181623	NP_853654	Q3LI76	KR151_HUMAN	keratin associated protein 15-1	45						intermediate filament					0						CAACTGGGCTCCTCTCTCTAC	0.493													37	59					0	0	1	0	0
IFNGR2	3460	broad.mit.edu	37	21	34793892	34793892	+	Silent	SNP	C	T	T	rs142325229	byFrequency	TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr21:34793892C>T	uc002yrp.3	+	3	960	c.312C>T	c.(310-312)GGC>GGT	p.G104G	IFNGR2_uc002yrq.3_Silent_p.G123G|IFNGR2_uc010gma.2_Silent_p.G25G|IFNGR2_uc002yrr.3_Silent_p.G25G	NM_005534	NP_005525	P38484	INGR2_HUMAN	interferon gamma receptor 2 precursor	104	Extracellular (Potential).|Fibronectin type-III 1.				regulation of interferon-gamma-mediated signaling pathway|response to virus	endoplasmic reticulum|integral to plasma membrane	interferon-gamma receptor activity				0					Interferon gamma-1b(DB00033)	CCTCAGCAGGCTTCCCAATGG	0.512													47	71					0	0	1	0	0
ITSN1	6453	broad.mit.edu	37	21	35237568	35237568	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr21:35237568G>C	uc002yta.1	+	32	4272	c.4004G>C	c.(4003-4005)CGC>CCC	p.R1335P	DONSON_uc002ysn.1_Intron|ITSN1_uc002ytb.1_Missense_Mutation_p.R1330P|ITSN1_uc002ytj.2_Missense_Mutation_p.R1330P|ITSN1_uc010gmm.1_RNA	NM_003024	NP_003015	Q15811	ITSN1_HUMAN	intersectin 1 isoform ITSN-l	1335	DH.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|synaptic vesicle endocytosis	cell junction|coated pit|cytosol|lamellipodium|synapse|synaptosome	calcium ion binding|proline-rich region binding|protein complex scaffold|Rho guanyl-nucleotide exchange factor activity			ovary(3)|skin(1)	4						TTCTGCAGCCGCCAGCTCAAC	0.592													9	12					0	0	1	0	0
SIM2	6493	broad.mit.edu	37	21	38103401	38103401	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr21:38103401C>T	uc002yvr.2	+	7	855	c.799C>T	c.(799-801)CAT>TAT	p.H267Y	SIM2_uc002yvq.2_Missense_Mutation_p.H267Y	NM_005069	NP_005060	Q14190	SIM2_HUMAN	single-minded homolog 2 long isoform	267	PAS 2.				cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			central_nervous_system(1)	1						GACCCTATACCATCACGTGCA	0.637													19	42					0	0	1	0	0
DSCAM	1826	broad.mit.edu	37	21	41452168	41452168	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr21:41452168C>T	uc002yyq.1	-	25	4783	c.4331G>A	c.(4330-4332)GGG>GAG	p.G1444E	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	1444	Fibronectin type-III 5.|Extracellular (Potential).				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				ATACCAAGTCCCACATTTGAG	0.483													42	56					0	0	1	0	0
DSCAM	1826	broad.mit.edu	37	21	41465678	41465678	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr21:41465678C>T	uc002yyq.1	-	21	4272	c.3820G>A	c.(3820-3822)GAA>AAA	p.E1274K	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	1274	Fibronectin type-III 4.|Extracellular (Potential).				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				GTGATGATTTCACTGCTGTTG	0.468													8	29					0	0	1	0	0
UMODL1	89766	broad.mit.edu	37	21	43547787	43547787	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr21:43547787C>T	uc002zaf.1	+	20	3536	c.3536C>T	c.(3535-3537)CCT>CTT	p.P1179L	UMODL1_uc002zad.1_Missense_Mutation_p.P1107L|UMODL1_uc002zae.1_Missense_Mutation_p.P1235L|UMODL1_uc002zag.1_Missense_Mutation_p.P1307L|UMODL1_uc002zal.1_Missense_Mutation_p.P129L|UMODL1_uc010gpa.1_RNA	NM_001004416	NP_001004416	Q5DID0	UROL1_HUMAN	uromodulin-like 1 isoform 1 precursor	1179	Extracellular (Potential).|ZP.					cytoplasm|extracellular region|integral to membrane|plasma membrane	calcium ion binding|peptidase inhibitor activity			ovary(2)|skin(1)	3						CTCAGCTGCCCTGTGCCCAAC	0.502													11	18					0	0	1	0	0
TRPM2	7226	broad.mit.edu	37	21	45774555	45774555	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr21:45774555C>T	uc002zet.1	+	3	403	c.190C>T	c.(190-192)CCT>TCT	p.P64S	TRPM2_uc002zeu.1_Missense_Mutation_p.P64S|TRPM2_uc002zew.1_Missense_Mutation_p.P64S|TRPM2_uc010gpt.1_Missense_Mutation_p.P64S	NM_003307	NP_003298	O94759	TRPM2_HUMAN	transient receptor potential cation channel,	64	Cytoplasmic (Potential).					integral to plasma membrane	ADP-ribose diphosphatase activity|calcium channel activity|sodium channel activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3						TTCGTGGATTCCTGAAAACAT	0.453													24	57					0	0	1	0	0
TRPM2	7226	broad.mit.edu	37	21	45795873	45795873	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr21:45795873C>T	uc002zet.1	+	7	1142	c.929C>T	c.(928-930)TCG>TTG	p.S310L	TRPM2_uc002zeu.1_Missense_Mutation_p.S310L|TRPM2_uc002zew.1_Missense_Mutation_p.S310L|TRPM2_uc010gpt.1_Missense_Mutation_p.S310L|TRPM2_uc002zex.1_Missense_Mutation_p.S96L	NM_003307	NP_003298	O94759	TRPM2_HUMAN	transient receptor potential cation channel,	310	Cytoplasmic (Potential).					integral to plasma membrane	ADP-ribose diphosphatase activity|calcium channel activity|sodium channel activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3						AAGTTCATATCGGAGCAGACC	0.577													11	41					0	0	1	0	0
TRPM2	7226	broad.mit.edu	37	21	45815365	45815365	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr21:45815365C>T	uc002zet.1	+	13	2076	c.1863C>T	c.(1861-1863)CCC>CCT	p.P621P	TRPM2_uc002zeu.1_Silent_p.P621P|TRPM2_uc002zew.1_Silent_p.P621P|TRPM2_uc010gpt.1_Silent_p.P621P|TRPM2_uc002zex.1_Silent_p.P407P|TRPM2_uc002zey.1_Silent_p.P134P	NM_003307	NP_003298	O94759	TRPM2_HUMAN	transient receptor potential cation channel,	621	Cytoplasmic (Potential).					integral to plasma membrane	ADP-ribose diphosphatase activity|calcium channel activity|sodium channel activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3						CCATGGACCCCATCCGTGACC	0.567													47	101					0	0	1	0	0
KRTAP12-4	386684	broad.mit.edu	37	21	46074388	46074388	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr21:46074388G>A	uc002zfs.1	-	1	189	c.144C>T	c.(142-144)CCC>CCT	p.P48P	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198698	NP_941971	P60329	KR124_HUMAN	keratin associated protein 12-4	48	15 X 5 AA approximate repeats.|6.					keratin filament				ovary(1)	1						CCCCACACAGGGGCCGGCACA	0.672													15	20					0	0	1	0	0
UBE2G2	7327	broad.mit.edu	37	21	46197277	46197277	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr21:46197277G>A	uc002zfy.2	-	4	256	c.181C>T	c.(181-183)CCA>TCA	p.P61S	UBE2G2_uc002zfx.2_Missense_Mutation_p.P33S	NM_003343	NP_003334	P60604	UB2G2_HUMAN	ubiquitin-conjugating enzyme E2G 2 isoform 1	61					protein K48-linked ubiquitination	cytosol	ATP binding|protein binding|ubiquitin-protein ligase activity			breast(3)|central_nervous_system(1)	4				Colorectal(79;0.0638)		TAATCAAGTGGGAAACTCAGG	0.413													16	62					0	0	1	0	0
MCM3AP	8888	broad.mit.edu	37	21	47660768	47660768	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr21:47660768A>T	uc002zir.1	-	26	5626	c.5590T>A	c.(5590-5592)TGT>AGT	p.C1864S	MCM3APAS_uc002zim.2_RNA|MCM3APAS_uc002zin.2_Silent_p.T63T|MCM3AP_uc002zio.1_Missense_Mutation_p.C359S|MCM3AP_uc002zip.1_Missense_Mutation_p.C605S|MCM3AP_uc002ziq.1_Missense_Mutation_p.C791S|MCM3APAS_uc002zis.1_RNA	NM_003906	NP_003897	O60318	MCM3A_HUMAN	minichromosome maintenance complex component 3	1864					DNA replication|protein import into nucleus	cytosol|nucleus	DNA binding|nucleotide binding			large_intestine(2)|lung(1)|ovary(1)|skin(1)	5	Breast(49;0.112)					CTCGACAAACACTGCGCCAAG	0.522													23	62					0	0	1	0	0
MICAL3	57553	broad.mit.edu	37	22	18300279	18300279	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr22:18300279G>A	uc002zng.3	-	26	5501	c.5148C>T	c.(5146-5148)GGC>GGT	p.G1716G	MICAL3_uc011agl.1_Silent_p.G1632G|MICAL3_uc010gre.1_5'Flank	NM_015241	NP_056056	Q7RTP6	MICA3_HUMAN	microtubule associated monoxygenase, calponin	1716						cytoplasm|cytoskeleton	monooxygenase activity|zinc ion binding				0		all_epithelial(15;0.198)		Lung(27;0.0427)		GCCGGCCCTCGCCTTTGGACT	0.587													19	7					0	0	1	0	0
ZDHHC8	29801	broad.mit.edu	37	22	20130526	20130526	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr22:20130526C>T	uc002zrq.2	+	10	1479	c.1373C>T	c.(1372-1374)CCC>CTC	p.P458L	ZDHHC8_uc002zrr.1_Missense_Mutation_p.P458L|ZDHHC8_uc010gsa.2_Missense_Mutation_p.P264L	NM_013373	NP_037505	Q9ULC8	ZDHC8_HUMAN	zinc finger, DHHC domain containing 8	458	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane	acyltransferase activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2	Colorectal(54;0.0993)					GGGGGGCCCCCCACGCCCCAC	0.697													24	19					0	0	1	0	0
Unknown	0	broad.mit.edu	37	22	20977010	20977010	+	RNA	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr22:20977010G>A	uc002zsv.2	-	5		c.1525C>T								Homo sapiens, clone IMAGE:5171202, mRNA.																		CCAGGGTCGAGAAATTCCATC	0.502													7	7					0	0	1	0	0
PI4KA	5297	broad.mit.edu	37	22	21159334	21159335	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr22:21159334_21159335GG>AA	uc002zsz.3	-	11	1344_1345	c.1113_1114CC>TT	c.(1111-1116)AGCCCC>AGTTCC	p.P372S	PI4KA_uc010gsq.1_Missense_Mutation_p.P430S	NM_058004	NP_477352	P42356	PI4KA_HUMAN	phosphatidylinositol 4-kinase type 3 alpha	372					phosphatidylinositol biosynthetic process|phosphatidylinositol-mediated signaling|synaptic transmission	Golgi-associated vesicle	1-phosphatidylinositol 4-kinase activity|ATP binding|protein binding			lung(2)|upper_aerodigestive_tract(1)|salivary_gland(1)	4	all_cancers(11;7.59e-25)|all_epithelial(7;1.34e-22)|Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0332)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.000536)|Lung(15;0.0108)|Epithelial(17;0.196)			AGTTTGAGGGGGCTCAGCTCAT	0.559													45	33					0	0	1	0	0
SGSM1	129049	broad.mit.edu	37	22	25294019	25294019	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr22:25294019G>A	uc003abg.2	+	20	2425	c.2268G>A	c.(2266-2268)GGG>GGA	p.G756G	SGSM1_uc003abh.2_Silent_p.G695G|SGSM1_uc010guu.1_Silent_p.G701G|SGSM1_uc003abj.2_Silent_p.G640G|SGSM1_uc003abi.1_Silent_p.G676G	NM_001039948	NP_001035037	Q2NKQ1	SGSM1_HUMAN	RUN and TBC1 domain containing 2 isoform 1	756	Rab-GAP TBC.					Golgi apparatus	Rab GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)	5						TCCCCAATGGGAACCTAGTGA	0.537													9	14					0	0	1	0	0
SGSM1	129049	broad.mit.edu	37	22	25294445	25294445	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr22:25294445C>T	uc003abg.2	+	20	2851	c.2694C>T	c.(2692-2694)CTC>CTT	p.L898L	SGSM1_uc003abh.2_Silent_p.L837L|SGSM1_uc010guu.1_Silent_p.L843L|SGSM1_uc003abj.2_Silent_p.L782L|SGSM1_uc003abi.1_Silent_p.L818L	NM_001039948	NP_001035037	Q2NKQ1	SGSM1_HUMAN	RUN and TBC1 domain containing 2 isoform 1	898	Rab-GAP TBC.					Golgi apparatus	Rab GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)	5						TGGAAAGTCTCTTCCCTGCCC	0.582													32	37					0	0	1	0	0
CRYBB2	1415	broad.mit.edu	37	22	25620957	25620957	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr22:25620957G>A	uc003abp.1	+	3	175	c.127G>A	c.(127-129)GAA>AAA	p.E43K		NM_000496	NP_000487	P43320	CRBB2_HUMAN	crystallin, beta B2	43	Beta/gamma crystallin 'Greek key' 1.				response to stimulus|visual perception		structural constituent of eye lens				0						CAACCTGAAGGAAACTGGCGT	0.552													31	16					0	0	1	0	0
SEZ6L	23544	broad.mit.edu	37	22	26688979	26688980	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr22:26688979_26688980GG>AA	uc003acb.2	+	2	858_859	c.702_703GG>AA	c.(700-705)CAGGAG>CAAAAG	p.E235K	SEZ6L_uc003acc.2_Missense_Mutation_p.E235K|SEZ6L_uc011akc.1_Missense_Mutation_p.E235K|SEZ6L_uc003acd.2_Missense_Mutation_p.E235K|SEZ6L_uc011akd.1_Missense_Mutation_p.E235K|SEZ6L_uc003ace.2_Missense_Mutation_p.E235K|SEZ6L_uc003acf.1_Missense_Mutation_p.E8K|SEZ6L_uc010gvc.1_Missense_Mutation_p.E8K	NM_021115	NP_066938	Q9BYH1	SE6L1_HUMAN	seizure related 6 homolog (mouse)-like	235	Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane				ovary(4)|central_nervous_system(1)|pancreas(1)	6						AGGCCCCCCAGGAGGACACCAG	0.569													8	13					0	0	1	0	0
ZNRF3	84133	broad.mit.edu	37	22	29446318	29446318	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr22:29446318C>T	uc003aeg.2	+	8	2014	c.1849C>T	c.(1849-1851)CAG>TAG	p.Q617*	ZNRF3_uc003aeh.1_Nonsense_Mutation_p.Q617*	NM_032173	NP_115549	Q9ULT6	ZNRF3_HUMAN	zinc and ring finger 3	717	Cytoplasmic (Potential).					integral to membrane	zinc ion binding			ovary(1)	1						CTGCGAGCCCCAGCCCTCCCC	0.726													4	5					0	0	1	0	0
MTMR3	8897	broad.mit.edu	37	22	30374518	30374518	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr22:30374518C>T	uc003agv.3	+	4	419	c.91C>T	c.(91-93)CAG>TAG	p.Q31*	MTMR3_uc003agu.3_Nonsense_Mutation_p.Q31*|MTMR3_uc003agw.3_Nonsense_Mutation_p.Q31*	NM_021090	NP_066576	Q13615	MTMR3_HUMAN	myotubularin-related protein 3 isoform c	31					phosphatidylinositol dephosphorylation	cytoplasm|membrane|membrane fraction|nucleus	metal ion binding|phosphatidylinositol-3-phosphatase activity|protein serine/threonine phosphatase activity|protein tyrosine phosphatase activity			breast(3)|ovary(1)|skin(1)	5			OV - Ovarian serous cystadenocarcinoma(5;0.00204)|Epithelial(10;0.06)|all cancers(5;0.107)			TGAGAATCTTCAGGTAATTAT	0.378													27	19					0	0	1	0	0
SEC14L4	284904	broad.mit.edu	37	22	30887692	30887692	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr22:30887692C>T	uc003aid.2	-	11	1049	c.949G>A	c.(949-951)GGG>AGG	p.G317R	SEC14L4_uc011akz.1_Missense_Mutation_p.G317R|SEC14L4_uc003aie.2_Missense_Mutation_p.G302R|SEC14L4_uc003aif.2_Missense_Mutation_p.G263R	NM_174977	NP_777637	Q9UDX3	S14L4_HUMAN	SEC14p-like protein TAP3 isoform a	317	GOLD.					integral to membrane|intracellular	lipid binding|transporter activity			skin(1)	1					Vitamin E(DB00163)	AGGAAAACCCCAAAGCCGATG	0.617													26	25					0	0	1	0	0
PLA2G3	50487	broad.mit.edu	37	22	31534368	31534368	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr22:31534368C>T	uc003aka.2	-	3	805	c.676G>A	c.(676-678)GAC>AAC	p.D226N		NM_015715	NP_056530	Q9NZ20	PA2G3_HUMAN	phospholipase A2, group III precursor	226	Phospholipase A2-like.				cilium morphogenesis|lipid catabolic process|phospholipid metabolic process	centriole|extracellular space|plasma membrane	calcium ion binding|calcium-dependent phospholipase A2 activity				0						GAGATGGAGTCGTGCTGATTC	0.572													10	8					0	0	1	0	0
MPST	4357	broad.mit.edu	37	22	37420676	37420676	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr22:37420676C>T	uc003aqj.2	+	3	832	c.420C>T	c.(418-420)CTC>CTT	p.L140L	MPST_uc003aqi.1_Silent_p.L140L|MPST_uc003aqm.2_Silent_p.L140L|MPST_uc011amu.1_Silent_p.L160L|MPST_uc003aql.2_Silent_p.L140L|MPST_uc003aqn.2_Silent_p.L140L|MPST_uc003aqo.2_Silent_p.L140L	NM_001130517	NP_001123989	P25325	THTM_HUMAN	mercaptopyruvate sulfurtransferase isoform 2	140	Rhodanese 1.				cyanate catabolic process|response to toxin		3-mercaptopyruvate sulfurtransferase activity|thiosulfate sulfurtransferase activity				0						GCCAGAACCTCCCGCTCAGCT	0.667													12	2					0	0	1	0	0
IL2RB	3560	broad.mit.edu	37	22	37524184	37524184	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr22:37524184G>A	uc003aqv.1	-	10	1739	c.1608C>T	c.(1606-1608)TAC>TAT	p.Y536Y		NM_000878	NP_000869	P14784	IL2RB_HUMAN	interleukin 2 receptor beta precursor	536	Cytoplasmic (Potential).			Y->F: Partial loss of interaction with SHB; when associated with F-418.	interspecies interaction between organisms|positive regulation of survival gene product expression|protein complex assembly	external side of plasma membrane|integral to plasma membrane	interleukin-2 receptor activity				0					Aldesleukin(DB00041)|Basiliximab(DB00074)|Daclizumab(DB00111)|Denileukin diftitox(DB00004)	GGAGGGACAAGTAGGCATCAG	0.637													13	7					0	0	1	0	0
CARD10	29775	broad.mit.edu	37	22	37891816	37891816	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr22:37891816G>A	uc003asx.1	-	14	2257	c.2254C>T	c.(2254-2256)CCC>TCC	p.P752S	CARD10_uc003ast.1_RNA|CARD10_uc003asv.1_5'Flank|CARD10_uc011ank.1_Missense_Mutation_p.P70S|CARD10_uc003asw.1_Missense_Mutation_p.P466S|CARD10_uc003asy.1_Missense_Mutation_p.P752S	NM_014550	NP_055365	Q9BWT7	CAR10_HUMAN	caspase recruitment domain protein 10	752					activation of NF-kappaB-inducing kinase activity|protein complex assembly|regulation of apoptosis	CBM complex	receptor signaling complex scaffold activity			upper_aerodigestive_tract(1)|lung(1)|breast(1)|ovary(1)|prostate(1)|kidney(1)	6	Melanoma(58;0.0574)					AGAGTGAGGGGGTCAACCCGG	0.642													8	14					0	0	1	0	0
PLA2G6	8398	broad.mit.edu	37	22	38565283	38565283	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr22:38565283G>A	uc003auy.1	-	2	287	c.151C>T	c.(151-153)CCC>TCC	p.P51S	PLA2G6_uc003auz.1_Missense_Mutation_p.P51S|PLA2G6_uc003ava.1_Missense_Mutation_p.P51S|PLA2G6_uc003avb.2_Missense_Mutation_p.P51S|PLA2G6_uc010gxk.1_RNA|PLA2G6_uc011ano.1_Missense_Mutation_p.P51S	NM_003560	NP_003551	O60733	PA2G6_HUMAN	phospholipase A2, group VI isoform a	51					cardiolipin biosynthetic process|cell death|lipid catabolic process	centrosome|membrane				ovary(1)	1	Melanoma(58;0.045)				Quinacrine(DB01103)	GTGCGGTTGGGAGTGTTCTGG	0.577													14	13					0	0	1	0	0
NPTXR	23467	broad.mit.edu	37	22	39222572	39222572	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr22:39222572C>T	uc003awk.2	-	3	1185	c.1031G>A	c.(1030-1032)GGG>GAG	p.G344E		NM_014293	NP_055108	O95502	NPTXR_HUMAN	neuronal pentraxin receptor	344	Pentaxin.|Extracellular (Potential).					integral to membrane	metal ion binding			central_nervous_system(2)|skin(1)	3	Melanoma(58;0.04)					GTTGGCCTGCCCGGGCACTGA	0.662													31	30					0	0	1	0	0
TNRC6B	23112	broad.mit.edu	37	22	40662665	40662665	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr22:40662665C>T	uc011aor.1	+	5	2642	c.2431C>T	c.(2431-2433)CGA>TGA	p.R811*	TNRC6B_uc003aym.2_Intron|TNRC6B_uc003ayn.3_Nonsense_Mutation_p.R811*|TNRC6B_uc003ayo.2_Nonsense_Mutation_p.R615*	NM_001162501	NP_001155973	Q9UPQ9	TNR6B_HUMAN	trinucleotide repeat containing 6B isoform 1	811					gene silencing by RNA|regulation of translation	cytoplasmic mRNA processing body	nucleotide binding|RNA binding				0						TGAGACGGGCCGACAGCCCAA	0.572													34	25					0	0	1	0	0
EP300	2033	broad.mit.edu	37	22	41572350	41572350	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr22:41572350C>T	uc003azl.3	+	30	5274	c.4879C>T	c.(4879-4881)CGG>TGG	p.R1627W		NM_001429	NP_001420	Q09472	EP300_HUMAN	E1A binding protein p300	1627	Binding region for E1A adenovirus.				apoptosis|cell cycle|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|histone H4 acetylation|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of androgen receptor signaling pathway|response to estrogen stimulus|response to hypoxia	centrosome|histone acetyltransferase complex	androgen receptor binding|beta-catenin binding|DNA binding|histone acetyltransferase activity|RNA polymerase II activating transcription factor binding|transcription coactivator activity|zinc ion binding	p.R1627W(1)		haematopoietic_and_lymphoid_tissue(22)|large_intestine(13)|breast(9)|central_nervous_system(5)|upper_aerodigestive_tract(4)|pancreas(4)|lung(3)|ovary(2)|stomach(1)|skin(1)	64						GATGGATGGTCGGGATGCGTT	0.577			T| N|F|Mis|O	MLL|RUNXBP2	colorectal|breast|pancreatic|AML|ALL|DLBCL				Rubinstein-Taybi_syndrome				43	34					0	0	1	0	0
EFCAB6	64800	broad.mit.edu	37	22	43950960	43950960	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr22:43950960G>A	uc003bdy.1	-	27	3652	c.3437C>T	c.(3436-3438)GCT>GTT	p.A1146V	EFCAB6_uc003bdz.1_Missense_Mutation_p.A994V|EFCAB6_uc010gzi.1_Missense_Mutation_p.A994V|EFCAB6_uc010gzj.1_Missense_Mutation_p.A372V	NM_022785	NP_073622	Q5THR3	EFCB6_HUMAN	CAP-binding protein complex interacting protein	1146					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	calcium ion binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	7		Ovarian(80;0.0247)|all_neural(38;0.025)				CATTTTCTCAGCCCACTCATC	0.537													18	15					0	0	1	0	0
PLXNB2	23654	broad.mit.edu	37	22	50728360	50728360	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr22:50728360G>A	uc003bkv.3	-	3	760	c.654C>T	c.(652-654)TTC>TTT	p.F218F		NM_012401	NP_036533	O15031	PLXB2_HUMAN	plexin B2 precursor	218	Extracellular (Potential).|Sema.				regulation of small GTPase mediated signal transduction	integral to membrane|intracellular	GTPase activator activity|protein binding|receptor activity			ovary(4)|central_nervous_system(1)|skin(1)	6		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		AGGCCGCCACGAACTGCTGTG	0.632													16	17					0	0	1	0	0
CNTN6	27255	broad.mit.edu	37	3	1443211	1443211	+	Silent	SNP	T	G	G			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:1443211T>G	uc003boz.2	+	21	3066	c.2799T>G	c.(2797-2799)TCT>TCG	p.S933S	CNTN6_uc011asj.1_Silent_p.S861S|CNTN6_uc003bpa.2_Silent_p.S933S	NM_014461	NP_055276	Q9UQ52	CNTN6_HUMAN	contactin 6 precursor	933	Fibronectin type-III 4.				axon guidance|cell adhesion|central nervous system development|Notch signaling pathway	anchored to membrane|plasma membrane				skin(3)|lung(2)|breast(2)|pancreas(1)	8		all_cancers(2;0.000164)|all_epithelial(2;0.107)		Epithelial(13;0.000233)|all cancers(10;0.0013)|OV - Ovarian serous cystadenocarcinoma(96;0.0139)		AAAATGAGTCTGAAGTTTTGG	0.363													11	11					0	0	1	0	0
CNTN4	152330	broad.mit.edu	37	3	2928874	2928874	+	Silent	SNP	G	A	A	rs141461698	by1000genomes	TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:2928874G>A	uc003bpc.2	+	9	1127	c.906G>A	c.(904-906)GGG>GGA	p.G302G	CNTN4_uc003bpb.1_5'UTR|CNTN4_uc003bpd.1_Silent_p.G302G	NM_175607	NP_783200	Q8IWV2	CNTN4_HUMAN	contactin 4 isoform a precursor	302	Ig-like C2-type 3.				axon guidance|axonal fasciculation|brain development|negative regulation of neuron differentiation|neuron cell-cell adhesion|regulation of synaptic plasticity	anchored to membrane|axon|extracellular region|plasma membrane	protein binding			large_intestine(2)|ovary(2)|lung(1)|central_nervous_system(1)|pancreas(1)	7		Ovarian(110;0.156)		Epithelial(13;0.000695)|all cancers(10;0.0047)|OV - Ovarian serous cystadenocarcinoma(96;0.01)		ATTCCAGAGGGAAAAATGTAG	0.373													14	26					0	0	1	0	0
CNTN4	152330	broad.mit.edu	37	3	2942391	2942391	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:2942391A>T	uc003bpc.2	+	10	1184	c.963A>T	c.(961-963)AAA>AAT	p.K321N	CNTN4_uc003bpb.1_5'UTR|CNTN4_uc003bpd.1_Missense_Mutation_p.K321N|CNTN4_uc003bpe.2_5'UTR|CNTN4_uc003bpf.2_5'UTR	NM_175607	NP_783200	Q8IWV2	CNTN4_HUMAN	contactin 4 isoform a precursor	321	Ig-like C2-type 4.				axon guidance|axonal fasciculation|brain development|negative regulation of neuron differentiation|neuron cell-cell adhesion|regulation of synaptic plasticity	anchored to membrane|axon|extracellular region|plasma membrane	protein binding			large_intestine(2)|ovary(2)|lung(1)|central_nervous_system(1)|pancreas(1)	7		Ovarian(110;0.156)		Epithelial(13;0.000695)|all cancers(10;0.0047)|OV - Ovarian serous cystadenocarcinoma(96;0.01)		GGATTCAAAAAATAAATGATA	0.353													28	54					0	0	1	0	0
CNTN4	152330	broad.mit.edu	37	3	3067886	3067886	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:3067886C>T	uc003bpc.2	+	14	1808	c.1587C>T	c.(1585-1587)ATC>ATT	p.I529I	CNTN4_uc003bpb.1_Silent_p.I201I|CNTN4_uc003bpd.1_Silent_p.I529I|CNTN4_uc003bpe.2_Silent_p.I201I|CNTN4_uc003bpf.2_Silent_p.I201I	NM_175607	NP_783200	Q8IWV2	CNTN4_HUMAN	contactin 4 isoform a precursor	529	Ig-like C2-type 6.				axon guidance|axonal fasciculation|brain development|negative regulation of neuron differentiation|neuron cell-cell adhesion|regulation of synaptic plasticity	anchored to membrane|axon|extracellular region|plasma membrane	protein binding			large_intestine(2)|ovary(2)|lung(1)|central_nervous_system(1)|pancreas(1)	7		Ovarian(110;0.156)		Epithelial(13;0.000695)|all cancers(10;0.0047)|OV - Ovarian serous cystadenocarcinoma(96;0.01)		CGCTAGACATCGTGTTTACTT	0.438													22	32					0	0	1	0	0
LRRN1	57633	broad.mit.edu	37	3	3888447	3888447	+	Missense_Mutation	SNP	G	A	A	rs147112564		TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:3888447G>A	uc003bpt.3	+	2	2883	c.2122G>A	c.(2122-2124)GAC>AAC	p.D708N	SUMF1_uc003bps.1_Intron	NM_020873	NP_065924	Q6UXK5	LRRN1_HUMAN	leucine rich repeat neuronal 1 precursor	708	Cytoplasmic (Potential).					integral to membrane				central_nervous_system(1)	1				Epithelial(13;0.000886)|all cancers(10;0.0032)|OV - Ovarian serous cystadenocarcinoma(96;0.00608)|STAD - Stomach adenocarcinoma(44;0.0617)		AACCCAGGTCGACACATCCAG	0.443													6	21					0	0	1	0	0
ITPR1	3708	broad.mit.edu	37	3	4738879	4738879	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:4738879G>A	uc003bqa.2	+	34	4651	c.4303G>A	c.(4303-4305)GAG>AAG	p.E1435K	ITPR1_uc010hca.1_Missense_Mutation_p.E1420K|ITPR1_uc011asu.1_Intron|ITPR1_uc003bqc.2_Missense_Mutation_p.E366K	NM_001099952	NP_001093422	Q14643	ITPR1_HUMAN	inositol 1,4,5-triphosphate receptor, type 1	1444	Cytoplasmic (Potential).				activation of phospholipase C activity|cell death|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	endoplasmic reticulum membrane|integral to membrane|platelet dense granule membrane|platelet dense tubular network membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|intracellular ligand-gated calcium channel activity|phosphatidylinositol binding|protein binding			lung(7)|breast(5)|ovary(4)|large_intestine(1)|liver(1)|skin(1)|kidney(1)|pancreas(1)	21				Epithelial(13;0.0199)|OV - Ovarian serous cystadenocarcinoma(96;0.0361)|all cancers(10;0.0982)		TGTGGATACAGAGGTGGAAAT	0.388													6	11					0	0	1	0	0
GRM7	2917	broad.mit.edu	37	3	7340486	7340486	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:7340486G>A	uc003bqm.2	+	3	1126	c.852G>A	c.(850-852)GTG>GTA	p.V284V	GRM7_uc011ata.1_RNA|GRM7_uc011atb.1_RNA|GRM7_uc010hcf.2_RNA|GRM7_uc011atc.1_RNA|GRM7_uc010hcg.2_Silent_p.V284V|GRM7_uc003bql.2_Silent_p.V284V|GRM7_uc003bqn.1_5'UTR	NM_000844	NP_000835	Q14831	GRM7_HUMAN	glutamate receptor, metabotropic 7 isoform a	284	Extracellular (Potential).				negative regulation of adenylate cyclase activity|negative regulation of cAMP biosynthetic process|negative regulation of glutamate secretion|sensory perception of smell|sensory perception of sound|synaptic transmission	asymmetric synapse|axon|cell cortex|dendritic shaft|integral to plasma membrane|postsynaptic membrane|presynaptic active zone	adenylate cyclase inhibitor activity|calcium ion binding|glutamate binding|group III metabotropic glutamate receptor activity|PDZ domain binding|serine binding			ovary(4)|lung(3)	7					L-Glutamic Acid(DB00142)	GGGCCGTCGTGATTTTTGCCA	0.453													20	38					0	0	1	0	0
C3orf32	51066	broad.mit.edu	37	3	8675568	8675568	+	Silent	SNP	G	A	A	rs143511291	byFrequency	TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:8675568G>A	uc003bqu.2	-	4	303	c.57C>T	c.(55-57)CTC>CTT	p.L19L	C3orf32_uc003bqz.2_Silent_p.L19L|C3orf32_uc003bqt.2_Intron|C3orf32_uc011atg.1_Intron|C3orf32_uc003bqv.2_Intron|C3orf32_uc003bqw.2_RNA|C3orf32_uc003bqx.2_Intron|C3orf32_uc003bqy.2_Silent_p.L19L	NM_015931	NP_057015	Q9Y2M2	CC032_HUMAN	hypothetical protein LOC51066	19										skin(1)	1						ACGTGCAGGCGAGAAACTGAG	0.637													8	18					0	0	1	0	0
LHFPL4	375323	broad.mit.edu	37	3	9547721	9547721	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:9547721G>A	uc003bry.2	-	3	859	c.573C>T	c.(571-573)TCC>TCT	p.S191S		NM_198560	NP_940962	Q7Z7J7	LHPL4_HUMAN	lipoma HMGIC fusion partner-like 4	191	Helical; (Potential).					integral to membrane				ovary(2)|skin(1)	3	Medulloblastoma(99;0.227)					AGGCGAGGAAGGAGAGGATGA	0.632													45	65					0	0	1	0	0
CRELD1	78987	broad.mit.edu	37	3	9984768	9984768	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:9984768C>T	uc003bug.2	+	9	943	c.825C>T	c.(823-825)GCC>GCT	p.A275A	CIDEC_uc003bto.2_Intron|CRELD1_uc003buf.2_Silent_p.A275A|CRELD1_uc003buh.2_Silent_p.A275A|CRELD1_uc003bui.2_Silent_p.A275A|CRELD1_uc003buj.2_RNA	NM_001077415	NP_001070883	Q96HD1	CREL1_HUMAN	cysteine-rich with EGF-like domains 1 isoform 3	275	FU 2.|Extracellular (Potential).				cardiac septum development|endocardial cushion development	integral to membrane	calcium ion binding			ovary(1)	1						CAGACTGTGCCAAGGCCTGCC	0.627													30	66					0	0	1	0	0
SLC6A1	6529	broad.mit.edu	37	3	11059544	11059544	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:11059544C>T	uc010hdq.2	+	4	665	c.254C>T	c.(253-255)CCC>CTC	p.P85L		NM_003042	NP_003033	P30531	SC6A1_HUMAN	solute carrier family 6 (neurotransmitter	85	Helical; Name=2; (Potential).				neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity			ovary(1)|skin(1)	2		Ovarian(110;0.0392)		OV - Ovarian serous cystadenocarcinoma(96;0.00099)	Cocaine(DB00907)|Tiagabine(DB00906)	TTCCTGATCCCCTATTTCCTG	0.602													39	83					0	0	1	0	0
IQSEC1	9922	broad.mit.edu	37	3	12977616	12977616	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:12977616G>A	uc003bxt.2	-	3	951	c.942C>T	c.(940-942)CCC>CCT	p.P314P	IQSEC1_uc003bxu.3_Silent_p.P192P|IQSEC1_uc011auw.1_Silent_p.P300P	NM_014869	NP_055684	Q6DN90	IQEC1_HUMAN	IQ motif and Sec7 domain 1 isoform b	314					regulation of ARF protein signal transduction	cytoplasm|nucleus	ARF guanyl-nucleotide exchange factor activity			ovary(1)	1						GGGGCAGAGGGGGCGACAGCT	0.687													30	52					0	0	1	0	0
GRIP2	80852	broad.mit.edu	37	3	14561731	14561731	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:14561731C>T	uc011avi.1	-	10	1207	c.1207G>A	c.(1207-1209)GAA>AAA	p.E403K	GRIP2_uc011avh.1_5'UTR	NM_001080423	NP_001073892	Q9C0E4	GRIP2_HUMAN	glutamate receptor interacting protein 2	306	PDZ 3.				synaptic transmission	cytosol|plasma membrane	protein binding			pancreas(1)	1						GAGCAGTGTTCCATGCTGGTG	0.647													15	27					0	0	1	0	0
C3orf20	84077	broad.mit.edu	37	3	14799168	14799168	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:14799168C>T	uc003byy.2	+	13	2635	c.2231C>T	c.(2230-2232)TCC>TTC	p.S744F	C3orf20_uc003byz.2_Missense_Mutation_p.S622F|C3orf20_uc003bza.2_Missense_Mutation_p.S622F|C3orf20_uc003bzb.1_Missense_Mutation_p.S245F|C3orf20_uc011avj.1_Missense_Mutation_p.S71F	NM_032137	NP_115513	Q8ND61	CC020_HUMAN	hypothetical protein LOC84077	744						cytoplasm|integral to membrane				ovary(3)|skin(1)	4						GGCCGTGGCTCCCCCTGCATC	0.632													7	18					0	0	1	0	0
FGD5	152273	broad.mit.edu	37	3	14862279	14862279	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:14862279G>A	uc003bzc.2	+	1	1811	c.1701G>A	c.(1699-1701)GAG>GAA	p.E567E	FGD5_uc011avk.1_Silent_p.E567E	NM_152536	NP_689749	Q6ZNL6	FGD5_HUMAN	FYVE, RhoGEF and PH domain containing 5	567					actin cytoskeleton organization|filopodium assembly|regulation of Cdc42 GTPase activity|regulation of cell shape	cytoskeleton|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(3)|kidney(1)|pancreas(1)	5						AGGAGCCTGAGGGGTCAGGGT	0.552													8	24					0	0	1	0	0
FGD5	152273	broad.mit.edu	37	3	14939016	14939016	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:14939016G>A	uc003bzc.2	+	5	2859	c.2749G>A	c.(2749-2751)GAT>AAT	p.D917N	FGD5_uc011avk.1_Missense_Mutation_p.D917N|FGD5_uc003bzd.2_5'UTR	NM_152536	NP_689749	Q6ZNL6	FGD5_HUMAN	FYVE, RhoGEF and PH domain containing 5	917	DH.				actin cytoskeleton organization|filopodium assembly|regulation of Cdc42 GTPase activity|regulation of cell shape	cytoskeleton|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(3)|kidney(1)|pancreas(1)	5						GGTGTTTCAGGATTTCCATGG	0.562													4	6					0	0	1	0	0
DCLK3	85443	broad.mit.edu	37	3	36779778	36779778	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:36779778G>A	uc003cgi.2	-	2	864	c.373C>T	c.(373-375)CTT>TTT	p.L125F		NM_033403	NP_208382	Q9C098	DCLK3_HUMAN	doublecortin-like kinase 3	125						cytoplasm|nucleus	ATP binding|protein serine/threonine kinase activity			lung(3)|large_intestine(2)|breast(1)|skin(1)|ovary(1)|kidney(1)	9						TCCACCCCAAGATGCTTCTCT	0.572													68	132					0	0	1	0	0
TRANK1	9881	broad.mit.edu	37	3	36884144	36884144	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:36884144C>T	uc003cgj.2	-	8	3769	c.3467G>A	c.(3466-3468)GGA>GAA	p.G1156E		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	1706	TPR 3.				DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						GTAGTAATCTCCCTGTGCAAT	0.498													13	29					0	0	1	0	0
LRRFIP2	9209	broad.mit.edu	37	3	37163158	37163158	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:37163158A>T	uc003cgp.2	-	6	676	c.253T>A	c.(253-255)TCC>ACC	p.S85T	LRRFIP2_uc011ayf.1_Missense_Mutation_p.S68T|LRRFIP2_uc003cgr.2_Intron|LRRFIP2_uc003cgs.3_Intron|LRRFIP2_uc003cgt.3_Intron	NM_006309	NP_006300	Q9Y608	LRRF2_HUMAN	leucine rich repeat (in FLII) interacting	85	DVL3-binding.				Wnt receptor signaling pathway		LRR domain binding			ovary(1)	1						GACCGGTGGGAATACCTGGCC	0.413													33	66					0	0	1	0	0
SLC22A14	9389	broad.mit.edu	37	3	38354490	38354490	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:38354490G>A	uc010hhc.1	+	6	987	c.945G>A	c.(943-945)TGG>TGA	p.W315*	SLC22A14_uc003cib.2_Nonsense_Mutation_p.W315*|SLC22A14_uc011ayo.1_RNA	NM_004803	NP_004794	Q9Y267	S22AE_HUMAN	organic cation transporter like 4	315	Helical; (Potential).					integral to plasma membrane	organic cation transmembrane transporter activity				0				KIRC - Kidney renal clear cell carcinoma(284;0.0554)|Kidney(284;0.0696)		GGCCACGCAGGATTCTCCCGG	0.602													7	7					0	0	1	0	0
SLC22A14	9389	broad.mit.edu	37	3	38357943	38357943	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:38357943C>T	uc010hhc.1	+	10	1703	c.1661C>T	c.(1660-1662)TCC>TTC	p.S554F	SLC22A14_uc003cib.2_Missense_Mutation_p.S554F|SLC22A14_uc011ayo.1_RNA	NM_004803	NP_004794	Q9Y267	S22AE_HUMAN	organic cation transporter like 4	554	Helical; (Potential).					integral to plasma membrane	organic cation transmembrane transporter activity				0				KIRC - Kidney renal clear cell carcinoma(284;0.0554)|Kidney(284;0.0696)		GTGGCCTTTTCCCTCTCCTCC	0.612													23	31					0	0	1	0	0
SCN5A	6331	broad.mit.edu	37	3	38601666	38601667	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:38601666_38601667CC>TT	uc003cio.2	-	23	4410_4411	c.4216_4217GG>AA	c.(4216-4218)GGG>AAG	p.G1406K	SCN5A_uc003cin.2_Missense_Mutation_p.G1405K|SCN5A_uc003cil.3_Missense_Mutation_p.G1406K|SCN5A_uc010hhi.2_Missense_Mutation_p.G1406K|SCN5A_uc010hhk.2_Missense_Mutation_p.G1405K|SCN5A_uc011ayr.1_Missense_Mutation_p.G1352K|SCN5A_uc010hhj.1_Missense_Mutation_p.G1016K	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	1406			G -> R (in BRS1).		blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	GTACCCGGCCCCCACGTTGTCA	0.525													9	11					0	0	1	0	0
SCN5A	6331	broad.mit.edu	37	3	38646284	38646284	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:38646284C>T	uc003cio.2	-	11	1648	c.1454G>A	c.(1453-1455)GGA>GAA	p.G485E	SCN5A_uc003cin.2_Missense_Mutation_p.G485E|SCN5A_uc003cil.3_Missense_Mutation_p.G485E|SCN5A_uc010hhi.2_Missense_Mutation_p.G485E|SCN5A_uc010hhk.2_Missense_Mutation_p.G485E|SCN5A_uc011ayr.1_Missense_Mutation_p.G485E|SCN5A_uc010hhj.1_Missense_Mutation_p.G96E	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	485					blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	CTCCTCAGTTCCTGAAGACAT	0.542													10	32					0	0	1	0	0
SCN10A	6336	broad.mit.edu	37	3	38798531	38798531	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:38798531G>A	uc003ciq.2	-	8	1070	c.1070C>T	c.(1069-1071)TCC>TTC	p.S357F		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	357	I.				sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	GCGTTCCCAGGAATCCTGTGT	0.527													9	34					0	0	1	0	0
SCN11A	11280	broad.mit.edu	37	3	38949462	38949462	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:38949462G>A	uc011ays.1	-	10	1650	c.1451C>T	c.(1450-1452)TCT>TTT	p.S484F		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	484					response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	ATCTTCATCAGAATCTGACCC	0.393													27	59					0	0	1	0	0
KBTBD5	131377	broad.mit.edu	37	3	42732406	42732406	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:42732406C>T	uc003clv.1	+	5	1763	c.1663C>T	c.(1663-1665)CTG>TTG	p.L555L		NM_152393	NP_689606	Q2TBA0	KBTB5_HUMAN	kelch repeat and BTB (POZ) domain containing 5	555	Kelch 4.									ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.214)		CCTGGTCAGCCTGGTGGGTAC	0.602													23	25					0	0	1	0	0
SNRK	54861	broad.mit.edu	37	3	43389845	43389845	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:43389845C>T	uc003cms.3	+	7	2426	c.2094C>T	c.(2092-2094)GTC>GTT	p.V698V	SNRK_uc003cmt.3_Silent_p.V698V|SNRK_uc010hik.2_Silent_p.V698V|SNRK_uc011azr.1_Silent_p.V492V	NM_017719	NP_060189	Q9NRH2	SNRK_HUMAN	SNF related kinase	698					myeloid cell differentiation	nucleus	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			ovary(3)|stomach(1)|breast(1)|skin(1)	6				KIRC - Kidney renal clear cell carcinoma(284;0.0636)|Kidney(284;0.0792)		CAGGGCAGGTCCCTGCAGTGG	0.458													25	62					0	0	1	0	0
SLC6A20	54716	broad.mit.edu	37	3	45817382	45817382	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:45817382C>T	uc011bai.1	-	4	577	c.453G>A	c.(451-453)AGG>AGA	p.R151R	SLC6A20_uc011baj.1_Silent_p.R151R	NM_020208	NP_064593	Q9NP91	S6A20_HUMAN	solute carrier family 6, member 20 isoform 1	151	Extracellular (Potential).				cellular nitrogen compound metabolic process|glycine transport|proline transport	apical plasma membrane|integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;0.01)|KIRC - Kidney renal clear cell carcinoma(197;0.0225)|Kidney(197;0.0267)		TGAGGGTTTTCCTGTACCAGA	0.607													53	107					0	0	1	0	0
CCR2	729230	broad.mit.edu	37	3	46399826	46399826	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:46399826G>A	uc003cpn.3	+	2	1293	c.808G>A	c.(808-810)GAA>AAA	p.E270K	CCR2_uc003cpm.3_Missense_Mutation_p.E270K	NM_001123041	NP_001116513	P41597	CCR2_HUMAN	chemokine (C-C motif) receptor 2 isoform A	270	Extracellular (Potential).				astrocyte cell migration|blood vessel remodeling|cellular defense response|chemokine-mediated signaling pathway|dendritic cell chemotaxis|elevation of cytosolic calcium ion concentration|immune response|inflammatory response|interspecies interaction between organisms|JAK-STAT cascade|monocyte extravasation|negative regulation of adenylate cyclase activity|negative regulation of angiogenesis|negative regulation of eosinophil degranulation|negative regulation of type 2 immune response|positive regulation of alpha-beta T cell proliferation|positive regulation of immune complex clearance by monocytes and macrophages|positive regulation of inflammatory response|positive regulation of interferon-gamma production|positive regulation of interleukin-2 production|positive regulation of monocyte chemotaxis|positive regulation of T cell chemotaxis|positive regulation of T cell extravasation|positive regulation of T-helper 1 type immune response|positive regulation of tumor necrosis factor biosynthetic process|regulation of vascular endothelial growth factor production|T-helper 17 cell chemotaxis	cytosol|dendrite|integral to plasma membrane|perikaryon|perinuclear region of cytoplasm|soluble fraction	C-C chemokine receptor activity|CCR2 chemokine receptor binding|protein homodimerization activity			lung(1)|breast(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.00114)|KIRC - Kidney renal clear cell carcinoma(197;0.0174)|Kidney(197;0.0206)		CACCTTCCAGGAATTCTTCGG	0.473													41	93					0	0	1	0	0
CCR5	1234	broad.mit.edu	37	3	46414563	46414563	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:46414563A>T	uc003cpo.3	+	3	292	c.170A>T	c.(169-171)AAC>ATC	p.N57I	CCR5_uc010hjd.2_Missense_Mutation_p.N57I	NM_001100168	NP_001093638	P51681	CCR5_HUMAN	chemokine (C-C motif) receptor 5	57	Helical; Name=1; (Potential).				cell-cell signaling|cellular defense response|dendritic cell chemotaxis|elevation of cytosolic calcium ion concentration|entry into host cell|immune response|inflammatory response|initiation of viral infection	endosome|external side of plasma membrane|integral to plasma membrane	actin binding|C-C chemokine receptor activity|coreceptor activity|phosphatidylinositol phospholipase C activity			lung(4)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6				BRCA - Breast invasive adenocarcinoma(193;0.00112)|KIRC - Kidney renal clear cell carcinoma(197;0.017)|Kidney(197;0.02)	Maraviroc(DB04835)	ATCCTGATAAACTGCAAAAGG	0.502													64	140					0	0	1	0	0
LRRC2	79442	broad.mit.edu	37	3	46571458	46571458	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:46571458G>A	uc010hji.2	-	6	1074	c.710C>T	c.(709-711)TCG>TTG	p.S237L	LRRC2_uc003cpu.3_Missense_Mutation_p.S237L	NM_024512	NP_078788	Q9BYS8	LRRC2_HUMAN	leucine rich repeat containing 2	237										ovary(1)	1		Ovarian(412;0.0563)		OV - Ovarian serous cystadenocarcinoma(275;6.37e-05)|BRCA - Breast invasive adenocarcinoma(193;0.00133)|KIRC - Kidney renal clear cell carcinoma(197;0.0214)|Kidney(197;0.0254)		CTGCAAATTCGACATCCGCAG	0.398													18	24					0	0	1	0	0
PLXNB1	5364	broad.mit.edu	37	3	48461503	48461503	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:48461503G>A	uc003csw.2	-	11	2462	c.2192C>T	c.(2191-2193)TCC>TTC	p.S731F	PLXNB1_uc003csu.2_Intron|PLXNB1_uc003csx.2_Missense_Mutation_p.S731F|PLXNB1_uc010hjx.1_Intron	NM_002673	NP_002664	O43157	PLXB1_HUMAN	plexin B1 precursor	731	Extracellular (Potential).|Pro-rich.				axon guidance|cell migration|intracellular signal transduction|regulation of cell shape|regulation of cytoskeleton organization|regulation of small GTPase mediated signal transduction|semaphorin-plexin signaling pathway	extracellular region|integral to plasma membrane|intracellular|semaphorin receptor complex	GTPase activator activity|semaphorin receptor activity|semaphorin receptor binding			ovary(2)|pancreas(1)|breast(1)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		GCTGAGCAGGGAAGGACTAGC	0.677													14	31					0	0	1	0	0
COL7A1	1294	broad.mit.edu	37	3	48616711	48616711	+	Splice_Site	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:48616711C>T	uc003ctz.2	-	61	5309	c.5308_splice	c.e61-1	p.G1770_splice	MIR711_hsa-mir-711|MI0012488_5'Flank	NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor						cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		CCCGGTCACCCTGTGGAAAAT	0.602													15	51					0	0	1	0	0
CCDC36	339834	broad.mit.edu	37	3	49274001	49274001	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:49274001G>A	uc003cwk.2	+	5	464	c.77G>A	c.(76-78)TGG>TAG	p.W26*	CCDC36_uc003cwl.3_Nonsense_Mutation_p.W26*|CCDC36_uc011bck.1_Nonsense_Mutation_p.W26*|CCDC36_uc010hkt.2_RNA	NM_178173	NP_835467	Q8IYA8	CCD36_HUMAN	coiled-coil domain containing 36	26										ovary(1)|kidney(1)	2				BRCA - Breast invasive adenocarcinoma(193;9.11e-05)|Kidney(197;0.00248)|KIRC - Kidney renal clear cell carcinoma(197;0.00262)		TCATCCAACTGGAATAATAAT	0.358													16	26					0	0	1	0	0
SLC38A3	10991	broad.mit.edu	37	3	50252883	50252883	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:50252883G>A	uc003cyn.3	+	5	506	c.365G>A	c.(364-366)GGG>GAG	p.G122E	SLC38A3_uc011bdl.1_Intron|SLC38A3_uc011bdm.1_Missense_Mutation_p.G53E	NM_006841	NP_006832	Q99624	S38A3_HUMAN	solute carrier family 38, member 3	122	Helical; (Potential).				cellular nitrogen compound metabolic process|sodium ion transport	integral to plasma membrane	antiporter activity|L-alanine transmembrane transporter activity|L-asparagine transmembrane transporter activity|L-glutamine transmembrane transporter activity|L-histidine transmembrane transporter activity|symporter activity			breast(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000275)|KIRC - Kidney renal clear cell carcinoma(197;0.00548)|Kidney(197;0.00615)	L-Asparagine(DB00174)|L-Glutamine(DB00130)|L-Histidine(DB00117)	AAGTCCTCAGGGGTCGTGGGT	0.582													23	65					0	0	1	0	0
DOCK3	1795	broad.mit.edu	37	3	51251600	51251600	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:51251600C>T	uc011bds.1	+	14	1197	c.1174C>T	c.(1174-1176)CGG>TGG	p.R392W		NM_004947	NP_004938	Q8IZD9	DOCK3_HUMAN	dedicator of cytokinesis 3	392						cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00449)|Kidney(197;0.00518)		GGAACAGATTCGGAGAGAAAA	0.398													16	16					0	0	1	0	0
DOCK3	1795	broad.mit.edu	37	3	51297694	51297694	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:51297694C>T	uc011bds.1	+	23	2315	c.2292C>T	c.(2290-2292)TTC>TTT	p.F764F		NM_004947	NP_004938	Q8IZD9	DOCK3_HUMAN	dedicator of cytokinesis 3	764						cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00449)|Kidney(197;0.00518)		AAGAACTTTTCCAGTCCATCC	0.473													7	20					0	0	1	0	0
DOCK3	1795	broad.mit.edu	37	3	51399305	51399305	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:51399305G>A	uc011bds.1	+	48	5045	c.5022G>A	c.(5020-5022)ATG>ATA	p.M1674I		NM_004947	NP_004938	Q8IZD9	DOCK3_HUMAN	dedicator of cytokinesis 3	1674						cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00449)|Kidney(197;0.00518)		TGAACTTGATGGGCACAGGCC	0.562													7	11					0	0	1	0	0
RAD54L2	23132	broad.mit.edu	37	3	51679737	51679737	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:51679737C>T	uc011bdt.1	+	17	2912	c.2787C>T	c.(2785-2787)GTC>GTT	p.V929V	RAD54L2_uc003dbh.2_Silent_p.V518V|RAD54L2_uc011bdu.1_Silent_p.V623V|RAD54L2_uc003dbj.2_Silent_p.V255V	NM_015106	NP_055921	Q9Y4B4	ARIP4_HUMAN	RAD54-like 2	929						nucleus	ATP binding|DNA binding|helicase activity			ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;0.000102)|Kidney(197;0.000758)|KIRC - Kidney renal clear cell carcinoma(197;0.000896)		AGGAGTCAGTCCTGCAACTGG	0.502													4	23					0	0	1	0	0
TLR9	54106	broad.mit.edu	37	3	52257892	52257892	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:52257892G>A	uc003dda.1	-	2	1074	c.440C>T	c.(439-441)TCC>TTC	p.S147F	TLR9_uc003ddb.2_Missense_Mutation_p.S244F	NM_017442	NP_059138	Q9NR96	TLR9_HUMAN	toll-like receptor 9 isoform A precursor	147	LRR 3.|Extracellular (Potential).				defense response to bacterium|fibroblast growth factor receptor signaling pathway|I-kappaB phosphorylation|inflammatory response|innate immune response|insulin receptor signaling pathway|maintenance of gastrointestinal epithelium|negative regulation of interleukin-6 production|negative regulation of interleukin-8 production|negative regulation of NF-kappaB transcription factor activity|negative regulation of toll-like receptor signaling pathway|positive regulation of chemokine production|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interferon-alpha biosynthetic process|positive regulation of interferon-beta biosynthetic process|positive regulation of interferon-beta production|positive regulation of interferon-gamma biosynthetic process|positive regulation of interleukin-10 production|positive regulation of interleukin-12 production|positive regulation of interleukin-18 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 production|positive regulation of JUN kinase activity|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of toll-like receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor production|response to molecule of bacterial origin	apical plasma membrane|basolateral plasma membrane|early phagosome|endoplasmic reticulum membrane|endosome membrane|extracellular region|integral to membrane|lysosome	interleukin-1 receptor binding|siRNA binding|transmembrane receptor activity			large_intestine(2)|skin(2)	4				BRCA - Breast invasive adenocarcinoma(193;2.41e-05)|Kidney(197;0.000537)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)	Chloroquine(DB00608)	GAGGGACAGGGATATGAGGGA	0.557													58	163					0	0	1	0	0
PBRM1	55193	broad.mit.edu	37	3	52584443	52584443	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:52584443G>A	uc003des.2	-	29	4903	c.4891C>T	c.(4891-4893)CTG>TTG	p.L1631L	PBRM1_uc003dex.2_RNA|PBRM1_uc003deq.2_Silent_p.L1524L|PBRM1_uc003der.2_Silent_p.L1544L|PBRM1_uc003det.2_Silent_p.L1539L|PBRM1_uc003deu.2_Silent_p.L1594L|PBRM1_uc003dev.2_RNA|PBRM1_uc003dew.2_Silent_p.L1576L|PBRM1_uc010hmk.1_Silent_p.L1551L|PBRM1_uc003dey.2_Silent_p.L1524L	NM_181042	NP_060635	Q86U86	PB1_HUMAN	polybromo 1 isoform 4	1631					chromatin remodeling|mitosis|negative regulation of cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear chromosome	chromatin binding|DNA binding|protein binding			kidney(136)|breast(4)	140				BRCA - Breast invasive adenocarcinoma(193;1.8e-05)|Kidney(197;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00122)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)		TTACCTGCCAGTGTCTGATCC	0.453			Mis|N|F|S|D|O		clear cell renal carcinoma|breast								16	27					0	0	1	0	0
CACNA1D	776	broad.mit.edu	37	3	53845398	53845398	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:53845398C>T	uc003dgv.3	+	48	6614	c.6451C>T	c.(6451-6453)CTG>TTG	p.L2151L	CACNA1D_uc003dgu.3_Silent_p.L2171L|CACNA1D_uc003dgy.3_Silent_p.L2127L|CACNA1D_uc003dgw.3_Silent_p.L1818L|CACNA1D_uc011bes.1_RNA	NM_001128840	NP_001122312	Q01668	CAC1D_HUMAN	calcium channel, voltage-dependent, L type,	2151	Cytoplasmic (Potential).				axon guidance|energy reserve metabolic process|regulation of insulin secretion	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(6)|upper_aerodigestive_tract(2)|liver(1)|central_nervous_system(1)|skin(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.00029)|KIRC - Kidney renal clear cell carcinoma(284;0.0145)|Kidney(284;0.0175)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)	Verapamil(DB00661)	TGAGGAGGACCTGGCGGATGA	0.622													18	24					0	0	1	0	0
LRTM1	57408	broad.mit.edu	37	3	54958913	54958913	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:54958913G>A	uc003dhl.2	-	2	471	c.337C>T	c.(337-339)CTG>TTG	p.L113L	CACNA2D3_uc003dhf.2_Intron|CACNA2D3_uc003dhg.1_Intron|CACNA2D3_uc003dhh.1_Intron	NM_020678	NP_065729	Q9HBL6	LRTM1_HUMAN	leucine-rich repeats and transmembrane domains 1	113	LRR 3.|Extracellular (Potential).					integral to membrane					0				KIRC - Kidney renal clear cell carcinoma(284;0.00975)|Kidney(284;0.0112)|OV - Ovarian serous cystadenocarcinoma(275;0.0502)		CTGCTTTCCAGGGAAAGGAGT	0.473													28	32					0	0	1	0	0
ERC2	26059	broad.mit.edu	37	3	56207538	56207538	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:56207538C>T	uc003dhr.1	-	4	1341	c.1085G>A	c.(1084-1086)CGA>CAA	p.R362Q		NM_015576	NP_056391	O15083	ERC2_HUMAN	cytomatrix protein p110	362	Potential.					cell junction|cytoplasm|cytoskeleton|growth cone|presynaptic membrane|synaptosome	protein binding			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0667)|Kidney(284;0.0873)|OV - Ovarian serous cystadenocarcinoma(275;0.219)		TTGGCTTCTTCGGTGCAATTC	0.502													20	34					0	0	1	0	0
FLNB	2317	broad.mit.edu	37	3	58095013	58095013	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:58095013C>T	uc003djj.2	+	14	2328	c.2163C>T	c.(2161-2163)GTC>GTT	p.V721V	FLNB_uc010hne.2_Silent_p.V721V|FLNB_uc003djk.2_Silent_p.V721V|FLNB_uc010hnf.2_Silent_p.V721V|FLNB_uc003djl.2_Silent_p.V552V|FLNB_uc003djm.2_Silent_p.V552V	NM_001457	NP_001448	O75369	FLNB_HUMAN	filamin B isoform 2	721	Filamin 5.				actin cytoskeleton organization|cell differentiation|cytoskeletal anchoring at plasma membrane|signal transduction	cell cortex|integral to membrane|nucleus|sarcomere	actin binding			breast(8)|ovary(5)|lung(3)|skin(2)|central_nervous_system(1)	19				BRCA - Breast invasive adenocarcinoma(55;0.000335)|KIRC - Kidney renal clear cell carcinoma(284;0.0726)|Kidney(284;0.0898)		TTGCTGTGGTCTGGGGAGGCG	0.547													10	30					0	0	1	0	0
FLNB	2317	broad.mit.edu	37	3	58095799	58095799	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:58095799G>A	uc003djj.2	+	16	2551	c.2386G>A	c.(2386-2388)GAT>AAT	p.D796N	FLNB_uc010hne.2_Missense_Mutation_p.D796N|FLNB_uc003djk.2_Missense_Mutation_p.D796N|FLNB_uc010hnf.2_Missense_Mutation_p.D796N|FLNB_uc003djl.2_Missense_Mutation_p.D627N|FLNB_uc003djm.2_Missense_Mutation_p.D627N	NM_001457	NP_001448	O75369	FLNB_HUMAN	filamin B isoform 2	796	Filamin 6.				actin cytoskeleton organization|cell differentiation|cytoskeletal anchoring at plasma membrane|signal transduction	cell cortex|integral to membrane|nucleus|sarcomere	actin binding			breast(8)|ovary(5)|lung(3)|skin(2)|central_nervous_system(1)	19				BRCA - Breast invasive adenocarcinoma(55;0.000335)|KIRC - Kidney renal clear cell carcinoma(284;0.0726)|Kidney(284;0.0898)		GGAAGACGTGGATTTTGACAT	0.443													71	115					0	0	1	0	0
CADPS	8618	broad.mit.edu	37	3	62385095	62385095	+	Missense_Mutation	SNP	C	T	T	rs147103435		TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:62385095C>T	uc003dll.2	-	30	4408	c.4048G>A	c.(4048-4050)GAA>AAA	p.E1350K	CADPS_uc003dlj.1_Missense_Mutation_p.E305K|CADPS_uc003dlk.1_Missense_Mutation_p.E798K|CADPS_uc003dlm.2_Missense_Mutation_p.E1311K|CADPS_uc003dln.2_Missense_Mutation_p.E1271K	NM_003716	NP_003707	Q9ULU8	CAPS1_HUMAN	Ca2+-dependent secretion activator isoform 1	1350	Mediates targeting and association with DCVs (By similarity).				exocytosis|protein transport	cell junction|cytoplasmic vesicle membrane|cytosol|synapse	lipid binding|metal ion binding			central_nervous_system(2)|ovary(1)	3		Lung SC(41;0.0452)		BRCA - Breast invasive adenocarcinoma(55;5.98e-05)|KIRC - Kidney renal clear cell carcinoma(15;0.0246)|Kidney(15;0.0334)		TCGTCTTCTTCGTCTTCCTCA	0.498													50	85					0	0	1	0	0
KBTBD8	84541	broad.mit.edu	37	3	67058673	67058673	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:67058673C>T	uc003dmy.2	+	4	1723	c.1670C>T	c.(1669-1671)TCC>TTC	p.S557F	KBTBD8_uc011bfv.1_Missense_Mutation_p.S115F	NM_032505	NP_115894	Q8NFY9	KBTB8_HUMAN	T-cell activation kelch repeat protein	557	Kelch 5.									ovary(2)|large_intestine(1)|breast(1)	4		Lung NSC(201;0.0765)		BRCA - Breast invasive adenocarcinoma(55;6.02e-06)|KIRC - Kidney renal clear cell carcinoma(39;0.105)|Kidney(39;0.125)		AGAAAAAATTCCCTTTACCAA	0.433													42	76					0	0	1	0	0
UBA3	9039	broad.mit.edu	37	3	69111310	69111310	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:69111310G>A	uc003dno.2	-	10	734	c.714C>T	c.(712-714)ACC>ACT	p.T238T	UBA3_uc003dnq.2_Silent_p.T224T|UBA3_uc011bfy.1_Silent_p.T61T|UBA3_uc011bfz.1_Silent_p.T61T	NM_003968	NP_003959	Q8TBC4	UBA3_HUMAN	ubiquitin-activating enzyme 3 isoform 1	238				T->A: No effect on NEDD8 adenylation; impairs thioester intermediate formation.	protein neddylation|proteolysis	nucleus	acid-amino acid ligase activity|ATP binding|protein heterodimerization activity			ovary(1)	1		Lung NSC(201;0.0193)|Prostate(884;0.174)		BRCA - Breast invasive adenocarcinoma(55;7.98e-05)|Epithelial(33;0.000363)|LUSC - Lung squamous cell carcinoma(21;0.012)|Lung(16;0.0191)|KIRC - Kidney renal clear cell carcinoma(39;0.206)|Kidney(39;0.241)		TAGATGCAATGGTGCACATGG	0.368													33	70					0	0	1	0	0
ROBO2	6092	broad.mit.edu	37	3	77147247	77147247	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:77147247G>A	uc003dpy.3	+	2	787	c.144G>A	c.(142-144)ACG>ACA	p.T48T	ROBO2_uc003dpz.2_Silent_p.T48T|ROBO2_uc011bgj.1_RNA|ROBO2_uc011bgk.1_Silent_p.T48T	NM_002942	NP_002933	Q9HCK4	ROBO2_HUMAN	roundabout, axon guidance receptor, homolog 2	48	Ig-like C2-type 1.|Extracellular (Potential).				apoptosis involved in luteolysis|axon midline choice point recognition|cellular response to hormone stimulus|homophilic cell adhesion|metanephros development|negative regulation of negative chemotaxis|negative regulation of synaptogenesis|olfactory bulb interneuron development|positive regulation of axonogenesis|retinal ganglion cell axon guidance|ureteric bud development	axolemma|cell surface|integral to membrane	axon guidance receptor activity|identical protein binding	p.T48K(1)		lung(5)|skin(3)|ovary(1)|large_intestine(1)|liver(1)	11				Epithelial(33;0.00199)|LUSC - Lung squamous cell carcinoma(21;0.008)|BRCA - Breast invasive adenocarcinoma(55;0.00884)|Lung(72;0.0183)|KIRC - Kidney renal clear cell carcinoma(39;0.0832)|Kidney(39;0.103)		GCGAGCCCACGACTCTGAACT	0.592													13	14					0	0	1	0	0
