Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
MORN1	79906	broad.mit.edu	37	1	2267927	2267927	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr1:2267927C>T	uc001ajb.1	-	12	1252	c.1231G>A	c.(1231-1233)GAG>AAG	p.E411K	MORN1_uc009vld.2_Missense_Mutation_p.E387K	NM_024848	NP_079124	Q5T089	MORN1_HUMAN	MORN repeat containing 1	411										ovary(2)|central_nervous_system(1)	3	all_cancers(77;0.000194)|all_epithelial(69;9.96e-05)|all_lung(157;0.016)|Lung NSC(156;0.0376)|Ovarian(185;0.0634)	all_epithelial(116;3.3e-15)|all_lung(118;1.15e-06)|Lung NSC(185;6.26e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Medulloblastoma(700;0.151)|Lung SC(97;0.217)		Epithelial(90;2.21e-37)|OV - Ovarian serous cystadenocarcinoma(86;5.01e-23)|GBM - Glioblastoma multiforme(42;2.8e-08)|Colorectal(212;5.97e-05)|COAD - Colon adenocarcinoma(227;0.000241)|Kidney(185;0.00137)|BRCA - Breast invasive adenocarcinoma(365;0.00488)|STAD - Stomach adenocarcinoma(132;0.00665)|KIRC - Kidney renal clear cell carcinoma(229;0.0203)|Lung(427;0.212)		CCAGGAGGCTCCTGTGCCGTG	0.657000													9	20					0	0	0.000673444	0	0
VPS13D	55187	broad.mit.edu	37	1	12353695	12353695	+	Silent	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr1:12353695C>T	uc001atv.2	+	24	6108	c.5967C>T	c.(5965-5967)TTC>TTT	p.F1989F	VPS13D_uc001atw.2_Silent_p.F1989F|VPS13D_uc001atx.2_Silent_p.F1177F	NM_015378	NP_056193	Q5THJ4	VP13D_HUMAN	vacuolar protein sorting 13D isoform 1	1989					protein localization					ovary(4)|pancreas(1)	5	Ovarian(185;0.249)	Lung NSC(185;4.08e-05)|all_lung(284;4.55e-05)|Renal(390;0.000147)|Colorectal(325;0.00058)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0327)|Colorectal(212;4.63e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000289)|COAD - Colon adenocarcinoma(227;0.000801)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0476)|Lung(427;0.209)		TGGTGGCCTTCATTCAGCATT	0.582000													14	54					0	0	0.000566183	0	0
CSMD2	114784	broad.mit.edu	37	1	34158608	34158608	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr1:34158608G>A	uc001bxn.1	-	25	3883	c.3854C>T	c.(3853-3855)TCA>TTA	p.S1285L	CSMD2_uc001bxm.1_Missense_Mutation_p.S1325L|CSMD2_uc001bxo.1_Missense_Mutation_p.S198L	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	1285	CUB 8.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				ATACCCGGGTGACAGCACCTG	0.572000													23	117					0	0	0.00229938	0	0
CSMD2	114784	broad.mit.edu	37	1	34254299	34254299	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr1:34254299G>A	uc001bxn.1	-	12	1474	c.1445C>T	c.(1444-1446)TCG>TTG	p.S482L	CSMD2_uc001bxm.1_Missense_Mutation_p.S522L	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	482	CUB 3.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				ATCCGGGACCGATGTACCTGT	0.493000													14	30					0	0	0.00244969	0	0
WDR65	149465	broad.mit.edu	37	1	43663253	43663254	+	Missense_Mutation	DNP	GT	AA	AA			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr1:43663253_43663254GT>AA	uc001cip.1	+	7	1273_1274	c.1152_1153GT>AA	c.(1150-1155)ATGTAT>ATAAAT	p.384_385MY>IN	EBNA1BP2_uc001cio.2_Intron|WDR65_uc010ojz.1_Missense_Mutation_p.373_374MY>IN|WDR65_uc001ciq.1_Missense_Mutation_p.384_385MY>IN	NM_152498	NP_689711	Q96MR6	WDR65_HUMAN	WD repeat domain 65	384_385										skin(1)	1	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				AGTATTTGATGTATCCATTGCA	0.485000													24	83					0	0	6.4e-05	0	0
UQCRH	7388	broad.mit.edu	37	1	46775916	46775916	+	Silent	SNP	A	G	G			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr1:46775916A>G	uc001cpp.2	+	3	230	c.171A>G	c.(169-171)GTA>GTG	p.V57V	UQCRH_uc001cpq.2_RNA	NM_006004	NP_005995	P07919	QCR6_HUMAN	ubiquinol-cytochrome c reductase hinge protein	57				V -> D (in Ref. 1; AAA36317/CAA68733).	aerobic respiration|mitochondrial electron transport, ubiquinol to cytochrome c		ubiquinol-cytochrome-c reductase activity				0	Acute lymphoblastic leukemia(166;0.155)					ATGAGCGTGTATCCTCTCGAT	0.517000													3	83					0	0	0.00198382	0	0
CYP4X1	260293	broad.mit.edu	37	1	47505115	47505115	+	Silent	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr1:47505115C>T	uc001cqt.2	+	8	1234	c.984C>T	c.(982-984)ATC>ATT	p.I328I	CYP4X1_uc001cqr.2_Silent_p.I327I|CYP4X1_uc001cqs.2_Silent_p.I263I	NM_178033	NP_828847	Q8N118	CP4X1_HUMAN	cytochrome P450, family 4, subfamily X,	328						endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)|skin(1)	2						TCTCCTGGATCCTTTACTGCC	0.517000													16	34					0	0	0.000958276	0	0
FAM159A	348378	broad.mit.edu	37	1	53122470	53122470	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr1:53122470G>A	uc001cuf.2	+	3	431	c.331G>A	c.(331-333)GAG>AAG	p.E111K	FAM159A_uc001cug.1_Intron|FAM159A_uc001cuh.2_Intron	NM_001042693	NP_001036158	Q6UWV7	F159A_HUMAN	hypothetical protein LOC348378	111						integral to membrane					0						AGGCCCTGAGGAGGTTTCTCC	0.562000													20	63					0	0	0.00229938	0	0
C1orf173	127254	broad.mit.edu	37	1	75072544	75072544	+	Silent	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr1:75072544C>T	uc001dgg.2	-	10	1449	c.1230G>A	c.(1228-1230)CCG>CCA	p.P410P	uc001dgh.2_Intron|C1orf173_uc001dgi.3_Silent_p.P204P	NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	410										ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						TCCTAGATTTCGGCAAAGACG	0.413000													6	34					0	0	0.00198382	0	0
CLCA3P	9629	broad.mit.edu	37	1	87102514	87102514	+	RNA	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr1:87102514C>T	uc010osh.1	+	4		c.498C>T				NR_024604				Synthetic construct DNA, clone: pF1KB7225, Homo sapiens CLCA3 gene for chloride channel, calcium activated, family member 3, without stop codon, in Flexi system.												0						GGGCCCATCTCCGGTGGGGAG	0.368000													13	66					0	0	0.000308642	0	0
CD101	9398	broad.mit.edu	37	1	117561029	117561029	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr1:117561029C>T	uc010oxb.1	+	6	1922	c.1864C>T	c.(1864-1866)CGT>TGT	p.R622C	CD101_uc009whd.2_Missense_Mutation_p.R622C|CD101_uc010oxc.1_Missense_Mutation_p.R622C|CD101_uc010oxd.1_Missense_Mutation_p.R560C	NM_004258	NP_004249	Q93033	IGSF2_HUMAN	immunoglobulin superfamily, member 2 precursor	622	Extracellular (Potential).|Ig-like C2-type 5.				cell surface receptor linked signaling pathway	integral to membrane|plasma membrane	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4						GTCTTTATTTCGTTCACAACT	0.448000													12	46					0	0	0.00185496	0	0
LOC200030	200030	broad.mit.edu	37	1	148344705	148344705	+	Silent	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr1:148344705C>T	uc001eqf.2	-	2	248	c.213G>A	c.(211-213)CTG>CTA	p.L71L	LOC200030_uc001eqe.2_Intron|LOC200030_uc001eqg.2_Intron|NBPF14_uc009wkf.1_Intron|uc001erd.3_Silent_p.L71L|uc001erc.3_Intron|uc010paj.1_Intron|uc010pau.1_5'Flank|uc010pav.1_Silent_p.L71L|uc010paw.1_Intron	NM_017940	NP_060410	Q86T75	NBPFB_HUMAN	hypothetical protein LOC55672	71	Potential.					cytoplasm					0						GCTCATTCCTCAGCATAAATT	0.542000													12	258					0	0	0.00121646	0	0
LASS2	29956	broad.mit.edu	37	1	150939673	150939673	+	Silent	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr1:150939673G>A	uc001evy.2	-	8	1005	c.618C>T	c.(616-618)TTC>TTT	p.F206F	LASS2_uc001evz.2_Silent_p.F206F|LASS2_uc009wmh.2_Silent_p.F56F	NM_181746	NP_859530	Q96G23	CERS2_HUMAN	LAG1 longevity assurance 2	206	TLC.|Cytoplasmic (Potential).					endoplasmic reticulum membrane|integral to membrane|nuclear membrane	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|sphingosine N-acyltransferase activity				0	all_lung(15;8.07e-35)|Lung NSC(24;7.93e-31)|Lung SC(34;0.00202)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.211)			TCTGTTCCTTGAAATCCTGCA	0.493000													21	59					0	0	0.00229938	0	0
FLG2	388698	broad.mit.edu	37	1	152323959	152323959	+	Silent	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr1:152323959C>T	uc001ezw.3	-	3	6376	c.6303G>A	c.(6301-6303)AGG>AGA	p.R2101R	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	2101							calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GGCCAGATCCCCTTCTTCCAG	0.527000													85	223					0	0	0.000781405	0	0
MSTO1	55154	broad.mit.edu	37	1	155582230	155582230	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr1:155582230C>T	uc001fky.2	+	9	868	c.835C>T	c.(835-837)CGT>TGT	p.R279C	MSTO1_uc001fkw.2_Missense_Mutation_p.R279C|MSTO1_uc001fkx.2_Missense_Mutation_p.R279C|MSTO1_uc001fla.2_Missense_Mutation_p.R98C|MSTO1_uc001fkz.2_Missense_Mutation_p.R210C|MSTO1_uc001fld.3_Missense_Mutation_p.R101C|MSTO1_uc009wqs.2_Missense_Mutation_p.R158C|MSTO1_uc010pgf.1_Missense_Mutation_p.R224C|MSTO1_uc001flb.2_Missense_Mutation_p.R148C|MSTO1_uc001flc.2_Missense_Mutation_p.R101C	NM_018116	NP_060586	Q9BUK6	MSTO1_HUMAN	misato	279					mitochondrion distribution|protein polymerization	mitochondrial outer membrane|protein complex					0	Hepatocellular(266;0.0997)|all_neural(408;0.129)|all_hematologic(923;0.145)					AAACATCTATCGTCTATTAAA	0.532000													24	49					0	0	0.00127121	0	0
PYHIN1	149628	broad.mit.edu	37	1	158908307	158908307	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr1:158908307G>A	uc001ftb.2	+	3	631	c.386G>A	c.(385-387)GGA>GAA	p.G129E	PYHIN1_uc001fta.3_Missense_Mutation_p.G129E|PYHIN1_uc001ftc.2_Missense_Mutation_p.G120E|PYHIN1_uc001ftd.2_Missense_Mutation_p.G129E|PYHIN1_uc001fte.2_Missense_Mutation_p.G120E	NM_152501	NP_689714	Q6K0P9	IFIX_HUMAN	pyrin and HIN domain family, member 1 alpha 1	129					cell cycle	nuclear speck				ovary(3)|pancreas(1)	4	all_hematologic(112;0.0378)					ACAGCTAAAGGAGCAGAGGAG	0.488000													6	37					0	0	0.000157383	0	0
CCDC19	25790	broad.mit.edu	37	1	159863029	159863029	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr1:159863029G>A	uc001fui.2	-	2	88	c.70C>T	c.(70-72)CGC>TGC	p.R24C	CCDC19_uc009wtb.2_RNA|CCDC19_uc001fuj.2_RNA|CCDC19_uc001fuk.2_5'UTR|CCDC19_uc001ful.2_5'UTR|CCDC19_uc009wtc.1_Missense_Mutation_p.R24C	NM_012337	NP_036469	Q9UL16	CCD19_HUMAN	nasopharyngeal epithelium specific protein 1	24						mitochondrion|soluble fraction				ovary(1)	1	all_hematologic(112;0.0597)		BRCA - Breast invasive adenocarcinoma(70;0.151)			GTCCGATAGCGAGCCTTATTC	0.517000													17	105					0	0	0.000422831	0	0
FCGR2B	2213	broad.mit.edu	37	1	161641401	161641401	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr1:161641401C>T	uc001gaz.1	+	3	445	c.353C>T	c.(352-354)ACC>ATC	p.T118I	FCGR2B_uc009wum.1_Missense_Mutation_p.T118I|FCGR2B_uc001gay.1_Missense_Mutation_p.T117I|FCGR2B_uc001gba.1_Missense_Mutation_p.T117I|FCGR2B_uc001gbb.1_Missense_Mutation_p.T118I|FCGR2B_uc009wun.1_Missense_Mutation_p.T111I	NM_004001	NP_003992	P31994	FCG2B_HUMAN	Fc fragment of IgG, low affinity IIb, receptor	118	Ig-like C2-type 1.|Extracellular (Potential).				immune response|interspecies interaction between organisms|regulation of immune response	integral to membrane|plasma membrane	IgG binding|receptor activity				0	all_cancers(52;4.89e-16)|all_hematologic(112;0.0207)		BRCA - Breast invasive adenocarcinoma(70;0.00376)		Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	ACTGGCCAGACCAGCCTCAGC	0.582000			T	?	ALL								4	34					0	0	0.000602214	0	0
ASTN1	460	broad.mit.edu	37	1	176857294	176857294	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr1:176857294C>T	uc001glc.2	-	18	3199	c.2987G>A	c.(2986-2988)GGA>GAA	p.G996E	ASTN1_uc001glb.1_Missense_Mutation_p.G996E|ASTN1_uc001gld.1_Missense_Mutation_p.G996E	NM_004319	NP_004310	O14525	ASTN1_HUMAN	astrotactin isoform 1	1004					cell migration|neuron cell-cell adhesion	integral to membrane				ovary(6)|skin(5)|central_nervous_system(2)|large_intestine(1)|lung(1)	15						GATGACATCTCCAGTCCCTGA	0.542000													10	40					0	0	0.000442599	0	0
HMCN1	83872	broad.mit.edu	37	1	186088406	186088406	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr1:186088406C>T	uc001grq.1	+	78	12161	c.11932C>T	c.(11932-11934)CGA>TGA	p.R3978*		NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	3978	Ig-like C2-type 38.				response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						CTCTGCACATCGACACGTGAC	0.413000													31	77					0	0	0.000814825	0	0
F13B	2165	broad.mit.edu	37	1	197019935	197019935	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr1:197019935C>T	uc001gtt.1	-	10	1674	c.1630G>A	c.(1630-1632)GAA>AAA	p.E544K		NM_001994	NP_001985	P05160	F13B_HUMAN	coagulation factor XIII B subunit precursor	544	Sushi 9.				blood coagulation	extracellular region				upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						GAGCCATTTTCATAGGTGTCT	0.363000													9	23					0	0	0.000274275	0	0
PPP1R12B	4660	broad.mit.edu	37	1	202403814	202403814	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr1:202403814C>T	uc001gya.1	+	9	1316	c.1172C>T	c.(1171-1173)TCC>TTC	p.S391F	PPP1R12B_uc001gxy.2_Missense_Mutation_p.S391F|PPP1R12B_uc009xad.1_Missense_Mutation_p.S197F|PPP1R12B_uc009xae.1_Intron|PPP1R12B_uc001gxz.1_Missense_Mutation_p.S391F	NM_002481	NP_002472	O60237	MYPT2_HUMAN	protein phosphatase 1, regulatory (inhibitor)	391					regulation of muscle contraction|signal transduction	cytoplasm	enzyme activator activity			ovary(3)	3			BRCA - Breast invasive adenocarcinoma(75;0.166)			GTCAATCATTCCAACTCTGAA	0.368000													17	58					0	0	0.000958276	0	0
PPFIA4	8497	broad.mit.edu	37	1	203037611	203037611	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr1:203037611T>C	uc001gyz.2	+	14	2254	c.1661T>C	c.(1660-1662)GTT>GCT	p.V554A	PPFIA4_uc009xaj.2_Missense_Mutation_p.V1185A|PPFIA4_uc010pqf.1_Missense_Mutation_p.V767A|PPFIA4_uc001gza.2_Missense_Mutation_p.V545A|PPFIA4_uc001gzb.1_Missense_Mutation_p.V240A|PPFIA4_uc001gzc.1_Missense_Mutation_p.V96A	NM_015053	NP_055868	O75335	LIPA4_HUMAN	protein tyrosine phosphatase, receptor type, f	554	SAM 3.				cell communication	cell surface|cytoplasm	protein binding			ovary(4)|skin(1)	5						GACCAGGTGGTTCATTGGGTC	0.552000													3	22					0	0	6.4e-05	0	0
RASSF5	83593	broad.mit.edu	37	1	206757879	206757879	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr1:206757879T>C	uc001hed.2	+	4	908	c.851T>C	c.(850-852)CTA>CCA	p.L284P	RASSF5_uc001hec.1_Missense_Mutation_p.L284P|RASSF5_uc001hee.2_Missense_Mutation_p.L284P|RASSF5_uc001hef.2_Missense_Mutation_p.L131P|RASSF5_uc001heg.1_Missense_Mutation_p.L57P	NM_182663	NP_872604	Q8WWW0	RASF5_HUMAN	Ras association (RalGDS/AF-6) domain family 5	284	Ras-associating.				apoptosis|intracellular signal transduction	cytoplasm|microtubule	metal ion binding|protein binding			ovary(1)	1	Breast(84;0.183)		BRCA - Breast invasive adenocarcinoma(75;0.166)			TACCTGCCCCTAGATGCCATC	0.582000													3	74					0	0	6.4e-05	0	0
SYT14	255928	broad.mit.edu	37	1	210273574	210273574	+	Missense_Mutation	SNP	G	A	A	rs140554266		TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr1:210273574G>A	uc009xcv.2	+	6	1004	c.932G>A	c.(931-933)AGA>AAA	p.R311K	SYT14_uc001hhs.3_Missense_Mutation_p.R356K|SYT14_uc001hht.3_Missense_Mutation_p.R311K|SYT14_uc001hhu.3_Intron|SYT14_uc010psn.1_Missense_Mutation_p.R356K|SYT14_uc010pso.1_Missense_Mutation_p.R273K	NM_153262	NP_694994	Q8NB59	SYT14_HUMAN	synaptotagmin XIV isoform 4	311	Cytoplasmic (Potential).|C2 1.					integral to membrane				ovary(1)|skin(1)	2				OV - Ovarian serous cystadenocarcinoma(81;0.085)		AAGAAACAGAGAGCAAAAACC	0.418000													6	21					0	0	0.00116845	0	0
TLR5	7100	broad.mit.edu	37	1	223286174	223286174	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr1:223286174G>A	uc001hnv.1	-	4	646	c.200C>T	c.(199-201)CCC>CTC	p.P67L	TLR5_uc001hnw.1_Missense_Mutation_p.P67L	NM_003268	NP_003259	O60602	TLR5_HUMAN	toll-like receptor 5 precursor	67	Extracellular (Potential).|LRR 1.				cellular response to mechanical stimulus|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of interleukin-8 production|positive regulation of toll-like receptor signaling pathway	integral to membrane|plasma membrane	interleukin-1 receptor binding|transmembrane receptor activity			ovary(2)|lung(1)|skin(1)	4				GBM - Glioblastoma multiforme(131;0.0851)		TTCCAGAAAGGGGAAGGATGA	0.542000													11	57					0	0	0.000673444	0	0
OR2M3	127062	broad.mit.edu	37	1	248367019	248367019	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr1:248367019C>T	uc010pzg.1	+	1	650	c.650C>T	c.(649-651)TCC>TTC	p.S217F		NM_001004689	NP_001004689	Q8NG83	OR2M3_HUMAN	olfactory receptor, family 2, subfamily M,	217	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			ATCATTGCTTCCTATGCTCGA	0.423000													34	137					0	0	0.00148497	0	0
OR2T2	401992	broad.mit.edu	37	1	248616137	248616137	+	Silent	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr1:248616137C>T	uc001iek.1	+	1	39	c.39C>T	c.(37-39)TTC>TTT	p.F13F		NM_001004136	NP_001004136	Q6IF00	OR2T2_HUMAN	olfactory receptor, family 2, subfamily T,	13	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			CCACTAACTTCGTCCTCACAG	0.507000													16	95					0	0	0.00229938	0	0
PITRM1	10531	broad.mit.edu	37	10	3199198	3199198	+	Missense_Mutation	SNP	T	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr10:3199198T>A	uc010qah.1	-	12	1342	c.1310A>T	c.(1309-1311)AAT>ATT	p.N437I	PITRM1_uc001igr.1_Missense_Mutation_p.N469I|PITRM1_uc001igt.1_Missense_Mutation_p.N469I|PITRM1_uc009xhv.1_Missense_Mutation_p.N34I|PITRM1_uc001igu.1_Missense_Mutation_p.N461I|PITRM1_uc010qai.1_Missense_Mutation_p.N440I|PITRM1_uc001igw.1_Missense_Mutation_p.N469I			E7ES23	E7ES23_HUMAN	SubName: Full=cDNA FLJ54065, moderately similar to Mus musculus pitrilysin metallepetidase 1 (Pitrm1), mRNA;	437					proteolysis		metalloendopeptidase activity|zinc ion binding			pancreas(1)	1						AGCTAACTGATTTCCCAACTT	0.398000													3	23					0	0	6.4e-05	0	0
OR13A1	79290	broad.mit.edu	37	10	45799868	45799868	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr10:45799868C>T	uc001jcc.1	-	4	312	c.3G>A	c.(1-3)ATG>ATA	p.M1I	OR13A1_uc001jcd.1_5'UTR	NM_001004297	NP_001004297	Q8NGR1	O13A1_HUMAN	olfactory receptor, family 13, subfamily A,	1	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TCCACAGCTTCATGTGATTTC	0.502000													9	59					0	0	0.000978159	0	0
FAM21C	253725	broad.mit.edu	37	10	46261178	46261178	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr10:46261178G>A	uc001jcu.2	+	19	1888	c.1789G>A	c.(1789-1791)GCT>ACT	p.A597T	FAM21C_uc001jcs.1_Missense_Mutation_p.A542T|FAM21C_uc001jct.2_Missense_Mutation_p.A597T|FAM21C_uc010qfi.1_Missense_Mutation_p.A573T|FAM21C_uc010qfj.1_5'UTR|FAM21C_uc010qfk.1_5'UTR	NM_015262	NP_056077	A8K5W5	A8K5W5_HUMAN	hypothetical protein LOC253725	597										ovary(1)	1						GTCTCTACAAGCTCAGAGAGA	0.433000													20	187					0	0	0.00278032	0	0
ARID5B	84159	broad.mit.edu	37	10	63850777	63850777	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr10:63850777G>A	uc001jlt.1	+	10	1581	c.1555G>A	c.(1555-1557)GAA>AAA	p.E519K		NM_032199	NP_115575	Q14865	ARI5B_HUMAN	AT rich interactive domain 5B (MRF1-like)	519					liver development|negative regulation of transcription, DNA-dependent|positive regulation of sequence-specific DNA binding transcription factor activity|transcription, DNA-dependent		protein binding|transcription regulatory region DNA binding			ovary(2)|upper_aerodigestive_tract(1)|kidney(1)	4	Prostate(12;0.016)|all_hematologic(501;0.215)					GAAGGACAACGAAACAGACCA	0.537000													14	64					0	0	0.000422831	0	0