CADM2	253559	broad.mit.edu	37	3	85984961	85984961	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:85984961G>A	uc003dqj.2	+	6	1344	c.718G>A	c.(718-720)GAA>AAA	p.E240K	CADM2_uc003dqk.2_Missense_Mutation_p.E249K|CADM2_uc003dql.2_Missense_Mutation_p.E242K	NM_153184	NP_694854	Q8N3J6	CADM2_HUMAN	immunoglobulin superfamily, member 4D	240	Ig-like C2-type 2.|Extracellular (Potential).				adherens junction organization|cell junction assembly	integral to membrane|plasma membrane				ovary(1)|lung(1)|kidney(1)|skin(1)	4		Lung NSC(201;0.0148)		LUSC - Lung squamous cell carcinoma(29;0.000815)|Lung(72;0.00304)|BRCA - Breast invasive adenocarcinoma(55;0.156)|Epithelial(33;0.157)		TTTTCCACAAGAAGGACAGCC	0.294													43	111					0	0	1	0	0
CADM2	253559	broad.mit.edu	37	3	86114842	86114842	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:86114842C>T	uc003dqj.2	+	9	1777	c.1151C>T	c.(1150-1152)TCT>TTT	p.S384F	CADM2_uc003dqk.2_Missense_Mutation_p.S353F|CADM2_uc003dql.2_Missense_Mutation_p.S386F	NM_153184	NP_694854	Q8N3J6	CADM2_HUMAN	immunoglobulin superfamily, member 4D	384	Helical; (Potential).				adherens junction organization|cell junction assembly	integral to membrane|plasma membrane				ovary(1)|lung(1)|kidney(1)|skin(1)	4		Lung NSC(201;0.0148)		LUSC - Lung squamous cell carcinoma(29;0.000815)|Lung(72;0.00304)|BRCA - Breast invasive adenocarcinoma(55;0.156)|Epithelial(33;0.157)		ACGCTGTGTTCTATCTTTCTG	0.423													14	36					0	0	1	0	0
EPHA6	285220	broad.mit.edu	37	3	96963084	96963084	+	Missense_Mutation	SNP	T	G	G			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:96963084T>G	uc010how.1	+	5	1602	c.1559T>G	c.(1558-1560)TTT>TGT	p.F520C	EPHA6_uc003drp.1_Missense_Mutation_p.F520C	NM_001080448	NP_001073917	Q9UF33	EPHA6_HUMAN	EPH receptor A6 isoform a	425	Fibronectin type-III 1.|Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			stomach(5)|lung(4)|central_nervous_system(3)|breast(1)|skin(1)|ovary(1)|kidney(1)	16						GAGTTGAGTTTTTCTCCCAAG	0.403													40	67					0	0	1	0	0
CPOX	1371	broad.mit.edu	37	3	98307605	98307605	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:98307605T>C	uc003dsx.2	-	4	998	c.905A>G	c.(904-906)GAG>GGG	p.E302G		NM_000097	NP_000088	P36551	HEM6_HUMAN	coproporphyrinogen oxidase precursor	302						mitochondrial intermembrane space	coproporphyrinogen oxidase activity|protein homodimerization activity				0						GTCACAAGCCTCCTTCAGAGT	0.433													23	42					0	0	1	0	0
FILIP1L	11259	broad.mit.edu	37	3	99569165	99569165	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:99569165C>T	uc003dtm.2	-	5	1818	c.1355G>A	c.(1354-1356)AGG>AAG	p.R452K	C3orf26_uc003dtk.1_Intron|C3orf26_uc003dtl.2_Intron|FILIP1L_uc003dto.2_Missense_Mutation_p.R452K|FILIP1L_uc010hpf.2_Missense_Mutation_p.R28K|FILIP1L_uc010hpg.2_Missense_Mutation_p.R212K|FILIP1L_uc003dtn.2_Missense_Mutation_p.R212K|FILIP1L_uc003dtp.1_Missense_Mutation_p.R212K	NM_182909	NP_878913	Q4L180	FIL1L_HUMAN	filamin A interacting protein 1-like isoform 1	452	Potential.					cytoplasm|membrane|myosin complex|nucleus				ovary(1)	1						TGTGGTCATCCTTTCTTTTTC	0.363													29	61					0	0	1	0	0
ABI3BP	25890	broad.mit.edu	37	3	100527069	100527069	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:100527069C>T	uc003dun.2	-	19	1693	c.1608G>A	c.(1606-1608)CAG>CAA	p.Q536Q	ABI3BP_uc003duj.2_Silent_p.Q91Q|ABI3BP_uc003duk.2_Silent_p.Q220Q|ABI3BP_uc003dul.2_Silent_p.Q341Q|ABI3BP_uc011bhd.1_Silent_p.Q490Q|ABI3BP_uc003dum.2_5'UTR	NM_015429	NP_056244	Q7Z7G0	TARSH_HUMAN	ABI gene family, member 3 (NESH) binding protein	536	Pro-rich.					extracellular space				ovary(2)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)	4						CACGTGGTGTCTGCTTGGGAG	0.418													9	23					0	0	1	0	0
LOC285359	285359	broad.mit.edu	37	3	101431684	101431684	+	RNA	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:101431684G>A	uc003dvj.2	+	1		c.407G>A				NR_002941				Homo sapiens cDNA FLJ12205 fis, clone MAMMA1000931.												0						TACAAACAAGGAATTCCCCTC	0.428													19	54					0	0	1	0	0
ZPLD1	131368	broad.mit.edu	37	3	102171898	102171898	+	Missense_Mutation	SNP	G	A	A	rs147615734		TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:102171898G>A	uc003dvs.1	+	10	1124	c.242G>A	c.(241-243)GGG>GAG	p.G81E	ZPLD1_uc003dvt.1_Missense_Mutation_p.G97E|ZPLD1_uc011bhg.1_Missense_Mutation_p.G81E	NM_175056	NP_778226	Q8TCW7	ZPLD1_HUMAN	zona pellucida-like domain containing 1	81	ZP.|Extracellular (Potential).					integral to membrane				ovary(2)|skin(2)|central_nervous_system(1)	5						CACTGCAGAGGGTTCATCAAT	0.448													23	29					0	0	1	0	0
MYH15	22989	broad.mit.edu	37	3	108172946	108172946	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:108172946C>T	uc003dxa.1	-	22	2423	c.2366G>A	c.(2365-2367)AGA>AAA	p.R789K		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15	789	Myosin head-like.					myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						TCTCTCATCTCTTATTGCTTC	0.393													22	23					0	0	1	0	0
MYH15	22989	broad.mit.edu	37	3	108172974	108172974	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:108172974C>T	uc003dxa.1	-	22	2395	c.2338G>A	c.(2338-2340)GGG>AGG	p.G780R		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15	780	Myosin head-like.|Actin-binding (By similarity).					myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						CCCAGAAACCCAGCTTTAAAA	0.398													15	33					0	0	1	0	0
PLCXD2	257068	broad.mit.edu	37	3	111427208	111427208	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:111427208G>A	uc003dya.2	+	2	1185	c.599G>A	c.(598-600)CGA>CAA	p.R200Q	PLCXD2_uc003dyb.2_Missense_Mutation_p.R200Q|PLCXD2_uc003dxz.2_Missense_Mutation_p.R200Q	NM_001134478	NP_001127950	Q0VAA5	PLCX2_HUMAN	phosphatidylinositol-specific phospholipase C, X	200	PI-PLC X-box.				intracellular signal transduction|lipid catabolic process		phospholipase C activity|signal transducer activity			skin(1)	1						TTGACGCTGCGAACTCTGTGG	0.512													25	57					0	0	1	0	0
TMPRSS7	344805	broad.mit.edu	37	3	111794183	111794183	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:111794183C>T	uc010hqb.2	+	13	1591	c.1421C>T	c.(1420-1422)TCC>TTC	p.S474F	TMPRSS7_uc011bhr.1_Missense_Mutation_p.S329F	NM_001042575	NP_001036040	Q7RTY8	TMPS7_HUMAN	transmembrane protease, serine 7	600	Extracellular (Potential).				proteolysis	integral to membrane|plasma membrane	serine-type endopeptidase activity			ovary(1)|kidney(1)	2						AGCAGGAGTTCCTCCGCCCTT	0.547													50	88					0	0	1	0	0
WDR52	55779	broad.mit.edu	37	3	113082325	113082325	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:113082325T>C	uc003eae.1	-	20	2816	c.2770A>G	c.(2770-2772)AGT>GGT	p.S924G	WDR52_uc003ead.1_Missense_Mutation_p.S105G	NM_018338	NP_060808	Q96MT7	WDR52_HUMAN	WD repeat domain 52 isoform 2	924										central_nervous_system(1)	1						TTCCCATACCTGTAGGCTTTG	0.358													9	22					0	0	1	0	0
C3orf30	152405	broad.mit.edu	37	3	118870139	118870139	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:118870139G>A	uc003ecb.1	+	3	1651	c.1611G>A	c.(1609-1611)TAG>TAA	p.*537*	C3orf30_uc011biw.1_Silent_p.*536*	NM_152539	NP_689752	Q96M34	CC030_HUMAN	hypothetical protein LOC152405	537										ovary(2)	2				GBM - Glioblastoma multiforme(114;0.222)		GCCAGGTATAGAATTGGAGAA	0.244													59	115					0	0	1	0	0
ARHGAP31	57514	broad.mit.edu	37	3	119101169	119101169	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:119101169C>T	uc003ecj.3	+	5	994	c.462C>T	c.(460-462)GCC>GCT	p.A154A		NM_020754	NP_065805	Q2M1Z3	RHG31_HUMAN	Cdc42 GTPase-activating protein	154	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|focal adhesion|lamellipodium	GTPase activator activity			ovary(2)	2						GACACCTGGCCCATATCGCCT	0.522													24	97					0	0	1	0	0
STXBP5L	9515	broad.mit.edu	37	3	120840528	120840528	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:120840528G>A	uc003eec.3	+	7	786	c.646G>A	c.(646-648)GAT>AAT	p.D216N	STXBP5L_uc011bji.1_Missense_Mutation_p.D216N	NM_014980	NP_055795	Q9Y2K9	STB5L_HUMAN	syntaxin binding protein 5-like	216	WD 4.				exocytosis|protein transport	cytoplasm|integral to membrane|plasma membrane				ovary(7)|skin(2)	9				GBM - Glioblastoma multiforme(114;0.0694)		ACATTTAAGCGATAGCCCAAG	0.294													17	33					0	0	1	0	0
SLC15A2	6565	broad.mit.edu	37	3	121659821	121659821	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:121659821G>A	uc003eep.2	+	22	2310	c.2157G>A	c.(2155-2157)ATG>ATA	p.M719I	SLC15A2_uc011bjn.1_Missense_Mutation_p.M688I	NM_021082	NP_066568	Q16348	S15A2_HUMAN	peptide transporter 2 isoform a	719					protein transport	integral to plasma membrane	peptide:hydrogen symporter activity|protein binding			skin(1)	1				GBM - Glioblastoma multiforme(114;0.0967)	Cefadroxil(DB01140)	AGGGGAACATGATCAAACTAG	0.458													16	34					0	0	1	0	0
CASR	846	broad.mit.edu	37	3	121980473	121980473	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:121980473G>A	uc003eev.3	+	4	963	c.591G>A	c.(589-591)ATG>ATA	p.M197I	CASR_uc003eew.3_Missense_Mutation_p.M197I	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	197	Extracellular (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	CCACTGCCATGGCAGACATCA	0.532													53	107					0	0	1	0	0
CASR	846	broad.mit.edu	37	3	122002825	122002825	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:122002825G>A	uc003eev.3	+	7	2396	c.2024G>A	c.(2023-2025)TGG>TAG	p.W675*	CASR_uc003eew.3_Nonsense_Mutation_p.W685*	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	675	Extracellular (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	CCCCAGGACTGGACGTGCCGC	0.602													42	91					0	0	1	0	0
PARP15	165631	broad.mit.edu	37	3	122353901	122353901	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:122353901G>A	uc003efm.2	+	11	1673	c.1607G>A	c.(1606-1608)AGC>AAC	p.S536N	PARP15_uc003efn.2_Missense_Mutation_p.S341N|PARP15_uc003efo.1_Missense_Mutation_p.S283N|PARP15_uc003efp.1_Missense_Mutation_p.S302N|PARP15_uc011bjt.1_Missense_Mutation_p.S233N	NM_001113523	NP_001106995	Q460N3	PAR15_HUMAN	poly (ADP-ribose) polymerase family, member 15	514	PARP catalytic.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	NAD+ ADP-ribosyltransferase activity			lung(3)|upper_aerodigestive_tract(1)|ovary(1)	5				GBM - Glioblastoma multiforme(114;0.0531)		CTCTGGCAGAGCTACCAGGTA	0.408													25	38					0	0	1	0	0
SEMA5B	54437	broad.mit.edu	37	3	122631135	122631135	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:122631135C>A	uc003efz.1	-	19	3084	c.2780G>T	c.(2779-2781)GGT>GTT	p.G927V	SEMA5B_uc011bju.1_Intron|SEMA5B_uc003ega.1_RNA|SEMA5B_uc003egb.1_Missense_Mutation_p.G927V|SEMA5B_uc003efy.1_5'Flank	NM_001031702	NP_001026872	Q9P283	SEM5B_HUMAN	semaphorin 5B isoform 1	927	Extracellular (Potential).|TSP type-1 4.				cell differentiation|nervous system development	integral to membrane	receptor activity			ovary(2)|breast(2)|pancreas(2)|central_nervous_system(1)	7				GBM - Glioblastoma multiforme(114;0.0367)		GTGACCCCCACCACAGGAAGC	0.652													6	19					8.12818e-05	8.17722e-05	1	1	0
SEMA5B	54437	broad.mit.edu	37	3	122634725	122634725	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:122634725C>T	uc003efz.1	-	13	2005	c.1701G>A	c.(1699-1701)GGG>GGA	p.G567G	SEMA5B_uc011bju.1_Silent_p.G509G|SEMA5B_uc003ega.1_RNA|SEMA5B_uc003egb.1_Silent_p.G567G|SEMA5B_uc010hro.1_Silent_p.G509G	NM_001031702	NP_001026872	Q9P283	SEM5B_HUMAN	semaphorin 5B isoform 1	567	Extracellular (Potential).				cell differentiation|nervous system development	integral to membrane	receptor activity			ovary(2)|breast(2)|pancreas(2)|central_nervous_system(1)	7				GBM - Glioblastoma multiforme(114;0.0367)		GGTCCCGGGCCCCCAGGCATG	0.617													15	35					0	0	1	0	0
ADCY5	111	broad.mit.edu	37	3	123044230	123044230	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:123044230G>A	uc003egh.1	-	8	2027	c.2027C>T	c.(2026-2028)GCT>GTT	p.A676V	ADCY5_uc003egg.1_Missense_Mutation_p.A309V|ADCY5_uc003egi.1_Missense_Mutation_p.A235V	NM_183357	NP_899200	O95622	ADCY5_HUMAN	adenylate cyclase 5	676	Cytoplasmic (Potential).				activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding			ovary(4)	4				GBM - Glioblastoma multiforme(114;0.0342)		GGGGCGCTCAGCCCCCCAGTG	0.587													54	95					0	0	1	0	0
MYLK	4638	broad.mit.edu	37	3	123427623	123427623	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:123427623C>T	uc003ego.2	-	15	2344	c.2062G>A	c.(2062-2064)GAG>AAG	p.E688K	MYLK_uc011bjw.1_Missense_Mutation_p.E688K|MYLK_uc003egp.2_Missense_Mutation_p.E619K|MYLK_uc003egq.2_Missense_Mutation_p.E688K|MYLK_uc003egr.2_Missense_Mutation_p.E619K|MYLK_uc003egs.2_Missense_Mutation_p.E512K	NM_053025	NP_444253	Q15746	MYLK_HUMAN	myosin light chain kinase isoform 1	688	Ig-like C2-type 5.				aorta smooth muscle tissue morphogenesis|muscle contraction	cytosol	actin binding|ATP binding|calmodulin binding|metal ion binding|myosin light chain kinase activity			ovary(6)|skin(2)|stomach(1)	9		Lung NSC(201;0.0496)		GBM - Glioblastoma multiforme(114;0.0736)		CCCGTGTCCTCCGGGAACACT	0.582													54	74					0	0	1	0	0
MYLK	4638	broad.mit.edu	37	3	123452976	123452976	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:123452976C>T	uc003ego.2	-	10	1149	c.867G>A	c.(865-867)GAG>GAA	p.E289E	MYLK_uc011bjw.1_Silent_p.E289E|MYLK_uc003egp.2_Silent_p.E289E|MYLK_uc003egq.2_Silent_p.E289E|MYLK_uc003egr.2_Silent_p.E289E|MYLK_uc003egs.2_Silent_p.E113E	NM_053025	NP_444253	Q15746	MYLK_HUMAN	myosin light chain kinase isoform 1	289					aorta smooth muscle tissue morphogenesis|muscle contraction	cytosol	actin binding|ATP binding|calmodulin binding|metal ion binding|myosin light chain kinase activity			ovary(6)|skin(2)|stomach(1)	9		Lung NSC(201;0.0496)		GBM - Glioblastoma multiforme(114;0.0736)		TGGCTGCAGCCTCCAGACTGT	0.552													31	39					0	0	1	0	0
KALRN	8997	broad.mit.edu	37	3	124053168	124053168	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:124053168G>A	uc003ehg.2	+	9	1594	c.1467G>A	c.(1465-1467)GGG>GGA	p.G489G	KALRN_uc010hrv.1_Silent_p.G489G|KALRN_uc003ehf.1_Silent_p.G489G|KALRN_uc011bjy.1_Silent_p.G489G	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	489					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						TGAGCCCTGGGAACTCCGAAT	0.562													59	101					0	0	1	0	0
PLXNA1	5361	broad.mit.edu	37	3	126747078	126747078	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:126747078G>C	uc003ejg.2	+	24	4499	c.4495G>C	c.(4495-4497)GGG>CGG	p.G1499R	PLXNA1_uc003ejh.2_Missense_Mutation_p.G167R	NM_032242	NP_115618	Q9UIW2	PLXA1_HUMAN	plexin A1	1522	Cytoplasmic (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane	semaphorin receptor activity			ovary(1)|pancreas(1)|skin(1)	3				GBM - Glioblastoma multiforme(114;0.155)		GCCGGTGAAGGGGCTGGACTG	0.652													14	27					0	0	1	0	0
MGLL	11343	broad.mit.edu	37	3	127411127	127411127	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:127411127G>A	uc003ejx.2	-	8	971	c.826C>T	c.(826-828)CCT>TCT	p.P276S	MGLL_uc003ejw.2_Missense_Mutation_p.P286S|MGLL_uc011bko.1_Missense_Mutation_p.P256S|MGLL_uc003ejv.2_Missense_Mutation_p.P250S	NM_001003794	NP_001003794	Q99685	MGLL_HUMAN	monoglyceride lipase isoform 2	276					arachidonic acid metabolic process|fatty acid biosynthetic process|inflammatory response|platelet activation|regulation of endocannabinoid signaling pathway|regulation of inflammatory response|regulation of sensory perception of pain|triglyceride catabolic process	plasma membrane	acylglycerol lipase activity|carboxylesterase activity|lysophospholipase activity|protein homodimerization activity				0						GTGACTTCAGGAAGCTCCTTG	0.537													32	46					0	0	1	0	0
COL29A1	256076	broad.mit.edu	37	3	130095498	130095498	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:130095498G>A	uc010htj.1	+	3	980	c.486G>A	c.(484-486)GTG>GTA	p.V162V	COL29A1_uc010hti.1_RNA	NM_153264	NP_694996	A8TX70	CO6A5_HUMAN	collagen, type XXIX, alpha 1	162	Nonhelical region.|VWFA 1.				axon guidance|cell adhesion	collagen					0						AAGACGGGGTGAAAATTATCT	0.507													5	11					0	0	1	0	0
DNAJC13	23317	broad.mit.edu	37	3	132213988	132213988	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:132213988C>T	uc003eor.2	+	35	4063	c.3998C>T	c.(3997-3999)CCT>CTT	p.P1333L		NM_015268	NP_056083	O75165	DJC13_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 13	1333	J.						heat shock protein binding			ovary(1)|breast(1)	2						AAGTACCACCCTGATAAGAAT	0.393													9	16					0	0	1	0	0
DNAJC13	23317	broad.mit.edu	37	3	132242500	132242500	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:132242500A>T	uc003eor.2	+	51	6068	c.6003A>T	c.(6001-6003)GAA>GAT	p.E2001D		NM_015268	NP_056083	O75165	DJC13_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 13	2001							heat shock protein binding			ovary(1)|breast(1)	2						AGCCTAGAGAATTTCTTATTG	0.413													28	51					0	0	1	0	0
TMEM108	66000	broad.mit.edu	37	3	133099474	133099474	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:133099474C>T	uc003eph.2	+	4	1193	c.919C>T	c.(919-921)CCT>TCT	p.P307S	TMEM108_uc003epi.2_Missense_Mutation_p.P307S|TMEM108_uc003epj.1_Missense_Mutation_p.P307S|TMEM108_uc003epk.2_Intron|TMEM108_uc003epm.2_Missense_Mutation_p.P258S	NM_023943	NP_076432	Q6UXF1	TM108_HUMAN	transmembrane protein 108 precursor	307	Extracellular (Potential).					integral to membrane				ovary(2)|skin(2)	4						CTCAGGTGCCCCTGTCAGTCC	0.627													16	22					0	0	1	0	0
PIK3CB	5291	broad.mit.edu	37	3	138376566	138376566	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:138376566G>A	uc011bmq.1	-	20	2908	c.2908C>T	c.(2908-2910)CAA>TAA	p.Q970*	PIK3CB_uc011bmn.1_Nonsense_Mutation_p.Q482*|PIK3CB_uc011bmo.1_Nonsense_Mutation_p.Q421*|PIK3CB_uc011bmp.1_Nonsense_Mutation_p.Q557*|PIK3CB_uc003est.1_5'Flank	NM_006219	NP_006210	P42338	PK3CB_HUMAN	catalytic phosphatidylinositol 3-kinase beta	970	PI3K/PI4K.				activation of MAPK activity|chemotaxis|fibroblast growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|T cell receptor signaling pathway	phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity			breast(2)|ovary(1)|lung(1)|skin(1)	5						GTTTTTCCTTGTTGAATGACA	0.398													127	237					0	0	1	0	0
PRR23B	389151	broad.mit.edu	37	3	138739000	138739000	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:138739000C>T	uc003esy.1	-	1	769	c.504G>A	c.(502-504)ATG>ATA	p.M168I		NM_001013650	NP_001013672	Q6ZRT6	PR23B_HUMAN	proline rich 23B	168										breast(1)	1						TTGGGGAGTCCATCCGGAGCT	0.652													31	52					0	0	1	0	0
ZIC4	84107	broad.mit.edu	37	3	147108974	147108974	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:147108974C>T	uc003ewd.1	-	4	1021	c.748G>A	c.(748-750)GAC>AAC	p.D250N	ZIC4_uc003ewc.1_Missense_Mutation_p.D180N|ZIC4_uc011bno.1_Missense_Mutation_p.D300N	NM_032153	NP_115529	Q8N9L1	ZIC4_HUMAN	zinc finger protein of the cerebellum 4	250	C2H2-type 4.					nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|central_nervous_system(1)	2						TTCTTACGGTCGCTGCTGTTG	0.612													5	31					0	0	1	0	0
P2RY12	64805	broad.mit.edu	37	3	151056366	151056366	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:151056366C>T	uc003eyw.1	-	2	484	c.268G>A	c.(268-270)GGA>AGA	p.G90R	MED12L_uc011bnz.1_Intron|MED12L_uc003eyp.2_Intron|P2RY12_uc011boa.1_Missense_Mutation_p.G90R|P2RY12_uc003eyx.1_Missense_Mutation_p.G90R	NM_176876	NP_795345	Q9H244	P2Y12_HUMAN	purinergic receptor P2Y12	90	Extracellular (Potential).				platelet activation	integral to membrane|plasma membrane	guanyl-nucleotide exchange factor activity			skin(1)	1			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)		Clopidogrel(DB00758)|Epoprostenol(DB01240)|Ticlopidine(DB00208)|Treprostinil(DB00374)	CTCAGTGGTCCTGTTCCCAGT	0.343													25	38					0	0	1	0	0
MED12L	116931	broad.mit.edu	37	3	151105631	151105632	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:151105631_151105632CC>TT	uc003eyp.2	+	35	5055_5056	c.5017_5018CC>TT	c.(5017-5019)CCG>TTG	p.P1673L	MED12L_uc011bnz.1_Missense_Mutation_p.P1533L|MED12L_uc003eyy.1_Missense_Mutation_p.P836L	NM_053002	NP_443728	Q86YW9	MD12L_HUMAN	mediator of RNA polymerase II transcription,	1673					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	mediator complex				ovary(4)|large_intestine(1)|central_nervous_system(1)|skin(1)	7			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			GAAGGTGTCCCCGTGGGACTTG	0.525													12	103					0	0	1	0	0
IGSF10	285313	broad.mit.edu	37	3	151155689	151155689	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:151155689C>T	uc011bod.1	-	6	6660	c.6660G>A	c.(6658-6660)GGG>GGA	p.G2220G	IGSF10_uc011bob.1_Silent_p.G247G|IGSF10_uc011boc.1_Silent_p.G199G	NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	immunoglobulin superfamily, member 10 precursor	2220	Ig-like C2-type 8.				cell differentiation|multicellular organismal development|ossification	extracellular region				skin(7)|ovary(5)|central_nervous_system(1)	13			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			TGGTGTCATCCCCACTGGGAT	0.423													54	65					0	0	1	0	0
IGSF10	285313	broad.mit.edu	37	3	151155798	151155798	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:151155798G>A	uc011bod.1	-	6	6551	c.6551C>T	c.(6550-6552)TCC>TTC	p.S2184F	IGSF10_uc011bob.1_Missense_Mutation_p.S211F|IGSF10_uc011boc.1_Missense_Mutation_p.S163F	NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	immunoglobulin superfamily, member 10 precursor	2184	Ig-like C2-type 8.				cell differentiation|multicellular organismal development|ossification	extracellular region				skin(7)|ovary(5)|central_nervous_system(1)	13			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			AATGGAGAAGGAAATCATGTC	0.438													38	61					0	0	1	0	0
GPR149	344758	broad.mit.edu	37	3	154055907	154055907	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:154055907G>A	uc003faa.2	-	4	1877	c.1777C>T	c.(1777-1779)CGA>TGA	p.R593*		NM_001038705	NP_001033794	Q86SP6	GP149_HUMAN	G protein-coupled receptor 149	593	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(6)	6			LUSC - Lung squamous cell carcinoma(72;0.114)|Lung(72;0.173)			CTTTTGGATCGATAGACTTCT	0.418													41	88					0	0	1	0	0
SLITRK3	22865	broad.mit.edu	37	3	164906724	164906724	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:164906724A>G	uc003fej.3	-	2	2339	c.1895T>C	c.(1894-1896)CTT>CCT	p.L632P	SLITRK3_uc003fek.2_Missense_Mutation_p.L632P	NM_014926	NP_055741	O94933	SLIK3_HUMAN	slit and trk like 3 protein precursor	632	Extracellular (Potential).					integral to membrane				ovary(6)|skin(3)|pancreas(1)	10						TGCCCCAATAAGGTGAGAATC	0.532										HNSCC(40;0.11)			5	24					0	0	1	0	0
SERPINI2	5276	broad.mit.edu	37	3	167167182	167167182	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:167167182C>T	uc003fer.1	-	6	1031	c.973G>A	c.(973-975)GAA>AAA	p.E325K	SERPINI2_uc003fes.1_Missense_Mutation_p.E335K|SERPINI2_uc003fet.1_Missense_Mutation_p.E325K	NM_006217	NP_006208	O75830	SPI2_HUMAN	serpin peptidase inhibitor, clade I (pancpin),	325					cellular component movement|regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			skin(2)|urinary_tract(1)	3						ACATACACTTCAGATGAATCT	0.313													9	22					0	0	1	0	0
WDR49	151790	broad.mit.edu	37	3	167277932	167277932	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:167277932C>T	uc003fev.1	-	5	877	c.571G>A	c.(571-573)GGC>AGC	p.G191S	WDR49_uc003feu.1_Missense_Mutation_p.G16S|WDR49_uc011bpd.1_Missense_Mutation_p.G244S|WDR49_uc003few.1_Intron	NM_178824	NP_849146	Q8IV35	WDR49_HUMAN	WD repeat domain 49	191	WD 4.									large_intestine(1)|ovary(1)|skin(1)	3						TCTGCGTTGCCGTGGCAACCA	0.453													37	69					0	0	1	0	0
LRRIQ4	344657	broad.mit.edu	37	3	169540103	169540103	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:169540103G>A	uc003fgb.2	+	1	394	c.394G>A	c.(394-396)GAA>AAA	p.E132K		NM_001080460	NP_001073929	A6NIV6	LRIQ4_HUMAN	leucine-rich repeats and IQ motif containing 4	132	LRR 5.										0						CGACCTGAAGGAAATTCCCGT	0.557													21	61					0	0	1	0	0
SLC2A2	6514	broad.mit.edu	37	3	170716067	170716067	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:170716067C>T	uc003fhe.1	-	10	1598	c.1289G>A	c.(1288-1290)GGA>GAA	p.G430E	SLC2A2_uc003fhf.1_Missense_Mutation_p.G257E|SLC2A2_uc011bpu.1_Missense_Mutation_p.G303E	NM_000340	NP_000331	P11168	GTR2_HUMAN	solute carrier family 2 (facilitated glucose	430	Cytoplasmic (Potential).				carbohydrate metabolic process|cellular lipid metabolic process|endocrine pancreas development|energy reserve metabolic process|regulation of insulin secretion	integral to plasma membrane|membrane fraction	D-glucose transmembrane transporter activity			ovary(1)|central_nervous_system(1)	2	all_cancers(22;1.41e-19)|all_lung(20;1.59e-15)|Lung NSC(18;7.08e-15)|Ovarian(172;0.00197)|Breast(254;0.122)		LUSC - Lung squamous cell carcinoma(14;1.1e-14)|Lung(28;2.99e-14)			AGGACGTGGTCCTTGACTGAA	0.468													34	53					0	0	1	0	0
SPATA16	83893	broad.mit.edu	37	3	172835511	172835511	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:172835511C>T	uc003fin.3	-	2	169	c.11G>A	c.(10-12)GGA>GAA	p.G4E		NM_031955	NP_114161	Q9BXB7	SPT16_HUMAN	spermatogenesis associated 16	4					cell differentiation|multicellular organismal development|spermatogenesis	Golgi apparatus	binding			ovary(2)|skin(1)	3	Ovarian(172;0.00319)|Breast(254;0.197)		LUSC - Lung squamous cell carcinoma(14;1.48e-14)|Lung(28;6.63e-14)			CCTACTGCTTCCTGCATCCAT	0.418													35	80					0	0	1	0	0
PIK3CA	5290	broad.mit.edu	37	3	178941890	178941890	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:178941890G>A	uc003fjk.2	+	15	2366	c.2209G>A	c.(2209-2211)GAG>AAG	p.E737K		NM_006218	NP_006209	P42336	PK3CA_HUMAN	phosphoinositide-3-kinase, catalytic, alpha	737					epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|T cell costimulation|T cell receptor signaling pathway		1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity			breast(1564)|large_intestine(776)|endometrium(246)|urinary_tract(195)|ovary(141)|skin(112)|stomach(98)|thyroid(77)|central_nervous_system(69)|lung(65)|upper_aerodigestive_tract(58)|haematopoietic_and_lymphoid_tissue(27)|cervix(25)|biliary_tract(22)|liver(20)|oesophagus(17)|pancreas(11)|penis(8)|pituitary(8)|autonomic_ganglia(4)|prostate(3)|kidney(2)|meninges(1)|eye(1)|NS(1)|soft_tissue(1)|bone(1)	3553	all_cancers(143;1.19e-17)|Ovarian(172;0.00769)|Breast(254;0.155)		OV - Ovarian serous cystadenocarcinoma(80;9.59e-28)|GBM - Glioblastoma multiforme(14;0.003)|BRCA - Breast invasive adenocarcinoma(182;0.0282)			GTTTTTAGTTGAGCAAATGAG	0.388		57	Mis		colorectal|gastric|gliobastoma|breast					HNSCC(19;0.045)|TSP Lung(28;0.18)			24	40					0	0	1	0	0
MFN1	55669	broad.mit.edu	37	3	179096507	179096507	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:179096507C>T	uc003fjs.2	+	14	1693	c.1567C>T	c.(1567-1569)CGT>TGT	p.R523C	MFN1_uc010hxb.2_RNA|MFN1_uc003fjt.2_Missense_Mutation_p.P551S|MFN1_uc010hxc.2_Intron	NM_033540	NP_284941	Q8IWA4	MFN1_HUMAN	mitofusin 1	523	Cytoplasmic (Potential).				mitochondrial fusion	integral to membrane|mitochondrial outer membrane	GTP binding|GTPase activity			ovary(2)|large_intestine(1)	3	all_cancers(143;1.67e-16)|Ovarian(172;0.0172)|Breast(254;0.155)		OV - Ovarian serous cystadenocarcinoma(80;5.78e-26)|GBM - Glioblastoma multiforme(14;0.00225)|BRCA - Breast invasive adenocarcinoma(182;0.0923)			TATTGTATTTCCTTTTTCCCT	0.388													18	45					0	0	1	0	0
TTC14	151613	broad.mit.edu	37	3	180320171	180320171	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:180320171C>T	uc003fkk.2	+	1	254	c.122C>T	c.(121-123)CCA>CTA	p.P41L	TTC14_uc003fkl.2_Missense_Mutation_p.P41L|TTC14_uc003fkm.2_Missense_Mutation_p.P41L	NM_133462	NP_597719	Q96N46	TTC14_HUMAN	tetratricopeptide repeat domain 14 isoform a	41							RNA binding			ovary(1)	1	all_cancers(143;9.31e-15)|Ovarian(172;0.0212)		OV - Ovarian serous cystadenocarcinoma(80;5.62e-23)|GBM - Glioblastoma multiforme(14;0.000558)			GCCGCCGAGCCAGCCCGGGGC	0.652													4	19					0	0	1	0	0
YEATS2	55689	broad.mit.edu	37	3	183446572	183446572	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:183446572C>T	uc003fly.2	+	7	940	c.745C>T	c.(745-747)CAT>TAT	p.H249Y		NM_018023	NP_060493	Q9ULM3	YETS2_HUMAN	YEATS domain containing 2	249	YEATS.				histone H3 acetylation|negative regulation of transcription from RNA polymerase II promoter	Ada2/Gcn5/Ada3 transcription activator complex	TBP-class protein binding			ovary(3)|large_intestine(1)	4	all_cancers(143;6.55e-10)|Ovarian(172;0.0303)		all cancers(12;2.38e-42)|Epithelial(37;1.9e-36)|OV - Ovarian serous cystadenocarcinoma(80;6.48e-22)			CAGCATTAATCATTTTGTCAA	0.413													20	42					0	0	1	0	0
CHRD	8646	broad.mit.edu	37	3	184107206	184107206	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:184107206C>A	uc003fov.2	+	23	3110	c.2864C>A	c.(2863-2865)TCT>TAT	p.S955Y	CHRD_uc003fow.2_Missense_Mutation_p.S585Y|CHRD_uc003fox.2_Missense_Mutation_p.S954Y|CHRD_uc003foy.2_Missense_Mutation_p.S585Y|CHRD_uc010hyc.2_Missense_Mutation_p.S545Y|CHRD_uc011brr.1_Missense_Mutation_p.S497Y	NM_003741	NP_003732	Q9H2X0	CHRD_HUMAN	chordin precursor	955					BMP signaling pathway involved in spinal cord dorsal/ventral patterning|floor plate development|negative regulation of BMP signaling pathway|negative regulation of cell migration|positive regulation of cell adhesion|skeletal system development	extracellular space	cytokine binding			skin(2)|ovary(1)	3	all_cancers(143;6.33e-11)|Ovarian(172;0.0339)		Epithelial(37;4.96e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			GCCGAAGGCTCTTAGGGAGCA	0.597													14	24					0.00400662	0.00402271	1	1	0
DGKG	1608	broad.mit.edu	37	3	185997655	185997655	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:185997655C>T	uc003fqa.2	-	9	1314	c.777G>A	c.(775-777)CTG>CTA	p.L259L	DGKG_uc003fqb.2_Silent_p.L259L|DGKG_uc003fqc.2_Silent_p.L259L|DGKG_uc011brx.1_Silent_p.L259L	NM_001346	NP_001337	P49619	DGKG_HUMAN	diacylglycerol kinase gamma isoform 1	259					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	cytoplasm|plasma membrane	ATP binding|calcium ion binding|diacylglycerol kinase activity			breast(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5	all_cancers(143;3.26e-12)|Ovarian(172;0.0315)|Breast(254;0.247)		OV - Ovarian serous cystadenocarcinoma(80;1.93e-20)	GBM - Glioblastoma multiforme(93;0.0657)	Phosphatidylserine(DB00144)	CATCCATCCCCAGGAGGACCA	0.498													40	69					0	0	1	0	0
FETUB	26998	broad.mit.edu	37	3	186370169	186370169	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:186370169C>T	uc010hyq.2	+	8	1159	c.898C>T	c.(898-900)CCA>TCA	p.P300S	FETUB_uc011brz.1_Missense_Mutation_p.P152S|FETUB_uc003fqn.2_Missense_Mutation_p.P300S|FETUB_uc003fqo.2_Missense_Mutation_p.P195S|FETUB_uc010hyr.2_Missense_Mutation_p.P263S|FETUB_uc010hys.2_Missense_Mutation_p.P152S|FETUB_uc003fqp.3_Missense_Mutation_p.P235S	NM_014375	NP_055190	Q9UGM5	FETUB_HUMAN	fetuin B precursor	300						extracellular space	cysteine-type endopeptidase inhibitor activity			ovary(1)|lung(1)	2	all_cancers(143;6.64e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;5.73e-20)	GBM - Glioblastoma multiforme(93;0.0479)		CAAAGCTGGGCCAAGAGGATC	0.498													34	100					0	0	1	0	0
KNG1	3827	broad.mit.edu	37	3	186459464	186459464	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:186459464C>T	uc011bsa.1	+	10	1491	c.1279C>T	c.(1279-1281)CGT>TGT	p.R427C	KNG1_uc003fqr.2_Intron	NM_001102416	NP_001095886	P01042	KNG1_HUMAN	kininogen 1 isoform 1	427	|His-rich.				blood coagulation, intrinsic pathway|elevation of cytosolic calcium ion concentration|inflammatory response|negative regulation of blood coagulation|negative regulation of cell adhesion|platelet activation|platelet degranulation|positive regulation of apoptosis|positive regulation of renal sodium excretion|positive regulation of urine volume|smooth muscle contraction|vasodilation	extracellular space|plasma membrane|platelet alpha granule lumen	cysteine-type endopeptidase inhibitor activity|heparin binding|receptor binding|zinc ion binding			skin(1)	1	all_cancers(143;8.96e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;4.12e-20)	GBM - Glioblastoma multiforme(93;0.0798)	Ouabain(DB01092)	AGGGCATACTCGTAGACATGA	0.468													27	41					0	0	1	0	0
PYDC2	152138	broad.mit.edu	37	3	191179128	191179128	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:191179128C>T	uc011bso.1	+	1	177	c.177C>T	c.(175-177)TTC>TTT	p.F59F		NM_001083308	NP_001076777	Q56P42	PYDC2_HUMAN	pyrin domain containing 2	59	DAPIN.					cytoplasm|nucleus					0						TAGAAATCTTCACCAGCCACT	0.512													33	55					0	0	1	0	0
ATP13A4	84239	broad.mit.edu	37	3	193176957	193176957	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:193176957C>T	uc003ftd.2	-	14	1695	c.1587G>A	c.(1585-1587)GCG>GCA	p.A529A	ATP13A4_uc003fte.1_Silent_p.A529A|ATP13A4_uc011bsr.1_5'UTR|ATP13A4_uc010hzi.2_RNA|ATP13A4_uc003ftf.3_Silent_p.A235A	NM_032279	NP_115655	Q4VNC1	AT134_HUMAN	ATPase type 13A4	529	Extracellular (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(2)	2	all_cancers(143;1.76e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;2.72e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;0.000109)		AGCTGGCCATCGCTGCACACA	0.542													31	49					0	0	1	0	0
CPN2	1370	broad.mit.edu	37	3	194062528	194062528	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:194062528C>T	uc003fts.2	-	2	994	c.904G>A	c.(904-906)GAG>AAG	p.E302K		NM_001080513	NP_001073982	P22792	CPN2_HUMAN	carboxypeptidase N, polypeptide 2	302	LRR 9.				protein stabilization	extracellular region	enzyme regulator activity			ovary(5)	5	all_cancers(143;5.31e-09)|Ovarian(172;0.0634)		OV - Ovarian serous cystadenocarcinoma(49;2.2e-17)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;4.65e-05)		GCGACAGTCTCCAGCTGGTTA	0.587													21	33					0	0	1	0	0
MUC4	4585	broad.mit.edu	37	3	195477772	195477772	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:195477772C>T	uc011bto.1	-	24	15935	c.15475G>A	c.(15475-15477)GAT>AAT	p.D5159N	MUC4_uc010hzq.2_Missense_Mutation_p.D144N|MUC4_uc003fuz.2_Missense_Mutation_p.D885N|MUC4_uc003fva.2_Missense_Mutation_p.D767N|MUC4_uc003fvb.2_Missense_Mutation_p.D803N|MUC4_uc003fvc.2_RNA|MUC4_uc003fvd.2_RNA|MUC4_uc003fve.2_Missense_Mutation_p.D803N|MUC4_uc010hzr.2_RNA|MUC4_uc011btf.1_Missense_Mutation_p.D767N|MUC4_uc011btg.1_RNA|MUC4_uc011bth.1_Missense_Mutation_p.D851N|MUC4_uc011bti.1_Missense_Mutation_p.D851N|MUC4_uc011btj.1_Missense_Mutation_p.D1028N|MUC4_uc011btk.1_Missense_Mutation_p.D767N|MUC4_uc011btl.1_Missense_Mutation_p.D796N|MUC4_uc011btm.1_Missense_Mutation_p.D976N|MUC4_uc011btn.1_Missense_Mutation_p.D767N|MUC4_uc003fvo.2_Missense_Mutation_p.D1051N|MUC4_uc003fvp.2_Missense_Mutation_p.D1000N	NM_018406	NP_060876	Q99102	MUC4_HUMAN	mucin 4 isoform a	2044					cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity				0	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		GCTGTCACATCGCGCACGTCT	0.622													21	26					0	0	1	0	0
MUC4	4585	broad.mit.edu	37	3	195501115	195501115	+	Silent	SNP	C	T	T	rs141952289		TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:195501115C>T	uc011bto.1	-	5	13081	c.12621G>A	c.(12619-12621)GTG>GTA	p.V4207V	MUC4_uc003fuz.2_Nonsense_Mutation_p.W15*|MUC4_uc003fva.2_5'UTR|MUC4_uc003fvb.2_5'UTR|MUC4_uc003fvc.2_RNA|MUC4_uc003fvd.2_RNA|MUC4_uc003fve.2_5'UTR|MUC4_uc010hzr.2_RNA|MUC4_uc011btf.1_5'UTR|MUC4_uc011btg.1_RNA|MUC4_uc011bth.1_5'UTR|MUC4_uc011bti.1_5'UTR|MUC4_uc011btj.1_Silent_p.V76V|MUC4_uc011btk.1_5'UTR|MUC4_uc011btl.1_5'UTR|MUC4_uc011btm.1_Silent_p.V76V|MUC4_uc011btn.1_5'UTR|MUC4_uc003fvo.2_Silent_p.V99V|MUC4_uc003fvp.2_Silent_p.V48V|MUC4_uc010hzu.1_Silent_p.V947V	NM_018406	NP_060876	Q99102	MUC4_HUMAN	mucin 4 isoform a	1092					cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity				0	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		AGGTGAAGTCCACGGTCCTCC	0.657													19	33					0	0	1	0	0
TNK2	10188	broad.mit.edu	37	3	195605199	195605199	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr3:195605199C>A	uc003fvu.1	-	9	1724	c.1181G>T	c.(1180-1182)CGG>CTG	p.R394L	TNK2_uc003fvs.1_Missense_Mutation_p.R426L|TNK2_uc003fvt.1_Missense_Mutation_p.R457L|TNK2_uc010hzw.1_RNA|TNK2_uc003fvv.1_Missense_Mutation_p.R224L	NM_005781	NP_005772	Q07912	ACK1_HUMAN	tyrosine kinase, non-receptor, 2 isoform 1	394	SH3.			Missing (in Ref. 4; AAH08884).	positive regulation of peptidyl-tyrosine phosphorylation|protein ubiquitination|small GTPase mediated signal transduction	adherens junction|cytoplasmic vesicle membrane|endosome|nucleus	ATP binding|GTPase inhibitor activity|metal ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding			ovary(3)|central_nervous_system(3)|lung(2)|stomach(1)|skin(1)	10	all_cancers(143;6.48e-09)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;1.46e-22)|OV - Ovarian serous cystadenocarcinoma(49;8.3e-19)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;0.000757)	Adenosine triphosphate(DB00171)	CTGAAGGGCCCGCATGTCTGT	0.617													4	151					0.150653	0.150955	1	1	0
TACC3	10460	broad.mit.edu	37	4	1730261	1730261	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:1730261C>T	uc003gdo.2	+	4	1240	c.1132C>T	c.(1132-1134)CCG>TCG	p.P378S	TACC3_uc010ibz.2_Missense_Mutation_p.P378S|TACC3_uc003gdp.2_Intron|TACC3_uc010ica.2_5'Flank	NM_006342	NP_006333	Q9Y6A5	TACC3_HUMAN	transforming, acidic coiled-coil containing	378						centrosome				ovary(1)|central_nervous_system(1)	2		Breast(71;0.212)|all_epithelial(65;0.241)	OV - Ovarian serous cystadenocarcinoma(23;0.00765)|Epithelial(3;0.0126)			GCAAAAGGCCCCGCAGGAGGT	0.637													8	46					0	0	1	0	0
TNIP2	79155	broad.mit.edu	37	4	2744022	2744022	+	Nonsense_Mutation	SNP	C	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:2744022C>A	uc003gfg.2	-	6	1339	c.1252G>T	c.(1252-1254)GAA>TAA	p.E418*	TNIP2_uc003gff.2_Nonsense_Mutation_p.E311*|TNIP2_uc003gfh.2_Nonsense_Mutation_p.E335*	NM_024309	NP_077285	Q8NFZ5	TNIP2_HUMAN	A20-binding inhibitor of NF-kappaB activation 2	418						cytosol	protein binding			central_nervous_system(1)	1				UCEC - Uterine corpus endometrioid carcinoma (64;0.168)		AGGAGCTCTTCCCCTTGCTCG	0.677													6	13					1	1	1	1	0
CRMP1	1400	broad.mit.edu	37	4	5857877	5857877	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:5857877C>T	uc003gip.2	-	5	572	c.471G>A	c.(469-471)CAG>CAA	p.Q157Q	CRMP1_uc003gin.1_Silent_p.Q69Q|CRMP1_uc003giq.2_Silent_p.Q157Q|CRMP1_uc003gir.2_Silent_p.Q152Q|CRMP1_uc003gis.2_Silent_p.Q271Q	NM_001313	NP_001304	Q14194	DPYL1_HUMAN	collapsin response mediator protein 1 isoform 2	157					axon guidance|pyrimidine base catabolic process	cytosol|microtubule organizing center|spindle	dihydropyrimidinase activity|protein binding			ovary(2)	2				Colorectal(103;0.0721)		GACCTTTGTCCTGCACCAGCA	0.517													10	54					0	0	1	0	0
JAKMIP1	152789	broad.mit.edu	37	4	6066641	6066641	+	Missense_Mutation	SNP	C	T	T	rs35130879		TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:6066641C>T	uc003giu.3	-	9	1673	c.1397G>A	c.(1396-1398)AGG>AAG	p.R466K	JAKMIP1_uc010idb.1_Missense_Mutation_p.R466K|JAKMIP1_uc010idc.1_Missense_Mutation_p.R281K|JAKMIP1_uc010idd.1_Missense_Mutation_p.R466K|JAKMIP1_uc011bwc.1_Missense_Mutation_p.R301K|JAKMIP1_uc003giv.3_Missense_Mutation_p.R466K|JAKMIP1_uc010ide.2_Missense_Mutation_p.R466K	NM_144720	NP_653321	Q96N16	JKIP1_HUMAN	janus kinase and microtubule interacting protein	466	Mediates interaction with TYK2 and GABBR1.				protein transport	cytoplasm|membrane|microtubule|peripheral to membrane of membrane fraction|ribonucleoprotein complex	GABA receptor binding|RNA binding			large_intestine(1)|pancreas(1)|ovary(1)|skin(1)	4						GGCTGGGGTCCTGTCTGTCCT	0.532													12	23					0	0	1	0	0
SH3TC1	54436	broad.mit.edu	37	4	8216228	8216228	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:8216228C>T	uc003gkv.3	+	5	503	c.402C>T	c.(400-402)ATC>ATT	p.I134I	SH3TC1_uc003gkw.3_Silent_p.I58I|SH3TC1_uc003gkx.3_RNA	NM_018986	NP_061859	Q8TE82	S3TC1_HUMAN	SH3 domain and tetratricopeptide repeats 1	134							binding			large_intestine(2)|pancreas(1)	3						TGCTGTCCATCCACAGTGACC	0.512													12	42					0	0	1	0	0
DRD5	1816	broad.mit.edu	37	4	9785081	9785081	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:9785081C>T	uc003gmb.3	+	1	1824	c.1428C>T	c.(1426-1428)TTC>TTT	p.F476F		NM_000798	NP_000789	P21918	DRD5_HUMAN	dopamine receptor D5	476	Cytoplasmic (Potential).				activation of adenylate cyclase activity by dopamine receptor signaling pathway|activation of phospholipase C activity by dopamine receptor signaling pathway|cellular calcium ion homeostasis|negative regulation of NAD(P)H oxidase activity|reactive oxygen species metabolic process|synaptic transmission, dopaminergic	integral to plasma membrane				skin(1)	1					Apomorphine(DB00714)|Carphenazine(DB01038)|Fenoldopam(DB00800)|Zuclopenthixol(DB01624)	CGAATGGATTCCATTAAACTG	0.498													13	15					0	0	1	0	0
SLIT2	9353	broad.mit.edu	37	4	20597426	20597427	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:20597426_20597427GG>AA	uc003gpr.1	+	31	3493_3494	c.3289_3290GG>AA	c.(3289-3291)GGC>AAC	p.G1097N	SLIT2_uc003gps.1_Missense_Mutation_p.G1089N	NM_004787	NP_004778	O94813	SLIT2_HUMAN	slit homolog 2 precursor	1097	EGF-like 5; calcium-binding (Potential).				apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding			central_nervous_system(4)|skin(4)|ovary(3)	11						TGCAGTGAACGGCTATACGTGC	0.356													39	47					0	0	1	0	0
SLIT2	9353	broad.mit.edu	37	4	20597447	20597447	+	Missense_Mutation	SNP	G	A	A	rs80248215	byFrequency	TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:20597447G>A	uc003gpr.1	+	31	3514	c.3310G>A	c.(3310-3312)GAA>AAA	p.E1104K	SLIT2_uc003gps.1_Missense_Mutation_p.E1096K	NM_004787	NP_004778	O94813	SLIT2_HUMAN	slit homolog 2 precursor	1104	EGF-like 5; calcium-binding (Potential).				apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding			central_nervous_system(4)|skin(4)|ovary(3)	11						CATATGCCCCGAAGGTTACAG	0.294													16	50					0	0	1	0	0
PPARGC1A	10891	broad.mit.edu	37	4	23815318	23815318	+	Silent	SNP	A	G	G			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:23815318A>G	uc003gqs.2	-	8	1908	c.1788T>C	c.(1786-1788)TCT>TCC	p.S596S	PPARGC1A_uc003gqt.2_RNA|PPARGC1A_uc011bxp.1_RNA|PPARGC1A_uc010ier.1_RNA	NM_013261	NP_037393	Q9UBK2	PRGC1_HUMAN	peroxisome proliferator-activated receptor	596	Arg/Ser-rich.				androgen receptor signaling pathway|brown fat cell differentiation|cellular glucose homeostasis|digestion|fatty acid oxidation|gluconeogenesis|mitochondrion organization|mRNA processing|neuron death|positive regulation of fatty acid oxidation|positive regulation of gluconeogenesis|positive regulation of histone acetylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|protein complex assembly|protein stabilization|response to muscle activity|response to starvation|RNA splicing|temperature homeostasis|transcription initiation from RNA polymerase II promoter	DNA-directed RNA polymerase II, core complex	androgen receptor binding|DNA binding|ligand-dependent nuclear receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|nucleotide binding|RNA binding|RNA polymerase II transcription cofactor activity|transcription factor binding			ovary(2)|lung(2)|kidney(2)|skin(2)	8		Breast(46;0.0503)				TTTACCTTGAAGAGGATCTAC	0.388													22	17					0	0	1	0	0
PPARGC1A	10891	broad.mit.edu	37	4	23815737	23815737	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:23815737C>T	uc003gqs.2	-	8	1489	c.1369G>A	c.(1369-1371)GAA>AAA	p.E457K	PPARGC1A_uc003gqt.2_RNA|PPARGC1A_uc011bxp.1_RNA|PPARGC1A_uc010ier.1_RNA	NM_013261	NP_037393	Q9UBK2	PRGC1_HUMAN	peroxisome proliferator-activated receptor	457					androgen receptor signaling pathway|brown fat cell differentiation|cellular glucose homeostasis|digestion|fatty acid oxidation|gluconeogenesis|mitochondrion organization|mRNA processing|neuron death|positive regulation of fatty acid oxidation|positive regulation of gluconeogenesis|positive regulation of histone acetylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|protein complex assembly|protein stabilization|response to muscle activity|response to starvation|RNA splicing|temperature homeostasis|transcription initiation from RNA polymerase II promoter	DNA-directed RNA polymerase II, core complex	androgen receptor binding|DNA binding|ligand-dependent nuclear receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|nucleotide binding|RNA binding|RNA polymerase II transcription cofactor activity|transcription factor binding			ovary(2)|lung(2)|kidney(2)|skin(2)	8		Breast(46;0.0503)				GCTCGGATTTCCTGGTCTTGG	0.507													25	32					0	0	1	0	0
STIM2	57620	broad.mit.edu	37	4	27024254	27024254	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:27024254C>T	uc003gsh.3	+	13	2378	c.2162C>T	c.(2161-2163)TCA>TTA	p.S721L	STIM2_uc003gsg.3_Missense_Mutation_p.S713L|STIM2_uc010iex.2_3'UTR|STIM2_uc010iey.2_3'UTR	NM_020860	NP_065911	Q9P246	STIM2_HUMAN	stromal interaction molecule 2	626	Cytoplasmic (Potential).				activation of store-operated calcium channel activity|calcium ion transport|cellular calcium ion homeostasis|negative regulation of calcium ion transport via store-operated calcium channel activity	endoplasmic reticulum membrane|integral to membrane|plasma membrane	calcium channel regulator activity|calcium ion binding|protein binding			central_nervous_system(1)|skin(1)	2		Breast(46;0.0503)				CGAAAGATATCAAGAGATGAG	0.468													24	69					0	0	1	0	0
ARAP2	116984	broad.mit.edu	37	4	36134888	36134888	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:36134888G>A	uc003gsq.1	-	20	3725	c.3387C>T	c.(3385-3387)CCC>CCT	p.P1129P		NM_015230	NP_056045	Q8WZ64	ARAP2_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	1129	Rho-GAP.				regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytosol	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						TCACTATAATGGGAACGTCAT	0.383													17	22					0	0	1	0	0
PDS5A	23244	broad.mit.edu	37	4	39881398	39881398	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:39881398C>T	uc003guv.3	-	18	2482	c.1942G>A	c.(1942-1944)GAG>AAG	p.E648K	PDS5A_uc010ifo.2_Missense_Mutation_p.E608K	NM_001100399	NP_001093869	Q29RF7	PDS5A_HUMAN	PDS5, regulator of cohesion maintenance, homolog	648					cell division|mitosis|negative regulation of DNA replication	chromatin|nucleus	identical protein binding				0						CTTACACCCTCCTCTTCATCA	0.363													27	36					0	0	1	0	0
RBM47	54502	broad.mit.edu	37	4	40440317	40440317	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:40440317G>A	uc003gvc.2	-	4	1304	c.594C>T	c.(592-594)TTC>TTT	p.F198F	RBM47_uc003gvd.2_Silent_p.F198F|RBM47_uc003gve.2_RNA|RBM47_uc011bys.1_Silent_p.F160F|RBM47_uc003gvg.1_Silent_p.F198F	NM_001098634	NP_001092104	A0AV96	RBM47_HUMAN	RNA binding motif protein 47 isoform a	198	RRM 2.					nucleus	nucleotide binding|RNA binding			breast(3)	3						CGTACTCCACGAAGGCGAAGC	0.662													37	24					0	0	1	0	0
NSUN7	79730	broad.mit.edu	37	4	40778159	40778159	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:40778159G>A	uc003gvj.3	+	7	1414	c.919G>A	c.(919-921)GTT>ATT	p.V307I	NSUN7_uc003gvi.3_Missense_Mutation_p.V307I	NM_024677	NP_078953			NOL1/NOP2/Sun domain family, member 7												0						ATGGTACACAGTTTCCCACAT	0.368													5	26					0	0	1	0	0
GABRG1	2565	broad.mit.edu	37	4	46066497	46066497	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:46066497G>A	uc003gxb.2	-	5	738	c.586C>T	c.(586-588)CCC>TCC	p.P196S		NM_173536	NP_775807	Q8N1C3	GBRG1_HUMAN	gamma-aminobutyric acid A receptor, gamma 1	196	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity			ovary(2)	2				Lung(65;0.106)|LUSC - Lung squamous cell carcinoma(721;0.23)		TCATCCATGGGAAAGTTATGA	0.269													15	71					0	0	1	0	0
GABRG1	2565	broad.mit.edu	37	4	46125833	46125833	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:46125833C>T	uc003gxb.2	-	1	250	c.98G>A	c.(97-99)GGA>GAA	p.G33E		NM_173536	NP_775807	Q8N1C3	GBRG1_HUMAN	gamma-aminobutyric acid A receptor, gamma 1	33					gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity			ovary(2)	2				Lung(65;0.106)|LUSC - Lung squamous cell carcinoma(721;0.23)		TCACCAGTTTCCCAAATGCAG	0.408													25	28					0	0	1	0	0
TXK	7294	broad.mit.edu	37	4	48073661	48073661	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:48073661C>T	uc003gxx.3	-	14	1474	c.1388G>A	c.(1387-1389)GGA>GAA	p.G463E	TXK_uc010igj.2_RNA|TXK_uc011bzj.1_Missense_Mutation_p.G150E	NM_003328	NP_003319	P42681	TXK_HUMAN	TXK tyrosine kinase	463	Protein kinase.					cytoplasm	ATP binding|non-membrane spanning protein tyrosine kinase activity				0						AGGCATTTTTCCTTCTGTAAA	0.383													29	51					0	0	1	0	0
CWH43	80157	broad.mit.edu	37	4	49009302	49009302	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:49009302C>T	uc003gyv.2	+	8	1327	c.1145C>T	c.(1144-1146)TCT>TTT	p.S382F	CWH43_uc011bzl.1_Missense_Mutation_p.S355F	NM_025087	NP_079363	Q9H720	PG2IP_HUMAN	cell wall biogenesis 43 C-terminal homolog	382					GPI anchor biosynthetic process	integral to membrane				skin(2)|ovary(1)	3						AAAAACAGTTCTAAAGTGCTT	0.274													10	28					0	0	1	0	0
SPATA18	132671	broad.mit.edu	37	4	52926998	52926998	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:52926998C>T	uc003gzl.2	+	3	522	c.244C>T	c.(244-246)CTG>TTG	p.L82L	SPATA18_uc010igl.1_RNA|SPATA18_uc011bzq.1_Silent_p.L82L|SPATA18_uc003gzk.1_Silent_p.L82L	NM_145263	NP_660306	Q8TC71	MIEAP_HUMAN	spermatogenesis associated 18 homolog	82					mitochondrial protein catabolic process|mitochondrion degradation by induced vacuole formation|response to DNA damage stimulus	mitochondrial outer membrane	protein binding			ovary(2)|skin(2)	4			GBM - Glioblastoma multiforme(4;1.77e-13)|LUSC - Lung squamous cell carcinoma(32;0.00204)			TTTGCCTTGGCTGGAGGCTTC	0.383													11	59					0	0	1	0	0
SPATA18	132671	broad.mit.edu	37	4	52945033	52945033	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:52945033C>T	uc003gzl.2	+	8	1431	c.1153C>T	c.(1153-1155)CTA>TTA	p.L385L	SPATA18_uc010igl.1_RNA|SPATA18_uc011bzq.1_Silent_p.L353L|SPATA18_uc003gzk.1_Silent_p.L385L	NM_145263	NP_660306	Q8TC71	MIEAP_HUMAN	spermatogenesis associated 18 homolog	385					mitochondrial protein catabolic process|mitochondrion degradation by induced vacuole formation|response to DNA damage stimulus	mitochondrial outer membrane	protein binding			ovary(2)|skin(2)	4			GBM - Glioblastoma multiforme(4;1.77e-13)|LUSC - Lung squamous cell carcinoma(32;0.00204)			TCATCTTGATCTATATGATTC	0.378													14	66					0	0	1	0	0
PDGFRA	5156	broad.mit.edu	37	4	55140786	55140786	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:55140786G>A	uc003han.3	+	11	1978	c.1647G>A	c.(1645-1647)TGG>TGA	p.W549*	PDGFRA_uc003haa.2_Intron|PDGFRA_uc010igq.1_Nonsense_Mutation_p.W443*|PDGFRA_uc003ham.2_RNA|PDGFRA_uc003hao.1_5'Flank	NM_006206	NP_006197	P16234	PGFRA_HUMAN	platelet-derived growth factor receptor alpha	549	Helical; (Potential).				cardiac myofibril assembly|cell activation|luteinization|metanephric glomerular capillary formation|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of DNA replication|positive regulation of fibroblast proliferation|protein autophosphorylation|retina vasculature development in camera-type eye	cytoplasm|integral to plasma membrane|nucleus	ATP binding|platelet-derived growth factor alpha-receptor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|protein homodimerization activity|vascular endothelial growth factor receptor activity	p.W549*(1)		soft_tissue(572)|small_intestine(40)|stomach(16)|lung(16)|central_nervous_system(13)|haematopoietic_and_lymphoid_tissue(7)|skin(3)|ovary(3)|gastrointestinal_tract_(site_indeterminate)(1)|autonomic_ganglia(1)|prostate(1)|bone(1)	674	all_cancers(7;0.000425)|all_lung(4;0.000343)|Lung NSC(11;0.000467)|all_epithelial(27;0.0131)|all_neural(26;0.0209)|Glioma(25;0.08)		GBM - Glioblastoma multiforme(1;4.18e-71)|all cancers(1;4.76e-45)|LUSC - Lung squamous cell carcinoma(32;0.00256)		Becaplermin(DB00102)|Imatinib(DB00619)|Sunitinib(DB01268)	TTGTCATTTGGAAACAGGTAG	0.358			Mis|O|T	FIP1L1	GIST|idiopathic hypereosinophilic syndrome				Gastrointestinal_Stromal_Tumors_Sporadic_Multiple_Primary|Familial_Intestinal_Neurofibromatosis	TSP Lung(21;0.16)			13	88					0	0	1	0	0
KDR	3791	broad.mit.edu	37	4	55948779	55948779	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:55948779C>T	uc003has.2	-	28	3988	c.3686G>A	c.(3685-3687)CGA>CAA	p.R1229Q	KDR_uc003hat.1_Missense_Mutation_p.R1229Q	NM_002253	NP_002244	P35968	VGFR2_HUMAN	kinase insert domain receptor precursor	1229	Cytoplasmic (Potential).				angiogenesis|cell differentiation|interspecies interaction between organisms|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of focal adhesion assembly|positive regulation of positive chemotaxis|regulation of cell shape	integral to plasma membrane	ATP binding|growth factor binding|Hsp90 protein binding|integrin binding|receptor signaling protein tyrosine kinase activity|vascular endothelial growth factor receptor activity			lung(16)|soft_tissue(4)|central_nervous_system(4)|large_intestine(2)|stomach(2)|skin(2)|ovary(2)|kidney(1)	33	all_cancers(7;0.0255)|all_lung(4;0.00175)|Lung NSC(11;0.00384)|all_epithelial(27;0.034)|Glioma(25;0.08)|all_neural(26;0.101)		Epithelial(7;0.189)		Sorafenib(DB00398)|Sunitinib(DB01268)	CCGGCTCTTTCGCTTACTGTT	0.358			Mis		NSCLC|angiosarcoma				Familial_Infantile_Hemangioma	TSP Lung(20;0.16)			16	57					0	0	1	0	0
TMPRSS11B	132724	broad.mit.edu	37	4	69093756	69093756	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:69093756G>A	uc003hdw.3	-	10	1260	c.1124C>T	c.(1123-1125)TCC>TTC	p.S375F		NM_182502	NP_872308	Q86T26	TM11B_HUMAN	transmembrane protease, serine 11B	375	Peptidase S1.|Extracellular (Potential).				proteolysis	extracellular region|integral to plasma membrane	serine-type endopeptidase activity			ovary(1)	1						GATATTTCTGGAATCAGGGTA	0.383													4	22					0	0	1	0	0
Unknown	0	broad.mit.edu	37	4	69337254	69337254	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:69337254G>A	uc003hdz.3	+	5	467	c.403G>A	c.(403-405)GAT>AAT	p.D135N		NM_014058	NP_054777			transmembrane protease, serine 11E																		TGAAACTGTAGATAAAATTGT	0.363													36	142					0	0	1	0	0
UGT2A3	79799	broad.mit.edu	37	4	69817322	69817323	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:69817322_69817323CC>TT	uc003hef.2	-	1	187_188	c.156_157GG>AA	c.(154-159)GAGGTA>GAAATA	p.V53I	UGT2A3_uc010ihp.1_RNA	NM_024743	NP_079019	Q6UWM9	UD2A3_HUMAN	UDP glucuronosyltransferase 2 family,	53	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(1)|skin(1)	2						AATACTGTTACCTCATGGCCTC	0.465													29	46					0	0	1	0	0
UGT2B11	10720	broad.mit.edu	37	4	70070294	70070294	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:70070294G>A	uc003heh.2	-	5	1173	c.1164C>T	c.(1162-1164)ATC>ATT	p.I388I	uc003hei.1_Intron	NM_001073	NP_001064	O75310	UDB11_HUMAN	UDP glucuronosyltransferase 2 family,	388					estrogen metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			ovary(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	3						CCACCATAGGGATCCCATGGT	0.423													28	140					0	0	1	0	0
UGT2B28	54490	broad.mit.edu	37	4	70156447	70156447	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:70156447G>A	uc003hej.2	+	5	1230	c.1228G>A	c.(1228-1230)GGA>AGA	p.G410R	UGT2B28_uc010ihr.2_Intron	NM_053039	NP_444267	Q9BY64	UDB28_HUMAN	UDP glucuronosyltransferase 2 family,	410					xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(1)	1					Flunitrazepam(DB01544)	GAAGGCCAAGGGAGCAGCTGT	0.448													25	97					0	0	1	0	0