MAT1A	4143	broad.mit.edu	37	10	82045326	82045326	+	Silent	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr10:82045326G>A	uc001kbw.2	-	2	366	c.111C>T	c.(109-111)ATC>ATT	p.I37I		NM_000429	NP_000420	Q00266	METK1_HUMAN	methionine adenosyltransferase I, alpha	37					methylation|S-adenosylmethionine biosynthetic process|xenobiotic metabolic process	cytosol	ATP binding|metal ion binding|methionine adenosyltransferase activity				0			Colorectal(32;0.229)		L-Methionine(DB00134)|S-Adenosylmethionine(DB00118)	CTGCATCACTGATCTGGTCAC	0.448000													6	37					0	0	0.00198382	0	0
SLIT1	6585	broad.mit.edu	37	10	98763970	98763970	+	Silent	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr10:98763970C>T	uc001kmw.2	-	34	3972	c.3720G>A	c.(3718-3720)ACG>ACA	p.T1240T		NM_003061	NP_003052	O75093	SLIT1_HUMAN	slit homolog 1 precursor	1240	Laminin G-like.				axon extension involved in axon guidance|forebrain morphogenesis|motor axon guidance|negative chemotaxis|negative regulation of synaptogenesis	cytoplasm|extracellular space	calcium ion binding|Roundabout binding			ovary(4)	4		Colorectal(252;0.162)		Epithelial(162;2.02e-08)|all cancers(201;1.5e-06)		CATCGTTGATCGTCTCAGCAC	0.572000													8	96					0	0	0.000673444	0	0
CARS	833	broad.mit.edu	37	11	3063454	3063454	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr11:3063454G>A	uc001lxh.2	-	2	132	c.58C>T	c.(58-60)CCT>TCT	p.P20S	CARS_uc001lxe.2_5'UTR|CARS_uc001lxf.2_Missense_Mutation_p.P103S|CARS_uc001lxg.2_Missense_Mutation_p.P20S|CARS_uc010qxo.1_Missense_Mutation_p.P103S|CARS_uc010qxp.1_Missense_Mutation_p.P33S	NM_001751	NP_001742	P49589	SYCC_HUMAN	cysteinyl-tRNA synthetase isoform b	20					cysteinyl-tRNA aminoacylation	cytoplasm|cytosol	ATP binding|cysteine-tRNA ligase activity|metal ion binding|protein homodimerization activity|protein homodimerization activity|tRNA binding|tRNA binding		CARS/ALK(5)	soft_tissue(5)|ovary(2)	7		all_epithelial(84;0.000236)|Medulloblastoma(188;0.00106)|Breast(177;0.00328)|Ovarian(85;0.00556)|all_neural(188;0.00681)		BRCA - Breast invasive adenocarcinoma(625;0.00317)|LUSC - Lung squamous cell carcinoma(625;0.218)	L-Cysteine(DB00151)	CCAGCAGGAGGGGACCACTGG	0.617000			T	ALK	ALCL								11	61					0	0	0.00136819	0	0
OR52B4	143496	broad.mit.edu	37	11	4388619	4388619	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr11:4388619C>T	uc010qye.1	-	1	907	c.907G>A	c.(907-909)GAA>AAA	p.E303K		NM_001005161	NP_001005161	Q8NGK2	O52B4_HUMAN	olfactory receptor, family 52, subfamily B,	303	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|Breast(177;0.0249)|all_neural(188;0.0577)		Epithelial(150;1.57e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0826)|LUSC - Lung squamous cell carcinoma(625;0.19)		ACCACCTGTTCCTGGATTTGC	0.398000													5	24					0	0	0.000602214	0	0
C11orf40	143501	broad.mit.edu	37	11	4594542	4594542	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr11:4594542C>A	uc010qyg.1	-	2	302	c.302G>T	c.(301-303)AGG>ATG	p.R101M		NM_144663	NP_653264	Q8WZ69	CK040_HUMAN	hypothetical protein LOC143501	101										ovary(2)	2		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;4.28e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0288)|LUSC - Lung squamous cell carcinoma(625;0.192)		TTACAGTACCCTAAAGCAAGG	0.488000													17	80					1.45105e-14	6.3744e-14	0.00074312	1	0
OR51T1	401665	broad.mit.edu	37	11	4903473	4903473	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr11:4903473C>T	uc010qyp.1	+	1	425	c.425C>T	c.(424-426)TCG>TTG	p.S142L		NM_001004759	NP_001004759	Q8NGJ9	O51T1_HUMAN	olfactory receptor, family 51, subfamily T,	115	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|large_intestine(1)	3		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;4.77e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|LUSC - Lung squamous cell carcinoma(625;0.19)		CTGGAGTCCTCGGTGCTGGTA	0.502000													16	63					0	0	0.00074312	0	0
FAM160A2	84067	broad.mit.edu	37	11	6236022	6236022	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr11:6236022G>A	uc001mcl.3	-	10	2694	c.2335C>T	c.(2335-2337)CGC>TGC	p.R779C	FAM160A2_uc001mck.3_Missense_Mutation_p.R793C	NM_001098794	NP_001092264	Q8N612	F16A2_HUMAN	hypothetical protein LOC84067 isoform 2	779					early endosome to late endosome transport|endosome organization|endosome to lysosome transport|lysosome organization|protein transport	FHF complex	protein binding			skin(2)	2						AGGAAAGAGCGGAGCAGGGGC	0.602000													7	30					0	0	0.000274275	0	0
CNGA4	1262	broad.mit.edu	37	11	6260614	6260614	+	Silent	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr11:6260614G>A	uc001mco.2	+	2	170	c.63G>A	c.(61-63)AGG>AGA	p.R21R	CNGA4_uc010raa.1_5'UTR|CNGA4_uc001mcn.2_5'UTR	NM_001037329	NP_001032406	Q8IV77	CNGA4_HUMAN	cyclic nucleotide gated channel alpha 4	21	Cytoplasmic (Potential).				response to stimulus|sensory perception of smell		cAMP binding			skin(1)	1		Medulloblastoma(188;0.00263)|all_neural(188;0.026)|Breast(177;0.029)		Epithelial(150;2.04e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TTTCTTACAGGAAGTTGCTGC	0.483000													41	153					0	0	0.00170553	0	0
OR10A5	144124	broad.mit.edu	37	11	6867544	6867544	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr11:6867544C>T	uc001met.1	+	1	631	c.631C>T	c.(631-633)CCC>TCC	p.P211S		NM_178168	NP_835462	Q9H207	O10A5_HUMAN	olfactory receptor, family 10, subfamily A,	211	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.68e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		GGTCATGATCCCCTGCTTGCT	0.517000													32	103					0	0	0.000692331	0	0
EIF3F	8665	broad.mit.edu	37	11	8014441	8014441	+	Missense_Mutation	SNP	A	C	C			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr11:8014441A>C	uc001mfw.2	+	4	556	c.523A>C	c.(523-525)ACG>CCG	p.T175P	EIF3F_uc010rbj.1_Missense_Mutation_p.T26P	NM_003754	NP_003745	O00303	EIF3F_HUMAN	eukaryotic translation initiation factor 3,	175	MPN.					cytosol|eukaryotic translation initiation factor 3 complex	protein binding|translation initiation factor activity			lung(1)	1				Epithelial(150;1.44e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		CAGGTACGCTACGGGCCATGA	0.537000													6	90					0	0	0.00116845	0	0
ST5	6764	broad.mit.edu	37	11	8747751	8747751	+	Missense_Mutation	SNP	G	A	A	rs141549433		TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr11:8747751G>A	uc001mgt.2	-	4	1532	c.1346C>T	c.(1345-1347)TCC>TTC	p.S449F	ST5_uc009yfr.2_Missense_Mutation_p.S29F|ST5_uc001mgu.2_Missense_Mutation_p.S29F|ST5_uc001mgv.2_Missense_Mutation_p.S449F|ST5_uc010rbq.1_RNA	NM_213618	NP_998783	P78524	ST5_HUMAN	suppression of tumorigenicity 5 isoform 1	449					positive regulation of ERK1 and ERK2 cascade		protein binding			upper_aerodigestive_tract(1)	1				Epithelial(150;2.63e-07)|BRCA - Breast invasive adenocarcinoma(625;0.0352)		AAACTCAAAGGATTTTCTGTG	0.488000													17	52					0	0	0.000958276	0	0
PLEKHA7	144100	broad.mit.edu	37	11	16837726	16837726	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr11:16837726G>A	uc001mmo.2	-	12	1967	c.1952C>T	c.(1951-1953)TCG>TTG	p.S651L	PLEKHA7_uc010rcu.1_Missense_Mutation_p.S651L|PLEKHA7_uc010rcv.1_Missense_Mutation_p.S225L|PLEKHA7_uc001mmn.2_Missense_Mutation_p.S359L	NM_175058	NP_778228	Q6IQ23	PKHA7_HUMAN	pleckstrin homology domain containing, family A	651	Interaction with CTNND1.				epithelial cell-cell adhesion|zonula adherens maintenance	centrosome|zonula adherens	delta-catenin binding			skin(2)|central_nervous_system(1)	3						TCACCCTACCGATTTTCCATG	0.308000													12	31					0	0	0.00136819	0	0
PLEKHA7	144100	broad.mit.edu	37	11	16838466	16838466	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr11:16838466G>A	uc001mmo.2	-	11	1762	c.1747C>T	c.(1747-1749)CCA>TCA	p.P583S	PLEKHA7_uc010rcu.1_Missense_Mutation_p.P583S|PLEKHA7_uc010rcv.1_Missense_Mutation_p.P157S|PLEKHA7_uc001mmn.2_Missense_Mutation_p.P291S	NM_175058	NP_778228	Q6IQ23	PKHA7_HUMAN	pleckstrin homology domain containing, family A	583	Interaction with CTNND1.|Pro-rich.				epithelial cell-cell adhesion|zonula adherens maintenance	centrosome|zonula adherens	delta-catenin binding			skin(2)|central_nervous_system(1)	3						CGCCGGGGTGGGAAGACCCTT	0.662000													8	34					0	0	0.000673444	0	0
OR5AS1	219447	broad.mit.edu	37	11	55798432	55798432	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr11:55798432G>A	uc010riw.1	+	1	538	c.538G>A	c.(538-540)GAT>AAT	p.D180N		NM_001001921	NP_001001921	Q8N127	O5AS1_HUMAN	olfactory receptor, family 5, subfamily AS,	180	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|liver(1)|skin(1)	5	Esophageal squamous(21;0.00693)					TTTTTTCTGTGATATCCCACC	0.443000													30	135					0	0	0.00178596	0	0
OR5AS1	219447	broad.mit.edu	37	11	55798797	55798797	+	Silent	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr11:55798797C>T	uc010riw.1	+	1	903	c.903C>T	c.(901-903)CTC>CTT	p.L301L		NM_001001921	NP_001001921	Q8N127	O5AS1_HUMAN	olfactory receptor, family 5, subfamily AS,	301	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|liver(1)|skin(1)	5	Esophageal squamous(21;0.00693)					AAAATGCTCTCAAAAAGCTAT	0.303000													8	54					0	0	0.000157383	0	0
OR8H3	390152	broad.mit.edu	37	11	55890127	55890127	+	Silent	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr11:55890127C>T	uc001nii.1	+	1	279	c.279C>T	c.(277-279)TCC>TCT	p.S93S		NM_001005201	NP_001005201	Q8N146	OR8H3_HUMAN	olfactory receptor, family 8, subfamily H,	93	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00693)					ACTATATTTCCTTCACGGGCT	0.423000													52	206					0	0	0.000781405	0	0
AHNAK	79026	broad.mit.edu	37	11	62292482	62292482	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr11:62292482G>A	uc001ntl.2	-	5	9707	c.9407C>T	c.(9406-9408)GCC>GTC	p.A3136V	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	3136					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				CACATCTGGGGCATTAATATC	0.473000													7	302					0	0	0.000157383	0	0
BBS1	582	broad.mit.edu	37	11	66283032	66283032	+	Silent	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr11:66283032C>T	uc001oij.1	+	5	466	c.454C>T	c.(454-456)CTG>TTG	p.L152L	BBS1_uc001oii.1_Silent_p.L189L|BBS1_uc010rpf.1_Intron|BBS1_uc010rpg.1_Intron|BBS1_uc001oik.1_Silent_p.L76L|BBS1_uc001oil.1_Silent_p.L152L	NM_024649	NP_078925	Q8NFJ9	BBS1_HUMAN	Bardet-Biedl syndrome 1	152					nonmotile primary cilium assembly|photoreceptor cell maintenance|response to stimulus|retina homeostasis	BBSome|cilium membrane|cytoplasm	protein binding			ovary(1)	1						CCCCTTAACCCTGAAGGAGAT	0.577000									Bardet-Biedl_syndrome				6	45					0	0	0.00198382	0	0
C2CD3	26005	broad.mit.edu	37	11	73804914	73804914	+	Silent	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr11:73804914G>A	uc001ouu.2	-	18	3518	c.3291C>T	c.(3289-3291)TTC>TTT	p.F1097F		NM_015531	NP_056346	Q4AC94	C2CD3_HUMAN	C2 calcium-dependent domain containing 3	1097						centrosome				ovary(4)|pancreas(2)|skin(1)	7	Breast(11;4.16e-06)					CCTGTGCAGAGAAAGCACTTA	0.522000													5	25					0	0	0.000602214	0	0
DLG2	1740	broad.mit.edu	37	11	83691581	83691581	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr11:83691581C>T	uc001paj.2	-	7	1012	c.709G>A	c.(709-711)GGA>AGA	p.G237R	DLG2_uc001pai.2_Missense_Mutation_p.G186R|DLG2_uc010rsy.1_Missense_Mutation_p.G204R|DLG2_uc010rsz.1_Missense_Mutation_p.G237R|DLG2_uc010rta.1_Missense_Mutation_p.G237R|DLG2_uc001pak.2_Missense_Mutation_p.G342R|DLG2_uc010rtb.1_Missense_Mutation_p.G204R|DLG2_uc001pal.1_Missense_Mutation_p.G237R|DLG2_uc001pam.1_Missense_Mutation_p.G276R	NM_001364	NP_001355	Q15700	DLG2_HUMAN	chapsyn-110 isoform 2	237	PDZ 2.					cell junction|postsynaptic density|postsynaptic membrane	guanylate kinase activity|protein binding|protein binding			ovary(3)|pancreas(2)|skin(1)	6		all_cancers(6;0.00791)|Acute lymphoblastic leukemia(157;4.44e-05)|all_hematologic(158;0.0036)				TGCAACCTTCCATCTTTTTGT	0.398000													6	57					0	0	0.00116845	0	0
ANGPTL5	253935	broad.mit.edu	37	11	101762115	101762115	+	Silent	SNP	A	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr11:101762115A>T	uc001pgl.2	-	9	1658	c.1062T>A	c.(1060-1062)CTT>CTA	p.L354L		NM_178127	NP_835228	Q86XS5	ANGL5_HUMAN	angiopoietin-like 5 precursor	354	Fibrinogen C-terminal.				signal transduction	extracellular space	receptor binding			ovary(1)	1		Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.043)		BRCA - Breast invasive adenocarcinoma(274;0.0328)		TTCCAGTTGCAAGCAATTTTC	0.398000													24	84					0	0	0.000720815	0	0
H2AFX	3014	broad.mit.edu	37	11	118965752	118965752	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr11:118965752G>A	uc001pvg.2	-	1	426	c.353C>T	c.(352-354)CCC>CTC	p.P118L	H2AFX_uc001pvh.1_RNA	NM_002105	NP_002096	P16104	H2AX_HUMAN	H2A histone family, member X	118					DNA damage checkpoint|double-strand break repair via homologous recombination|meiosis|nucleosome assembly|positive regulation of DNA repair|response to ionizing radiation	nucleoplasm|nucleosome	DNA binding|enzyme binding|histone binding				0	all_hematologic(175;0.0977)	Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.47e-05)		GGTCTTCTTGGGCAGCAGCAC	0.617000								Chromatin_Structure|Direct_reversal_of_damage			OREG0021395	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	18	43					0	0	0.00152264	0	0
OR8A1	390275	broad.mit.edu	37	11	124440012	124440012	+	Silent	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr11:124440012G>A	uc010san.1	+	1	48	c.48G>A	c.(46-48)AGG>AGA	p.R16R		NM_001005194	NP_001005194	Q8NGG7	OR8A1_HUMAN	olfactory receptor, family 8, subfamily A,	16	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0214)		CCACCCAGAGGAGAATGGCTG	0.512000													6	31					0	0	0.00116845	0	0
SLC6A12	6539	broad.mit.edu	37	12	307164	307164	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr12:307164C>T	uc001qhz.2	-	10	1395	c.852G>A	c.(850-852)TGG>TGA	p.W284*	SLC6A12_uc001qhx.2_Intron|SLC6A12_uc001qhy.2_5'UTR|SLC6A12_uc001qia.2_Nonsense_Mutation_p.W284*|SLC6A12_uc001qib.2_Nonsense_Mutation_p.W284*|SLC6A12_uc009zdh.1_Nonsense_Mutation_p.W284*	NM_003044	NP_003035	P48065	S6A12_HUMAN	solute carrier family 6 (neurotransmitter	284					cellular nitrogen compound metabolic process|neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity			ovary(1)	1	all_cancers(10;0.0172)|all_epithelial(11;0.0283)|all_lung(10;0.0392)|Lung NSC(10;0.0567)|Ovarian(42;0.142)		OV - Ovarian serous cystadenocarcinoma(31;0.00227)			CCGCATCCATCCACACCTACA	0.592000													5	40					0	0	0.000602214	0	0
SLC6A13	6540	broad.mit.edu	37	12	369077	369077	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr12:369077C>T	uc001qic.1	-	2	195	c.142G>A	c.(142-144)GAG>AAG	p.E48K	SLC6A13_uc009zdj.1_Missense_Mutation_p.E48K|SLC6A13_uc010sdl.1_Missense_Mutation_p.E48K|SLC6A13_uc001qid.1_Missense_Mutation_p.E48K	NM_016615	NP_057699	Q9NSD5	S6A13_HUMAN	solute carrier family 6 (neurotransmitter	48	Helical; Name=1; (Potential).				neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity				0	all_cancers(10;0.0416)|all_epithelial(11;0.0537)|all_lung(10;0.0989)|Lung NSC(10;0.139)|Ovarian(42;0.142)		OV - Ovarian serous cystadenocarcinoma(31;0.00153)|BRCA - Breast invasive adenocarcinoma(9;0.239)			CCAATGATCTCCCCAGCCACT	0.537000													22	114					0	0	0.000720815	0	0
LRTM2	654429	broad.mit.edu	37	12	1943855	1943855	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr12:1943855G>A	uc001qjt.2	+	5	1887	c.1081G>A	c.(1081-1083)GAG>AAG	p.E361K	CACNA2D4_uc001qjp.2_Intron|CACNA2D4_uc009zds.1_Intron|CACNA2D4_uc009zdt.1_Intron|CACNA2D4_uc009zdr.1_Intron|LRTM2_uc001qju.2_Missense_Mutation_p.E361K|LRTM2_uc010sdx.1_Missense_Mutation_p.E361K|LRTM2_uc001qjv.2_Missense_Mutation_p.E123K	NM_001039029	NP_001034118	Q8N967	LRTM2_HUMAN	leucine-rich repeats and transmembrane domains 2	361	Cytoplasmic (Potential).					integral to membrane				large_intestine(1)	1	Ovarian(42;0.107)		OV - Ovarian serous cystadenocarcinoma(31;0.000834)			GGGCGAGCACGAGGACCAGAA	0.662000													5	33					0	0	0.00198382	0	0
KCNA6	3742	broad.mit.edu	37	12	4919974	4919974	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr12:4919974G>A	uc001qng.2	+	1	1633	c.767G>A	c.(766-768)GGC>GAC	p.G256D		NM_002235	NP_002226	P17658	KCNA6_HUMAN	potassium voltage-gated channel, shaker-related	256						voltage-gated potassium channel complex	voltage-gated potassium channel activity			skin(2)|ovary(1)	3						ACTCTTGGGGGCTCCTTCTTT	0.562000										HNSCC(72;0.22)			12	77					0	0	0.000978159	0	0
PLBD1	79887	broad.mit.edu	37	12	14689527	14689527	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr12:14689527C>T	uc001rcc.1	-	5	837	c.676G>A	c.(676-678)GGA>AGA	p.G226R		NM_024829	NP_079105	Q6P4A8	PLBL1_HUMAN	phospholipase B domain containing 1	226					lipid catabolic process	extracellular region	hydrolase activity				0						GAGCAATGTCCCATGTCCCAT	0.428000													8	50					0	0	0.000274275	0	0
IFLTD1	160492	broad.mit.edu	37	12	25679737	25679737	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr12:25679737G>A	uc001rgs.2	-	4	731	c.581C>T	c.(580-582)CCA>CTA	p.P194L	IFLTD1_uc001rgt.1_Missense_Mutation_p.P97L|IFLTD1_uc010sji.1_Missense_Mutation_p.P215L|IFLTD1_uc010sjj.1_Missense_Mutation_p.P131L|IFLTD1_uc009zjc.2_Missense_Mutation_p.P215L	NM_152590	NP_689803	Q8N9Z9	ILFT1_HUMAN	intermediate filament tail domain containing 1	194						intermediate filament	structural molecule activity			ovary(2)|central_nervous_system(1)	3	all_lung(3;2.75e-22)|Lung NSC(3;1.77e-21)|all_hematologic(7;0.00656)|Colorectal(261;0.0847)					TACGATGTTTGGAAGGAATCG	0.368000													9	55					0	0	0.000673444	0	0
SMARCD1	6602	broad.mit.edu	37	12	50492783	50492783	+	Silent	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr12:50492783G>A	uc001rvx.3	+	13	1718	c.1548G>A	c.(1546-1548)TAG>TAA	p.*516*	SMARCD1_uc001rvy.3_Silent_p.*475*|SMARCD1_uc009zlp.2_Silent_p.*475*	NM_003076	NP_003067	Q96GM5	SMRD1_HUMAN	SWI/SNF-related matrix-associated	516					chromatin-mediated maintenance of transcription|nervous system development|regulation of transcription from RNA polymerase II promoter	nBAF complex|npBAF complex|nucleoplasm|SWI/SNF complex	protein complex scaffold|transcription coactivator activity			ovary(1)	1						GGAATACATAGGGCCTCTCCC	0.517000													6	44					0	0	0.00116845	0	0
LARP4	113251	broad.mit.edu	37	12	50860811	50860811	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr12:50860811C>T	uc001rwp.1	+	13	1597	c.1453C>T	c.(1453-1455)CCA>TCA	p.P485S	LARP4_uc001rwo.1_Missense_Mutation_p.P491S|LARP4_uc001rwq.1_Missense_Mutation_p.P414S|LARP4_uc001rwr.1_Missense_Mutation_p.P414S|LARP4_uc001rws.1_Missense_Mutation_p.P484S|LARP4_uc009zlr.1_Missense_Mutation_p.P304S|LARP4_uc001rwt.1_Missense_Mutation_p.P76S	NM_052879	NP_443111	Q71RC2	LARP4_HUMAN	c-Mpl binding protein isoform a	485							nucleotide binding|RNA binding			ovary(1)	1						CTCAAATTTTCCACCTTTACC	0.378000													9	75					0	0	0.000274275	0	0
DIP2B	57609	broad.mit.edu	37	12	51069147	51069147	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr12:51069147C>T	uc001rwv.2	+	7	988	c.832C>T	c.(832-834)CAG>TAG	p.Q278*	DIP2B_uc001rwu.2_Nonsense_Mutation_p.Q278*|DIP2B_uc009zls.1_Nonsense_Mutation_p.Q160*	NM_173602	NP_775873	Q9P265	DIP2B_HUMAN	DIP2 disco-interacting protein 2 homolog B	278						nucleus	catalytic activity|transcription factor binding			ovary(4)|breast(1)|pancreas(1)	6						TACAAAAATCCAGCAGCTTCT	0.368000													9	60					0	0	0.000274275	0	0
KRT6C	286887	broad.mit.edu	37	12	52863467	52863467	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr12:52863467C>T	uc001sal.3	-	7	1459	c.1411G>A	c.(1411-1413)GGC>AGC	p.G471S		NM_173086	NP_775109	P48668	K2C6C_HUMAN	keratin 6C	471	Rod.|Coil 2.				cytoskeleton organization	keratin filament	structural molecule activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(357;0.0828)		CACTCCTCGCCCTCCAGCAGC	0.577000													7	54					0	0	0.000274275	0	0
KRT76	51350	broad.mit.edu	37	12	53165685	53165685	+	Silent	SNP	T	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr12:53165685T>A	uc001sax.2	-	6	1287	c.1233A>T	c.(1231-1233)CTA>CTT	p.L411L		NM_015848	NP_056932	Q01546	K22O_HUMAN	keratin 76	411	Rod.|Coil 2.				cytoskeleton organization	keratin filament	structural molecule activity			breast(1)|skin(1)	2						TCTCAGCCCGTAGCCTCTGGA	0.562000													8	87					0	0	0.000157383	0	0
OASL	8638	broad.mit.edu	37	12	121458456	121458456	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr12:121458456C>T	uc001tzj.1	-	6	1459	c.1453G>A	c.(1453-1455)GAC>AAC	p.D485N	OASL_uc001tzk.1_3'UTR	NM_003733	NP_003724	Q15646	OASL_HUMAN	2'-5'-oligoadenylate synthetase-like isoform a	485	Ubiquitin-like 2.				interferon-gamma-mediated signaling pathway|type I interferon-mediated signaling pathway	cytoplasm|nucleolus	ATP binding|DNA binding|double-stranded RNA binding|thyroid hormone receptor binding|transferase activity			skin(1)	1	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					CCCAACCAGTCCTGCAGGACT	0.522000													37	271					0	0	0.00128727	0	0
CCDC62	84660	broad.mit.edu	37	12	123297851	123297851	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr12:123297851C>T	uc001udc.2	+	11	2031	c.1886C>T	c.(1885-1887)TCG>TTG	p.S629L	CCDC62_uc010tah.1_RNA|CCDC62_uc001udf.2_Missense_Mutation_p.S629L|CCDC62_uc001ude.2_Missense_Mutation_p.S390L	NM_201435	NP_958843	Q6P9F0	CCD62_HUMAN	coiled-coil domain containing 62 isoform b	629						cytoplasm|nucleus				ovary(2)|large_intestine(1)|pancreas(1)|skin(1)	5	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;6.51e-06)|Epithelial(86;2.65e-05)|BRCA - Breast invasive adenocarcinoma(302;0.206)		GATGATTTCTCGCCCACGAGC	0.493000													14	69					0	0	0.00244969	0	0
TMEM132B	114795	broad.mit.edu	37	12	126003993	126003993	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr12:126003993G>A	uc001uhe.1	+	4	1108	c.1100G>A	c.(1099-1101)GGA>GAA	p.G367E		NM_052907	NP_443139	Q14DG7	T132B_HUMAN	transmembrane protein 132B	367	Extracellular (Potential).					integral to membrane				skin(11)|ovary(5)|large_intestine(1)|pancreas(1)|breast(1)	19	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000423)|Epithelial(86;0.00394)|all cancers(50;0.0362)		AGGGTAAATGGATCCTTCTAT	0.413000													8	79					0	0	0.000442599	0	0
POLE	5426	broad.mit.edu	37	12	133245029	133245029	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr12:133245029G>A	uc001uks.1	-	19	2130	c.2086C>T	c.(2086-2088)CCC>TCC	p.P696S	POLE_uc010tbq.1_RNA|POLE_uc009zyu.1_Missense_Mutation_p.P669S	NM_006231	NP_006222	Q07864	DPOE1_HUMAN	DNA-directed DNA polymerase epsilon	696					base-excision repair, gap-filling|DNA synthesis involved in DNA repair|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|nucleotide-excision repair, DNA gap filling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	nucleoplasm	chromatin binding|DNA binding|DNA-directed DNA polymerase activity|nucleotide binding|protein binding|zinc ion binding			ovary(3)|skin(3)|lung(1)|central_nervous_system(1)	8	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0416)		OV - Ovarian serous cystadenocarcinoma(86;5.22e-08)|Epithelial(86;4.03e-07)|all cancers(50;1.18e-05)		AACAAGGGGGGGAACTTCTCT	0.602000								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					6	78					0	0	0.00198382	0	0
LOC284232	284232	broad.mit.edu	37	13	19428991	19428991	+	RNA	SNP	G	C	C			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr13:19428991G>C	uc010tcj.1	-	1		c.17119C>G				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						ACACTTTCTCGGGGACACACT	0.323000													12	91					0	0	0.000308642	0	0
KL	9365	broad.mit.edu	37	13	33638084	33638084	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr13:33638084C>T	uc001uus.2	+	5	2808	c.2800C>T	c.(2800-2802)CAG>TAG	p.Q934*		NM_004795	NP_004786	Q9UEF7	KLOT_HUMAN	klotho precursor	934	Glycosyl hydrolase-1 2.|Extracellular (Potential).				aging|carbohydrate metabolic process|insulin receptor signaling pathway|positive regulation of bone mineralization	extracellular space|extracellular space|integral to membrane|integral to plasma membrane|membrane fraction|soluble fraction	beta-glucosidase activity|beta-glucuronidase activity|cation binding|fibroblast growth factor binding|hormone activity|signal transducer activity|vitamin D binding			large_intestine(1)|ovary(1)|skin(1)	3	all_epithelial(80;0.133)	Ovarian(182;1.78e-06)|Breast(139;4.08e-05)|Hepatocellular(188;0.00886)|Lung SC(185;0.0262)		GBM - Glioblastoma multiforme(144;7.13e-230)|all cancers(112;1.33e-165)|OV - Ovarian serous cystadenocarcinoma(117;1.09e-113)|Epithelial(112;3.79e-112)|Lung(94;8.52e-27)|LUSC - Lung squamous cell carcinoma(192;1.4e-13)|Kidney(163;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(186;5.63e-08)|BRCA - Breast invasive adenocarcinoma(63;1.41e-05)		TGCTGCAGATCAGTTTGAGCC	0.448000													17	99					0	0	0.000566183	0	0
NBEA	26960	broad.mit.edu	37	13	36229105	36229105	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr13:36229105G>A	uc001uvb.2	+	53	8292	c.8086G>A	c.(8086-8088)GGA>AGA	p.G2696R	NBEA_uc010abi.2_Missense_Mutation_p.G1352R|NBEA_uc010tef.1_Missense_Mutation_p.G489R|NBEA_uc001uvd.2_Missense_Mutation_p.G274R	NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	2696						cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		TCTTATCTGTGGATTCTGGGA	0.358000													5	18					0	0	0.00198382	0	0
TRPC4	7223	broad.mit.edu	37	13	38248490	38248490	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr13:38248490C>T	uc001uws.2	-	5	1484	c.1249G>A	c.(1249-1251)GAA>AAA	p.E417K	TRPC4_uc010abv.2_5'UTR|TRPC4_uc001uwt.2_Missense_Mutation_p.E417K|TRPC4_uc010tey.1_Missense_Mutation_p.E417K|TRPC4_uc010abw.2_Missense_Mutation_p.E244K|TRPC4_uc010abx.2_Missense_Mutation_p.E417K|TRPC4_uc010aby.2_Missense_Mutation_p.E417K	NM_016179	NP_057263	Q9UBN4	TRPC4_HUMAN	transient receptor potential cation channel,	417	Cytoplasmic (Potential).				axon guidance|calcium ion import	basolateral plasma membrane|calcium channel complex|cell surface|cortical cytoskeleton	beta-catenin binding|cadherin binding|store-operated calcium channel activity			ovary(3)|skin(2)|breast(1)	6				all cancers(112;1.92e-08)|Epithelial(112;5.04e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000677)|GBM - Glioblastoma multiforme(144;0.00623)|BRCA - Breast invasive adenocarcinoma(63;0.0126)		TGTTTAATTTCTCCCCATATG	0.313000													4	41					0	0	0.00024832	0	0
LOC220429	220429	broad.mit.edu	37	13	50466990	50466990	+	Missense_Mutation	SNP	T	C	C	rs144184696	by1000genomes	TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr13:50466990T>C	uc001vdk.2	+	1	2446	c.2264T>C	c.(2263-2265)CTG>CCG	p.L755P		NR_003268				Homo sapiens CTAGE family, member 5 pseudogene, mRNA (cDNA clone IMAGE:5270026).												0						GTCTGTCCACTGAGGGGTTTT	0.517000													4	48					0	0	0.00024832	0	0
NEK5	341676	broad.mit.edu	37	13	52676141	52676141	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr13:52676141C>T	uc001vge.2	-	11	960	c.820G>A	c.(820-822)GAA>AAA	p.E274K	NEK5_uc001vgf.2_Missense_Mutation_p.E274K	NM_199289	NP_954983	Q6P3R8	NEK5_HUMAN	NIMA-related kinase 5	274							ATP binding|metal ion binding|protein serine/threonine kinase activity			upper_aerodigestive_tract(1)	1		Breast(56;0.00173)|Lung NSC(96;0.0168)|Prostate(109;0.0412)|Hepatocellular(98;0.152)|Glioma(44;0.236)		GBM - Glioblastoma multiforme(99;3.7e-08)		CTGAATTCTTCCTGAATGACC	0.463000													6	46					0	0	0.00116845	0	0
PCDH9	5101	broad.mit.edu	37	13	67205505	67205505	+	Silent	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr13:67205505G>A	uc001vik.2	-	4	3869	c.3177C>T	c.(3175-3177)TCC>TCT	p.S1059S	PCDH9_uc010aei.2_RNA|PCDH9_uc001vil.2_Silent_p.S1025S|PCDH9_uc010thl.1_Intron	NM_203487	NP_982354	Q9HC56	PCDH9_HUMAN	protocadherin 9 isoform 1 precursor	1059	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)|skin(1)	6		Hepatocellular(98;0.0906)|Breast(118;0.107)		GBM - Glioblastoma multiforme(99;0.00819)		AGCTTTCCTGGGAGCCATCAG	0.527000													4	21					0	0	0.00024832	0	0
FARP1	10160	broad.mit.edu	37	13	99042345	99042345	+	Silent	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr13:99042345C>T	uc001vnj.2	+	10	1326	c.990C>T	c.(988-990)CTC>CTT	p.L330L	FARP1_uc001vnh.2_Silent_p.L330L	NM_005766	NP_005757	Q9Y4F1	FARP1_HUMAN	FERM, RhoGEF, and pleckstrin domain protein 1	330					regulation of Rho protein signal transduction	cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding|Rho guanyl-nucleotide exchange factor activity			breast(2)	2	all_neural(89;0.0982)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)		BRCA - Breast invasive adenocarcinoma(86;0.233)			AGCCCGTCCTCTTTAGCCGGG	0.522000													13	115					0	0	0.000566183	0	0
OR4K5	79317	broad.mit.edu	37	14	20389351	20389351	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr14:20389351G>A	uc010tkw.1	+	1	586	c.586G>A	c.(586-588)GAA>AAA	p.E196K		NM_001005483	NP_001005483	Q8NGD3	OR4K5_HUMAN	olfactory receptor, family 4, subfamily K,	196	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		TTACATCATTGAAATACTAAT	0.408000													17	125					0	0	0.00074312	0	0
AKAP6	9472	broad.mit.edu	37	14	33292889	33292889	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr14:33292889T>C	uc001wrq.2	+	13	6040	c.5870T>C	c.(5869-5871)GTT>GCT	p.V1957A		NM_004274	NP_004265	Q13023	AKAP6_HUMAN	A-kinase anchor protein 6	1957					protein targeting	calcium channel complex|nuclear membrane|sarcoplasmic reticulum	protein kinase A binding|receptor binding			breast(6)|ovary(5)|lung(4)|skin(3)|large_intestine(2)|pancreas(1)	21	Breast(36;0.0388)|Prostate(35;0.15)		LUAD - Lung adenocarcinoma(48;0.00107)|Lung(238;0.00677)|STAD - Stomach adenocarcinoma(7;0.116)	GBM - Glioblastoma multiforme(265;0.019)		TCCCAAGATGTTAGACATCTT	0.388000													3	55					0	0	6.4e-05	0	0
AKAP6	9472	broad.mit.edu	37	14	33293351	33293351	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr14:33293351C>T	uc001wrq.2	+	13	6502	c.6332C>T	c.(6331-6333)TCG>TTG	p.S2111L		NM_004274	NP_004265	Q13023	AKAP6_HUMAN	A-kinase anchor protein 6	2111					protein targeting	calcium channel complex|nuclear membrane|sarcoplasmic reticulum	protein kinase A binding|receptor binding			breast(6)|ovary(5)|lung(4)|skin(3)|large_intestine(2)|pancreas(1)	21	Breast(36;0.0388)|Prostate(35;0.15)		LUAD - Lung adenocarcinoma(48;0.00107)|Lung(238;0.00677)|STAD - Stomach adenocarcinoma(7;0.116)	GBM - Glioblastoma multiforme(265;0.019)		GACTTTTATTCGTACTTATCT	0.463000													13	60					0	0	0.00136819	0	0
GPR137C	283554	broad.mit.edu	37	14	53099010	53099010	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr14:53099010G>A	uc001wzu.3	+	4	850	c.850G>A	c.(850-852)GAT>AAT	p.D284N	GPR137C_uc001wzt.3_Missense_Mutation_p.D300N	NM_001099652	NP_001093122	Q8N3F9	G137C_HUMAN	G protein-coupled receptor 137C	284	Extracellular (Potential).					integral to membrane					0	Breast(41;0.0716)					TTATGGCTGGGATAATCTTTC	0.368000													10	64					0	0	0.000978159	0	0
KCNH5	27133	broad.mit.edu	37	14	63174645	63174645	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr14:63174645C>T	uc001xfx.2	-	11	2599	c.2548G>A	c.(2548-2550)GAG>AAG	p.E850K	KCNH5_uc001xfy.2_3'UTR	NM_139318	NP_647479	Q8NCM2	KCNH5_HUMAN	potassium voltage-gated channel, subfamily H,	850	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	calmodulin binding|two-component sensor activity|voltage-gated potassium channel activity			ovary(4)|skin(4)|central_nervous_system(1)	9				OV - Ovarian serous cystadenocarcinoma(108;0.00958)|BRCA - Breast invasive adenocarcinoma(234;0.168)		ACACTGTTCTCTGAATCACTG	0.448000													16	87					0	0	0.00074312	0	0
FNTB	2342	broad.mit.edu	37	14	65470996	65470996	+	Silent	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr14:65470996C>T	uc001xia.2	+	2	339	c.174C>T	c.(172-174)GTC>GTT	p.V58V	FNTB_uc010tsl.1_Silent_p.V92V|FNTB_uc010tsm.1_Silent_p.V12V	NM_002028	NP_002019	P49356	FNTB_HUMAN	farnesyltransferase, CAAX box, beta	58					protein farnesylation	microtubule associated complex	protein binding|protein farnesyltransferase activity			ovary(1)	1				all cancers(60;0.00115)|OV - Ovarian serous cystadenocarcinoma(108;0.00412)|BRCA - Breast invasive adenocarcinoma(234;0.011)		TCCAAGAGGTCTTCAGTTCTT	0.443000													22	142					0	0	0.000586117	0	0
FUT8	2530	broad.mit.edu	37	14	66208871	66208871	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr14:66208871C>T	uc001xin.2	+	11	2668	c.1471C>T	c.(1471-1473)CAT>TAT	p.H491Y	FUT8_uc001xio.2_Missense_Mutation_p.H491Y|FUT8_uc010tsp.1_Missense_Mutation_p.H328Y|FUT8_uc001xir.3_RNA|FUT8_uc001xip.2_Missense_Mutation_p.H491Y|FUT8_uc001xiq.2_Missense_Mutation_p.H362Y|FUT8_uc001xis.2_Missense_Mutation_p.H85Y	NM_178155	NP_835368	Q9BYC5	FUT8_HUMAN	fucosyltransferase 8 isoform a	491	Lumenal (Potential).				in utero embryonic development|L-fucose catabolic process|N-glycan processing|oligosaccharide biosynthetic process|post-translational protein modification|protein glycosylation in Golgi|protein N-linked glycosylation via asparagine	Golgi cisterna membrane|integral to membrane	glycoprotein 6-alpha-L-fucosyltransferase activity|SH3 domain binding			ovary(1)	1				all cancers(60;0.00109)|OV - Ovarian serous cystadenocarcinoma(108;0.00242)|BRCA - Breast invasive adenocarcinoma(234;0.0114)		TGCAAACTTCCATTCTTTAGA	0.388000													13	49					0	0	0.00244969	0	0
MPP5	64398	broad.mit.edu	37	14	67745903	67745903	+	Missense_Mutation	SNP	A	C	C			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr14:67745903A>C	uc001xjc.2	+	3	482	c.16A>C	c.(16-18)ATG>CTG	p.M6L	MPP5_uc001xjd.2_Intron|MPP5_uc001xjb.1_Missense_Mutation_p.M6L	NM_022474	NP_071919	Q8N3R9	MPP5_HUMAN	membrane protein, palmitoylated 5	6					tight junction assembly	cytoplasm|endomembrane system|tight junction	protein domain specific binding			ovary(1)	1				all cancers(60;0.000388)|OV - Ovarian serous cystadenocarcinoma(108;0.00762)|BRCA - Breast invasive adenocarcinoma(234;0.0106)		AACATCCCATATGAATGGGCA	0.373000													3	23					0	0	0.00024832	0	0
RDH12	145226	broad.mit.edu	37	14	68196002	68196002	+	Silent	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr14:68196002C>T	uc001xjz.3	+	8	1077	c.753C>T	c.(751-753)TTC>TTT	p.F251F		NM_152443	NP_689656	Q96NR8	RDH12_HUMAN	retinol dehydrogenase 12	251					photoreceptor cell maintenance|response to stimulus|retinol metabolic process	intracellular	binding|retinol dehydrogenase activity			ovary(1)	1				all cancers(60;0.000704)|OV - Ovarian serous cystadenocarcinoma(108;0.00161)|BRCA - Breast invasive adenocarcinoma(234;0.00953)	Vitamin A(DB00162)	GGCGGCTCTTCTCCCCCTTTG	0.682000													9	77					0	0	0.000274275	0	0
YLPM1	56252	broad.mit.edu	37	14	75248353	75248353	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr14:75248353C>T	uc001xqj.3	+	4	1731	c.1607C>T	c.(1606-1608)CCA>CTA	p.P536L	YLPM1_uc001xql.3_RNA	NM_019589	NP_062535	P49750	YLPM1_HUMAN	YLP motif containing 1	343					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear speck				ovary(2)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(43;0.238)	BRCA - Breast invasive adenocarcinoma(234;0.00162)		ATGCCCCCTCCAGTGTTGCCT	0.532000													21	81					0	0	0.00278032	0	0
KCNK10	54207	broad.mit.edu	37	14	88652025	88652025	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr14:88652025C>T	uc001xwo.2	-	7	1928	c.1471G>A	c.(1471-1473)GAA>AAA	p.E491K	KCNK10_uc001xwm.2_Missense_Mutation_p.E496K|KCNK10_uc001xwn.2_Missense_Mutation_p.E496K	NM_021161	NP_066984	P57789	KCNKA_HUMAN	potassium channel, subfamily K, member 10	491	Cytoplasmic (Potential).				signal transduction	integral to membrane	potassium channel activity|voltage-gated ion channel activity			ovary(2)|skin(2)|pancreas(1)	5						CACATCTTTTCCGTCTCCTCC	0.502000													7	65					0	0	0.000157383	0	0
C14orf159	80017	broad.mit.edu	37	14	91639672	91639672	+	Missense_Mutation	SNP	C	T	T	rs148167595	byFrequency	TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr14:91639672C>T	uc001xzb.2	+	8	1249	c.481C>T	c.(481-483)CCT>TCT	p.P161S	C14orf159_uc010atv.1_RNA|C14orf159_uc001xyy.2_Missense_Mutation_p.P166S|C14orf159_uc001xyx.2_Missense_Mutation_p.P161S|C14orf159_uc001xyw.2_Missense_Mutation_p.P166S|C14orf159_uc001xzc.2_Missense_Mutation_p.P161S|C14orf159_uc001xza.2_Missense_Mutation_p.P166S|C14orf159_uc001xyv.2_Missense_Mutation_p.P166S|C14orf159_uc001xyz.2_Missense_Mutation_p.P37S|C14orf159_uc001xze.2_Missense_Mutation_p.P161S	NM_001102366	NP_001095836	Q7Z3D6	CN159_HUMAN	hypothetical protein LOC80017 isoform a	161						mitochondrion				central_nervous_system(2)|ovary(1)	3		all_cancers(154;0.0191)|all_epithelial(191;0.241)		Epithelial(152;0.141)|OV - Ovarian serous cystadenocarcinoma(161;0.207)		CTTCTGCTGCCCTCTGGTGGT	0.502000											OREG0022869	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	9	66					0	0	0.000442599	0	0
KIAA1409	57578	broad.mit.edu	37	14	94160732	94160732	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr14:94160732G>A	uc001ybv.1	+	46	7257	c.7174G>A	c.(7174-7176)GAA>AAA	p.E2392K	KIAA1409_uc001ybs.1_Missense_Mutation_p.E2370K	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	2547						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		GGCATTGCAGGAATGCAATTC	0.338000													5	47					0	0	0.00198382	0	0
SERPINA3	12	broad.mit.edu	37	14	95088730	95088730	+	Silent	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr14:95088730C>T	uc001ydp.2	+	4	1049	c.970C>T	c.(970-972)CTG>TTG	p.L324L	SERPINA3_uc001ydo.3_Silent_p.L349L|SERPINA3_uc001ydr.2_RNA|SERPINA3_uc001ydq.2_Silent_p.L324L|SERPINA3_uc001yds.2_Silent_p.L324L|SERPINA3_uc010avg.2_Silent_p.L324L	NM_001085	NP_001076	P01011	AACT_HUMAN	serpin peptidase inhibitor, clade A, member 3	324					acute-phase response|maintenance of gastrointestinal epithelium|regulation of lipid metabolic process|regulation of proteolysis	extracellular region|nucleus	DNA binding|protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(2)|large_intestine(1)|skin(1)	6		all_cancers(154;0.0525)|all_epithelial(191;0.179)		COAD - Colon adenocarcinoma(157;0.212)|Epithelial(152;0.228)		GGACTATAACCTGAACGACAT	0.498000													8	51					0	0	0.000673444	0	0
AK7	122481	broad.mit.edu	37	14	96916165	96916165	+	Silent	SNP	G	A	A	rs140878553	byFrequency	TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr14:96916165G>A	uc001yfn.2	+	9	941	c.897G>A	c.(895-897)GGG>GGA	p.G299G		NM_152327	NP_689540	Q96M32	KAD7_HUMAN	adenylate kinase 7	299	Potential.				cell projection organization	cytosol	adenylate kinase activity|ATP binding|cytidylate kinase activity			ovary(1)	1		all_cancers(154;0.0482)|all_epithelial(191;0.128)|Melanoma(154;0.155)		Epithelial(152;0.134)|COAD - Colon adenocarcinoma(157;0.228)		CTGGCCCTGGGAAAATCCAGA	0.308000													8	32					0	0	0.000673444	0	0