UGT2A1	10941	broad.mit.edu	37	4	70455304	70455304	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:70455304C>T	uc003hem.3	-	6	1433	c.1370G>A	c.(1369-1371)CGA>CAA	p.R457Q	UGT2A1_uc011caq.1_Missense_Mutation_p.R623Q|UGT2A1_uc010ihu.2_Missense_Mutation_p.R457Q|UGT2A1_uc010iht.2_Missense_Mutation_p.R413Q|UGT2A1_uc010ihs.2_Missense_Mutation_p.R458Q	NM_006798	NP_006789	Q9Y4X1	UD2A1_HUMAN	UDP glucuronosyltransferase 2 family,	457	Extracellular (Potential).				detection of chemical stimulus|sensory perception of smell	integral to membrane	glucuronosyltransferase activity|glucuronosyltransferase activity			ovary(1)	1						GAAGACTGCTCGATCCAGGGG	0.448													56	57					0	0	1	0	0
UGT2A1	10941	broad.mit.edu	37	4	70513132	70513132	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:70513132G>A	uc003hem.3	-	1	294	c.231C>T	c.(229-231)CCC>CCT	p.P77P	UGT2A1_uc011caq.1_Silent_p.P77P|UGT2A1_uc010ihu.2_Silent_p.P77P|UGT2A1_uc010iht.2_Silent_p.P77P	NM_006798	NP_006789	Q9Y4X1	UD2A1_HUMAN	UDP glucuronosyltransferase 2 family,	77	Extracellular (Potential).				detection of chemical stimulus|sensory perception of smell	integral to membrane	glucuronosyltransferase activity|glucuronosyltransferase activity			ovary(1)	1						CTTTGCCAAAGGGCACCCTAT	0.403													10	32					0	0	1	0	0
AMBN	258	broad.mit.edu	37	4	71472126	71472126	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:71472126C>T	uc003hfl.2	+	13	1098	c.1023C>T	c.(1021-1023)TTC>TTT	p.F341F		NM_016519	NP_057603	Q9NP70	AMBN_HUMAN	ameloblastin precursor	341					bone mineralization|cell adhesion|cell proliferation|odontogenesis of dentine-containing tooth	proteinaceous extracellular matrix	growth factor activity|structural constituent of tooth enamel			ovary(3)|skin(1)	4			Lung(101;0.235)			ACCCAGCTTTCCTTACAGAGC	0.587													10	21					0	0	1	0	0
ENAM	10117	broad.mit.edu	37	4	71508428	71508428	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:71508428C>T	uc011caw.1	+	9	1566	c.1285C>T	c.(1285-1287)CGC>TGC	p.R429C		NM_031889	NP_114095	Q9NRM1	ENAM_HUMAN	enamelin precursor	429					bone mineralization|odontogenesis	proteinaceous extracellular matrix	structural constituent of tooth enamel			ovary(3)	3			Lung(101;0.235)			CCCTGTTGTTCGCAATGAAAA	0.468													11	57					0	0	1	0	0
EREG	2069	broad.mit.edu	37	4	75250454	75250454	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:75250454C>T	uc003hie.1	+	5	605	c.439C>T	c.(439-441)CGA>TGA	p.R147*		NM_001432	NP_001423	O14944	EREG_HUMAN	epiregulin preproprotein	147	Arg/Lys-rich (basic).|Cytoplasmic (Potential).				angiogenesis|cell-cell signaling|cytokine-mediated signaling pathway|epidermal growth factor receptor signaling pathway|female meiosis|keratinocyte differentiation|keratinocyte proliferation|luteinizing hormone signaling pathway|mRNA transcription|negative regulation of epithelial cell proliferation|negative regulation of smooth muscle cell differentiation|negative regulation of transcription, DNA-dependent|oocyte maturation|organ morphogenesis|ovarian cumulus expansion|ovulation|positive regulation of cell division|positive regulation of cytokine production|positive regulation of DNA replication|positive regulation of epidermal growth factor receptor activity|positive regulation of fibroblast proliferation|positive regulation of innate immune response|positive regulation of interleukin-6 biosynthetic process|positive regulation of mitosis|positive regulation of phosphorylation|positive regulation of smooth muscle cell proliferation|primary follicle stage|wound healing	extracellular space|integral to plasma membrane	epidermal growth factor receptor binding|growth factor activity			breast(1)|skin(1)	2			Lung(101;0.196)			GTACAGAAATCGAAAAAGTAA	0.418													11	28					0	0	1	0	0
SHROOM3	57619	broad.mit.edu	37	4	77661319	77661319	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:77661319C>T	uc011cbx.1	+	5	2946	c.1993C>T	c.(1993-1995)CTC>TTC	p.L665F	SHROOM3_uc011cbz.1_Missense_Mutation_p.L489F|SHROOM3_uc003hkf.1_Missense_Mutation_p.L540F|SHROOM3_uc003hkg.2_Missense_Mutation_p.L443F	NM_020859	NP_065910	Q8TF72	SHRM3_HUMAN	shroom family member 3 protein	665					apical protein localization|cell morphogenesis|cellular pigment accumulation|pattern specification process|regulation of cell shape	adherens junction|apical junction complex|apical plasma membrane|cytoplasm|microtubule	actin binding			skin(2)|ovary(1)	3			Lung(101;0.0903)			CTTCTCATCTCTCCAGAACAT	0.592													31	77					0	0	1	0	0
SHROOM3	57619	broad.mit.edu	37	4	77661968	77661968	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:77661968C>T	uc011cbx.1	+	5	3595	c.2642C>T	c.(2641-2643)CCG>CTG	p.P881L	SHROOM3_uc011cbz.1_Missense_Mutation_p.P705L|SHROOM3_uc003hkf.1_Missense_Mutation_p.P756L|SHROOM3_uc003hkg.2_Missense_Mutation_p.P659L	NM_020859	NP_065910	Q8TF72	SHRM3_HUMAN	shroom family member 3 protein	881					apical protein localization|cell morphogenesis|cellular pigment accumulation|pattern specification process|regulation of cell shape	adherens junction|apical junction complex|apical plasma membrane|cytoplasm|microtubule	actin binding			skin(2)|ovary(1)	3			Lung(101;0.0903)			CCCCAGAGGCCGGACGCTCGG	0.697													6	21					0	0	1	0	0
GK2	2712	broad.mit.edu	37	4	80328892	80328892	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:80328892G>A	uc003hlu.2	-	1	481	c.463C>T	c.(463-465)CGT>TGT	p.R155C		NM_033214	NP_149991	Q14410	GLPK2_HUMAN	glycerol kinase 2	155					glycerol-3-phosphate metabolic process	mitochondrial outer membrane	ATP binding|glycerol kinase activity			ovary(2)|skin(2)	4						AGCATCCAACGAAGTTTTACT	0.408													48	60					0	0	1	0	0
HPSE	10855	broad.mit.edu	37	4	84231902	84231902	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:84231902C>T	uc003hoj.3	-	5	914	c.815G>A	c.(814-816)CGA>CAA	p.R272Q	HPSE_uc010ika.2_Missense_Mutation_p.R214Q|HPSE_uc011ccq.1_Intron|HPSE_uc011ccr.1_RNA|HPSE_uc011ccs.1_Intron|HPSE_uc011cct.1_Missense_Mutation_p.R272Q|HPSE_uc003hok.3_Missense_Mutation_p.R272Q	NM_001098540	NP_001092010	Q9Y251	HPSE_HUMAN	heparanase precursor	272	Heparin/HS-binding.				carbohydrate metabolic process|cell adhesion|proteoglycan metabolic process	extracellular region|lysosomal membrane|nucleus	beta-glucuronidase activity|cation binding			ovary(1)	1		Hepatocellular(203;0.114)		COAD - Colon adenocarcinoma(81;0.141)	Heparin(DB01109)	CGTCTTTCTTCGAGGCTGACC	0.328													37	124					0	0	1	0	0
AGPAT9	84803	broad.mit.edu	37	4	84518604	84518604	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:84518604C>T	uc003how.2	+	10	1150	c.932C>T	c.(931-933)TCA>TTA	p.S311L	AGPAT9_uc003hox.2_Missense_Mutation_p.S311L|AGPAT9_uc003hoy.2_Missense_Mutation_p.S311L	NM_032717	NP_116106	Q53EU6	GPAT3_HUMAN	1-acylglycerol-3-phosphate O-acyltransferase 9	311					phospholipid biosynthetic process|regulation of TOR signaling cascade|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane	glycerol-3-phosphate O-acyltransferase activity			skin(1)	1		Hepatocellular(203;0.114)				AACAATACTTCAGTCATGATG	0.303													7	33					0	0	1	0	0
WDFY3	23001	broad.mit.edu	37	4	85729554	85729554	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:85729554G>A	uc003hpd.2	-	15	2770	c.2362C>T	c.(2362-2364)CCT>TCT	p.P788S		NM_014991	NP_055806	Q8IZQ1	WDFY3_HUMAN	WD repeat and FYVE domain containing 3 isoform	788						cytoplasmic part|extrinsic to membrane|nuclear envelope	1-phosphatidylinositol binding|metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000808)		AGGCAAGGAGGGATCTGTTCT	0.458													45	128					0	0	1	0	0
MEPE	56955	broad.mit.edu	37	4	88766826	88766826	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:88766826G>A	uc003hqy.2	+	4	845	c.806G>A	c.(805-807)GGA>GAA	p.G269E	MEPE_uc010ikn.2_Missense_Mutation_p.G156E	NM_020203	NP_064588	Q9NQ76	MEPE_HUMAN	matrix, extracellular phosphoglycoprotein with	269					skeletal system development	proteinaceous extracellular matrix	extracellular matrix structural constituent|protein binding			ovary(1)|lung(1)|skin(1)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000432)		CCTGGTAAAGGAGAAGCTACT	0.458													16	29					0	0	1	0	0
Unknown	0	broad.mit.edu	37	4	88813514	88813514	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:88813514C>T	uc010iko.1	+	2	458	c.458C>T	c.(457-459)CCC>CTC	p.P153L						SubName: Full=Heat shock protein 90kDa alpha (Cytosolic), class B member 1, isoform CRA_a; SubName: Full=cDNA, FLJ92550, Homo sapiens heat shock 90kDa protein 1, beta (HSPCB), mRNA;																		CATGGTGAGCCCATTGGCAGG	0.468													37	52					0	0	1	0	0
TIGD2	166815	broad.mit.edu	37	4	90034415	90034415	+	Missense_Mutation	SNP	T	G	G			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:90034415T>G	uc003hsk.2	+	1	448	c.290T>G	c.(289-291)GTG>GGG	p.V97G	FAM13A_uc003hsh.1_5'Flank	NM_145715	NP_663761	Q4W5G0	TIGD2_HUMAN	tigger transposable element derived 2	97	HTH CENPB-type.				regulation of transcription, DNA-dependent	chromosome, centromeric region|nucleus	DNA binding				0		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;3.86e-05)		GGGATTCCAGTGTCCGGAACG	0.403													15	43					0	0	1	0	0
PDLIM5	10611	broad.mit.edu	37	4	95583617	95583617	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:95583617C>T	uc003hti.2	+	12	1781	c.1630C>T	c.(1630-1632)CCC>TCC	p.P544S	PDLIM5_uc011cdx.1_Missense_Mutation_p.P441S|PDLIM5_uc003hth.2_Missense_Mutation_p.P435S|PDLIM5_uc003htj.2_Missense_Mutation_p.P219S|PDLIM5_uc003htk.2_Missense_Mutation_p.P573S|PDLIM5_uc011cdy.1_Missense_Mutation_p.P422S|PDLIM5_uc003htl.2_Missense_Mutation_p.P219S	NM_006457	NP_006448	Q96HC4	PDLI5_HUMAN	PDZ and LIM domain 5 isoform a	544	LIM zinc-binding 3.				regulation of dendritic spine morphogenesis|regulation of synaptogenesis	actin cytoskeleton|cell junction|cytosol|postsynaptic density|postsynaptic membrane|synaptosome	actin binding|actinin binding|protein kinase C binding|zinc ion binding			ovary(1)|skin(1)	2		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;1.84e-09)		ATGTGAATTTCCCATAGAAGC	0.393													38	56					0	0	1	0	0
NHEDC1	150159	broad.mit.edu	37	4	103822477	103822477	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:103822477G>A	uc003hww.2	-	12	1467	c.1345C>T	c.(1345-1347)CCT>TCT	p.P449S	NHEDC1_uc003hwu.2_Intron|NHEDC1_uc010ilm.2_Intron|NHEDC1_uc003hwv.2_Intron|NHEDC1_uc011cev.1_Missense_Mutation_p.P222S	NM_139173	NP_631912	Q4ZJI4	NHDC1_HUMAN	Na+/H+ exchanger domain containing 1 isoform 1	449	Helical; (Potential).					integral to membrane	solute:hydrogen antiporter activity			ovary(1)|skin(1)	2		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;1.5e-08)		AGAGCCAGAGGACCTAACACA	0.398													6	131					0	0	1	0	0
EEF1A1P9	441032	broad.mit.edu	37	4	106406353	106406353	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:106406353G>A	uc003hxt.1	+	1	491	c.361G>A	c.(361-363)GAA>AAA	p.E121K		NR_003586				SubName: Full=Eukaryotic translation elongation factor 1 alpha; Flags: Fragment;												0						GAGATATGAGGAAATTGTTAA	0.443													22	25					0	0	1	0	0
GSTCD	79807	broad.mit.edu	37	4	106647957	106647957	+	Silent	SNP	A	G	G			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:106647957A>G	uc003hxz.3	+	4	1188	c.1116A>G	c.(1114-1116)GGA>GGG	p.G372G	GSTCD_uc003hxx.2_Silent_p.G372G|GSTCD_uc003hxy.3_Silent_p.G285G|GSTCD_uc011cfb.1_5'UTR|GSTCD_uc010ils.1_Silent_p.G372G	NM_001031720	NP_001026890	Q8NEC7	GSTCD_HUMAN	glutathione S-transferase, C-terminal domain	372						cytoplasm	rRNA methyltransferase activity			breast(1)|central_nervous_system(1)	2		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;3.15e-07)|READ - Rectum adenocarcinoma(30;0.139)		TATTTATAGGAGGACCAAGAC	0.363													13	50					0	0	1	0	0
DKK2	27123	broad.mit.edu	37	4	107845207	107845207	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:107845207G>A	uc003hyi.2	-	4	1389	c.684C>T	c.(682-684)TTC>TTT	p.F228F	DKK2_uc003hyj.1_3'UTR	NM_014421	NP_055236	Q9UBU2	DKK2_HUMAN	dickkopf homolog 2 precursor	228	DKK-type Cys-2.				multicellular organismal development|negative regulation of canonical Wnt receptor signaling pathway|positive regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	extracellular space				ovary(3)|lung(1)|skin(1)	5		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;6.34e-06)		CGCAACGCTGGAAAATTTCCA	0.493													21	87					0	0	1	0	0
DKK2	27123	broad.mit.edu	37	4	107845734	107845734	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:107845734C>T	uc003hyi.2	-	3	1202	c.497G>A	c.(496-498)GGA>GAA	p.G166E	DKK2_uc010ilw.1_RNA|DKK2_uc003hyj.1_Missense_Mutation_p.G166E	NM_014421	NP_055236	Q9UBU2	DKK2_HUMAN	dickkopf homolog 2 precursor	166					multicellular organismal development|negative regulation of canonical Wnt receptor signaling pathway|positive regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	extracellular space				ovary(3)|lung(1)|skin(1)	5		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;6.34e-06)		GTGTGGTCTTCCTAGATTCTG	0.393													13	63					0	0	1	0	0
AGXT2L1	64850	broad.mit.edu	37	4	109667988	109667988	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:109667988C>T	uc003hzc.2	-	10	1283	c.1102G>A	c.(1102-1104)GGA>AGA	p.G368R	AGXT2L1_uc010imc.2_Missense_Mutation_p.G362R|AGXT2L1_uc011cfm.1_Missense_Mutation_p.G328R|AGXT2L1_uc011cfn.1_Missense_Mutation_p.G295R|AGXT2L1_uc011cfo.1_Missense_Mutation_p.G310R	NM_031279	NP_112569	Q8TBG4	AT2L1_HUMAN	alanine-glyoxylate aminotransferase 2-like 1	368					cellular amino acid metabolic process	mitochondrion	alanine-glyoxylate transaminase activity|pyridoxal phosphate binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(123;0.000281)		AAATCAATTCCAATAAAAAGG	0.448													33	122					0	0	1	0	0
EGF	1950	broad.mit.edu	37	4	110862273	110862273	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:110862273G>A	uc003hzy.3	+	2	751	c.299G>A	c.(298-300)AGA>AAA	p.R100K	EGF_uc011cfu.1_Missense_Mutation_p.R100K|EGF_uc011cfv.1_Missense_Mutation_p.R100K	NM_001963	NP_001954	P01133	EGF_HUMAN	epidermal growth factor precursor	100	LDL-receptor class B 1.|Extracellular (Potential).				angiogenesis|DNA replication|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of secretion|platelet activation|platelet degranulation|positive regulation of catenin import into nucleus|positive regulation of epidermal growth factor receptor activity|positive regulation of MAP kinase activity|positive regulation of mitosis|regulation of calcium ion import|regulation of protein localization at cell surface	integral to membrane|plasma membrane|platelet alpha granule lumen	calcium ion binding|epidermal growth factor receptor binding|growth factor activity|transmembrane receptor protein tyrosine kinase activator activity			ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	4		Hepatocellular(203;0.0893)		OV - Ovarian serous cystadenocarcinoma(123;9.87e-06)	Sulindac(DB00605)	CTTTTGCAAAGAGTTTTTCTG	0.363													8	32					0	0	1	0	0
NDST4	64579	broad.mit.edu	37	4	115750982	115750982	+	Missense_Mutation	SNP	T	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:115750982T>A	uc003ibu.2	-	13	3142	c.2463A>T	c.(2461-2463)AAA>AAT	p.K821N	NDST4_uc010imw.2_RNA	NM_022569	NP_072091	Q9H3R1	NDST4_HUMAN	heparan sulfate N-deacetylase/N-sulfotransferase	821	Lumenal (Potential).|Heparan sulfate N-sulfotransferase 4.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			skin(3)|ovary(1)	4		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000562)		GGCCTTTGCTTTTTCCAAGGC	0.328													20	18					0	0	1	0	0
NDST4	64579	broad.mit.edu	37	4	115997547	115997547	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:115997547G>A	uc003ibu.2	-	2	1325	c.646C>T	c.(646-648)CCT>TCT	p.P216S	NDST4_uc010imw.2_Intron	NM_022569	NP_072091	Q9H3R1	NDST4_HUMAN	heparan sulfate N-deacetylase/N-sulfotransferase	216	Lumenal (Potential).|Heparan sulfate N-deacetylase 4.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			skin(3)|ovary(1)	4		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000562)		TCTTCCCCAGGAAGAGGGCCT	0.408													12	49					0	0	1	0	0
NDST3	9348	broad.mit.edu	37	4	118975246	118975246	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:118975246C>T	uc003ibx.2	+	2	584	c.181C>T	c.(181-183)CAA>TAA	p.Q61*	NDST3_uc011cgf.1_Nonsense_Mutation_p.Q61*|NDST3_uc003ibw.2_Nonsense_Mutation_p.Q61*	NM_004784	NP_004775	O95803	NDST3_HUMAN	N-deacetylase/N-sulfotransferase (heparan	61	Lumenal (Potential).|Heparan sulfate N-deacetylase 3.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			large_intestine(1)	1						CCTACCATATCAACTAATGGA	0.448													31	44					0	0	1	0	0
SYNPO2	171024	broad.mit.edu	37	4	119952507	119952507	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:119952507G>A	uc003icm.3	+	4	2773	c.2577G>A	c.(2575-2577)GTG>GTA	p.V859V	SYNPO2_uc010ina.2_Silent_p.V859V|SYNPO2_uc010inb.2_Silent_p.V859V|SYNPO2_uc011cgh.1_Intron|SYNPO2_uc010inc.2_Silent_p.V787V	NM_001128933	NP_001122405	Q9UMS6	SYNP2_HUMAN	synaptopodin 2 isoform b	859						nucleus|Z disc	14-3-3 protein binding|actin binding|muscle alpha-actinin binding			ovary(2)	2						CTGGTGCAGTGGGACCATCCA	0.507													18	73					0	0	1	0	0
PRDM5	11107	broad.mit.edu	37	4	121631533	121631533	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:121631533G>A	uc003idn.2	-	15	1909	c.1659C>T	c.(1657-1659)GCC>GCT	p.A553A	PRDM5_uc003ido.2_Silent_p.A522A|PRDM5_uc010ine.2_Missense_Mutation_p.L494F	NM_018699	NP_061169	Q9NQX1	PRDM5_HUMAN	PR domain containing 5	553	C2H2-type 14.				histone deacetylation|histone H3-K9 methylation|mitotic cell cycle|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	repressing transcription factor binding|sequence-specific DNA binding|transcription regulatory region DNA binding|zinc ion binding			central_nervous_system(1)|pancreas(1)	2						TCTGGCTGAAGGCCTTGCTGC	0.483													15	36					0	0	1	0	0
C4orf31	79625	broad.mit.edu	37	4	121958698	121958698	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:121958698G>A	uc003idq.1	-	4	955	c.428C>T	c.(427-429)TCC>TTC	p.S143F		NM_024574	NP_078850	Q8TB73	CD031_HUMAN	hypothetical protein LOC79625 precursor	143	Poly-Ser.										0						ATATAAACCGGATGGGGAACT	0.408													31	45					0	0	1	0	0
KIAA1109	84162	broad.mit.edu	37	4	123226035	123226035	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:123226035G>A	uc003ieh.2	+	54	9614	c.9569G>A	c.(9568-9570)CGA>CAA	p.R3190Q	KIAA1109_uc003iel.1_Missense_Mutation_p.R1125Q	NM_015312	NP_056127	Q2LD37	K1109_HUMAN	fragile site-associated protein	3190					regulation of cell growth|regulation of epithelial cell differentiation	integral to membrane|nucleus				ovary(8)|skin(2)|pancreas(1)|central_nervous_system(1)	12						CTTTCTAACCGACTTCAAACC	0.393													21	20					0	0	1	0	0
FAT4	79633	broad.mit.edu	37	4	126328292	126328292	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:126328292C>T	uc003ifj.3	+	3	5565	c.5565C>T	c.(5563-5565)ATC>ATT	p.I1855I	FAT4_uc011cgp.1_Silent_p.I153I	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	1855	Cadherin 18.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						AGGACACAATCCCTGGTAGGT	0.388													16	82					0	0	1	0	0
PCDH18	54510	broad.mit.edu	37	4	138451538	138451538	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:138451538C>T	uc003ihe.3	-	1	2092	c.1705G>A	c.(1705-1707)GAA>AAA	p.E569K	PCDH18_uc003ihf.3_Missense_Mutation_p.E562K|PCDH18_uc011cgz.1_Intron|PCDH18_uc003ihg.3_Missense_Mutation_p.E349K|PCDH18_uc011cha.1_Intron	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	569	Extracellular (Potential).|Cadherin 5.				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					TTGTCATTTTCGTCAATGATG	0.458													54	93					0	0	1	0	0
IL15	3600	broad.mit.edu	37	4	142649122	142649122	+	Silent	SNP	G	A	A	rs143236056	by1000genomes	TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:142649122G>A	uc003iis.2	+	6	594	c.225G>A	c.(223-225)ACG>ACA	p.T75T	IL15_uc003iit.2_Silent_p.T75T|IL15_uc010iol.2_RNA|IL15_uc003iiu.2_RNA	NM_000585	NP_000576	P40933	IL15_HUMAN	interleukin 15 preproprotein	75					cell-cell signaling|immune response|positive regulation of interleukin-17 production	endosome|extracellular space|Golgi apparatus|integral to plasma membrane|membrane fraction|nucleus	cytokine activity|cytokine receptor binding|signal transducer activity				0	all_hematologic(180;0.158)					CTTTATATACGGAAAGTGATG	0.264													6	29					0	0	1	0	0
IL15	3600	broad.mit.edu	37	4	142649124	142649124	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:142649124A>T	uc003iis.2	+	6	596	c.227A>T	c.(226-228)GAA>GTA	p.E76V	IL15_uc003iit.2_Missense_Mutation_p.E76V|IL15_uc010iol.2_RNA|IL15_uc003iiu.2_RNA	NM_000585	NP_000576	P40933	IL15_HUMAN	interleukin 15 preproprotein	76					cell-cell signaling|immune response|positive regulation of interleukin-17 production	endosome|extracellular space|Golgi apparatus|integral to plasma membrane|membrane fraction|nucleus	cytokine activity|cytokine receptor binding|signal transducer activity				0	all_hematologic(180;0.158)					TTATATACGGAAAGTGATGTT	0.264													7	29					0	0	1	0	0
ARHGAP10	79658	broad.mit.edu	37	4	148985583	148985583	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:148985583G>C	uc003ilf.2	+	22	2197	c.2197G>C	c.(2197-2199)GCT>CCT	p.A733P	ARHGAP10_uc003ilg.2_Missense_Mutation_p.A331P|ARHGAP10_uc003ilh.2_Missense_Mutation_p.A314P|ARHGAP10_uc003ili.2_Missense_Mutation_p.A166P	NM_024605	NP_078881	A1A4S6	RHG10_HUMAN	Rho GTPase activating protein 10	733	SH3.				apoptosis|filopodium assembly|regulation of apoptosis|small GTPase mediated signal transduction	cytosol|perinuclear region of cytoplasm|plasma membrane	cytoskeletal adaptor activity|SH3 domain binding			skin(2)|pancreas(1)|lung(1)	4	all_hematologic(180;0.151)	Renal(17;0.0166)		GBM - Glioblastoma multiforme(119;0.0423)		CAGTCGGAAGGCTCGAGCCGT	0.458													27	25					0	0	1	0	0
PET112L	5188	broad.mit.edu	37	4	152638129	152638129	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:152638129G>A	uc003iml.2	-	4	551	c.539C>T	c.(538-540)CCC>CTC	p.P180L	PET112L_uc003imm.3_Missense_Mutation_p.P180L	NM_004564	NP_004555	O75879	GATB_HUMAN	PET112-like precursor	180						mitochondrion	ATP binding|carbon-nitrogen ligase activity, with glutamine as amido-N-donor|translation factor activity, nucleic acid binding				0	all_hematologic(180;0.093)	Acute lymphoblastic leukemia(8;0.138)			L-Glutamic Acid(DB00142)|L-Glutamine(DB00130)	CACCGTCTTGGGGATCACCTG	0.527													35	115					0	0	1	0	0
PET112L	5188	broad.mit.edu	37	4	152640637	152640637	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:152640637G>A	uc003iml.2	-	3	393	c.381C>T	c.(379-381)AAC>AAT	p.N127N	PET112L_uc003imm.3_Silent_p.N127N	NM_004564	NP_004555	O75879	GATB_HUMAN	PET112-like precursor	127						mitochondrion	ATP binding|carbon-nitrogen ligase activity, with glutamine as amido-N-donor|translation factor activity, nucleic acid binding				0	all_hematologic(180;0.093)	Acute lymphoblastic leukemia(8;0.138)			L-Glutamic Acid(DB00142)|L-Glutamine(DB00130)	TTATGTGGCAGTTCAGAGCCA	0.502													26	67					0	0	1	0	0
TLR2	7097	broad.mit.edu	37	4	154624139	154624139	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:154624139C>T	uc003inq.2	+	3	299	c.80C>T	c.(79-81)TCT>TTT	p.S27F	TLR2_uc003inr.2_Missense_Mutation_p.S27F|TLR2_uc003ins.2_Missense_Mutation_p.S27F	NM_003264	NP_003255	O60603	TLR2_HUMAN	toll-like receptor 2 precursor	27	Extracellular (Potential).				cellular response to diacyl bacterial lipopeptide|cellular response to lipoteichoic acid|cellular response to triacyl bacterial lipopeptide|detection of diacyl bacterial lipopeptide|detection of triacyl bacterial lipopeptide|I-kappaB phosphorylation|induction of apoptosis|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of chemokine production|positive regulation of interferon-beta production|positive regulation of interleukin-12 production|positive regulation of interleukin-18 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of toll-like receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor production|positive regulation of Wnt receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	cytoplasm|integral to plasma membrane|Toll-like receptor 1-Toll-like receptor 2 protein complex	Gram-positive bacterial cell surface binding|lipopolysaccharide receptor activity|peptidoglycan binding|protein heterodimerization activity|transmembrane receptor activity|triacyl lipopeptide binding			ovary(1)|lung(1)|breast(1)	3	all_hematologic(180;0.093)	Renal(120;0.117)				AATCAGGCTTCTCTGTCTTGT	0.502													32	42					0	0	1	0	0
SFRP2	6423	broad.mit.edu	37	4	154702801	154702801	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:154702801C>T	uc003inv.1	-	3	931	c.690G>A	c.(688-690)AGG>AGA	p.R230R		NM_003013	NP_003004	Q96HF1	SFRP2_HUMAN	secreted frizzled-related protein 2 precursor	230	NTR.				brain development|cardiac left ventricle morphogenesis|cell-cell signaling|dermatome development|hemopoietic stem cell proliferation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cell growth|negative regulation of cell migration|negative regulation of epithelial cell proliferation|negative regulation of epithelial to mesenchymal transition|negative regulation of peptidyl-tyrosine phosphorylation|negative regulation of transcription, DNA-dependent|outflow tract morphogenesis|patterning of blood vessels|positive regulation of angiogenesis|positive regulation of anti-apoptosis|positive regulation of apoptosis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell adhesion mediated by integrin|positive regulation of cell growth|positive regulation of cell proliferation|positive regulation of fat cell differentiation|positive regulation of peptidyl-serine phosphorylation|positive regulation of transcription from RNA polymerase II promoter|regulation of stem cell division|sclerotome development	cytoplasm|extracellular matrix|extracellular space|plasma membrane	fibronectin binding|integrin binding|PDZ domain binding|receptor agonist activity|Wnt receptor activity|Wnt-protein binding			ovary(1)|central_nervous_system(1)	2	all_hematologic(180;0.093)	Renal(120;0.117)				TCTTCAGGTCCCTTTCGGACA	0.478													16	76					0	0	1	0	0
DCHS2	54798	broad.mit.edu	37	4	155219180	155219180	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:155219180G>A	uc003inw.2	-	18	4921	c.4921C>T	c.(4921-4923)CAG>TAG	p.Q1641*		NM_017639	NP_060109	Q6V1P9	PCD23_HUMAN	dachsous 2 isoform 1	1641	Cadherin 14.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|pancreas(1)	4	all_hematologic(180;0.208)	Renal(120;0.0854)		LUSC - Lung squamous cell carcinoma(193;0.107)		GGATTTTGCTGAAATTGAATT	0.433													19	34					0	0	1	0	0
FGA	2243	broad.mit.edu	37	4	155510618	155510618	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:155510618C>A	uc003iod.1	-	2	209	c.151G>T	c.(151-153)GAC>TAC	p.D51Y	FGA_uc003ioe.1_Missense_Mutation_p.D51Y|FGA_uc003iof.1_Missense_Mutation_p.D51Y	NM_000508	NP_000499	P02671	FIBA_HUMAN	fibrinogen, alpha polypeptide isoform alpha-E	51					platelet activation|platelet degranulation|protein polymerization|response to calcium ion|signal transduction	external side of plasma membrane|fibrinogen complex|platelet alpha granule lumen	eukaryotic cell surface binding|protein binding, bridging|receptor binding			ovary(2)|breast(1)	3	all_hematologic(180;0.215)	Renal(120;0.0458)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Sucralfate(DB00364)|Tenecteplase(DB00031)	AAGGGCCAGTCTGAATCTTTG	0.537													49	55					4.01344e-20	4.07659e-20	1	1	0
RBM46	166863	broad.mit.edu	37	4	155719191	155719191	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:155719191G>A	uc003ioo.2	+	3	553	c.380G>A	c.(379-381)CGA>CAA	p.R127Q	RBM46_uc011cim.1_Missense_Mutation_p.R127Q|RBM46_uc003iop.1_Missense_Mutation_p.R127Q	NM_144979	NP_659416	Q8TBY0	RBM46_HUMAN	RNA binding motif protein 46	127	RRM 1.						nucleotide binding|RNA binding			central_nervous_system(1)|skin(1)	2	all_hematologic(180;0.24)	Renal(120;0.0854)				TATGAAATTCGACCAGGGAAG	0.333													19	27					0	0	1	0	0
GUCY1A3	2982	broad.mit.edu	37	4	156634361	156634361	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:156634361C>T	uc003iov.2	+	8	1734	c.1198C>T	c.(1198-1200)CTC>TTC	p.L400F	GUCY1A3_uc010iqc.2_Missense_Mutation_p.L400F|GUCY1A3_uc003iow.2_Missense_Mutation_p.L400F|GUCY1A3_uc010iqd.2_Missense_Mutation_p.L399F|GUCY1A3_uc003iox.2_Missense_Mutation_p.L400F|GUCY1A3_uc003ioz.2_Missense_Mutation_p.L165F|GUCY1A3_uc003ioy.2_Missense_Mutation_p.L400F|GUCY1A3_uc010iqe.2_Missense_Mutation_p.L165F|GUCY1A3_uc003ipa.2_Intron|GUCY1A3_uc003ipb.2_Missense_Mutation_p.L400F	NM_000856	NP_000847	Q02108	GCYA3_HUMAN	guanylate cyclase 1, soluble, alpha 3 isoform A	400					blood circulation|intracellular signal transduction|nitric oxide mediated signal transduction|platelet activation	guanylate cyclase complex, soluble	GTP binding|guanylate cyclase activity|heme binding|receptor activity			central_nervous_system(2)|ovary(1)|skin(1)	4	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.17)		AGGGCTCTACCTCTCAGACAT	0.478													30	22					0	0	1	0	0
GLRB	2743	broad.mit.edu	37	4	158057765	158057765	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:158057765G>A	uc003ipj.2	+	5	644	c.442G>A	c.(442-444)GAA>AAA	p.E148K		NM_000824	NP_000815	P48167	GLRB_HUMAN	glycine receptor, beta isoform A precursor	148	Extracellular (Probable).				nervous system development|neuropeptide signaling pathway|startle response	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|protein binding|receptor activity			skin(2)	2	all_hematologic(180;0.24)	Renal(120;0.0458)		KIRC - Kidney renal clear cell carcinoma(143;0.0564)|COAD - Colon adenocarcinoma(41;0.0642)|Kidney(143;0.0707)	Glycine(DB00145)	TTTTGCAAATGAAAAAAGTGC	0.393													18	96					0	0	1	0	0
GLRB	2743	broad.mit.edu	37	4	158057798	158057798	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:158057798G>A	uc003ipj.2	+	5	677	c.475G>A	c.(475-477)GAA>AAA	p.E159K		NM_000824	NP_000815	P48167	GLRB_HUMAN	glycine receptor, beta isoform A precursor	159	Extracellular (Probable).				nervous system development|neuropeptide signaling pathway|startle response	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|protein binding|receptor activity			skin(2)	2	all_hematologic(180;0.24)	Renal(120;0.0458)		KIRC - Kidney renal clear cell carcinoma(143;0.0564)|COAD - Colon adenocarcinoma(41;0.0642)|Kidney(143;0.0707)	Glycine(DB00145)	TGTGACCCAGGAAAACATCCT	0.338													54	62					0	0	1	0	0
MORF4	10934	broad.mit.edu	37	4	174537329	174537329	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:174537329C>T	uc011cke.1	-	1	466	c.466G>A	c.(466-468)GAA>AAA	p.E156K		NM_006792	NP_006783			mortality factor 4												0		Prostate(90;0.00201)|Renal(120;0.0183)|Melanoma(52;0.0749)|all_neural(102;0.0765)|all_hematologic(60;0.107)		all cancers(43;1.88e-18)|Epithelial(43;1.19e-16)|OV - Ovarian serous cystadenocarcinoma(60;1.38e-09)|STAD - Stomach adenocarcinoma(60;0.00273)|GBM - Glioblastoma multiforme(59;0.0064)|LUSC - Lung squamous cell carcinoma(193;0.0903)|Kidney(143;0.249)		GCAAGAATTTCGGCATACTGT	0.448													65	92					0	0	1	0	0
ADAM29	11086	broad.mit.edu	37	4	175898020	175898020	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:175898020C>T	uc003iuc.2	+	5	2014	c.1344C>T	c.(1342-1344)TTC>TTT	p.F448F	ADAM29_uc003iud.2_Silent_p.F448F|ADAM29_uc010irr.2_Silent_p.F448F|ADAM29_uc011cki.1_Silent_p.F448F	NM_014269	NP_055084	Q9UKF5	ADA29_HUMAN	ADAM metallopeptidase domain 29 preproprotein	448	Disintegrin.|Extracellular (Potential).				proteolysis|spermatogenesis	integral to plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(5)|central_nervous_system(3)|ovary(3)|large_intestine(2)|lung(2)|pancreas(1)	16		Breast(14;0.00908)|Melanoma(52;0.00951)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;3.08e-19)|Epithelial(43;6.24e-18)|OV - Ovarian serous cystadenocarcinoma(60;1.78e-09)|STAD - Stomach adenocarcinoma(60;0.00303)|GBM - Glioblastoma multiforme(59;0.0106)|LUSC - Lung squamous cell carcinoma(193;0.0286)		ACTGCAAGTTCCTACCATCAG	0.438													32	40					0	0	1	0	0
LOC285501	285501	broad.mit.edu	37	4	178882054	178882054	+	RNA	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:178882054G>A	uc010iru.2	+	3		c.517G>A				NR_028342				Homo sapiens cDNA clone IMAGE:4828874.												0		all_lung(41;6.03e-08)|Lung NSC(41;4.26e-07)|Breast(14;0.00066)|Melanoma(52;0.00168)|Prostate(90;0.0129)|all_hematologic(60;0.0202)|Renal(120;0.0246)|Colorectal(36;0.0508)|Hepatocellular(41;0.236)		all cancers(43;9.24e-25)|Epithelial(43;6.28e-22)|OV - Ovarian serous cystadenocarcinoma(60;5.29e-10)|LUSC - Lung squamous cell carcinoma(1;2.61e-05)|Lung(1;3.22e-05)|GBM - Glioblastoma multiforme(59;0.000185)|Colorectal(24;0.000244)|STAD - Stomach adenocarcinoma(60;0.000777)|COAD - Colon adenocarcinoma(29;0.000884)		ATGCAATCTGGAAAAAGTACG	0.318													47	45					0	0	1	0	0
HELT	391723	broad.mit.edu	37	4	185940190	185940190	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:185940190G>A	uc011ckq.1	+	1	108	c.108G>A	c.(106-108)CCG>CCA	p.P36P	HELT_uc011cko.1_Intron|HELT_uc003ixa.3_Intron|HELT_uc011ckp.1_Intron	NM_001029887	NP_001025058	A6NFD8	HELT_HUMAN	HES/HEY-like transcription factor	36							DNA binding				0		all_lung(41;9.65e-12)|Lung NSC(41;1.64e-11)|Colorectal(36;0.0215)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_hematologic(60;0.0749)		all cancers(43;8.92e-26)|Epithelial(43;3.02e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.59e-11)|Colorectal(24;4.79e-05)|BRCA - Breast invasive adenocarcinoma(30;7.72e-05)|GBM - Glioblastoma multiforme(59;0.000274)|COAD - Colon adenocarcinoma(29;0.000362)|STAD - Stomach adenocarcinoma(60;0.000756)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.155)		TGGGTGGACCGATGGCAGGGA	0.602													23	22					0	0	1	0	0
TLR3	7098	broad.mit.edu	37	4	186997827	186997827	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:186997827G>A	uc003iyq.2	+	2	155	c.54G>A	c.(52-54)GGG>GGA	p.G18G		NM_003265	NP_003256	O15455	TLR3_HUMAN	toll-like receptor 3 precursor	18					activation of NF-kappaB-inducing kinase activity|cellular response to mechanical stimulus|defense response to bacterium|defense response to virus|detection of virus|hyperosmotic response|I-kappaB phosphorylation|inflammatory response|innate immune response|MyD88-independent toll-like receptor signaling pathway|negative regulation of osteoclast differentiation|positive regulation of chemokine production|positive regulation of interferon-alpha biosynthetic process|positive regulation of interferon-beta biosynthetic process|positive regulation of interferon-beta production|positive regulation of interferon-gamma biosynthetic process|positive regulation of interleukin-12 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of toll-like receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor production|toll-like receptor 3 signaling pathway	endoplasmic reticulum membrane|endosome membrane|integral to plasma membrane	double-stranded RNA binding|transmembrane receptor activity			ovary(2)|prostate(1)|lung(1)|breast(1)	5		all_cancers(14;4.27e-52)|all_epithelial(14;7.69e-39)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.0066)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|all_neural(102;0.243)		OV - Ovarian serous cystadenocarcinoma(60;1.47e-11)|BRCA - Breast invasive adenocarcinoma(30;1.14e-05)|GBM - Glioblastoma multiforme(59;0.000107)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.16)		TGCCCTTTGGGATGCTGTGTG	0.458													19	65					0	0	1	0	0
TLR3	7098	broad.mit.edu	37	4	187003926	187003926	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:187003926G>A	uc003iyq.2	+	4	1187	c.1086G>A	c.(1084-1086)ATG>ATA	p.M362I	TLR3_uc011ckz.1_Missense_Mutation_p.M85I|TLR3_uc003iyr.2_Missense_Mutation_p.M85I	NM_003265	NP_003256	O15455	TLR3_HUMAN	toll-like receptor 3 precursor	362	LRR 13.|Lumenal (Potential).				activation of NF-kappaB-inducing kinase activity|cellular response to mechanical stimulus|defense response to bacterium|defense response to virus|detection of virus|hyperosmotic response|I-kappaB phosphorylation|inflammatory response|innate immune response|MyD88-independent toll-like receptor signaling pathway|negative regulation of osteoclast differentiation|positive regulation of chemokine production|positive regulation of interferon-alpha biosynthetic process|positive regulation of interferon-beta biosynthetic process|positive regulation of interferon-beta production|positive regulation of interferon-gamma biosynthetic process|positive regulation of interleukin-12 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of toll-like receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor production|toll-like receptor 3 signaling pathway	endoplasmic reticulum membrane|endosome membrane|integral to plasma membrane	double-stranded RNA binding|transmembrane receptor activity			ovary(2)|prostate(1)|lung(1)|breast(1)	5		all_cancers(14;4.27e-52)|all_epithelial(14;7.69e-39)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.0066)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|all_neural(102;0.243)		OV - Ovarian serous cystadenocarcinoma(60;1.47e-11)|BRCA - Breast invasive adenocarcinoma(30;1.14e-05)|GBM - Glioblastoma multiforme(59;0.000107)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.16)		ACCTTAACATGGAAGATAATG	0.353													13	29					0	0	1	0	0
TLR3	7098	broad.mit.edu	37	4	187005027	187005027	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:187005027G>A	uc003iyq.2	+	4	2288	c.2187G>A	c.(2185-2187)AGG>AGA	p.R729R	TLR3_uc011ckz.1_Silent_p.R452R|TLR3_uc003iyr.2_Silent_p.R452R	NM_003265	NP_003256	O15455	TLR3_HUMAN	toll-like receptor 3 precursor	729	Cytoplasmic (Potential).				activation of NF-kappaB-inducing kinase activity|cellular response to mechanical stimulus|defense response to bacterium|defense response to virus|detection of virus|hyperosmotic response|I-kappaB phosphorylation|inflammatory response|innate immune response|MyD88-independent toll-like receptor signaling pathway|negative regulation of osteoclast differentiation|positive regulation of chemokine production|positive regulation of interferon-alpha biosynthetic process|positive regulation of interferon-beta biosynthetic process|positive regulation of interferon-beta production|positive regulation of interferon-gamma biosynthetic process|positive regulation of interleukin-12 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of toll-like receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor production|toll-like receptor 3 signaling pathway	endoplasmic reticulum membrane|endosome membrane|integral to plasma membrane	double-stranded RNA binding|transmembrane receptor activity			ovary(2)|prostate(1)|lung(1)|breast(1)	5		all_cancers(14;4.27e-52)|all_epithelial(14;7.69e-39)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.0066)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|all_neural(102;0.243)		OV - Ovarian serous cystadenocarcinoma(60;1.47e-11)|BRCA - Breast invasive adenocarcinoma(30;1.14e-05)|GBM - Glioblastoma multiforme(59;0.000107)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.16)		AGGGCTGGAGGATATCTTTTT	0.358													28	114					0	0	1	0	0
CYP4V2	285440	broad.mit.edu	37	4	187130106	187130106	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:187130106C>T	uc003iyw.3	+	9	1482	c.1178C>T	c.(1177-1179)CCT>CTT	p.P393L	CYP4V2_uc010ism.2_RNA	NM_207352	NP_997235	Q6ZWL3	CP4V2_HUMAN	cytochrome P450, family 4, subfamily v,	393					response to stimulus|visual perception	endoplasmic reticulum membrane|integral to membrane	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen				0		all_cancers(14;4.27e-52)|all_epithelial(14;7.69e-39)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.0066)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|all_neural(102;0.243)		OV - Ovarian serous cystadenocarcinoma(60;1.33e-10)|BRCA - Breast invasive adenocarcinoma(30;3.84e-05)|GBM - Glioblastoma multiforme(59;0.000132)|STAD - Stomach adenocarcinoma(60;0.000293)|LUSC - Lung squamous cell carcinoma(40;0.00242)|READ - Rectum adenocarcinoma(43;0.17)		CGCCTTTTTCCTTCTGTTCCT	0.428													25	68					0	0	1	0	0
KLKB1	3818	broad.mit.edu	37	4	187171545	187171545	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:187171545C>T	uc003iyy.2	+	7	818	c.747C>T	c.(745-747)ATC>ATT	p.I249I	KLKB1_uc011clc.1_Missense_Mutation_p.S37L|KLKB1_uc011cld.1_Silent_p.I211I	NM_000892	NP_000883	P03952	KLKB1_HUMAN	plasma kallikrein B1 precursor	249	Apple 3.				blood coagulation, intrinsic pathway|Factor XII activation|fibrinolysis|plasminogen activation|positive regulation of fibrinolysis	cytoplasm|extracellular space|plasma membrane	serine-type endopeptidase activity			ovary(1)	1		all_cancers(14;1.55e-52)|all_epithelial(14;7.69e-39)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.00664)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|all_neural(102;0.243)		OV - Ovarian serous cystadenocarcinoma(60;1.29e-10)|BRCA - Breast invasive adenocarcinoma(30;3.8e-05)|GBM - Glioblastoma multiforme(59;0.000131)|STAD - Stomach adenocarcinoma(60;0.000292)|LUSC - Lung squamous cell carcinoma(40;0.00241)|READ - Rectum adenocarcinoma(43;0.168)		TATGGAAAATCGAGTCACAAA	0.448													16	62					0	0	1	0	0
FAT1	2195	broad.mit.edu	37	4	187540264	187540264	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:187540264G>A	uc003izf.2	-	10	7664	c.7476C>T	c.(7474-7476)TTC>TTT	p.F2492F		NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	2492	Extracellular (Potential).|Cadherin 22.				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						CGTTCTGAAGGAAAGCAGGAC	0.438										HNSCC(5;0.00058)			107	126					0	0	1	0	0
TRIML1	339976	broad.mit.edu	37	4	189068457	189068457	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr4:189068457C>T	uc003izm.1	+	6	1453	c.1338C>T	c.(1336-1338)TCC>TCT	p.S446S	TRIML1_uc003izn.1_Silent_p.S170S	NM_178556	NP_848651	Q8N9V2	TRIML_HUMAN	tripartite motif family-like 1	446	B30.2/SPRY.				multicellular organismal development		ligase activity|zinc ion binding			ovary(1)|pancreas(1)|breast(1)|skin(1)	4		all_cancers(14;1.33e-43)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)|all_hematologic(60;0.062)		OV - Ovarian serous cystadenocarcinoma(60;1.52e-11)|BRCA - Breast invasive adenocarcinoma(30;4.19e-06)|GBM - Glioblastoma multiforme(59;0.000232)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.156)		CTATCTTTTCCCCCTGCCTCC	0.562													24	74					0	0	1	0	0
KIAA0947	23379	broad.mit.edu	37	5	5489324	5489325	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:5489324_5489325CC>TT	uc003jdm.3	+	19	6904_6905	c.6682_6683CC>TT	c.(6682-6684)CCA>TTA	p.P2228L		NM_015325	NP_056140	Q9Y2F5	K0947_HUMAN	hypothetical protein LOC23379	2228										ovary(1)|central_nervous_system(1)	2						TCCCAGCAATCCAGCAGAAATT	0.47													12	25					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13751296	13751296	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:13751296G>A	uc003jfd.2	-	65	11144	c.11102C>T	c.(11101-11103)CCA>CTA	p.P3701L	DNAH5_uc003jfc.2_5'UTR	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3701	AAA 5 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GGTGTAGGCTGGGTTAGGCAA	0.408									Kartagener_syndrome				25	62					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13770869	13770869	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:13770869G>A	uc003jfd.2	-	56	9636	c.9594C>T	c.(9592-9594)ACC>ACT	p.T3198T	DNAH5_uc003jfc.2_5'Flank	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3198	Stalk (By similarity).|Potential.				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TGTTGGCCAGGGTCCGCACCT	0.333									Kartagener_syndrome				20	38					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13792274	13792274	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:13792274C>T	uc003jfd.2	-	50	8319	c.8277G>A	c.(8275-8277)GTG>GTA	p.V2759V		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	2759	AAA 3 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CAGAATCTCTCACTTCTTCTG	0.423									Kartagener_syndrome				20	39					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13862820	13862820	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:13862820C>T	uc003jfd.2	-	29	4675	c.4633G>A	c.(4633-4635)GAG>AAG	p.E1545K		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1545	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					AGCTTTTGCTCAATGTCTCTC	0.428									Kartagener_syndrome				38	81					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13876802	13876802	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:13876802G>A	uc003jfd.2	-	22	3429	c.3387C>T	c.(3385-3387)TCC>TCT	p.S1129S		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1129	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CCTTTTTGGTGGAGTTGATAA	0.388									Kartagener_syndrome				23	38					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13900349	13900349	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:13900349C>T	uc003jfd.2	-	15	2267	c.2225G>A	c.(2224-2226)CGA>CAA	p.R742Q		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	742	Potential.|Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GTATCTATCTCGTTTCTGGAA	0.388									Kartagener_syndrome				15	47					0	0	1	0	0
MYO10	4651	broad.mit.edu	37	5	16670951	16670951	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:16670951G>A	uc003jft.3	-	39	6035	c.5567C>T	c.(5566-5568)TCC>TTC	p.S1856F	MYO10_uc011cnb.1_Missense_Mutation_p.S485F|MYO10_uc011cnc.1_Missense_Mutation_p.S735F|MYO10_uc011cnd.1_Missense_Mutation_p.S1213F|MYO10_uc011cne.1_Missense_Mutation_p.S1213F|MYO10_uc010itx.2_Missense_Mutation_p.S1478F	NM_012334	NP_036466	Q9HD67	MYO10_HUMAN	myosin X	1856	FERM.				axon guidance|signal transduction	myosin complex	actin binding|ATP binding|motor activity			ovary(2)|pancreas(1)	3						TCTCTGCAGGGAATAAACCTC	0.572													27	35					0	0	1	0	0
CDH12	1010	broad.mit.edu	37	5	21783575	21783575	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:21783575C>T	uc010iuc.2	-	8	1743	c.1285G>A	c.(1285-1287)GAC>AAC	p.D429N	CDH12_uc011cno.1_Missense_Mutation_p.D389N|CDH12_uc003jgk.2_Missense_Mutation_p.D429N	NM_004061	NP_004052	P55289	CAD12_HUMAN	cadherin 12, type 2 preproprotein	429	Extracellular (Potential).|Cadherin 4.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2						AAGTAGCTGTCCCCATCACTC	0.378										HNSCC(59;0.17)			58	114					0	0	1	0	0
CDH6	1004	broad.mit.edu	37	5	31267739	31267739	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:31267739G>A	uc003jhe.1	+	2	485	c.159G>A	c.(157-159)AGG>AGA	p.R53R	CDH6_uc003jhd.1_Silent_p.R53R	NM_004932	NP_004923	P55285	CADH6_HUMAN	cadherin 6, type 2 preproprotein	53					adherens junction organization|cell junction assembly|homophilic cell adhesion	cytoplasm|integral to membrane|nucleus|plasma membrane	calcium ion binding			ovary(4)|skin(2)|large_intestine(1)	7						GTTCAAAAAGGAGCTGGATGT	0.458													40	73					0	0	1	0	0
ZFR	51663	broad.mit.edu	37	5	32415193	32415193	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:32415193G>A	uc003jhr.1	-	5	745	c.665C>T	c.(664-666)ACC>ATC	p.T222I	ZFR_uc010iun.1_Missense_Mutation_p.T222I	NM_016107	NP_057191	Q96KR1	ZFR_HUMAN	zinc finger RNA binding protein	222	Ala-rich.				multicellular organismal development	chromosome|cytoplasm|nucleus	DNA binding|RNA binding|zinc ion binding				0				STAD - Stomach adenocarcinoma(35;0.19)		GAAAGTAGTGGTAGCTGGACT	0.517													57	110					0	0	1	0	0
ADAMTS12	81792	broad.mit.edu	37	5	33576994	33576994	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:33576994G>A	uc003jia.1	-	19	3300	c.3137C>T	c.(3136-3138)CCA>CTA	p.P1046L	ADAMTS12_uc010iuq.1_Missense_Mutation_p.P961L	NM_030955	NP_112217	P58397	ATS12_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1046	Spacer 2.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)	9						GCTGATTGCTGGAGTGCTTGT	0.562										HNSCC(64;0.19)			37	61					0	0	1	0	0
AMACR	23600	broad.mit.edu	37	5	34005933	34005933	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:34005933G>A	uc003jig.2	-	2	401	c.319C>T	c.(319-321)CTG>TTG	p.L107L	AMACR_uc003jih.2_Silent_p.L107L|AMACR_uc003jii.2_Silent_p.L107L|AMACR_uc003jij.2_Silent_p.L107L|AMACR_uc003jil.1_Silent_p.L107L|AMACR_uc003jik.1_Silent_p.L107L	NM_014324	NP_055139	Q9UHK6	AMACR_HUMAN	alpha-methylacyl-CoA racemase isoform 1	107			L -> P (in CBAS4; inactive enzyme).		bile acid biosynthetic process|fatty acid beta-oxidation using acyl-CoA oxidase	mitochondrion|peroxisomal matrix	alpha-methylacyl-CoA racemase activity				0						AATCCACTCAGCCTGGCATAA	0.448													29	62					0	0	1	0	0
PRLR	5618	broad.mit.edu	37	5	35065415	35065415	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:35065415C>T	uc003jjm.2	-	10	2175	c.1645G>A	c.(1645-1647)GTG>ATG	p.V549M	PRLR_uc003jjg.1_Intron|PRLR_uc003jjh.1_Intron|PRLR_uc003jji.1_Intron|PRLR_uc003jjj.1_Intron|PRLR_uc003jjk.1_Intron|PRLR_uc003jjl.3_Missense_Mutation_p.V448M	NM_000949	NP_000940	P16471	PRLR_HUMAN	prolactin receptor precursor	549	Cytoplasmic (Potential).				activation of JAK2 kinase activity|activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|embryo implantation|lactation|steroid biosynthetic process|T cell activation	cell surface|extracellular region|integral to membrane	metal ion binding|ornithine decarboxylase activator activity|peptide hormone binding|prolactin receptor activity|protein homodimerization activity			ovary(2)|skin(1)	3	all_lung(31;3.83e-05)		COAD - Colon adenocarcinoma(61;0.174)|Colorectal(62;0.229)		Dromostanolone(DB00858)|Fluoxymesterone(DB01185)|Pegvisomant(DB00082)|Somatropin recombinant(DB00052)	ACCCCGGACACCTTGGCATAC	0.498													30	40					0	0	1	0	0
SPEF2	79925	broad.mit.edu	37	5	35667297	35667297	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:35667297G>A	uc003jjo.2	+	9	1402	c.1291G>A	c.(1291-1293)GAA>AAA	p.E431K	SPEF2_uc003jjn.1_Missense_Mutation_p.E431K|SPEF2_uc003jjq.3_Missense_Mutation_p.E431K	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	431					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			AGTATGTGCAGAAATTTTGGA	0.328													13	32					0	0	1	0	0
SPEF2	79925	broad.mit.edu	37	5	35700683	35700683	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:35700683G>A	uc003jjo.2	+	16	2338	c.2227G>A	c.(2227-2229)GGC>AGC	p.G743S	SPEF2_uc003jjq.3_Missense_Mutation_p.G738S|SPEF2_uc003jjp.1_Missense_Mutation_p.G229S	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	743	Potential.				nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			AGCTCTTACAGGCTGCAATAG	0.408													7	26					0	0	1	0	0
SPEF2	79925	broad.mit.edu	37	5	35776358	35776358	+	Splice_Site	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:35776358G>A	uc003jjo.2	+	29	4190	c.4079_splice	c.e29-1	p.E1360_splice	SPEF2_uc003jjp.1_Splice_Site_p.E846_splice|SPEF2_uc003jjr.2_Splice_Site	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1						nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			TTTGCAAATAGAAATAGCCAC	0.338													15	35					0	0	1	0	0
IL7R	3575	broad.mit.edu	37	5	35873660	35873660	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:35873660C>T	uc003jjs.2	+	5	705	c.616C>T	c.(616-618)CGA>TGA	p.R206*	IL7R_uc011coo.1_Nonsense_Mutation_p.R206*|IL7R_uc011cop.1_Intron	NM_002185	NP_002176	P16871	IL7RA_HUMAN	interleukin 7 receptor precursor	206	Extracellular (Potential).|Fibronectin type-III.				immune response|regulation of DNA recombination	extracellular region|integral to membrane	antigen binding|interleukin-7 receptor activity			ovary(3)|breast(1)|skin(1)	5	all_lung(31;0.00015)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.187)|Colorectal(62;0.202)			GATTAAAGTTCGATCCATCCC	0.423													20	31					0	0	1	0	0
UGT3A1	133688	broad.mit.edu	37	5	35965770	35965770	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:35965770G>A	uc003jjv.1	-	4	718	c.561C>T	c.(559-561)TTC>TTT	p.F187F	UGT3A1_uc003jjw.1_RNA|UGT3A1_uc011coq.1_Silent_p.F187F|UGT3A1_uc011cor.1_Silent_p.F153F|UGT3A1_uc003jjy.1_Silent_p.F133F	NM_152404	NP_689617	Q6NUS8	UD3A1_HUMAN	UDP glycosyltransferase 3 family, polypeptide A1	187	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|central_nervous_system(1)	3	all_lung(31;0.000197)		Epithelial(62;0.107)|Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			GCAAGGAAGGGAATACTGGAA	0.468													30	50					0	0	1	0	0
UGT3A2	167127	broad.mit.edu	37	5	36035913	36035913	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:36035913C>T	uc003jjz.1	-	7	1552	c.1459G>A	c.(1459-1461)GAC>AAC	p.D487N	UGT3A2_uc011cos.1_Missense_Mutation_p.D453N|UGT3A2_uc011cot.1_Missense_Mutation_p.D185N	NM_174914	NP_777574	Q3SY77	UD3A2_HUMAN	UDP glycosyltransferase 3 family, polypeptide A2	487	Helical; (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6	all_lung(31;0.000179)		Lung(74;0.111)|Epithelial(62;0.113)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			ACAAAAACGTCGAGCAGGTAC	0.612													23	28					0	0	1	0	0
NUP155	9631	broad.mit.edu	37	5	37342742	37342742	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:37342742G>A	uc003jku.1	-	10	1120	c.1002C>T	c.(1000-1002)ATC>ATT	p.I334I	NUP155_uc003jkt.1_Silent_p.I275I|NUP155_uc010iuz.1_Silent_p.I334I	NM_153485	NP_705618	O75694	NU155_HUMAN	nucleoporin 155kDa isoform 1	334					carbohydrate metabolic process|glucose transport|mRNA transport|nucleocytoplasmic transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	nuclear membrane|nuclear pore	protein binding|structural constituent of nuclear pore|transporter activity			ovary(1)	1	all_lung(31;0.000137)		COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			CAGAACGATCGATGGTCCTAA	0.318													5	20					0	0	1	0	0
GDNF	2668	broad.mit.edu	37	5	37815934	37815934	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:37815934G>A	uc011cpi.1	-	3	655	c.455C>T	c.(454-456)GCT>GTT	p.A152V	GDNF_uc011cpc.1_Missense_Mutation_p.A74V|GDNF_uc011cpd.1_Missense_Mutation_p.A100V|GDNF_uc011cpe.1_Missense_Mutation_p.A126V|GDNF_uc011cpf.1_Missense_Mutation_p.A126V|GDNF_uc011cpg.1_Missense_Mutation_p.A169V|GDNF_uc011cph.1_Missense_Mutation_p.A143V	NM_000514	NP_000505	P39905	GDNF_HUMAN	glial cell derived neurotrophic factor isoform 1	152					adult locomotory behavior|anti-apoptosis|axon guidance|branching involved in ureteric bud morphogenesis|enteric nervous system development|mRNA stabilization|negative regulation of neuron apoptosis|neural crest cell migration|peristalsis|positive regulation of branching involved in ureteric bud morphogenesis|positive regulation of dopamine secretion|positive regulation of monooxygenase activity|positive regulation of transcription from RNA polymerase II promoter|positive regulation of ureteric bud formation|postganglionic parasympathetic nervous system development|regulation of dopamine uptake|signal transduction|sympathetic nervous system development	extracellular region	growth factor activity|protein homodimerization activity				0	all_lung(31;0.00118)					CGTTGTCTCAGCTGCATCGCA	0.443													31	56					0	0	1	0	0