RTL1	388015	broad.mit.edu	37	14	101348154	101348154	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr14:101348154C>T	uc010txj.1	-	1	3031	c.2972G>A	c.(2971-2973)CGA>CAA	p.R991Q	MIR433_hsa-mir-433|MI0001723_5'Flank|uc001yig.3_5'Flank|MIR127_hsa-mir-127|MI0000472_5'Flank|MIR432_hsa-mir-432|MI0003133_5'Flank|uc010txk.1_5'Flank|MIR136_hsa-mir-136|MI0000475_5'Flank	NM_001134888	NP_001128360	A6NKG5	RTL1_HUMAN	retrotransposon-like 1	991										pancreas(1)	1						TGGCAGAGCTCGGCCGCCGTC	0.587000													5	41					0	0	0.000602214	0	0
MIR329-1	574408	broad.mit.edu	37	14	101493169	101493169	+	RNA	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr14:101493169G>A	hsa-mir-329-1|MI0001725	+			c.48G>A			MIR329-2_hsa-mir-329-2|MI0001726_5'Flank|MIR494_hsa-mir-494|MI0003134_5'Flank|uc010txm.1_5'Flank																	0						TAATGAGGACGAAACACACCT	0.468000													12	78					0	0	0.000308642	0	0
DYNC1H1	1778	broad.mit.edu	37	14	102483833	102483833	+	Silent	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr14:102483833C>T	uc001yks.2	+	40	8333	c.8169C>T	c.(8167-8169)CTC>CTT	p.L2723L	DYNC1H1_uc001ykt.1_Silent_p.L214L	NM_001376	NP_001367	Q14204	DYHC1_HUMAN	cytoplasmic dynein 1 heavy chain 1	2723	AAA 3 (By similarity).				cytoplasmic mRNA processing body assembly|G2/M transition of mitotic cell cycle|microtubule-based movement|mitotic spindle organization|stress granule assembly|transport	centrosome|cytoplasmic dynein complex|cytosol|Golgi apparatus|microtubule	ATP binding|ATPase activity, coupled|microtubule motor activity|protein binding			ovary(7)|central_nervous_system(2)|pancreas(1)	10						GAAAGCCCCTCTCACACAGGT	0.498000													15	58					0	0	0.000308642	0	0
ADAM6	8755	broad.mit.edu	37	14	107078450	107078450	+	RNA	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr14:107078450C>T	uc010tyt.1	-	117		c.5840G>A								Parts of antibodies, mostly variable regions.												0						GTGGACATGTCCCTGGTAATG	0.537000													16	140					0	0	0.000308642	0	0
ADAM6	8755	broad.mit.edu	37	14	107087369	107087369	+	Splice_Site	SNP	C	G	G	rs59128688	by1000genomes	TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr14:107087369C>G	uc010tyt.1	-	109		c.5047_splice	c.e109-1							Parts of antibodies, mostly variable regions.												0						ACTCCAAACCCTTTCCTGGAG	0.507000													8	24					0	0	0.000274275	0	0
C15orf2	23742	broad.mit.edu	37	15	24921893	24921893	+	Silent	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr15:24921893G>A	uc001ywo.2	+	1	1353	c.879G>A	c.(877-879)CCG>CCA	p.P293P		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	293	Pro-rich.				cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		TAGGCTTGCCGATTCCGCTGA	0.622000													16	56					0	0	0.000958276	0	0
C15orf2	23742	broad.mit.edu	37	15	24921998	24921998	+	Silent	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr15:24921998G>A	uc001ywo.2	+	1	1458	c.984G>A	c.(982-984)AGG>AGA	p.R328R		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	328	Pro-rich.				cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		CCTGCAAAAGGAAAATGTCGA	0.587000													9	48					0	0	0.000274275	0	0
RYR3	6263	broad.mit.edu	37	15	34118875	34118875	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr15:34118875G>A	uc001zhi.2	+	84	11237	c.11167G>A	c.(11167-11169)GAA>AAA	p.E3723K	RYR3_uc010bar.2_Missense_Mutation_p.E3718K	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	3723					cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		TTTTCAAGGTGAAAAAGTACT	0.403000													20	150					0	0	0.00152264	0	0
BUB1B	701	broad.mit.edu	37	15	40494609	40494609	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr15:40494609C>T	uc001zkx.3	+	13	1783	c.1571C>T	c.(1570-1572)CCC>CTC	p.P524L	BUB1B_uc010ucl.1_Missense_Mutation_p.P392L	NM_001211	NP_001202	O60566	BUB1B_HUMAN	budding uninhibited by benzimidazoles 1 beta	524					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|cell division|cell proliferation|mitotic cell cycle spindle assembly checkpoint|mitotic prometaphase|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|phosphatidylinositol-mediated signaling|protein localization to kinetochore|spindle organization	anaphase-promoting complex|condensed chromosome outer kinetochore|cytosol|microtubule organizing center|perinuclear region of cytoplasm|spindle midzone	ATP binding|protein binding|protein serine/threonine kinase activity			stomach(2)|ovary(1)|kidney(1)	4		all_cancers(109;1.12e-18)|all_epithelial(112;1.61e-15)|Lung NSC(122;5.63e-11)|all_lung(180;1.4e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;1.83e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0556)		TCTCTAGGTCCCAGTGTACCT	0.303000			Mis|N|F|S			rhabdomyosarcoma			Mosaic_Variegated_Aneuploidy_Syndrome				11	53					0	0	0.000978159	0	0
ZFP106	64397	broad.mit.edu	37	15	42743200	42743200	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr15:42743200G>A	uc001zpw.2	-	2	1536	c.1201C>T	c.(1201-1203)CCA>TCA	p.P401S	ZFP106_uc001zpu.2_5'Flank|ZFP106_uc001zpv.2_Intron|ZFP106_uc001zpx.2_Intron|ZFP106_uc010udh.1_Missense_Mutation_p.P184S|ZFP106_uc001zpy.1_Missense_Mutation_p.P424S	NM_022473	NP_071918	Q9H2Y7	ZF106_HUMAN	zinc finger protein 106 homolog	401						nucleolus	zinc ion binding			central_nervous_system(2)|ovary(1)	3		all_cancers(109;1.63e-12)|all_epithelial(112;3.97e-11)|Lung NSC(122;2.04e-07)|all_lung(180;8.31e-07)|Melanoma(134;0.091)		GBM - Glioblastoma multiforme(94;8.6e-07)		TTCTGTGTTGGGGAATTACGT	0.428000													21	163					0	0	0.00278032	0	0
MYO5C	55930	broad.mit.edu	37	15	52497304	52497304	+	Silent	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr15:52497304G>A	uc010bff.2	-	38	4715	c.4578C>T	c.(4576-4578)TCC>TCT	p.S1526S	MYO5C_uc010uga.1_RNA|uc002abv.2_RNA	NM_018728	NP_061198	Q9NQX4	MYO5C_HUMAN	myosin VC	1526	Dilute.					myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(7)|central_nervous_system(3)|large_intestine(2)|skin(2)	14				all cancers(107;0.0137)		GCTTCAGGCCGGAAATGCCCT	0.597000													19	79					0	0	0.000958276	0	0
CSNK1G1	53944	broad.mit.edu	37	15	64495289	64495289	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr15:64495289G>A	uc002anf.2	-	10	1579	c.1099C>T	c.(1099-1101)CGA>TGA	p.R367*	CSNK1G1_uc002ane.2_RNA|CSNK1G1_uc002ang.1_Nonsense_Mutation_p.R367*|CSNK1G1_uc002anh.1_Nonsense_Mutation_p.R367*|CSNK1G1_uc002anj.2_Nonsense_Mutation_p.R349*	NM_022048	NP_071331	Q9HCP0	KC1G1_HUMAN	casein kinase 1, gamma 1	367					Wnt receptor signaling pathway	cytoplasm	ATP binding|protein serine/threonine kinase activity				0						ACCTGATTTCGAAGAGGCTGC	0.453000													14	39					0	0	0.00185496	0	0
BNC1	646	broad.mit.edu	37	15	83932596	83932596	+	Silent	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr15:83932596G>A	uc002bjt.1	-	4	1495	c.1407C>T	c.(1405-1407)TTC>TTT	p.F469F	BNC1_uc010uos.1_Silent_p.F457F	NM_001717	NP_001708	Q01954	BNC1_HUMAN	basonuclin 1	469					epidermis development|positive regulation of cell proliferation	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3						CAATGTTTGGGAAGGCTGGTT	0.547000													15	43					0	0	0.00244969	0	0
MCTP2	55784	broad.mit.edu	37	15	94883438	94883438	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr15:94883438G>A	uc002btj.2	+	5	856	c.791G>A	c.(790-792)CGA>CAA	p.R264Q	MCTP2_uc010urg.1_Missense_Mutation_p.R264Q|MCTP2_uc002bti.2_Missense_Mutation_p.R264Q|MCTP2_uc010boj.2_5'UTR|MCTP2_uc010bok.2_Missense_Mutation_p.R264Q|MCTP2_uc002btg.3_Missense_Mutation_p.R264Q|MCTP2_uc002bth.3_Missense_Mutation_p.R264Q	NM_018349	NP_060819	Q6DN12	MCTP2_HUMAN	multiple C2 domains, transmembrane 2 isoform 1	264	C2 1.				calcium-mediated signaling	integral to membrane|membrane fraction	calcium ion binding			ovary(1)|pancreas(1)|skin(1)	3	Lung NSC(78;0.0821)|all_lung(78;0.148)		BRCA - Breast invasive adenocarcinoma(143;0.0323)|OV - Ovarian serous cystadenocarcinoma(32;0.0593)			GTATATGATCGAGATTTAACC	0.318000													25	109					0	0	0.000586117	0	0
LASS3	204219	broad.mit.edu	37	15	101009590	101009590	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr15:101009590G>A	uc002bvz.2	-	11	1340	c.838C>T	c.(838-840)CCT>TCT	p.P280S	LASS3_uc002bwa.2_Missense_Mutation_p.P291S|LASS3_uc002bwb.2_Missense_Mutation_p.P280S	NM_178842	NP_849164	Q8IU89	CERS3_HUMAN	LAG1 longevity assurance homolog 3	280	Helical; (Potential).|TLC.					endoplasmic reticulum membrane|integral to membrane|nuclear membrane	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|sphingosine N-acyltransferase activity			ovary(2)|pancreas(1)|skin(1)	4	Lung NSC(78;0.0018)|all_lung(78;0.00278)|Melanoma(26;0.00852)		OV - Ovarian serous cystadenocarcinoma(32;0.000867)|LUSC - Lung squamous cell carcinoma(107;0.132)|Lung(145;0.161)			CACCAGAAAGGAAAAACAATG	0.493000													9	61					0	0	0.000673444	0	0
Unknown	0	broad.mit.edu	37	15	102292820	102292820	+	Silent	SNP	G	C	C			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr15:102292820G>C	uc010usj.1	+	4	467	c.408G>C	c.(406-408)ACG>ACC	p.T136T	uc002bxo.2_RNA|uc002bxp.3_5'Flank|uc002bxt.2_5'Flank|uc002bxz.3_5'Flank|uc002byd.2_5'Flank|uc002bye.2_5'Flank|uc002byf.1_5'Flank|uc002byg.2_5'Flank|uc002byi.2_5'Flank|uc002byk.2_5'Flank|uc002bym.2_5'Flank|uc002byn.2_5'Flank|uc010usm.1_5'Flank|uc002byr.2_5'Flank					RecName: Full=Uncharacterized protein C15orf51.; Flags: Fragment;																		GCGTGGGAACGAGAAGACACT	0.592000													3	7					0	0	0.00024832	0	0
CLCN7	1186	broad.mit.edu	37	16	1498384	1498384	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr16:1498384G>A	uc002clv.2	-	21	2095	c.1985C>T	c.(1984-1986)CCC>CTC	p.P662L	CLCN7_uc010brq.1_Missense_Mutation_p.P32L|CLCN7_uc002clu.2_Missense_Mutation_p.P110L|CLCN7_uc002clw.2_Missense_Mutation_p.P638L	NM_001287	NP_001278	P51798	CLCN7_HUMAN	chloride channel 7 isoform a	662	Cytoplasmic (By similarity).|CBS 1.					integral to membrane|lysosomal membrane	antiporter activity|ATP binding|voltage-gated chloride channel activity			central_nervous_system(2)|ovary(1)|skin(1)	4		Hepatocellular(780;0.0893)				CTCCACCACGGGGAAGCCGTT	0.622000													5	24					0	0	0.000602214	0	0
GRIN2A	2903	broad.mit.edu	37	16	9858085	9858085	+	Silent	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr16:9858085G>A	uc002czo.3	-	13	3864	c.3316C>T	c.(3316-3318)CTG>TTG	p.L1106L	GRIN2A_uc010uym.1_Silent_p.L1106L|GRIN2A_uc010uyn.1_Silent_p.L949L|GRIN2A_uc002czr.3_Silent_p.L1106L	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	1106	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	TTGGTTTTCAGGTAGGTGCGC	0.463000													8	119					0	0	0.000157383	0	0
GRIN2A	2903	broad.mit.edu	37	16	9916194	9916194	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr16:9916194G>A	uc002czo.3	-	10	2643	c.2095C>T	c.(2095-2097)CCC>TCC	p.P699S	GRIN2A_uc010uym.1_Missense_Mutation_p.P699S|GRIN2A_uc010uyn.1_Missense_Mutation_p.P542S|GRIN2A_uc002czr.3_Missense_Mutation_p.P699S	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	699	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	TGCATGTAGGGATAGTTATTC	0.433000													6	46					0	0	0.00116845	0	0
TMC5	79838	broad.mit.edu	37	16	19490792	19490792	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr16:19490792C>T	uc002dgc.3	+	14	2958	c.2209C>T	c.(2209-2211)CTT>TTT	p.L737F	TMC5_uc010vaq.1_Missense_Mutation_p.L685F|TMC5_uc002dgb.3_Missense_Mutation_p.L737F|TMC5_uc010var.1_Missense_Mutation_p.L737F|TMC5_uc002dgd.1_Missense_Mutation_p.L491F|TMC5_uc002dge.3_Missense_Mutation_p.L491F|TMC5_uc002dgf.3_Missense_Mutation_p.L420F|TMC5_uc002dgg.3_Missense_Mutation_p.L378F	NM_001105248	NP_001098718	Q6UXY8	TMC5_HUMAN	transmembrane channel-like 5 isoform a	737	Helical; (Potential).					integral to membrane				skin(1)	1						CTACCGGCTCCTTCTGATGGA	0.483000													27	184					0	0	0.00178596	0	0
DNAH3	55567	broad.mit.edu	37	16	20974825	20974825	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr16:20974825G>A	uc010vbe.1	-	53	10381	c.10381C>T	c.(10381-10383)CCT>TCT	p.P3461S	DNAH3_uc010vbd.1_Missense_Mutation_p.P896S	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	3461					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		CAAGACCCAGGGAGTTGCTCC	0.532000													10	35					0	0	0.000673444	0	0
CACNG3	10368	broad.mit.edu	37	16	24268231	24268231	+	Silent	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr16:24268231G>A	uc002dmf.2	+	1	1356	c.156G>A	c.(154-156)AGG>AGA	p.R52R		NM_006539	NP_006530	O60359	CCG3_HUMAN	voltage-dependent calcium channel gamma-3	52					regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|endocytic vesicle membrane|voltage-gated calcium channel complex	voltage-gated calcium channel activity				0				GBM - Glioblastoma multiforme(48;0.0809)		AAACCAGCAGGAAGAATGAAG	0.438000													10	58					0	0	0.000673444	0	0
SEZ6L2	26470	broad.mit.edu	37	16	29883575	29883575	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr16:29883575G>A	uc002duq.3	-	16	2876	c.2636C>T	c.(2635-2637)TCG>TTG	p.S879L	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|SEZ6L2_uc002dup.3_Missense_Mutation_p.S822L|SEZ6L2_uc002dur.3_Missense_Mutation_p.S809L|SEZ6L2_uc002dus.3_Missense_Mutation_p.S778L|SEZ6L2_uc010vec.1_Missense_Mutation_p.S892L|SEZ6L2_uc010ved.1_Missense_Mutation_p.S848L	NM_201575	NP_963869	Q6UXD5	SE6L2_HUMAN	seizure related 6 homolog (mouse)-like 2 isoform	879	Cytoplasmic (Potential).					endoplasmic reticulum membrane|integral to membrane|plasma membrane				ovary(1)|skin(1)	2						GTGGGAGCCCGAGAAGCCGAA	0.597000													5	28					0	0	0.000602214	0	0
ABCC12	94160	broad.mit.edu	37	16	48138108	48138108	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr16:48138108G>A	uc002efc.1	-	20	3191	c.2845C>T	c.(2845-2847)CCT>TCT	p.P949S	ABCC12_uc002eey.1_RNA|ABCC12_uc002eez.1_RNA|ABCC12_uc002efa.1_RNA|ABCC12_uc002efb.1_Intron|ABCC12_uc002efd.1_RNA	NM_033226	NP_150229	Q96J65	MRP9_HUMAN	ATP-binding cassette protein C12	949	ABC transmembrane type-1 2.|Helical; (Potential).					integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3		all_cancers(37;0.0474)|all_lung(18;0.047)				AGGACAGCAGGAAACACAGCA	0.478000													10	68					0	0	0.000442599	0	0
SALL1	6299	broad.mit.edu	37	16	51171260	51171260	+	Silent	SNP	C	T	T	rs145953478		TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr16:51171260C>T	uc010vgs.1	-	3	3769	c.3738G>A	c.(3736-3738)GCG>GCA	p.A1246A	SALL1_uc010vgr.1_Silent_p.A1149A|SALL1_uc010cbv.2_Silent_p.A98A	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	1246					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			TGGCCTTCATCGCCAGCCCGT	0.562000													5	41					0	0	0.000602214	0	0
CES3	23491	broad.mit.edu	37	16	67000146	67000146	+	Splice_Site	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr16:67000146G>A	uc002eqt.2	+	7	893	c.820_splice	c.e7-1	p.K274_splice	CES3_uc010cdz.2_Splice_Site_p.K274_splice|CES3_uc010cea.2_Splice_Site|CES3_uc010viw.1_5'Flank	NM_024922	NP_079198	Q6UWW8	EST3_HUMAN	carboxylesterase 3 precursor							endoplasmic reticulum lumen	carboxylesterase activity|methyl indole-3-acetate esterase activity|methyl jasmonate esterase activity|methyl salicylate esterase activity			ovary(3)|central_nervous_system(2)	5		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0488)|Epithelial(162;0.127)		TTTGTCCCCAGAAAATCGCAA	0.567000													5	35					0	0	0.000602214	0	0
HYDIN	54768	broad.mit.edu	37	16	70955005	70955005	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr16:70955005C>T	uc002ezr.2	-	46	7399	c.7271G>A	c.(7270-7272)GGC>GAC	p.G2424D		NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	2425										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				GCTGACATCGCCCATGTTCCT	0.463000													6	81					0	0	0.00185496	0	0
PKD1L2	114780	broad.mit.edu	37	16	81253837	81253837	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr16:81253837G>A	uc002fgh.1	-	1	139	c.139C>T	c.(139-141)CGC>TGC	p.R47C	PKD1L2_uc002fgj.2_Missense_Mutation_p.R47C	NM_052892	NP_443124	Q7Z442	PK1L2_HUMAN	polycystin 1-like 2 isoform a	47	Extracellular (Potential).|C-type lectin.				neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity|sugar binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3						CGGAAGGTGCGTCCGAGTGGC	0.557000													9	58					0	0	0.000442599	0	0
ADAD2	161931	broad.mit.edu	37	16	84230329	84230329	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr16:84230329G>C	uc002fhr.2	+	9	1717	c.1603G>C	c.(1603-1605)GGG>CGG	p.G535R	ADAD2_uc002fhq.2_Missense_Mutation_p.G617R|uc002fhs.1_Intron	NM_001145400	NP_001138872	Q8NCV1	ADAD2_HUMAN	adenosine deaminase domain containing 2 isoform	535	A to I editase.				RNA processing	intracellular	adenosine deaminase activity|double-stranded RNA binding				0						CAGGGCTGTGGGGAAGCCCTA	0.672000													4	62					0	0	0.00024832	0	0
SPIRE2	84501	broad.mit.edu	37	16	89920709	89920709	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr16:89920709C>T	uc002foz.1	+	4	713	c.661C>T	c.(661-663)CGG>TGG	p.R221W	SPIRE2_uc010civ.1_Missense_Mutation_p.R136W|SPIRE2_uc010ciw.1_Missense_Mutation_p.R221W|SPIRE2_uc002fpa.1_Missense_Mutation_p.R173W|SPIRE2_uc010cix.1_Missense_Mutation_p.R90W	NM_032451	NP_115827	Q8WWL2	SPIR2_HUMAN	spire homolog 2	221					transport	cytoplasm|cytoskeleton	actin binding			central_nervous_system(1)	1		Lung NSC(15;5.15e-06)|all_lung(18;8.38e-06)|all_hematologic(23;0.0194)		BRCA - Breast invasive adenocarcinoma(80;0.0286)		GCAGAAGCTTCGGGAGGACGA	0.642000													4	9					0	0	0.00116845	0	0
ALOX12B	242	broad.mit.edu	37	17	7978985	7978985	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr17:7978985C>T	uc002gjy.1	-	12	1843	c.1582G>A	c.(1582-1584)GAG>AAG	p.E528K		NM_001139	NP_001130	O75342	LX12B_HUMAN	arachidonate 12-lipoxygenase, 12R type	528	Lipoxygenase.				epidermis development|leukotriene biosynthetic process		arachidonate 12-lipoxygenase activity|iron ion binding|lipoxygenase activity				0						GGATCACCCTCCACGGCTGCG	0.572000										Multiple Myeloma(8;0.094)			21	145					0	0	0.00047179	0	0
PER1	5187	broad.mit.edu	37	17	8051324	8051324	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr17:8051324G>A	uc002gkd.2	-	10	1463	c.1225C>T	c.(1225-1227)CAC>TAC	p.H409Y	PER1_uc010vuq.1_RNA|PER1_uc010vur.1_Missense_Mutation_p.H393Y	NM_002616	NP_002607	O15534	PER1_HUMAN	period 1	409	PAS 2.				circadian rhythm|entrainment of circadian clock|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	signal transducer activity			lung(2)|breast(2)|skin(2)|large_intestine(1)|ovary(1)|kidney(1)	9						CTCTTCTTGTGGATAGCCAGC	0.637000			T	ETV6	AML|CMML			Other_conserved_DNA_damage_response_genes					4	9					0	0	0.00024832	0	0
MYH13	8735	broad.mit.edu	37	17	10247202	10247202	+	Silent	SNP	C	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr17:10247202C>A	uc002gmk.1	-	16	1899	c.1809G>T	c.(1807-1809)CTG>CTT	p.L603L	MYH13_uc010vvf.1_Silent_p.L278L	NM_003802	NP_003793	Q9UKX3	MYH13_HUMAN	myosin, heavy polypeptide 13, skeletal muscle	603	Myosin head-like.				muscle contraction	muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|skin(2)	6						CAGTCTCGTTCAGGGGGTCCT	0.532000													10	45					9.70103e-10	4.22725e-09	0.000673444	1	0
MYH4	4622	broad.mit.edu	37	17	10364237	10364237	+	Silent	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr17:10364237C>T	uc002gmn.2	-	12	1254	c.1143G>A	c.(1141-1143)ACG>ACA	p.T381T	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	381	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						TGGTACCTTCCGTGCCATCTG	0.483000													9	51					0	0	0.000978159	0	0
MYH1	4619	broad.mit.edu	37	17	10397900	10397900	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr17:10397900C>T	uc002gmo.2	-	38	5651	c.5557G>A	c.(5557-5559)GAA>AAA	p.E1853K	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	1853	Potential.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						TAAGTGAGTTCCTTCACTTTT	0.383000													10	94					0	0	0.000978159	0	0
TRPV2	51393	broad.mit.edu	37	17	16335507	16335507	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr17:16335507G>C	uc002gpy.2	+	12	2249	c.1882G>C	c.(1882-1884)GCC>CCC	p.A628P	TRPV2_uc002gpz.2_Missense_Mutation_p.A198P	NM_016113	NP_057197	Q9Y5S1	TRPV2_HUMAN	transient receptor potential cation channel,	628	Helical; (Potential).				sensory perception	integral to plasma membrane|melanosome	calcium channel activity			ovary(1)	1				UCEC - Uterine corpus endometrioid carcinoma (92;0.0837)		GCTGCTGCTGGCCTACGTGCT	0.597000													6	46					0	0	0.00116845	0	0
Unknown	0	broad.mit.edu	37	17	20805855	20805856	+	RNA	DNP	CC	TT	TT			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr17:20805855_20805856CC>TT	uc002gyg.1	+	4		c.1039_1040CC>TT			uc002gyh.1_RNA					Homo sapiens cDNA FLJ32911 fis, clone TESTI2006210.																		TGACAAAGTCCCAGGTCTCATC	0.525000													6	27					0	0	6.4e-05	0	0
KRT28	162605	broad.mit.edu	37	17	38955977	38955977	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr17:38955977G>A	uc002hvh.1	-	1	235	c.169C>T	c.(169-171)CCT>TCT	p.P57S		NM_181535	NP_853513	Q7Z3Y7	K1C28_HUMAN	keratin 25D	57	Gly-rich.|Head.					cytoplasm|intermediate filament	structural molecule activity			ovary(1)	1		Breast(137;0.000301)				CTCCCACCAGGAACACTGCCC	0.562000													9	55					0	0	0.000442599	0	0
KRT40	125115	broad.mit.edu	37	17	39139319	39139319	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr17:39139319G>T	uc010cxh.1	-	4	670	c.509C>A	c.(508-510)GCC>GAC	p.A170D	KRT40_uc002hvq.1_RNA	NM_182497	NP_872303	Q6A162	K1C40_HUMAN	type I hair keratin KA36	170	Rod.|Coil 1B.					intermediate filament	structural molecule activity				0		Breast(137;0.00043)				GTCATCAGTGGCCAGTTTGCA	0.249000													11	167					0.00010058	0.000435936	0.00136819	1	0
KRT34	3885	broad.mit.edu	37	17	39535638	39535638	+	Silent	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr17:39535638G>A	uc002hwm.2	-	5	981	c.969C>T	c.(967-969)GCC>GCT	p.A323A		NM_021013	NP_066293	O76011	KRT34_HUMAN	keratin 34	323	Rod.|Coil 2.				epidermis development	intermediate filament	protein binding|structural molecule activity			central_nervous_system(1)	1		Breast(137;0.000496)				CGATCTCCAGGGCGTTGACTG	0.587000													5	50					0	0	0.00198382	0	0
KRT34	3885	broad.mit.edu	37	17	39538267	39538268	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr17:39538267_39538268CC>TT	uc002hwm.2	-	1	369_370	c.357_358GG>AA	c.(355-360)CTGGAG>CTAAAG	p.E120K		NM_021013	NP_066293	O76011	KRT34_HUMAN	keratin 34	120	Rod.|Coil 1A.				epidermis development	intermediate filament	protein binding|structural molecule activity			central_nervous_system(1)	1		Breast(137;0.000496)				TTGTCCCGCTCCAGCTGACGCA	0.594000													11	78					0	0	6.4e-05	0	0
KRT16	3868	broad.mit.edu	37	17	39768659	39768659	+	Silent	SNP	G	A	A	rs150457351		TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr17:39768659G>A	uc002hxg.3	-	1	421	c.282C>T	c.(280-282)TTC>TTT	p.F94F	JUP_uc010wfs.1_Intron	NM_005557	NP_005548	P08779	K1C16_HUMAN	keratin 16	94	Head.				cell proliferation|epidermis development	intermediate filament	protein binding|structural constituent of cytoskeleton			skin(1)	1		Breast(137;0.000307)				agccaccaccgaagccagcac	0.328000													7	21					0	0	0.000157383	0	0
GPATCH8	23131	broad.mit.edu	37	17	42475680	42475680	+	Silent	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr17:42475680G>A	uc002igw.1	-	8	3829	c.3765C>T	c.(3763-3765)TCC>TCT	p.S1255S	GPATCH8_uc002igv.1_Silent_p.S1177S|GPATCH8_uc010wiz.1_Silent_p.S1177S	NM_001002909	NP_001002909	Q9UKJ3	GPTC8_HUMAN	G patch domain containing 8	1255						intracellular	nucleic acid binding|zinc ion binding			ovary(2)|kidney(1)|skin(1)	4		Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.206)		TGCTATCCAGGGACTCCAGGG	0.597000													16	115					0	0	0.000566183	0	0
COL1A1	1277	broad.mit.edu	37	17	48263699	48263699	+	Silent	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr17:48263699C>T	uc002iqm.2	-	49	4110	c.3984G>A	c.(3982-3984)GAG>GAA	p.E1328E		NM_000088	NP_000079	P02452	CO1A1_HUMAN	alpha 1 type I collagen preproprotein	1328	Fibrillar collagen NC1.				axon guidance|blood vessel development|collagen biosynthetic process|collagen fibril organization|embryonic skeletal system development|leukocyte migration|platelet activation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell migration|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription, DNA-dependent|protein localization to nucleus|sensory perception of sound|skin morphogenesis|tooth mineralization|visual perception	collagen type I|extracellular space|plasma membrane	identical protein binding|platelet-derived growth factor binding		COL1A1/PDGFB(372)	soft_tissue(372)|central_nervous_system(7)|skin(1)|breast(1)|pancreas(1)	382					Collagenase(DB00048)|Palifermin(DB00039)	CGGTCATGCTCTCGCCGAACC	0.572000			T	PDGFB|USP6	dermatofibrosarcoma protuberans|aneurysmal bone cyst 		Osteogenesis imperfecta						6	80					0	0	0.00198382	0	0
TBC1D3P2	440452	broad.mit.edu	37	17	60348291	60348291	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr17:60348291G>A	uc002izq.2	-	7	596	c.484C>T	c.(484-486)CGA>TGA	p.R162*	TBC1D3P2_uc010woz.1_Intron|uc010wpa.1_5'Flank					SubName: Full=Putative uncharacterized protein TBC1D3E;												0						GTTCCGTATCGATCCCTGAAG	0.547000													17	125					0	0	0.00047179	0	0
SLC25A19	60386	broad.mit.edu	37	17	73282437	73282437	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr17:73282437C>T	uc002jns.3	-	2	1146	c.236G>A	c.(235-237)TGG>TAG	p.W79*	SLC25A19_uc010dge.2_Nonsense_Mutation_p.W79*|SLC25A19_uc002jnv.3_Nonsense_Mutation_p.W79*|SLC25A19_uc002jnu.3_Nonsense_Mutation_p.W79*|SLC25A19_uc002jnw.3_Nonsense_Mutation_p.W79*|SLC25A19_uc002jnt.3_Nonsense_Mutation_p.W79*	NM_021734	NP_068380	Q9HC21	TPC_HUMAN	solute carrier family 25, member 19	79	Solcar 1.					integral to membrane|mitochondrial inner membrane	binding|deoxynucleotide transmembrane transporter activity			ovary(1)	1	all_cancers(13;5.98e-08)|all_epithelial(9;1.16e-08)|Breast(9;3.1e-08)		all cancers(21;6.82e-07)|Epithelial(20;6.86e-06)			GTGTCCTTTCCAGAAAGCTGT	0.587000													11	72					0	0	0.000673444	0	0
KIAA0195	9772	broad.mit.edu	37	17	73488710	73488710	+	Silent	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr17:73488710C>T	uc002jnz.3	+	15	2027	c.1752C>T	c.(1750-1752)CCC>CCT	p.P584P	KIAA0195_uc010wsa.1_Silent_p.P594P|KIAA0195_uc010wsb.1_Silent_p.P224P|KIAA0195_uc002job.3_5'Flank	NM_014738	NP_055553	Q12767	K0195_HUMAN	hypothetical protein LOC9772	584					ATP biosynthetic process|cation transport	integral to membrane	ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism			ovary(1)	1	all_cancers(13;3.15e-09)|all_epithelial(9;5.94e-10)|Breast(9;1.85e-09)|all_lung(278;0.246)		all cancers(21;5.01e-07)|Epithelial(20;5e-06)|Lung(188;0.0809)|LUSC - Lung squamous cell carcinoma(166;0.154)			CCCTCAAACCCCTGGGCCTCA	0.607000													5	48					0	0	0.000602214	0	0
QRICH2	84074	broad.mit.edu	37	17	74289060	74289060	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr17:74289060C>G	uc002jrd.1	-	4	1430	c.1250G>C	c.(1249-1251)CGT>CCT	p.R417P	QRICH2_uc010wsz.1_Missense_Mutation_p.R343P|QRICH2_uc010dgw.1_Intron	NM_032134	NP_115510	Q9H0J4	QRIC2_HUMAN	glutamine rich 2	417	Gln-rich.						protein binding			ovary(1)|pancreas(1)|lung(1)|central_nervous_system(1)|skin(1)	5						ATATGCACCACGCTGCACCAA	0.284000													3	23					0	0	6.4e-05	0	0
CLUL1	27098	broad.mit.edu	37	18	627154	627154	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr18:627154G>A	uc002kkp.2	+	5	626	c.481G>A	c.(481-483)GAA>AAA	p.E161K	CLUL1_uc010wys.1_Missense_Mutation_p.E213K|CLUL1_uc002kkq.2_Missense_Mutation_p.E161K	NM_014410	NP_055225	Q15846	CLUL1_HUMAN	clusterin-like 1 (retinal) precursor	161					cell death	extracellular region				ovary(2)	2						TGAAGATAATGAAAAAGATCT	0.373000													9	63					0	0	0.000442599	0	0
NDC80	10403	broad.mit.edu	37	18	2610828	2610828	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr18:2610828G>A	uc002kli.2	+	16	1941	c.1759G>A	c.(1759-1761)GAG>AAG	p.E587K		NM_006101	NP_006092	O14777	NDC80_HUMAN	kinetochore associated 2	587	Potential.|Interaction with the C-terminus of CDCA1 and the SPBC24-SPBC25 subcomplex.|Interaction with NEK2 and ZWINT.				attachment of spindle microtubules to kinetochore|cell division|establishment of mitotic spindle orientation|mitotic prometaphase|mitotic sister chromatid segregation|mitotic spindle organization|phosphatidylinositol-mediated signaling	condensed nuclear chromosome outer kinetochore|cytosol|Ndc80 complex	protein binding			ovary(1)	1						ACGTCTGTTAGAGATGGTTGC	0.373000													15	80					0	0	0.00244969	0	0
FAM38B	63895	broad.mit.edu	37	18	10671551	10671551	+	Silent	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr18:10671551G>A	uc002kor.3	-	14	2243	c.2103C>T	c.(2101-2103)ATC>ATT	p.I701I	FAM38B_uc002koq.2_Silent_p.I536I	NM_022068	NP_071351	Q9H5I5	PIEZ2_HUMAN	family with sequence similarity 38, member B	2744						integral to membrane	ion channel activity			ovary(1)	1						TAGTCCATTTGATCATTGTCT	0.328000													6	30					0	0	0.000157383	0	0
C18orf10	25941	broad.mit.edu	37	18	34387862	34387863	+	Missense_Mutation	DNP	GT	TC	TC			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr18:34387862_34387863GT>TC	uc002kzw.1	-	3	628_629	c.200_201AC>GA	c.(199-201)AAC>AGA	p.N67R	C18orf10_uc002kzv.1_Missense_Mutation_p.N67R|C18orf10_uc010xci.1_Missense_Mutation_p.N67R|C18orf10_uc002kzx.1_Missense_Mutation_p.N67R|C18orf10_uc002kzy.3_Missense_Mutation_p.N67R	NM_015476	NP_056291	Q68CL5	TPGS2_HUMAN	tubulin polyglutamylase complex subunit 2	67						cytoplasm|microtubule				skin(1)	1						TCAGGTAAAAGTTCTTCACATC	0.312000													9	70					0	0	6.4e-05	0	0
DCC	1630	broad.mit.edu	37	18	51025755	51025755	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr18:51025755G>A	uc002lfe.1	+	27	4573	c.3986G>A	c.(3985-3987)AGA>AAA	p.R1329K	DCC_uc010dpf.1_Missense_Mutation_p.R962K	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	1329	Cytoplasmic (Potential).				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		GCACCAAGCAGAACCATCCCC	0.542000													8	56					0	0	0.000157383	0	0
PLIN4	729359	broad.mit.edu	37	19	4512463	4512463	+	Silent	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr19:4512463G>A	uc002mar.1	-	3	1467	c.1467C>T	c.(1465-1467)TCC>TCT	p.S489S	PLIN4_uc010dub.1_5'Flank	NM_001080400	NP_001073869	Q96Q06	PLIN4_HUMAN	plasma membrane associated protein, S3-12	489	27 X 33 AA approximate tandem repeat.|12.					lipid particle|plasma membrane					0						TGAGCCCAGTGGACACAGCAT	0.617000													6	82					0	0	0.000157383	0	0
KDM4B	23030	broad.mit.edu	37	19	5133943	5133943	+	Silent	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr19:5133943G>A	uc002mbq.3	+	14	2182	c.1956G>A	c.(1954-1956)TTG>TTA	p.L652L	KDM4B_uc010xim.1_Silent_p.L686L|KDM4B_uc002mbr.3_Silent_p.L410L	NM_015015	NP_055830	O94953	KDM4B_HUMAN	jumonji domain containing 2B	652					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|zinc ion binding			lung(1)	1						CGGACGCCTTGAGGCCGCTGC	0.617000													6	48					0	0	0.00116845	0	0
HNRNPM	4670	broad.mit.edu	37	19	8531250	8531250	+	Silent	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr19:8531250C>T	uc010dwe.2	+	7	842	c.762C>T	c.(760-762)TCC>TCT	p.S254S	HNRNPM_uc010dwc.1_Silent_p.S254S|HNRNPM_uc010xke.1_Silent_p.S215S|HNRNPM_uc010dwd.2_Silent_p.S215S|HNRNPM_uc002mka.2_Silent_p.S134S	NM_005968	NP_005959	P52272	HNRPM_HUMAN	heterogeneous nuclear ribonucleoprotein M	254	RRM 2.				alternative nuclear mRNA splicing, via spliceosome	catalytic step 2 spliceosome|integral to plasma membrane|nuclear matrix|nucleolus|paraspeckles	nucleotide binding|protein domain specific binding|RNA binding				0						TTGAACAGTCCATTGAAGCTG	0.398000													12	79					0	0	0.00136819	0	0
MUC16	94025	broad.mit.edu	37	19	9008345	9008345	+	Silent	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr19:9008345C>T	uc002mkp.2	-	41	39411	c.39207G>A	c.(39205-39207)AGG>AGA	p.R13069R	MUC16_uc010dwi.2_5'Flank|MUC16_uc010dwj.2_5'Flank|MUC16_uc010xki.1_Intron	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	13071	Extracellular (Potential).|SEA 7.				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CCTTCTCAGACCTGGGGAAGG	0.542000													9	65					0	0	0.000673444	0	0
MUC16	94025	broad.mit.edu	37	19	9068151	9068151	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr19:9068151G>A	uc002mkp.2	-	3	19499	c.19295C>T	c.(19294-19296)TCT>TTT	p.S6432F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	6434	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGCAAAAGTAGAAAGCATGGT	0.507000													13	93					0	0	0.00136819	0	0
MUC16	94025	broad.mit.edu	37	19	9072414	9072414	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr19:9072414G>A	uc002mkp.2	-	3	15236	c.15032C>T	c.(15031-15033)TCA>TTA	p.S5011L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5013	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						ATCCAATTGTGAAAATCCATG	0.483000													5	38					0	0	0.000602214	0	0
ZNF136	7695	broad.mit.edu	37	19	12297721	12297721	+	Silent	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr19:12297721C>T	uc002mti.2	+	4	628	c.528C>T	c.(526-528)ACC>ACT	p.T176T	ZNF136_uc010xmh.1_Silent_p.T110T	NM_003437	NP_003428	P52737	ZN136_HUMAN	zinc finger protein 136	176	C2H2-type 2.				negative regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	DNA binding|protein binding|transcription corepressor activity|zinc ion binding			ovary(1)|pancreas(1)	2						GTGGAAAAACCTTCTTTTCTC	0.383000													4	26					0	0	0.00024832	0	0
CACNA1A	773	broad.mit.edu	37	19	13445289	13445289	+	Silent	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr19:13445289C>T	uc010dze.2	-	8	1337	c.1101G>A	c.(1099-1101)AGG>AGA	p.R367R	CACNA1A_uc002mwy.3_Silent_p.R367R	NM_001127221	NP_001120693	O00555	CAC1A_HUMAN	calcium channel, alpha 1A subunit isoform 3	367	Cytoplasmic (Potential).				cell death|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|membrane depolarization|regulation of insulin secretion	cytoplasm|nucleus	syntaxin binding			large_intestine(2)	2			OV - Ovarian serous cystadenocarcinoma(19;5.07e-21)		Bepridil(DB01244)|Cinnarizine(DB00568)|Loperamide(DB00836)|Nisoldipine(DB00401)|Pregabalin(DB00230)	CCACCCGTTCCCTTTCTTTGG	0.423000													10	46					0	0	0.000673444	0	0
OR10H2	26538	broad.mit.edu	37	19	15839066	15839066	+	Silent	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr19:15839066C>T	uc002nbm.2	+	1	233	c.213C>T	c.(211-213)ATC>ATT	p.I71I		NM_013939	NP_039227	O60403	O10H2_HUMAN	olfactory receptor, family 10, subfamily H,	71	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3	all_hematologic(1;0.0517)|Acute lymphoblastic leukemia(2;0.074)					TCTCCGAGATCCTCTACACCG	0.632000													6	52					0	0	0.00116845	0	0
OR10H5	284433	broad.mit.edu	37	19	15904951	15904951	+	Silent	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr19:15904951C>T	uc010xos.1	+	1	93	c.93C>T	c.(91-93)TTC>TTT	p.F31F		NM_001004466	NP_001004466	Q8NGA6	O10H5_HUMAN	olfactory receptor, family 10, subfamily H,	31	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						TCCTGCTGTTCCTGCTGATGT	0.587000													11	120					0	0	0.000978159	0	0
CHERP	10523	broad.mit.edu	37	19	16638916	16638916	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr19:16638916G>A	uc002nei.1	-	9	1354	c.1280C>T	c.(1279-1281)CCC>CTC	p.P427L	MED26_uc002nee.2_Intron|CHERP_uc010xpg.1_5'Flank	NM_006387	NP_006378	Q8IWX8	CHERP_HUMAN	calcium homeostasis endoplasmic reticulum	427	Pro-rich.				cellular calcium ion homeostasis|negative regulation of cell proliferation|nervous system development|RNA processing	endoplasmic reticulum|perinuclear region of cytoplasm	RNA binding			ovary(2)	2						AGGAGCCACGGGGTGAGGCTG	0.547000													10	40					0	0	0.000978159	0	0
NWD1	284434	broad.mit.edu	37	19	16910778	16910778	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr19:16910778G>A	uc002neu.3	+	17	3963	c.3541G>A	c.(3541-3543)GGG>AGG	p.G1181R	NWD1_uc002net.3_Missense_Mutation_p.G1046R|NWD1_uc002nev.3_Missense_Mutation_p.G975R			Q149M9	NWD1_HUMAN	RecName: Full=NACHT and WD repeat domain-containing protein 1;	1181	WD 9.						ATP binding	p.G1046R(1)		skin(3)|ovary(2)|pancreas(2)	7						GGCCCGCGGCGGGGCTTTGGT	0.622000													4	45					0	0	0.00116845	0	0
C19orf12	83636	broad.mit.edu	37	19	30193665	30193665	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr19:30193665T>C	uc002nsk.2	-	3	811	c.380A>G	c.(379-381)AAC>AGC	p.N127S	C19orf12_uc002nsj.2_Missense_Mutation_p.N138S|C19orf12_uc002nsl.2_3'UTR|C19orf12_uc002nsm.2_RNA	NM_031448	NP_113636	Q9NSK7	CS012_HUMAN	hypothetical protein LOC83636 isoform 2	127						integral to membrane					0	Ovarian(5;0.000567)|Breast(6;0.0203)|Esophageal squamous(110;0.239)		UCEC - Uterine corpus endometrioid carcinoma (4;2.65e-06)|STAD - Stomach adenocarcinoma(5;1.7e-06)|Lung(7;0.0435)|LUAD - Lung adenocarcinoma(5;0.0989)|BRCA - Breast invasive adenocarcinoma(6;0.183)			GGTGACGTAGTTCACCAGCAT	0.632000													6	24					0	0	0.00198382	0	0
PDCD2L	84306	broad.mit.edu	37	19	34900267	34900268	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr19:34900267_34900268CC>TT	uc002nvj.2	+	4	571_572	c.538_539CC>TT	c.(538-540)CCT>TTT	p.P180F		NM_032346	NP_115722	Q9BRP1	PDD2L_HUMAN	programmed cell death 2-like	180						cytoplasm				ovary(1)	1	Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.211)			TCCTGTGCCTCCTGGGCTGCCG	0.579000													9	71					0	0	6.4e-05	0	0
SIPA1L3	23094	broad.mit.edu	37	19	38621238	38621238	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr19:38621238T>C	uc002ohk.2	+	10	3478	c.2969T>C	c.(2968-2970)GTT>GCT	p.V990A		NM_015073	NP_055888	O60292	SI1L3_HUMAN	signal-induced proliferation-associated 1 like	990	PDZ.				regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(1)|central_nervous_system(1)	2			Lung(45;0.000246)|LUSC - Lung squamous cell carcinoma(53;0.000292)			GTGGCCGAGGTTGAGGACTAT	0.657000													6	64					0	0	0.00116845	0	0
RYR1	6261	broad.mit.edu	37	19	38951099	38951099	+	Silent	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr19:38951099C>T	uc002oit.2	+	20	2575	c.2445C>T	c.(2443-2445)CTC>CTT	p.L815L	RYR1_uc002oiu.2_Silent_p.L815L	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	815	Cytoplasmic.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	AGGCTGTGCTCCCTCGAGAGC	0.637000													14	77					0	0	0.00244969	0	0