HEATR7B2	133558	broad.mit.edu	37	5	40999860	40999860	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:40999860G>A	uc003jmj.3	-	40	4994	c.4504C>T	c.(4504-4506)CTG>TTG	p.L1502L	HEATR7B2_uc003jmi.3_Silent_p.L1057L	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	1502							binding			ovary(6)|central_nervous_system(2)	8						AGGATCCACAGAATTTCCTGG	0.473													19	76					0	0	1	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41009403	41009403	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:41009403G>A	uc003jmj.3	-	32	3889	c.3399C>T	c.(3397-3399)ATC>ATT	p.I1133I	HEATR7B2_uc003jmi.3_Silent_p.I688I	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	1133	HEAT 12.						binding			ovary(6)|central_nervous_system(2)	8						CAACCCTGGCGATGTCATCTT	0.507													32	86					0	0	1	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41010132	41010132	+	Missense_Mutation	SNP	T	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:41010132T>A	uc003jmj.3	-	31	3675	c.3185A>T	c.(3184-3186)CAA>CTA	p.Q1062L	HEATR7B2_uc003jmi.3_Missense_Mutation_p.Q617L	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	1062							binding			ovary(6)|central_nervous_system(2)	8						TTCTTCTTTTTGTCTGAGGAC	0.408													22	38					0	0	1	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41012777	41012777	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:41012777C>T	uc003jmj.3	-	30	3533	c.3043G>A	c.(3043-3045)GGT>AGT	p.G1015S	HEATR7B2_uc003jmi.3_Missense_Mutation_p.G570S	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	1015							binding			ovary(6)|central_nervous_system(2)	8						CTCTCCAGACCGTCCAGCATT	0.478													34	68					0	0	1	0	0
C6	729	broad.mit.edu	37	5	41199882	41199882	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:41199882G>A	uc003jmk.2	-	4	643	c.433C>T	c.(433-435)CGC>TGC	p.R145C	C6_uc003jml.1_Missense_Mutation_p.R145C	NM_000065	NP_000056	P13671	CO6_HUMAN	complement component 6 precursor	145	LDL-receptor class A.				complement activation, classical pathway|cytolysis|innate immune response	membrane attack complex	protein binding			ovary(3)|central_nervous_system(2)|skin(2)	7		Breast(839;1.07e-05)|Ovarian(839;0.0228)|Lung SC(612;0.0548)|Lung NSC(810;0.128)|all_neural(839;0.157)				CTGTCACAGCGAAATTTATTC	0.413													33	78					0	0	1	0	0
OXCT1	5019	broad.mit.edu	37	5	41850261	41850261	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:41850261G>A	uc003jmn.2	-	5	766	c.435C>T	c.(433-435)ATC>ATT	p.I145I		NM_000436	NP_000427	P55809	SCOT1_HUMAN	3-oxoacid CoA transferase 1 precursor	145					cellular lipid metabolic process|ketone body catabolic process	mitochondrial matrix	3-oxoacid CoA-transferase activity|protein homodimerization activity			ovary(2)|large_intestine(1)	3					Succinic acid(DB00139)	CGCCTGCACGGATCCTCTCTG	0.507													12	33					0	0	1	0	0
ITGA1	3672	broad.mit.edu	37	5	52221309	52221309	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:52221309G>A	uc003jou.2	+	19	2657	c.2605G>A	c.(2605-2607)GGA>AGA	p.G869R	ITGA1_uc003jov.2_RNA|ITGA1_uc003jow.2_Missense_Mutation_p.G400R	NM_181501	NP_852478	P56199	ITA1_HUMAN	integrin, alpha 1 precursor	869	Extracellular (Potential).				axon guidance|cell-matrix adhesion|integrin-mediated signaling pathway|muscle contraction	integrin complex	collagen binding|receptor activity			ovary(2)|lung(1)	3		Lung NSC(810;5.05e-05)|Breast(144;0.0851)				AGTTTTTTCAGGAATTGAGGT	0.338													17	26					0	0	1	0	0
SKIV2L2	23517	broad.mit.edu	37	5	54618224	54618224	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:54618224C>T	uc003jpy.3	+	2	470	c.204C>T	c.(202-204)TTC>TTT	p.F68F	SKIV2L2_uc011cqi.1_Intron	NM_015360	NP_056175	P42285	SK2L2_HUMAN	superkiller viralicidic activity 2-like 2	68					maturation of 5.8S rRNA	catalytic step 2 spliceosome|nucleolus	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			ovary(1)|skin(1)	2		Lung NSC(810;0.000744)|Breast(144;0.181)|Prostate(74;0.194)				ATGTAGATTTCGAAGGTACAG	0.318													58	101					0	0	1	0	0
IL31RA	133396	broad.mit.edu	37	5	55202113	55202113	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:55202113C>T	uc003jql.2	+	9	1314	c.1249C>T	c.(1249-1251)CAA>TAA	p.Q417*	IL31RA_uc003jqk.2_Nonsense_Mutation_p.Q417*|IL31RA_uc011cqj.1_Nonsense_Mutation_p.Q275*|IL31RA_uc003jqm.2_Nonsense_Mutation_p.Q385*|IL31RA_uc003jqn.2_Nonsense_Mutation_p.Q417*|IL31RA_uc010iwa.1_Nonsense_Mutation_p.Q385*|IL31RA_uc003jqo.2_Nonsense_Mutation_p.Q275*	NM_139017	NP_620586	Q8NI17	IL31R_HUMAN	gp130-like monocyte receptor	385	Extracellular (Potential).|Fibronectin type-III 4.				anti-apoptosis|defense response|homeostatic process|JAK-STAT cascade|macrophage differentiation|MAPKKK cascade|monocyte differentiation|negative regulation of macrophage activation|positive regulation of cell proliferation|positive regulation of transcription, DNA-dependent|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|transmembrane receptor protein tyrosine kinase signaling pathway	integral to membrane|plasma membrane	cytokine receptor activity|protein kinase binding|transcription coactivator activity			ovary(1)	1		Lung NSC(810;6.93e-05)|Prostate(74;0.00741)|Breast(144;0.0544)|Ovarian(174;0.223)				GACGATCCAGCAAGGTAGCCA	0.493													8	38					0	0	1	0	0
ADAMTS6	11174	broad.mit.edu	37	5	64483850	64483850	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:64483850C>T	uc003jtp.2	-	22	3717	c.2903G>A	c.(2902-2904)TGG>TAG	p.W968*	ADAMTS6_uc003jto.2_RNA|ADAMTS6_uc003jtq.2_RNA	NM_197941	NP_922932	Q9UKP5	ATS6_HUMAN	ADAM metallopeptidase with thrombospondin type 1	968	TSP type-1 4.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Lung NSC(167;2.44e-06)|Prostate(74;0.014)|Ovarian(174;0.0549)|Breast(144;0.111)|Colorectal(97;0.235)		Lung(70;0.00942)		TACCTCAGACCAGTCCAAAGC	0.443													38	83					0	0	1	0	0
ADAMTS6	11174	broad.mit.edu	37	5	64483972	64483972	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:64483972G>A	uc003jtp.2	-	22	3595	c.2781C>T	c.(2779-2781)ATC>ATT	p.I927I	ADAMTS6_uc003jto.2_RNA|ADAMTS6_uc003jtq.2_RNA	NM_197941	NP_922932	Q9UKP5	ATS6_HUMAN	ADAM metallopeptidase with thrombospondin type 1	927	TSP type-1 3.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Lung NSC(167;2.44e-06)|Prostate(74;0.014)|Ovarian(174;0.0549)|Breast(144;0.111)|Colorectal(97;0.235)		Lung(70;0.00942)		CGATCTTCCTGATGCAGAGCA	0.527													88	141					0	0	1	0	0
MAST4	375449	broad.mit.edu	37	5	66396403	66396404	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:66396403_66396404CC>TT	uc003jut.1	+	7	554_555	c.486_487CC>TT	c.(484-489)CCCCGT>CCTTGT	p.R163C	MAST4_uc003jus.2_Missense_Mutation_p.R163C|MAST4_uc003juu.1_Missense_Mutation_p.R173C|MAST4_uc011cra.1_Missense_Mutation_p.R146C|MAST4_uc010ixa.2_RNA|MAST4_uc003juv.2_Missense_Mutation_p.R158C|MAST4_uc003juw.2_Missense_Mutation_p.R158C	NM_015183	NP_055998	O15021	MAST4_HUMAN	microtubule associated serine/threonine kinase	355						cytoplasm	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			lung(6)|ovary(2)|kidney(2)|breast(2)|central_nervous_system(1)	13		Lung NSC(167;8.56e-06)|Prostate(74;0.00637)|Ovarian(174;0.0563)|Breast(144;0.0586)|Colorectal(97;0.245)		Lung(70;0.011)		CGATGCGCCCCCGTTCCCGAAG	0.475													18	91					0	0	1	0	0
CD180	4064	broad.mit.edu	37	5	66479788	66479788	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:66479788G>A	uc003juy.2	-	3	1031	c.883C>T	c.(883-885)CAG>TAG	p.Q295*		NM_005582	NP_005573	Q99467	CD180_HUMAN	CD180 molecule precursor	295	Extracellular (Potential).|LRR 8.				inflammatory response|innate immune response	integral to membrane|plasma membrane	receptor activity			ovary(1)	1		Lung NSC(167;4.94e-05)|Prostate(74;0.00601)|Ovarian(174;0.0654)|Breast(144;0.198)|Colorectal(97;0.234)		Lung(70;0.0046)		GTGAAGCACTGAAATGTGGTG	0.463													40	57					0	0	1	0	0
MCCC2	64087	broad.mit.edu	37	5	70898446	70898446	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:70898446C>T	uc003kbs.3	+	5	635	c.497C>T	c.(496-498)CCC>CTC	p.P166L	MCCC2_uc010iyv.1_Missense_Mutation_p.P166L|MCCC2_uc003kbt.3_RNA|MCCC2_uc003kbu.1_Missense_Mutation_p.P35L	NM_022132	NP_071415	Q9HCC0	MCCB_HUMAN	methylcrotonoyl-Coenzyme A carboxylase 2 (beta)	166	Carboxyltransferase.				leucine catabolic process	mitochondrial inner membrane|mitochondrial matrix	ATP binding|methylcrotonoyl-CoA carboxylase activity			ovary(1)	1		Lung NSC(167;0.000697)|Prostate(74;0.0107)|Ovarian(174;0.0175)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;2.04e-54)	Biotin(DB00121)	AACAGGCTCCCCTGCATCTAC	0.418													18	35					0	0	1	0	0
ZNF366	167465	broad.mit.edu	37	5	71756999	71756999	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:71756999G>A	uc003kce.1	-	2	511	c.325C>T	c.(325-327)CTT>TTT	p.L109F		NM_152625	NP_689838	Q8N895	ZN366_HUMAN	zinc finger protein 366	109					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)|skin(1)	2		Lung NSC(167;0.0247)|Ovarian(174;0.0908)|Prostate(461;0.155)		OV - Ovarian serous cystadenocarcinoma(47;2.51e-53)		AGGTTGGGAAGGCCGTGGTTT	0.567													126	177					0	0	1	0	0
GFM2	84340	broad.mit.edu	37	5	74032749	74032749	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:74032749G>A	uc003kdh.1	-	15	1686	c.1382C>T	c.(1381-1383)GCC>GTC	p.A461V	GFM2_uc003kdi.1_Missense_Mutation_p.A414V|GFM2_uc010izj.1_Missense_Mutation_p.A493V|GFM2_uc010izk.1_RNA|GFM2_uc003kdj.1_Missense_Mutation_p.A461V	NM_032380	NP_115756	Q969S9	RRF2M_HUMAN	mitochondrial elongation factor G2 isoform 1	461					mitochondrial translation|ribosome disassembly	mitochondrion	GTP binding|GTPase activity				0		all_lung(232;0.00101)|Lung NSC(167;0.00278)|Ovarian(174;0.0129)|Breast(144;0.231)		OV - Ovarian serous cystadenocarcinoma(47;1.86e-56)		CTCCCGTTCGGCTCTACGAGC	0.468													28	55					0	0	1	0	0
PDE8B	8622	broad.mit.edu	37	5	76621481	76621481	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:76621481C>T	uc003kfa.2	+	3	562	c.517C>T	c.(517-519)CTT>TTT	p.L173F	PDE8B_uc003kfb.2_Missense_Mutation_p.L153F|PDE8B_uc003kfc.2_Missense_Mutation_p.L173F|PDE8B_uc003kfd.2_Missense_Mutation_p.L173F|PDE8B_uc003kfe.2_Missense_Mutation_p.L173F	NM_003719	NP_003710	O95263	PDE8B_HUMAN	phosphodiesterase 8B isoform 1	173					cyclic nucleotide metabolic process|regulation of transcription, DNA-dependent	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding|two-component response regulator activity				0		all_lung(232;0.00043)|Lung NSC(167;0.00114)|Ovarian(174;0.0107)|Prostate(461;0.0605)		OV - Ovarian serous cystadenocarcinoma(54;2.21e-49)|Epithelial(54;5.82e-43)|all cancers(79;4.06e-38)		TGAATGCTTTCTTGATAAGCA	0.423													144	324					0	0	1	0	0
SCAMP1	9522	broad.mit.edu	37	5	77684718	77684718	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:77684718C>T	uc003kfl.2	+	2	272	c.115C>T	c.(115-117)CCA>TCA	p.P39S	SCAMP1_uc010jaa.2_RNA|SCAMP1_uc011ctc.1_Intron|SCAMP1_uc011ctd.1_RNA	NM_004866	NP_004857	O15126	SCAM1_HUMAN	secretory carrier membrane protein 1	39	Cytoplasmic (Potential).				post-Golgi vesicle-mediated transport|protein transport	integral to membrane|recycling endosome membrane|trans-Golgi network	protein binding				0		all_lung(232;0.000397)|Lung NSC(167;0.00105)|Ovarian(174;0.0105)|Prostate(461;0.214)		OV - Ovarian serous cystadenocarcinoma(54;1.9e-46)|Epithelial(54;9.4e-43)|all cancers(79;1.12e-37)		TGAATATAATCCATTCTCGGA	0.289													4	10					0	0	1	0	0
THBS4	7060	broad.mit.edu	37	5	79361257	79361257	+	Missense_Mutation	SNP	G	A	A	rs147141222	byFrequency	TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:79361257G>A	uc003kgh.2	+	10	1474	c.1151G>A	c.(1150-1152)CGA>CAA	p.R384Q		NM_003248	NP_003239	P35443	TSP4_HUMAN	thrombospondin 4 precursor	384	EGF-like 3; calcium-binding (Potential).				endothelial cell-cell adhesion|myoblast migration|negative regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of neutrophil chemotaxis|positive regulation of peptidyl-tyrosine phosphorylation	basement membrane|extracellular space	calcium ion binding|heparin binding|integrin binding|structural molecule activity				0		Lung NSC(167;0.00328)|all_lung(232;0.00355)|Ovarian(174;0.0261)		OV - Ovarian serous cystadenocarcinoma(54;6.3e-45)|Epithelial(54;1.77e-39)|all cancers(79;3.2e-34)		GATGAGTGTCGAAATGGAGCG	0.388													35	62					0	0	1	0	0
RASGRF2	5924	broad.mit.edu	37	5	80504233	80504233	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:80504233G>A	uc003kha.1	+	22	3132	c.3132G>A	c.(3130-3132)ATG>ATA	p.M1044I	RNU5E_uc011cto.1_Intron|RASGRF2_uc011ctn.1_RNA	NM_006909	NP_008840	O14827	RGRF2_HUMAN	Ras protein-specific guanine	1044	Ras-GEF.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol|endoplasmic reticulum membrane|plasma membrane	protein binding|Rho guanyl-nucleotide exchange factor activity			breast(5)|ovary(3)|large_intestine(2)|central_nervous_system(1)|skin(1)	12		Lung NSC(167;0.00498)|all_lung(232;0.00531)|Ovarian(174;0.0357)		OV - Ovarian serous cystadenocarcinoma(54;4.22e-42)|Epithelial(54;4.04e-35)|all cancers(79;2.52e-29)		CTTACATTATGAAAACCAGCC	0.408													7	23					0	0	1	0	0
GPR98	84059	broad.mit.edu	37	5	89921011	89921011	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:89921011C>T	uc003kju.2	+	6	719	c.623C>T	c.(622-624)CCC>CTC	p.P208L	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	208	Calx-beta 2.|Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		ATCACCTTTCCCCCTGGCAGA	0.433													9	24					0	0	1	0	0
GPR98	84059	broad.mit.edu	37	5	89971928	89971928	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:89971928G>A	uc003kju.2	+	25	5441	c.5345G>A	c.(5344-5346)GGA>GAA	p.G1782E	GPR98_uc003kjt.2_5'UTR|GPR98_uc010jba.1_RNA	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	1782	Extracellular (Potential).|Calx-beta 12.				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		TTTCAACCAGGAGAAAGATAT	0.299													10	19					0	0	1	0	0
GPR98	84059	broad.mit.edu	37	5	89979454	89979454	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:89979454G>A	uc003kju.2	+	28	5812	c.5716G>A	c.(5716-5718)GAC>AAC	p.D1906N	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	1906	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		TTGGAACATAGACTCTGATCC	0.408													10	21					0	0	1	0	0
GPR98	84059	broad.mit.edu	37	5	89990378	89990378	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:89990378C>T	uc003kju.2	+	33	7901	c.7805C>T	c.(7804-7806)CCC>CTC	p.P2602L	GPR98_uc003kjt.2_Missense_Mutation_p.P308L|GPR98_uc003kjv.2_Missense_Mutation_p.P202L	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	2602	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		CAGGAGCAGCCCCAAACCTTG	0.468													102	143					0	0	1	0	0
GPR98	84059	broad.mit.edu	37	5	90049474	90049474	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:90049474G>A	uc003kju.2	+	54	11301	c.11205G>A	c.(11203-11205)GTG>GTA	p.V3735V	GPR98_uc003kjt.2_Silent_p.V1441V|GPR98_uc003kjv.2_Silent_p.V1335V	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	3735	Calx-beta 24.|Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		CAGAGGTTGTGATTGTAACCC	0.383													27	41					0	0	1	0	0
ARSK	153642	broad.mit.edu	37	5	94903657	94903657	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:94903657C>T	uc003kld.2	+	3	478	c.320C>T	c.(319-321)CCA>CTA	p.P107L	ARSK_uc010jbg.2_5'UTR|ARSK_uc011cum.1_RNA	NM_198150	NP_937793	Q6UWY0	ARSK_HUMAN	arylsulfatase K precursor	107						extracellular region	arylsulfatase activity|metal ion binding			pancreas(1)	1		all_cancers(142;3.38e-06)|all_epithelial(76;6.57e-09)|all_lung(232;0.00307)|Lung NSC(167;0.00452)|Ovarian(225;0.00473)		all cancers(79;6.5e-16)		GGTCTAGATCCAAATTATACA	0.383													18	32					0	0	1	0	0
EPB41L4A	64097	broad.mit.edu	37	5	111602023	111602023	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:111602023G>A	uc003kpv.1	-	5	614	c.340C>T	c.(340-342)CAG>TAG	p.Q114*	EPB41L4A_uc003kpw.1_Nonsense_Mutation_p.Q114*	NM_022140	NP_071423	Q9HCS5	E41LA_HUMAN	erythrocyte protein band 4.1-like 4	114	FERM.					cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding			ovary(1)	1		all_cancers(142;4.93e-06)|all_epithelial(76;2.28e-08)|Prostate(80;0.000244)|Colorectal(10;0.000788)|Ovarian(225;0.0448)|Lung NSC(167;0.126)|all_lung(232;0.135)		OV - Ovarian serous cystadenocarcinoma(64;6.24e-09)|Epithelial(69;1.43e-07)|all cancers(49;2.78e-05)|COAD - Colon adenocarcinoma(37;0.0467)|Colorectal(14;0.0791)		AAGAAAAACTGATATCTAAAA	0.463													11	13					0	0	1	0	0
YTHDC2	64848	broad.mit.edu	37	5	112901647	112901647	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:112901647C>T	uc003kqn.2	+	21	2956	c.2773C>T	c.(2773-2775)CTT>TTT	p.L925F		NM_022828	NP_073739	Q9H6S0	YTDC2_HUMAN	YTH domain containing 2	925							ATP binding|ATP-dependent helicase activity|nucleic acid binding			skin(2)|central_nervous_system(1)	3		all_cancers(142;7.69e-05)|all_epithelial(76;6.42e-07)|Colorectal(10;0.00278)|Prostate(80;0.00955)|Ovarian(225;0.0444)|Lung NSC(810;0.143)|all_lung(232;0.163)|Breast(839;0.244)		OV - Ovarian serous cystadenocarcinoma(64;7.2e-08)|Epithelial(69;8.83e-08)|all cancers(49;6.9e-06)|COAD - Colon adenocarcinoma(37;0.0458)|Colorectal(14;0.0594)		AAAGAATTTTCTTTCACAGGC	0.378													28	44					0	0	1	0	0
AQPEP	206338	broad.mit.edu	37	5	115335570	115335570	+	Missense_Mutation	SNP	G	A	A	rs140991083		TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:115335570G>A	uc003kro.2	+	7	1650	c.1486G>A	c.(1486-1488)GAA>AAA	p.E496K	AQPEP_uc003krp.2_RNA|AQPEP_uc003krq.2_RNA|AQPEP_uc003krr.2_RNA|AQPEP_uc003krs.2_RNA	NM_173800	NP_776161	Q6Q4G3	AMPQ_HUMAN	laeverin	496	Lumenal (Potential).				proteolysis	integral to membrane	metallopeptidase activity|zinc ion binding	p.E496K(1)			0						TGAAATACAGGAACTCTTTGA	0.358													16	46					0	0	1	0	0
AQPEP	206338	broad.mit.edu	37	5	115338984	115338984	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:115338984G>A	uc003kro.2	+	12	2108	c.1944G>A	c.(1942-1944)GTG>GTA	p.V648V	AQPEP_uc003krp.2_RNA|AQPEP_uc003krq.2_RNA|AQPEP_uc003krr.2_RNA|AQPEP_uc003krs.2_RNA	NM_173800	NP_776161	Q6Q4G3	AMPQ_HUMAN	laeverin	648	Lumenal (Potential).				proteolysis	integral to membrane	metallopeptidase activity|zinc ion binding				0						ATGACTGGGTGATTTTGAATT	0.294													24	37					0	0	1	0	0
AQPEP	206338	broad.mit.edu	37	5	115348125	115348125	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:115348125C>T	uc003kro.2	+	15	2466	c.2302C>T	c.(2302-2304)CGT>TGT	p.R768C	AQPEP_uc003krp.2_RNA|AQPEP_uc003krq.2_RNA|AQPEP_uc003krr.2_RNA|AQPEP_uc003krs.2_RNA	NM_173800	NP_776161	Q6Q4G3	AMPQ_HUMAN	laeverin	768	Lumenal (Potential).				proteolysis	integral to membrane	metallopeptidase activity|zinc ion binding				0						AACTATAATTCGTGAAAATGT	0.289													33	67					0	0	1	0	0
FAM170A	340069	broad.mit.edu	37	5	118968492	118968492	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:118968492G>A	uc003ksm.2	+	2	330	c.120G>A	c.(118-120)GTG>GTA	p.V40V	FAM170A_uc003ksl.2_Silent_p.V40V|FAM170A_uc003ksn.2_Silent_p.V40V|FAM170A_uc003kso.2_Intron	NM_182761	NP_877438	A1A519	F170A_HUMAN	family with sequence similarity 170, member A	40						intracellular	zinc ion binding			skin(1)	1						CCACTAGAGTGGCCAAAGGCT	0.507													48	44					0	0	1	0	0
ADAMTS19	171019	broad.mit.edu	37	5	129040031	129040031	+	Missense_Mutation	SNP	G	T	T	rs147880101		TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:129040031G>T	uc003kvb.1	+	21	3241	c.3241G>T	c.(3241-3243)GAC>TAC	p.D1081Y	ADAMTS19_uc010jdh.1_RNA	NM_133638	NP_598377	Q8TE59	ATS19_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1081	TSP type-1 4.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(5)|breast(2)|lung(1)|skin(1)	9		all_cancers(142;0.0148)|Prostate(80;0.0494)|Breast(839;0.238)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	OV - Ovarian serous cystadenocarcinoma(64;0.222)		GGAGGCTGAAGACTGTGAGGA	0.448													41	74					1.96642e-18	1.99635e-18	1	1	0
ACSL6	23305	broad.mit.edu	37	5	131298347	131298347	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:131298347G>A	uc010jdo.1	-	18	1746	c.1663C>T	c.(1663-1665)CGG>TGG	p.R555W	ACSL6_uc003kvv.1_RNA|ACSL6_uc003kvx.1_Missense_Mutation_p.R580W|ACSL6_uc003kvy.1_Missense_Mutation_p.R580W|ACSL6_uc003kwb.2_Missense_Mutation_p.R545W|ACSL6_uc003kvz.1_Missense_Mutation_p.R480W|ACSL6_uc003kwa.1_Missense_Mutation_p.R566W|ACSL6_uc003kvw.1_Missense_Mutation_p.R201W|ACSL6_uc010jdn.1_Missense_Mutation_p.R570W	NM_015256	NP_056071	Q9UKU0	ACSL6_HUMAN	acyl-CoA synthetase long-chain family member 6	555	Cytoplasmic (Potential).				fatty acid metabolic process|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane|microsome|mitochondrial outer membrane|peroxisomal membrane|plasma membrane	ATP binding|long-chain fatty acid-CoA ligase activity			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3		all_cancers(142;0.107)|Breast(839;0.198)|Lung NSC(810;0.216)|all_lung(232;0.248)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			TGCTTTTTCCGATCAATAATT	0.428													23	28					0	0	1	0	0
GDF9	2661	broad.mit.edu	37	5	132198244	132198244	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:132198244G>A	uc003kxz.1	-	2	654	c.402C>T	c.(400-402)ATC>ATT	p.I134I	GDF9_uc011cxj.1_Silent_p.I46I	NM_005260	NP_005251	O60383	GDF9_HUMAN	growth differentiation factor 9 precursor	134					female gamete generation|transforming growth factor beta receptor signaling pathway	extracellular space	cytokine activity|growth factor activity			skin(1)	1		all_cancers(142;0.105)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			CTGATGGAAGGATTCCTAAGA	0.373													16	24					0	0	1	0	0
TRPC7	57113	broad.mit.edu	37	5	135693016	135693016	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:135693016C>A	uc003lbn.1	-	1	60	c.57G>T	c.(55-57)AAG>AAT	p.K19N	TRPC7_uc010jef.1_Missense_Mutation_p.K11N|TRPC7_uc010jeg.1_RNA|TRPC7_uc010jeh.1_Missense_Mutation_p.K11N|TRPC7_uc010jei.1_Missense_Mutation_p.K11N|TRPC7_uc010jej.1_Translation_Start_Site	NM_020389	NP_065122	Q9HCX4	TRPC7_HUMAN	transient receptor potential cation channel,	20	Cytoplasmic (Potential).				axon guidance|platelet activation	integral to membrane|plasma membrane	calcium channel activity|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			GGCGACGGCCCTTCTCCCTCA	0.592													4	119					0.150653	0.150955	1	1	0
PKD2L2	27039	broad.mit.edu	37	5	137230203	137230203	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:137230203C>T	uc003lby.2	+	4	485	c.429C>T	c.(427-429)GTC>GTT	p.V143V	PKD2L2_uc010jep.1_Silent_p.V83V|PKD2L2_uc003lbw.1_Silent_p.V143V|PKD2L2_uc003lbx.2_Silent_p.V143V	NM_014386	NP_055201	Q9NZM6	PK2L2_HUMAN	polycystic kidney disease 2-like 2	143	Extracellular (Potential).					integral to membrane	calcium ion binding|ion channel activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0109)			CATGCAAAGTCTATTCATCTT	0.348													20	53					0	0	1	0	0
CDC23	8697	broad.mit.edu	37	5	137542246	137542246	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:137542246G>A	uc003lcl.2	-	3	393	c.362C>T	c.(361-363)TCC>TTC	p.S121F	CDC23_uc003lcm.1_Missense_Mutation_p.S121F	NM_004661	NP_004652	Q9UJX2	CDC23_HUMAN	cell division cycle protein 23	121					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|G1 phase of mitotic cell cycle|mitotic cell cycle spindle assembly checkpoint|mitotic metaphase plate congression|mitotic metaphase/anaphase transition|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination|regulation of exit from mitosis	anaphase-promoting complex|cytosol|nucleoplasm	binding|ubiquitin-protein ligase activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0109)			CAGATATCTGGAATACATATA	0.388													31	46					0	0	1	0	0
ANKHD1-EIF4EBP3	404734	broad.mit.edu	37	5	139907953	139907953	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:139907953C>T	uc003lfs.1	+	29	5546	c.5422C>T	c.(5422-5424)CCT>TCT	p.P1808S	ANKHD1_uc003lfr.2_Missense_Mutation_p.P1808S|ANKHD1-EIF4EBP3_uc011czh.1_Missense_Mutation_p.P547S|ANKHD1_uc003lfw.2_Missense_Mutation_p.P446S|ANKHD1_uc010jfl.2_Missense_Mutation_p.P243S|ANKHD1-EIF4EBP3_uc003lfx.1_5'UTR	NM_020690	NP_065741	Q8IWZ2	Q8IWZ2_HUMAN	ANKHD1-EIF4EBP3 protein	1808						cytoplasm|nucleus	RNA binding			ovary(6)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AAATGCATTTCCTTTGGGTGC	0.408													38	75					0	0	1	0	0
ANKHD1-EIF4EBP3	404734	broad.mit.edu	37	5	139909125	139909125	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:139909125G>A	uc003lfs.1	+	29	6718	c.6594G>A	c.(6592-6594)AAG>AAA	p.K2198K	ANKHD1_uc003lfr.2_Silent_p.K2198K|ANKHD1-EIF4EBP3_uc011czh.1_Silent_p.K937K|ANKHD1_uc003lfw.2_Silent_p.K836K|ANKHD1_uc010jfl.2_Silent_p.K633K|ANKHD1-EIF4EBP3_uc003lfx.1_Silent_p.K335K	NM_020690	NP_065741	Q8IWZ2	Q8IWZ2_HUMAN	ANKHD1-EIF4EBP3 protein	2198						cytoplasm|nucleus	RNA binding			ovary(6)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CAGCAAATAAGTCTTTGCCAC	0.473													56	89					0	0	1	0	0
PCDHA4	56144	broad.mit.edu	37	5	140188634	140188634	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:140188634C>T	uc003lhi.2	+	1	1963	c.1862C>T	c.(1861-1863)CCG>CTG	p.P621L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhh.1_Missense_Mutation_p.P621L|PCDHA4_uc011daa.1_Missense_Mutation_p.P621L	NM_018907	NP_061730	Q9UN74	PCDA4_HUMAN	protocadherin alpha 4 isoform 1 precursor	621	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(4)|skin(2)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCGCGCATCCCGTTCCGCGTG	0.672													36	65					0	0	1	0	0
PCDHA9	9752	broad.mit.edu	37	5	140229541	140229541	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:140229541C>T	uc003lhu.2	+	1	2185	c.1461C>T	c.(1459-1461)AAC>AAT	p.N487N	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lht.1_Silent_p.N487N	NM_031857	NP_114063	Q9Y5H5	PCDA9_HUMAN	protocadherin alpha 9 isoform 1 precursor	487	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			large_intestine(2)|ovary(2)|skin(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGCAGGAGAACGCCCTGGTGT	0.667													47	81					0	0	1	0	0
PCDHAC2	56134	broad.mit.edu	37	5	140347637	140347637	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:140347637G>A	uc003lii.2	+	1	1526	c.1286G>A	c.(1285-1287)CGA>CAA	p.R429Q	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Intron|PCDHA13_uc003lif.2_Intron|PCDHAC1_uc003lih.2_Intron|PCDHAC2_uc011dag.1_Missense_Mutation_p.R429Q	NM_018899	NP_061722	Q9Y5I4	PCDC2_HUMAN	protocadherin alpha subfamily C, 2 isoform 1	429	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding	p.R429R(1)		ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCACTGGACCGAGAGCGGGTG	0.572													56	97					0	0	1	0	0
PCDHB1	29930	broad.mit.edu	37	5	140431353	140431353	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:140431353G>A	uc003lik.1	+	1	375	c.298G>A	c.(298-300)GAC>AAC	p.D100N		NM_013340	NP_037472	Q9Y5F3	PCDB1_HUMAN	protocadherin beta 1 precursor	100	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TGGCAAAGCCGACCCTTGTGT	0.522													49	65					0	0	1	0	0
PCDHB1	29930	broad.mit.edu	37	5	140431406	140431406	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:140431406C>T	uc003lik.1	+	1	428	c.351C>T	c.(349-351)TTC>TTT	p.F117F		NM_013340	NP_037472	Q9Y5F3	PCDB1_HUMAN	protocadherin beta 1 precursor	117	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TGCAGTCCTTCCGGGCCGAGG	0.512													37	46					0	0	1	0	0
PCDHB2	56133	broad.mit.edu	37	5	140474550	140474550	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:140474550G>A	uc003lil.2	+	1	314	c.176G>A	c.(175-177)GGA>GAA	p.G59E	PCDHB2_uc003lim.1_Intron	NM_018936	NP_061759	Q9Y5E7	PCDB2_HUMAN	protocadherin beta 2 precursor	59	Extracellular (Potential).|Cadherin 1.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(3)|upper_aerodigestive_tract(2)|pancreas(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CTGGAGATAGGAGAACTTGCT	0.498													33	44					0	0	1	0	0
PCDHB2	56133	broad.mit.edu	37	5	140475313	140475313	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:140475313C>T	uc003lil.2	+	1	1077	c.939C>T	c.(937-939)TCC>TCT	p.S313S	PCDHB2_uc003lim.1_5'UTR	NM_018936	NP_061759	Q9Y5E7	PCDB2_HUMAN	protocadherin beta 2 precursor	313	Extracellular (Potential).|Cadherin 3.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(3)|upper_aerodigestive_tract(2)|pancreas(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ATTTCGAATCCATCCAGACAT	0.418													23	65					0	0	1	0	0
PCDHB2	56133	broad.mit.edu	37	5	140476702	140476702	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:140476702C>T	uc003lil.2	+	1	2466	c.2328C>T	c.(2326-2328)TTC>TTT	p.F776F	PCDHB2_uc003lim.1_Silent_p.F437F	NM_018936	NP_061759	Q9Y5E7	PCDB2_HUMAN	protocadherin beta 2 precursor	776	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(3)|upper_aerodigestive_tract(2)|pancreas(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TCCCCAACTTCGTTGCTCAGG	0.507													24	64					0	0	1	0	0
PCDHB3	56132	broad.mit.edu	37	5	140481699	140481699	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:140481699C>T	uc003lio.2	+	1	1466	c.1466C>T	c.(1465-1467)TCG>TTG	p.S489L	uc003lin.2_Intron	NM_018937	NP_061760	Q9Y5E6	PCDB3_HUMAN	protocadherin beta 3 precursor	489	Extracellular (Potential).|Cadherin 5.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GTAACCTACTCGCTGCTGCCG	0.642													41	110					0	0	1	0	0
PCDHB8	56128	broad.mit.edu	37	5	140559700	140559700	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:140559700G>A	uc011dai.1	+	1	2271	c.2085G>A	c.(2083-2085)TTG>TTA	p.L695L	PCDHB16_uc003liv.2_5'Flank|PCDHB16_uc010jfw.1_5'Flank	NM_019120	NP_061993	Q9UN66	PCDB8_HUMAN	protocadherin beta 8 precursor	695	Helical; (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TGGTGGCGTTGGCCTCGGTGT	0.677													39	139					0	0	1	0	0
PCDHB9	56127	broad.mit.edu	37	5	140569145	140569145	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:140569145G>A	uc003liw.1	+	3	2254	c.2254G>A	c.(2254-2256)GAG>AAG	p.E752K	PCDHB10_uc003lix.2_5'Flank	NM_019119	NP_061992	Q9Y5E1	PCDB9_HUMAN	protocadherin beta 9 precursor	752	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CTACCAGTACGAGGTGTGTCT	0.622													95	151					0	0	1	0	0
PCDHB10	56126	broad.mit.edu	37	5	140572435	140572435	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:140572435C>T	uc003lix.2	+	1	484	c.310C>T	c.(310-312)CTG>TTG	p.L104L		NM_018930	NP_061753	Q9UN67	PCDBA_HUMAN	protocadherin beta 10 precursor	104	Extracellular (Potential).|Cadherin 1.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GCCCTGTATGCTGTATTTCCA	0.443													14	22					0	0	1	0	0
PCDHGA1	56114	broad.mit.edu	37	5	140711128	140711128	+	Missense_Mutation	SNP	C	T	T	rs145926133		TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:140711128C>T	uc003lji.1	+	1	877	c.877C>T	c.(877-879)CGT>TGT	p.R293C	PCDHGA1_uc011dan.1_Missense_Mutation_p.R293C	NM_018912	NP_061735	Q9Y5H4	PCDG1_HUMAN	protocadherin gamma subfamily A, 1 isoform 1	293	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|breast(1)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCAAATATTTCGTTTAGATTC	0.428													17	40					0	0	1	0	0
PCDHGB1	56104	broad.mit.edu	37	5	140730414	140730414	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:140730414C>T	uc003ljo.1	+	1	587	c.587C>T	c.(586-588)CCT>CTT	p.P196L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc011daq.1_Missense_Mutation_p.P196L	NM_018922	NP_061745	Q9Y5G3	PCDGD_HUMAN	protocadherin gamma subfamily B, 1 isoform 1	196	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTGGAAAAACCTCTAGACAGG	0.483													46	110					0	0	1	0	0
KCTD16	57528	broad.mit.edu	37	5	143853460	143853460	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:143853460C>T	uc003lnm.1	+	4	1699	c.1070C>T	c.(1069-1071)TCA>TTA	p.S357L	KCTD16_uc003lnn.1_Missense_Mutation_p.S357L	NM_020768	NP_065819	Q68DU8	KCD16_HUMAN	potassium channel tetramerisation domain	357						cell junction|postsynaptic membrane|presynaptic membrane|voltage-gated potassium channel complex	voltage-gated potassium channel activity			large_intestine(2)|ovary(1)|skin(1)	4		all_hematologic(541;0.118)	KIRC - Kidney renal clear cell carcinoma(527;0.00111)|Kidney(363;0.00176)			ATCCAACAGTCAGAGATGCGG	0.537													28	79					0	0	1	0	0
SH3RF2	153769	broad.mit.edu	37	5	145393487	145393487	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:145393487C>T	uc003lnt.2	+	5	1160	c.922C>T	c.(922-924)CTC>TTC	p.L308F	SH3RF2_uc011dbl.1_Missense_Mutation_p.L308F	NM_152550	NP_689763	Q8TEC5	SH3R2_HUMAN	SH3 domain containing ring finger 2	308							ligase activity|protein phosphatase 1 binding|zinc ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			CTTGAACACTCTCAACCGGAT	0.587													62	134					0	0	1	0	0
TCERG1	10915	broad.mit.edu	37	5	145862240	145862240	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:145862240C>T	uc003lob.2	+	13	2012	c.1972C>T	c.(1972-1974)CCT>TCT	p.P658S	TCERG1_uc003loc.2_Missense_Mutation_p.P637S	NM_006706	NP_006697	O14776	TCRG1_HUMAN	transcription elongation regulator 1 isoform 1	658					regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nucleus	protein binding|transcription coactivator activity			ovary(1)|skin(1)	2		Lung NSC(249;0.00188)|all_lung(500;0.00307)|all_neural(839;0.0424)|Breast(839;0.0743)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GGCCATTGTCCCTCTGGAGGC	0.408													13	24					0	0	1	0	0
DPYSL3	1809	broad.mit.edu	37	5	146778731	146778731	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:146778731C>T	uc003lon.1	-	11	1305	c.1195G>A	c.(1195-1197)GGA>AGA	p.G399R	DPYSL3_uc003loo.2_Missense_Mutation_p.G513R	NM_001387	NP_001378	Q14195	DPYL3_HUMAN	dihydropyrimidinase-like 3	399					axon guidance|pyrimidine base catabolic process|signal transduction	cytosol|growth cone	dihydropyrimidinase activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GATATTCTTCCCTTGCGGGGA	0.502													65	86					0	0	1	0	0
SPINK5	11005	broad.mit.edu	37	5	147449895	147449895	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:147449895C>T	uc003lox.2	+	3	164	c.91C>T	c.(91-93)CAT>TAT	p.H31Y	SPINK5_uc010jgq.1_RNA|SPINK5_uc010jgs.1_Missense_Mutation_p.H3Y|SPINK5_uc010jgr.2_Intron|SPINK5_uc003low.2_Missense_Mutation_p.H31Y|SPINK5_uc003loy.2_Missense_Mutation_p.H31Y	NM_006846	NP_006837	Q9NQ38	ISK5_HUMAN	serine peptidase inhibitor, Kazal type 5 isoform	31	Kazal-like 1; atypical.				anagen|epithelial cell differentiation|extracellular matrix organization|hair cell differentiation|negative regulation of angiogenesis|negative regulation of immune response|regulation of T cell differentiation	cell cortex|cytosol|endoplasmic reticulum membrane|extracellular region|lamellar body|perinuclear region of cytoplasm	serine-type endopeptidase inhibitor activity			skin(2)|ovary(1)|breast(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGAAATGTGCCATGAATTTCA	0.264													13	42					0	0	1	0	0
SPINK5	11005	broad.mit.edu	37	5	147516549	147516549	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:147516549G>A	uc003lox.2	+	33	3263	c.3190G>A	c.(3190-3192)GAA>AAA	p.E1064K	SPINK5_uc003loy.2_Missense_Mutation_p.E1094K	NM_006846	NP_006837	Q9NQ38	ISK5_HUMAN	serine peptidase inhibitor, Kazal type 5 isoform	1064					anagen|epithelial cell differentiation|extracellular matrix organization|hair cell differentiation|negative regulation of angiogenesis|negative regulation of immune response|regulation of T cell differentiation	cell cortex|cytosol|endoplasmic reticulum membrane|extracellular region|lamellar body|perinuclear region of cytoplasm	serine-type endopeptidase inhibitor activity			skin(2)|ovary(1)|breast(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTTCTAGGACGAATGACAGGA	0.393													69	128					0	0	1	0	0
HTR4	3360	broad.mit.edu	37	5	147928256	147928256	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:147928256G>A	uc003lpn.2	-	4	492	c.328C>T	c.(328-330)CAC>TAC	p.H110Y	HTR4_uc010jgu.1_RNA|HTR4_uc003lpi.1_Missense_Mutation_p.H110Y|HTR4_uc003lpj.1_Missense_Mutation_p.H110Y|HTR4_uc003lpk.2_Missense_Mutation_p.H110Y|HTR4_uc011dby.1_Missense_Mutation_p.H110Y|HTR4_uc003lpl.2_Missense_Mutation_p.H110Y|HTR4_uc003lpm.2_Missense_Mutation_p.H110Y|HTR4_uc010jgv.2_RNA|HTR4_uc003lpo.1_Missense_Mutation_p.H110Y	NM_000870	NP_000861	Q13639	5HT4R_HUMAN	serotonin 5-HT4 receptor isoform b	110	Helical; Name=3; (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|positive regulation of cell proliferation	endosome|integral to plasma membrane|membrane fraction	serotonin receptor activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)		Cisapride(DB00604)|Rizatriptan(DB00953)|Tegaserod(DB01079)|Zolmitriptan(DB00315)	CAGCACAGGTGAAAAATCGAT	0.493													4	5					0	0	1	0	0
ABLIM3	22885	broad.mit.edu	37	5	148579948	148579948	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:148579948G>C	uc003lpy.2	+	5	656	c.405G>C	c.(403-405)CAG>CAC	p.Q135H	ABLIM3_uc003lpz.1_Missense_Mutation_p.Q135H|ABLIM3_uc003lqa.1_Missense_Mutation_p.Q143H|ABLIM3_uc003lqb.2_Missense_Mutation_p.Q135H|ABLIM3_uc003lqc.1_Missense_Mutation_p.Q135H|ABLIM3_uc003lqd.1_Missense_Mutation_p.Q135H|ABLIM3_uc003lqf.2_Missense_Mutation_p.Q135H|ABLIM3_uc003lqe.1_Missense_Mutation_p.Q135H	NM_014945	NP_055760	O94929	ABLM3_HUMAN	actin binding LIM protein family, member 3	135	LIM zinc-binding 2.				axon guidance|cytoskeleton organization	cytoplasm	actin binding|zinc ion binding			ovary(2)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGTGCTCCCAGTCCATGGCCA	0.557													17	33					0	0	1	0	0
ABLIM3	22885	broad.mit.edu	37	5	148627398	148627398	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:148627398G>A	uc003lpy.2	+	18	1856	c.1605G>A	c.(1603-1605)TCG>TCA	p.S535S	ABLIM3_uc003lpz.1_Silent_p.S535S|ABLIM3_uc003lqa.1_Silent_p.S432S|ABLIM3_uc003lqb.2_Silent_p.S424S|ABLIM3_uc003lqc.1_Silent_p.S502S|ABLIM3_uc003lqd.1_Silent_p.S440S|ABLIM3_uc003lqf.2_Silent_p.S424S|ABLIM3_uc003lqe.1_Silent_p.S424S	NM_014945	NP_055760	O94929	ABLM3_HUMAN	actin binding LIM protein family, member 3	535					axon guidance|cytoskeleton organization	cytoplasm	actin binding|zinc ion binding			ovary(2)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGGCCCGGTCGAGCTCCTATG	0.557													30	40					0	0	1	0	0
AFAP1L1	134265	broad.mit.edu	37	5	148682047	148682048	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:148682047_148682048CC>TT	uc003lqh.2	+	5	525_526	c.394_395CC>TT	c.(394-396)CCT>TTT	p.P132F	AFAP1L1_uc003lqg.3_Missense_Mutation_p.P132F|AFAP1L1_uc010jgy.2_Missense_Mutation_p.P132F	NM_152406	NP_689619	Q8TED9	AF1L1_HUMAN	actin filament associated protein 1-like 1	132							protein binding			breast(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGAGGCCCTTCCTCTGGGACCC	0.599													6	8					0	0	1	0	0
NMUR2	56923	broad.mit.edu	37	5	151775057	151775057	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:151775057G>A	uc003luv.2	-	3	1066	c.900C>T	c.(898-900)TCC>TCT	p.S300S		NM_020167	NP_064552	Q9GZQ4	NMUR2_HUMAN	neuromedin U receptor 2	300	Extracellular (Potential).				activation of phospholipase A2 activity by calcium-mediated signaling|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|arachidonic acid secretion|calcium ion transport|central nervous system development|elevation of cytosolic calcium ion concentration|regulation of smooth muscle contraction	integral to membrane|plasma membrane	GTP binding|intracellular calcium activated chloride channel activity|neuromedin U receptor activity			ovary(3)|skin(2)|lung(1)|breast(1)|pancreas(1)	8		Medulloblastoma(196;0.091)|all_hematologic(541;0.103)	Kidney(363;0.000106)|KIRC - Kidney renal clear cell carcinoma(527;0.000672)			CAGCAGCCAGGGATTCACTCC	0.473													39	49					0	0	1	0	0
GRIA1	2890	broad.mit.edu	37	5	153181966	153181966	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:153181966C>T	uc003lva.3	+	15	2801	c.2436C>T	c.(2434-2436)ATC>ATT	p.I812I	GRIA1_uc003luy.3_Silent_p.I812I|GRIA1_uc003luz.3_Silent_p.I717I|GRIA1_uc011dcv.1_RNA|GRIA1_uc011dcw.1_Silent_p.I732I|GRIA1_uc011dcx.1_Silent_p.I743I|GRIA1_uc011dcy.1_Silent_p.I822I|GRIA1_uc011dcz.1_Silent_p.I822I	NM_001114183	NP_001107655	P42261	GRIA1_HUMAN	glutamate receptor, ionotropic, AMPA 1 isoform	812	Helical; (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|dendritic spine|endocytic vesicle membrane|endoplasmic reticulum membrane|neuronal cell body|postsynaptic density|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity|PDZ domain binding			ovary(4)|skin(2)	6		Medulloblastoma(196;0.0391)|all_neural(177;0.16)|all_hematologic(541;0.21)	Kidney(363;0.000173)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|L-Glutamic Acid(DB00142)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	TGTTCTACATCCTGATCGGAG	0.418													58	103					0	0	1	0	0
CNOT8	9337	broad.mit.edu	37	5	154254880	154254880	+	Nonsense_Mutation	SNP	A	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:154254880A>T	uc003lvu.2	+	8	1239	c.760A>T	c.(760-762)AAG>TAG	p.K254*	CNOT8_uc011ddf.1_Nonsense_Mutation_p.K148*|CNOT8_uc011ddg.1_Nonsense_Mutation_p.K148*|CNOT8_uc011ddh.1_Nonsense_Mutation_p.K90*|CNOT8_uc003lvv.2_Nonsense_Mutation_p.K254*|CNOT8_uc010jig.2_Nonsense_Mutation_p.K148*|CNOT8_uc010jif.2_Nonsense_Mutation_p.K148*|CNOT8_uc003lvw.2_Nonsense_Mutation_p.K254*|CNOT8_uc011ddi.1_Nonsense_Mutation_p.K148*|CNOT8_uc011ddj.1_Nonsense_Mutation_p.K200*	NM_004779	NP_004770	Q9UFF9	CNOT8_HUMAN	CCR4-NOT transcription complex, subunit 8	254					negative regulation of cell proliferation|nuclear-transcribed mRNA poly(A) tail shortening	cytosol|nucleus	nucleic acid binding|protein binding|sequence-specific DNA binding transcription factor activity				0	Renal(175;0.00488)	Medulloblastoma(196;0.0523)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			TGATGATGCCAAGTACTGTGG	0.468								Direct_reversal_of_damage					19	61					0	0	1	0	0
ADAM19	8728	broad.mit.edu	37	5	156964947	156964947	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:156964947G>A	uc003lwz.2	-	4	368	c.304C>T	c.(304-306)CCT>TCT	p.P102S	ADAM19_uc003lww.1_5'UTR|ADAM19_uc011ddr.1_Missense_Mutation_p.P33S	NM_033274	NP_150377	Q9H013	ADA19_HUMAN	ADAM metallopeptidase domain 19 preproprotein	102					proteolysis	integral to membrane	metalloendopeptidase activity|SH3 domain binding|zinc ion binding			ovary(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	8	Renal(175;0.00488)	Medulloblastoma(196;0.0359)|all_neural(177;0.14)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			GTGGTTTGAGGGTTACCACTT	0.443													44	78					0	0	1	0	0
CCNJL	79616	broad.mit.edu	37	5	159686486	159686486	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:159686486G>A	uc003lyb.1	-	5	969	c.717C>T	c.(715-717)GTC>GTT	p.V239V	CCNJL_uc011dee.1_Silent_p.V191V|CCNJL_uc003lyc.1_RNA|CCNJL_uc011def.1_Silent_p.V191V	NM_024565	NP_078841	Q8IV13	CCNJL_HUMAN	cyclin J-like	239						nucleus					0	Renal(175;0.00196)	Medulloblastoma(196;0.0354)|all_neural(177;0.116)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			CTTGCAGGGTGACCTCTAGGA	0.632													25	49					0	0	1	0	0
GABRB2	2561	broad.mit.edu	37	5	160761908	160761908	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:160761908G>A	uc003lys.1	-	8	901	c.683C>T	c.(682-684)TCC>TTC	p.S228F	GABRB2_uc011deh.1_Missense_Mutation_p.S67F|GABRB2_uc003lyr.1_Missense_Mutation_p.S228F|GABRB2_uc003lyt.1_Missense_Mutation_p.S228F|GABRB2_uc010jiu.1_Missense_Mutation_p.S165F	NM_021911	NP_068711	P47870	GBRB2_HUMAN	gamma-aminobutyric acid (GABA) A receptor, beta	228	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|GABA-A receptor activity				0	Renal(175;0.00259)	Medulloblastoma(196;0.021)|all_neural(177;0.0463)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)		Ethchlorvynol(DB00189)|Flurazepam(DB00690)|Lorazepam(DB00186)|Midazolam(DB00683)	CCTGGGATAGGAACCTAGAAA	0.378													16	34					0	0	1	0	0
ODZ2	57451	broad.mit.edu	37	5	167517616	167517616	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:167517616G>A	uc010jjd.2	+	8	1553	c.1553G>A	c.(1552-1554)TGG>TAG	p.W518*	ODZ2_uc003lzq.2_Nonsense_Mutation_p.W397*|ODZ2_uc003lzr.3_Nonsense_Mutation_p.W286*|uc003lzs.1_Intron	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		AAGGAGAAGTGGAGTGTGGTT	0.532													38	89					0	0	1	0	0
PANK3	79646	broad.mit.edu	37	5	167995997	167995998	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:167995997_167995998GG>AA	uc003lzz.1	-	2	334_335	c.34_35CC>TT	c.(34-36)CCA>TTA	p.P12L		NM_024594	NP_078870	Q9H999	PANK3_HUMAN	pantothenate kinase 3	12					coenzyme A biosynthetic process	cytoplasm|nucleus	ATP binding|pantothenate kinase activity			ovary(1)	1	Renal(175;0.000159)|Lung NSC(126;0.0441)|all_lung(126;0.0909)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0989)|OV - Ovarian serous cystadenocarcinoma(192;0.147)|Epithelial(171;0.188)		GCCAAACCATGGGAAAGCTATG	0.322													22	46					0	0	1	0	0
SLIT3	6586	broad.mit.edu	37	5	168233482	168233482	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:168233482G>A	uc003mab.2	-	9	1324	c.904C>T	c.(904-906)CCT>TCT	p.P302S	SLIT3_uc010jjg.2_Missense_Mutation_p.P302S|SLIT3_uc010jji.2_Missense_Mutation_p.P302S|SLIT3_uc003mac.1_Missense_Mutation_p.P99S	NM_003062	NP_003053	O75094	SLIT3_HUMAN	slit homolog 3 precursor	302	LRRNT 2.				apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			AAGTTGGCAGGAATCTCCATC	0.577													31	49					0	0	1	0	0
KCNIP1	30820	broad.mit.edu	37	5	170145782	170145782	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:170145782G>A	uc003mas.2	+	3	644	c.115G>A	c.(115-117)GAG>AAG	p.E39K	KCNIP1_uc003map.2_Missense_Mutation_p.E37K|KCNIP1_uc003mat.2_Missense_Mutation_p.E28K|KCNIP1_uc010jjp.2_5'UTR|KCNIP1_uc010jjq.2_Missense_Mutation_p.E28K	NM_001034837	NP_001030009	Q9NZI2	KCIP1_HUMAN	Kv channel interacting protein 1 isoform 1	39	EF-hand 1; degenerate.				detection of calcium ion|signal transduction|synaptic transmission	plasma membrane	potassium channel activity|voltage-gated ion channel activity			skin(2)	2	Renal(175;0.000159)|Lung NSC(126;0.0191)|all_lung(126;0.0297)	Medulloblastoma(196;0.0109)|all_neural(177;0.0177)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			AGATGAGCTGGAGATGACCAT	0.512													5	28					0	0	1	0	0
GABRP	2568	broad.mit.edu	37	5	170232732	170232732	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:170232732G>A	uc003mau.2	+	7	752	c.554G>A	c.(553-555)GGA>GAA	p.G185E	GABRP_uc011dev.1_Missense_Mutation_p.G185E	NM_014211	NP_055026	O00591	GBRP_HUMAN	gamma-aminobutyric acid (GABA) A receptor, pi	185	Extracellular (Potential).					cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			breast(1)	1	Renal(175;0.000159)|Lung NSC(126;0.0122)|all_lung(126;0.0193)	Medulloblastoma(196;0.0109)|all_neural(177;0.0298)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			GGCTATGATGGAAATGATGTG	0.502													21	29					0	0	1	0	0
UNC5A	90249	broad.mit.edu	37	5	176305269	176305269	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:176305269C>T	uc003mey.2	+	12	2086	c.1894C>T	c.(1894-1896)CTG>TTG	p.L632L		NM_133369	NP_588610	Q6ZN44	UNC5A_HUMAN	netrin receptor Unc5h1 precursor	632	Cytoplasmic (Potential).				apoptosis|axon guidance|regulation of apoptosis	integral to membrane|plasma membrane				skin(1)	1	all_cancers(89;0.000119)|Renal(175;0.000269)|Lung NSC(126;0.00696)|all_lung(126;0.0115)	Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GGAGAAGCAGCTGGGGGGACA	0.647													17	22					0	0	1	0	0
ZNF454	285676	broad.mit.edu	37	5	178391810	178391810	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:178391810C>T	uc003mjo.1	+	5	676	c.405C>T	c.(403-405)ATC>ATT	p.I135I	ZNF454_uc010jkz.1_Silent_p.I135I	NM_182594	NP_872400	Q8N9F8	ZN454_HUMAN	zinc finger protein 454	135					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|lung(1)	3	all_cancers(89;0.000904)|Renal(175;0.000159)|all_epithelial(37;0.000167)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	all_cancers(40;0.225)|all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.234)		GCCAGGAGATCAGTTTGCAGC	0.483													21	42					0	0	1	0	0
ADAMTS2	9509	broad.mit.edu	37	5	178552138	178552138	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:178552138G>A	uc003mjw.2	-	19	2794	c.2794C>T	c.(2794-2796)CGG>TGG	p.R932W		NM_014244	NP_055059	O95450	ATS2_HUMAN	ADAM metallopeptidase with thrombospondin type 1	932	TSP type-1 3.				collagen catabolic process	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4	all_cancers(89;0.000456)|all_epithelial(37;0.000138)|Renal(175;0.000159)|Lung NSC(126;0.00184)|all_lung(126;0.00326)	all_cancers(40;0.00604)|all_neural(177;0.00411)|Medulloblastoma(196;0.00508)|Lung NSC(249;0.0569)|all_lung(500;0.129)|all_hematologic(541;0.211)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	GBM - Glioblastoma multiforme(465;0.0473)		ATGCCTGTCCGCCCACAGGTC	0.667													66	84					0	0	1	0	0
SQSTM1	8878	broad.mit.edu	37	5	179250931	179250931	+	Missense_Mutation	SNP	T	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:179250931T>A	uc003mkw.3	+	3	470	c.375T>A	c.(373-375)AAT>AAA	p.N125K	SQSTM1_uc011dgr.1_Missense_Mutation_p.N41K|SQSTM1_uc011dgs.1_Missense_Mutation_p.N41K|SQSTM1_uc003mkv.3_Missense_Mutation_p.N125K|SQSTM1_uc003mkx.2_Missense_Mutation_p.N41K	NM_003900	NP_003891	Q13501	SQSTM_HUMAN	sequestosome 1 isoform 1	125	ZZ-type.|Interaction with GABRR3 (By similarity).				anti-apoptosis|apoptosis|cell differentiation|endosome transport|induction of apoptosis by extracellular signals|intracellular signal transduction|macroautophagy|nerve growth factor receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|protein localization|regulation of I-kappaB kinase/NF-kappaB cascade|ubiquitin-dependent protein catabolic process	cytosol|late endosome|nucleoplasm	protein kinase C binding|receptor tyrosine kinase binding|SH2 domain binding|ubiquitin binding|zinc ion binding		SQSTM1/ALK(2)	haematopoietic_and_lymphoid_tissue(2)|ovary(1)	3	all_cancers(89;0.000205)|all_epithelial(37;7.15e-05)|Renal(175;0.000159)|Lung NSC(126;0.00136)|all_lung(126;0.00243)	all_cancers(40;0.0395)|Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			TGCACCCCAATGTGATCTGCG	0.602									Paget_Disease_of_Bone				32	76					0	0	1	0	0
FLT4	2324	broad.mit.edu	37	5	180048602	180048602	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr5:180048602C>T	uc003mma.3	-	13	2039	c.1960G>A	c.(1960-1962)GAA>AAA	p.E654K	FLT4_uc003mlz.3_Missense_Mutation_p.E654K|FLT4_uc003mmb.1_Missense_Mutation_p.E187K|FLT4_uc011dgy.1_Missense_Mutation_p.E654K	NM_002020	NP_002011	P35916	VGFR3_HUMAN	fms-related tyrosine kinase 4 isoform 2	654	Ig-like C2-type 6.|Extracellular (Potential).				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|protein phosphatase binding|vascular endothelial growth factor receptor activity			lung(7)|skin(2)|ovary(2)|stomach(1)|central_nervous_system(1)|breast(1)|kidney(1)	15	all_cancers(89;2.21e-05)|all_epithelial(37;5.29e-06)|Renal(175;0.000159)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.114)	all_cancers(40;0.00245)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)|Ovarian(839;0.238)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.134)	Sorafenib(DB00398)|Sunitinib(DB01268)	TCTTGCACTTCGCACACATAG	0.701									Congenital_Hereditary_Lymphedema				20	22					0	0	1	0	0
SLC22A23	63027	broad.mit.edu	37	6	3298437	3298437	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr6:3298437G>A	uc003mvm.3	-	5	1098	c.1098C>T	c.(1096-1098)TCC>TCT	p.S366S	SLC22A23_uc003mvn.3_Silent_p.S85S|SLC22A23_uc003mvo.3_Silent_p.S85S|SLC22A23_uc003mvp.1_RNA|SLC22A23_uc010jnn.2_Silent_p.S366S	NM_015482	NP_056297	A1A5C7	S22AN_HUMAN	solute carrier family 22, member 23 isoform a	366					ion transport	integral to membrane	transmembrane transporter activity			ovary(1)	1	Ovarian(93;0.0493)	all_hematologic(90;0.0905)				GCCACCGGAGGGACTCGGGGA	0.547													41	125					0	0	1	0	0
C6orf146	222826	broad.mit.edu	37	6	4068974	4068974	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr6:4068974G>A	uc003mvx.2	-	7	1823	c.1483C>T	c.(1483-1485)CTT>TTT	p.L495F	C6orf146_uc010jnq.1_Intron|C6orf146_uc003mvy.2_Missense_Mutation_p.L432F	NM_173563	NP_775834	Q8IXS0	CF146_HUMAN	hypothetical protein LOC222826	495										ovary(1)	1	Ovarian(93;0.0925)	all_hematologic(90;0.108)				TTAGCAATAAGGGAAGGCGAC	0.368													39	42					0	0	1	0	0
C6orf146	222826	broad.mit.edu	37	6	4068976	4068976	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr6:4068976G>A	uc003mvx.2	-	7	1821	c.1481C>T	c.(1480-1482)TCC>TTC	p.S494F	C6orf146_uc010jnq.1_Intron|C6orf146_uc003mvy.2_Missense_Mutation_p.S431F	NM_173563	NP_775834	Q8IXS0	CF146_HUMAN	hypothetical protein LOC222826	494										ovary(1)	1	Ovarian(93;0.0925)	all_hematologic(90;0.108)				AGCAATAAGGGAAGGCGACAA	0.378													39	43					0	0	1	0	0
DSP	1832	broad.mit.edu	37	6	7581377	7581377	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr6:7581377G>A	uc003mxp.1	+	23	5233	c.4954G>A	c.(4954-4956)GAA>AAA	p.E1652K	DSP_uc003mxq.1_Intron	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	1652	Central fibrous rod domain.|Potential.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		GAGGACCCAGGAAGAGCTGAG	0.557													52	94					0	0	1	0	0
SYCP2L	221711	broad.mit.edu	37	6	10913150	10913150	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr6:10913150C>T	uc003mzo.2	+	14	1358	c.1062C>T	c.(1060-1062)TTC>TTT	p.F354F	SYCP2L_uc011din.1_Silent_p.F195F|SYCP2L_uc010jow.2_5'UTR	NM_001040274	NP_001035364	Q5T4T6	SYC2L_HUMAN	synaptonemal complex protein 2-like	354						nucleus				ovary(1)|skin(1)	2	Breast(50;0.0838)|Ovarian(93;0.107)	all_hematologic(90;0.135)	Epithelial(50;0.239)			TGATGAATTTCAGCATAACAG	0.343													8	32					0	0	1	0	0
ALDH5A1	7915	broad.mit.edu	37	6	24533825	24533825	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr6:24533825C>T	uc003neg.2	+	10	1521	c.1493C>T	c.(1492-1494)TCC>TTC	p.S498F	ALDH5A1_uc003nef.2_Missense_Mutation_p.S511F	NM_001080	NP_001071	P51649	SSDH_HUMAN	aldehyde dehydrogenase 5A1 isoform 2 precursor	498		Substrate.		S->A: Reduces catalytic activity to less than 15% of wild-type.	acetate metabolic process|central nervous system development|galactosylceramide metabolic process|gamma-aminobutyric acid catabolic process|glucose metabolic process|glutamate metabolic process|glutamine metabolic process|glutathione metabolic process|glycerophospholipid metabolic process|neurotransmitter catabolic process|neurotransmitter secretion|protein homotetramerization|respiratory electron transport chain|short-chain fatty acid metabolic process|succinate metabolic process	mitochondrial matrix|soluble fraction	succinate-semialdehyde dehydrogenase activity				0					Chlormerodrin(DB00534)|NADH(DB00157)|Succinic acid(DB00139)	GGATTAATTTCCTCTGTGGAG	0.517													99	101					0	0	1	0	0
LRRC16A	55604	broad.mit.edu	37	6	25594645	25594645	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr6:25594645C>T	uc011djw.1	+	32	3385	c.3009C>T	c.(3007-3009)GTC>GTT	p.V1003V	LRRC16A_uc010jpx.2_Silent_p.V1003V|LRRC16A_uc010jpy.2_Silent_p.V1003V	NM_017640	NP_060110	Q5VZK9	LR16A_HUMAN	leucine rich repeat containing 16A	1003	Inhibits capping activity of CAPZA2 (By similarity).				actin filament organization|blood coagulation|cell migration|lamellipodium assembly|ruffle organization|urate metabolic process	cytosol|lamellipodium|nucleus				ovary(1)|breast(1)|central_nervous_system(1)|pancreas(1)	4						TTTTGCAGGTCTGTGCTGCCA	0.393													20	49					0	0	1	0	0
SLC17A4	10050	broad.mit.edu	37	6	25770459	25770459	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr6:25770459C>T	uc003nfe.2	+	4	581	c.462C>T	c.(460-462)TTC>TTT	p.F154F	SLC17A4_uc011djx.1_Intron|SLC17A4_uc003nff.1_Intron|SLC17A4_uc003nfg.2_Silent_p.F91F	NM_005495	NP_005486	Q9Y2C5	S17A4_HUMAN	solute carrier family 17 (sodium phosphate),	154	Helical; (Potential).				phosphate metabolic process	integral to plasma membrane|membrane fraction	sodium:phosphate symporter activity			skin(1)	1						TGACCCTCTTCATTCCACTGG	0.493													53	97					0	0	1	0	0