TIMM50	92609	broad.mit.edu	37	19	39976891	39976891	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr19:39976891C>T	uc002olu.1	+	7	999	c.866C>T	c.(865-867)CCT>CTT	p.P289L	TIMM50_uc002olt.1_RNA|TIMM50_uc002olv.1_5'UTR	NM_001001563	NP_001001563	Q3ZCQ8	TIM50_HUMAN	translocase of inner mitochondrial membrane 50	186	Mitochondrial intermembrane (Potential).|FCP1 homology.				mitochondrial membrane organization|protein transport|release of cytochrome c from mitochondria|transmembrane transport	integral to membrane|mitochondrial inner membrane presequence translocase complex|nuclear speck	interleukin-2 receptor binding|protein serine/threonine phosphatase activity|protein tyrosine phosphatase activity|ribonucleoprotein binding|RNA binding			ovary(1)	1	all_cancers(60;4.04e-06)|all_lung(34;1.77e-07)|Lung NSC(34;2.09e-07)|all_epithelial(25;1.13e-05)|Ovarian(47;0.159)		Epithelial(26;5.89e-26)|all cancers(26;1.96e-23)|LUSC - Lung squamous cell carcinoma(53;0.000657)			CAGCTTGCCCCTTTATATGAA	0.547000													27	232					0	0	0.00127121	0	0
FCGBP	8857	broad.mit.edu	37	19	40405988	40405988	+	Nonsense_Mutation	SNP	G	A	A	rs144236712		TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr19:40405988G>A	uc002omp.3	-	10	4866	c.4858C>T	c.(4858-4860)CAG>TAG	p.Q1620*		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	1620	Cys-rich.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			CTGTGTTCCTGGCACACCATG	0.637000													6	23					0	0	0.00116845	0	0
CEACAM7	1087	broad.mit.edu	37	19	42187773	42187773	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr19:42187773C>T	uc002ori.1	-	3	651	c.649G>A	c.(649-651)GAA>AAA	p.E217K	CEACAM7_uc010ehx.2_Missense_Mutation_p.E217K|CEACAM7_uc010ehy.1_Intron	NM_006890	NP_008821	Q14002	CEAM7_HUMAN	carcinoembryonic antigen-related cell adhesion	217	Ig-like C2-type.					anchored to membrane|integral to membrane|plasma membrane				ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(3;0.0027)|all cancers(3;0.00979)|Epithelial(262;0.0366)		TTCTGTATTTCACATTCATAG	0.557000													14	110					0	0	0.000308642	0	0
PSG7	5676	broad.mit.edu	37	19	43430058	43430058	+	Silent	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr19:43430058C>T	uc002ovl.3	-	6	1212	c.1110G>A	c.(1108-1110)GGG>GGA	p.G370G	PSG3_uc002ouf.2_Intron|PSG11_uc002ouw.2_Silent_p.G283G|PSG7_uc002ous.1_RNA|PSG7_uc002out.1_Silent_p.G96G|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Intron|PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG11_uc002ovk.1_Silent_p.G283G|PSG7_uc010xwl.1_Silent_p.G248G	NM_002783	NP_002774	Q13046	PSG7_HUMAN	pregnancy specific beta-1-glycoprotein 7	370	Ig-like C2-type 3.				female pregnancy	extracellular region					0		Prostate(69;0.00682)				GCTGAAACTTCCCATTAATTG	0.458000													19	149					0	0	0.00121646	0	0
ZNF226	7769	broad.mit.edu	37	19	44680983	44680983	+	Missense_Mutation	SNP	T	G	G			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr19:44680983T>G	uc002oyp.2	+	6	1712	c.1568T>G	c.(1567-1569)GTG>GGG	p.V523G	ZNF226_uc002oyq.2_Missense_Mutation_p.V406G|ZNF226_uc002oyr.2_Missense_Mutation_p.V406G|ZNF226_uc010ejg.2_3'UTR|ZNF226_uc002oys.2_Missense_Mutation_p.V523G|ZNF226_uc002oyt.2_Missense_Mutation_p.V523G	NM_001032373	NP_001027545	Q9NYT6	ZN226_HUMAN	zinc finger protein 226 isoform a	523	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0352)|all_neural(266;0.202)				GTTCATCTAGTGGTCCACACA	0.453000													10	36					0	0	0.000442599	0	0
PRKD2	25865	broad.mit.edu	37	19	47197331	47197331	+	Silent	SNP	C	T	T	rs61739905	byFrequency	TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr19:47197331C>T	uc002pfh.2	-	11	1719	c.1377G>A	c.(1375-1377)CCG>CCA	p.P459P	PRKD2_uc010ekt.2_5'Flank|PRKD2_uc002pfe.2_5'UTR|PRKD2_uc002pff.2_5'UTR|PRKD2_uc002pfg.2_Silent_p.P302P|PRKD2_uc002pfi.2_Silent_p.P459P|PRKD2_uc002pfj.2_Silent_p.P459P|PRKD2_uc010xye.1_Silent_p.P459P|PRKD2_uc002pfk.2_Silent_p.P302P	NM_001079881	NP_001073350	Q9BZL6	KPCD2_HUMAN	protein kinase D2 isoform A	459	PH.				cell death|intracellular signal transduction|positive regulation of transcription from RNA polymerase II promoter|protein autophosphorylation|T cell receptor signaling pathway	cytoplasm|membrane|nucleus	ATP binding|metal ion binding|protein kinase C activity			ovary(2)|central_nervous_system(2)|stomach(1)|large_intestine(1)|lung(1)	7		Ovarian(192;0.0129)|all_neural(266;0.0459)|Breast(70;0.212)		OV - Ovarian serous cystadenocarcinoma(262;0.000189)|all cancers(93;0.000545)|Epithelial(262;0.0219)|GBM - Glioblastoma multiforme(486;0.0353)		TGGTGCCCGGCGGCACAAGGC	0.622000													6	39					0	0	0.000157383	0	0
GRIN2D	2906	broad.mit.edu	37	19	48918128	48918128	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr19:48918128C>T	uc002pjc.3	+	6	1508	c.1420C>T	c.(1420-1422)CCG>TCG	p.P474S		NM_000836	NP_000827	O15399	NMDE4_HUMAN	N-methyl-D-aspartate receptor subunit 2D	474	Extracellular (Potential).					cell junction|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|protein binding			ovary(3)|breast(3)	6		all_epithelial(76;1.11e-06)|all_lung(116;5.79e-06)|Lung NSC(112;1.18e-05)|all_neural(266;0.0189)|Ovarian(192;0.0261)|Breast(70;0.203)		all cancers(93;0.00014)|OV - Ovarian serous cystadenocarcinoma(262;0.000233)|Epithelial(262;0.0112)|GBM - Glioblastoma multiforme(486;0.0161)	L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Orphenadrine(DB01173)	CAGCCCTCCACCGGATGCCCC	0.607000													5	55					0	0	0.00198382	0	0
SIGLEC14	100049587	broad.mit.edu	37	19	52147175	52147175	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr19:52147175C>T	uc002pxf.3	-	5	989	c.869G>A	c.(868-870)GGA>GAA	p.G290E		NM_001098612	NP_001092082	Q08ET2	SIG14_HUMAN	sialic acid binding Ig-like lectin 14 precursor	290	Extracellular (Potential).|Ig-like C2-type 2.				cell adhesion	integral to membrane|plasma membrane	protein binding|sugar binding			ovary(1)	1		all_neural(266;0.0299)		GBM - Glioblastoma multiforme(134;0.000965)|OV - Ovarian serous cystadenocarcinoma(262;0.0195)		GAGGGCTTTTCCCTCCCGGAA	0.597000													5	18					0	0	0.000157383	0	0
ZNF534	147658	broad.mit.edu	37	19	52941472	52941472	+	Silent	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr19:52941472G>A	uc002pzk.2	+	4	859	c.798G>A	c.(796-798)CAG>CAA	p.Q266Q	ZNF534_uc002pzj.1_Intron|ZNF534_uc010epo.1_Intron|ZNF534_uc002pzl.2_Silent_p.Q253Q	NM_001143939	NP_001137411	Q76KX8	ZN534_HUMAN	zinc finger protein 534 isoform 2	266	C2H2-type 3; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TCTTCAATCAGAATTCACACC	0.383000													5	39					0	0	0.000602214	0	0
ZNF816A	125893	broad.mit.edu	37	19	53456034	53456034	+	Silent	SNP	A	G	G			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr19:53456034A>G	uc002qal.1	-	4	461	c.160T>C	c.(160-162)TTG>CTG	p.L54L	ZNF321_uc010eqj.2_Silent_p.L38L|ZNF321_uc002qak.1_Silent_p.L38L|ZNF816A_uc002qam.1_Silent_p.L38L	NM_001031665	NP_001026835	Q0VGE8	ZN816_HUMAN	zinc finger protein 816A	54	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.0313)		TAGTTCTCCAACATCACAGCC	0.468000													20	104					0	0	0.00188189	0	0
NLRP4	147945	broad.mit.edu	37	19	56382302	56382302	+	Missense_Mutation	SNP	G	A	A	rs140263319	by1000genomes	TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr19:56382302G>A	uc002qmd.3	+	7	2886	c.2464G>A	c.(2464-2466)GAA>AAA	p.E822K	NLRP4_uc002qmf.2_Missense_Mutation_p.E747K|NLRP4_uc010etf.2_Missense_Mutation_p.E597K	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	822	LRR 5.						ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		CCTGAAGGACGAAGGACTGAA	0.512000													7	70					0	0	0.000442599	0	0
NLRP8	126205	broad.mit.edu	37	19	56467445	56467445	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr19:56467445C>A	uc002qmh.2	+	3	2092	c.2021C>A	c.(2020-2022)TCC>TAC	p.S674Y	NLRP8_uc010etg.2_Missense_Mutation_p.S674Y	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8	674						cytoplasm	ATP binding			ovary(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|kidney(1)	13		Colorectal(82;0.000147)|Ovarian(87;0.17)		GBM - Glioblastoma multiforme(193;0.0695)		AAGCTCAGCTCCAGCTCCCAT	0.552000													14	45					2.48551e-13	1.08598e-12	0.000566183	1	0
CAD	790	broad.mit.edu	37	2	27446824	27446824	+	Missense_Mutation	SNP	T	G	G			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr2:27446824T>G	uc002rji.2	+	8	1197	c.1035T>G	c.(1033-1035)GAT>GAG	p.D345E	CAD_uc010eyw.2_Missense_Mutation_p.D345E	NM_004341	NP_004332	P27708	PYR1_HUMAN	carbamoylphosphate synthetase 2/aspartate	345	Glutamine amidotransferase type-1.|GATase (Glutamine amidotransferase).				'de novo' pyrimidine base biosynthetic process|drug metabolic process|glutamine metabolic process|peptidyl-threonine phosphorylation|protein autophosphorylation|pyrimidine nucleoside biosynthetic process|pyrimidine nucleotide biosynthetic process	cytosol|neuronal cell body|nuclear matrix|terminal button	aspartate binding|aspartate carbamoyltransferase activity|ATP binding|carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity|dihydroorotase activity|enzyme binding|identical protein binding|metal ion binding|protein kinase activity			ovary(4)|large_intestine(2)|kidney(2)|lung(1)|pancreas(1)	10	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				L-Aspartic Acid(DB00128)|L-Glutamine(DB00130)	GCCCTTCAGATATGGAACTGC	0.507000													35	180					0	0	0.00222228	0	0
SLC30A3	7781	broad.mit.edu	37	2	27481679	27481679	+	Silent	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr2:27481679C>T	uc002rjk.2	-	2	405	c.219G>A	c.(217-219)CGG>CGA	p.R73R	SLC30A3_uc002rjj.2_5'Flank|SLC30A3_uc010ylh.1_Silent_p.R68R	NM_003459	NP_003450	Q99726	ZNT3_HUMAN	solute carrier family 30 (zinc transporter),	73	Cytoplasmic (Potential).				regulation of sequestering of zinc ion	cell junction|integral to plasma membrane|late endosome|membrane fraction|synaptic vesicle membrane	zinc transporting ATPase activity				0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					ATAGCTGCCTCCGTGCATGCA	0.607000													10	50					0	0	0.000673444	0	0
XDH	7498	broad.mit.edu	37	2	31565072	31565072	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr2:31565072C>T	uc002rnv.1	-	32	3575	c.3496G>A	c.(3496-3498)GAC>AAC	p.D1166N		NM_000379	NP_000370	P47989	XDH_HUMAN	xanthine dehydrogenase	1166					purine nucleotide catabolic process|xanthine catabolic process	cytosol|extracellular region|peroxisome	2 iron, 2 sulfur cluster binding|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|molybdopterin cofactor binding|protein homodimerization activity|xanthine dehydrogenase activity|xanthine oxidase activity			skin(4)|breast(2)|ovary(1)|central_nervous_system(1)	8	Acute lymphoblastic leukemia(172;0.155)				Allopurinol(DB00437)|Carvedilol(DB01136)|Daunorubicin(DB00694)|Deferoxamine(DB00746)|Desflurane(DB01189)|Menadione(DB00170)|Mercaptopurine(DB01033)|Methotrexate(DB00563)|NADH(DB00157)|Nitrofurazone(DB00336)|Papaverine(DB01113)|Procarbazine(DB01168)|Pyrazinamide(DB00339)|Rasburicase(DB00049)|Spermine(DB00127)|Trifluoperazine(DB00831)|Vitamin E(DB00163)	GTTAGGCAGTCGATTTCTACT	0.443000													12	63					0	0	0.00136819	0	0
SLC8A1	6546	broad.mit.edu	37	2	40397470	40397470	+	Silent	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr2:40397470C>T	uc002rrx.2	-	6	2013	c.1989G>A	c.(1987-1989)AAG>AAA	p.K663K	uc002rrw.2_Intron|SLC8A1_uc002rry.2_Silent_p.K658K|SLC8A1_uc002rrz.2_Silent_p.K650K|SLC8A1_uc002rsa.2_Intron|SLC8A1_uc002rsd.3_Intron|SLC8A1_uc002rsb.1_Silent_p.K655K	NM_021097	NP_066920	P32418	NAC1_HUMAN	solute carrier family 8 (sodium/calcium	663	Cytoplasmic (Potential).				cell communication|muscle contraction|platelet activation	integral to plasma membrane	calcium:sodium antiporter activity|calmodulin binding|heat shock protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4					Alpha-Linolenic Acid(DB00132)|Icosapent(DB00159)	TAGCATGAACCTTCCTGAAGA	0.418000													4	30					0	0	0.000602214	0	0
FSHR	2492	broad.mit.edu	37	2	49381435	49381435	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr2:49381435G>A	uc002rww.2	-	1	196	c.122C>T	c.(121-123)CCT>CTT	p.P41L	FSHR_uc002rwx.2_Missense_Mutation_p.P41L|FSHR_uc010fbn.2_Missense_Mutation_p.P41L|FSHR_uc010fbo.1_RNA	NM_000145	NP_000136	P23945	FSHR_HUMAN	follicle stimulating hormone receptor isoform 1	41	LRRNT.|Extracellular (Potential).				female gamete generation|male gonad development|spermatogenesis	integral to membrane|plasma membrane	follicle-stimulating hormone receptor activity|protein binding			ovary(4)|lung(2)|central_nervous_system(1)|skin(1)	8		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.181)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)		Choriogonadotropin alfa(DB00097)|Follitropin beta(DB00066)|Menotropins(DB00032)|Urofollitropin(DB00094)	GAGGTCAGAAGGAATCTCTGT	0.478000									Gonadal_Dysgenesis_46_XX				5	17					0	0	0.00198382	0	0
C2orf3	6936	broad.mit.edu	37	2	75929383	75929383	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr2:75929383C>G	uc002sno.2	-	3	691	c.561G>C	c.(559-561)AAG>AAC	p.K187N	C2orf3_uc010ffs.2_5'Flank|C2orf3_uc002snn.2_Missense_Mutation_p.K18N|C2orf3_uc010fft.2_5'UTR|C2orf3_uc002snp.3_Missense_Mutation_p.K187N	NM_003203	NP_003194	P16383	GCF_HUMAN	hypothetical protein LOC6936	187					negative regulation of transcription, DNA-dependent	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)	2						ATGGTATTCTCTTTTCATGGT	0.373000													14	96					0	0	0.000422831	0	0
MAT2A	4144	broad.mit.edu	37	2	85770071	85770071	+	Silent	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr2:85770071C>T	uc002spr.2	+	8	1122	c.999C>T	c.(997-999)TTC>TTT	p.F333F	MAT2A_uc010ysr.1_Silent_p.F333F|MAT2A_uc010fgk.2_Silent_p.F307F|MAT2A_uc010fgl.2_Silent_p.F270F	NM_005911	NP_005902	P31153	METK2_HUMAN	methionine adenosyltransferase II, alpha	333					methylation|xenobiotic metabolic process	cytosol	ATP binding|metal ion binding|methionine adenosyltransferase activity				0					L-Methionine(DB00134)|S-Adenosylmethionine(DB00118)	TCTCCATTTTCCATTATGGTA	0.388000													19	99					0	0	0.000958276	0	0
Unknown	0	broad.mit.edu	37	2	89417024	89417024	+	RNA	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr2:89417024C>T	uc010ytr.1	-	42		c.4578G>A			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		CAGCCTAAATCATTTCTAATG	0.532000													18	99					0	0	0.000958276	0	0
CNNM4	26504	broad.mit.edu	37	2	97464925	97464925	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr2:97464925C>T	uc002swx.2	+	4	1911	c.1813C>T	c.(1813-1815)CGA>TGA	p.R605*	CNNM4_uc010yuy.1_Nonsense_Mutation_p.R92*	NM_020184	NP_064569	Q6P4Q7	CNNM4_HUMAN	cyclin M4	605					biomineral tissue development|ion transport|response to stimulus|visual perception	integral to membrane|plasma membrane				breast(2)|ovary(1)	3						CCTGTACACCCGAAATAAGCC	0.577000													6	63					0	0	0.000673444	0	0
INHBB	3625	broad.mit.edu	37	2	121107048	121107048	+	Silent	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr2:121107048C>T	uc002tmn.2	+	2	868	c.822C>T	c.(820-822)CCC>CCT	p.P274P		NM_002193	NP_002184	P09529	INHBB_HUMAN	inhibin beta B subunit preproprotein	274					activin receptor signaling pathway|cellular response to insulin stimulus|cellular response to starvation|defense response|fat cell differentiation|growth|negative regulation of follicle-stimulating hormone secretion|negative regulation of hepatocyte growth factor biosynthetic process|negative regulation of insulin secretion|ovarian follicle development|positive regulation of follicle-stimulating hormone secretion|positive regulation of ovulation	extracellular region|perinuclear region of cytoplasm	cytokine activity|growth factor activity|hormone activity|host cell surface receptor binding|protein homodimerization activity			pancreas(2)|skin(1)	3		Prostate(154;0.122)				CGCACCGGCCCTTTGTGGTGG	0.667000													13	75					0	0	0.00136819	0	0
LCT	3938	broad.mit.edu	37	2	136570134	136570134	+	Silent	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr2:136570134G>A	uc002tuu.1	-	7	2111	c.2100C>T	c.(2098-2100)ATC>ATT	p.I700I		NM_002299	NP_002290	P09848	LPH_HUMAN	lactase-phlorizin hydrolase preproprotein	700	Extracellular (Potential).|4 X approximate repeats.|2.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|integral to plasma membrane|membrane fraction	cation binding|glycosylceramidase activity|lactase activity			ovary(7)|central_nervous_system(2)|skin(2)|pancreas(1)|lung(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.169)		CATAGCTAGGGATGCAGGTGT	0.552000													8	38					0	0	0.00136819	0	0
THSD7B	80731	broad.mit.edu	37	2	137990496	137990496	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr2:137990496C>T	uc002tva.1	+	8	1850	c.1850C>T	c.(1849-1851)GCT>GTT	p.A617V	THSD7B_uc010zbj.1_Intron|THSD7B_uc002tvb.2_Missense_Mutation_p.A507V	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		CCTAGTCAGGCTCTCCAAGAG	0.458000													9	29					0	0	0.000442599	0	0
THSD7B	80731	broad.mit.edu	37	2	137990559	137990559	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr2:137990559C>T	uc002tva.1	+	8	1913	c.1913C>T	c.(1912-1914)CCT>CTT	p.P638L	THSD7B_uc010zbj.1_Intron|THSD7B_uc002tvb.2_Missense_Mutation_p.P528L	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		GAGACATCGCCTTGGGGCCCT	0.517000													6	36					0	0	0.00116845	0	0
SPOPL	339745	broad.mit.edu	37	2	139326535	139326535	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr2:139326535G>T	uc002tvh.2	+	11	1464	c.1064G>T	c.(1063-1065)GGG>GTG	p.G355V		NM_001001664	NP_001001664	Q6IQ16	SPOPL_HUMAN	speckle-type POZ protein-like	355						nucleus				skin(2)|breast(1)	3				BRCA - Breast invasive adenocarcinoma(221;0.0296)		GAAACATCAGGGTGGAAGTCC	0.398000													30	225					9.78306e-22	4.30933e-21	0.00178596	1	0
GALNT13	114805	broad.mit.edu	37	2	155295135	155295135	+	Missense_Mutation	SNP	G	A	A	rs148805770		TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr2:155295135G>A	uc002tyr.3	+	12	1994	c.1427G>A	c.(1426-1428)CGA>CAA	p.R476Q	GALNT13_uc002tyt.3_Missense_Mutation_p.R476Q|GALNT13_uc010fod.2_Intron|uc002tyu.1_Intron	NM_052917	NP_443149	Q8IUC8	GLT13_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	476	Ricin B-type lectin.|Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)|pancreas(2)|central_nervous_system(1)|skin(1)	6						AAAGAAATCCGAACCGATGAC	0.338000													12	63					0	0	0.00136819	0	0
SCN9A	6335	broad.mit.edu	37	2	167133823	167133823	+	Silent	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr2:167133823G>A	uc010fpl.2	-	16	2852	c.2511C>T	c.(2509-2511)TCC>TCT	p.S837S	uc002udp.2_Intron	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	848	II.|Helical; Voltage-sensor; Name=S4 of repeat II; (Potential).					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	ATGTTGGCCAGGATTTTGCCA	0.368000													7	38					0	0	0.000157383	0	0
XIRP2	129446	broad.mit.edu	37	2	168105894	168105894	+	Silent	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr2:168105894G>A	uc002udx.2	+	8	8010	c.7992G>A	c.(7990-7992)AGG>AGA	p.R2664R	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Silent_p.R2489R|XIRP2_uc010fpq.2_Silent_p.R2442R|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_Silent_p.R10R	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	2489					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						AAAGCTCAAGGGACATTATGC	0.408000													6	32					0	0	0.00116845	0	0