SLC17A4	10050	broad.mit.edu	37	6	25773755	25773755	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr6:25773755C>T	uc003nfe.2	+	8	959	c.840C>T	c.(838-840)GGC>GGT	p.G280G	SLC17A4_uc011djx.1_Intron|SLC17A4_uc003nff.1_Silent_p.G41G|SLC17A4_uc003nfg.2_Silent_p.G217G|SLC17A4_uc010jqa.2_5'UTR	NM_005495	NP_005486	Q9Y2C5	S17A4_HUMAN	solute carrier family 17 (sodium phosphate),	280					phosphate metabolic process	integral to plasma membrane|membrane fraction	sodium:phosphate symporter activity			skin(1)	1						GTTCACCAGGCTGGTCTCTTC	0.458													23	47					0	0	1	0	0
HFE	3077	broad.mit.edu	37	6	26087697	26087697	+	Missense_Mutation	SNP	T	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr6:26087697T>A	uc003nfx.1	+	1	189	c.29T>A	c.(28-30)CTC>CAC	p.L10H	HFE_uc003nfy.1_Missense_Mutation_p.L10H|HFE_uc010jqe.1_Missense_Mutation_p.L10H|HFE_uc003nfz.1_Missense_Mutation_p.L10H|HFE_uc003ngd.1_Missense_Mutation_p.L10H|HFE_uc003nga.1_Missense_Mutation_p.L10H|HFE_uc003ngb.1_Missense_Mutation_p.L10H|HFE_uc003ngc.1_Missense_Mutation_p.L10H|HFE_uc003nge.1_Missense_Mutation_p.L10H|HFE_uc003ngf.1_Missense_Mutation_p.L10H	NM_000410	NP_000401	Q30201	HFE_HUMAN	hemochromatosis protein isoform 1 precursor	10					antigen processing and presentation of peptide antigen via MHC class I|cellular iron ion homeostasis|immune response|iron ion transport|protein complex assembly|receptor-mediated endocytosis	apical part of cell|basal part of cell|cytoplasmic vesicle|early endosome|integral to plasma membrane|MHC class I protein complex|perinuclear region of cytoplasm|recycling endosome	protein binding				0						CCGGCGCTTCTCCTCCTGATG	0.677									Hemochromatosis				34	96					0	0	1	0	0
BTN3A3	10384	broad.mit.edu	37	6	26452276	26452276	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr6:26452276C>T	uc003nhz.2	+	11	1572	c.1392C>T	c.(1390-1392)TTC>TTT	p.F464F	BTN3A3_uc003nia.2_Silent_p.F422F|BTN3A3_uc011dkn.1_Silent_p.F415F	NM_006994	NP_008925	O00478	BT3A3_HUMAN	butyrophilin, subfamily 3, member A3 isoform a	464	B30.2/SPRY.|Cytoplasmic (Potential).					integral to membrane					0						TGGGGATCTTCCTGGACTATG	0.498													45	105					0	0	1	0	0
GPX6	257202	broad.mit.edu	37	6	28483437	28483437	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr6:28483437C>T	uc011dlj.1	-	1	134	c.84G>A	c.(82-84)AGG>AGA	p.R28R	GPX6_uc010jrg.1_RNA	NM_182701	NP_874360	P59796	GPX6_HUMAN	glutathione peroxidase 6 precursor	28					response to oxidative stress	extracellular region	glutathione peroxidase activity			ovary(3)|pancreas(1)|skin(1)	5					Glutathione(DB00143)	TGCTCACCTTCCTATTTTGAG	0.532													16	42					0	0	1	0	0
SCAND3	114821	broad.mit.edu	37	6	28540642	28540642	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr6:28540642C>T	uc003nlo.2	-	4	3642	c.3024G>A	c.(3022-3024)ATG>ATA	p.M1008I		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	1008					DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						atatttttttcatggcaagac	0													34	44					0	0	1	0	0
SCAND3	114821	broad.mit.edu	37	6	28542686	28542686	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr6:28542686C>T	uc003nlo.2	-	3	2414	c.1796G>A	c.(1795-1797)AGA>AAA	p.R599K		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	599					DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						GGATAAAAATCTTAGTCTGCT	0.388													9	28					0	0	1	0	0
OR2B3	442184	broad.mit.edu	37	6	29054843	29054843	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr6:29054843G>A	uc003nlx.2	-	1	248	c.183C>T	c.(181-183)TTC>TTT	p.F61F		NM_001005226	NP_001005226			olfactory receptor, family 2, subfamily B,											skin(1)	1						TAGTGAGAAAGAAATACATGG	0.388													28	69					0	0	1	0	0
OR2J2	26707	broad.mit.edu	37	6	29142132	29142132	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr6:29142132G>A	uc011dlm.1	+	1	822	c.720G>A	c.(718-720)AGG>AGA	p.R240R		NM_030905	NP_112167	O76002	OR2J2_HUMAN	olfactory receptor, family 2, subfamily J,	240	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						AAGTGTTTAGGACATGTGGAG	0.458													49	100					0	0	1	0	0
MAS1L	116511	broad.mit.edu	37	6	29454813	29454813	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr6:29454813G>A	uc011dlq.1	-	1	867	c.867C>T	c.(865-867)TTC>TTT	p.F289F		NM_052967	NP_443199	P35410	MAS1L_HUMAN	MAS1 oncogene-like	289	Extracellular (Potential).					cytoplasm|integral to membrane|nucleus|plasma membrane	G-protein coupled receptor activity			ovary(7)|lung(2)	9						CAAACATTTTGAAATCTGTTA	0.493													16	40					0	0	1	0	0
OR2H2	7932	broad.mit.edu	37	6	29556432	29556432	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr6:29556432G>A	uc003nmr.1	+	1	750	c.711G>A	c.(709-711)GGG>GGA	p.G237G	GABBR1_uc003nmp.3_Intron	NM_007160	NP_009091	O95918	OR2H2_HUMAN	olfactory receptor, family 2, subfamily H,	237	Helical; Name=6; (Potential).				defense response|mating|sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						AAGCTTTTGGGACCTGCTCCT	0.532													46	45					0	0	1	0	0
VARS2	57176	broad.mit.edu	37	6	30890280	30890280	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr6:30890280C>T	uc003nsc.1	+	20	2618	c.1986C>T	c.(1984-1986)TCC>TCT	p.S662S	VARS2_uc011dmx.1_Silent_p.S662S|VARS2_uc011dmy.1_Silent_p.S522S|VARS2_uc011dmz.1_Silent_p.S692S|VARS2_uc011dna.1_Silent_p.S660S|VARS2_uc011dnb.1_RNA|VARS2_uc011dnc.1_RNA|VARS2_uc011dnd.1_Silent_p.S100S|VARS2_uc010jsg.1_Silent_p.S34S|VARS2_uc010jsh.1_5'Flank	NM_020442	NP_065175	Q5ST30	SYVM_HUMAN	valyl-tRNA synthetase 2, mitochondrial	662	KMSKS region.				valyl-tRNA aminoacylation	mitochondrion	ATP binding|valine-tRNA ligase activity			ovary(3)|central_nervous_system(1)	4						TGAGCAAGTCCCTGGGGAATG	0.602													38	130					0	0	1	0	0
DPCR1	135656	broad.mit.edu	37	6	30920811	30920811	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr6:30920811G>A	uc003nsg.2	+	3	4099	c.4099G>A	c.(4099-4101)GAT>AAT	p.D1367N		NM_080870	NP_543146	Q3MIW9	DPCR1_HUMAN	diffuse panbronchiolitis critical region 1	491	Cytoplasmic (Potential).					integral to membrane					0						TGATGCAGAGGATGAGGGTGG	0.552													27	31					0	0	1	0	0
HCG27	253018	broad.mit.edu	37	6	31170442	31170442	+	RNA	SNP	G	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr6:31170442G>T	uc011dni.1	+	2		c.417G>T				NR_026791				Homo sapiens cDNA FLJ40123 fis, clone TESTI2010280.												0						CAGGGTTGAGGTTGGGGGCAT	0.612													19	48					6.94344e-10	7.01354e-10	1	1	0
BAT3	7917	broad.mit.edu	37	6	31608042	31608042	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr6:31608042C>T	uc003nvg.3	-	23	3404	c.3090G>A	c.(3088-3090)CGG>CGA	p.R1030R	BAT3_uc003nvf.3_Silent_p.R1024R|BAT3_uc003nvh.3_Silent_p.R1024R|BAT3_uc003nvi.3_Silent_p.R1024R|BAT3_uc011dnw.1_Silent_p.R1024R|BAT3_uc011dnx.1_Silent_p.R850R	NM_004639	NP_004630	P46379	BAG6_HUMAN	HLA-B associated transcript-3 isoform a	1030					apoptosis in response to endoplasmic reticulum stress|brain development|cell differentiation|chromatin modification|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|embryo development|internal peptidyl-lysine acetylation|kidney development|lung development|negative regulation of proteasomal ubiquitin-dependent protein catabolic process|protein stabilization|spermatogenesis|synaptonemal complex assembly|tail-anchored membrane protein insertion into ER membrane|transport|ubiquitin-dependent protein catabolic process	BAT3 complex|nucleus	polyubiquitin binding|proteasome binding|ribosome binding				0						GTTTCACCTTCCGCTGGCTCT	0.522													215	302					0	0	1	0	0
TNXB	7148	broad.mit.edu	37	6	32038093	32038093	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr6:32038093G>A	uc003nzl.2	-	14	5291	c.5089C>T	c.(5089-5091)CCT>TCT	p.P1697S		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	1779	Fibronectin type-III 10.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						TGGCCCTCAGGAACCGTCCAG	0.662													124	135					0	0	1	0	0
TNXB	7148	broad.mit.edu	37	6	32065818	32065818	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr6:32065818C>T	uc003nzl.2	-	2	360	c.158G>A	c.(157-159)GGA>GAA	p.G53E	TNXB_uc010jts.1_Missense_Mutation_p.G52E|ATF6B_uc003nzm.1_3'UTR	NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	53					actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						AGAGGGGCTTCCCACTCCAGC	0.642													192	232					0	0	1	0	0
NOTCH4	4855	broad.mit.edu	37	6	32170166	32170166	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr6:32170166C>T	uc003obb.2	-	21	3581	c.3442G>A	c.(3442-3444)GAG>AAG	p.E1148K	NOTCH4_uc003oba.2_5'UTR|NOTCH4_uc011dpu.1_Intron|NOTCH4_uc011dpv.1_Intron	NM_004557	NP_004548	Q99466	NOTC4_HUMAN	notch4 preproprotein	1148	Extracellular (Potential).|EGF-like 29.				cell fate determination|embryo development|hemopoiesis|mammary gland development|negative regulation of endothelial cell differentiation|Notch receptor processing|Notch signaling pathway|patterning of blood vessels|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|protein heterodimerization activity|receptor activity			lung(8)|ovary(5)|breast(4)|central_nervous_system(3)|upper_aerodigestive_tract(1)|skin(1)	22						CCCGTGGTCTCTGAGCAGCTG	0.652													116	282					0	0	1	0	0
HLA-DQA1	3117	broad.mit.edu	37	6	32609902	32609902	+	Missense_Mutation	SNP	G	A	A	rs41544114		TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr6:32609902G>A	uc003obr.2	+	3	538	c.485G>A	c.(484-486)AGC>AAC	p.S162N	HLA-DQA1_uc003obs.2_RNA|HLA-DQA1_uc003obt.1_Missense_Mutation_p.S162N|HLA-DQA1_uc003obu.2_5'Flank	NM_002122	NP_002113	P01909	DQA1_HUMAN	major histocompatibility complex, class II, DQ	161	Ig-like C1-type.|Alpha-2.|Extracellular (Potential).		S -> R (in allele DQA1*06:02).|S -> I (in allele DQA1*05:08).		antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|interferon-gamma-mediated signaling pathway|T cell costimulation|T cell receptor signaling pathway	endoplasmic reticulum membrane|endosome membrane|Golgi apparatus|integral to plasma membrane|lysosomal membrane|MHC class II protein complex	MHC class II receptor activity				0						TCTGAGACCAGCTTCCTCTCC	0.488													11	24					0	0	1	0	0
HLA-DQA2	3118	broad.mit.edu	37	6	32713721	32713721	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr6:32713721G>A	uc003obx.2	+	3	543	c.485G>A	c.(484-486)AGC>AAC	p.S162N		NM_020056	NP_064440	P01906	DQA2_HUMAN	major histocompatibility complex, class II, DQ	162	Alpha-2.|Extracellular (Potential).|Ig-like C1-type.				antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|interferon-gamma-mediated signaling pathway|T cell costimulation|T cell receptor signaling pathway	endoplasmic reticulum membrane|endosome membrane|Golgi apparatus|integral to plasma membrane|lysosomal membrane|MHC class II protein complex	MHC class II receptor activity				0					Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	TCTGAGACCAGCTTCCTCTCC	0.498													23	232					0	0	1	0	0
TAP2	6891	broad.mit.edu	37	6	32800149	32800149	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr6:32800149G>A	uc003occ.2	-	6	1264	c.1233C>T	c.(1231-1233)TCC>TCT	p.S411S	TAP2_uc011dqf.1_Silent_p.S411S|TAP2_uc003ocb.1_Silent_p.S411S|TAP2_uc003ocd.2_Silent_p.S411S	NM_018833	NP_061313	Q03519	TAP2_HUMAN	transporter 2, ATP-binding cassette, sub-family	411	Helical; Name=9; (Potential).|ABC transmembrane type-1.				antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-dependent|antigen processing and presentation of endogenous peptide antigen via MHC class Ib via ER pathway, TAP-dependent|antigen processing and presentation of exogenous protein antigen via MHC class Ib, TAP-dependent|cytosol to ER transport|intracellular transport of viral proteins in host cell|peptide antigen transport|positive regulation of antigen processing and presentation of peptide antigen via MHC class I|positive regulation of T cell mediated cytotoxicity	nucleus|plasma membrane|TAP complex	ATP binding|MHC class I protein binding|oligopeptide-transporting ATPase activity|peptide antigen binding|peptide antigen-transporting ATPase activity|TAP1 binding|TAP2 binding|tapasin binding				0						AGATCATAAAGGAAAGCAGGC	0.567													15	50					0	0	1	0	0
HLA-DMB	3109	broad.mit.edu	37	6	32905011	32905011	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr6:32905011C>T	uc003ocl.1	-	3	793	c.560G>A	c.(559-561)GGG>GAG	p.G187E	HLA-DMB_uc003ocj.1_3'UTR|HLA-DMB_uc003ock.1_5'Flank|HLA-DMB_uc010jud.1_Missense_Mutation_p.G56E|HLA-DMB_uc010jue.1_Missense_Mutation_p.G56E|HLA-DMB_uc010juf.1_Missense_Mutation_p.G56E|HLA-DMB_uc011dql.1_Missense_Mutation_p.G187E	NM_002118	NP_002109	P28068	DMB_HUMAN	major histocompatibility complex, class II, DM	187	Lumenal (Potential).|Ig-like C1-type.|Beta-2.				antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|interferon-gamma-mediated signaling pathway|T cell costimulation|T cell receptor signaling pathway	integral to membrane|late endosome membrane|lysosomal membrane|MHC class II protein complex					0						GTAAGTGTCCCCGTAAGAGGG	0.547													56	54					0	0	1	0	0
COL11A2	1302	broad.mit.edu	37	6	33157238	33157238	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr6:33157238G>A	uc003ocx.1	-	2	319	c.91C>T	c.(91-93)CCT>TCT	p.P31S	COL11A2_uc003ocy.1_Missense_Mutation_p.P31S|COL11A2_uc003ocz.1_Missense_Mutation_p.P31S|COL11A2_uc003oda.2_Missense_Mutation_p.P31S	NM_080680	NP_542411	P13942	COBA2_HUMAN	collagen, type XI, alpha 2 isoform 1	31	TSP N-terminal.				cartilage development|cell adhesion|collagen fibril organization|sensory perception of sound|soft palate development	collagen type XI	extracellular matrix structural constituent conferring tensile strength|protein binding, bridging			ovary(3)|skin(2)	5						ACATCCACAGGGGGTGCACCT	0.587													19	24					0	0	1	0	0
WDR46	9277	broad.mit.edu	37	6	33247113	33247113	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr6:33247113C>T	uc003ods.2	-	15	1817	c.1773G>A	c.(1771-1773)AAG>AAA	p.K591K	WDR46_uc011dra.1_Silent_p.K537K	NM_005452	NP_005443	O15213	WDR46_HUMAN	WD repeat domain 46 isoform 1	591											0						CCTTCGCCTCCTTATGATGCT	0.637													46	159					0	0	1	0	0
FKBP5	2289	broad.mit.edu	37	6	35547918	35547918	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr6:35547918C>T	uc011dte.1	-	9	1124	c.921G>A	c.(919-921)AAG>AAA	p.K307K	FKBP5_uc003okx.2_Silent_p.K307K|FKBP5_uc011dtf.1_Silent_p.K128K|FKBP5_uc003oky.2_Silent_p.K307K	NM_001145776	NP_001139248	Q13451	FKBP5_HUMAN	FK506 binding protein 5 isoform 1	307					protein folding	cytoplasm|membrane|nucleus	FK506 binding|heat shock protein binding|peptidyl-prolyl cis-trans isomerase activity			ovary(1)	1						CTTTCGATTCCTTTTCTGATA	0.433													42	124					0	0	1	0	0
C6orf81	221481	broad.mit.edu	37	6	35716365	35716365	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr6:35716365C>T	uc003ola.2	+	6	849	c.822C>T	c.(820-822)CTC>CTT	p.L274L	C6orf81_uc003olb.1_Silent_p.L237L	NM_145028	NP_659465	Q5T9G4	CF081_HUMAN	hypothetical protein LOC221481	247							binding			ovary(1)	1						CAGGGAGTCTCCTGTATGAGG	0.512													41	50					0	0	1	0	0
PNPLA1	285848	broad.mit.edu	37	6	36262016	36262016	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr6:36262016C>T	uc010jwf.2	+	4	554	c.554C>T	c.(553-555)ACC>ATC	p.T185I	PNPLA1_uc003olw.1_Missense_Mutation_p.T90I|PNPLA1_uc010jwe.1_Missense_Mutation_p.T99I	NM_001145717	NP_001139189	Q8N8W4	PLPL1_HUMAN	patatin-like phospholipase domain containing 1	185	Patatin.				lipid catabolic process		hydrolase activity			large_intestine(1)|pancreas(1)|breast(1)|skin(1)	4						GCCTTCTGGACCGACGCCATC	0.617													19	31					0	0	1	0	0
C6orf222	389384	broad.mit.edu	37	6	36293091	36293091	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr6:36293091C>T	uc003oly.2	-	6	1315	c.1137G>A	c.(1135-1137)GAG>GAA	p.E379E		NM_001010903	NP_001010903	P0C671	CF222_HUMAN	hypothetical protein LOC389384	379										skin(2)|ovary(1)|breast(1)	4						GCGGAAGCTCCTCTCCAGGTT	0.468													28	59					0	0	1	0	0
DAAM2	23500	broad.mit.edu	37	6	39851747	39851747	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr6:39851747C>T	uc003oow.2	+	15	2011	c.1855C>T	c.(1855-1857)CCT>TCT	p.P619S	DAAM2_uc003oox.2_Missense_Mutation_p.P619S|uc003ooz.1_RNA	NM_015345	NP_056160	Q86T65	DAAM2_HUMAN	dishevelled associated activator of	619	FH2.				actin cytoskeleton organization		actin binding|Rho GTPase binding			ovary(2)|skin(1)	3	Ovarian(28;0.0355)|Colorectal(47;0.196)					GGAGCGTGTCCCTGGCACCGT	0.498													12	30					0	0	1	0	0
CUL7	9820	broad.mit.edu	37	6	43019204	43019204	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr6:43019204G>A	uc003otq.2	-	4	1038	c.735C>T	c.(733-735)GTC>GTT	p.V245V	CUL7_uc011dvb.1_Silent_p.V329V|CUL7_uc010jyh.2_Intron|KLC4_uc003otr.1_Intron	NM_014780	NP_055595	Q14999	CUL7_HUMAN	cullin 7	245					interspecies interaction between organisms|ubiquitin-dependent protein catabolic process|vasculogenesis	anaphase-promoting complex|mitochondrion	ubiquitin protein ligase binding			ovary(3)|kidney(1)	4			all cancers(41;0.00231)|Colorectal(64;0.00237)|COAD - Colon adenocarcinoma(64;0.00473)|OV - Ovarian serous cystadenocarcinoma(102;0.0442)|KIRC - Kidney renal clear cell carcinoma(15;0.133)|Kidney(15;0.188)			CCCTTCCTGGGACCTGTGGGA	0.557													52	52					0	0	1	0	0
MEP1A	4224	broad.mit.edu	37	6	46787274	46787274	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr6:46787274C>T	uc010jzh.1	+	7	431	c.389C>T	c.(388-390)TCT>TTT	p.S130F	MEP1A_uc011dwg.1_5'UTR|MEP1A_uc011dwh.1_Missense_Mutation_p.S158F|MEP1A_uc011dwi.1_Missense_Mutation_p.S30F	NM_005588	NP_005579	Q16819	MEP1A_HUMAN	meprin A alpha precursor	130	Extracellular (Potential).|Metalloprotease.				digestion|proteolysis	extracellular space|integral to plasma membrane|soluble fraction	metalloendopeptidase activity|zinc ion binding			pancreas(2)|ovary(1)	3			Lung(136;0.192)			AGGTGCTGGTCTGAGGTTGGT	0.413													40	39					0	0	1	0	0
GPR110	266977	broad.mit.edu	37	6	46977397	46977397	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr6:46977397C>T	uc003oyt.2	-	11	1973	c.1774G>A	c.(1774-1776)GGA>AGA	p.G592R	GPR110_uc011dwl.1_Missense_Mutation_p.G280R	NM_153840	NP_722582	Q5T601	GP110_HUMAN	G-protein coupled receptor 110 isoform 1	592	Helical; Name=1; (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(2)|pancreas(1)	3						ATACCCAGTCCCACATAGGTG	0.443													17	59					0	0	1	0	0
PKHD1	5314	broad.mit.edu	37	6	51910841	51910841	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr6:51910841G>A	uc003pah.1	-	24	2829	c.2553C>T	c.(2551-2553)TCC>TCT	p.S851S	PKHD1_uc003pai.2_Silent_p.S851S	NM_138694	NP_619639	P08F94	PKHD1_HUMAN	fibrocystin isoform 1	851	Extracellular (Potential).				cell-cell adhesion|cilium assembly|homeostatic process|kidney development|negative regulation of cellular component movement	anchored to external side of plasma membrane|apical plasma membrane|integral to membrane|microtubule basal body	protein binding|receptor activity			lung(15)|ovary(15)|large_intestine(5)|central_nervous_system(3)|skin(3)|breast(2)|upper_aerodigestive_tract(1)	44	Lung NSC(77;0.0605)					GAGTGGACCAGGACAAGGTCC	0.453													19	34					0	0	1	0	0
C6orf142	90523	broad.mit.edu	37	6	54095636	54095637	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr6:54095636_54095637CC>TT	uc003pcg.3	+	11	1351_1352	c.1238_1239CC>TT	c.(1237-1239)CCC>CTT	p.P413L	C6orf142_uc003pch.3_Intron|C6orf142_uc011dxa.1_Missense_Mutation_p.P948L	NM_138569	NP_612636	Q5VWP3	MLIP_HUMAN	hypothetical protein LOC90523	413						nuclear envelope|PML body	protein binding				0	Lung NSC(77;0.0317)					GCCCCAGGACCCTTCAGTCATC	0.5													57	179					0	0	1	0	0
TINAG	27283	broad.mit.edu	37	6	54173468	54173468	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr6:54173468C>T	uc003pcj.2	+	1	266	c.120C>T	c.(118-120)ACC>ACT	p.T40T	TINAG_uc003pci.2_Silent_p.T40T|TINAG_uc010jzt.2_RNA	NM_014464	NP_055279	Q9UJW2	TINAG_HUMAN	tubulointerstitial nephritis antigen	40					cell adhesion|immune response|Malpighian tubule morphogenesis|proteolysis	basement membrane	cysteine-type endopeptidase activity|nucleotide binding|polysaccharide binding|scavenger receptor activity			ovary(3)|central_nervous_system(1)	4	Lung NSC(77;0.0518)		LUSC - Lung squamous cell carcinoma(124;0.246)			GGAATCACACCGTTTTGCAAG	0.398													70	82					0	0	1	0	0
FAM83B	222584	broad.mit.edu	37	6	54805802	54805802	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr6:54805802G>A	uc003pck.2	+	5	2149	c.2033G>A	c.(2032-2034)GGA>GAA	p.G678E		NM_001010872	NP_001010872	Q5T0W9	FA83B_HUMAN	hypothetical protein LOC222584	678										ovary(6)	6	Lung NSC(77;0.0178)|Renal(3;0.122)					TTAGATCCTGGAAATAGTAAG	0.358													38	52					0	0	1	0	0
BMP5	653	broad.mit.edu	37	6	55684473	55684473	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr6:55684473G>A	uc003pcq.2	-	2	1375	c.663C>T	c.(661-663)ATC>ATT	p.I221I	BMP5_uc011dxf.1_Silent_p.I221I	NM_021073	NP_066551	P22003	BMP5_HUMAN	bone morphogenetic protein 5 preproprotein	221					cartilage development|cell differentiation|growth|ossification	extracellular space	BMP receptor binding|cytokine activity|growth factor activity			ovary(2)	2	Lung NSC(77;0.0462)		LUSC - Lung squamous cell carcinoma(124;0.181)			ATTCCTTGATGATTTGATATA	0.328													16	39					0	0	1	0	0
COL21A1	81578	broad.mit.edu	37	6	55925593	55925593	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr6:55925593C>T	uc003pcs.2	-	27	2585	c.2353G>A	c.(2353-2355)GGA>AGA	p.G785R	COL21A1_uc010jzz.2_Missense_Mutation_p.G170R|COL21A1_uc011dxg.1_Missense_Mutation_p.G158R|COL21A1_uc011dxh.1_Missense_Mutation_p.G170R|COL21A1_uc003pcr.2_Missense_Mutation_p.G142R	NM_030820	NP_110447	Q96P44	COLA1_HUMAN	collagen, type XXI, alpha 1 precursor	785	Collagen-like 5.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(2)	2	Lung NSC(77;0.0483)		LUSC - Lung squamous cell carcinoma(124;0.181)			AACTCTCTTCCCTGCATCAAA	0.318													33	44					0	0	1	0	0
COL21A1	81578	broad.mit.edu	37	6	55932118	55932118	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr6:55932118C>T	uc003pcs.2	-	23	2334	c.2102G>A	c.(2101-2103)GGA>GAA	p.G701E	COL21A1_uc010jzz.2_Missense_Mutation_p.G86E|COL21A1_uc011dxg.1_Intron|COL21A1_uc011dxh.1_Missense_Mutation_p.G86E|COL21A1_uc003pcr.2_Missense_Mutation_p.E59K	NM_030820	NP_110447	Q96P44	COLA1_HUMAN	collagen, type XXI, alpha 1 precursor	701	Collagen-like 4.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(2)	2	Lung NSC(77;0.0483)		LUSC - Lung squamous cell carcinoma(124;0.181)			ACCTTGATTTCCTTTGTCCCC	0.299													16	31					0	0	1	0	0
DST	667	broad.mit.edu	37	6	56496083	56496083	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr6:56496083G>A	uc003pdf.2	-	29	3997	c.3969C>T	c.(3967-3969)ACC>ACT	p.T1323T	DST_uc003pcz.3_Silent_p.T1145T|DST_uc011dxj.1_Silent_p.T1174T|DST_uc011dxk.1_Silent_p.T1185T|DST_uc003pcy.3_Silent_p.T819T|DST_uc003pdb.2_Silent_p.T819T|DST_uc003pdc.3_Silent_p.T819T|DST_uc003pdd.3_Silent_p.T819T	NM_001144769	NP_001138241	Q03001	DYST_HUMAN	dystonin isoform 2	1145					cell adhesion|cell cycle arrest|cell motility|hemidesmosome assembly|integrin-mediated signaling pathway|intermediate filament cytoskeleton organization|maintenance of cell polarity|microtubule cytoskeleton organization|response to wounding	actin cytoskeleton|axon|axon part|basement membrane|cell cortex|cell leading edge|cytoplasmic membrane-bounded vesicle|endoplasmic reticulum membrane|hemidesmosome|hemidesmosome|integral to membrane|intermediate filament|intermediate filament cytoskeleton|microtubule cytoskeleton|microtubule plus end|nuclear envelope|sarcomere|Z disc	actin binding|calcium ion binding|integrin binding|microtubule plus-end binding|protein binding|protein C-terminus binding|protein homodimerization activity			ovary(7)|central_nervous_system(6)|upper_aerodigestive_tract(1)	14	Lung NSC(77;0.103)		LUSC - Lung squamous cell carcinoma(124;0.0485)|Lung(124;0.0956)			CTGATCGTAGGGTAGGGACTG	0.383													24	20					0	0	1	0	0
LGSN	51557	broad.mit.edu	37	6	63990057	63990057	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr6:63990057C>T	uc003peh.2	-	4	1433	c.1399G>A	c.(1399-1401)GAA>AAA	p.E467K	LGSN_uc003pei.2_3'UTR	NM_016571	NP_057655	Q5TDP6	LGSN_HUMAN	lengsin, lens protein with glutamine synthetase	467					glutamine biosynthetic process		glutamate-ammonia ligase activity			skin(2)	2					L-Glutamic Acid(DB00142)	TGATCTTCTTCCAGTGCCACA	0.428													37	59					0	0	1	0	0
MCART3P	442229	broad.mit.edu	37	6	66498998	66498998	+	RNA	SNP	C	T	T	rs145167793	by1000genomes	TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr6:66498998C>T	uc011dxw.1	+	1		c.1227C>T				NR_026540				Homo sapiens mitochondrial carrier triple repeat 3 pseudogene, mRNA (cDNA clone IMAGE:4821649).												0						TTGTTTTTTTCCAATTAATGT	0.423													13	21					0	0	1	0	0
COL9A1	1297	broad.mit.edu	37	6	70961858	70961858	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr6:70961858C>T	uc003pfg.3	-	28	1996	c.1837G>A	c.(1837-1839)GGA>AGA	p.G613R	COL9A1_uc003pfe.3_Missense_Mutation_p.G186R|COL9A1_uc003pff.3_Missense_Mutation_p.G370R	NM_001851	NP_001842	P20849	CO9A1_HUMAN	alpha 1 type IX collagen isoform 1 precursor	613	Triple-helical region (COL2).				axon guidance|cell adhesion|organ morphogenesis	collagen type IX	metal ion binding			ovary(4)	4						CCCACCTCTCCTGGAGGCCCC	0.488													111	133					0	0	1	0	0
KHDC1	80759	broad.mit.edu	37	6	74001760	74001760	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr6:74001760C>T	uc003pgo.2	-	2	668	c.167G>A	c.(166-168)AGA>AAA	p.R56K	C6orf147_uc011dym.1_RNA	NM_030568	NP_085045	Q4VXA5	KHDC1_HUMAN	KH homology domain containing 1	56						integral to membrane	RNA binding			skin(1)	1						CCTTGAGTTTCTCTCTGTAAA	0.418													16	51					0	0	1	0	0
C6orf221	154288	broad.mit.edu	37	6	74073455	74073455	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr6:74073455G>A	uc003pgt.3	+	3	579	c.526G>A	c.(526-528)GAG>AAG	p.E176K		NM_001017361	NP_001017361	Q587J8	ECAT1_HUMAN	hypothetical protein LOC154288	176										skin(2)	2						GGAGGTGCAGGAGGCCGGGAC	0.692													63	23					0	0	1	0	0
SYNCRIP	10492	broad.mit.edu	37	6	86333812	86333812	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr6:86333812G>A	uc003pla.2	-	7	1226	c.685C>T	c.(685-687)CGT>TGT	p.R229C	SYNCRIP_uc003pku.2_Missense_Mutation_p.R229C|SYNCRIP_uc003pkw.2_Missense_Mutation_p.R229C|SYNCRIP_uc003pky.2_Missense_Mutation_p.R131C|SYNCRIP_uc003pkv.2_Missense_Mutation_p.R229C|SYNCRIP_uc003pkx.2_Missense_Mutation_p.R77C|SYNCRIP_uc003pkz.2_Missense_Mutation_p.R229C	NM_006372	NP_006363	O60506	HNRPQ_HUMAN	synaptotagmin binding, cytoplasmic RNA	229	RRM 1.				CRD-mediated mRNA stabilization|interspecies interaction between organisms	catalytic step 2 spliceosome|CRD-mediated mRNA stability complex|endoplasmic reticulum|histone pre-mRNA 3'end processing complex|microsome|nucleoplasm	nucleotide binding|protein binding			ovary(2)	2		all_cancers(76;0.000137)|Acute lymphoblastic leukemia(125;3.66e-08)|Prostate(29;8.2e-07)|all_hematologic(105;8.61e-05)|all_epithelial(107;0.0297)		BRCA - Breast invasive adenocarcinoma(108;0.0389)		TTTCCAGAACGAATTTCATGA	0.328													20	18					0	0	1	0	0
LYRM2	57226	broad.mit.edu	37	6	90348475	90348475	+	Splice_Site	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr6:90348475G>A	uc003pnm.2	-	1	1	c.-38_splice	c.e1-1		LYRM2_uc010kce.1_5'Flank|LYRM2_uc003png.2_Splice_Site|LYRM2_uc010kcf.1_5'Flank|LYRM2_uc010kcg.2_5'Flank|LYRM2_uc003pnl.3_5'Flank	NM_020466	NP_065199	Q9NU23	LYRM2_HUMAN	LYR motif containing 2												0		all_cancers(76;2.76e-09)|Prostate(29;1.16e-10)|Acute lymphoblastic leukemia(125;1.45e-10)|all_hematologic(105;7.74e-07)|all_epithelial(107;3.72e-05)|Lung NSC(302;0.238)		BRCA - Breast invasive adenocarcinoma(108;0.0131)		GCGCAGGAGCGGAAGTGGGGT	0.667													31	23					0	0	1	0	0
GPR63	81491	broad.mit.edu	37	6	97246510	97246510	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr6:97246510C>T	uc010kcl.2	-	3	1576	c.1098G>A	c.(1096-1098)TTG>TTA	p.L366L	GPR63_uc003pou.2_Silent_p.L366L	NM_001143957	NP_001137429	Q9BZJ6	GPR63_HUMAN	G protein-coupled receptor 63	366	Helical; Name=7; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity|protein binding			upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(76;6.89e-05)|Acute lymphoblastic leukemia(125;7.02e-10)|all_hematologic(75;1.23e-06)|all_epithelial(107;0.0618)|Colorectal(196;0.0721)		BRCA - Breast invasive adenocarcinoma(108;0.0912)		TCAGCGGATTCAATGCAGACT	0.458													33	19					0	0	1	0	0
GPR63	81491	broad.mit.edu	37	6	97246961	97246961	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr6:97246961C>T	uc010kcl.2	-	3	1125	c.647G>A	c.(646-648)GGA>GAA	p.G216E	GPR63_uc003pou.2_Missense_Mutation_p.G216E	NM_001143957	NP_001137429	Q9BZJ6	GPR63_HUMAN	G protein-coupled receptor 63	216	Helical; Name=4; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity|protein binding			upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(76;6.89e-05)|Acute lymphoblastic leukemia(125;7.02e-10)|all_hematologic(75;1.23e-06)|all_epithelial(107;0.0618)|Colorectal(196;0.0721)		BRCA - Breast invasive adenocarcinoma(108;0.0912)		GTCGGGGTTTCCTACGGCTAA	0.463													43	32					0	0	1	0	0
ASCC3	10973	broad.mit.edu	37	6	101296521	101296521	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr6:101296521G>A	uc003pqk.2	-	4	633	c.304C>T	c.(304-306)CAC>TAC	p.H102Y	ASCC3_uc011eai.1_Missense_Mutation_p.H4Y|ASCC3_uc003pql.2_Missense_Mutation_p.H102Y|ASCC3_uc010kcv.2_Missense_Mutation_p.H102Y	NM_006828	NP_006819	Q8N3C0	HELC1_HUMAN	activating signal cointegrator 1 complex subunit	102					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|microtubule cytoskeleton	ATP binding|ATP-dependent helicase activity|nucleic acid binding			ovary(5)|skin(1)	6		all_cancers(76;1.45e-07)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(87;0.00149)|Hepatocellular(1;0.0893)|Colorectal(196;0.13)		BRCA - Breast invasive adenocarcinoma(108;0.0539)|all cancers(137;0.103)|GBM - Glioblastoma multiforme(226;0.199)		TCCTTCAAGTGAAATGTCATG	0.403													21	6					0	0	1	0	0
PRDM1	639	broad.mit.edu	37	6	106553106	106553106	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr6:106553106G>A	uc003prd.2	+	5	1305	c.1071G>A	c.(1069-1071)GGG>GGA	p.G357G	PRDM1_uc003pre.2_Silent_p.G223G	NM_001198	NP_001189	O75626	PRDM1_HUMAN	PR domain containing 1, with ZNF domain isoform	357					negative regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(54)|ovary(1)|skin(1)	56	Breast(9;0.022)	all_cancers(87;2.2e-31)|all_epithelial(87;2.03e-21)|Acute lymphoblastic leukemia(125;4.99e-11)|all_lung(197;7.55e-09)|all_hematologic(75;5.82e-08)|Lung NSC(302;1.28e-06)|Colorectal(196;0.0112)|Ovarian(999;0.0365)		all cancers(137;1.83e-46)|Epithelial(106;5.59e-35)|OV - Ovarian serous cystadenocarcinoma(136;1.99e-20)|GBM - Glioblastoma multiforme(226;3.72e-11)|BRCA - Breast invasive adenocarcinoma(108;1.38e-05)		GCAGCCCTGGGAATACGGTGT	0.627			D|N|Mis|F|S		DLBCL								25	17					0	0	1	0	0
AIM1	202	broad.mit.edu	37	6	106969185	106969185	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr6:106969185G>A	uc003prh.2	+	2	3365	c.2878G>A	c.(2878-2880)GAA>AAA	p.E960K		NM_001624	NP_001615	Q9Y4K1	AIM1_HUMAN	absent in melanoma 1	960							sugar binding			breast(4)|ovary(2)|upper_aerodigestive_tract(1)|large_intestine(1)|skin(1)	9	Breast(9;0.0138)|all_epithelial(6;0.169)	all_cancers(87;4.67e-25)|all_epithelial(87;5.46e-21)|Acute lymphoblastic leukemia(125;2.15e-07)|all_hematologic(75;5.28e-06)|Colorectal(196;3.46e-05)|all_lung(197;5.94e-05)|Lung NSC(302;7.26e-05)|Ovarian(999;0.00473)	Epithelial(6;0.00114)|all cancers(7;0.00726)|BRCA - Breast invasive adenocarcinoma(8;0.0114)|OV - Ovarian serous cystadenocarcinoma(5;0.0305)	all cancers(137;1.73e-50)|Epithelial(106;2.42e-48)|OV - Ovarian serous cystadenocarcinoma(136;1.51e-27)|BRCA - Breast invasive adenocarcinoma(108;0.00104)|GBM - Glioblastoma multiforme(226;0.00858)		TGATGATATGGAAAAGGCTAA	0.363													20	20					0	0	1	0	0
AKD1	221264	broad.mit.edu	37	6	109867326	109867326	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr6:109867326G>A	uc003ptn.2	-	26	3046	c.2969C>T	c.(2968-2970)CCT>CTT	p.P990L	AKD1_uc011eat.1_Missense_Mutation_p.P69L	NM_001145128	NP_001138600	Q5TCS8	AKD1_HUMAN	adenylate kinase domain containing 1 isoform 1	990					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|nucleoside-triphosphatase activity			ovary(1)	1						TCTTAATGGAGGAGCCTGTCA	0.443													49	41					0	0	1	0	0
FIG4	9896	broad.mit.edu	37	6	110036290	110036290	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr6:110036290C>T	uc003ptt.2	+	2	291	c.76C>T	c.(76-78)CTA>TTA	p.L26L	FIG4_uc011eau.1_5'UTR	NM_014845	NP_055660	Q92562	FIG4_HUMAN	Sac domain-containing inositol phosphatase 3	26					cell death	endosome membrane	protein binding			ovary(1)	1		all_cancers(87;8.63e-07)|Acute lymphoblastic leukemia(125;2.66e-08)|all_hematologic(75;1.13e-06)|all_epithelial(87;0.000124)|all_lung(197;0.0187)|Colorectal(196;0.0492)|Lung SC(18;0.0548)		OV - Ovarian serous cystadenocarcinoma(136;0.0355)|Epithelial(106;0.038)|all cancers(137;0.0425)|BRCA - Breast invasive adenocarcinoma(108;0.079)		GAGATACTTTCTAGTTGGGAG	0.299													22	12					0	0	1	0	0
STL	7955	broad.mit.edu	37	6	125232348	125232348	+	RNA	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr6:125232348G>A	uc003pzq.2	-	7		c.2386C>T				NR_026876				Homo sapiens mRNA; cDNA DKFZp451I132 (from clone DKFZp451I132).												0						CCCTTAAAATGGAAAGAATCA	0.433			T	ETV6	B-ALL								2	1					0	0	1	0	0
SAMD3	154075	broad.mit.edu	37	6	130536382	130536382	+	Silent	SNP	A	G	G			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr6:130536382A>G	uc003qbv.2	-	4	363	c.37T>C	c.(37-39)TTG>CTG	p.L13L	SAMD3_uc003qbx.2_Silent_p.L13L|SAMD3_uc003qbw.2_Silent_p.L13L|SAMD3_uc010kfg.1_Silent_p.L13L|SAMD3_uc003qby.2_Silent_p.L13L|SAMD3_uc003qbz.1_5'UTR	NM_001017373	NP_001017373	Q8N6K7	SAMD3_HUMAN	sterile alpha motif domain containing 3 isoform	13	SAM.									ovary(1)	1				GBM - Glioblastoma multiforme(226;0.00594)|OV - Ovarian serous cystadenocarcinoma(155;0.128)		TTCTCCACCAACCAACTGCAG	0.408													11	9					0	0	1	0	0
VNN2	8875	broad.mit.edu	37	6	133072469	133072469	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr6:133072469C>T	uc003qdt.2	-	5	1026	c.1015G>A	c.(1015-1017)GGA>AGA	p.G339R	VNN2_uc003qds.2_Missense_Mutation_p.G48R|VNN2_uc010kgb.2_Intron|VNN2_uc003qdv.2_Missense_Mutation_p.G286R	NM_004665	NP_004656	O95498	VNN2_HUMAN	vanin 2 isoform 1 precursor	339					cellular component movement|pantothenate metabolic process	anchored to membrane|plasma membrane	pantetheine hydrolase activity				0				OV - Ovarian serous cystadenocarcinoma(155;0.00237)|GBM - Glioblastoma multiforme(226;0.0267)		GAAATAAATCCCCTGAAAGTG	0.433													15	42					0	0	1	0	0
MAP3K5	4217	broad.mit.edu	37	6	136934327	136934327	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr6:136934327A>T	uc003qhc.2	-	17	2707	c.2346T>A	c.(2344-2346)TTT>TTA	p.F782L	MAP3K5_uc011edj.1_Missense_Mutation_p.F29L|MAP3K5_uc011edk.1_Missense_Mutation_p.F627L	NM_005923	NP_005914	Q99683	M3K5_HUMAN	mitogen-activated protein kinase kinase kinase	782	Protein kinase.				activation of JUN kinase activity|activation of MAPKK activity|cellular response to hydrogen peroxide|induction of apoptosis by extracellular signals|interspecies interaction between organisms		ATP binding|caspase activator activity|magnesium ion binding|MAP kinase kinase kinase activity|protein homodimerization activity|protein phosphatase binding			ovary(2)|skin(2)|lung(1)	5	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00137)|OV - Ovarian serous cystadenocarcinoma(155;0.00569)		GCTTTGTATAAAAGCCAATTG	0.368													13	28					0	0	1	0	0
OLIG3	167826	broad.mit.edu	37	6	137815222	137815222	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr6:137815222T>C	uc003qhp.1	-	1	310	c.86A>G	c.(85-87)CAC>CGC	p.H29R		NM_175747	NP_786923	Q7RTU3	OLIG3_HUMAN	oligodendrocyte transcription factor 3	29	Poly-His.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding				0	Breast(32;0.165)|Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00161)|OV - Ovarian serous cystadenocarcinoma(155;0.00447)		gtggtggtggtggcggtggtg	0.483													3	68					0	0	1	0	0
KIAA1244	57221	broad.mit.edu	37	6	138656161	138656161	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr6:138656161G>A	uc003qhu.2	+	33	6178	c.6178G>A	c.(6178-6180)GAC>AAC	p.D2060N		NM_020340	NP_065073	Q5TH69	BIG3_HUMAN	brefeldin A-inhibited guanine	2060					regulation of ARF protein signal transduction	cytoplasm|integral to membrane	ARF guanyl-nucleotide exchange factor activity			ovary(1)|skin(1)	2	Breast(32;0.135)			OV - Ovarian serous cystadenocarcinoma(155;0.00102)|GBM - Glioblastoma multiforme(68;0.00259)		CAGGGGCCAGGACTCCCCGCT	0.597													4	0					0	0	1	0	0
FBXO30	84085	broad.mit.edu	37	6	146127223	146127223	+	Missense_Mutation	SNP	A	C	C			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr6:146127223A>C	uc003qla.2	-	2	518	c.319T>G	c.(319-321)TAT>GAT	p.Y107D	uc003qky.1_Intron	NM_032145	NP_115521	Q8TB52	FBX30_HUMAN	F-box only protein 30	107	TRAF-type.						ubiquitin-protein ligase activity|zinc ion binding			ovary(2)|large_intestine(1)	3		Ovarian(120;0.0776)		OV - Ovarian serous cystadenocarcinoma(155;1.95e-07)|GBM - Glioblastoma multiforme(68;0.0149)		AGATTTTCATATGATTTCCGG	0.428													58	44					0	0	1	0	0
TIAM2	26230	broad.mit.edu	37	6	155451251	155451251	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr6:155451251C>T	uc003qqb.2	+	6	2167	c.894C>T	c.(892-894)TCC>TCT	p.S298S	TIAM2_uc003qqe.2_Silent_p.S298S	NM_012454	NP_036586	Q8IVF5	TIAM2_HUMAN	T-cell lymphoma invasion and metastasis 2	298					apoptosis|cellular lipid metabolic process|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|filopodium|growth cone|lamellipodium	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			ovary(3)|breast(1)	4		Ovarian(120;0.196)		OV - Ovarian serous cystadenocarcinoma(155;8.1e-13)|BRCA - Breast invasive adenocarcinoma(81;0.0053)		CCCTCTCCTCCCTCCGGGAAC	0.597													25	16					0	0	1	0	0
TIAM2	26230	broad.mit.edu	37	6	155458328	155458328	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr6:155458328G>A	uc003qqb.2	+	7	2485	c.1212G>A	c.(1210-1212)GAG>GAA	p.E404E	TIAM2_uc003qqe.2_Silent_p.E404E|TIAM2_uc010kjj.2_5'UTR	NM_012454	NP_036586	Q8IVF5	TIAM2_HUMAN	T-cell lymphoma invasion and metastasis 2	404					apoptosis|cellular lipid metabolic process|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|filopodium|growth cone|lamellipodium	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			ovary(3)|breast(1)	4		Ovarian(120;0.196)		OV - Ovarian serous cystadenocarcinoma(155;8.1e-13)|BRCA - Breast invasive adenocarcinoma(81;0.0053)		GGTCCAAGGAGGGCAGTGACT	0.512													13	19					0	0	1	0	0
LPA	4018	broad.mit.edu	37	6	161007579	161007579	+	Missense_Mutation	SNP	T	G	G			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr6:161007579T>G	uc003qtl.2	-	26	4151	c.4031A>C	c.(4030-4032)GAG>GCG	p.E1344A		NM_005577	NP_005568	P08519	APOA_HUMAN	lipoprotein Lp(a) precursor	3852	Kringle 34.				blood circulation|lipid metabolic process|lipid transport|lipoprotein metabolic process|proteolysis|receptor-mediated endocytosis	plasma lipoprotein particle	apolipoprotein binding|endopeptidase inhibitor activity|fibronectin binding|heparin binding|serine-type endopeptidase activity			ovary(3)|skin(2)|pancreas(1)	6		Breast(66;0.000496)|Ovarian(120;0.0303)|Prostate(117;0.0965)		OV - Ovarian serous cystadenocarcinoma(65;2.5e-17)|BRCA - Breast invasive adenocarcinoma(81;6.48e-06)	Aminocaproic Acid(DB00513)	GTTGCAGTACTCCCATCTGAC	0.507													37	31					0	0	1	0	0
UNC93A	54346	broad.mit.edu	37	6	167708113	167708113	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr6:167708113G>A	uc003qvq.2	+	2	371	c.196G>A	c.(196-198)GGC>AGC	p.G66S	UNC93A_uc003qvr.2_Missense_Mutation_p.G66S	NM_018974	NP_061847	Q86WB7	UN93A_HUMAN	unc-93 homolog A isoform 1	66	Helical; (Potential).					integral to membrane|plasma membrane					0		Breast(66;7.62e-05)|Ovarian(120;0.105)		OV - Ovarian serous cystadenocarcinoma(33;2.22e-20)|BRCA - Breast invasive adenocarcinoma(81;6.17e-07)|GBM - Glioblastoma multiforme(31;0.00492)		CGAGAGGCTGGGCTGCAAGGG	0.637													56	77					0	0	1	0	0
TTLL2	83887	broad.mit.edu	37	6	167754644	167754644	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr6:167754644G>A	uc003qvs.1	+	3	1344	c.1256G>A	c.(1255-1257)GGT>GAT	p.G419D	TTLL2_uc011egr.1_RNA	NM_031949	NP_114155	Q9BWV7	TTLL2_HUMAN	tubulin tyrosine ligase-like family, member 2	419	TTL.				protein modification process		ATP binding|tubulin-tyrosine ligase activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(66;7.8e-06)|Ovarian(120;0.024)		OV - Ovarian serous cystadenocarcinoma(33;2.22e-20)|BRCA - Breast invasive adenocarcinoma(81;6.17e-07)|GBM - Glioblastoma multiforme(31;0.00492)		TACTTAAATGGTCTAAGAAAT	0.443													31	21					0	0	1	0	0
FRMD1	79981	broad.mit.edu	37	6	168467476	168467476	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr6:168467476G>A	uc003qwo.3	-	4	485	c.420C>T	c.(418-420)TTC>TTT	p.F140F	FRMD1_uc003qwm.3_5'Flank|FRMD1_uc011egs.1_5'UTR|FRMD1_uc011egt.1_Silent_p.F52F|FRMD1_uc003qwn.3_Silent_p.F72F	NM_024919	NP_079195	Q8N878	FRMD1_HUMAN	FERM domain containing 1 isoform 1	140	FERM.					cytoskeleton	binding			ovary(1)	1		Breast(66;1.07e-05)|Ovarian(120;0.0728)		Epithelial(4;7.7e-30)|OV - Ovarian serous cystadenocarcinoma(33;5.82e-22)|BRCA - Breast invasive adenocarcinoma(4;1.38e-10)|GBM - Glioblastoma multiforme(31;0.000756)		GCACTCGGAGGAAGGCCACGA	0.547													33	26					0	0	1	0	0
MICALL2	79778	broad.mit.edu	37	7	1484878	1484878	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:1484878G>A	uc003skj.3	-	6	975	c.828C>T	c.(826-828)GCC>GCT	p.A276A	MICALL2_uc003ski.3_5'Flank	NM_182924	NP_891554	Q8IY33	MILK2_HUMAN	MICAL-like 2 isoform 1	276						cytoplasm|cytoskeleton	zinc ion binding			central_nervous_system(1)	1		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0178)|OV - Ovarian serous cystadenocarcinoma(56;6.01e-15)		TTGCCTCCTGGGCCTTCTGTG	0.677													3	17					0	0	1	0	0
INTS1	26173	broad.mit.edu	37	7	1516266	1516266	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:1516266G>A	uc003skn.2	-	37	5192	c.5091C>T	c.(5089-5091)TTC>TTT	p.F1697F	INTS1_uc003skm.1_5'Flank	NM_001080453	NP_001073922	Q8N201	INT1_HUMAN	integrator complex subunit 1	1697					snRNA processing	integral to membrane|integrator complex|nuclear membrane					0		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0181)|OV - Ovarian serous cystadenocarcinoma(56;6.99e-15)		AGGCCCAGAGGAAGTCCAGAG	0.662													27	37					0	0	1	0	0
SNX8	29886	broad.mit.edu	37	7	2296551	2296551	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:2296551G>A	uc003slw.2	-	10	1285	c.1242C>T	c.(1240-1242)ATC>ATT	p.I414I		NM_013321	NP_037453	Q9Y5X2	SNX8_HUMAN	sorting nexin 8	414					cell communication|early endosome to Golgi transport|intracellular protein transport	early endosome membrane	phosphatidylinositol binding|protein binding			large_intestine(1)|ovary(1)	2		Ovarian(82;0.11)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0853)|OV - Ovarian serous cystadenocarcinoma(56;3.79e-14)		AGGCGCGGAGGATGTGGGAGG	0.632													5	43					0	0	1	0	0
THSD7A	221981	broad.mit.edu	37	7	11452338	11452338	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:11452338C>T	uc003ssf.3	-	17	3879	c.3627G>A	c.(3625-3627)GAG>GAA	p.E1209E		NM_015204	NP_056019	Q9UPZ6	THS7A_HUMAN	thrombospondin, type I, domain containing 7A	1209	TSP type-1 11.|Extracellular (Potential).					integral to membrane				ovary(3)	3				UCEC - Uterine corpus endometrioid carcinoma (126;0.163)		AGGGTTCTTTCTCAACAGCAT	0.418										HNSCC(18;0.044)			7	31					0	0	1	0	0
PRPS1L1	221823	broad.mit.edu	37	7	18067187	18067187	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:18067187C>T	uc003stz.2	-	1	300	c.219G>A	c.(217-219)ATG>ATA	p.M73I		NM_175886	NP_787082	P21108	PRPS3_HUMAN	phosphoribosyl pyrophosphate synthetase 1-like	73					nucleoside metabolic process|ribonucleoside monophosphate biosynthetic process		ATP binding|kinase activity|magnesium ion binding|protein homodimerization activity|ribose phosphate diphosphokinase activity			ovary(1)	1	Lung NSC(10;0.0385)|all_lung(11;0.0736)					AGGCATTAATCATGATCAAAA	0.488													106	159					0	0	1	0	0
HDAC9	9734	broad.mit.edu	37	7	18975554	18975554	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:18975554C>T	uc003suh.2	+	22	2958	c.2917C>T	c.(2917-2919)CTA>TTA	p.L973L	HDAC9_uc003sue.2_Silent_p.L973L|HDAC9_uc003sui.2_Silent_p.L976L|HDAC9_uc003suj.2_Silent_p.L932L|HDAC9_uc003suk.2_Silent_p.L221L	NM_058176	NP_478056	Q9UKV0	HDAC9_HUMAN	histone deacetylase 9 isoform 1	973	Histone deacetylase.				B cell differentiation|cellular response to insulin stimulus|heart development|histone H3 deacetylation|histone H4 deacetylation|inflammatory response|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|peptidyl-lysine deacetylation|positive regulation of cell migration involved in sprouting angiogenesis|regulation of skeletal muscle fiber development|transcription, DNA-dependent	cytoplasm|histone deacetylase complex|histone methyltransferase complex|transcription factor complex	histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|histone deacetylase binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|protein binding|protein kinase C binding|repressing transcription factor binding|transcription corepressor activity			lung(2)|central_nervous_system(2)|kidney(1)	5	all_lung(11;0.187)				Valproic Acid(DB00313)	AAATGCCCTTCTAGGAAATGA	0.403													74	85					0	0	1	0	0
ITGB8	3696	broad.mit.edu	37	7	20418721	20418721	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:20418721C>T	uc003suu.2	+	4	1141	c.436C>T	c.(436-438)CCT>TCT	p.P146S	ITGB8_uc011jyh.1_Missense_Mutation_p.P11S|ITGB8_uc003sut.2_Missense_Mutation_p.P146S	NM_002214	NP_002205	P26012	ITB8_HUMAN	integrin, beta 8 precursor	146	VWFA.|Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|placenta blood vessel development	integrin complex	protein binding|receptor activity			skin(3)	3						GAAGAAATATCCTGTGGATCT	0.313													35	48					0	0	1	0	0
ITGB8	3696	broad.mit.edu	37	7	20421462	20421462	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:20421462G>A	uc003suu.2	+	6	1619	c.914G>A	c.(913-915)GGA>GAA	p.G305E	ITGB8_uc011jyh.1_Missense_Mutation_p.G170E|ITGB8_uc003sut.2_Missense_Mutation_p.G305E	NM_002214	NP_002205	P26012	ITB8_HUMAN	integrin, beta 8 precursor	305	VWFA.|Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|placenta blood vessel development	integrin complex	protein binding|receptor activity			skin(3)	3						CCCAATGACGGAAACTGTCAT	0.428													20	24					0	0	1	0	0
DNAH11	8701	broad.mit.edu	37	7	21840765	21840765	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:21840765G>A	uc003svc.2	+	63	10089	c.10058G>A	c.(10057-10059)CGA>CAA	p.R3353Q		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	3353	Potential.|Stalk (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						GATCTGGATCGAAATCTGAGC	0.368									Kartagener_syndrome				6	8					0	0	1	0	0
DNAH11	8701	broad.mit.edu	37	7	21847523	21847523	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:21847523C>T	uc003svc.2	+	64	10240	c.10209C>T	c.(10207-10209)TCC>TCT	p.S3403S		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	3403	Potential.|Stalk (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						GGGGTCAATCCATTAAGTCCT	0.448									Kartagener_syndrome				18	24					0	0	1	0	0
CLK2P	1197	broad.mit.edu	37	7	23625090	23625090	+	Missense_Mutation	SNP	A	C	C			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:23625090A>C	uc003swk.2	-	1	1057	c.407T>G	c.(406-408)GTG>GGG	p.V136G		NR_002711				SubName: Full=cDNA FLJ61616, highly similar to Dual specificity protein kinase CLK2 (EC 2.7.12.1); SubName: Full=CDC-like kinase 2, isoform CRA_c; SubName: Full=Putative uncharacterized protein CLK2;												0						TATACTCCACACATCACAAGG	0.507													19	22					0	0	1	0	0
MPP6	51678	broad.mit.edu	37	7	24708140	24708140	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:24708140G>A	uc003swx.2	+	10	1274	c.975G>A	c.(973-975)CAG>CAA	p.Q325Q	MPP6_uc003swy.2_Silent_p.Q325Q|MPP6_uc010kur.2_5'UTR	NM_016447	NP_057531	Q9NZW5	MPP6_HUMAN	membrane protein, palmitoylated 6	325					protein complex assembly		protein binding				0						ATGAAATCCAGATATATGAGG	0.358													15	15					0	0	1	0	0
FKBP9	11328	broad.mit.edu	37	7	33039749	33039749	+	Missense_Mutation	SNP	A	C	C			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:33039749A>C	uc003tdh.2	+	8	1430	c.1249A>C	c.(1249-1251)AAT>CAT	p.N417H	AVL9_uc011kai.1_Intron|FKBP9_uc011kak.1_RNA|FKBP9_uc011kal.1_Missense_Mutation_p.N470H|FKBP9_uc011kam.1_Missense_Mutation_p.N185H	NM_007270	NP_009201	O95302	FKBP9_HUMAN	FK506 binding protein 9 precursor	417	PPIase FKBP-type 4.				protein folding	endoplasmic reticulum|membrane	calcium ion binding|FK506 binding|peptidyl-prolyl cis-trans isomerase activity			central_nervous_system(13)|ovary(1)	14			GBM - Glioblastoma multiforme(11;0.0156)			CAAAACTTACAATATTGTTCT	0.443													21	100					0	0	1	0	0
NPSR1	387129	broad.mit.edu	37	7	34851398	34851398	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:34851398C>T	uc003teg.1	+	4	529	c.401C>T	c.(400-402)GCC>GTC	p.A134V	AAA1_uc010kwq.1_Intron|AAA1_uc011kaq.1_Intron|NPSR1_uc003teh.1_Missense_Mutation_p.A134V|NPSR1_uc010kwt.1_5'UTR|NPSR1_uc010kwu.1_Intron|NPSR1_uc010kwv.1_Intron|NPSR1_uc003tei.1_Missense_Mutation_p.A134V|NPSR1_uc010kww.1_Missense_Mutation_p.A123V|NPSR1_uc011kar.1_Intron|AAA1_uc010kwy.2_Intron|AAA1_uc003tek.3_Intron	NM_207172	NP_997055	Q6W5P4	NPSR1_HUMAN	G protein-coupled receptor for asthma	134	Helical; Name=3; (Potential).					cytoplasm|integral to membrane|plasma membrane	vasopressin receptor activity			skin(3)|pancreas(1)	4					Halothane(DB01159)	CTGCTCTACGCCTCTACCTAC	0.483													36	48					0	0	1	0	0
TARP	445347	broad.mit.edu	37	7	38304989	38304989	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:38304989C>T	uc003tge.1	-	5	1095	c.718G>A	c.(718-720)GGA>AGA	p.G240R	uc003tfz.1_Intron|TARP_uc003tgb.2_Missense_Mutation_p.G36R|TARP_uc003tgc.1_Missense_Mutation_p.G36R|TARP_uc003tgd.1_Missense_Mutation_p.G36R|TARP_uc010kxi.1_RNA|TARP_uc003tgf.1_RNA|TARP_uc003tgj.1_RNA|TARP_uc003tgh.1_RNA|TARP_uc003tgi.1_RNA|TARP_uc003tgg.1_RNA			A2JGV3	A2JGV3_HUMAN	Homo sapiens TCRgamma alternate reading frame protein (TCRg) mRNA, complete cds.	Error:Variant_position_missing_in_A2JGV3_after_alignment											0						TGATCAACTCCGTTTTTATTA	0.363													30	23					0	0	1	0	0
POU6F2	11281	broad.mit.edu	37	7	39504009	39504009	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:39504009C>T	uc003thb.1	+	10	1842	c.1800C>T	c.(1798-1800)ATC>ATT	p.I600I		NM_007252	NP_009183	P78424	PO6F2_HUMAN	POU class 6 homeobox 2 isoform 1	600					central nervous system development|ganglion mother cell fate determination|transcription from RNA polymerase II promoter|visual perception		sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1						CCGAGTTTATCGGGAGTGAAC	0.572													5	26					0	0	1	0	0
INHBA	3624	broad.mit.edu	37	7	41729272	41729272	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:41729272G>A	uc003thq.2	-	2	1492	c.1257C>T	c.(1255-1257)ATC>ATT	p.I419I	INHBA_uc003thr.2_Silent_p.I419I	NM_002192	NP_002183	P08476	INHBA_HUMAN	inhibin beta A precursor	419					cell cycle arrest|cell surface receptor linked signaling pathway|defense response|erythrocyte differentiation|eyelid development in camera-type eye|G1/S transition of mitotic cell cycle|growth|hair follicle development|hemoglobin biosynthetic process|hemopoietic progenitor cell differentiation|induction of apoptosis|male gonad development|negative regulation of B cell differentiation|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of follicle-stimulating hormone secretion|negative regulation of interferon-gamma biosynthetic process|negative regulation of macrophage differentiation|negative regulation of phosphorylation|nervous system development|odontogenesis|ovarian follicle development|palate development|positive regulation of erythrocyte differentiation|positive regulation of follicle-stimulating hormone secretion|positive regulation of ovulation|positive regulation of transcription from RNA polymerase II promoter|progesterone secretion|regulation of activin receptor signaling pathway	activin A complex|inhibin A complex	cytokine activity|follistatin binding|growth factor activity|hormone activity|identical protein binding|signal transducer activity			lung(5)|ovary(1)	6						ACTCCTCCACGATCATGTTCT	0.468										TSP Lung(11;0.080)			18	72					0	0	1	0	0
HECW1	23072	broad.mit.edu	37	7	43484247	43484247	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:43484247G>A	uc003tid.1	+	11	2081	c.1476G>A	c.(1474-1476)ACG>ACA	p.T492T	HECW1_uc011kbi.1_Silent_p.T492T	NM_015052	NP_055867	Q76N89	HECW1_HUMAN	NEDD4-like ubiquitin-protein ligase 1	492	Glu-rich.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	ubiquitin-protein ligase activity			ovary(8)|lung(6)|breast(4)|skin(4)|pancreas(1)	23						AGGAAGCAACGACCCAGAGCC	0.552													7	15					0	0	1	0	0
GCK	2645	broad.mit.edu	37	7	44192920	44192920	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:44192920C>T	uc003tkl.2	-	2	658	c.188G>A	c.(187-189)CGC>CAC	p.R63H	GCK_uc003tkj.1_Missense_Mutation_p.R62H|GCK_uc003tkk.1_Missense_Mutation_p.R64H	NM_000162	NP_000153	P35557	HXK4_HUMAN	glucokinase isoform 1	63					cellular response to insulin stimulus|cellular response to leptin stimulus|detection of glucose|endocrine pancreas development|glucose homeostasis|glucose transport|glycolysis|negative regulation of gluconeogenesis|positive regulation of glycogen biosynthetic process|positive regulation of insulin secretion|regulation of glucose transport|regulation of glycolysis|transmembrane transport	cytosol|nucleoplasm	ATP binding|glucokinase activity|glucose binding|protein binding			skin(3)|lung(1)	4						TGGGGTGGAGCGCACGTAGGT	0.612													66	283					0	0	1	0	0
NPC1L1	29881	broad.mit.edu	37	7	44571383	44571383	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:44571383C>T	uc003tlb.2	-	10	2664	c.2608G>A	c.(2608-2610)GGA>AGA	p.G870R	NPC1L1_uc003tlc.2_Missense_Mutation_p.G870R|NPC1L1_uc011kbw.1_Intron	NM_013389	NP_037521	Q9UHC9	NPCL1_HUMAN	Niemann-Pick C1-like protein 1 isoform 1	870	Extracellular (Potential).				cholesterol biosynthetic process|intestinal cholesterol absorption|lipoprotein metabolic process	apical plasma membrane|cytoplasmic vesicle membrane|integral to membrane	hedgehog receptor activity|protein binding			ovary(3)|central_nervous_system(1)|skin(1)	5					Ezetimibe(DB00973)	TGGTCCAGTCCCACGCTGATG	0.622													7	5					0	0	1	0	0
MYO1G	64005	broad.mit.edu	37	7	45007332	45007332	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:45007332C>T	uc003tmh.2	-	14	1798	c.1654G>A	c.(1654-1656)GAC>AAC	p.D552N	MYO1G_uc003tmf.2_5'UTR|MYO1G_uc003tmg.2_Missense_Mutation_p.D314N|MYO1G_uc010kym.2_Missense_Mutation_p.D437N|MYO1G_uc003tmi.1_Missense_Mutation_p.D464N	NM_033054	NP_149043	B0I1T2	MYO1G_HUMAN	myosin IG	552	Myosin head-like.					myosin complex|plasma membrane	actin binding|ATP binding|calmodulin binding|motor activity			breast(2)|ovary(1)|pancreas(1)	4						AGAGTGGGGTCCGTGCTGCAG	0.632													23	19					0	0	1	0	0
PKD1L1	168507	broad.mit.edu	37	7	47968883	47968883	+	Silent	SNP	G	A	A	rs142684649		TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:47968883G>A	uc003tny.1	-	7	978	c.978C>T	c.(976-978)TTC>TTT	p.F326F		NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	326	Extracellular (Potential).				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						AACTGTCCCCGAAATCCATCA	0.512													81	83					0	0	1	0	0