MIR1246	100302142	broad.mit.edu	37	2	177465766	177465766	+	RNA	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr2:177465766C>T	hsa-mir-1246|MI0006381	-			c.15C>T																				0						ctccaaAAATCCATTCAAGGA	0.244000													24	115					0	0	0.000586117	0	0
TTN	7273	broad.mit.edu	37	2	179449972	179449972	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr2:179449972C>T	uc010zfg.1	-	258	57019	c.56795G>A	c.(56794-56796)TGG>TAG	p.W18932*	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Nonsense_Mutation_p.W12627*|TTN_uc010zfi.1_Nonsense_Mutation_p.W12560*|TTN_uc010zfj.1_Nonsense_Mutation_p.W12435*	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	19859							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCCTTTTTTCCATTTACAGGT	0.428000													19	133					0	0	0.00074312	0	0
TTN	7273	broad.mit.edu	37	2	179472700	179472700	+	Missense_Mutation	SNP	A	C	C			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr2:179472700A>C	uc010zfg.1	-	225	45334	c.45110T>G	c.(45109-45111)TTT>TGT	p.F15037C	uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.F8732C|TTN_uc010zfi.1_Missense_Mutation_p.F8665C|TTN_uc010zfj.1_Missense_Mutation_p.F8540C	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	15964							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTTATCAACAAAATAGCCAAC	0.478000													3	43					0	0	0.00024832	0	0
TTN	7273	broad.mit.edu	37	2	179613945	179613945	+	Missense_Mutation	SNP	T	G	G			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr2:179613945T>G	uc002unb.2	-	46	13406	c.13182A>C	c.(13180-13182)GAA>GAC	p.E4394D	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TATTTCTTATTTCTTTCTTAA	0.333000													4	21					0	0	0.00024832	0	0
CCDC141	285025	broad.mit.edu	37	2	179702336	179702336	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr2:179702336C>T	uc002unf.1	-	13	1942	c.1885G>A	c.(1885-1887)GAA>AAA	p.E629K	CCDC141_uc002une.1_Missense_Mutation_p.E79K	NM_173648	NP_775919	Q6ZP82	CC141_HUMAN	coiled-coil domain containing 141	629							protein binding			ovary(7)|pancreas(2)|skin(1)	10			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.0531)|all cancers(119;0.147)			TCATATTCTTCCCCTGAGAGC	0.567000													11	45					0	0	0.000673444	0	0
CWC22	57703	broad.mit.edu	37	2	180810261	180810261	+	Silent	SNP	A	G	G			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr2:180810261A>G	uc010frh.1	-	20	2622	c.2322T>C	c.(2320-2322)GGT>GGC	p.G774G	CWC22_uc002uno.2_Silent_p.G296G|CWC22_uc002unp.2_Silent_p.G774G	NM_020943	NP_065994	Q9HCG8	CWC22_HUMAN	CWC22 spliceosome-associated protein homolog	774						catalytic step 2 spliceosome	protein binding|RNA binding				0						TCCAATTTGAACCACTTGAAT	0.383000													26	132					0	0	0.00106085	0	0
ASNSD1	54529	broad.mit.edu	37	2	190532015	190532015	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr2:190532015C>T	uc002uqt.2	+	4	1591	c.1157C>T	c.(1156-1158)TCT>TTT	p.S386F		NM_019048	NP_061921	Q9NWL6	ASND1_HUMAN	asparagine synthetase domain containing 1	386	Asparagine synthetase.				asparagine biosynthetic process|glutamine metabolic process		asparagine synthase (glutamine-hydrolyzing) activity			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.00318)|Epithelial(96;0.0449)|all cancers(119;0.118)			GAAGAATTCTCTAAAGATGTT	0.398000													6	25					0	0	0.00198382	0	0
DNAH7	56171	broad.mit.edu	37	2	196753050	196753050	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr2:196753050C>T	uc002utj.3	-	33	5439	c.5338G>A	c.(5338-5340)GAA>AAA	p.E1780K		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	1780	AAA 2 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						ATTATGAATTCCTTTTGAATA	0.383000													12	37					0	0	0.000978159	0	0
NRP2	8828	broad.mit.edu	37	2	206630209	206630209	+	Silent	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr2:206630209G>A	uc002vaw.2	+	14	3110	c.2319G>A	c.(2317-2319)GAG>GAA	p.E773E	NRP2_uc002vau.2_Silent_p.E773E|NRP2_uc002vav.2_Silent_p.E773E|NRP2_uc002vax.2_Silent_p.E773E|NRP2_uc002vay.2_Silent_p.E773E	NM_201266	NP_957718	O60462	NRP2_HUMAN	neuropilin 2 isoform 1 precursor	773	Extracellular (Potential).|MAM.				angiogenesis|axon guidance|cell adhesion	integral to membrane|membrane fraction|plasma membrane	heparin binding|metal ion binding|semaphorin receptor activity|vascular endothelial growth factor receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4						TTGTGTTCGAGGGAGTGATAG	0.468000													14	150					0	0	0.000308642	0	0
PTPRN	5798	broad.mit.edu	37	2	220167204	220167204	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr2:220167204G>A	uc002vkz.2	-	6	738	c.649C>T	c.(649-651)CGT>TGT	p.R217C	PTPRN_uc010zlc.1_Missense_Mutation_p.R127C|PTPRN_uc002vla.2_Missense_Mutation_p.R217C	NM_002846	NP_002837	Q16849	PTPRN_HUMAN	protein tyrosine phosphatase, receptor type, N	217	Extracellular (Potential).				response to reactive oxygen species	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(2)|lung(1)|skin(1)	4		Renal(207;0.0474)		Epithelial(149;4.22e-07)|all cancers(144;8.82e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)|STAD - Stomach adenocarcinoma(1183;0.0875)		GAGCCATCACGGGAGCCAAAC	0.617000													9	46					0	0	0.000442599	0	0
KIF1A	547	broad.mit.edu	37	2	241727552	241727552	+	Silent	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr2:241727552G>A	uc002vzy.2	-	4	425	c.279C>T	c.(277-279)ATC>ATT	p.I93I	KIF1A_uc010fzk.2_Silent_p.I93I|KIF1A_uc002vzz.1_Silent_p.I93I	NM_004321	NP_004312	Q12756	KIF1A_HUMAN	axonal transport of synaptic vesicles	93	Kinesin-motor.				anterograde axon cargo transport	cytoplasm|microtubule|nucleus	ATP binding|microtubule motor activity			lung(1)	1		all_epithelial(40;1.35e-15)|Breast(86;2.14e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0295)|all_neural(83;0.0459)|Lung NSC(271;0.0942)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;6.12e-30)|all cancers(36;3.46e-27)|OV - Ovarian serous cystadenocarcinoma(60;1.38e-14)|Kidney(56;5e-09)|KIRC - Kidney renal clear cell carcinoma(57;5e-08)|BRCA - Breast invasive adenocarcinoma(100;5.87e-06)|Lung(119;0.00209)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Colorectal(34;0.0282)|COAD - Colon adenocarcinoma(134;0.176)		CATAGGCGAAGATGCACACGT	0.607000													5	6					0	0	0.000602214	0	0
PASK	23178	broad.mit.edu	37	2	242072321	242072321	+	Silent	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr2:242072321G>A	uc002wao.1	-	9	1523	c.1431C>T	c.(1429-1431)CTC>CTT	p.L477L	PASK_uc010zol.1_Silent_p.L291L|PASK_uc010zom.1_Silent_p.L442L|PASK_uc010fzl.1_Silent_p.L477L|PASK_uc010zon.1_Silent_p.L258L|PASK_uc002wap.2_Silent_p.L20L|PASK_uc002waq.2_Silent_p.L477L	NM_015148	NP_055963	Q96RG2	PASK_HUMAN	PAS domain containing serine/threonine kinase	477					regulation of transcription, DNA-dependent	Golgi apparatus	ATP binding|identical protein binding|protein serine/threonine kinase activity|signal transducer activity			ovary(4)|lung(1)|skin(1)	6		all_cancers(19;4.46e-39)|all_epithelial(40;1.34e-17)|Breast(86;1.53e-05)|Renal(207;0.00179)|all_lung(227;0.00481)|Lung NSC(271;0.017)|Ovarian(221;0.0228)|Esophageal squamous(248;0.129)|all_hematologic(139;0.158)|Melanoma(123;0.16)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;1.34e-31)|all cancers(36;1e-28)|OV - Ovarian serous cystadenocarcinoma(60;3.53e-14)|Kidney(56;4.31e-09)|KIRC - Kidney renal clear cell carcinoma(57;4.35e-08)|BRCA - Breast invasive adenocarcinoma(100;5.64e-06)|Lung(119;0.000596)|LUSC - Lung squamous cell carcinoma(224;0.00481)|Colorectal(34;0.014)|COAD - Colon adenocarcinoma(134;0.0968)		GGCAGGAAAGGAGCTGGCCTC	0.552000													9	37					0	0	0.000442599	0	0
CHGB	1114	broad.mit.edu	37	20	5904399	5904399	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr20:5904399G>A	uc002wmg.2	+	4	1915	c.1609G>A	c.(1609-1611)GAA>AAA	p.E537K	CHGB_uc010zqz.1_Missense_Mutation_p.E220K	NM_001819	NP_001810	P05060	SCG1_HUMAN	chromogranin B precursor	537						extracellular region	hormone activity			breast(3)|skin(2)|ovary(1)	6						CAGCCATTTTGAAAGAAGAGA	0.428000													21	36					0	0	0.00188189	0	0
PAK7	57144	broad.mit.edu	37	20	9624791	9624791	+	Silent	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr20:9624791G>A	uc002wnl.2	-	4	731	c.186C>T	c.(184-186)ATC>ATT	p.I62I	PAK7_uc002wnk.2_Silent_p.I62I|PAK7_uc002wnj.2_Silent_p.I62I|PAK7_uc010gby.1_Silent_p.I62I	NM_020341	NP_065074	Q9P286	PAK7_HUMAN	p21-activated kinase 7	62	Linker.						ATP binding|protein binding|protein serine/threonine kinase activity			lung(11)|skin(5)|central_nervous_system(3)|ovary(2)|large_intestine(1)|stomach(1)	23			COAD - Colon adenocarcinoma(9;0.194)			GAGCCAGCTGGATGGGTGTGA	0.507000													16	49					0	0	0.000422831	0	0
FLRT3	23767	broad.mit.edu	37	20	14306599	14306599	+	Silent	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr20:14306599C>T	uc002wov.1	-	3	2021	c.1554G>A	c.(1552-1554)GAG>GAA	p.E518E	MACROD2_uc002wot.2_Intron|MACROD2_uc002wou.2_Intron|FLRT3_uc002wow.1_Silent_p.E518E	NM_198391	NP_938205	Q9NZU0	FLRT3_HUMAN	fibronectin leucine rich transmembrane protein 3	518	Extracellular (Potential).				cell adhesion	integral to plasma membrane|proteinaceous extracellular matrix	protein binding, bridging|receptor signaling protein activity			kidney(1)	1		Colorectal(1;0.0464)	COAD - Colon adenocarcinoma(2;0.129)	Colorectal(1;0.0393)		AAGGTTCTTTCTCTTGCTCTC	0.463000													20	52					0	0	0.00152264	0	0
FLRT3	23767	broad.mit.edu	37	20	14307372	14307372	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr20:14307372G>A	uc002wov.1	-	3	1248	c.781C>T	c.(781-783)CGG>TGG	p.R261W	MACROD2_uc002wot.2_Intron|MACROD2_uc002wou.2_Intron|FLRT3_uc002wow.1_Missense_Mutation_p.R261W	NM_198391	NP_938205	Q9NZU0	FLRT3_HUMAN	fibronectin leucine rich transmembrane protein 3	261	Extracellular (Potential).|LRR 9.				cell adhesion	integral to plasma membrane|proteinaceous extracellular matrix	protein binding, bridging|receptor signaling protein activity			kidney(1)	1		Colorectal(1;0.0464)	COAD - Colon adenocarcinoma(2;0.129)	Colorectal(1;0.0393)		GGGGGCACCCGATTGATGTGG	0.443000													7	64					0	0	0.00198382	0	0
DLGAP4	22839	broad.mit.edu	37	20	35060335	35060335	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr20:35060335C>T	uc002xff.2	+	3	650	c.215C>T	c.(214-216)CCC>CTC	p.P72L	DLGAP4_uc010zvp.1_Missense_Mutation_p.P72L	NM_014902	NP_055717	Q9Y2H0	DLGP4_HUMAN	disks large-associated protein 4 isoform a	72					cell-cell signaling	membrane	protein binding			skin(2)|ovary(1)	3	Breast(12;0.0192)	Myeloproliferative disorder(115;0.00878)				AGCACCTTTCCCCGCATCCAC	0.667000													10	29					0	0	0.000442599	0	0
SLC12A5	57468	broad.mit.edu	37	20	44672553	44672553	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr20:44672553G>A	uc010zxl.1	+	11	1520	c.1444G>A	c.(1444-1446)GGG>AGG	p.G482R	SLC12A5_uc010zxm.1_Intron|SLC12A5_uc002xrb.2_Missense_Mutation_p.G459R	NM_001134771	NP_001128243	Q9H2X9	S12A5_HUMAN	solute carrier family 12 (potassium-chloride	482	Cytoplasmic (Potential).				potassium ion transport|sodium ion transport	integral to membrane	potassium:chloride symporter activity			ovary(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5		Myeloproliferative disorder(115;0.0122)			Bumetanide(DB00887)|Potassium Chloride(DB00761)	CTGCATTGAGGGGGTCGTCCT	0.562000													6	116					0	0	0.00198382	0	0
CHRNA4	1137	broad.mit.edu	37	20	61981800	61981800	+	Silent	SNP	G	A	A	rs121912261		TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr20:61981800G>A	uc002yes.2	-	5	1141	c.963C>T	c.(961-963)ATC>ATT	p.I321I	CHRNA4_uc002yet.1_Silent_p.I145I|CHRNA4_uc011aaw.1_RNA|CHRNA4_uc010gke.1_Silent_p.I250I|CHRNA4_uc002yev.1_Silent_p.I145I|CHRNA4_uc010gkf.1_Silent_p.I145I	NM_000744	NP_000735	P43681	ACHA4_HUMAN	cholinergic receptor, nicotinic, alpha 4 subunit	321	Helical; (Potential).				B cell activation|behavioral response to nicotine|calcium ion transport|cognition|DNA repair|membrane depolarization|regulation of action potential|regulation of dopamine secretion|regulation of inhibitory postsynaptic membrane potential|response to hypoxia|response to oxidative stress|sensory perception of pain|synaptic transmission, cholinergic	cell junction|dendrite|external side of plasma membrane|membrane fraction|neuronal cell body|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity	p.I321I(1)		central_nervous_system(1)|skin(1)	2	all_cancers(38;1.71e-10)				Nicotine(DB00184)|Varenicline(DB01273)	CCGTGATGACGATGGACAGGG	0.607000													18	44					0	0	0.000566183	0	0
PTK6	5753	broad.mit.edu	37	20	62168598	62168598	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr20:62168598C>T	uc002yfg.2	-	1	110	c.70G>A	c.(70-72)GAC>AAC	p.D24N	PTK6_uc011aay.1_5'UTR|PTK6_uc011aba.1_Missense_Mutation_p.D24N	NM_005975	NP_005966	Q13882	PTK6_HUMAN	PTK6 protein tyrosine kinase 6	24	SH3.					cytoplasm|nucleus	ATP binding|non-membrane spanning protein tyrosine kinase activity			stomach(1)|kidney(1)	2	all_cancers(38;2.51e-11)		Epithelial(9;1.5e-08)|all cancers(9;8.67e-08)|BRCA - Breast invasive adenocarcinoma(10;6.43e-06)			AGCTCCTCGTCCGTCCGGGAC	0.711000													5	9					0	0	0.00198382	0	0
KCNE2	9992	broad.mit.edu	37	21	35743057	35743057	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr21:35743057G>A	uc002ytt.1	+	2	420	c.280G>A	c.(280-282)GAA>AAA	p.E94K		NM_172201	NP_751951	Q9Y6J6	KCNE2_HUMAN	potassium voltage-gated channel, Isk-related	94	Cytoplasmic (Potential).				blood circulation|muscle contraction|regulation of heart contraction	lysosome|voltage-gated potassium channel complex	voltage-gated potassium channel activity				0						GGACTGGCAGGAAAAGTACAA	0.493000													74	247					0	0	0.000781405	0	0
KCNJ6	3763	broad.mit.edu	37	21	39087307	39087307	+	Silent	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr21:39087307C>T	uc011aej.1	-	3	206	c.153G>A	c.(151-153)AGG>AGA	p.R51R	KCNJ6_uc002ywo.2_Silent_p.R51R	NM_002240	NP_002231	P48051	IRK6_HUMAN	potassium inwardly-rectifying channel J6	51	Cytoplasmic (By similarity).				synaptic transmission	Golgi apparatus|voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding			skin(1)	1					Halothane(DB01159)	TCTGGATTTTCCTTTTGGTCC	0.522000													12	105					0	0	0.00136819	0	0
C21orf29	54084	broad.mit.edu	37	21	45987855	45987855	+	Silent	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr21:45987855G>A	uc002zfe.1	-	2	183	c.117C>T	c.(115-117)GTC>GTT	p.V39V	C21orf29_uc010gpv.1_5'UTR	NM_144991	NP_659428	Q8WU66	TSEAR_HUMAN	chromosome 21 open reading frame 29 precursor	39					cell adhesion	extracellular region	structural molecule activity				0						CATCAGAAGGGACCACTTCCG	0.607000													9	30					0	0	0.000673444	0	0
VPREB1	7441	broad.mit.edu	37	22	22599667	22599668	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr22:22599667_22599668CC>AT	uc002zvx.1	+	2	382_383	c.356_357CC>AT	c.(355-357)GCC>GAT	p.A119D	LOC96610_uc011aim.1_Intron	NM_007128	NP_009059	P12018	VPREB_HUMAN	immunoglobulin iota chain precursor	119	Ig-like V-type.				immune response	extracellular region	antigen binding|protein binding				0	all_hematologic(9;0.0312)|Acute lymphoblastic leukemia(84;0.155)	all_cancers(3;3.14e-14)|Acute lymphoblastic leukemia(3;2.97e-57)|all_hematologic(3;5.9e-52)		READ - Rectum adenocarcinoma(21;0.145)		GCTATGGGGGCCCGCAGCTCgg	0.450000													4	6					0	0	6.4e-05	0	0
RTDR1	27156	broad.mit.edu	37	22	23476223	23476223	+	Silent	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr22:23476223C>T	uc002zwt.2	-	4	569	c.411G>A	c.(409-411)CAG>CAA	p.Q137Q	RTDR1_uc010gtv.1_Silent_p.Q137Q	NM_014433	NP_055248	Q9UHP6	RTDR1_HUMAN	rhabdoid tumor deletion region protein 1	137							binding			ovary(1)	1	all_hematologic(9;0.0197)|Acute lymphoblastic leukemia(84;0.181)			READ - Rectum adenocarcinoma(21;0.175)		CTCTAGGCACCTGGACCAGCT	0.572000													5	31					0	0	0.00116845	0	0
LARGE	9215	broad.mit.edu	37	22	34046528	34046528	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr22:34046528G>A	uc003and.3	-	4	812	c.233C>T	c.(232-234)GCC>GTC	p.A78V	LARGE_uc003ane.3_Missense_Mutation_p.A78V|LARGE_uc010gwp.2_Missense_Mutation_p.A78V|LARGE_uc011ame.1_Missense_Mutation_p.A10V|LARGE_uc011amf.1_Missense_Mutation_p.A78V	NM_004737	NP_004728	O95461	LARGE_HUMAN	like-glycosyltransferase	78	Lumenal (Potential).|Potential.				glycosphingolipid biosynthetic process|muscle cell homeostasis|N-acetylglucosamine metabolic process|protein glycosylation	integral to Golgi membrane	acetylglucosaminyltransferase activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Lung NSC(1;0.219)				CCTGCGGAGGGCGCGGTTCTC	0.697000													12	39					0	0	0.000978159	0	0
ENTHD1	150350	broad.mit.edu	37	22	40161585	40161585	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr22:40161585G>A	uc003ayg.2	-	6	1113	c.862C>T	c.(862-864)CCT>TCT	p.P288S		NM_152512	NP_689725	Q8IYW4	ENTD1_HUMAN	ENTH domain containing 1	288										ovary(2)|skin(1)	3	Melanoma(58;0.0749)					TGCCCAGAAGGACTATTTTCT	0.333000													7	96					0	0	0.00198382	0	0
MTMR14	64419	broad.mit.edu	37	3	9743578	9743578	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr3:9743578C>T	uc003brz.2	+	19	1998	c.1874C>T	c.(1873-1875)CCT>CTT	p.P625L	MTMR14_uc003bsa.2_Missense_Mutation_p.P573L|MTMR14_uc003bsb.2_Missense_Mutation_p.P513L|MTMR14_uc011ath.1_RNA|MTMR14_uc010hcl.2_Missense_Mutation_p.P267L|MTMR14_uc003bsc.2_RNA|CPNE9_uc003bsd.2_5'Flank	NM_001077525	NP_001070993	Q8NCE2	MTMRE_HUMAN	jumpy isoform 2	625						perinuclear region of cytoplasm|ruffle	phosphatidylinositol-3-phosphatase activity|protein tyrosine phosphatase activity			skin(1)	1	Medulloblastoma(99;0.227)					GCCCCCAGTCCTTCCGGTGCC	0.617000													5	74					0	0	0.00116845	0	0
AZI2	64343	broad.mit.edu	37	3	28382035	28382035	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr3:28382035G>A	uc003ceb.2	-	2	606	c.74C>T	c.(73-75)CCA>CTA	p.P25L	AZI2_uc003cec.2_5'UTR|AZI2_uc003ced.2_Missense_Mutation_p.P25L|AZI2_uc003cee.3_Missense_Mutation_p.P25L|AZI2_uc003ceg.2_Missense_Mutation_p.P25L|AZI2_uc011axd.1_Missense_Mutation_p.P25L|AZI2_uc003cef.2_Missense_Mutation_p.P25L	NM_022461	NP_071906	Q9H6S1	AZI2_HUMAN	5-azacytidine induced 2 isoform a	25						mitochondrion|plasma membrane				ovary(2)	2						TATTGAAACTGGAGTCACTGT	0.348000													21	51					0	0	0.00188189	0	0
TRANK1	9881	broad.mit.edu	37	3	36872539	36872539	+	Silent	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr3:36872539C>T	uc003cgj.2	-	12	7055	c.6753G>A	c.(6751-6753)GTG>GTA	p.V2251V		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	2801					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						TGGCCGGGTCCACCTTCTCGT	0.532000													8	150					0	0	0.000274275	0	0
SCN11A	11280	broad.mit.edu	37	3	38938441	38938441	+	Silent	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr3:38938441G>A	uc011ays.1	-	14	2497	c.2298C>T	c.(2296-2298)TGC>TGT	p.C766C	SCN11A_uc010hhn.1_5'Flank	NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	766	II.				response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	TCCATTCCCCGCAGAGGATGC	0.468000													10	36					0	0	0.000978159	0	0