ABCA13	154664	broad.mit.edu	37	7	48311757	48311757	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:48311757C>T	uc003toq.2	+	17	2519	c.2494C>T	c.(2494-2496)CCC>TCC	p.P832S	ABCA13_uc010kyr.2_Missense_Mutation_p.P335S	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	832					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						TGAAATTAATCCCAAATTACT	0.313													10	16					0	0	1	0	0
ABCA13	154664	broad.mit.edu	37	7	48431662	48431662	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:48431662G>A	uc003toq.2	+	38	11824	c.11799G>A	c.(11797-11799)CGG>CGA	p.R3933R	ABCA13_uc010kys.1_Silent_p.R1007R|ABCA13_uc003tos.1_Silent_p.R759R|ABCA13_uc010kyt.1_RNA	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	3933	ABC transporter 1.				transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						TCACCGTCCGGGAACATTTGC	0.512													13	42					0	0	1	0	0
POM121L12	285877	broad.mit.edu	37	7	53103787	53103787	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:53103787C>T	uc003tpz.2	+	1	439	c.423C>T	c.(421-423)ATC>ATT	p.I141I		NM_182595	NP_872401	Q8N7R1	P1L12_HUMAN	POM121 membrane glycoprotein-like 12	141											0						CCATCGGGATCGCGCCCCCTG	0.582													7	27					0	0	1	0	0
POM121L12	285877	broad.mit.edu	37	7	53103940	53103940	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:53103940C>T	uc003tpz.2	+	1	592	c.576C>T	c.(574-576)TTC>TTT	p.F192F		NM_182595	NP_872401	Q8N7R1	P1L12_HUMAN	POM121 membrane glycoprotein-like 12	192											0						GCGCTAGGTTCGACGGGCCGT	0.587													28	33					0	0	1	0	0
POM121L12	285877	broad.mit.edu	37	7	53104167	53104167	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:53104167G>A	uc003tpz.2	+	1	819	c.803G>A	c.(802-804)TGG>TAG	p.W268*		NM_182595	NP_872401	Q8N7R1	P1L12_HUMAN	POM121 membrane glycoprotein-like 12	268											0						TGGGACTTCTGGGAGGCGACA	0.637													14	48					0	0	1	0	0
FKBP9L	360132	broad.mit.edu	37	7	55752867	55752867	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:55752867C>T	uc010kzl.2	-	5	683	c.583G>A	c.(583-585)GAG>AAG	p.E195K	FKBP9L_uc010kzk.2_Missense_Mutation_p.E84K|FKBP9L_uc003tqt.2_Missense_Mutation_p.E84K|FKBP9L_uc011kcs.1_Missense_Mutation_p.E84K	NR_003949				SubName: Full=cDNA, FLJ79189, highly similar to FK506-binding protein 9 (EC 5.2.1.8);												0						TTAGTTACCTCTTCCAGGAGG	0.542													9	7					0	0	1	0	0
ZNF735	730291	broad.mit.edu	37	7	63667612	63667612	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:63667612G>A	uc011kdn.1	+	1	32	c.32G>A	c.(31-33)CGA>CAA	p.R11Q		NM_001159524	NP_001152996	P0CB33	ZN735_HUMAN	zinc finger protein 735	11					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CCTGGAAGCCGAGAAATGGTG	0.577													18	24					0	0	1	0	0
ZNF117	51351	broad.mit.edu	37	7	64439075	64439075	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:64439075G>A	uc003ttr.2	-	4	2159	c.874C>T	c.(874-876)CTT>TTT	p.L292F		NM_015852	NP_056936	Q03924	ZN117_HUMAN	zinc finger protein 117	292	C2H2-type 7.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(1)	1		Lung NSC(55;0.0295)|all_lung(88;0.0691)				TGTGTAGTAAGGGTTGAGGAC	0.358													14	19					0	0	1	0	0
WBSCR17	64409	broad.mit.edu	37	7	70885994	70885994	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:70885994G>A	uc003tvy.2	+	5	865	c.865G>A	c.(865-867)GAG>AAG	p.E289K	WBSCR17_uc003tvz.2_5'UTR	NM_022479	NP_071924	Q6IS24	GLTL3_HUMAN	UDP-GalNAc:polypeptide	289	Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			skin(3)|upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)|central_nervous_system(1)	7		all_cancers(73;0.2)|Lung NSC(55;0.094)|all_lung(88;0.125)				GCAGCGGTACGAGAACTCGGC	0.587													52	59					0	0	1	0	0
MLXIPL	51085	broad.mit.edu	37	7	73030423	73030423	+	Silent	SNP	G	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:73030423G>T	uc003tyn.1	-	2	426	c.378C>A	c.(376-378)ATC>ATA	p.I126I	MLXIPL_uc003tyk.1_Silent_p.I126I|MLXIPL_uc003tyl.1_Silent_p.I126I|MLXIPL_uc003tym.1_Silent_p.I126I|MLXIPL_uc003tyo.1_RNA|MLXIPL_uc003typ.1_Silent_p.I126I	NM_032951	NP_116569	Q9NP71	WBS14_HUMAN	Williams Beuren syndrome chromosome region 14	126					anatomical structure morphogenesis|energy reserve metabolic process|glucose mediated signaling pathway|intracellular protein kinase cascade|negative regulation of cell cycle arrest|negative regulation of oxidative phosphorylation|negative regulation of peptidyl-serine phosphorylation|positive regulation of cell proliferation|positive regulation of fatty acid biosynthetic process|positive regulation of glycolysis|positive regulation of transcription from RNA polymerase II promoter|triglyceride homeostasis	cytosol|transcription factor complex	carbohydrate response element binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity|transcription factor binding			pancreas(1)	1		Lung NSC(55;0.0659)|all_lung(88;0.152)				AGGCCCTCCAGATGGCGTTGT	0.582													25	47					2.48779e-11	2.51545e-11	1	1	0
LOC100132832	100132832	broad.mit.edu	37	7	76681160	76681160	+	RNA	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:76681160C>T	uc003ufy.2	+	5		c.1137C>T				NR_028058				Homo sapiens cDNA FLJ59034 complete cds, moderately similar to Protein deltex-2.												0						GAATAAAGTTCCTGCTGAAAA	0.463													8	33					0	0	1	0	0
FGL2	10875	broad.mit.edu	37	7	76826128	76826128	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:76826128T>C	uc003ugb.2	-	2	828	c.788A>G	c.(787-789)AAC>AGC	p.N263S	CCDC146_uc003ufz.1_Intron|CCDC146_uc003uga.2_Intron	NM_006682	NP_006673	Q14314	FGL2_HUMAN	fibrinogen-like 2 precursor	263	Fibrinogen C-terminal.				signal transduction	fibrinogen complex	receptor binding			skin(2)	2						TCTGGTGAAGTTGGTGCTCCC	0.483													40	66					0	0	1	0	0
HGF	3082	broad.mit.edu	37	7	81374415	81374415	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:81374415C>T	uc003uhl.2	-	6	812	c.647G>A	c.(646-648)GGG>GAG	p.G216E	HGF_uc003uhm.2_Missense_Mutation_p.G211E|HGF_uc003uhn.1_Missense_Mutation_p.G216E|HGF_uc003uho.1_Missense_Mutation_p.G211E	NM_000601	NP_000592	P14210	HGF_HUMAN	hepatocyte growth factor isoform 1	216	Kringle 2.				epithelial to mesenchymal transition|mitosis|platelet activation|platelet degranulation|proteolysis|regulation of branching involved in salivary gland morphogenesis by mesenchymal-epithelial signaling	platelet alpha granule lumen	growth factor activity|serine-type endopeptidase activity			ovary(2)|central_nervous_system(2)	4						ATAACTCTCCCCATTGCAGGT	0.413													7	29					0	0	1	0	0
HGF	3082	broad.mit.edu	37	7	81381528	81381528	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:81381528C>T	uc003uhl.2	-	5	698	c.533G>A	c.(532-534)CGA>CAA	p.R178Q	HGF_uc003uhm.2_Missense_Mutation_p.R173Q|HGF_uc003uhn.1_Missense_Mutation_p.R178Q|HGF_uc003uho.1_Missense_Mutation_p.R173Q|HGF_uc003uhp.2_Missense_Mutation_p.R178Q	NM_000601	NP_000592	P14210	HGF_HUMAN	hepatocyte growth factor isoform 1	178	Kringle 1.				epithelial to mesenchymal transition|mitosis|platelet activation|platelet degranulation|proteolysis|regulation of branching involved in salivary gland morphogenesis by mesenchymal-epithelial signaling	platelet alpha granule lumen	growth factor activity|serine-type endopeptidase activity			ovary(2)|central_nervous_system(2)	4						TCGAGGATTTCGACAGTAGTT	0.418													5	48					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82474748	82474748	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:82474748G>A	uc003uhx.2	-	13	14174	c.13885C>T	c.(13885-13887)CAG>TAG	p.Q4629*	PCLO_uc003uhv.2_Nonsense_Mutation_p.Q4629*|PCLO_uc003uht.1_Nonsense_Mutation_p.Q80*|PCLO_uc003uhu.1_Nonsense_Mutation_p.Q59*	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	4517					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GAAACCTTCTGGAGTTCTGCT	0.443													6	18					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82545814	82545814	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:82545814C>T	uc003uhx.2	-	7	11777	c.11488G>A	c.(11488-11490)GAT>AAT	p.D3830N	PCLO_uc003uhv.2_Missense_Mutation_p.D3830N|PCLO_uc010lec.2_Missense_Mutation_p.D795N	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	3761					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TAATCACGATCCTCAGCTACT	0.473													19	69					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82579967	82579967	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:82579967G>A	uc003uhx.2	-	6	10226	c.9937C>T	c.(9937-9939)CGG>TGG	p.R3313W	PCLO_uc003uhv.2_Missense_Mutation_p.R3313W|PCLO_uc010lec.2_Missense_Mutation_p.R278W	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	3244	Gln-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TAGATCTGCCGAATCTTTTGC	0.493													39	50					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82580054	82580054	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:82580054C>T	uc003uhx.2	-	6	10139	c.9850G>A	c.(9850-9852)GAG>AAG	p.E3284K	PCLO_uc003uhv.2_Missense_Mutation_p.E3284K|PCLO_uc010lec.2_Missense_Mutation_p.E249K	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	3215	Gln-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GCTAACGTCTCCTGCCTCATC	0.493													48	79					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82582230	82582230	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:82582230G>A	uc003uhx.2	-	5	8328	c.8039C>T	c.(8038-8040)TCA>TTA	p.S2680L	PCLO_uc003uhv.2_Missense_Mutation_p.S2680L|PCLO_uc010lec.2_5'Flank	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	2611					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TCTGGTTGCTGAAACCTCAGT	0.448													27	51					0	0	1	0	0
GRM3	2913	broad.mit.edu	37	7	86394514	86394514	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:86394514G>A	uc003uid.2	+	2	1152	c.53G>A	c.(52-54)GGA>GAA	p.G18E	GRM3_uc010lef.2_Missense_Mutation_p.G16E|GRM3_uc010leg.2_Intron|GRM3_uc010leh.2_Intron	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	18					synaptic transmission	integral to plasma membrane				lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	TTTTCAAAGGGATTTTTACTC	0.398													44	73					0	0	1	0	0
ABCB4	5244	broad.mit.edu	37	7	87079386	87079386	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:87079386T>C	uc003uiv.1	-	8	807	c.731A>G	c.(730-732)AAA>AGA	p.K244R	ABCB4_uc003uiw.1_Missense_Mutation_p.K244R|ABCB4_uc003uix.1_Missense_Mutation_p.K244R	NM_018849	NP_061337	P21439	MDR3_HUMAN	ATP-binding cassette, subfamily B, member 4	244	ABC transmembrane type-1 1.|Cytoplasmic (By similarity).				cellular lipid metabolic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|xenobiotic-transporting ATPase activity			ovary(4)|skin(1)|pancreas(1)	6	Esophageal squamous(14;0.0058)|all_lung(186;0.201)|Lung NSC(181;0.203)					AGCTAGTTCTTTGTCACTAAA	0.478													17	58					0	0	1	0	0
ABCB1	5243	broad.mit.edu	37	7	87138779	87138779	+	Missense_Mutation	SNP	T	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:87138779T>A	uc003uiz.1	-	27	3719	c.3301A>T	c.(3301-3303)ATA>TTA	p.I1101L	ABCB1_uc011khc.1_Missense_Mutation_p.I1037L	NM_000927	NP_000918	P08183	MDR1_HUMAN	ATP-binding cassette, subfamily B, member 1	1101	Cytoplasmic (Potential).|ABC transporter 2.				G2/M transition of mitotic cell cycle|stem cell proliferation	apical plasma membrane|cell surface|Golgi membrane|integral to membrane|intercellular canaliculus|membrane fraction	ATP binding|protein binding|xenobiotic-transporting ATPase activity			ovary(4)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	7	Esophageal squamous(14;0.00164)				Adenosine triphosphate(DB00171)|Alfentanil(DB00802)|Arsenic trioxide(DB01169)|Atazanavir(DB01072)|Carvedilol(DB01136)|Colchicine(DB01394)|Cyclosporine(DB00091)|Daunorubicin(DB00694)|Dipyridamole(DB00975)|Estramustine(DB01196)|Flupenthixol(DB00875)|Imatinib(DB00619)|Itraconazole(DB01167)|Nicardipine(DB00622)|Propafenone(DB01182)|Quinacrine(DB01103)|Quinidine(DB00908)|Ranolazine(DB00243)|Rifampin(DB01045)|Roxithromycin(DB00778)|Saquinavir(DB01232)|Tamoxifen(DB00675)|Vinblastine(DB00570)	AGTCGCTTTATTTCTTTGCCA	0.458													9	53					0	0	1	0	0
RUNDC3B	154661	broad.mit.edu	37	7	87436815	87436815	+	Missense_Mutation	SNP	C	T	T	rs150419056		TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:87436815C>T	uc003ujb.2	+	10	1546	c.1135C>T	c.(1135-1137)CAC>TAC	p.H379Y	RUNDC3B_uc011khd.1_Missense_Mutation_p.H362Y|RUNDC3B_uc011khe.1_Missense_Mutation_p.H362Y|RUNDC3B_uc003ujc.2_Intron|RUNDC3B_uc003ujd.2_Intron	NM_138290	NP_612147	Q96NL0	RUN3B_HUMAN	RUN domain containing 3B isoform a	379										skin(1)	1	Esophageal squamous(14;0.00164)					TTACCGAAAACACAATAAACA	0.393													6	23					0	0	1	0	0
STEAP4	79689	broad.mit.edu	37	7	87913428	87913428	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:87913428G>A	uc003ujs.2	-	2	262	c.157C>T	c.(157-159)CAG>TAG	p.Q53*	STEAP4_uc010lek.2_Nonsense_Mutation_p.Q53*|STEAP4_uc003ujt.2_Nonsense_Mutation_p.Q53*	NM_024636	NP_078912	Q687X5	STEA4_HUMAN	tumor necrosis factor, alpha-induced protein 9	53					fat cell differentiation|ion transport|iron ion homeostasis	Golgi membrane|integral to membrane|plasma membrane	electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|oxidoreductase activity				0	Esophageal squamous(14;0.00802)					GTGGTCTTCTGGGGGTTTCGA	0.438													36	43					0	0	1	0	0
SGCE	8910	broad.mit.edu	37	7	94259138	94259138	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:94259138G>A	uc003unl.2	-	2	236	c.125C>T	c.(124-126)TCC>TTC	p.S42F	SGCE_uc003unm.2_Missense_Mutation_p.S42F|SGCE_uc003unn.2_Missense_Mutation_p.S42F|SGCE_uc011kic.1_Intron|SGCE_uc011kid.1_Missense_Mutation_p.S78F	NM_003919	NP_003910	O43556	SGCE_HUMAN	sarcoglycan, epsilon isoform 2	42	Extracellular (Potential).				cell-matrix adhesion|muscle organ development	cytoplasm|cytoskeleton|integral to plasma membrane|sarcoglycan complex|sarcolemma	calcium ion binding			ovary(1)	1	all_cancers(62;8.26e-10)|all_epithelial(64;5.59e-09)|Lung NSC(181;0.188)|all_lung(186;0.215)		STAD - Stomach adenocarcinoma(171;0.0031)			GTGTACCTTGGAGAAAATACT	0.383													30	30					0	0	1	0	0
CYP3A5	1577	broad.mit.edu	37	7	99264686	99264686	+	Silent	SNP	A	G	G			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:99264686A>G	uc003urq.2	-	5	408	c.321T>C	c.(319-321)TCT>TCC	p.S107S	ZNF498_uc003urn.2_Intron|CYP3A5_uc003urp.2_5'UTR|CYP3A5_uc003urr.2_5'UTR|CYP3A5_uc011kiy.1_Silent_p.S97S|CYP3A5_uc003urs.2_Intron|CYP3A5_uc010lgg.2_Intron	NM_000777	NP_000768	P20815	CP3A5_HUMAN	cytochrome P450, family 3, subfamily A,	107					alkaloid catabolic process|drug catabolic process|oxidative demethylation|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding				0	all_epithelial(64;2.77e-08)|Lung NSC(181;0.00396)|all_lung(186;0.00659)|Esophageal squamous(72;0.0166)				Alfentanil(DB00802)|Clopidogrel(DB00758)|Cyclosporine(DB00091)|Daunorubicin(DB00694)|Indinavir(DB00224)|Irinotecan(DB00762)|Ketoconazole(DB01026)|Lapatinib(DB01259)|Mephenytoin(DB00532)|Midazolam(DB00683)|Mifepristone(DB00834)|Phenytoin(DB00252)|Quinine(DB00468)|Saquinavir(DB01232)|Tacrolimus(DB00864)|Troleandomycin(DB01361)|Verapamil(DB00661)|Vincristine(DB00541)	CTGGGCCTAAAGACTAGAGTT	0.383													9	12					0	0	1	0	0
CYP3A7	1551	broad.mit.edu	37	7	99314848	99314848	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:99314848C>T	uc003uru.2	-	6	578	c.473G>A	c.(472-474)AGA>AAA	p.R158K	ZNF498_uc003urn.2_Intron|CYP3A5_uc003urs.2_Intron|CYP3A5_uc010lgg.2_Intron	NM_000765	NP_000756	P24462	CP3A7_HUMAN	cytochrome P450, family 3, subfamily A,	158					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)	1	Lung NSC(181;0.0144)|Esophageal squamous(72;0.0166)|all_lung(186;0.0228)					CCTCAGATTTCTCACCAACAC	0.502													48	85					0	0	1	0	0
ZAN	7455	broad.mit.edu	37	7	100350347	100350347	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:100350347C>T	uc003uwj.2	+	14	2784	c.2619C>T	c.(2617-2619)ATC>ATT	p.I873I	ZAN_uc003uwk.2_Silent_p.I873I|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	873	66 X heptapeptide repeats (approximate) (mucin-like domain).|Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			AACTCACCATCCCCACGGAAA	0.493													16	50					0	0	1	0	0
SRRT	51593	broad.mit.edu	37	7	100484424	100484424	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:100484424C>T	uc003uwy.2	+	15	1924	c.1656C>T	c.(1654-1656)CCC>CCT	p.P552P	SRRT_uc010lhl.1_Silent_p.P551P|SRRT_uc003uxa.2_Silent_p.P551P|SRRT_uc003uwz.2_Silent_p.P552P	NM_015908	NP_056992	Q9BXP5	SRRT_HUMAN	arsenate resistance protein 2 isoform a	552					cell proliferation|primary miRNA processing|response to arsenic-containing substance	cytoplasm|nucleoplasm	protein binding			ovary(2)	2						AGAGCCTGCCCTCGCAAAACC	0.567													10	19					0	0	1	0	0
Unknown	0	broad.mit.edu	37	7	100552019	100552019	+	RNA	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:100552019C>T	uc003uxk.1	+	1		c.1270C>T			uc003uxl.1_Missense_Mutation_p.S157F					Homo sapiens MUC3B mRNA for intestinal mucin, partial cds.																		CCAGTGTTCTCCACTACCATT	0.433													78	500					0	0	1	0	0
SERPINE1	5054	broad.mit.edu	37	7	100780299	100780299	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:100780299C>T	uc003uxt.2	+	8	1253	c.1105C>T	c.(1105-1107)CGC>TGC	p.R369C	SERPINE1_uc011kkj.1_Missense_Mutation_p.R354C|SERPINE1_uc003uxu.1_3'UTR	NM_000602	NP_000593	P05121	PAI1_HUMAN	plasminogen activator inhibitor-1 isoform 1	369		Reactive bond.			angiogenesis|cellular response to chemical stimulus|cellular response to lipopolysaccharide|chronological cell aging|defense response to Gram-negative bacterium|fibrinolysis|negative regulation of apoptosis|negative regulation of cell adhesion mediated by integrin|negative regulation of fibrinolysis|negative regulation of plasminogen activation|negative regulation of smooth muscle cell migration|negative regulation of smooth muscle cell-matrix adhesion|negative regulation of vascular wound healing|platelet activation|platelet degranulation|positive regulation of angiogenesis|positive regulation of interleukin-8 production|positive regulation of leukotriene production involved in inflammatory response|positive regulation of monocyte chemotaxis|positive regulation of receptor-mediated endocytosis|regulation of receptor activity	extracellular matrix|extracellular space|plasma membrane|platelet alpha granule lumen	protease binding|serine-type endopeptidase inhibitor activity			ovary(1)|lung(1)|central_nervous_system(1)	3	Lung NSC(181;0.136)|all_lung(186;0.182)				Atorvastatin(DB01076)|Dimethyl sulfoxide(DB01093)|Drotrecogin alfa(DB00055)|Simvastatin(DB00641)|Tenecteplase(DB00031)|Troglitazone(DB00197)|Urokinase(DB00013)	AGTCTCAGCCCGCATGGCCCC	0.557													20	62					0	0	1	0	0
ORAI2	80228	broad.mit.edu	37	7	102087156	102087156	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:102087156G>A	uc010lhz.1	+	4	657	c.422G>A	c.(421-423)CGC>CAC	p.R141H	ORAI2_uc003uzj.2_Missense_Mutation_p.R141H|ORAI2_uc003uzk.2_Missense_Mutation_p.R141H|ORAI2_uc011kks.1_Missense_Mutation_p.R64H	NM_001126340	NP_001119812	Q96SN7	ORAI2_HUMAN	ORAI calcium release-activated calcium modulator	141						integral to membrane	protein binding			ovary(1)|kidney(1)	2						CCGCATGAGCGCATGCACCCC	0.607													4	107					0	0	1	0	0
SLC26A5	375611	broad.mit.edu	37	7	103051974	103051974	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:103051974C>T	uc003vbz.2	-	6	699	c.463G>A	c.(463-465)GAT>AAT	p.D155N	SLC26A5_uc003vbt.1_Missense_Mutation_p.D155N|SLC26A5_uc003vbu.1_Missense_Mutation_p.D155N|SLC26A5_uc003vbv.1_Missense_Mutation_p.D155N|SLC26A5_uc003vbw.2_RNA|SLC26A5_uc003vbx.2_Missense_Mutation_p.D155N|SLC26A5_uc003vby.2_RNA|SLC26A5_uc010liy.2_RNA	NM_198999	NP_945350	P58743	S26A5_HUMAN	prestin isoform a	155	Extracellular (Potential).				regulation of cell shape|sensory perception of sound	integral to membrane	secondary active sulfate transmembrane transporter activity			ovary(1)	1						ATGACTATATCATCTGGTACT	0.443													17	32					0	0	1	0	0
RELN	5649	broad.mit.edu	37	7	103185765	103185765	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:103185765C>T	uc003vca.2	-	42	6489	c.6329G>A	c.(6328-6330)GGA>GAA	p.G2110E	RELN_uc010liz.2_Missense_Mutation_p.G2110E	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	2110					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		AGGGTAAAATCCCTGGTACCA	0.458													8	32					0	0	1	0	0
RELN	5649	broad.mit.edu	37	7	103206793	103206793	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:103206793C>T	uc003vca.2	-	33	4974	c.4814G>A	c.(4813-4815)GGA>GAA	p.G1605E	RELN_uc010liz.2_Missense_Mutation_p.G1605E	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	1605					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		GTCTTGAAATCCAGTTTGAGA	0.413													4	52					0	0	1	0	0
SYPL1	6856	broad.mit.edu	37	7	105739611	105739611	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:105739611G>A	uc003vdp.2	-	3	323	c.241C>T	c.(241-243)CCA>TCA	p.P81S	SYPL1_uc003vdo.2_Missense_Mutation_p.P63S	NM_006754	NP_006745	Q16563	SYPL1_HUMAN	synaptophysin-like 1 isoform a	81	MARVEL.|Vesicular (Potential).				synaptic transmission	cytoplasmic vesicle membrane|integral to plasma membrane|melanosome|synaptic vesicle	transporter activity				0						CACCTGAATGGATAACCAAAA	0.363													45	53					0	0	1	0	0
PIK3CG	5294	broad.mit.edu	37	7	106513253	106513253	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:106513253C>T	uc003vdv.3	+	4	2242	c.2157C>T	c.(2155-2157)GCC>GCT	p.A719A	PIK3CG_uc003vdu.2_Silent_p.A719A|PIK3CG_uc003vdw.2_Silent_p.A719A	NM_002649	NP_002640	P48736	PK3CG_HUMAN	phosphoinositide-3-kinase, catalytic, gamma	719					G-protein coupled receptor protein signaling pathway|phosphatidylinositol-mediated signaling|platelet activation	phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity|protein binding			lung(16)|central_nervous_system(8)|breast(5)|pancreas(3)|stomach(2)|ovary(2)|upper_aerodigestive_tract(1)|skin(1)	38						TTCTGGAAGCCTATCTGAGGG	0.448													18	78					0	0	1	0	0
LAMB4	22798	broad.mit.edu	37	7	107735767	107735767	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:107735767G>A	uc010ljo.1	-	12	1460	c.1376C>T	c.(1375-1377)CCC>CTC	p.P459L	LAMB4_uc003vey.2_Missense_Mutation_p.P459L	NM_007356	NP_031382	A4D0S4	LAMB4_HUMAN	laminin, beta 4 precursor	459	Laminin EGF-like 4.				cell adhesion	basement membrane				ovary(4)|breast(2)|large_intestine(1)|skin(1)	8						ACTCCCAAGGGGGTTACAGTC	0.463													15	43					0	0	1	0	0
PPP1R3A	5506	broad.mit.edu	37	7	113518696	113518696	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:113518696C>T	uc010ljy.1	-	4	2482	c.2451G>A	c.(2449-2451)ATG>ATA	p.M817I		NM_002711	NP_002702	Q16821	PPR3A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	817					glycogen metabolic process	integral to membrane				lung(9)|ovary(9)|pancreas(7)|skin(6)|breast(2)|prostate(1)	34						CTTCCTTCTCCATTTCATCTA	0.378													23	58					0	0	1	0	0
MET	4233	broad.mit.edu	37	7	116340221	116340221	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:116340221C>T	uc003vij.2	+	2	1270	c.1083C>T	c.(1081-1083)GCC>GCT	p.A361A	MET_uc010lkh.2_Silent_p.A361A|MET_uc011knc.1_Silent_p.A361A|MET_uc011knd.1_Silent_p.A361A|MET_uc011kne.1_Silent_p.A361A|MET_uc011knf.1_Silent_p.A361A|MET_uc011kng.1_Silent_p.A361A|MET_uc011knh.1_Silent_p.A361A|MET_uc011kni.1_Silent_p.A361A|MET_uc003vii.1_Silent_p.A380A|MET_uc010lkg.2_Silent_p.A361A|MET_uc011kmz.1_Silent_p.A361A|MET_uc011kna.1_Silent_p.A361A|MET_uc011knb.1_Silent_p.A361A	NM_000245	NP_000236	P08581	MET_HUMAN	met proto-oncogene isoform b precursor	361	Extracellular (Potential).|Sema.				axon guidance|cell proliferation	basal plasma membrane|integral to plasma membrane	ATP binding|hepatocyte growth factor receptor activity|protein binding			upper_aerodigestive_tract(63)|lung(41)|kidney(18)|NS(10)|ovary(5)|thyroid(4)|central_nervous_system(4)|stomach(3)|liver(3)|pleura(2)|large_intestine(2)|breast(2)|testis(1)|skin(1)	159	all_cancers(3;1.25e-07)|all_epithelial(6;4.07e-08)|Lung NSC(10;0.00108)|all_lung(10;0.00125)	Ovarian(593;0.133)	GBM - Glioblastoma multiforme(2;2.31e-07)|all cancers(2;0.000419)|STAD - Stomach adenocarcinoma(10;0.000512)			ATCGATCTGCCATGTGTGCAT	0.443			Mis		papillary renal|head-neck squamous cell 	papillary renal			Hereditary_Papillary_Renal_Carcinoma_(type_1)				4	34					0	0	1	0	0
ST7	7982	broad.mit.edu	37	7	116862019	116862019	+	Missense_Mutation	SNP	T	G	G			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:116862019T>G	uc003vin.2	+	15	1755	c.1541T>G	c.(1540-1542)TTC>TGC	p.F514C	ST7_uc011knl.1_Missense_Mutation_p.F491C|ST7_uc003vio.2_Missense_Mutation_p.F491C|ST7_uc003viq.2_Missense_Mutation_p.F468C|ST7_uc011knm.1_Missense_Mutation_p.F471C|ST7_uc003vir.2_Missense_Mutation_p.F434C|ST7_uc011knn.1_Intron	NM_021908	NP_068708	Q9NRC1	ST7_HUMAN	suppression of tumorigenicity 7 isoform b	514	Helical; (Potential).					integral to membrane	binding			central_nervous_system(1)|skin(1)	2	all_cancers(3;3.88e-07)|all_epithelial(6;3.42e-07)|Lung NSC(10;0.00072)|all_lung(10;0.000847)		STAD - Stomach adenocarcinoma(10;0.000512)	LUSC - Lung squamous cell carcinoma(290;0.133)		GAGCTTCCCTTCTTTATTCTC	0.483													19	63					0	0	1	0	0
ASZ1	136991	broad.mit.edu	37	7	117066916	117066916	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:117066916G>A	uc003vjb.2	-	2	242	c.179C>T	c.(178-180)TCA>TTA	p.S60L	ASZ1_uc011kno.1_Missense_Mutation_p.S60L|ASZ1_uc011knp.1_5'UTR	NM_130768	NP_570124	Q8WWH4	ASZ1_HUMAN	ankyrin repeat, SAM and basic leucine zipper	60	ANK 1.				cell differentiation|DNA methylation involved in gamete generation|gene silencing by RNA|male meiosis|multicellular organismal development|piRNA metabolic process|spermatogenesis	pi-body	signal transducer activity			central_nervous_system(2)|ovary(1)	3	Lung NSC(10;0.00156)|all_lung(10;0.00175)		STAD - Stomach adenocarcinoma(10;0.000512)			CTGGACCAATGAAACATCTCC	0.333													37	113					0	0	1	0	0
CFTR	1080	broad.mit.edu	37	7	117282491	117282491	+	Splice_Site	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:117282491G>A	uc003vjd.2	+	23	3850	c.3718_splice	c.e23-1	p.V1240_splice	CFTR_uc011knq.1_Splice_Site_p.V646_splice	NM_000492	NP_000483	P13569	CFTR_HUMAN	cystic fibrosis transmembrane conductance						respiratory gaseous exchange	apical plasma membrane|basolateral plasma membrane|chloride channel complex|early endosome membrane	ATP binding|ATP-binding and phosphorylation-dependent chloride channel activity|channel-conductance-controlling ATPase activity|chloride channel regulator activity|enzyme binding|PDZ domain binding			central_nervous_system(2)|skin(2)|ovary(1)	5	Lung NSC(10;0.00148)|all_lung(10;0.00171)		STAD - Stomach adenocarcinoma(10;0.000534)		Bumetanide(DB00887)|Glibenclamide(DB01016)	TTACCTTATAGGTGGGCCTCT	0.378									Cystic_Fibrosis				16	44					0	0	1	0	0
CFTR	1080	broad.mit.edu	37	7	117282638	117282638	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:117282638G>A	uc003vjd.2	+	23	3996	c.3864G>A	c.(3862-3864)GTG>GTA	p.V1288V	CFTR_uc011knq.1_Silent_p.V694V	NM_000492	NP_000483	P13569	CFTR_HUMAN	cystic fibrosis transmembrane conductance	1288	Cytoplasmic (Potential).|ABC transporter 2.				respiratory gaseous exchange	apical plasma membrane|basolateral plasma membrane|chloride channel complex|early endosome membrane	ATP binding|ATP-binding and phosphorylation-dependent chloride channel activity|channel-conductance-controlling ATPase activity|chloride channel regulator activity|enzyme binding|PDZ domain binding			central_nervous_system(2)|skin(2)|ovary(1)	5	Lung NSC(10;0.00148)|all_lung(10;0.00171)		STAD - Stomach adenocarcinoma(10;0.000534)		Bumetanide(DB00887)|Glibenclamide(DB01016)	CCTTTGGAGTGATACCACAGG	0.373									Cystic_Fibrosis				5	13					0	0	1	0	0
CTTNBP2	83992	broad.mit.edu	37	7	117424495	117424495	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:117424495G>A	uc003vjf.2	-	5	2174	c.2082C>T	c.(2080-2082)TCC>TCT	p.S694S		NM_033427	NP_219499	Q8WZ74	CTTB2_HUMAN	cortactin binding protein 2	694										ovary(4)|central_nervous_system(1)	5	Lung NSC(10;0.0018)|all_lung(10;0.002)			LUSC - Lung squamous cell carcinoma(290;0.133)		AAGGGGTTAGGGAGGGTGACC	0.507													24	76					0	0	1	0	0
WNT16	51384	broad.mit.edu	37	7	120965493	120965493	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:120965493G>A	uc003vjv.2	+	1	73	c.24G>A	c.(22-24)AGG>AGA	p.R8R		NM_016087	NP_057171	Q9UBV4	WNT16_HUMAN	wingless-type MMTV integration site family,	Error:Variant_position_missing_in_Q9UBV4_after_alignment					anterior/posterior pattern formation|axis specification|axonogenesis|canonical Wnt receptor signaling pathway|keratinocyte differentiation|keratinocyte proliferation|negative regulation of cell death|optic cup formation involved in camera-type eye development|oxidative stress-induced premature senescence|positive regulation of gene expression|positive regulation of JNK cascade|positive regulation of phosphatidylinositol 3-kinase cascade|replicative senescence|Wnt receptor signaling pathway, calcium modulating pathway	cytoplasm|extracellular space|plasma membrane|proteinaceous extracellular matrix	frizzled binding|signal transducer activity			lung(2)|ovary(2)|large_intestine(1)	5	all_neural(327;0.117)					CTTGCCTCAGGGAGACCCTCT	0.383													16	96					0	0	1	0	0
FLNC	2318	broad.mit.edu	37	7	128486460	128486460	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:128486460G>A	uc003vnz.3	+	23	4279	c.4070G>A	c.(4069-4071)GGG>GAG	p.G1357E	FLNC_uc003voa.3_Missense_Mutation_p.G1357E	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	1357	Filamin 12.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						CGAGCCTTCGGGCCAGGCCTG	0.612													13	34					0	0	1	0	0
FAM40B	57464	broad.mit.edu	37	7	129107204	129107204	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:129107204C>T	uc011koy.1	+	17	1830	c.1790C>T	c.(1789-1791)TCG>TTG	p.S597L	FAM40B_uc003vow.2_Missense_Mutation_p.S597L|FAM40B_uc011koz.1_Missense_Mutation_p.S89L	NM_020704	NP_065755	Q9ULQ0	FA40B_HUMAN	hypothetical protein LOC57464 isoform a	597											0						GAATATGTATCGCAACATTTG	0.353													9	31					0	0	1	0	0
MKLN1	4289	broad.mit.edu	37	7	131155681	131155681	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:131155681C>T	uc011kpm.1	+	16	2073	c.2009C>T	c.(2008-2010)TCA>TTA	p.S670L	MKLN1_uc011kpl.1_Missense_Mutation_p.S647L|MKLN1_uc010lmh.2_Missense_Mutation_p.S670L|MKLN1_uc003vqs.2_Missense_Mutation_p.S463L|MKLN1_uc003vqu.2_Missense_Mutation_p.S160L|MKLN1_uc003vqv.1_RNA	NM_013255	NP_037387	Q9UL63	MKLN1_HUMAN	muskelin 1, intracellular mediator containing	670					signal transduction	cytoplasm	protein binding			breast(1)	1	Melanoma(18;0.162)					GTGGATCATTCAGACCCAGAA	0.318													15	30					0	0	1	0	0
LRGUK	136332	broad.mit.edu	37	7	133848262	133848262	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:133848262C>T	uc003vrm.1	+	7	925	c.909C>T	c.(907-909)CTC>CTT	p.L303L		NM_144648	NP_653249	Q96M69	LRGUK_HUMAN	leucine-rich repeats and guanylate kinase domain	303	LRR 9.						ATP binding|kinase activity			lung(2)|skin(2)|kidney(1)	5						ATCATGACCTCCTGGAAGTGA	0.448													18	16					0	0	1	0	0
LRGUK	136332	broad.mit.edu	37	7	133943020	133943020	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:133943020C>T	uc003vrm.1	+	19	2226	c.2210C>T	c.(2209-2211)TCC>TTC	p.S737F		NM_144648	NP_653249	Q96M69	LRGUK_HUMAN	leucine-rich repeats and guanylate kinase domain	737							ATP binding|kinase activity			lung(2)|skin(2)|kidney(1)	5						GGGAAGGATTCCTTGGTTTCC	0.433													10	65					0	0	1	0	0
NUP205	23165	broad.mit.edu	37	7	135315146	135315146	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:135315146C>T	uc003vsw.2	+	35	5018	c.4987C>T	c.(4987-4989)CAG>TAG	p.Q1663*	NUP205_uc003vsx.2_RNA	NM_015135	NP_055950	Q92621	NU205_HUMAN	nucleoporin 205kDa	1663					carbohydrate metabolic process|glucose transport|mRNA transport|protein import into nucleus, docking|regulation of glucose transport|transmembrane transport|viral reproduction	nuclear pore	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6						TCTGCGCTGTCAGGATGTTAG	0.388													27	38					0	0	1	0	0
CHRM2	1129	broad.mit.edu	37	7	136699839	136699839	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:136699839C>T	uc003vtf.1	+	4	850	c.227C>T	c.(226-228)TCC>TTC	p.S76F	CHRM2_uc003vtg.1_Missense_Mutation_p.S76F|CHRM2_uc003vtj.1_Missense_Mutation_p.S76F|CHRM2_uc003vtk.1_Missense_Mutation_p.S76F|CHRM2_uc003vtl.1_Missense_Mutation_p.S76F|CHRM2_uc003vtm.1_Missense_Mutation_p.S76F|CHRM2_uc003vti.1_Missense_Mutation_p.S76F|CHRM2_uc003vto.1_Missense_Mutation_p.S76F|CHRM2_uc003vtn.1_Missense_Mutation_p.S76F|uc003vtp.1_Intron	NM_001006630	NP_001006631	P08172	ACM2_HUMAN	cholinergic receptor, muscarinic 2	76	Helical; Name=2; (By similarity).				activation of phospholipase C activity by muscarinic acetylcholine receptor signaling pathway|G-protein signaling, coupled to cAMP nucleotide second messenger|nervous system development|regulation of heart contraction|response to virus	cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity|protein binding			ovary(4)|central_nervous_system(1)	5					Anisotropine Methylbromide(DB00517)|Atropine(DB00572)|Benzquinamide(DB00767)|Carbachol(DB00411)|Cryptenamine(DB00785)|Cyclizine(DB01176)|Desipramine(DB01151)|Diphenidol(DB01231)|Doxacurium(DB01334)|Doxacurium chloride(DB01135)|Flavoxate(DB01148)|Gallamine Triethiodide(DB00483)|Homatropine Methylbromide(DB00725)|Hyoscyamine(DB00424)|Ipratropium(DB00332)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Metocurine(DB01336)|Mivacurium(DB01226)|Olanzapine(DB00334)|Oxybutynin(DB01062)|Oxyphencyclimine(DB00383)|Pilocarpine(DB01085)|Procyclidine(DB00387)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Rocuronium(DB00728)|Thiethylperazine(DB00372)|Tolterodine(DB01036)|Tridihexethyl(DB00505)|Triflupromazine(DB00508)	GGTGTTTTCTCCATGAACTTG	0.478													69	81					0	0	1	0	0
DGKI	9162	broad.mit.edu	37	7	137304591	137304591	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:137304591G>A	uc003vtt.2	-	8	973	c.972C>T	c.(970-972)ATC>ATT	p.I324I	DGKI_uc003vtu.2_Silent_p.I24I	NM_004717	NP_004708	O75912	DGKI_HUMAN	diacylglycerol kinase, iota	324					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	nucleus|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(1)|kidney(1)|skin(1)	3						TCACCTTAATGATCCAAGTGG	0.507													56	68					0	0	1	0	0
KIAA1549	57670	broad.mit.edu	37	7	138601950	138601950	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:138601950G>A	uc011kql.1	-	2	2471	c.2422C>T	c.(2422-2424)CTG>TTG	p.L808L	KIAA1549_uc003vuk.3_Silent_p.L758L|KIAA1549_uc011kqj.1_Silent_p.L808L	NM_020910	NP_065961	Q9HCM3	K1549_HUMAN	hypothetical protein LOC57670 isoform 1	808						integral to membrane			KIAA1549/BRAF(229)	central_nervous_system(229)|pancreas(1)	230						GGAGGTGTCAGAGTTGAGAAC	0.483			O	BRAF	pilocytic astrocytoma								17	21					0	0	1	0	0
ZC3HAV1	56829	broad.mit.edu	37	7	138732465	138732465	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:138732465G>A	uc003vun.2	-	13	2972	c.2584C>T	c.(2584-2586)CCA>TCA	p.P862S		NM_020119	NP_064504	Q7Z2W4	ZCCHV_HUMAN	zinc finger antiviral protein isoform 1	862	PARP catalytic.				response to virus	cytoplasm|nucleus	NAD+ ADP-ribosyltransferase activity|RNA binding|zinc ion binding			ovary(1)	1						TCGAACTGTGGAGGAGGGCTC	0.418													18	71					0	0	1	0	0
MGAM	8972	broad.mit.edu	37	7	141754619	141754619	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:141754619C>T	uc003vwy.2	+	27	3279	c.3225C>T	c.(3223-3225)TCC>TCT	p.S1075S		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1075	Glucoamylase.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	GCATGCCATCCAGCACCCCTG	0.443													37	69					0	0	1	0	0
MGAM	8972	broad.mit.edu	37	7	141764245	141764245	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:141764245C>T	uc003vwy.2	+	37	4461	c.4407C>T	c.(4405-4407)ATC>ATT	p.I1469I		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1469	Glucoamylase.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	GTCAGCAGATCCTCCCAGACG	0.582													3	10					0	0	1	0	0
PRSS1	5644	broad.mit.edu	37	7	142460392	142460392	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:142460392C>T	uc003wak.2	+	4	582	c.565C>T	c.(565-567)CTT>TTT	p.L189F	uc011krr.1_Intron|uc003vzp.2_Intron|uc011ksh.1_Intron|uc011ksi.1_Intron|uc003vzw.1_Intron|uc010loj.1_Intron|uc003wad.2_Intron|uc003wag.1_Intron|TRY6_uc011ksn.1_Intron|PRSS1_uc003wam.2_Missense_Mutation_p.L129F	NM_002769	NP_002760	P07477	TRY1_HUMAN	protease, serine, 1 preproprotein	189	Peptidase S1.				digestion|proteolysis	extracellular space	metal ion binding|protein binding|serine-type endopeptidase activity			large_intestine(1)|central_nervous_system(1)	2	Melanoma(164;0.047)	all_cancers(3;2.14e-49)|Acute lymphoblastic leukemia(3;7.3e-185)|all_hematologic(3;1.1e-165)	all cancers(2;0.000126)|Colorectal(2;0.000157)|Epithelial(2;0.000191)|COAD - Colon adenocarcinoma(2;0.00189)			TGTGGGCTTCCTTGAGGGAGG	0.537									Hereditary_Pancreatitis				17	93					0	0	1	0	0
KEL	3792	broad.mit.edu	37	7	142655503	142655503	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:142655503G>A	uc003wcb.2	-	5	623	c.413C>T	c.(412-414)TCC>TTC	p.S138F		NM_000420	NP_000411	P23276	KELL_HUMAN	Kell blood group, metallo-endopeptidase	138	Extracellular (Potential).				proteolysis|vasoconstriction	integral to membrane|plasma membrane	metal ion binding|metalloendopeptidase activity|protein binding			ovary(3)|central_nervous_system(1)	4	Melanoma(164;0.059)					TGGGTGCCAGGAATTCTGGAC	0.358													33	35					0	0	1	0	0
ZYX	7791	broad.mit.edu	37	7	143079411	143079411	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:143079411C>T	uc003wcw.2	+	3	434	c.279C>T	c.(277-279)TTC>TTT	p.F93F	ZYX_uc011ktd.1_5'UTR|ZYX_uc003wcx.2_Silent_p.F93F|ZYX_uc011kte.1_Silent_p.F93F|ZYX_uc011ktf.1_5'UTR	NM_001010972	NP_001010972	Q15942	ZYX_HUMAN	zyxin	93				F->A: Reduced interaction with ENAH and VASP.	cell adhesion|cell-cell signaling|interspecies interaction between organisms|signal transduction	cell-cell adherens junction|cytoplasm|focal adhesion|integral to plasma membrane|nucleus|stress fiber	protein binding|zinc ion binding				0	Melanoma(164;0.205)					GAGGTGCCTTCCCGCCGCCCC	0.677													16	19					0	0	1	0	0
OR2A5	393046	broad.mit.edu	37	7	143747630	143747630	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:143747630G>A	uc011ktw.1	+	1	136	c.136G>A	c.(136-138)GGG>AGG	p.G46R		NM_012365	NP_036497	Q96R48	OR2A5_HUMAN	olfactory receptor, family 2, subfamily A,	46	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3	Melanoma(164;0.0783)					GGCCATCCTGGGGCTCATCTG	0.517													35	39					0	0	1	0	0
TPK1	27010	broad.mit.edu	37	7	144380014	144380014	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:144380014C>T	uc003weq.2	-	4	276	c.173G>A	c.(172-174)GGA>GAA	p.G58E	TPK1_uc003weo.2_Missense_Mutation_p.E13K|TPK1_uc003wep.2_RNA|TPK1_uc003wer.2_Missense_Mutation_p.G58E|TPK1_uc003wes.2_RNA	NM_022445	NP_071890	Q9H3S4	TPK1_HUMAN	thiamin pyrophosphokinase 1 isoform a	58					thiamine diphosphate biosynthetic process	cytosol	ATP binding|kinase activity|thiamine diphosphokinase activity			ovary(2)	2					Thiamine(DB00152)	TTCTCTCTCTCCTTCGGTGAT	0.378													26	129					0	0	1	0	0
CNTNAP2	26047	broad.mit.edu	37	7	146536986	146536986	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:146536986G>A	uc003weu.1	+	3	908	c.392G>A	c.(391-393)GGG>GAG	p.G131E		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	131	F5/8 type C.|Extracellular (Potential).				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			CATCAAGATGGGAATATCTGG	0.413										HNSCC(39;0.1)			7	25					0	0	1	0	0
SSPO	23145	broad.mit.edu	37	7	149475059	149475059	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr7:149475059G>A	uc010lpk.2	+	6	760	c.760G>A	c.(760-762)GAG>AAG	p.E254K	SSPO_uc010lpl.1_Intron	NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	254	VWFD 1.				cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			GGGACCCGAGGAGGTGCTGAT	0.617													12	28					0	0	1	0	0
FBXO25	26260	broad.mit.edu	37	8	385683	385683	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:385683C>T	uc003wox.2	+	5	623	c.357C>T	c.(355-357)ATC>ATT	p.I119I	FBXO25_uc003woy.2_Silent_p.I119I|FBXO25_uc003woz.2_Silent_p.I52I|FBXO25_uc003wpa.2_5'UTR	NM_183421	NP_904357	Q8TCJ0	FBX25_HUMAN	F-box only protein 25 isoform 1	119						nucleus|SCF ubiquitin ligase complex	actin binding|ubiquitin-protein ligase activity			lung(1)	1		Ovarian(12;0.00965)|Colorectal(14;0.0815)|Myeloproliferative disorder(644;0.116)|all_neural(12;0.122)		Epithelial(5;3.14e-14)|OV - Ovarian serous cystadenocarcinoma(5;1.56e-07)|BRCA - Breast invasive adenocarcinoma(11;1.88e-06)		TTCAAGATATCCGAAGGTTCA	0.358													13	33					0	0	1	0	0
ARHGEF10	9639	broad.mit.edu	37	8	1874623	1874623	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:1874623C>T	uc003wpr.2	+	23	2869	c.2691C>T	c.(2689-2691)TTC>TTT	p.F897F	ARHGEF10_uc003wps.2_Silent_p.F859F|ARHGEF10_uc003wpv.2_Silent_p.F629F|ARHGEF10_uc010lre.2_Intron	NM_014629	NP_055444	O15013	ARHGA_HUMAN	Rho guanine nucleotide exchange factor 10	922					centrosome duplication|myelination in peripheral nervous system|positive regulation of GTP catabolic process|positive regulation of stress fiber assembly|regulation of Rho protein signal transduction|spindle assembly involved in mitosis	centrosome|cytosol|soluble fraction	kinesin binding|Rho guanyl-nucleotide exchange factor activity			large_intestine(1)	1		Colorectal(14;3.46e-05)|Renal(68;0.000518)|Ovarian(12;0.00409)|Myeloproliferative disorder(644;0.0255)|Hepatocellular(245;0.0834)		COAD - Colon adenocarcinoma(149;1.62e-05)|BRCA - Breast invasive adenocarcinoma(11;1.68e-05)|KIRC - Kidney renal clear cell carcinoma(542;0.00361)|READ - Rectum adenocarcinoma(644;0.0718)		CACATGGTTTCCTGTGGGTAA	0.393													29	34					0	0	1	0	0
CSMD1	64478	broad.mit.edu	37	8	2806844	2806844	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:2806844C>T	uc011kwk.1	-	68	10772	c.10382G>A	c.(10381-10383)GGA>GAA	p.G3461E	CSMD1_uc011kwj.1_Missense_Mutation_p.G2775E|CSMD1_uc010lrg.2_Missense_Mutation_p.G1352E	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	3461	Extracellular (Potential).					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		CTTAAATTTTCCAAAGTCTTT	0.328													18	35					0	0	1	0	0
CSMD1	64478	broad.mit.edu	37	8	3216752	3216752	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:3216752G>A	uc011kwk.1	-	21	3619	c.3229C>T	c.(3229-3231)CGT>TGT	p.R1077C	CSMD1_uc011kwj.1_Missense_Mutation_p.R469C|CSMD1_uc003wqe.2_Missense_Mutation_p.R233C	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	1077	Sushi 6.|Extracellular (Potential).					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		CCTTCTAAACGATATCCCAGG	0.557													47	74					0	0	1	0	0
CSMD1	64478	broad.mit.edu	37	8	3889600	3889600	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:3889600C>T	uc011kwk.1	-	4	827	c.437G>A	c.(436-438)GGA>GAA	p.G146E		NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	146	Extracellular (Potential).|Sushi 1.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		TCCAGGATTTCCACAAGTGTG	0.413													23	43					0	0	1	0	0
C8orf74	203076	broad.mit.edu	37	8	10555209	10555209	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:10555209C>T	uc003wtd.1	+	3	371	c.342C>T	c.(340-342)TTC>TTT	p.F114F	C8orf74_uc003wte.1_RNA	NM_001040032	NP_001035121	Q6P047	CH074_HUMAN	hypothetical protein LOC203076	114											0				COAD - Colon adenocarcinoma(149;0.0811)		GTGACTACTTCCACCACACCT	0.577													73	134					0	0	1	0	0
DEFB134	613211	broad.mit.edu	37	8	11853717	11853717	+	Missense_Mutation	SNP	T	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:11853717T>A	uc011kxn.1	-	1	44	c.44A>T	c.(43-45)GAT>GTT	p.D15V		NM_001033019	NP_001028191	Q4QY38	DB134_HUMAN	beta-defensin 134 precursor	15					defense response to bacterium	extracellular region					0			STAD - Stomach adenocarcinoma(15;0.033)	COAD - Colon adenocarcinoma(149;0.159)		CAGCACTGGATCCCAAAGGAA	0.478													45	78					0	0	1	0	0
USP17L2	377630	broad.mit.edu	37	8	11994955	11994955	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:11994955A>G	uc003wvc.1	-	1	1315	c.1315T>C	c.(1315-1317)TTC>CTC	p.F439L	FAM66D_uc011kxp.1_Intron|FAM66D_uc011kxo.1_Intron	NM_201402	NP_958804	Q6R6M4	U17L2_HUMAN	deubiquitinating enzyme 3	439					apoptosis|cell cycle|G2/M transition checkpoint|mitotic cell cycle G1/S transition checkpoint|protein deubiquitination|ubiquitin-dependent protein catabolic process	nucleus	ubiquitin thiolesterase activity|ubiquitin-specific protease activity			skin(2)|upper_aerodigestive_tract(1)	3						TCTTGGGGGAATTTCCAGTGG	0.512													19	122					0	0	1	0	0
USP17L2	377630	broad.mit.edu	37	8	11994994	11994994	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:11994994C>T	uc003wvc.1	-	1	1276	c.1276G>A	c.(1276-1278)GAA>AAA	p.E426K	FAM66D_uc011kxp.1_Intron|FAM66D_uc011kxo.1_Intron	NM_201402	NP_958804	Q6R6M4	U17L2_HUMAN	deubiquitinating enzyme 3	426					apoptosis|cell cycle|G2/M transition checkpoint|mitotic cell cycle G1/S transition checkpoint|protein deubiquitination|ubiquitin-dependent protein catabolic process	nucleus	ubiquitin thiolesterase activity|ubiquitin-specific protease activity			skin(2)|upper_aerodigestive_tract(1)	3						GTGGCTCTTTCCACCAAGCGC	0.557													28	127					0	0	1	0	0
TUSC3	7991	broad.mit.edu	37	8	15605946	15605946	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:15605946C>T	uc003wwt.2	+	9	1210	c.1000C>T	c.(1000-1002)CGT>TGT	p.R334C	TUSC3_uc003wwu.2_Missense_Mutation_p.R334C|TUSC3_uc003wwv.2_Missense_Mutation_p.R334C|TUSC3_uc003www.2_Intron|TUSC3_uc003wwx.2_RNA|TUSC3_uc003wwy.2_Intron	NM_006765	NP_006756	Q13454	TUSC3_HUMAN	tumor suppressor candidate 3 isoform a	334					cell redox homeostasis|post-translational protein modification|protein N-linked glycosylation via asparagine	integral to membrane|oligosaccharyltransferase complex				ovary(2)|central_nervous_system(1)	3				Colorectal(111;0.113)		TTCAATATTTCGTTCCAAGTA	0.318													55	109					0	0	1	0	0
SLC7A2	6542	broad.mit.edu	37	8	17400855	17400855	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:17400855C>T	uc011kyc.1	+	2	176	c.7C>T	c.(7-9)CCT>TCT	p.P3S	SLC7A2_uc011kyd.1_Missense_Mutation_p.P43S|SLC7A2_uc011kye.1_Missense_Mutation_p.P43S|SLC7A2_uc011kyf.1_Missense_Mutation_p.P3S	NM_001008539	NP_001008539	P52569	CTR2_HUMAN	solute carrier family 7, member 2 isoform 2	3	Cytoplasmic (Potential).				cellular amino acid metabolic process|ion transport	cytoplasm|integral to plasma membrane|membrane fraction	basic amino acid transmembrane transporter activity			ovary(2)|skin(1)	3				Colorectal(111;0.0577)|COAD - Colon adenocarcinoma(73;0.216)	L-Lysine(DB00123)|L-Ornithine(DB00129)	CAGAATGATTCCTTGCAGAGC	0.522													25	39					0	0	1	0	0
PIWIL2	55124	broad.mit.edu	37	8	22138965	22138965	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:22138965G>T	uc003xbn.2	+	4	510	c.362G>T	c.(361-363)TGG>TTG	p.W121L	PIWIL2_uc011kzf.1_Missense_Mutation_p.W121L|PIWIL2_uc010ltv.2_Missense_Mutation_p.W121L	NM_018068	NP_060538	Q8TC59	PIWL2_HUMAN	piwi-like 2	121					DNA methylation involved in gamete generation|gene silencing by RNA|germ-line stem cell maintenance|multicellular organismal development|oogenesis|piRNA metabolic process|positive regulation of translation|RNA 5'-end processing|spermatogenesis	chromatoid body|pi-body	piRNA binding			skin(1)	1				Colorectal(74;0.018)|COAD - Colon adenocarcinoma(73;0.0707)		CCCACTTTTTGGGATCCAAAA	0.507													32	115					2.46105e-21	2.50105e-21	1	1	0
PIWIL2	55124	broad.mit.edu	37	8	22212892	22212892	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:22212892G>A	uc003xbn.2	+	23	2944	c.2796G>A	c.(2794-2796)TGG>TGA	p.W932*	PIWIL2_uc011kzf.1_Nonsense_Mutation_p.W896*|PIWIL2_uc010ltv.2_Nonsense_Mutation_p.W932*|PIWIL2_uc003xbo.2_Nonsense_Mutation_p.W86*	NM_018068	NP_060538	Q8TC59	PIWL2_HUMAN	piwi-like 2	932	Piwi.				DNA methylation involved in gamete generation|gene silencing by RNA|germ-line stem cell maintenance|multicellular organismal development|oogenesis|piRNA metabolic process|positive regulation of translation|RNA 5'-end processing|spermatogenesis	chromatoid body|pi-body	piRNA binding			skin(1)	1				Colorectal(74;0.018)|COAD - Colon adenocarcinoma(73;0.0707)		ACATGTACTGGAATTGGCCTG	0.468													26	44					0	0	1	0	0
Unknown	0	broad.mit.edu	37	8	22938510	22938510	+	RNA	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:22938510G>A	uc003xcw.1	+	2		c.205G>A								Homo sapiens cDNA FLJ14233 fis, clone NT2RP4000049.																		ACAGGCAAAAGCTGAAAGGGT	0.532													11	39					0	0	1	0	0
ENTPD4	9583	broad.mit.edu	37	8	23306327	23306327	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:23306327G>A	uc003xdl.2	-	3	298	c.134C>T	c.(133-135)TCA>TTA	p.S45L	ENTPD4_uc011kzu.1_Missense_Mutation_p.S45L|ENTPD4_uc003xdm.2_Missense_Mutation_p.S45L|ENTPD4_uc011kzv.1_Missense_Mutation_p.S45L|ENTPD4_uc011kzw.1_Missense_Mutation_p.S11L	NM_004901	NP_004892	Q9Y227	ENTP4_HUMAN	ectonucleoside triphosphate diphosphohydrolase 4	45	Helical; (Potential).				UDP catabolic process	autophagic vacuole membrane|cytoplasmic vesicle|integral to Golgi membrane	uridine-diphosphatase activity			ovary(1)|kidney(1)	2		Prostate(55;0.114)		Colorectal(74;0.0161)|COAD - Colon adenocarcinoma(73;0.0649)		ATATAAAAGTGAAACAGCAGC	0.373													43	56					0	0	1	0	0
NKX3-1	4824	broad.mit.edu	37	8	23538897	23538897	+	Missense_Mutation	SNP	C	T	T	rs150251660		TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:23538897C>T	uc011kzx.1	-	2	590	c.542G>A	c.(541-543)CGA>CAA	p.R181Q	NKX3-1_uc003xdv.1_Intron	NM_006167	NP_006158	Q99801	NKX31_HUMAN	NK3 homeobox 1	181	Homeobox.				negative regulation of estrogen receptor binding|negative regulation of transcription, DNA-dependent|positive regulation of cell division|positive regulation of mitotic cell cycle|positive regulation of transcription from RNA polymerase II promoter	nucleus	estrogen receptor activity|estrogen receptor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region sequence-specific DNA binding				0		Prostate(55;0.114)		Colorectal(74;0.0146)|COAD - Colon adenocarcinoma(73;0.061)|BRCA - Breast invasive adenocarcinoma(99;0.0708)		GAGCTGCTTTCGCTTAGTCTT	0.582													60	127					0	0	1	0	0
NEFM	4741	broad.mit.edu	37	8	24771991	24771991	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:24771991G>A	uc003xed.3	+	1	718	c.685G>A	c.(685-687)GAT>AAT	p.D229N	NEFM_uc011lac.1_Missense_Mutation_p.D229N|NEFM_uc010lue.2_5'Flank|uc010luc.1_Missense_Mutation_p.S26F	NM_005382	NP_005373	P07197	NFM_HUMAN	neurofilament, medium polypeptide 150kDa isoform	229	Rod.|Coil 1B.					neurofilament	protein binding|structural constituent of cytoskeleton			breast(1)	1		Prostate(55;0.157)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0197)|Epithelial(17;2.44e-10)|Colorectal(74;0.0108)|COAD - Colon adenocarcinoma(73;0.0375)		GTCGCTGCAGGATGAGGTGGC	0.642													13	23					0	0	1	0	0
DOCK5	80005	broad.mit.edu	37	8	25178514	25178514	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:25178514G>A	uc003xeg.2	+	16	1698	c.1561G>A	c.(1561-1563)GAA>AAA	p.E521K	DOCK5_uc010luf.1_RNA|DOCK5_uc003xeh.1_Missense_Mutation_p.E235K|DOCK5_uc003xei.2_Missense_Mutation_p.E91K	NM_024940	NP_079216	Q9H7D0	DOCK5_HUMAN	dedicator of cytokinesis 5	521	DHR-1.					cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			ovary(3)	3		all_cancers(63;0.0361)|Ovarian(32;0.000711)|all_epithelial(46;0.0153)|Hepatocellular(4;0.115)|Prostate(55;0.13)|Breast(100;0.143)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0267)|Epithelial(17;1.07e-11)|Colorectal(74;0.0276)|COAD - Colon adenocarcinoma(73;0.0828)		TGCTATAGAAGAAGTCACACG	0.338													12	24					0	0	1	0	0
EBF2	64641	broad.mit.edu	37	8	25718677	25718677	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:25718677G>A	uc003xes.1	-	13	1247	c.1230C>T	c.(1228-1230)AGC>AGT	p.S410S	PPP2R2A_uc003xek.2_Intron|EBF2_uc010lug.1_RNA	NM_022659	NP_073150	Q9HAK2	COE2_HUMAN	early B-cell factor 2	410					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|metal ion binding			ovary(3)|skin(1)	4		all_cancers(63;0.0989)|Ovarian(32;2.74e-05)|all_epithelial(46;0.0608)|Prostate(55;0.0845)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0277)|Epithelial(17;3.29e-10)|Colorectal(74;0.00383)|COAD - Colon adenocarcinoma(73;0.00738)		CTGGAAGCTGGCTGGGATTCC	0.527													49	86					0	0	1	0	0
ESCO2	157570	broad.mit.edu	37	8	27634475	27634475	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:27634475C>T	uc003xgg.2	+	3	733	c.650C>T	c.(649-651)TCT>TTT	p.S217F	ESCO2_uc010luy.1_RNA|ESCO2_uc003xgh.2_Missense_Mutation_p.S217F	NM_001017420	NP_001017420	Q56NI9	ESCO2_HUMAN	establishment of cohesion 1 homolog 2	217					cell cycle|post-translational protein acetylation|regulation of DNA replication	chromatin|nucleus	acyltransferase activity|metal ion binding			central_nervous_system(1)	1		Ovarian(32;0.000953)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0204)|KIRC - Kidney renal clear cell carcinoma(542;0.0955)|Kidney(114;0.115)|Colorectal(74;0.132)		AGAAAAAAATCTTCTCTTAGA	0.408									SC_Phocomelia_syndrome				10	37					0	0	1	0	0
FZD3	7976	broad.mit.edu	37	8	28420432	28420432	+	Silent	SNP	T	C	C			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:28420432T>C	uc003xgx.2	+	8	2383	c.1905T>C	c.(1903-1905)CAT>CAC	p.H635H	FZD3_uc010lvb.2_Silent_p.H635H	NM_017412	NP_059108	Q9NPG1	FZD3_HUMAN	frizzled 3 precursor	635	Cytoplasmic (Potential).				canonical Wnt receptor signaling pathway|cell proliferation in midbrain|commissural neuron axon guidance|establishment of planar polarity|facial nucleus development|G-protein signaling, coupled to cGMP nucleotide second messenger|gonad development|inner ear morphogenesis|neural tube closure|vasculature development	apical part of cell|axon|cytoplasm|dendrite|integral to membrane|neuron projection membrane|neuronal cell body|presynaptic active zone	G-protein coupled receptor activity|PDZ domain binding|Wnt-protein binding			ovary(1)|central_nervous_system(1)	2		Ovarian(32;2.06e-05)		KIRC - Kidney renal clear cell carcinoma(542;0.109)|Kidney(114;0.13)|Colorectal(74;0.23)		AGTCACGACATAGCAGCATCA	0.453													14	39					0	0	1	0	0
EXTL3	2137	broad.mit.edu	37	8	28575207	28575207	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:28575207C>T	uc003xgz.1	+	3	2224	c.1631C>T	c.(1630-1632)CCC>CTC	p.P544L		NM_001440	NP_001431	O43909	EXTL3_HUMAN	exostoses-like 3	544	Lumenal (Potential).					integral to membrane|intrinsic to endoplasmic reticulum membrane	glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity|metal ion binding|protein binding			skin(2)	2		Ovarian(32;0.069)		KIRC - Kidney renal clear cell carcinoma(542;0.107)|Kidney(114;0.129)|Colorectal(74;0.228)		CCAGCCGCTCCCATCCGGGAA	0.587													20	47					0	0	1	0	0
TEX15	56154	broad.mit.edu	37	8	30690836	30690836	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:30690836G>A	uc003xil.2	-	4	8336	c.8336C>T	c.(8335-8337)CCA>CTA	p.P2779L		NM_031271	NP_112561	Q9BXT5	TEX15_HUMAN	testis expressed 15	2779										ovary(3)|upper_aerodigestive_tract(2)|skin(2)	7				KIRC - Kidney renal clear cell carcinoma(542;0.0918)|Kidney(114;0.111)		TTGGTGCCATGGAGCTGGAAG	0.234													7	15					0	0	1	0	0
TEX15	56154	broad.mit.edu	37	8	30705003	30705003	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:30705003C>T	uc003xil.2	-	1	1531	c.1531G>A	c.(1531-1533)GAA>AAA	p.E511K		NM_031271	NP_112561	Q9BXT5	TEX15_HUMAN	testis expressed 15	511										ovary(3)|upper_aerodigestive_tract(2)|skin(2)	7				KIRC - Kidney renal clear cell carcinoma(542;0.0918)|Kidney(114;0.111)		CTGAAATTTTCGTTTGTATGA	0.303													34	63					0	0	1	0	0
UNC5D	137970	broad.mit.edu	37	8	35608171	35608171	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:35608171C>T	uc003xjr.1	+	13	2335	c.2007C>T	c.(2005-2007)CTC>CTT	p.L669L	UNC5D_uc003xjs.1_Silent_p.L664L|UNC5D_uc003xju.1_Silent_p.L245L	NM_080872	NP_543148	Q6UXZ4	UNC5D_HUMAN	unc-5 homolog D precursor	669	Cytoplasmic (Potential).				apoptosis|axon guidance	integral to membrane	receptor activity			upper_aerodigestive_tract(2)|ovary(2)|pancreas(1)|skin(1)	6				READ - Rectum adenocarcinoma(1;1.31e-05)|Colorectal(1;0.000723)		GTCATGTGCTCCTGGACAGCT	0.493													44	94					0	0	1	0	0
PROSC	11212	broad.mit.edu	37	8	37633525	37633525	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:37633525C>T	uc003xkh.2	+	7	764	c.687C>T	c.(685-687)TTC>TTT	p.F229F		NM_007198	NP_009129	O94903	PROSC_HUMAN	proline synthetase co-transcribed homolog	229							pyridoxal phosphate binding			central_nervous_system(1)	1		Lung NSC(58;0.174)	BRCA - Breast invasive adenocarcinoma(5;6.14e-24)|LUSC - Lung squamous cell carcinoma(8;3.5e-10)		L-Proline(DB00172)|Pyridoxal Phosphate(DB00114)	CCGCGGATTTCCAGCATGCGG	0.572													25	84					0	0	1	0	0
RAB11FIP1	80223	broad.mit.edu	37	8	37730506	37730506	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:37730506G>A	uc003xkm.1	-	4	1858	c.1814C>T	c.(1813-1815)CCC>CTC	p.P605L	RAB11FIP1_uc010lvz.1_Intron|RAB11FIP1_uc003xkn.1_Intron|RAB11FIP1_uc003xkl.1_5'UTR|RAB11FIP1_uc003xko.1_5'UTR|RAB11FIP1_uc003xkp.1_Intron	NM_001002814	NP_001002814	Q6WKZ4	RFIP1_HUMAN	RAB11 family interacting protein 1 isoform 3	605	Ser-rich.				protein transport	centrosome|phagocytic vesicle membrane|recycling endosome	protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Lung NSC(58;0.118)|all_lung(54;0.195)	LUSC - Lung squamous cell carcinoma(8;3.62e-11)			TGTGGAAATGGGAGCTGCTAT	0.547													25	67					0	0	1	0	0
TACC1	6867	broad.mit.edu	37	8	38678044	38678044	+	Missense_Mutation	SNP	C	T	T	rs140200190		TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:38678044C>T	uc010lwp.2	+	3	1661	c.1282C>T	c.(1282-1284)CCC>TCC	p.P428S	TACC1_uc011lby.1_Missense_Mutation_p.P233S|TACC1_uc003xma.2_Intron|TACC1_uc003xlz.2_Missense_Mutation_p.P233S|TACC1_uc003xmc.3_Missense_Mutation_p.P233S|TACC1_uc011lbz.1_Missense_Mutation_p.P444S|TACC1_uc003xmb.3_Missense_Mutation_p.P383S|TACC1_uc003xme.1_Intron|TACC1_uc003xmd.1_Intron|TACC1_uc010lwo.1_Intron|TACC1_uc003xmf.3_Intron|TACC1_uc011lca.1_Missense_Mutation_p.P428S|TACC1_uc011lcb.1_Missense_Mutation_p.P233S|TACC1_uc011lcc.1_Missense_Mutation_p.P233S|TACC1_uc011lcd.1_RNA|TACC1_uc003xmh.3_Missense_Mutation_p.P233S|TACC1_uc010lwq.2_Missense_Mutation_p.P233S	NM_006283	NP_006274	O75410	TACC1_HUMAN	transforming, acidic coiled-coil containing	428	SPAZ 2.			P -> H (in Ref. 6; AAH41391).	cell cycle|cell division	intermediate filament cytoskeleton|microtubule organizing center|nucleus	protein binding			ovary(1)	1		all_lung(54;0.00292)|Lung NSC(58;0.0115)|Hepatocellular(245;0.065)	LUSC - Lung squamous cell carcinoma(45;1.7e-09)|COAD - Colon adenocarcinoma(9;0.235)			ATCCATGGATCCCTTTAAACC	0.478													81	173					0	0	1	0	0
IDO1	3620	broad.mit.edu	37	8	39785559	39785559	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:39785559T>C	uc003xnm.2	+	10	1181	c.1067T>C	c.(1066-1068)ATT>ACT	p.I356T	IDO1_uc003xnn.2_RNA	NM_002164	NP_002155	P14902	I23O1_HUMAN	indoleamine 2,3-dioxygenase 1	356					female pregnancy|tryptophan catabolic process	cytosol	electron carrier activity|heme binding|indoleamine 2,3-dioxygenase activity|tryptophan 2,3-dioxygenase activity			central_nervous_system(2)	2					L-Tryptophan(DB00150)	TACATCCTGATTCCTGCAAGC	0.488													5	10					0	0	1	0	0
IDO2	169355	broad.mit.edu	37	8	39792728	39792728	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:39792728C>T	uc010lwy.1	+	1	255	c.13C>T	c.(13-15)CAT>TAT	p.H5Y	IDO2_uc003xno.1_RNA	NM_194294	NP_919270	Q6ZQW0	I23O2_HUMAN	indoleamine-pyrrole 2,3 dioxygenase-like 1	Error:Variant_position_missing_in_Q6ZQW0_after_alignment					tryptophan catabolic process to kynurenine	cytosol	heme binding|indoleamine 2,3-dioxygenase activity|tryptophan 2,3-dioxygenase activity			ovary(2)	2						GTTGCATTTTCATTATTATGG	0.383													49	103					0	0	1	0	0
C8orf4	56892	broad.mit.edu	37	8	40011117	40011117	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:40011117C>T	uc003xnq.1	+	1	129	c.66C>T	c.(64-66)ATC>ATT	p.I22I		NM_020130	NP_064515	Q9NR00	CH004_HUMAN	thyroid cancer-1	22					apoptosis					ovary(1)	1	Ovarian(28;0.0173)	all_cancers(7;5.34e-21)|all_epithelial(6;1.04e-14)|Lung NSC(58;9.35e-06)|all_lung(54;1.39e-05)|Hepatocellular(245;0.00745)|Breast(189;0.0334)|Colorectal(162;0.0815)|Myeloproliferative disorder(644;0.116)|Esophageal squamous(32;0.141)	LUSC - Lung squamous cell carcinoma(45;0.000149)	KIRC - Kidney renal clear cell carcinoma(67;0.0923)|Kidney(114;0.111)		GCCCATCCATCCATGGCTACC	0.517													24	36					0	0	1	0	0
ANK1	286	broad.mit.edu	37	8	41547832	41547832	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:41547832G>A	uc003xok.2	-	33	4101	c.4017C>T	c.(4015-4017)TCC>TCT	p.S1339S	NKX6-3_uc010lxa.1_Intron|ANK1_uc003xoh.2_Silent_p.S655S|ANK1_uc003xoi.2_Silent_p.S1339S|ANK1_uc003xoj.2_Silent_p.S1339S|ANK1_uc003xol.2_Silent_p.S1339S|ANK1_uc003xom.2_Silent_p.S1380S	NM_020476	NP_065209	P16157	ANK1_HUMAN	ankyrin 1 isoform 1	1339					axon guidance|cytoskeleton organization|exocytosis|maintenance of epithelial cell apical/basal polarity|signal transduction	basolateral plasma membrane|cytosol|sarcomere|sarcoplasmic reticulum|spectrin-associated cytoskeleton	cytoskeletal adaptor activity|enzyme binding|protein binding|spectrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(3)|lung(2)|breast(1)	9	Ovarian(28;0.00541)|Colorectal(14;0.0398)|Lung SC(25;0.211)	all_lung(54;0.000626)|Lung NSC(58;0.00245)|Esophageal squamous(32;0.0559)|Hepatocellular(245;0.0663)|Renal(179;0.188)	OV - Ovarian serous cystadenocarcinoma(14;0.000984)|Lung(22;0.00108)|Colorectal(10;0.00245)|LUSC - Lung squamous cell carcinoma(45;0.00392)|COAD - Colon adenocarcinoma(11;0.0264)			GAAACGACAGGGACCCTCCCG	0.587													28	51					0	0	1	0	0
CHRNB3	1142	broad.mit.edu	37	8	42586818	42586818	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:42586818G>A	uc003xpi.1	+	5	496	c.368G>A	c.(367-369)GGC>GAC	p.G123D		NM_000749	NP_000740	Q05901	ACHB3_HUMAN	cholinergic receptor, nicotinic, beta	123	Extracellular (Potential).				synaptic transmission, cholinergic	cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	nicotinic acetylcholine-activated cation-selective channel activity|receptor activity			ovary(1)	1	all_lung(13;5.7e-12)|Lung NSC(13;1.6e-10)|Ovarian(28;0.00579)|Prostate(17;0.0119)|Lung SC(25;0.184)	all_lung(54;0.00026)|Lung NSC(58;0.000992)|Hepatocellular(245;0.0524)|Renal(179;0.0822)|Esophageal squamous(32;0.0954)	Lung(22;0.0199)|LUSC - Lung squamous cell carcinoma(45;0.0869)			AGTGCTGACGGCCGCTTCGAA	0.493													20	38					0	0	1	0	0
CHRNB3	1142	broad.mit.edu	37	8	42586860	42586860	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:42586860C>T	uc003xpi.1	+	5	538	c.410C>T	c.(409-411)TCA>TTA	p.S137L		NM_000749	NP_000740	Q05901	ACHB3_HUMAN	cholinergic receptor, nicotinic, beta	137	Extracellular (Potential).				synaptic transmission, cholinergic	cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	nicotinic acetylcholine-activated cation-selective channel activity|receptor activity			ovary(1)	1	all_lung(13;5.7e-12)|Lung NSC(13;1.6e-10)|Ovarian(28;0.00579)|Prostate(17;0.0119)|Lung SC(25;0.184)	all_lung(54;0.00026)|Lung NSC(58;0.000992)|Hepatocellular(245;0.0524)|Renal(179;0.0822)|Esophageal squamous(32;0.0954)	Lung(22;0.0199)|LUSC - Lung squamous cell carcinoma(45;0.0869)			ATCGTGAAATCAAACGGAACT	0.542													21	33					0	0	1	0	0
CHRNB3	1142	broad.mit.edu	37	8	42587197	42587197	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:42587197C>T	uc003xpi.1	+	5	875	c.747C>T	c.(745-747)TTC>TTT	p.F249F		NM_000749	NP_000740	Q05901	ACHB3_HUMAN	cholinergic receptor, nicotinic, beta	249	Helical; (Potential).				synaptic transmission, cholinergic	cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	nicotinic acetylcholine-activated cation-selective channel activity|receptor activity			ovary(1)	1	all_lung(13;5.7e-12)|Lung NSC(13;1.6e-10)|Ovarian(28;0.00579)|Prostate(17;0.0119)|Lung SC(25;0.184)	all_lung(54;0.00026)|Lung NSC(58;0.000992)|Hepatocellular(245;0.0524)|Renal(179;0.0822)|Esophageal squamous(32;0.0954)	Lung(22;0.0199)|LUSC - Lung squamous cell carcinoma(45;0.0869)			GGCTGTCTTTCCTAACAGTTC	0.438													31	55					0	0	1	0	0
CHRNB3	1142	broad.mit.edu	37	8	42587335	42587335	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:42587335C>T	uc003xpi.1	+	5	1013	c.885C>T	c.(883-885)CTC>CTT	p.L295L		NM_000749	NP_000740	Q05901	ACHB3_HUMAN	cholinergic receptor, nicotinic, beta	295					synaptic transmission, cholinergic	cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	nicotinic acetylcholine-activated cation-selective channel activity|receptor activity			ovary(1)	1	all_lung(13;5.7e-12)|Lung NSC(13;1.6e-10)|Ovarian(28;0.00579)|Prostate(17;0.0119)|Lung SC(25;0.184)	all_lung(54;0.00026)|Lung NSC(58;0.000992)|Hepatocellular(245;0.0524)|Renal(179;0.0822)|Esophageal squamous(32;0.0954)	Lung(22;0.0199)|LUSC - Lung squamous cell carcinoma(45;0.0869)			TCATTCCTCTCATTGGAGAGT	0.408													65	112					0	0	1	0	0
UBE2V2	7336	broad.mit.edu	37	8	48962467	48962467	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:48962467C>T	uc003xqm.2	+	3	241	c.220C>T	c.(220-222)CCA>TCA	p.P74S		NM_003350	NP_003341	Q15819	UB2V2_HUMAN	ubiquitin-conjugating enzyme E2v2	74					cell proliferation|DNA double-strand break processing|protein polyubiquitination|regulation of DNA repair	cytoplasm|nucleus|UBC13-MMS2 complex	acid-amino acid ligase activity|protein binding				0		all_cancers(86;0.026)|all_epithelial(80;0.000748)|Lung NSC(129;0.00171)|all_lung(136;0.00196)				ACCTAAATACCCAGAAGCTCC	0.299								Direct_reversal_of_damage|Rad6_pathway					21	32					0	0	1	0	0
PXDNL	137902	broad.mit.edu	37	8	52321362	52321362	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:52321362G>T	uc003xqu.3	-	17	2923	c.2822C>A	c.(2821-2823)CCC>CAC	p.P941H	PXDNL_uc003xqt.3_RNA	NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	941					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				GCACTCGGTGGGTGGGCCTGT	0.652													11	13					3.07112e-06	3.09743e-06	1	1	0
PXDNL	137902	broad.mit.edu	37	8	52321468	52321468	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:52321468C>T	uc003xqu.3	-	17	2817	c.2716G>A	c.(2716-2718)GAA>AAA	p.E906K	PXDNL_uc003xqt.3_RNA	NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	906					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				GCCTGGGATTCCCGCTCCGAG	0.582													15	32					0	0	1	0	0
OPRK1	4986	broad.mit.edu	37	8	54141948	54141948	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:54141948C>T	uc003xrh.1	-	3	1427	c.1052G>A	c.(1051-1053)AGG>AAG	p.R351K	OPRK1_uc003xri.1_Missense_Mutation_p.R351K|OPRK1_uc010lyc.1_Missense_Mutation_p.R262K	NM_000912	NP_000903	P41145	OPRK_HUMAN	opioid receptor, kappa 1	351	Cytoplasmic (Potential).				behavior|immune response|inhibition of adenylate cyclase activity by G-protein signaling pathway|sensory perception|synaptic transmission|viral genome replication	integral to plasma membrane	kappa-opioid receptor activity|protein binding			ovary(1)|skin(1)	2		all_epithelial(80;0.066)|Lung NSC(129;0.0804)|all_lung(136;0.136)			Buprenorphine(DB00921)|Butorphanol(DB00611)|Cocaine(DB00907)|Codeine(DB00318)|Dezocine(DB01209)|Hydrocodone(DB00956)|Hydromorphone(DB00327)|Meperidine(DB00454)|Mirtazapine(DB00370)|Morphine(DB00295)|Nalbuphine(DB00844)|Naltrexone(DB00704)|Oxycodone(DB00497)|Pentazocine(DB00652)|Propoxyphene(DB00647)|Tramadol(DB00193)	CCGCTCCATCCTCATCTTCAG	0.478													22	44					0	0	1	0	0
RP1	6101	broad.mit.edu	37	8	55534822	55534822	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:55534822G>A	uc003xsd.1	+	3	909	c.761G>A	c.(760-762)GGA>GAA	p.G254E	RP1_uc011ldy.1_Missense_Mutation_p.G254E	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	254					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			TACCCCAAGGGAAATGCAAAG	0.418													17	35					0	0	1	0	0
RP1	6101	broad.mit.edu	37	8	55540684	55540684	+	Missense_Mutation	SNP	T	G	G			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:55540684T>G	uc003xsd.1	+	4	4390	c.4242T>G	c.(4240-4242)CAT>CAG	p.H1414Q	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	1414					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			ATAAGAAACATAGTTCTCTAG	0.343													18	40					0	0	1	0	0
RP1	6101	broad.mit.edu	37	8	55542837	55542837	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:55542837A>G	uc003xsd.1	+	4	6543	c.6395A>G	c.(6394-6396)AAT>AGT	p.N2132S	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	2132					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			GAGGGTGAAAATCTTTTCATT	0.323													13	33					0	0	1	0	0
RP1	6101	broad.mit.edu	37	8	55542844	55542844	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:55542844C>T	uc003xsd.1	+	4	6550	c.6402C>T	c.(6400-6402)TTC>TTT	p.F2134F	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	2134					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			AAAATCTTTTCATTTGGGAAG	0.318													17	30					0	0	1	0	0
CYP7A1	1581	broad.mit.edu	37	8	59405029	59405030	+	Missense_Mutation	DNP	AG	TA	TA			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:59405029_59405030AG>TA	uc003xtm.3	-	5	1160_1161	c.1097_1098CT>TA	c.(1096-1098)GCT>GTA	p.A366V		NM_000780	NP_000771	P22680	CP7A1_HUMAN	cytochrome P450, family 7, subfamily A,	366					bile acid biosynthetic process|cellular lipid metabolic process|cellular response to cholesterol|cellular response to glucose stimulus|cholesterol catabolic process|cholesterol homeostasis|regulation of bile acid biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	cholesterol 7-alpha-monooxygenase activity|electron carrier activity|heme binding			ovary(1)	1		all_lung(136;0.0271)|Lung NSC(129;0.0351)|all_epithelial(80;0.0554)				AATCCTCCTTAGCTGTCCGGAT	0.361									Neonatal_Giant_Cell_Hepatitis				23	61					0	0	1	0	0
MYBL1	4603	broad.mit.edu	37	8	67485599	67485599	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:67485599C>T	uc003xwj.2	-	11	2020	c.1613G>A	c.(1612-1614)GGG>GAG	p.G538E	MYBL1_uc003xwl.2_Missense_Mutation_p.G538E|MYBL1_uc003xwk.2_Missense_Mutation_p.G537E	NM_001080416	NP_001073885	P10243	MYBA_HUMAN	v-myb myeloblastosis viral oncogene homolog	538	Negative regulatory domain (By similarity).				positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(2)|pancreas(1)	3			Epithelial(68;0.00211)|all cancers(69;0.00726)|OV - Ovarian serous cystadenocarcinoma(28;0.00989)|BRCA - Breast invasive adenocarcinoma(89;0.0938)			ACCTACTTACCCTACATTTTC	0.343													38	89					0	0	1	0	0
ARFGEF1	10565	broad.mit.edu	37	8	68165840	68165840	+	Silent	SNP	T	C	C			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:68165840T>C	uc003xxo.1	-	18	2934	c.2544A>G	c.(2542-2544)ACA>ACG	p.T848T	ARFGEF1_uc003xxl.1_Silent_p.T302T	NM_006421	NP_006412	Q9Y6D6	BIG1_HUMAN	brefeldin A-inhibited guanine	848					exocytosis|regulation of ARF protein signal transduction	cytoplasm	ARF guanyl-nucleotide exchange factor activity|myosin binding			ovary(4)|upper_aerodigestive_tract(1)|large_intestine(1)|lung(1)|kidney(1)	8	Breast(64;0.214)	Lung NSC(129;0.0908)|all_lung(136;0.152)	Epithelial(68;0.0043)|OV - Ovarian serous cystadenocarcinoma(28;0.00578)|all cancers(69;0.0173)|BRCA - Breast invasive adenocarcinoma(89;0.206)			ATTGTTCCTTTGTCATTTTAT	0.279													7	7					0	0	1	0	0
ARFGEF1	10565	broad.mit.edu	37	8	68184022	68184022	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:68184022G>A	uc003xxo.1	-	10	1877	c.1487C>T	c.(1486-1488)TCT>TTT	p.S496F		NM_006421	NP_006412	Q9Y6D6	BIG1_HUMAN	brefeldin A-inhibited guanine	496					exocytosis|regulation of ARF protein signal transduction	cytoplasm	ARF guanyl-nucleotide exchange factor activity|myosin binding			ovary(4)|upper_aerodigestive_tract(1)|large_intestine(1)|lung(1)|kidney(1)	8	Breast(64;0.214)	Lung NSC(129;0.0908)|all_lung(136;0.152)	Epithelial(68;0.0043)|OV - Ovarian serous cystadenocarcinoma(28;0.00578)|all cancers(69;0.0173)|BRCA - Breast invasive adenocarcinoma(89;0.206)			CTCTGGAACAGATGAGACTCC	0.343													21	41					0	0	1	0	0
PREX2	80243	broad.mit.edu	37	8	68939517	68939517	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:68939517A>G	uc003xxv.1	+	5	529	c.502A>G	c.(502-504)ACA>GCA	p.T168A	PREX2_uc003xxu.1_Missense_Mutation_p.T168A|PREX2_uc011lez.1_Missense_Mutation_p.T103A	NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	168	DH.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						ATATTTAGTAACACCAATACA	0.343													23	39					0	0	1	0	0
PREX2	80243	broad.mit.edu	37	8	68956812	68956812	+	Silent	SNP	G	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:68956812G>T	uc003xxv.1	+	8	957	c.930G>T	c.(928-930)GTG>GTT	p.V310V	PREX2_uc003xxu.1_Silent_p.V310V|PREX2_uc011lez.1_Silent_p.V245V	NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	310	PH.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						TGGAGAATGTGGATGATGGCA	0.428													32	75					8.4185e-14	8.5207e-14	1	1	0
PREX2	80243	broad.mit.edu	37	8	69020454	69020454	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:69020454G>A	uc003xxv.1	+	24	2853	c.2826G>A	c.(2824-2826)GTG>GTA	p.V942V	PREX2_uc011lez.1_Silent_p.V877V	NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	942					G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						ATGTCAATGTGATGGAAGTTT	0.413													14	27					0	0	1	0	0
TRAM1	23471	broad.mit.edu	37	8	71510466	71510466	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:71510466G>A	uc003xyo.1	-	3	382	c.212C>T	c.(211-213)TCC>TTC	p.S71F	TRAM1_uc011lfc.1_Missense_Mutation_p.S40F	NM_014294	NP_055109	Q15629	TRAM1_HUMAN	translocation associated membrane protein 1	71	Lumenal (Potential).				cotranslational protein targeting to membrane|transmembrane transport	endoplasmic reticulum membrane|integral to membrane	protein binding|receptor activity			ovary(1)	1			Epithelial(68;0.00679)|all cancers(69;0.0324)|OV - Ovarian serous cystadenocarcinoma(28;0.0509)			GTAATAAAGGGACACTGATTC	0.333													19	46					0	0	1	0	0
KCNB2	9312	broad.mit.edu	37	8	73480284	73480284	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:73480284C>T	uc003xzb.2	+	2	903	c.315C>T	c.(313-315)ACC>ACT	p.T105T		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	105	Cytoplasmic (Potential).				regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			skin(3)|large_intestine(1)|pancreas(1)|ovary(1)|central_nervous_system(1)	7	Breast(64;0.137)		Epithelial(68;0.105)			TCTACCGGACCGGGAAACTCC	0.468													41	55					0	0	1	0	0
KCNB2	9312	broad.mit.edu	37	8	73849114	73849114	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:73849114C>T	uc003xzb.2	+	3	2112	c.1524C>T	c.(1522-1524)TTC>TTT	p.F508F		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	508	Cytoplasmic (Potential).				regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			skin(3)|large_intestine(1)|pancreas(1)|ovary(1)|central_nervous_system(1)	7	Breast(64;0.137)		Epithelial(68;0.105)			ACAAGTCTTTCGAGAATAAGT	0.547													50	85					0	0	1	0	0
ZFHX4	79776	broad.mit.edu	37	8	77764874	77764874	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:77764874G>A	uc003yav.2	+	10	5969	c.5582G>A	c.(5581-5583)GGA>GAA	p.G1861E	ZFHX4_uc003yau.1_Missense_Mutation_p.G1906E|ZFHX4_uc003yaw.1_Missense_Mutation_p.G1861E	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	1861						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			GGGGCCAGAGGAAATGCTGCC	0.443										HNSCC(33;0.089)			6	18					0	0	1	0	0
ZFHX4	79776	broad.mit.edu	37	8	77767009	77767009	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:77767009G>A	uc003yav.2	+	10	8104	c.7717G>A	c.(7717-7719)GAA>AAA	p.E2573K	ZFHX4_uc003yau.1_Missense_Mutation_p.E2618K|ZFHX4_uc003yaw.1_Missense_Mutation_p.E2573K	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	2573	Homeobox 3.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			GGAACAGCTGGAAATACTCTA	0.433										HNSCC(33;0.089)			19	20					0	0	1	0	0
PSKH2	85481	broad.mit.edu	37	8	87060883	87060883	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:87060883G>A	uc011lfy.1	-	3	966	c.966C>T	c.(964-966)ACC>ACT	p.T322T		NM_033126	NP_149117	Q96QS6	KPSH2_HUMAN	protein serine kinase H2	322							ATP binding|protein serine/threonine kinase activity			stomach(2)|lung(2)|ovary(1)	5			STAD - Stomach adenocarcinoma(118;0.129)			CTGCAGCCATGGTGATCACCC	0.547													33	69					0	0	1	0	0
SLC7A13	157724	broad.mit.edu	37	8	87226776	87226776	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:87226776G>A	uc003ydq.1	-	4	1377	c.1279C>T	c.(1279-1281)CTG>TTG	p.L427L	SLC7A13_uc003ydr.1_3'UTR	NM_138817	NP_620172	Q8TCU3	S7A13_HUMAN	solute carrier family 7, (cationic amino acid	427	Helical; Name=12; (Potential).					integral to membrane	amino acid transmembrane transporter activity			central_nervous_system(1)	1						AGAACTAACAGAAGCACGTAG	0.348													17	30					0	0	1	0	0
CNBD1	168975	broad.mit.edu	37	8	88249246	88249246	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:88249246C>T	uc003ydy.2	+	6	725	c.677C>T	c.(676-678)TCG>TTG	p.S226L		NM_173538	NP_775809	Q8NA66	CNBD1_HUMAN	cyclic nucleotide binding domain containing 1	226										ovary(3)	3						TCACCAGACTCGTTCATATCT	0.383													34	63					0	0	1	0	0
RUNX1T1	862	broad.mit.edu	37	8	93017381	93017381	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:93017381C>T	uc003yfd.2	-	5	787	c.703G>A	c.(703-705)GAT>AAT	p.D235N	RUNX1T1_uc003yfc.1_Missense_Mutation_p.D208N|RUNX1T1_uc003yfe.1_Missense_Mutation_p.D198N|RUNX1T1_uc010mao.2_Missense_Mutation_p.D208N|RUNX1T1_uc011lgi.1_Missense_Mutation_p.D246N|RUNX1T1_uc003yfb.1_Missense_Mutation_p.D198N|RUNX1T1_uc003yff.1_Missense_Mutation_p.D198N	NM_175634	NP_783552	Q06455	MTG8_HUMAN	acute myelogenous leukemia 1 translocation 1	235					generation of precursor metabolites and energy	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(9)|large_intestine(3)|breast(2)|central_nervous_system(1)|pancreas(1)	16			BRCA - Breast invasive adenocarcinoma(11;0.0141)			TCGTTCACATCGAGAAGCAGC	0.552													54	69					0	0	1	0	0
RBM12B	389677	broad.mit.edu	37	8	94746976	94746976	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:94746976G>A	uc003yfz.2	-	3	1856	c.1663C>T	c.(1663-1665)CCA>TCA	p.P555S		NM_203390	NP_976324	Q8IXT5	RB12B_HUMAN	RNA binding motif protein 12B	555							nucleotide binding|RNA binding				0	Breast(36;4.14e-07)		BRCA - Breast invasive adenocarcinoma(8;0.0168)			AAGTCTTCTGGAGGGTGCCTG	0.542													32	43					0	0	1	0	0
ESRP1	54845	broad.mit.edu	37	8	95680314	95680314	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:95680314G>A	uc003ygq.3	+	10	1252	c.1069G>A	c.(1069-1071)GAA>AAA	p.E357K	ESRP1_uc003ygr.3_Missense_Mutation_p.E357K|ESRP1_uc003ygs.3_Missense_Mutation_p.E357K|ESRP1_uc003ygt.3_Missense_Mutation_p.E357K|ESRP1_uc003ygu.3_Missense_Mutation_p.E357K|ESRP1_uc003ygv.2_Missense_Mutation_p.E197K|ESRP1_uc003ygw.2_Missense_Mutation_p.E197K	NM_017697	NP_060167	Q6NXG1	ESRP1_HUMAN	RNA binding motif protein 35A isoform 1	357	RRM 2.				mRNA processing|regulation of RNA splicing|RNA splicing	nucleus|plasma membrane	mRNA binding|nucleotide binding		ESRP1/RAF1(4)	prostate(4)	4						TGGGGGAAAGGAAGGCATCCT	0.527													181	352					0	0	1	0	0
NIPAL2	79815	broad.mit.edu	37	8	99208210	99208210	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:99208210G>A	uc003yil.1	-	9	1160	c.904C>T	c.(904-906)CTT>TTT	p.L302F	NIPAL2_uc011lgw.1_Missense_Mutation_p.L98F|NIPAL2_uc003yim.1_Missense_Mutation_p.L302F	NM_024759	NP_079035	Q9H841	NPAL2_HUMAN	NIPA-like domain containing 2	302						integral to membrane					0						GGAGCACCAAGGAATTCCTGA	0.289													18	36					0	0	1	0	0
RGS22	26166	broad.mit.edu	37	8	101014449	101014449	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:101014449G>A	uc003yjb.1	-	18	2966	c.2771C>T	c.(2770-2772)TCT>TTT	p.S924F	RGS22_uc003yja.1_Missense_Mutation_p.S743F|RGS22_uc003yjc.1_Missense_Mutation_p.S912F|RGS22_uc011lgz.1_RNA	NM_015668	NP_056483	Q8NE09	RGS22_HUMAN	regulator of G-protein signaling 22	924	RGS 1.				negative regulation of signal transduction	cytoplasm|plasma membrane	GTPase activator activity|signal transducer activity			ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7			Epithelial(11;6.71e-08)|all cancers(13;4.19e-06)|OV - Ovarian serous cystadenocarcinoma(57;0.000469)|STAD - Stomach adenocarcinoma(118;0.169)			CTGATACAGAGAAGCTGGACT	0.308													21	37					0	0	1	0	0
SNX31	169166	broad.mit.edu	37	8	101601094	101601094	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:101601094C>T	uc003yjr.2	-	11	1243	c.1092G>A	c.(1090-1092)CAG>CAA	p.Q364Q	SNX31_uc011lha.1_Silent_p.Q159Q|SNX31_uc011lhb.1_Silent_p.Q265Q	NM_152628	NP_689841	Q8N9S9	SNX31_HUMAN	sorting nexin 31	364					cell communication|protein transport		phosphatidylinositol binding				0	all_cancers(14;4.01e-05)|all_epithelial(15;1.26e-07)|Lung NSC(17;0.000453)|all_lung(17;0.00125)		Epithelial(11;1.21e-11)|all cancers(13;2.62e-09)|OV - Ovarian serous cystadenocarcinoma(57;3.22e-06)|STAD - Stomach adenocarcinoma(118;0.206)			GAGAACTCACCTGTTTGGTGT	0.488													28	59					0	0	1	0	0
SNX31	169166	broad.mit.edu	37	8	101629886	101629886	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:101629886C>T	uc003yjr.2	-	5	545	c.394G>A	c.(394-396)GAA>AAA	p.E132K	SNX31_uc011lhb.1_Missense_Mutation_p.E33K	NM_152628	NP_689841	Q8N9S9	SNX31_HUMAN	sorting nexin 31	132					cell communication|protein transport		phosphatidylinositol binding				0	all_cancers(14;4.01e-05)|all_epithelial(15;1.26e-07)|Lung NSC(17;0.000453)|all_lung(17;0.00125)		Epithelial(11;1.21e-11)|all cancers(13;2.62e-09)|OV - Ovarian serous cystadenocarcinoma(57;3.22e-06)|STAD - Stomach adenocarcinoma(118;0.206)			GTTATAATTTCGATTCTAATA	0.368													18	61					0	0	1	0	0
TM7SF4	81501	broad.mit.edu	37	8	105367210	105367210	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:105367210C>T	uc003ylx.1	+	3	1184	c.1135C>T	c.(1135-1137)CCT>TCT	p.P379S		NM_030788	NP_110415	Q9H295	TM7S4_HUMAN	dendritic cell-specific transmembrane protein	379	Helical; (Potential).				osteoclast differentiation	cell surface|integral to membrane|plasma membrane				pancreas(2)|large_intestine(1)|ovary(1)	4			OV - Ovarian serous cystadenocarcinoma(57;1.61e-06)|STAD - Stomach adenocarcinoma(118;0.229)			GACCTGGGTTCCTCTCAGTGT	0.393													30	64					0	0	1	0	0
ANGPT1	284	broad.mit.edu	37	8	108264174	108264174	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:108264174C>T	uc003ymn.2	-	9	1874	c.1406G>A	c.(1405-1407)GGA>GAA	p.G469E	ANGPT1_uc011lhv.1_Missense_Mutation_p.G269E|ANGPT1_uc003ymo.2_Missense_Mutation_p.G468E	NM_001146	NP_001137	Q15389	ANGP1_HUMAN	angiopoietin 1 precursor	469	Fibrinogen C-terminal.				activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|blood coagulation|cell differentiation|heparin biosynthetic process|leukocyte migration|negative regulation of cell adhesion|negative regulation of endothelial cell apoptosis|negative regulation of vascular permeability|positive chemotaxis|positive regulation of blood vessel endothelial cell migration|positive regulation of ERK1 and ERK2 cascade|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of protein ubiquitination|positive regulation of receptor internalization|protein localization at cell surface|regulation of satellite cell proliferation|sprouting angiogenesis|Tie receptor signaling pathway	extracellular space|membrane raft|microvillus|plasma membrane	receptor tyrosine kinase binding			ovary(3)|skin(3)|upper_aerodigestive_tract(1)	7	Breast(1;5.06e-08)		OV - Ovarian serous cystadenocarcinoma(57;5.53e-09)			ATTCAGTTTTCCATGGTTTTG	0.398													50	98					0	0	1	0	0
ANGPT1	284	broad.mit.edu	37	8	108348406	108348406	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:108348406C>T	uc003ymn.2	-	3	1015	c.547G>A	c.(547-549)GAA>AAA	p.E183K	ANGPT1_uc011lhv.1_5'UTR|ANGPT1_uc003ymo.2_Missense_Mutation_p.E183K	NM_001146	NP_001137	Q15389	ANGP1_HUMAN	angiopoietin 1 precursor	183	Potential.				activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|blood coagulation|cell differentiation|heparin biosynthetic process|leukocyte migration|negative regulation of cell adhesion|negative regulation of endothelial cell apoptosis|negative regulation of vascular permeability|positive chemotaxis|positive regulation of blood vessel endothelial cell migration|positive regulation of ERK1 and ERK2 cascade|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of protein ubiquitination|positive regulation of receptor internalization|protein localization at cell surface|regulation of satellite cell proliferation|sprouting angiogenesis|Tie receptor signaling pathway	extracellular space|membrane raft|microvillus|plasma membrane	receptor tyrosine kinase binding			ovary(3)|skin(3)|upper_aerodigestive_tract(1)	7	Breast(1;5.06e-08)		OV - Ovarian serous cystadenocarcinoma(57;5.53e-09)			TTCAAGATTTCATTTGTCTGT	0.363													10	24					0	0	1	0	0
RSPO2	340419	broad.mit.edu	37	8	108970357	108970357	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:108970357G>A	uc003yms.2	-	5	1225	c.567C>T	c.(565-567)ACC>ACT	p.T189T	RSPO2_uc003ymq.2_Silent_p.T122T|RSPO2_uc003ymr.2_Silent_p.T125T	NM_178565	NP_848660	Q6UXX9	RSPO2_HUMAN	R-spondin family, member 2 precursor	189	TSP type-1.				Wnt receptor signaling pathway	extracellular region	heparin binding			skin(3)|ovary(2)|pancreas(1)|lung(1)	7			OV - Ovarian serous cystadenocarcinoma(57;1.55e-09)			ATTCAGCAATGGTTGGACACA	0.438													52	95					0	0	1	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110457518	110457518	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:110457518T>C	uc003yne.2	+	38	5524	c.5420T>C	c.(5419-5421)GTT>GCT	p.V1807A		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	1807	Extracellular (Potential).|IPT/TIG 10.				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			CCTCTCCCAGTTGGACATCAT	0.453										HNSCC(38;0.096)			51	85					0	0	1	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110535510	110535510	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:110535510C>T	uc003yne.2	+	76	12483	c.12379C>T	c.(12379-12381)CTC>TTC	p.L4127F		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	4127	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			GAGGGCCATACTCAAGGACTC	0.383										HNSCC(38;0.096)			27	44					0	0	1	0	0
CSMD3	114788	broad.mit.edu	37	8	113988197	113988197	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:113988197G>A	uc003ynu.2	-	7	1370	c.1211C>T	c.(1210-1212)TCA>TTA	p.S404L	CSMD3_uc003ynt.2_Missense_Mutation_p.S364L|CSMD3_uc011lhx.1_Intron	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	404	Extracellular (Potential).					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						GTCCAGACCTGAATTTCTGAG	0.493										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			47	85					0	0	1	0	0
SAMD12	401474	broad.mit.edu	37	8	119592994	119592994	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:119592994C>T	uc003yom.2	-	2	281	c.152G>A	c.(151-153)GGA>GAA	p.G51E	SAMD12_uc010mda.1_Missense_Mutation_p.G51E|SAMD12_uc010mdb.1_RNA	NM_207506	NP_997389	Q8N8I0	SAM12_HUMAN	sterile alpha motif domain containing 12 isoform	51										ovary(1)	1	all_cancers(13;3.91e-25)|Lung NSC(37;1.13e-07)|Ovarian(258;0.0249)		STAD - Stomach adenocarcinoma(47;0.00391)			CTTGGGAGTTCCTTTCTGGTC	0.428													31	50					0	0	1	0	0
COL14A1	7373	broad.mit.edu	37	8	121381667	121381667	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:121381667C>T	uc003yox.2	+	47	5519	c.5254C>T	c.(5254-5256)CCT>TCT	p.P1752S	COL14A1_uc003yoz.2_Missense_Mutation_p.P717S	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	1752	Triple-helical region 2 (COL1).				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			ACCCCAAGGTCCTTCTGGCCA	0.592													29	79					0	0	1	0	0
FER1L6	654463	broad.mit.edu	37	8	125022946	125022946	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:125022946G>A	uc003yqw.2	+	14	2019	c.1813G>A	c.(1813-1815)GAC>AAC	p.D605N	uc003yqx.1_Intron	NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	605	Cytoplasmic (Potential).					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			GAAAATGGCAGACTTCCTGGT	0.488													71	128					0	0	1	0	0
ZNF572	137209	broad.mit.edu	37	8	125989917	125989917	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:125989917A>T	uc003yrr.2	+	3	1562	c.1407A>T	c.(1405-1407)AAA>AAT	p.K469N		NM_152412	NP_689625	Q7Z3I7	ZN572_HUMAN	zinc finger protein 572	469	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2	Ovarian(258;0.0028)|all_neural(195;0.00294)|Hepatocellular(40;0.108)		STAD - Stomach adenocarcinoma(47;0.000918)|COAD - Colon adenocarcinoma(160;0.205)			AACCTTACAAATGTACCAGCT	0.458										HNSCC(60;0.17)			50	116					0	0	1	0	0
ADCY8	114	broad.mit.edu	37	8	132002745	132002745	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:132002745C>T	uc003ytd.3	-	2	1260	c.1004G>A	c.(1003-1005)GGA>GAA	p.G335E	ADCY8_uc010mds.2_Missense_Mutation_p.G335E	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	335	Helical; (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			GATGAAGATTCCAGCTGTGTT	0.507										HNSCC(32;0.087)			58	117					0	0	1	0	0
KCNQ3	3786	broad.mit.edu	37	8	133141596	133141596	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:133141596G>A	uc003ytj.2	-	15	2757	c.2532C>T	c.(2530-2532)CCC>CCT	p.P844P	KCNQ3_uc010mdt.2_Silent_p.P832P|uc003yti.2_5'Flank	NM_004519	NP_004510	O43525	KCNQ3_HUMAN	potassium voltage-gated channel KQT-like protein	844					axon guidance|synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Esophageal squamous(12;0.00507)|Ovarian(258;0.00579)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000311)			TGGGCGTGAAGGGGTCCGTGT	0.572													12	50					0	0	1	0	0
ST3GAL1	6482	broad.mit.edu	37	8	134472159	134472159	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:134472159C>T	uc003yuk.2	-	10	1700	c.871G>A	c.(871-873)GCA>ACA	p.A291T	ST3GAL1_uc003yum.2_Missense_Mutation_p.A291T	NM_173344	NP_775479	Q11201	SIA4A_HUMAN	ST3 beta-galactoside alpha-2,3-sialyltransferase	291	Lumenal (Potential).				protein glycosylation	extracellular region|Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,3-sialyltransferase activity				0	all_epithelial(106;1.53e-23)|Lung NSC(106;3.15e-07)|all_lung(105;1.26e-06)|Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.00721)			TTGCTGTCTGCCCCGAAGCCG	0.572													5	161					0	0	1	0	0
ZFAT	57623	broad.mit.edu	37	8	135649738	135649738	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:135649738G>A	uc003yup.2	-	3	589	c.414C>T	c.(412-414)ATC>ATT	p.I138I	ZFAT_uc003yun.2_Silent_p.I126I|ZFAT_uc003yuo.2_Silent_p.I126I|ZFAT_uc010meh.2_Silent_p.I126I|ZFAT_uc010mei.2_RNA|ZFAT_uc003yuq.2_Silent_p.I126I|ZFAT_uc010mej.2_Silent_p.I138I|ZFAT_uc003yur.2_Silent_p.I126I	NM_020863	NP_065914	Q9P243	ZFAT_HUMAN	zinc finger protein 406 isoform ZFAT-1	138	C2H2-type 2; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1	all_epithelial(106;8.26e-19)|Lung NSC(106;3.47e-07)|all_lung(105;1.39e-06)|Ovarian(258;0.0102)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0432)			AATTCAGCACGATAATGCAGA	0.507													48	77					0	0	1	0	0
FAM135B	51059	broad.mit.edu	37	8	139155261	139155261	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:139155261C>T	uc003yuy.2	-	16	3803	c.3632G>A	c.(3631-3633)CGA>CAA	p.R1211Q	FAM135B_uc003yux.2_Missense_Mutation_p.R1112Q|FAM135B_uc003yuz.2_RNA|FAM135B_uc003yva.2_Missense_Mutation_p.R773Q|FAM135B_uc003yvb.2_3'UTR	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	1211										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			TTACCTAATTCGGGATATGGA	0.393										HNSCC(54;0.14)			10	32					0	0	1	0	0
COL22A1	169044	broad.mit.edu	37	8	139696712	139696712	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:139696712C>T	uc003yvd.2	-	39	3415	c.2968G>A	c.(2968-2970)GGA>AGA	p.G990R	COL22A1_uc011ljo.1_Missense_Mutation_p.G290R	NM_152888	NP_690848	Q8NFW1	COMA1_HUMAN	collagen, type XXII, alpha 1	990	Pro-rich.|Gly-rich.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(11)|pancreas(1)|skin(1)	13	all_epithelial(106;1.55e-12)|Lung NSC(106;1.67e-05)|all_lung(105;3.39e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0517)			CCACGGAGTCCCTGGAGAAAT	0.537										HNSCC(7;0.00092)			44	79					0	0	1	0	0
SLC45A4	57210	broad.mit.edu	37	8	142222401	142222401	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:142222401G>A	uc003ywd.1	-	7	2351	c.2043C>T	c.(2041-2043)TCC>TCT	p.S681S	SLC45A4_uc003ywc.1_Silent_p.S681S|SLC45A4_uc010meq.1_Silent_p.S679S	NM_001080431	NP_001073900	Q5BKX6	S45A4_HUMAN	solute carrier family 45, member 4	732					transport	integral to membrane				ovary(2)	2	all_cancers(97;1.52e-15)|all_epithelial(106;2.92e-14)|Lung NSC(106;1.23e-05)|all_lung(105;1.75e-05)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0493)			CGGCCAACGGGGAAGACAGGC	0.632													17	34					0	0	1	0	0
CYP11B1	1584	broad.mit.edu	37	8	143960599	143960599	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:143960599C>T	uc003yxi.2	-	2	251	c.244G>A	c.(244-246)GAC>AAC	p.D82N	CYP11B1_uc003yxh.2_5'Flank|CYP11B1_uc003yxj.2_Missense_Mutation_p.D82N|CYP11B1_uc010mey.2_Missense_Mutation_p.D127N	NM_000497	NP_000488	P15538	C11B1_HUMAN	cytochrome P450, family 11, subfamily B,	82					aldosterone biosynthetic process|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|glucose homeostasis|immune response|regulation of blood pressure|response to stress|xenobiotic metabolic process	mitochondrial inner membrane	electron carrier activity|steroid 11-beta-monooxygenase activity			ovary(3)	3	all_cancers(97;4.74e-11)|all_epithelial(106;2.06e-08)|Lung NSC(106;0.000228)|all_lung(105;0.000633)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)				Mitotane(DB00648)	CCTCCCAAGTCGTACCTGTGG	0.637									Familial_Hyperaldosteronism_type_I				42	56					0	0	1	0	0
FAM83H	286077	broad.mit.edu	37	8	144809116	144809116	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr8:144809116G>A	uc003yzk.2	-	5	2584	c.2515C>T	c.(2515-2517)CAG>TAG	p.Q839*	FAM83H_uc010mfk.1_RNA	NM_198488	NP_940890	Q6ZRV2	FA83H_HUMAN	FAM83H	839					biomineral tissue development					lung(1)|central_nervous_system(1)|pancreas(1)	3	all_cancers(97;3.74e-11)|all_epithelial(106;2.62e-09)|Lung NSC(106;0.00013)|all_lung(105;0.000374)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;3.38e-41)|Epithelial(56;6.8e-40)|all cancers(56;6.43e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.146)			GAGTGGCTCTGGGCAGAGAGG	0.701													4	15					0	0	1	0	0
RFX3	5991	broad.mit.edu	37	9	3330346	3330347	+	Missense_Mutation	DNP	GC	TT	TT			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr9:3330346_3330347GC>TT	uc003zhr.2	-	5	698_699	c.386_387GC>AA	c.(385-387)AGC>AAA	p.S129K	RFX3_uc010mhd.2_Missense_Mutation_p.S129K|RFX3_uc003zhs.1_Missense_Mutation_p.S129K|RFX3_uc003zht.1_Missense_Mutation_p.S129K|RFX3_uc010mhe.1_Missense_Mutation_p.S129K	NM_134428	NP_602304	P48380	RFX3_HUMAN	regulatory factor X3 isoform b	129					cell maturation|ciliary cell motility|cilium assembly|cilium movement involved in determination of left/right asymmetry|endocrine pancreas development|negative regulation of transcription, DNA-dependent|positive regulation of transcription from RNA polymerase II promoter|positive regulation of type B pancreatic cell development|regulation of insulin secretion	nuclear chromatin	protein binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding			ovary(2)|central_nervous_system(1)|pancreas(1)	4				GBM - Glioblastoma multiforme(50;0.00124)|Lung(2;0.0337)		CTCCAGAGCTGCTGATGAGTTG	0.54													20	24					0	0	1	0	0
RFX3	5991	broad.mit.edu	37	9	3346738	3346738	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr9:3346738C>T	uc003zhr.2	-	4	456	c.144G>A	c.(142-144)CAG>CAA	p.Q48Q	RFX3_uc010mhd.2_Silent_p.Q48Q|RFX3_uc003zhs.1_Silent_p.Q48Q|RFX3_uc003zht.1_Silent_p.Q48Q|RFX3_uc010mhe.1_Silent_p.Q48Q	NM_134428	NP_602304	P48380	RFX3_HUMAN	regulatory factor X3 isoform b	48					cell maturation|ciliary cell motility|cilium assembly|cilium movement involved in determination of left/right asymmetry|endocrine pancreas development|negative regulation of transcription, DNA-dependent|positive regulation of transcription from RNA polymerase II promoter|positive regulation of type B pancreatic cell development|regulation of insulin secretion	nuclear chromatin	protein binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding			ovary(2)|central_nervous_system(1)|pancreas(1)	4				GBM - Glioblastoma multiforme(50;0.00124)|Lung(2;0.0337)		CATGTTGTACCTGCTGCACAG	0.408													29	17					0	0	1	0	0
INSL4	3641	broad.mit.edu	37	9	5233772	5233772	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr9:5233772G>A	uc003ziy.2	+	2	420	c.315G>A	c.(313-315)AAG>AAA	p.K105K		NM_002195	NP_002186	Q14641	INSL4_HUMAN	insulin-like 4 precursor	105					cell proliferation|cell-cell signaling|female pregnancy|multicellular organismal development|signal transduction	extracellular space|soluble fraction	hormone activity|insulin-like growth factor receptor binding				0	all_hematologic(13;0.137)	Acute lymphoblastic leukemia(23;0.158)		GBM - Glioblastoma multiforme(50;0.0201)|Lung(218;0.14)		CATCATTGAAGAAAATAATAC	0.388													15	20					0	0	1	0	0
PTPRD	5789	broad.mit.edu	37	9	8521497	8521497	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr9:8521497G>A	uc003zkk.2	-	19	1452	c.741C>T	c.(739-741)ATC>ATT	p.I247I	PTPRD_uc003zkp.2_Silent_p.I247I|PTPRD_uc003zkq.2_Silent_p.I247I|PTPRD_uc003zkr.2_Silent_p.I241I|PTPRD_uc003zks.2_Silent_p.I237I|PTPRD_uc003zkl.2_Silent_p.I247I|PTPRD_uc003zkm.2_Silent_p.I234I|PTPRD_uc003zkn.2_Silent_p.I247I|PTPRD_uc003zko.2_Silent_p.I244I	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	247	Extracellular (Potential).|Ig-like C2-type 3.				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		CGCCTGGCATGATTTCATGAT	0.468										TSP Lung(15;0.13)			26	25					0	0	1	0	0
FREM1	158326	broad.mit.edu	37	9	14842559	14842559	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr9:14842559C>T	uc003zlm.2	-	9	2083	c.1493G>A	c.(1492-1494)CGG>CAG	p.R498Q	FREM1_uc010mic.2_RNA	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	498	CSPG 2.				cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		ATCAAATATCCGGAAGACCAC	0.502													49	39					0	0	1	0	0
FREM1	158326	broad.mit.edu	37	9	14846068	14846068	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr9:14846068T>C	uc003zlm.2	-	8	1873	c.1283A>G	c.(1282-1284)CAG>CGG	p.Q428R	FREM1_uc010mic.2_RNA	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	428	CSPG 2.				cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		GGCTCGAGACTGCCCCTCAAG	0.403													3	2					0	0	1	0	0
TTC39B	158219	broad.mit.edu	37	9	15192694	15192694	+	Splice_Site	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr9:15192694C>T	uc003zlr.1	-	9	748	c.627_splice	c.e9-1	p.K209_splice	TTC39B_uc003zlq.1_Splice_Site_p.K178_splice|TTC39B_uc011lmp.1_Splice_Site_p.K110_splice|TTC39B_uc010mie.1_Splice_Site_p.K207_splice|TTC39B_uc011lmq.1_Splice_Site_p.K209_splice|TTC39B_uc011lmr.1_Splice_Site_p.K140_splice|TTC39B_uc010mif.1_Splice_Site_p.K209_splice|TTC39B_uc003zls.1_Splice_Site_p.K110_splice|TTC39B_uc010mig.1_Splice_Site_p.K178_splice|TTC39B_uc011lms.1_Splice_Site	NM_152574	NP_689787	Q5VTQ0	TT39B_HUMAN	tetratricopeptide repeat domain 39B								binding			ovary(1)	1						AAGACATTCTCTGGGTTGAAG	0.348													16	22					0	0	1	0	0
BNC2	54796	broad.mit.edu	37	9	16436451	16436451	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr9:16436451C>T	uc003zml.2	-	6	1881	c.1741G>A	c.(1741-1743)GAA>AAA	p.E581K	BNC2_uc011lmw.1_Missense_Mutation_p.E486K|BNC2_uc003zmm.2_Missense_Mutation_p.E539K|BNC2_uc003zmq.1_Missense_Mutation_p.E595K|BNC2_uc003zmr.1_Missense_Mutation_p.E618K|BNC2_uc003zmp.1_Missense_Mutation_p.E609K|BNC2_uc010mij.1_Missense_Mutation_p.E503K|BNC2_uc011lmv.1_Missense_Mutation_p.E407K|BNC2_uc003zmo.1_Missense_Mutation_p.E503K|BNC2_uc003zmj.2_Missense_Mutation_p.E346K|BNC2_uc003zmk.2_RNA|BNC2_uc003zmi.2_Missense_Mutation_p.E346K|BNC2_uc003zmn.1_Missense_Mutation_p.E346K	NM_017637	NP_060107	Q6ZN30	BNC2_HUMAN	basonuclin 2	581	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	zinc ion binding			ovary(2)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(50;9.01e-08)		CTCACCATTTCCCCTGGAGTG	0.522													49	37					0	0	1	0	0
IFNA16	3449	broad.mit.edu	37	9	21216873	21216873	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr9:21216873C>T	uc003zor.1	-	1	438	c.432G>A	c.(430-432)AGG>AGA	p.R144R	IFNA14_uc003zoo.1_Intron	NM_002173	NP_002164	P05015	IFN16_HUMAN	interferon, alpha 16 precursor	144					blood coagulation|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|interferon-alpha/beta receptor binding			skin(1)	1				Lung(24;2.12e-22)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)|OV - Ovarian serous cystadenocarcinoma(39;0.116)		GAAAGTATTTCCTCACAGCCA	0.458													108	81					0	0	1	0	0
CDKN2A	1029	broad.mit.edu	37	9	21971120	21971121	+	Nonsense_Mutation	DNP	GG	AA	AA	rs121913388		TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr9:21971120_21971121GG>AA	uc003zpk.2	-	2	449_450	c.237_238CC>TT	c.(235-240)ACCCGA>ACTTGA	p.R80*	MTAP_uc003zpi.1_Intron|CDKN2A_uc003zpj.2_3'UTR|CDKN2A_uc010miu.2_RNA|CDKN2A_uc003zpl.2_Missense_Mutation_p.P135L	NM_000077	NP_000068	P42771	CD2A1_HUMAN	cyclin-dependent kinase inhibitor 2A isoform 1	80	ANK 3.		R -> P (in CMM2; loss of CDK4 binding).|R -> L (in a head and neck tumor).		cell cycle arrest|cell cycle checkpoint|G1 phase of mitotic cell cycle|G1/S transition of mitotic cell cycle|induction of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of cell-matrix adhesion|negative regulation of cyclin-dependent protein kinase activity|negative regulation of NF-kappaB transcription factor activity|positive regulation of macrophage apoptosis|positive regulation of smooth muscle cell apoptosis|Ras protein signal transduction|replicative senescence	cytosol|nucleus	cyclin-dependent protein kinase inhibitor activity|NF-kappaB binding|protein binding|protein binding|protein kinase binding	p.0?(1112)|p.R80*(88)|p.?(13)|p.R80Q(2)|p.P135L(2)|p.T79fs*37(1)|p.L65fs*38(1)|p.R80fs*66(1)|p.A76fs*64(1)|p.T79fs*65(1)|p.E61_L94del(1)|p.A68fs*3(1)|p.R80fs*34(1)|p.R80?(1)|p.T79T(1)|p.R80L(1)		haematopoietic_and_lymphoid_tissue(647)|skin(419)|upper_aerodigestive_tract(414)|central_nervous_system(381)|lung(325)|pancreas(244)|oesophagus(230)|urinary_tract(225)|pleura(94)|liver(91)|soft_tissue(79)|bone(77)|ovary(76)|biliary_tract(71)|stomach(46)|breast(46)|kidney(39)|NS(28)|thyroid(24)|cervix(23)|meninges(18)|genital_tract(15)|endometrium(13)|prostate(11)|autonomic_ganglia(10)|salivary_gland(10)|large_intestine(9)|adrenal_gland(6)|eye(4)|vulva(2)|small_intestine(1)	3678		all_cancers(5;0)|Acute lymphoblastic leukemia(3;0)|all_hematologic(3;0)|all_epithelial(2;2.37e-290)|Lung NSC(2;1.26e-139)|all_lung(2;4.48e-131)|Glioma(2;3.26e-60)|all_neural(2;2.1e-52)|Renal(3;1.07e-46)|Esophageal squamous(3;3.83e-46)|Melanoma(2;2.74e-34)|Breast(3;1.14e-11)|Ovarian(3;0.000128)|Hepatocellular(5;0.00162)|Colorectal(97;0.172)		all cancers(2;0)|GBM - Glioblastoma multiforme(3;0)|Lung(2;4.07e-74)|Epithelial(2;1.08e-61)|LUSC - Lung squamous cell carcinoma(2;3.82e-48)|LUAD - Lung adenocarcinoma(2;4.56e-26)|OV - Ovarian serous cystadenocarcinoma(39;7.64e-10)|BRCA - Breast invasive adenocarcinoma(2;5.01e-09)|STAD - Stomach adenocarcinoma(4;4.63e-07)|Kidney(2;5.79e-07)|KIRC - Kidney renal clear cell carcinoma(2;7.27e-07)|COAD - Colon adenocarcinoma(8;5.15e-05)		TGCACGGGTCGGGTGAGAGTGG	0.728	R80*(MEWO_SKIN)|R80*(HSC4_UPPER_AERODIGESTIVE_TRACT)	17							Uveal_Melanoma_Familial|Familial_Malignant_Melanoma_and_Tumors_of_the_Nervous_System|Hereditary_Melanoma	HNSCC(2;<9.43e_08)|TSP Lung(5;3.83e-07)			71	40					0	0	1	0	0
TEK	7010	broad.mit.edu	37	9	27183467	27183467	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr9:27183467G>A	uc003zqi.3	+	8	1483	c.1041G>A	c.(1039-1041)AGG>AGA	p.R347R	TEK_uc011lnn.1_Missense_Mutation_p.D351N|TEK_uc011lno.1_Silent_p.R304R|TEK_uc011lnp.1_Silent_p.R200R|TEK_uc003zqj.1_Silent_p.R281R	NM_000459	NP_000450	Q02763	TIE2_HUMAN	TEK tyrosine kinase, endothelial precursor	347	Extracellular (Potential).				angiogenesis|blood coagulation|cell-cell signaling|leukocyte migration|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein kinase B signaling cascade|protein oligomerization|transmembrane receptor protein tyrosine kinase signaling pathway	apical plasma membrane|basolateral plasma membrane|cell surface|integral to plasma membrane|membrane raft|microvillus	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity			ovary(3)|central_nervous_system(3)|breast(3)|lung(2)|kidney(1)	12		all_neural(11;7.57e-10)|Myeloproliferative disorder(762;0.0255)		Lung(218;4.08e-05)|LUSC - Lung squamous cell carcinoma(38;0.00027)		GCATACAGAGGATGACCCCAA	0.363													84	75					0	0	1	0	0
LINGO2	158038	broad.mit.edu	37	9	27949200	27949200	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr9:27949200C>T	uc003zqu.1	-	2	1664	c.1470G>A	c.(1468-1470)GGG>GGA	p.G490G	LINGO2_uc010mjf.1_Silent_p.G490G|LINGO2_uc003zqv.1_Silent_p.G490G	NM_152570	NP_689783	Q7L985	LIGO2_HUMAN	leucine rich repeat and Ig domain containing 2	490	Ig-like C2-type.|Extracellular (Potential).					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3	Melanoma(11;0.242)	all_neural(11;2.78e-09)		UCEC - Uterine corpus endometrioid carcinoma (5;0.0818)|GBM - Glioblastoma multiforme(2;1.31e-34)|all cancers(2;2.37e-25)|Lung(2;7.48e-08)|LUSC - Lung squamous cell carcinoma(38;5.09e-07)|KIRC - Kidney renal clear cell carcinoma(2;0.0465)|Kidney(2;0.0604)		AGGTATCATTCCCAGCAGCAT	0.493													19	13					0	0	1	0	0
TOPORS	10210	broad.mit.edu	37	9	32543175	32543175	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr9:32543175C>T	uc003zrb.2	-	3	1515	c.1348G>A	c.(1348-1350)GTC>ATC	p.V450I	TOPORS_uc003zrc.2_Missense_Mutation_p.V383I	NM_005802	NP_005793	Q9NS56	TOPRS_HUMAN	topoisomerase I binding, arginine/serine-rich	450	Required for sumoylation and localization to discrete nuclear foci.|Interaction with SUMO1.				DNA damage response, signal transduction resulting in induction of apoptosis|maintenance of protein location in nucleus|proteasomal ubiquitin-dependent protein catabolic process|protein sumoylation|transcription, DNA-dependent	nuclear speck|PML body	antigen binding|DNA binding|DNA topoisomerase I binding|SUMO ligase activity|ubiquitin-protein ligase activity|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)|skin(1)	5			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.0018)		CCTCCTGTGACAAGTTCTTCA	0.408													23	39					0	0	1	0	0
TAF1L	138474	broad.mit.edu	37	9	32632954	32632954	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr9:32632954C>T	uc003zrg.1	-	1	2714	c.2624G>A	c.(2623-2625)GGG>GAG	p.G875E	uc003zrh.1_5'Flank	NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	875					male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding	p.G875G(1)		lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		TGAATCCATCCCTGTGCGTTT	0.458													46	31					0	0	1	0	0
TMC1	117531	broad.mit.edu	37	9	75309467	75309467	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr9:75309467G>A	uc004aiz.1	+	7	613	c.73G>A	c.(73-75)GAA>AAA	p.E25K	TMC1_uc010moz.1_Missense_Mutation_p.E25K|TMC1_uc004aja.1_RNA|TMC1_uc004ajb.1_RNA|TMC1_uc004ajc.1_5'UTR|TMC1_uc010mpa.1_5'UTR	NM_138691	NP_619636	Q8TDI8	TMC1_HUMAN	transmembrane channel-like 1	25	Cytoplasmic (Potential).|Arg/Asp/Glu/Lys-rich (highly charged).				sensory perception of sound	integral to membrane				ovary(1)	1						AGGTGAAGAGGAAGAGGAGGT	0.413													8	18					0	0	1	0	0
TRPM6	140803	broad.mit.edu	37	9	77377265	77377265	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr9:77377265G>A	uc004ajl.1	-	26	4560	c.4322C>T	c.(4321-4323)TCC>TTC	p.S1441F	TRPM6_uc004ajk.1_Missense_Mutation_p.S1436F|TRPM6_uc010mpb.1_RNA|TRPM6_uc010mpc.1_Intron|TRPM6_uc010mpd.1_Intron|TRPM6_uc010mpe.1_Intron|TRPM6_uc004ajj.1_Missense_Mutation_p.S397F	NM_017662	NP_060132	Q9BX84	TRPM6_HUMAN	transient receptor potential cation channel,	1441	Cytoplasmic (Potential).				response to toxin	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|stomach(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	8						CTTGGCTTGGGAAAGAGGGGA	0.468													45	69					0	0	1	0	0
PRUNE2	158471	broad.mit.edu	37	9	79267403	79267403	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr9:79267403G>A	uc010mpk.2	-	11	8677	c.8553C>T	c.(8551-8553)GGC>GGT	p.G2851G	PRUNE2_uc011lsk.1_Silent_p.G100G|PRUNE2_uc011lsl.1_Silent_p.G115G|PRUNE2_uc011lsm.1_Silent_p.G115G|PRUNE2_uc004akj.3_Silent_p.G304G|PRUNE2_uc010mpl.1_Silent_p.G304G	NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	2851					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						ACTTACCATGGCCAGTGTACT	0.388													54	168					0	0	1	0	0
FRMD3	257019	broad.mit.edu	37	9	85905523	85905523	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr9:85905523C>T	uc004ams.1	-	13	1392	c.1190G>A	c.(1189-1191)GGT>GAT	p.G397D	FRMD3_uc004amr.1_Missense_Mutation_p.G383D	NM_174938	NP_777598	A2A2Y4	FRMD3_HUMAN	FERM domain containing 3	397						cytoplasm|cytoskeleton|extrinsic to membrane|integral to membrane	cytoskeletal protein binding			ovary(1)|central_nervous_system(1)	2						CTTACCCTCACCCAGAGGAAG	0.507													17	78					0	0	1	0	0
FRMD3	257019	broad.mit.edu	37	9	85958165	85958165	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr9:85958165G>A	uc004ams.1	-	5	614	c.412C>T	c.(412-414)CAT>TAT	p.H138Y	FRMD3_uc004amr.1_Missense_Mutation_p.H124Y	NM_174938	NP_777598	A2A2Y4	FRMD3_HUMAN	FERM domain containing 3	138	FERM.					cytoplasm|cytoskeleton|extrinsic to membrane|integral to membrane	cytoskeletal protein binding			ovary(1)|central_nervous_system(1)	2						AGGCGGCCATGAAAAATGTCC	0.463													15	89					0	0	1	0	0
FRMD3	257019	broad.mit.edu	37	9	86004545	86004545	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr9:86004545G>A	uc004ams.1	-	2	428	c.226C>T	c.(226-228)CGC>TGC	p.R76C	FRMD3_uc004amr.1_Missense_Mutation_p.R62C	NM_174938	NP_777598	A2A2Y4	FRMD3_HUMAN	FERM domain containing 3	76	FERM.					cytoplasm|cytoskeleton|extrinsic to membrane|integral to membrane	cytoskeletal protein binding			ovary(1)|central_nervous_system(1)	2						TCCACATAGCGAATGCCAAAG	0.498													27	33					0	0	1	0	0
SLC28A3	64078	broad.mit.edu	37	9	86900947	86900947	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr9:86900947G>A	uc010mpz.2	-	13	1485	c.1360C>T	c.(1360-1362)CTG>TTG	p.L454L	SLC28A3_uc011lsy.1_Silent_p.L385L|SLC28A3_uc004anu.1_Silent_p.L454L	NM_022127	NP_071410	Q9HAS3	S28A3_HUMAN	concentrative Na+-nucleoside cotransporter	454	Helical; (Potential).				nucleobase, nucleoside and nucleotide metabolic process	integral to membrane|plasma membrane	nucleoside binding			upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)|skin(1)	4						AAGGCAATCAGATTCACAGCG	0.458													10	17					0	0	1	0	0
C9orf47	286223	broad.mit.edu	37	9	91605918	91605918	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr9:91605918G>A	uc004aqd.2	+	1	141	c.8G>A	c.(7-9)AGG>AAG	p.R3K	S1PR3_uc004aqe.2_5'Flank|C9orf47_uc004aqc.1_Missense_Mutation_p.R3K	NM_001001938	NP_001001938	Q6ZRZ4	CI047_HUMAN	hypothetical protein LOC286223 isoform 1	3						extracellular region					0						GAAATGGTCAGGATCTGGACA	0.562													6	11					0	0	1	0	0
ZNF169	169841	broad.mit.edu	37	9	97063357	97063357	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr9:97063357G>A	uc004aum.1	+	5	1622	c.1517G>A	c.(1516-1518)AGG>AAG	p.R506K		NM_194320	NP_919301	Q14929	ZN169_HUMAN	zinc finger protein 169	506	C2H2-type 10.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2		Acute lymphoblastic leukemia(62;0.136)				CGACACCAGAGGACACACTCA	0.542													9	37					0	0	1	0	0
KIAA1529	57653	broad.mit.edu	37	9	100116933	100116933	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr9:100116933G>A	uc011lut.1	+	35	4407	c.3634G>A	c.(3634-3636)GAG>AAG	p.E1212K	KIAA1529_uc004axe.1_Missense_Mutation_p.E1044K|KIAA1529_uc004axg.1_Missense_Mutation_p.E1073K|KIAA1529_uc004axh.1_RNA|KIAA1529_uc011luw.1_Missense_Mutation_p.E229K	NM_020893	NP_065944			hypothetical protein LOC57653											ovary(4)|large_intestine(2)|skin(1)	7		Acute lymphoblastic leukemia(62;0.154)				TGCCCGGATAGAGTTGGTTGA	0.493													24	59					0	0	1	0	0
TDRD7	23424	broad.mit.edu	37	9	100204113	100204113	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr9:100204113C>T	uc004axj.2	+	6	1036	c.811C>T	c.(811-813)CAA>TAA	p.Q271*	TDRD7_uc011lux.1_Nonsense_Mutation_p.Q197*	NM_014290	NP_055105	Q8NHU6	TDRD7_HUMAN	tudor domain containing 7	271	Lotus/OST-HTH 2.				lens fiber cell differentiation|lens morphogenesis in camera-type eye|posttranscriptional regulation of gene expression|spermatogenesis	chromatoid body	mRNA binding			ovary(2)|pancreas(1)	3		Acute lymphoblastic leukemia(62;0.158)				AGACCTTAATCAAGGAATTTT	0.358													20	27					0	0	1	0	0
GALNT12	79695	broad.mit.edu	37	9	101589156	101589156	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr9:101589156G>A	uc004ayz.2	+	3	664	c.664G>A	c.(664-666)GAT>AAT	p.D222N		NM_024642	NP_078918	Q8IXK2	GLT12_HUMAN	N-acetylgalactosaminyltransferase 12	222	Catalytic subdomain A.|Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			upper_aerodigestive_tract(1)|ovary(1)	2		Acute lymphoblastic leukemia(62;0.0559)				GGCGAGGGGCGATGTTCTGAC	0.657													4	7					0	0	1	0	0
ALDOB	229	broad.mit.edu	37	9	104188917	104188917	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr9:104188917C>T	uc004bbk.2	-	6	626	c.544G>A	c.(544-546)GGA>AGA	p.G182R		NM_000035	NP_000026	P05062	ALDOB_HUMAN	aldolase B, fructose-bisphosphate	182					fructose 1,6-bisphosphate metabolic process|fructose catabolic process|gluconeogenesis|glycolysis|NADH oxidation|positive regulation of ATPase activity|vacuolar proton-transporting V-type ATPase complex assembly	centriolar satellite|cytosol	ATPase binding|cytoskeletal protein binding|fructose binding|fructose-bisphosphate aldolase activity|identical protein binding			skin(1)	1		Acute lymphoblastic leukemia(62;0.0559)				GGTACCAGTCCATTCTAAAAA	0.393													27	63					0	0	1	0	0
ALDOB	229	broad.mit.edu	37	9	104192063	104192063	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr9:104192063C>T	uc004bbk.2	-	3	380	c.298G>A	c.(298-300)GAA>AAA	p.E100K		NM_000035	NP_000026	P05062	ALDOB_HUMAN	aldolase B, fructose-bisphosphate	100					fructose 1,6-bisphosphate metabolic process|fructose catabolic process|gluconeogenesis|glycolysis|NADH oxidation|positive regulation of ATPase activity|vacuolar proton-transporting V-type ATPase complex assembly	centriolar satellite|cytosol	ATPase binding|cytoskeletal protein binding|fructose binding|fructose-bisphosphate aldolase activity|identical protein binding			skin(1)	1		Acute lymphoblastic leukemia(62;0.0559)				ATCCCCTTTTCCTTGAGGATG	0.532													52	191					0	0	1	0	0
OR13F1	138805	broad.mit.edu	37	9	107266618	107266618	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr9:107266618C>T	uc011lvm.1	+	1	75	c.75C>T	c.(73-75)GTC>GTT	p.V25V		NM_001004485	NP_001004485	Q8NGS4	O13F1_HUMAN	olfactory receptor, family 13, subfamily F,	25	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)|skin(1)	3						AAGTTCAGGTCATCATATTTG	0.423													45	54					0	0	1	0	0
ABCA1	19	broad.mit.edu	37	9	107588068	107588068	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr9:107588068G>A	uc004bcl.2	-	17	2751	c.2438C>T	c.(2437-2439)CCT>CTT	p.P813L		NM_005502	NP_005493	O95477	ABCA1_HUMAN	ATP-binding cassette, sub-family A member 1	813					Cdc42 protein signal transduction|cellular lipid metabolic process|cholesterol efflux|cholesterol homeostasis|cholesterol metabolic process|endosome transport|G-protein coupled receptor protein signaling pathway|high-density lipoprotein particle assembly|interleukin-1 beta secretion|intracellular cholesterol transport|lysosome organization|negative regulation of cholesterol storage|negative regulation of macrophage derived foam cell differentiation|phospholipid efflux|phospholipid homeostasis|platelet dense granule organization|positive regulation of cAMP biosynthetic process|reverse cholesterol transport	integral to plasma membrane|membrane fraction|membrane raft|phagocytic vesicle	anion transmembrane transporter activity|apolipoprotein A-I receptor activity|ATP binding|ATPase activity|cholesterol transporter activity|phospholipid transporter activity|small GTPase binding|syntaxin-13 binding			large_intestine(4)|lung(4)|ovary(4)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	17				OV - Ovarian serous cystadenocarcinoma(323;0.023)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	TTCCTCCACAGGACTCTCAAA	0.512													25	51					0	0	1	0	0
ZNF462	58499	broad.mit.edu	37	9	109689114	109689114	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr9:109689114C>T	uc004bcz.2	+	3	3210	c.2921C>T	c.(2920-2922)TCC>TTC	p.S974F	ZNF462_uc010mto.2_Missense_Mutation_p.S822F|ZNF462_uc004bda.2_Missense_Mutation_p.S822F	NM_021224	NP_067047	Q96JM2	ZN462_HUMAN	zinc finger protein 462	974					transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(5)	5						AATACAGAATCCCAGACCCTG	0.498													24	53					0	0	1	0	0
KIAA0368	23392	broad.mit.edu	37	9	114140879	114140879	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr9:114140879C>T	uc004bfe.1	-	37	4469	c.4469G>A	c.(4468-4470)CGG>CAG	p.R1490Q		NM_001080398	NP_001073867			KIAA0368 protein												0						CTCTGTCGCCCGGAGGCTCAA	0.473													15	53					0	0	1	0	0
KIAA0368	23392	broad.mit.edu	37	9	114154101	114154101	+	Silent	SNP	A	G	G			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr9:114154101A>G	uc004bfe.1	-	30	3630	c.3630T>C	c.(3628-3630)GTT>GTC	p.V1210V		NM_001080398	NP_001073867			KIAA0368 protein												0						CTTCATGTTTAACTCTAAACC	0.353													5	10					0	0	1	0	0
TNC	3371	broad.mit.edu	37	9	117792609	117792609	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr9:117792609G>C	uc004bjj.3	-	24	6358	c.5996C>G	c.(5995-5997)ACC>AGC	p.T1999S	TNC_uc010mvf.2_Missense_Mutation_p.T1726S	NM_002160	NP_002151	P24821	TENA_HUMAN	tenascin C precursor	1999	Fibrinogen C-terminal.				cell adhesion|response to wounding|signal transduction	extracellular space	receptor binding|syndecan binding			central_nervous_system(4)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	7						CAGATAAATGGTGTAGAGGCC	0.517													49	57					0	0	1	0	0
TNC	3371	broad.mit.edu	37	9	117810645	117810645	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr9:117810645C>T	uc004bjj.3	-	16	5108	c.4746G>A	c.(4744-4746)AGG>AGA	p.R1582R	TNC_uc010mvf.2_Intron	NM_002160	NP_002151	P24821	TENA_HUMAN	tenascin C precursor	1582	Fibronectin type-III 11.				cell adhesion|response to wounding|signal transduction	extracellular space	receptor binding|syndecan binding			central_nervous_system(4)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	7						GCTCCAGCTTCCTCTGGGTTC	0.527													36	44					0	0	1	0	0
TNC	3371	broad.mit.edu	37	9	117810648	117810648	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr9:117810648C>T	uc004bjj.3	-	16	5105	c.4743G>A	c.(4741-4743)CAG>CAA	p.Q1581Q	TNC_uc010mvf.2_Intron	NM_002160	NP_002151	P24821	TENA_HUMAN	tenascin C precursor	1581	Fibronectin type-III 11.				cell adhesion|response to wounding|signal transduction	extracellular space	receptor binding|syndecan binding			central_nervous_system(4)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	7						CCAGCTTCCTCTGGGTTCCTG	0.532													35	39					0	0	1	0	0
TNC	3371	broad.mit.edu	37	9	117852935	117852935	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr9:117852935C>T	uc004bjj.3	-	2	725	c.363G>A	c.(361-363)GAG>GAA	p.E121E	TNC_uc010mvf.2_Silent_p.E121E	NM_002160	NP_002151	P24821	TENA_HUMAN	tenascin C precursor	121	Potential.				cell adhesion|response to wounding|signal transduction	extracellular space	receptor binding|syndecan binding			central_nervous_system(4)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	7						TGCTCAGCAGCTCCTTAACAT	0.587													60	229					0	0	1	0	0
DBC1	1620	broad.mit.edu	37	9	121929759	121929759	+	Missense_Mutation	SNP	C	T	T	rs151087333		TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr9:121929759C>T	uc004bkc.2	-	8	2345	c.1889G>A	c.(1888-1890)CGA>CAA	p.R630Q		NM_014618	NP_055433	O60477	DBC1_HUMAN	deleted in bladder cancer 1 precursor	630					cell cycle arrest|cell death	cytoplasm	protein binding	p.R630Q(1)		skin(3)|ovary(2)|central_nervous_system(2)|large_intestine(1)	8						AGTCTCATTTCGCAGTAGGGT	0.537													77	97					0	0	1	0	0
CDK5RAP2	55755	broad.mit.edu	37	9	123199718	123199718	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr9:123199718G>A	uc004bkf.2	-	25	3991	c.3810C>T	c.(3808-3810)TCC>TCT	p.S1270S	CDK5RAP2_uc010mvi.2_Silent_p.S279S|CDK5RAP2_uc004bke.2_Silent_p.S555S|CDK5RAP2_uc004bkg.2_Silent_p.S1270S|CDK5RAP2_uc011lxw.1_Silent_p.S535S|CDK5RAP2_uc011lxx.1_RNA|CDK5RAP2_uc011lxy.1_RNA|CDK5RAP2_uc011lxz.1_Silent_p.S535S|CDK5RAP2_uc011lya.1_Silent_p.S535S|CDK5RAP2_uc004bkh.1_Silent_p.S1040S|CDK5RAP2_uc004bki.2_Silent_p.S1037S	NM_018249	NP_060719	Q96SN8	CK5P2_HUMAN	CDK5 regulatory subunit associated protein 2	1270					brain development|centrosome organization|chromosome segregation|G2/M transition of mitotic cell cycle|microtubule bundle formation|negative regulation of centriole replication|positive regulation of transcription, DNA-dependent|regulation of neuron differentiation|regulation of spindle checkpoint	cytosol|Golgi apparatus|microtubule|pericentriolar material|perinuclear region of cytoplasm|spindle pole	calmodulin binding|microtubule binding|neuronal Cdc2-like kinase binding|transcription regulatory region DNA binding			ovary(2)|lung(1)|skin(1)	4						TGTGTTGACGGGAGATGACAC	0.498													34	72					0	0	1	0	0
FBXW2	26190	broad.mit.edu	37	9	123550194	123550195	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr9:123550194_123550195CC>TT	uc004bkl.1	-	3	503_504	c.342_343GG>AA	c.(340-345)CAGGAC>CAAAAC	p.D115N	FBXW2_uc011lyc.1_5'UTR|FBXW2_uc004bkn.2_Missense_Mutation_p.D147N|FBXW2_uc004bkm.1_Missense_Mutation_p.D115N|FBXW2_uc010mvj.1_Missense_Mutation_p.D115N	NM_012164	NP_036296	Q9UKT8	FBXW2_HUMAN	F-box and WD repeat domain containing 2	115					proteolysis		protein binding|ubiquitin-protein ligase activity			urinary_tract(1)|ovary(1)|pancreas(1)|skin(1)	4						TGCAAAGCGTCCTGAACAGAAT	0.441													33	51					0	0	1	0	0
CEP110	11064	broad.mit.edu	37	9	123921207	123921207	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr9:123921207C>T	uc004bkx.1	+	29	4870	c.4839C>T	c.(4837-4839)CTC>CTT	p.L1613L	CEP110_uc010mvo.1_Silent_p.L282L|CEP110_uc004blb.1_Silent_p.L282L|CEP110_uc010mvp.1_5'UTR	NM_007018	NP_008949	Q7Z7A1	CNTRL_HUMAN	centrosomal protein 110kDa	1613	Potential.				cell division|G2/M transition of mitotic cell cycle	centrosome|cytosol	protein binding				0						TGCATCTACTCCAAGGAAGCA	0.473													19	96					0	0	1	0	0
GSN	2934	broad.mit.edu	37	9	124064325	124064325	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr9:124064325G>A	uc004blf.1	+	2	290	c.229G>A	c.(229-231)GAT>AAT	p.D77N	GSN_uc004bld.1_Missense_Mutation_p.D26N|GSN_uc010mvq.1_Missense_Mutation_p.D37N|GSN_uc010mvr.1_Missense_Mutation_p.D37N|GSN_uc010mvu.1_Missense_Mutation_p.D26N|GSN_uc010mvt.1_Missense_Mutation_p.D26N|GSN_uc010mvs.1_Missense_Mutation_p.D26N|GSN_uc004ble.1_Missense_Mutation_p.D26N|GSN_uc010mvv.1_Missense_Mutation_p.D26N|GSN_uc011lyh.1_Missense_Mutation_p.D43N|GSN_uc011lyi.1_Missense_Mutation_p.D26N|GSN_uc011lyj.1_Missense_Mutation_p.D50N	NM_000177	NP_000168	P06396	GELS_HUMAN	gelsolin isoform a precursor	77	Actin-severing (Potential).|Gelsolin-like 1.				actin filament polymerization|actin filament severing|barbed-end actin filament capping|cellular component disassembly involved in apoptosis|cilium morphogenesis	actin cytoskeleton|cytosol	actin binding|calcium ion binding|protein binding			breast(2)|ovary(1)	3						GGAGAAGTTCGATCTGGTGCC	0.582													24	75					0	0	1	0	0
OR1J2	26740	broad.mit.edu	37	9	125273315	125273315	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr9:125273315C>T	uc004bmj.1	+	4	1090	c.235C>T	c.(235-237)CCT>TCT	p.P79S	OR1J2_uc011lyv.1_Missense_Mutation_p.P79S	NM_054107	NP_473448	Q8NGS2	OR1J2_HUMAN	olfactory receptor, family 1, subfamily J,	79	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|pancreas(1)|breast(1)	5						TGTCACTGTCCCTAAGATGCT	0.448													44	65					0	0	1	0	0
OR1N2	138882	broad.mit.edu	37	9	125315495	125315495	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr9:125315495G>A	uc011lyx.1	+	1	47	c.47G>A	c.(46-48)GGA>GAA	p.G16E		NM_001004457	NP_001004457	Q8NGR9	OR1N2_HUMAN	olfactory receptor, family 1, subfamily N,	16	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4						CAAGGGATGGGAAAACCAGGC	0.378													19	52					0	0	1	0	0
OR1B1	347169	broad.mit.edu	37	9	125391069	125391069	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr9:125391069G>A	uc011lyz.1	-	1	746	c.746C>T	c.(745-747)TCC>TTC	p.S249F		NM_001004450	NP_001004450	Q8NGR6	OR1B1_HUMAN	olfactory receptor, family 1, subfamily B,	249	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GGTGAGGTGGGATCCACAGGT	0.542													31	37					0	0	1	0	0
PKN3	29941	broad.mit.edu	37	9	131475331	131475331	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr9:131475331G>A	uc004bvw.2	+	7	1229	c.836G>A	c.(835-837)GGG>GAG	p.G279E	PKN3_uc010myh.2_Missense_Mutation_p.G279E|PKN3_uc011mbk.1_5'UTR	NM_013355	NP_037487	Q6P5Z2	PKN3_HUMAN	protein kinase PKNbeta	279					signal transduction	Golgi apparatus|nucleus|perinuclear region of cytoplasm	ATP binding|protein binding|protein kinase C activity			stomach(2)|lung(2)	4						CTCCCCACAGGGACACTGCAG	0.682													21	28					0	0	1	0	0
ADAMTS13	11093	broad.mit.edu	37	9	136315041	136315041	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr9:136315041G>A	uc004cdv.3	+	23	3443	c.2999G>A	c.(2998-3000)CGC>CAC	p.R1000H	ADAMTS13_uc004cdp.3_Missense_Mutation_p.R227H|ADAMTS13_uc004cdt.1_Missense_Mutation_p.R1000H|ADAMTS13_uc004cdu.1_Missense_Mutation_p.R969H|ADAMTS13_uc004cdw.3_Missense_Mutation_p.R1000H|ADAMTS13_uc004cdx.3_Missense_Mutation_p.R969H|ADAMTS13_uc004cdy.1_RNA|ADAMTS13_uc004cdz.3_Missense_Mutation_p.R670H	NM_139025	NP_620594	Q76LX8	ATS13_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1000	TSP type-1 6.				cell-matrix adhesion|glycoprotein metabolic process|integrin-mediated signaling pathway|peptide catabolic process|platelet activation|protein processing|proteolysis	cell surface|proteinaceous extracellular matrix	calcium ion binding|integrin binding|metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|skin(2)|ovary(1)|kidney(1)	6				OV - Ovarian serous cystadenocarcinoma(145;1.06e-07)|Epithelial(140;1.28e-06)|all cancers(34;1.46e-05)		GGGCTGCCTCGCCCGGAACCC	0.662													7	29					0	0	1	0	0
DBH	1621	broad.mit.edu	37	9	136516866	136516866	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr9:136516866G>A	uc004cel.2	+	7	1311	c.1302G>A	c.(1300-1302)GTG>GTA	p.V434V		NM_000787	NP_000778	P09172	DOPO_HUMAN	dopamine beta hydroxylase precursor	434	Intragranular (Potential).				hormone biosynthetic process	chromaffin granule lumen|chromaffin granule membrane|extracellular region|integral to membrane|membrane fraction|soluble fraction|transport vesicle membrane	dopamine beta-monooxygenase activity|L-ascorbic acid binding			ovary(2)|central_nervous_system(2)	4				OV - Ovarian serous cystadenocarcinoma(145;2.33e-07)|Epithelial(140;1.5e-06)|all cancers(34;1.66e-05)	Dopamine(DB00988)|Vitamin C(DB00126)	GGGAGATCGTGAACCAGGACA	0.637													6	6					0	0	1	0	0
SARDH	1757	broad.mit.edu	37	9	136555539	136555539	+	Missense_Mutation	SNP	C	T	T	rs142376496	byFrequency	TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr9:136555539C>T	uc004cep.3	-	16	2166	c.2032G>A	c.(2032-2034)GAG>AAG	p.E678K	SARDH_uc004ceo.2_Missense_Mutation_p.E678K|SARDH_uc011mdn.1_Missense_Mutation_p.E678K|SARDH_uc011mdo.1_Missense_Mutation_p.E510K|SARDH_uc004cen.2_Missense_Mutation_p.E106K	NM_001134707	NP_001128179	Q9UL12	SARDH_HUMAN	sarcosine dehydrogenase precursor	678					glycine catabolic process	mitochondrial matrix	aminomethyltransferase activity|sarcosine dehydrogenase activity				0				OV - Ovarian serous cystadenocarcinoma(145;3.21e-07)|Epithelial(140;2.37e-06)|all cancers(34;2.75e-05)		CCCAGGTCCTCGGAGCTGTCG	0.657													26	49					0	0	1	0	0
SARDH	1757	broad.mit.edu	37	9	136597675	136597675	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr9:136597675G>A	uc004cep.3	-	3	514	c.380C>T	c.(379-381)GCC>GTC	p.A127V	SARDH_uc004ceo.2_Missense_Mutation_p.A127V|SARDH_uc011mdn.1_Missense_Mutation_p.A127V|SARDH_uc011mdo.1_5'UTR	NM_001134707	NP_001128179	Q9UL12	SARDH_HUMAN	sarcosine dehydrogenase precursor	127					glycine catabolic process	mitochondrial matrix	aminomethyltransferase activity|sarcosine dehydrogenase activity				0				OV - Ovarian serous cystadenocarcinoma(145;3.21e-07)|Epithelial(140;2.37e-06)|all cancers(34;2.75e-05)		CCGAGTGTGGGCCAGAAGCTC	0.682													35	50					0	0	1	0	0
COL5A1	1289	broad.mit.edu	37	9	137622235	137622235	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr9:137622235G>A	uc004cfe.2	+	7	1460	c.1078G>A	c.(1078-1080)GGG>AGG	p.G360R		NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	360	Nonhelical region.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		CTATGGCGAGGGGGAGGAGAA	0.602													17	69					0	0	1	0	0
COL5A1	1289	broad.mit.edu	37	9	137653784	137653784	+	Missense_Mutation	SNP	C	T	T	rs150890005		TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr9:137653784C>T	uc004cfe.2	+	19	2331	c.1949C>T	c.(1948-1950)CCT>CTT	p.P650L		NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	650	Triple-helical region.			P -> L (in Ref. 4; AA sequence).	axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		GACCCTGGTCCTTCCGGCCCA	0.572													18	68					0	0	1	0	0
FCN2	2220	broad.mit.edu	37	9	137777099	137777099	+	Nonsense_Mutation	SNP	A	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr9:137777099A>T	uc004cfg.1	+	5	326	c.316A>T	c.(316-318)AAG>TAG	p.K106*	FCN2_uc004cfh.1_Nonsense_Mutation_p.K68*	NM_004108	NP_004099	Q15485	FCN2_HUMAN	ficolin 2 isoform a precursor	106	Fibrinogen C-terminal.				complement activation, lectin pathway|opsonization|signal transduction	collagen|extracellular space	antigen binding|calcium ion binding|calcium-dependent protein binding|receptor binding|sugar binding			large_intestine(1)	1		Myeloproliferative disorder(178;0.0333)		OV - Ovarian serous cystadenocarcinoma(145;3.58e-08)|Epithelial(140;6.41e-08)|all cancers(34;3.96e-07)		GCGTACCTGCAAGGACCTGCT	0.667													23	31					0	0	1	0	0
FCN2	2220	broad.mit.edu	37	9	137777101	137777101	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr9:137777101G>A	uc004cfg.1	+	5	328	c.318G>A	c.(316-318)AAG>AAA	p.K106K	FCN2_uc004cfh.1_Silent_p.K68K	NM_004108	NP_004099	Q15485	FCN2_HUMAN	ficolin 2 isoform a precursor	106	Fibrinogen C-terminal.				complement activation, lectin pathway|opsonization|signal transduction	collagen|extracellular space	antigen binding|calcium ion binding|calcium-dependent protein binding|receptor binding|sugar binding			large_intestine(1)	1		Myeloproliferative disorder(178;0.0333)		OV - Ovarian serous cystadenocarcinoma(145;3.58e-08)|Epithelial(140;6.41e-08)|all cancers(34;3.96e-07)		GTACCTGCAAGGACCTGCTAG	0.662													24	32					0	0	1	0	0
GLT6D1	360203	broad.mit.edu	37	9	138516106	138516106	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr9:138516106C>T	uc010nbd.1	-	5	922	c.668G>A	c.(667-669)GGA>GAA	p.G223E		NM_182974	NP_892019	Q7Z4J2	GL6D1_HUMAN	glycosyltransferase 6 domain containing 1	223	Lumenal (Potential).				carbohydrate metabolic process	integral to membrane	transferase activity, transferring hexosyl groups			ovary(1)	1		Myeloproliferative disorder(178;0.0821)		OV - Ovarian serous cystadenocarcinoma(145;4.3e-07)|Epithelial(140;1.58e-06)|all cancers(34;5.36e-05)		ATAGAAATCTCCCTGTCCAAA	0.453													38	46					0	0	1	0	0
ABCA2	20	broad.mit.edu	37	9	139910162	139910162	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr9:139910162C>T	uc011mem.1	-	22	3624	c.3476G>A	c.(3475-3477)CGC>CAC	p.R1159H	ABCA2_uc011mel.1_Missense_Mutation_p.R1160H|ABCA2_uc004ckl.1_Missense_Mutation_p.R1090H|ABCA2_uc004ckm.1_Missense_Mutation_p.R1190H|ABCA2_uc004ckn.1_RNA	NM_001606	NP_001597	Q9BZC7	ABCA2_HUMAN	ATP-binding cassette, sub-family A, member 2	1159	ABC transporter 1.				cholesterol homeostasis|lipid metabolic process|regulation of intracellular cholesterol transport|regulation of transcription from RNA polymerase II promoter|response to drug|response to steroid hormone stimulus	ATP-binding cassette (ABC) transporter complex|cytoplasmic membrane-bounded vesicle|endosome|integral to membrane|microtubule organizing center	ATP binding|ATPase activity, coupled to transmembrane movement of substances				0	all_cancers(76;0.16)	Myeloproliferative disorder(178;0.0511)	STAD - Stomach adenocarcinoma(284;0.123)	OV - Ovarian serous cystadenocarcinoma(145;2.94e-05)|Epithelial(140;0.00048)		CCAGATGGCGCGGCGCGCGTA	0.711													7	10					0	0	1	0	0
MAN1B1	11253	broad.mit.edu	37	9	139994250	139994250	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr9:139994250C>T	uc004cld.2	+	6	868	c.833C>T	c.(832-834)TCC>TTC	p.S278F	MAN1B1_uc004clc.2_Missense_Mutation_p.S179F|MAN1B1_uc011meo.1_Missense_Mutation_p.S179F|MAN1B1_uc011mep.1_Missense_Mutation_p.S278F|MAN1B1_uc010ncc.2_RNA	NM_016219	NP_057303	Q9UKM7	MA1B1_HUMAN	alpha 1,2-mannosidase	278	Lumenal (Potential).				oligosaccharide metabolic process|post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine	endoplasmic reticulum membrane|endoplasmic reticulum quality control compartment|integral to membrane	alpha-mannosidase activity|calcium ion binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity			ovary(1)|central_nervous_system(1)	2	all_cancers(76;0.0926)	Myeloproliferative disorder(178;0.0511)	STAD - Stomach adenocarcinoma(284;0.0878)	OV - Ovarian serous cystadenocarcinoma(145;3.08e-05)|Epithelial(140;0.000513)		AAGCCTGTGTCCAGGTCCTTC	0.547													41	45					0	0	1	0	0
CACNA1B	774	broad.mit.edu	37	9	141008852	141008852	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr9:141008852G>A	uc004cog.2	+	40	5704	c.5559G>A	c.(5557-5559)AAG>AAA	p.K1853K	CACNA1B_uc004coi.2_Silent_p.K1065K	NM_000718	NP_000709	Q00975	CAC1B_HUMAN	calcium channel, voltage-dependent, N type,	1853	Cytoplasmic (Potential).				membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	ATP binding|protein C-terminus binding|voltage-gated calcium channel activity			breast(3)|large_intestine(2)|ovary(1)	6	all_cancers(76;0.166)			OV - Ovarian serous cystadenocarcinoma(145;1.16e-05)|Epithelial(140;0.000476)	Amlodipine(DB00381)|Gabapentin(DB00996)	CAGTGGGGAAGGTTTATGCAG	0.517													3	3					0	0	1	0	0
CSF2RA	1438	broad.mit.edu	37	X	1407772	1407772	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chrX:1407772G>A	uc010nct.2	+	7	786	c.464G>A	c.(463-465)CGA>CAA	p.R155Q	CSF2RA_uc011mhb.1_Missense_Mutation_p.R155Q|CSF2RA_uc004cpq.2_Missense_Mutation_p.R155Q|CSF2RA_uc004cpn.2_Missense_Mutation_p.R155Q|CSF2RA_uc004cpo.2_Missense_Mutation_p.R155Q|CSF2RA_uc010ncu.2_RNA|CSF2RA_uc011mhc.1_Missense_Mutation_p.R22Q|CSF2RA_uc004cpp.2_Missense_Mutation_p.R155Q|CSF2RA_uc010ncv.2_Missense_Mutation_p.R155Q|CSF2RA_uc004cpr.2_Missense_Mutation_p.R155Q	NM_001161529	NP_001155001	P15509	CSF2R_HUMAN	colony stimulating factor 2 receptor alpha chain	155	Extracellular (Potential).					extracellular region|integral to plasma membrane	cytokine receptor activity			ovary(2)	2		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)			Sargramostim(DB00020)	TTGTACATACGAAACTCAAAG	0.393													53	109					0	0	1	0	0
ASMTL	8623	broad.mit.edu	37	X	1553923	1553923	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chrX:1553923G>A	uc004cpx.1	-	5	503	c.392C>T	c.(391-393)TCC>TTC	p.S131F	ASMTL_uc011mhe.1_Missense_Mutation_p.S55F|ASMTL_uc004cpy.1_Missense_Mutation_p.S115F|ASMTL_uc011mhf.1_Missense_Mutation_p.S73F	NM_004192	NP_004183	O95671	ASML_HUMAN	acetylserotonin O-methyltransferase-like	131	MAF-like.				melatonin biosynthetic process	cytoplasm	acetylserotonin O-methyltransferase activity				0		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				ACCTTTGCTGGAGCAGTGGAC	0.612													14	45					0	0	1	0	0
MXRA5	25878	broad.mit.edu	37	X	3229357	3229357	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chrX:3229357C>T	uc004crg.3	-	7	7044	c.6887G>A	c.(6886-6888)GGA>GAA	p.G2296E		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	2296	Ig-like C2-type 7.					extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				CTTGGTGCGTCCACCGCTGTC	0.557													46	13					0	0	1	0	0
ARHGAP6	395	broad.mit.edu	37	X	11204502	11204502	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chrX:11204502C>T	uc004cup.1	-	5	2000	c.1127G>A	c.(1126-1128)CGA>CAA	p.R376Q	ARHGAP6_uc004cuo.1_RNA|ARHGAP6_uc004cur.1_Missense_Mutation_p.R376Q|ARHGAP6_uc004cum.1_Missense_Mutation_p.R173Q|ARHGAP6_uc004cun.1_Missense_Mutation_p.R196Q|ARHGAP6_uc010neb.1_Missense_Mutation_p.R198Q|ARHGAP6_uc011mif.1_Missense_Mutation_p.R173Q	NM_013427	NP_038286	O43182	RHG06_HUMAN	Rho GTPase activating protein 6 isoform 1	376					actin filament polymerization|activation of phospholipase C activity|negative regulation of focal adhesion assembly|negative regulation of stress fiber assembly|Rho protein signal transduction	actin filament|cytosol	phospholipase activator activity|phospholipase binding|Rho GTPase activator activity|SH3 domain binding|SH3/SH2 adaptor activity			urinary_tract(1)|lung(1)	2						TTCTAGTAGTCGAGACTGATT	0.428													63	34					0	0	1	0	0
EGFL6	25975	broad.mit.edu	37	X	13636087	13636087	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chrX:13636087G>A	uc004cvi.2	+	8	1257	c.1017G>A	c.(1015-1017)ATG>ATA	p.M339I	EGFL6_uc004cvj.2_Missense_Mutation_p.M339I|EGFL6_uc011mik.1_Missense_Mutation_p.M240I	NM_015507	NP_056322	Q8IUX8	EGFL6_HUMAN	epidermal growth factor-like protein 6	339	Potential.				cell adhesion|cell cycle|cell differentiation|multicellular organismal development	basement membrane|extracellular space|membrane	calcium ion binding|integrin binding			breast(2)	2						AAGAGAAAATGAAAGAGGGGC	0.448													26	8					0	0	1	0	0
CNKSR2	22866	broad.mit.edu	37	X	21627558	21627558	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chrX:21627558G>A	uc004czx.1	+	20	2551	c.2515G>A	c.(2515-2517)GGG>AGG	p.G839R	CNKSR2_uc004czw.2_Missense_Mutation_p.G839R|CNKSR2_uc011mjn.1_Missense_Mutation_p.G790R|CNKSR2_uc011mjo.1_Missense_Mutation_p.G809R|CNKSR2_uc004czy.2_Missense_Mutation_p.G431R	NM_014927	NP_055742	Q8WXI2	CNKR2_HUMAN	connector enhancer of kinase suppressor of Ras	839					regulation of signal transduction	cytoplasm|membrane	protein binding			large_intestine(1)|lung(1)	2						AAATGGAAATGGGGGCAAGCC	0.532													42	12					0	0	1	0	0
PTCHD1	139411	broad.mit.edu	37	X	23410835	23410835	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chrX:23410835G>A	uc004dal.3	+	3	1208	c.1200G>A	c.(1198-1200)AGG>AGA	p.R400R		NM_173495	NP_775766	Q96NR3	PTHD1_HUMAN	patched domain containing 1	400	SSD.				cognition|smoothened signaling pathway	integral to membrane|plasma membrane	hedgehog receptor activity			ovary(4)|kidney(1)|skin(1)	6						AGGCAGCCAGGATTTTCTGCT	0.468													45	17					0	0	1	0	0
MAGEB2	4113	broad.mit.edu	37	X	30237516	30237516	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chrX:30237516C>T	uc004dbz.2	+	2	922	c.819C>T	c.(817-819)TTC>TTT	p.F273F		NM_002364	NP_002355	O15479	MAGB2_HUMAN	melanoma antigen family B, 2	273	MAGE.						protein binding			ovary(1)	1						GCTTTCAATTCCTGTGGGGTC	0.517													25	5					0	0	1	0	0
FAM47C	442444	broad.mit.edu	37	X	37028486	37028486	+	Missense_Mutation	SNP	C	G	G	rs142735792	byFrequency	TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chrX:37028486C>G	uc004ddl.1	+	1	2017	c.2003C>G	c.(2002-2004)CCG>CGG	p.P668R		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	668										ovary(3)	3						AGTCTCCCCCCGGAGCCCCCC	0.642													30	8					0	0	1	0	0
MAOB	4129	broad.mit.edu	37	X	43639593	43639593	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chrX:43639593C>T	uc004dfz.3	-	10	1251	c.1075G>A	c.(1075-1077)GAA>AAA	p.E359K	MAOB_uc011mkx.1_Missense_Mutation_p.E343K|MAOB_uc011mky.1_Missense_Mutation_p.E343K	NM_000898	NP_000889	P27338	AOFB_HUMAN	monoamine oxidase B	359	Cytoplasmic.				xenobiotic metabolic process	integral to membrane|mitochondrial outer membrane	electron carrier activity|primary amine oxidase activity			ovary(1)|central_nervous_system(1)	2					Amantadine(DB00915)|Bupropion(DB01156)|Carbidopa(DB00190)|Citalopram(DB00215)|Dopamine(DB00988)|Entacapone(DB00494)|Furazolidone(DB00614)|Ginkgo biloba(DB01381)|Ibuprofen(DB01050)|Imipramine(DB00458)|Iproniazid(DB04818)|Isocarboxazid(DB01247)|Levodopa(DB01235)|Maprotiline(DB00934)|Meclizine(DB00737)|Moclobemide(DB01171)|Nicotine(DB00184)|Pargyline(DB01626)|Phenelzine(DB00780)|Phentermine(DB00191)|Rasagiline(DB01367)|Selegiline(DB01037)|Tranylcypromine(DB00752)	TGTTACCTTTCCTCTTTGGTA	0.234													9	3					0	0	1	0	0
MAOB	4129	broad.mit.edu	37	X	43640713	43640713	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chrX:43640713T>C	uc004dfz.3	-	9	1183	c.1007A>G	c.(1006-1008)AAC>AGC	p.N336S	MAOB_uc011mkx.1_Missense_Mutation_p.N320S|MAOB_uc011mky.1_Missense_Mutation_p.N320S	NM_000898	NP_000889	P27338	AOFB_HUMAN	monoamine oxidase B	336	Cytoplasmic.				xenobiotic metabolic process	integral to membrane|mitochondrial outer membrane	electron carrier activity|primary amine oxidase activity			ovary(1)|central_nervous_system(1)	2					Amantadine(DB00915)|Bupropion(DB01156)|Carbidopa(DB00190)|Citalopram(DB00215)|Dopamine(DB00988)|Entacapone(DB00494)|Furazolidone(DB00614)|Ginkgo biloba(DB01381)|Ibuprofen(DB01050)|Imipramine(DB00458)|Iproniazid(DB04818)|Isocarboxazid(DB01247)|Levodopa(DB01235)|Maprotiline(DB00934)|Meclizine(DB00737)|Moclobemide(DB01171)|Nicotine(DB00184)|Pargyline(DB01626)|Phenelzine(DB00780)|Phentermine(DB00191)|Rasagiline(DB01367)|Selegiline(DB01037)|Tranylcypromine(DB00752)	GGCAGCATAGTTGCCTTCAGG	0.408													11	8					0	0	1	0	0
CXorf36	79742	broad.mit.edu	37	X	45010908	45010908	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chrX:45010908C>T	uc004dgg.2	-	5	1366	c.1291G>A	c.(1291-1293)GAT>AAT	p.D431N		NM_176819	NP_789789	Q9H7Y0	CX036_HUMAN	hypothetical protein LOC79742 isoform 1	431						extracellular region				lung(1)	1						CAGAACTTATCGTTATATTTG	0.527													43	21					0	0	1	0	0
TIMP1	7076	broad.mit.edu	37	X	47442821	47442821	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chrX:47442821C>T	uc004dif.2	+	2	199	c.7C>T	c.(7-9)CCC>TCC	p.P3S	SYN1_uc004did.2_Intron|SYN1_uc004die.2_Intron|TIMP1_uc011mlr.1_5'UTR|TIMP1_uc010nht.1_5'UTR	NM_003254	NP_003245	P01033	TIMP1_HUMAN	tissue inhibitor of metalloproteinase 1	3					erythrocyte maturation|negative regulation of membrane protein ectodomain proteolysis|platelet activation|platelet degranulation|positive regulation of cell proliferation	platelet alpha granule lumen	metal ion binding|metalloendopeptidase inhibitor activity|protein binding				0						CACCATGGCCCCCTTTGAGCC	0.667													27	11					0	0	1	0	0
CFP	5199	broad.mit.edu	37	X	47487635	47487635	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chrX:47487635G>A	uc004dig.3	-	3	395	c.269C>T	c.(268-270)TCG>TTG	p.S90L	CFP_uc004dih.2_Missense_Mutation_p.S90L|CFP_uc004dii.1_Missense_Mutation_p.S26L|CFP_uc010nhu.2_Missense_Mutation_p.S90L	NM_001145252	NP_001138724	P27918	PROP_HUMAN	complement factor properdin precursor	90	TSP type-1 1.				complement activation, alternative pathway|defense response to bacterium	extracellular space				breast(2)|lung(1)	3						GCACGTCACCGAACAGGGGGC	0.627													3	8					0	0	1	0	0
ZNF182	7569	broad.mit.edu	37	X	47836085	47836085	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chrX:47836085G>A	uc004dir.2	-	7	1747	c.1401C>T	c.(1399-1401)TTC>TTT	p.F467F	ZNF182_uc004dis.2_Silent_p.F448F|ZNF182_uc004dit.2_Silent_p.F467F|ZNF182_uc011mlu.1_Silent_p.F447F	NM_006962	NP_008893	P17025	ZN182_HUMAN	zinc finger protein 21 isoform 1	467	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|lung(1)	3						ACTTCTGAGAGAAGGCTTTCT	0.408													18	7					0	0	1	0	0
SSX5	6758	broad.mit.edu	37	X	48047157	48047157	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chrX:48047157C>T	uc004dja.1	-	7	530	c.477G>A	c.(475-477)AGG>AGA	p.R159R	SSX5_uc004diz.1_Silent_p.R200R	NM_175723	NP_783729	O60225	SSX5_HUMAN	synovial sarcoma, X breakpoint 5 isoform b	159					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding				0						CATGTTTCCCCCTTTTGGGTC	0.483													127	53					0	0	1	0	0
ZC3H12B	340554	broad.mit.edu	37	X	64721993	64721993	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chrX:64721993C>T	uc010nko.2	+	5	1391	c.1382C>T	c.(1381-1383)CCC>CTC	p.P461L		NM_001010888	NP_001010888	Q5HYM0	ZC12B_HUMAN	zinc finger CCCH-type containing 12B	461							endonuclease activity|nucleic acid binding|zinc ion binding			lung(1)|kidney(1)|pancreas(1)	3						CTAAGTGTTCCCACAATCCCA	0.602													46	20					0	0	1	0	0
HEPH	9843	broad.mit.edu	37	X	65413476	65413476	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chrX:65413476C>T	uc011moz.1	+	8	1434	c.1374C>T	c.(1372-1374)ATC>ATT	p.I458I	HEPH_uc004dwn.2_Silent_p.I458I|HEPH_uc004dwo.2_Silent_p.I188I|HEPH_uc010nkr.2_Silent_p.I458I|HEPH_uc011mpa.1_Silent_p.I458I	NM_138737	NP_620074	Q9BQS7	HEPH_HUMAN	hephaestin isoform a	455	Extracellular (Potential).|Plastocyanin-like 3.				cellular iron ion homeostasis|copper ion transport|transmembrane transport	integral to membrane|plasma membrane	copper ion binding|oxidoreductase activity			lung(5)|ovary(4)	9						ATCTTGGAATCCTGGGTGAGG	0.423													13	1					0	0	1	0	0
STARD8	9754	broad.mit.edu	37	X	67941949	67941949	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chrX:67941949G>A	uc004dxa.2	+	10	2652	c.2280G>A	c.(2278-2280)ATG>ATA	p.M760I	STARD8_uc004dxb.2_Missense_Mutation_p.M840I|STARD8_uc004dxc.3_Missense_Mutation_p.M760I	NM_014725	NP_055540	Q92502	STAR8_HUMAN	StAR-related lipid transfer (START) domain	760	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|focal adhesion	GTPase activator activity			breast(3)|ovary(2)|pancreas(1)	6						GTGACAACATGGCAGCCACCC	0.562													10	8					0	0	1	0	0
XIST	7503	broad.mit.edu	37	X	73053119	73053119	+	RNA	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chrX:73053119G>A	uc004ebm.1	-	3		c.11527C>T				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						ATTAGCTGGAGCTTGGCCAGA	0.423													30	14					0	0	1	0	0
KIAA2022	340533	broad.mit.edu	37	X	73961408	73961408	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chrX:73961408G>A	uc004eby.2	-	3	3601	c.2984C>T	c.(2983-2985)TCA>TTA	p.S995L		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	995					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						TGGGGCCATTGAATCAAAGCT	0.443													21	4					0	0	1	0	0
KIAA2022	340533	broad.mit.edu	37	X	73962420	73962420	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chrX:73962420C>T	uc004eby.2	-	3	2589	c.1972G>A	c.(1972-1974)GAT>AAT	p.D658N		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	658					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						TGCCTCTGATCATTACATAAT	0.413													10	2					0	0	1	0	0
KIAA2022	340533	broad.mit.edu	37	X	73963930	73963930	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chrX:73963930C>A	uc004eby.2	-	3	1079	c.462G>T	c.(460-462)AAG>AAT	p.K154N		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	154					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						CTACTGCATCCTTGGATTCCA	0.473													42	13					6.21074e-16	6.2925e-16	1	1	0
ZNF711	7552	broad.mit.edu	37	X	84520132	84520132	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chrX:84520132G>A	uc004eeo.2	+	6	1134	c.787G>A	c.(787-789)GAA>AAA	p.E263K	ZNF711_uc004eep.2_Missense_Mutation_p.E263K|ZNF711_uc004eeq.2_Missense_Mutation_p.E263K|ZNF711_uc011mqy.1_5'UTR	NM_021998	NP_068838	Q9Y462	ZN711_HUMAN	zinc finger protein 711	263					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding|sequence-specific DNA binding|zinc ion binding			ovary(3)|skin(1)	4						AGGTGGAACAGAAATTGTCAC	0.363													13	3					0	0	1	0	0
KLHL4	56062	broad.mit.edu	37	X	86869525	86869525	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chrX:86869525G>A	uc004efb.2	+	3	861	c.679G>A	c.(679-681)GGA>AGA	p.G227R	KLHL4_uc004efa.2_Missense_Mutation_p.G227R	NM_019117	NP_061990	Q9C0H6	KLHL4_HUMAN	kelch-like 4 isoform 1	227	BTB.					cytoplasm|microtubule cytoskeleton|nucleolus	actin binding			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5						CAGGATGGAAGGAGTAGATCC	0.398													9	5					0	0	1	0	0
CPXCR1	53336	broad.mit.edu	37	X	88008524	88008524	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chrX:88008524G>A	uc004efd.3	+	3	368	c.109G>A	c.(109-111)GAT>AAT	p.D37N	CPXCR1_uc004efc.3_Missense_Mutation_p.D37N	NM_033048	NP_149037	Q8N123	CPXCR_HUMAN	CPX chromosome region, candidate 1	37						intracellular	zinc ion binding			ovary(3)	3						TCCATCTGCTGATCCCAATAT	0.438													11	7					0	0	1	0	0
PCDH11X	27328	broad.mit.edu	37	X	91132451	91132452	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chrX:91132451_91132452CC>TT	uc004efk.1	+	2	2057_2058	c.1212_1213CC>TT	c.(1210-1215)ATCCCT>ATTTCT	p.P405S	PCDH11X_uc004efl.1_Missense_Mutation_p.P405S|PCDH11X_uc004efo.1_Missense_Mutation_p.P405S|PCDH11X_uc010nmv.1_Missense_Mutation_p.P405S|PCDH11X_uc004efm.1_Missense_Mutation_p.P405S|PCDH11X_uc004efn.1_Missense_Mutation_p.P405S|PCDH11X_uc004efh.1_Missense_Mutation_p.P405S|PCDH11X_uc004efj.1_Missense_Mutation_p.P405S	NM_032968	NP_116750	Q9BZA7	PC11X_HUMAN	protocadherin 11 X-linked isoform c	405	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to plasma membrane	calcium ion binding			large_intestine(2)	2						ATCATGAAATCCCTTTCAGATT	0.416													4	22					0	0	1	0	0
TNMD	64102	broad.mit.edu	37	X	99848968	99848968	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chrX:99848968G>A	uc004efy.3	+	3	483	c.257G>A	c.(256-258)AGA>AAA	p.R86K	TNMD_uc004efz.2_Missense_Mutation_p.R86K	NM_022144	NP_071427	Q9H2S6	TNMD_HUMAN	tenomodulin	86	Extracellular (Potential).					integral to membrane				central_nervous_system(1)	1						CCTGTGACCAGAACTGAAATA	0.413													26	10					0	0	1	0	0
NOX1	27035	broad.mit.edu	37	X	100118199	100118199	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chrX:100118199G>A	uc004egj.2	-	4	492	c.286C>T	c.(286-288)CAC>TAC	p.H96Y	uc010nnf.2_Intron|NOX1_uc004egl.3_Missense_Mutation_p.H96Y|NOX1_uc010nne.2_Missense_Mutation_p.H59Y	NM_007052	NP_008983	Q9Y5S8	NOX1_HUMAN	NADPH oxidase 1 isoform long	96	Cytoplasmic (Potential).|Ferric oxidoreductase.				angiogenesis|cell migration|electron transport chain|FADH2 metabolic process|hydrogen peroxide metabolic process|inflammatory response|intracellular pH elevation|positive regulation of integrin biosynthetic process|positive regulation of smooth muscle cell proliferation|positive regulation vascular endothelial growth factor production|respiratory burst|response to pH|signal transduction|superoxide anion generation	cell junction|early endosome|invadopodium membrane|NADPH oxidase complex	electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|Rac GTPase binding|superoxide-generating NADPH oxidase activity|voltage-gated proton channel activity			ovary(1)	1						GTGAGGTTGTGATCCAATTGC	0.448													92	29					0	0	1	0	0
TAF7L	54457	broad.mit.edu	37	X	100532675	100532675	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chrX:100532675C>T	uc004ehb.2	-	9	880	c.868G>A	c.(868-870)GAA>AAA	p.E290K	TAF7L_uc004eha.2_Missense_Mutation_p.E204K|TAF7L_uc004ehc.1_Missense_Mutation_p.E204K	NM_024885	NP_079161	Q5H9L4	TAF7L_HUMAN	TATA box binding protein-associated factor, RNA	290					cell differentiation|multicellular organismal development|regulation of transcription, DNA-dependent|spermatogenesis|transcription initiation from RNA polymerase II promoter	cytoplasm|transcription factor TFIID complex	binding			breast(1)	1						CTTTCTATTTCCTTGGTTCCA	0.468													82	22					0	0	1	0	0
BTK	695	broad.mit.edu	37	X	100617210	100617210	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chrX:100617210G>A	uc004ehg.2	-	7	732	c.539C>T	c.(538-540)TCT>TTT	p.S180F	BTK_uc010nnn.2_Missense_Mutation_p.S180F|BTK_uc010nno.2_Missense_Mutation_p.S214F|BTK_uc004ehi.2_Missense_Mutation_p.S180F	NM_000061	NP_000052	Q06187	BTK_HUMAN	Bruton agammaglobulinemia tyrosine kinase	180					calcium-mediated signaling|induction of apoptosis by extracellular signals|mesoderm development	cytosol|membrane raft|nucleus|plasma membrane	ATP binding|identical protein binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity|phosphatidylinositol-3,4,5-trisphosphate binding			lung(3)|central_nervous_system(2)|ovary(1)	6						CTTCCGGTGAGAACTCCCAGG	0.448									Agammaglobulinemia_X-linked				37	15					0	0	1	0	0
WBP5	51186	broad.mit.edu	37	X	102612716	102612716	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chrX:102612716T>C	uc004ekd.2	+	3	405	c.104T>C	c.(103-105)CTA>CCA	p.L35P	WBP5_uc004eke.2_Missense_Mutation_p.L35P|WBP5_uc004ekf.2_Missense_Mutation_p.L35P|WBP5_uc004ekg.2_Missense_Mutation_p.L35P	NM_001006612	NP_001006613	Q9UHQ7	WPB5_HUMAN	WW domain binding protein 5	35	Glu-rich.										0						GAGGAGAAGCTAGAGGAGGAG	0.413													4	25					0	0	1	0	0
FAM199X	139231	broad.mit.edu	37	X	103432939	103432939	+	Missense_Mutation	SNP	T	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chrX:103432939T>A	uc004elw.2	+	5	1114	c.948T>A	c.(946-948)AGT>AGA	p.S316R	FAM199X_uc004elx.2_Intron	NM_207318	NP_997201	Q6PEV8	F199X_HUMAN	hypothetical protein LOC139231	316	Ser-rich.									ovary(1)	1						GAGCACACAGTGACAGCAACC	0.463													30	91					0	0	1	0	0
NRK	203447	broad.mit.edu	37	X	105075050	105075050	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chrX:105075050C>T	uc004emd.2	+	2	364	c.61C>T	c.(61-63)CCA>TCA	p.P21S	NRK_uc010npc.1_5'UTR	NM_198465	NP_940867	Q7Z2Y5	NRK_HUMAN	Nik related kinase	21							ATP binding|protein serine/threonine kinase activity|small GTPase regulator activity			breast(7)|ovary(3)|lung(2)|large_intestine(1)|central_nervous_system(1)	14						TTTGCAGGATCCAACTGGAAT	0.254										HNSCC(51;0.14)			25	15					0	0	1	0	0
CAPN6	827	broad.mit.edu	37	X	110491825	110491825	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chrX:110491825T>C	uc004epc.1	-	10	1624	c.1456A>G	c.(1456-1458)ATC>GTC	p.I486V	CAPN6_uc011msu.1_Missense_Mutation_p.I231V	NM_014289	NP_055104	Q9Y6Q1	CAN6_HUMAN	calpain 6	486	Domain III.				microtubule bundle formation|proteolysis|regulation of cytoskeleton organization	perinuclear region of cytoplasm|spindle microtubule	calcium-dependent cysteine-type endopeptidase activity|microtubule binding			ovary(2)|upper_aerodigestive_tract(1)|large_intestine(1)|lung(1)|skin(1)	6						TCAGAGAAGATTCTCAGGAGA	0.512													13	5					0	0	1	0	0
IL13RA2	3598	broad.mit.edu	37	X	114251824	114251824	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chrX:114251824G>A	uc004epx.2	-	2	134	c.9C>T	c.(7-9)TTC>TTT	p.F3F	IL13RA2_uc010nqd.1_Silent_p.F3F	NM_000640	NP_000631	Q14627	I13R2_HUMAN	interleukin 13 receptor, alpha 2 precursor	3						extracellular space|integral to membrane|soluble fraction	cytokine receptor activity			upper_aerodigestive_tract(1)|ovary(1)|lung(1)	3						CCAAGCAAACGAAAGCCATTT	0.328													27	13					0	0	1	0	0
SLC6A14	11254	broad.mit.edu	37	X	115586161	115586161	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chrX:115586161C>T	uc004eqi.2	+	11	1527	c.1423C>T	c.(1423-1425)CAT>TAT	p.H475Y		NM_007231	NP_009162	Q9UN76	S6A14_HUMAN	solute carrier family 6 (amino acid	475	Helical; Name=9; (Potential).				cellular amino acid metabolic process|response to toxin	integral to membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			ovary(2)|pancreas(1)	3					L-Proline(DB00172)	TTACTGGGTTCATCTGATTGA	0.308													34	10					0	0	1	0	0
RHOXF2B	727940	broad.mit.edu	37	X	119293221	119293221	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chrX:119293221G>A	uc004esl.3	+	2	570	c.380G>A	c.(379-381)GGG>GAG	p.G127E		NM_001099685	NP_001093155	P0C7M4	RHF2B_HUMAN	Rhox homeobox family, member 2B	127						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						GCCGTCGGGGGGCTGGAGCCT	0.662													9	15					0	0	1	0	0
ATP1B4	23439	broad.mit.edu	37	X	119500506	119500506	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chrX:119500506G>A	uc004esr.2	+	2	274	c.190G>A	c.(190-192)GAA>AAA	p.E64K	ATP1B4_uc004esq.2_Missense_Mutation_p.E64K|ATP1B4_uc011mtx.1_Missense_Mutation_p.E64K|ATP1B4_uc011mty.1_Missense_Mutation_p.E64K	NM_001142447	NP_001135919	Q9UN42	AT1B4_HUMAN	ATPase, (Na+)/K+ transporting, beta 4	64	Glu-rich.|Nuclear (Potential).				ATP biosynthetic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to plasma membrane|nuclear inner membrane	sodium:potassium-exchanging ATPase activity			ovary(1)|skin(1)	2						agaagaggaggaagaggagga	0.353													14	13					0	0	1	0	0
THOC2	57187	broad.mit.edu	37	X	122754787	122754787	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chrX:122754787G>A	uc004etu.2	-	32	4278	c.4246C>T	c.(4246-4248)CCT>TCT	p.P1416S	THOC2_uc010nqt.1_RNA|THOC2_uc004etw.1_Missense_Mutation_p.P237S	NM_001081550	NP_001075019	Q8NI27	THOC2_HUMAN	THO complex 2	1416	Lys-rich.				intronless viral mRNA export from host nucleus|mRNA processing|RNA splicing	THO complex part of transcription export complex	protein binding|RNA binding			ovary(3)	3						GATGGAGAAGGGTGAGTATCA	0.403													101	33					0	0	1	0	0
DCAF12L2	340578	broad.mit.edu	37	X	125299163	125299163	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chrX:125299163C>T	uc004euk.1	-	1	772	c.745G>A	c.(745-747)GAT>AAT	p.D249N		NM_001013628	NP_001013650	Q5VW00	DC122_HUMAN	DDB1 and CUL4 associated factor 12-like 2	249										lung(2)|skin(2)|large_intestine(1)|pancreas(1)|ovary(1)	7						GCCTCCACATCCCTCGGACGG	0.632													15	12					0	0	1	0	0
ARHGAP36	158763	broad.mit.edu	37	X	130215693	130215693	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chrX:130215693C>T	uc004evz.2	+	2	399	c.54C>T	c.(52-54)ATC>ATT	p.I18I	ARHGAP36_uc004ewa.2_Intron|ARHGAP36_uc004ewb.2_Intron|ARHGAP36_uc004ewc.2_5'Flank	NM_144967	NP_659404	Q6ZRI8	RHG36_HUMAN	hypothetical protein LOC158763 precursor	18					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(3)	3						GCCCCAGAATCATGCCCCCTT	0.522													91	39					0	0	1	0	0
GPC3	2719	broad.mit.edu	37	X	132833929	132833929	+	Missense_Mutation	SNP	C	T	T	rs145280221	byFrequency	TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chrX:132833929C>T	uc004exe.1	-	4	1350	c.1160G>A	c.(1159-1161)CGA>CAA	p.R387Q	GPC3_uc004exd.1_Missense_Mutation_p.R259Q|GPC3_uc010nrn.1_Missense_Mutation_p.R410Q|GPC3_uc011mvh.1_Missense_Mutation_p.R371Q|GPC3_uc010nro.1_Missense_Mutation_p.R333Q|GPC3_uc010nrp.1_Missense_Mutation_p.R259Q	NM_004484	NP_004475	P51654	GPC3_HUMAN	glypican 3 isoform 2 precursor	387						extracellular space|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding|peptidyl-dipeptidase inhibitor activity			lung(2)|prostate(1)|breast(1)|skin(1)	5	Acute lymphoblastic leukemia(192;0.000127)					TCACCTTCTTCGGCTGGATAA	0.318			T|D|Mis|N|F|S			Wilms tumour			Simpson-Golabi-Behmel_syndrome				35	9					0	0	1	0	0
CDR1	1038	broad.mit.edu	37	X	139866217	139866217	+	Silent	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chrX:139866217G>A	uc004fbg.1	-	1	507	c.315C>T	c.(313-315)TTC>TTT	p.F105F	uc004fbf.1_RNA	NM_004065	NP_004056	P51861	CDR1_HUMAN	cerebellar degeneration-related protein 1,	105	18.|23 X 6 AA approximate repeats.										0	Acute lymphoblastic leukemia(192;7.65e-05)	Lung SC(4;0.051)				GGTCTTCCAGGAAATCCGTGT	0.448													63	21					0	0	1	0	0
MAGEC1	9947	broad.mit.edu	37	X	140994042	140994042	+	Silent	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chrX:140994042C>T	uc004fbt.2	+	4	1138	c.852C>T	c.(850-852)TTC>TTT	p.F284F	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	284							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					TGAGTCTTTTCCAGAGTTCCC	0.493										HNSCC(15;0.026)			74	45					0	0	1	0	0
MAGEA4	4103	broad.mit.edu	37	X	151092603	151092603	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chrX:151092603C>T	uc004fez.2	+	3	623	c.467C>T	c.(466-468)TCC>TTC	p.S156F	MAGEA4_uc004ffa.2_Missense_Mutation_p.S156F|MAGEA4_uc004ffb.2_Missense_Mutation_p.S156F|MAGEA4_uc004ffc.2_Missense_Mutation_p.S156F|MAGEA4_uc004ffd.2_Missense_Mutation_p.S156F	NM_002362	NP_002353	P43358	MAGA4_HUMAN	melanoma antigen family A, 4	156	MAGE.						protein binding			ovary(1)|breast(1)|central_nervous_system(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					GGCAAAGCCTCCGAGTCCCTG	0.527													61	17					0	0	1	0	0
L1CAM	3897	broad.mit.edu	37	X	153132898	153132898	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chrX:153132898G>A	uc004fjb.2	-	16	2158	c.2050C>T	c.(2050-2052)CAC>TAC	p.H684Y	L1CAM_uc004fjc.2_Missense_Mutation_p.H684Y|L1CAM_uc010nuo.2_Missense_Mutation_p.H679Y	NM_000425	NP_000416	P32004	L1CAM_HUMAN	L1 cell adhesion molecule isoform 1 precursor	684	Fibronectin type-III 1.|Extracellular (Potential).				axon guidance|blood coagulation|cell death|leukocyte migration	integral to membrane				ovary(8)|central_nervous_system(1)	9	all_cancers(53;6.72e-15)|all_epithelial(53;3.19e-09)|all_lung(58;3.39e-06)|all_hematologic(71;4.25e-06)|Lung NSC(58;4.7e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					AAGGTGTAGTGGACATAGGGC	0.547													96	35					0	0	1	0	0
PCDH11Y	83259	broad.mit.edu	37	Y	4966928	4966928	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chrY:4966928C>T	uc004fqo.2	+	2	2043	c.1309C>T	c.(1309-1311)CCT>TCT	p.P437S	PCDH11Y_uc010nwg.1_Missense_Mutation_p.P426S|PCDH11Y_uc004fql.1_Missense_Mutation_p.P426S|PCDH11Y_uc004fqm.1_Missense_Mutation_p.P426S|PCDH11Y_uc004fqn.1_Missense_Mutation_p.P437S|PCDH11Y_uc004fqp.1_Missense_Mutation_p.P208S	NM_032973	NP_116755	Q9BZA8	PC11Y_HUMAN	protocadherin 11 Y-linked isoform c	437	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0						TCATGAAATTCCTTTCAGATT	0.403													24	68					0	0	1	0	0
RBMY2EP	159125	broad.mit.edu	37	Y	23562899	23562899	+	RNA	SNP	C	T	T			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chrY:23562899C>T	uc004fun.1	-	2		c.100G>A				NR_001574				Homo sapiens RNA binding motif protein, Y-linked, family 2, member E pseudogene (RBMY2EP), non-coding RNA.												0						TGGTTCGATCCTTTATCAAAA	0.338													9	7					0	0	1	0	0
TNNI3K	51086	broad.mit.edu	37	1	74905192	74905192	+	Frame_Shift_Del	DEL	C	-	-			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr1:74905192delC	uc001dgf.1	+	20	1948	c.1897delC	c.(1897-1899)CCTfs	p.P633fs	TNNI3K_uc001dgd.2_Frame_Shift_Del_p.P734fs|TNNI3K_uc001dge.1_Frame_Shift_Del_p.P734fs	NM_015978	NP_057062	Q59H18	TNI3K_HUMAN	TNNI3 interacting kinase isoform b	633	Protein kinase.					cytoplasm|nucleus	ATP binding|metal ion binding|protein C-terminus binding|protein serine/threonine kinase activity|troponin I binding			large_intestine(4)|lung(3)|ovary(2)|upper_aerodigestive_tract(1)	10						TTGGATGGCTCCTGAGGTGTT	0.473													27	33	---	---	---	---					
ZDHHC13	54503	broad.mit.edu	37	11	19180492	19180493	+	Frame_Shift_Del	DEL	TG	-	-			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr11:19180492_19180493delTG	uc001mpi.2	+	10	1118_1119	c.1013_1014delTG	c.(1012-1014)TTGfs	p.L338fs	ZDHHC13_uc001mpj.2_Frame_Shift_Del_p.L208fs	NM_019028	NP_061901	Q8IUH4	ZDH13_HUMAN	zinc finger, DHHC domain containing 13 isoform	338	Helical; (Potential).|Phe-rich.				positive regulation of I-kappaB kinase/NF-kappaB cascade	Golgi-associated vesicle membrane|integral to membrane	magnesium ion transmembrane transporter activity|palmitoyltransferase activity|signal transducer activity|zinc ion binding				0						TTTAGGTTCTTGGTTGGGTATA	0.248													2	4	---	---	---	---					
MIR615	693200	broad.mit.edu	37	12	54427745	54427746	+	RNA	INS	-	G	G			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:54427745_54427746insG	hsa-mir-615|MI0003628	+			c.12_13insG			HOXC5_uc001set.2_Intron|HOXC4_uc001seu.2_Intron|HOXC5_uc001sew.2_Intron																	0						TCGGGAGGGGCGGGAGGGGGGT	0.743													2	4	---	---	---	---					
SFRS8	6433	broad.mit.edu	37	12	132281734	132281736	+	In_Frame_Del	DEL	AGA	-	-			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr12:132281734_132281736delAGA	uc001uja.1	+	16	2686_2688	c.2546_2548delAGA	c.(2545-2550)GAGAAG>GAG	p.K853del	SFRS8_uc010tbn.1_In_Frame_Del_p.K905del	NM_004592	NP_004583	Q12872	SFSWA_HUMAN	splicing factor, arginine/serine-rich 8	853	Poly-Lys.|Arg/Ser-rich (RS domain).				mRNA splice site selection|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding|RNA binding				0	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;3.44e-07)|Epithelial(86;2.94e-06)|all cancers(50;4.82e-05)		AGTCCCCACGAGAAGAAGAAGAA	0.493													7	170	---	---	---	---					
ARHGAP17	55114	broad.mit.edu	37	16	24946954	24946954	+	Frame_Shift_Del	DEL	G	-	-			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chr16:24946954delG	uc002dnb.2	-	18	1824	c.1731delC	c.(1729-1731)CCCfs	p.P577fs	ARHGAP17_uc002dmy.2_Frame_Shift_Del_p.P22fs|ARHGAP17_uc002dmz.2_Frame_Shift_Del_p.P101fs|ARHGAP17_uc002dna.2_Frame_Shift_Del_p.P304fs|ARHGAP17_uc002dnc.2_Frame_Shift_Del_p.P499fs|ARHGAP17_uc010vcf.1_Frame_Shift_Del_p.P320fs	NM_001006634	NP_001006635	Q68EM7	RHG17_HUMAN	nadrin isoform 1	577	Pro-rich.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|tight junction	GTPase activator activity|SH3 domain binding				0				GBM - Glioblastoma multiforme(48;0.0407)		CCTTCGGTTTGGGAGGACTAA	0.483													16	56	---	---	---	---					
ZFX	7543	broad.mit.edu	37	X	24197828	24197828	+	Frame_Shift_Del	DEL	T	-	-			TCGA-D3-A2JF-06A-11D-A196-08	TCGA-D3-A2JF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	85abe195-28cc-4440-8de8-d43704ea04ad	c3e3213a-33de-4922-aabc-272ef0c84173	g.chrX:24197828delT	uc004dbf.2	+	4	845	c.587delT	c.(586-588)ATCfs	p.I196fs	ZFX_uc004dbd.1_Frame_Shift_Del_p.I196fs|ZFX_uc010nfx.1_Intron|ZFX_uc004dbe.2_Frame_Shift_Del_p.I196fs|ZFX_uc011mjv.1_Frame_Shift_Del_p.I235fs|ZFX_uc010nfy.1_Frame_Shift_Del_p.I196fs	NM_003410	NP_003401	P17010	ZFX_HUMAN	zinc finger protein, X-linked	196					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|transcription coactivator activity|zinc ion binding			ovary(2)	2						GCCAATGGGATCCCTGTGGAC	0.453													56	44	---	---	---	---					