TRAK1	22906	broad.mit.edu	37	3	42264731	42264731	+	Silent	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr3:42264731G>A	uc003cky.2	+	16	2580	c.2364G>A	c.(2362-2364)CAG>CAA	p.Q788Q	TRAK1_uc011azi.1_Silent_p.Q767Q	NM_001042646	NP_001036111	Q9UPV9	TRAK1_HUMAN	OGT(O-Glc-NAc transferase)-interacting protein	788					endosome to lysosome transport|protein O-linked glycosylation|protein targeting|regulation of transcription from RNA polymerase II promoter	early endosome|mitochondrion|nucleus				ovary(1)	1						CGCCTATGCAGACACCCACAT	0.627000													4	25					0	0	0.000602214	0	0
KIF15	56992	broad.mit.edu	37	3	44879877	44879877	+	Silent	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr3:44879877C>T	uc003cnx.3	+	27	3431	c.3282C>T	c.(3280-3282)ACC>ACT	p.T1094T	KIF15_uc010hiq.2_Silent_p.T997T|KIF15_uc010hir.2_Silent_p.T142T	NM_020242	NP_064627	Q9NS87	KIF15_HUMAN	kinesin family member 15	1094	Potential.				blood coagulation|cell proliferation|microtubule-based movement|mitosis	centrosome|cytosol|microtubule|plus-end kinesin complex|spindle	ATP binding|DNA binding|microtubule motor activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.0099)|KIRC - Kidney renal clear cell carcinoma(197;0.0564)|Kidney(197;0.0707)		AAGAACTGACCAAGAAGGAAG	0.463000													8	33					0	0	0.000157383	0	0
COL7A1	1294	broad.mit.edu	37	3	48629399	48629399	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr3:48629399G>A	uc003ctz.2	-	10	1290	c.1289C>T	c.(1288-1290)TCC>TTC	p.S430F		NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	430	Nonhelical region (NC1).|Fibronectin type-III 3.				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		AAGGAGGATGGATGTGGGGCC	0.657000													20	78					0	0	0.00278032	0	0
CELSR3	1951	broad.mit.edu	37	3	48686291	48686291	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr3:48686291C>G	uc003cul.2	-	18	6919	c.6638G>C	c.(6637-6639)CGG>CCG	p.R2213P	CELSR3_uc003cuf.1_Missense_Mutation_p.R2283P|CELSR3_uc010hkg.2_Missense_Mutation_p.R196P	NM_001407	NP_001398	Q9NYQ7	CELR3_HUMAN	cadherin EGF LAG seven-pass G-type receptor 3	2213	Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(5)|upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)	11				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		AGTCACCTCCCGTAGCCGCTG	0.592000													3	29					0	0	0.00024832	0	0
CELSR3	1951	broad.mit.edu	37	3	48691120	48691120	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr3:48691120G>A	uc003cul.2	-	9	5661	c.5380C>T	c.(5380-5382)CGG>TGG	p.R1794W	CELSR3_uc003cuf.1_Missense_Mutation_p.R1864W|CELSR3_uc010hkg.2_5'Flank	NM_001407	NP_001398	Q9NYQ7	CELR3_HUMAN	cadherin EGF LAG seven-pass G-type receptor 3	1794	Extracellular (Potential).|Laminin G-like 2.				homophilic cell adhesion|multicellular organismal development|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(5)|upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)	11				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		GCCCGTGTCCGAAATGCCAGC	0.602000													13	41					0	0	0.00136819	0	0
CACNA1D	776	broad.mit.edu	37	3	53758023	53758023	+	Silent	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr3:53758023C>T	uc003dgv.3	+	14	2260	c.2097C>T	c.(2095-2097)TTC>TTT	p.F699F	CACNA1D_uc003dgu.3_Silent_p.F719F|CACNA1D_uc003dgy.3_Silent_p.F699F|CACNA1D_uc003dgw.3_Silent_p.F366F	NM_001128840	NP_001122312	Q01668	CAC1D_HUMAN	calcium channel, voltage-dependent, L type,	699	Extracellular (Potential).|II.				axon guidance|energy reserve metabolic process|regulation of insulin secretion	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(6)|upper_aerodigestive_tract(2)|liver(1)|central_nervous_system(1)|skin(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.00029)|KIRC - Kidney renal clear cell carcinoma(284;0.0145)|Kidney(284;0.0175)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)	Verapamil(DB00661)	TCACAGTGTTCCAGGTGAGTC	0.493000													10	33					0	0	0.000442599	0	0
PROS1	5627	broad.mit.edu	37	3	93624753	93624753	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr3:93624753T>C	uc003drb.3	-	6	817	c.476A>G	c.(475-477)AAT>AGT	p.N159S	PROS1_uc010hoo.2_Missense_Mutation_p.N28S|PROS1_uc003dqz.3_Missense_Mutation_p.N28S	NM_000313	NP_000304	P07225	PROS_HUMAN	protein S, alpha preproprotein	159	EGF-like 2; calcium-binding (Potential).				leukocyte migration|peptidyl-glutamic acid carboxylation|platelet activation|platelet degranulation|post-translational protein modification|proteolysis	endoplasmic reticulum membrane|extracellular region|Golgi lumen|Golgi membrane|platelet alpha granule lumen	calcium ion binding|endopeptidase inhibitor activity			large_intestine(1)	1					Antihemophilic Factor(DB00025)|Drotrecogin alfa(DB00055)|Menadione(DB00170)	TTTGCATTCATTTATGTCTAA	0.353000													9	126					0	0	0.000274275	0	0
EPHA6	285220	broad.mit.edu	37	3	97439220	97439220	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr3:97439220G>A	uc010how.1	+	15	2943	c.2900G>A	c.(2899-2901)GGA>GAA	p.G967E	EPHA6_uc003drt.2_Missense_Mutation_p.G359E|EPHA6_uc010hox.1_RNA	NM_001080448	NP_001073917	Q9UF33	EPHA6_HUMAN	EPH receptor A6 isoform a	872	Protein kinase.|Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			stomach(5)|lung(4)|central_nervous_system(3)|breast(1)|skin(1)|ovary(1)|kidney(1)	16						ATGTCCTATGGAGAGAGACCT	0.448000													19	52					0	0	0.00121646	0	0
OR5H6	79295	broad.mit.edu	37	3	97983956	97983956	+	Silent	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr3:97983956G>A	uc003dsi.1	+	1	828	c.828G>A	c.(826-828)CTG>CTA	p.L276L		NM_001005479	NP_001005479	Q8NGV6	OR5H6_HUMAN	olfactory receptor, family 5, subfamily H,	276	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|large_intestine(1)	3						TCAAATATCTGGGCTCTGCAT	0.423000													8	25					0	0	0.000157383	0	0
KIAA1257	57501	broad.mit.edu	37	3	128697005	128697005	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr3:128697005G>A	uc003elj.3	-	5	887	c.691C>T	c.(691-693)CAG>TAG	p.Q231*	KIAA1257_uc003elg.1_Nonsense_Mutation_p.Q231*|KIAA1257_uc003eli.3_Nonsense_Mutation_p.Q119*	NM_020741	NP_065792	Q9ULG3	K1257_HUMAN	hypothetical protein LOC57501	231											0						AATTTTCTCTGATTTAAAACC	0.333000													20	80					0	0	0.00188189	0	0
NEK11	79858	broad.mit.edu	37	3	130889706	130889706	+	Missense_Mutation	SNP	T	G	G			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr3:130889706T>G	uc003eny.2	+	14	1700	c.1374T>G	c.(1372-1374)GAT>GAG	p.D458E	NEK11_uc003enx.2_Missense_Mutation_p.D458E|NEK11_uc003eoa.2_Missense_Mutation_p.D458E|NEK11_uc003enz.2_Missense_Mutation_p.D276E|NEK11_uc010htn.2_RNA|NEK11_uc011blk.1_Missense_Mutation_p.D274E|NEK11_uc011bll.1_Missense_Mutation_p.D353E|NEK11_uc011blm.1_Missense_Mutation_p.D458E	NM_024800	NP_079076	Q8NG66	NEK11_HUMAN	NIMA-related kinase 11 isoform 1	458					cell cycle|intra-S DNA damage checkpoint|intracellular protein kinase cascade	nucleolus	ATP binding|identical protein binding|metal ion binding|protein serine/threonine kinase activity			large_intestine(4)|stomach(1)|central_nervous_system(1)	6						TTGTAGAGGATGCCACATCTG	0.483000													6	174					0	0	0.00198382	0	0
COPB2	9276	broad.mit.edu	37	3	139090653	139090653	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr3:139090653C>A	uc003etf.3	-	10	1247	c.1117G>T	c.(1117-1119)GGG>TGG	p.G373W	COPB2_uc011bmv.1_Missense_Mutation_p.G344W|COPB2_uc010hui.2_Missense_Mutation_p.G344W	NM_004766	NP_004757	P35606	COPB2_HUMAN	coatomer protein complex, subunit beta 2 (beta	373	WD 7.				COPI coating of Golgi vesicle|intra-Golgi vesicle-mediated transport|intracellular protein transport|retrograde vesicle-mediated transport, Golgi to ER	COPI vesicle coat|cytosol	protein binding|structural molecule activity			ovary(2)	2						ATATACTCCCCATCACCACAC	0.433000													5	54					0.00116845	0.00503737	0.00116845	1	0
MFSD1	64747	broad.mit.edu	37	3	158523191	158523191	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr3:158523191C>T	uc003fcl.1	+	3	287	c.257C>T	c.(256-258)GCC>GTC	p.A86V	MFSD1_uc003fcm.1_Intron|MFSD1_uc003fcn.1_Intron|MFSD1_uc011bow.1_Intron|MFSD1_uc011box.1_Missense_Mutation_p.A13V	NM_022736	NP_073573	Q9H3U5	MFSD1_HUMAN	major facilitator superfamily domain containing	86	Helical; (Potential).				transmembrane transport	integral to membrane					0			Lung(72;0.00372)|LUSC - Lung squamous cell carcinoma(72;0.00523)			CTGCTGTATGCCTGGTATTCT	0.338000													35	143					0	0	0.00128727	0	0
LRRC15	131578	broad.mit.edu	37	3	194081662	194081662	+	Silent	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr3:194081662C>T	uc003ftu.2	-	2	197	c.111G>A	c.(109-111)GTG>GTA	p.V37V	LRRC15_uc003ftt.2_Silent_p.V43V	NM_130830	NP_570843	Q8TF66	LRC15_HUMAN	leucine rich repeat containing 15 isoform b	37	LRRNT.|Extracellular (Potential).					integral to membrane				ovary(3)	3	all_cancers(143;5.31e-09)|Ovarian(172;0.0634)		OV - Ovarian serous cystadenocarcinoma(49;2.2e-17)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;4.94e-05)		CGGTGCACTCCACCTGGGAGG	0.612000													5	15					0	0	0.000602214	0	0
ACAP2	23527	broad.mit.edu	37	3	195012536	195012536	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr3:195012536C>G	uc003fun.3	-	20	2203	c.1962G>C	c.(1960-1962)TTG>TTC	p.L654F		NM_012287	NP_036419	Q15057	ACAP2_HUMAN	centaurin, beta 2	654	ANK 1.				regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding			large_intestine(1)|ovary(1)	2						CACACGTCACCAAAGAGCCCT	0.413000													3	87					0	0	6.4e-05	0	0
SDHAP1	255812	broad.mit.edu	37	3	195701278	195701278	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr3:195701278C>T	uc011btq.1	-	8	1215	c.586G>A	c.(586-588)GTG>ATG	p.V196M	SDHAP1_uc003fvx.3_RNA|SDHAP1_uc011btp.1_RNA					SubName: Full=cDNA FLJ56858, highly similar to Succinate dehydrogenase (ubiquinone) flavoprotein subunit, mitochondrial (EC 1.3.5.1);												0						CAGGCCTGCACGACTCTGCGA	0.537000													7	18					0	0	0.000673444	0	0
OSTalpha	200931	broad.mit.edu	37	3	195955680	195955680	+	Silent	SNP	G	A	A	rs146316634	byFrequency	TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr3:195955680G>A	uc003fwd.2	+	6	723	c.522G>A	c.(520-522)AGG>AGA	p.R174R	OSTalpha_uc010iac.1_Silent_p.R58R|OSTalpha_uc003fwe.2_Silent_p.R41R	NM_152672	NP_689885	Q86UW1	OSTA_HUMAN	organic solute transporter alpha	174						integral to membrane|plasma membrane	transporter activity			ovary(1)	1	all_cancers(143;1.68e-08)|Ovarian(172;0.0634)|Breast(254;0.206)		Epithelial(36;8.83e-25)|all cancers(36;8.38e-23)|OV - Ovarian serous cystadenocarcinoma(49;7.08e-19)|LUSC - Lung squamous cell carcinoma(58;7.51e-07)|Lung(62;1.06e-06)	GBM - Glioblastoma multiforme(46;0.00202)		CCCCACTCAGGAAGAAGCTTC	0.607000													6	80					0	0	0.00198382	0	0
SH3TC1	54436	broad.mit.edu	37	4	8218686	8218686	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr4:8218686C>T	uc003gkv.3	+	7	732	c.631C>T	c.(631-633)CCC>TCC	p.P211S	SH3TC1_uc003gkw.3_Missense_Mutation_p.P135S|SH3TC1_uc003gkx.3_Intron	NM_018986	NP_061859	Q8TE82	S3TC1_HUMAN	SH3 domain and tetratricopeptide repeats 1	211							binding			large_intestine(2)|pancreas(1)	3						TTTTGAAGGGCCCTTCTTTGT	0.652000													7	31					0	0	0.000157383	0	0
HTRA3	94031	broad.mit.edu	37	4	8307709	8307709	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr4:8307709A>G	uc003gla.2	+	9	1412	c.1208A>G	c.(1207-1209)CAA>CGA	p.Q403R		NM_053044	NP_444272	P83110	HTRA3_HUMAN	HtrA serine peptidase 3 precursor	403	PDZ.				proteolysis|regulation of cell growth	extracellular region	insulin-like growth factor binding|serine-type endopeptidase activity			ovary(1)	1						GGCGGCATCCAAGATGGTGAC	0.647000													4	66					0	0	0.00024832	0	0
SEL1L3	23231	broad.mit.edu	37	4	25780745	25780745	+	Silent	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr4:25780745G>A	uc003gru.3	-	16	2690	c.2538C>T	c.(2536-2538)ATC>ATT	p.I846I	SEL1L3_uc003grv.2_Silent_p.I253I	NM_015187	NP_056002	Q68CR1	SE1L3_HUMAN	sel-1 suppressor of lin-12-like 3	846	Sel1-like 7.					integral to membrane	binding				0						GGTTGCCTGTGATATAGTAGA	0.438000													11	66					0	0	0.00136819	0	0
ARAP2	116984	broad.mit.edu	37	4	36163141	36163141	+	Silent	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr4:36163141G>A	uc003gsq.1	-	12	2543	c.2205C>T	c.(2203-2205)TCC>TCT	p.S735S	ARAP2_uc003gsr.1_Silent_p.S735S	NM_015230	NP_056045	Q8WZ64	ARAP2_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	735	Arf-GAP.				regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytosol	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						TTCTAACCTTGGAATCTTTTG	0.348000													8	48					0	0	0.000274275	0	0
LIMCH1	22998	broad.mit.edu	37	4	41664900	41664900	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr4:41664900C>T	uc003gvu.3	+	15	2089	c.2035C>T	c.(2035-2037)CCC>TCC	p.P679S	LIMCH1_uc003gvv.3_Missense_Mutation_p.P679S|LIMCH1_uc003gvw.3_Missense_Mutation_p.P679S|LIMCH1_uc003gvx.3_Missense_Mutation_p.P667S|LIMCH1_uc003gwe.3_Missense_Mutation_p.P679S|LIMCH1_uc003gvy.3_Missense_Mutation_p.P508S|LIMCH1_uc003gwa.3_Missense_Mutation_p.P520S|LIMCH1_uc003gvz.3_Missense_Mutation_p.P1064S|LIMCH1_uc011byu.1_Missense_Mutation_p.P513S|LIMCH1_uc003gwc.3_Missense_Mutation_p.P525S|LIMCH1_uc003gwd.3_Missense_Mutation_p.P513S|LIMCH1_uc011byv.1_Missense_Mutation_p.P430S|LIMCH1_uc011byw.1_5'UTR	NM_014988	NP_055803	Q9UPQ0	LIMC1_HUMAN	LIM and calponin homology domains 1 isoform a	679					actomyosin structure organization		actin binding|zinc ion binding			ovary(2)|pancreas(1)|skin(1)	4						TGTGGAATTTCCCTCCAGCCC	0.463000													7	42					0	0	0.00198382	0	0
PDGFRA	5156	broad.mit.edu	37	4	55152108	55152108	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr4:55152108C>T	uc003han.3	+	18	2871	c.2540C>T	c.(2539-2541)TCG>TTG	p.S847L	PDGFRA_uc003haa.2_Missense_Mutation_p.S607L	NM_006206	NP_006197	P16234	PGFRA_HUMAN	platelet-derived growth factor receptor alpha	847	Protein kinase.|Cytoplasmic (Potential).				cardiac myofibril assembly|cell activation|luteinization|metanephric glomerular capillary formation|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of DNA replication|positive regulation of fibroblast proliferation|protein autophosphorylation|retina vasculature development in camera-type eye	cytoplasm|integral to plasma membrane|nucleus	ATP binding|platelet-derived growth factor alpha-receptor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|protein homodimerization activity|vascular endothelial growth factor receptor activity	p.I843_S847>T(6)|p.M844_S847del(6)|p.H845_N848>P(3)|p.S847fs*1(1)|p.H845_N848del(1)|p.D842_S847>EA(1)|p.I843_S847>I(1)|p.D842_S847>RV(1)|p.I843_S847>L(1)|p.M844_S847>P(1)		soft_tissue(572)|small_intestine(40)|stomach(16)|lung(16)|central_nervous_system(13)|haematopoietic_and_lymphoid_tissue(7)|skin(3)|ovary(3)|gastrointestinal_tract_(site_indeterminate)(1)|autonomic_ganglia(1)|prostate(1)|bone(1)	674	all_cancers(7;0.000425)|all_lung(4;0.000343)|Lung NSC(11;0.000467)|all_epithelial(27;0.0131)|all_neural(26;0.0209)|Glioma(25;0.08)		GBM - Glioblastoma multiforme(1;4.18e-71)|all cancers(1;4.76e-45)|LUSC - Lung squamous cell carcinoma(32;0.00256)		Becaplermin(DB00102)|Imatinib(DB00619)|Sunitinib(DB01268)	ATGCATGATTCGAACTATGTG	0.493000			Mis|O|T	FIP1L1	GIST|idiopathic hypereosinophilic syndrome				Gastrointestinal_Stromal_Tumors_Sporadic_Multiple_Primary|Familial_Intestinal_Neurofibromatosis	TSP Lung(21;0.16)			10	93					0	0	0.000673444	0	0
UGT2B10	7365	broad.mit.edu	37	4	69884022	69884022	+	Missense_Mutation	SNP	G	A	A	rs147376959	by1000genomes	TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr4:69884022G>A	uc011cao.1	-	5	827	c.691C>T	c.(691-693)CCA>TCA	p.P231S	UGT2B10_uc011can.1_Missense_Mutation_p.P147S			P36537	UDB10_HUMAN	RecName: Full=UDP-glucuronosyltransferase 2B28;          Short=UDPGT 2B28;          EC=2.4.1.17; Flags: Precursor;	268					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(3)|ovary(2)	5						GGTAAGAATGGATGAGGAAAT	0.393000													6	72					0	0	0.00116845	0	0
ENAM	10117	broad.mit.edu	37	4	71500038	71500038	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr4:71500038G>A	uc011caw.1	+	6	505	c.224G>A	c.(223-225)GGG>GAG	p.G75E		NM_031889	NP_114095	Q9NRM1	ENAM_HUMAN	enamelin precursor	75					bone mineralization|odontogenesis	proteinaceous extracellular matrix	structural constituent of tooth enamel			ovary(3)	3			Lung(101;0.235)			GCACACCTGGGGCCCTTCTTT	0.493000													25	191					0	0	0.00106085	0	0
ART3	419	broad.mit.edu	37	4	77003022	77003022	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr4:77003022G>A	uc003hjo.2	+	3	234	c.115G>A	c.(115-117)GAA>AAA	p.E39K	ART3_uc003hji.2_Missense_Mutation_p.E39K|ART3_uc003hjj.2_Missense_Mutation_p.E39K|ART3_uc003hjk.2_Missense_Mutation_p.E39K|ART3_uc010ija.1_Missense_Mutation_p.E39K|ART3_uc003hjn.2_Missense_Mutation_p.E39K|ART3_uc003hjp.2_Intron|ART3_uc010ijb.2_Intron|ART3_uc003hjq.2_Intron|ART3_uc003hjr.2_Missense_Mutation_p.E9K|ART3_uc010ijc.2_Missense_Mutation_p.E9K|ART3_uc010ijd.2_Missense_Mutation_p.E9K	NM_001130016	NP_001123488	Q13508	NAR3_HUMAN	ADP-ribosyltransferase 3 isoform a	39					protein ADP-ribosylation	anchored to membrane|integral to plasma membrane	NAD(P)+-protein-arginine ADP-ribosyltransferase activity|NAD+ ADP-ribosyltransferase activity			ovary(2)	2			Lung(101;0.0809)|LUSC - Lung squamous cell carcinoma(112;0.0934)			ATTTGATGATGAATACCTGAA	0.363000													16	123					0	0	0.000566183	0	0
MTTP	4547	broad.mit.edu	37	4	100543903	100543903	+	Silent	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr4:100543903C>T	uc003hvc.3	+	19	2839	c.2583C>T	c.(2581-2583)AGC>AGT	p.S861S	MTTP_uc011cej.1_Silent_p.S888S	NM_000253	NP_000244	P55157	MTP_HUMAN	microsomal triglyceride transfer protein large	861					lipid metabolic process|lipoprotein metabolic process	endoplasmic reticulum lumen	lipid binding|lipid transporter activity			ovary(3)|central_nervous_system(1)	4				OV - Ovarian serous cystadenocarcinoma(123;6.04e-09)	Hesperetin(DB01094)	GAAAAGAAAGCGTATTAGCAG	0.438000													9	77					0	0	0.000442599	0	0
ARSJ	79642	broad.mit.edu	37	4	114824400	114824400	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr4:114824400C>T	uc003ibq.1	-	2	1718	c.830G>A	c.(829-831)AGG>AAG	p.R277K	ARSJ_uc010imu.1_Missense_Mutation_p.R277K|ARSJ_uc010imv.1_Missense_Mutation_p.R105K	NM_024590	NP_078866	Q5FYB0	ARSJ_HUMAN	arylsulfatase J precursor	277						extracellular region	arylsulfatase activity|metal ion binding			ovary(1)	1		Ovarian(17;0.0035)|Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.00194)		TTCGAAATACCTGCCAGGAGC	0.423000													5	63					0	0	0.000602214	0	0
FAT4	79633	broad.mit.edu	37	4	126370478	126370478	+	Missense_Mutation	SNP	T	G	G	rs148344513		TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr4:126370478T>G	uc003ifj.3	+	9	8307	c.8307T>G	c.(8305-8307)AAT>AAG	p.N2769K	FAT4_uc011cgp.1_Missense_Mutation_p.N1067K|FAT4_uc003ifi.1_Missense_Mutation_p.N247K	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	2769	Cadherin 26.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						AAAATGATAATGCCCCTAGGT	0.388000													9	75					0	0	0.00136819	0	0
FAT4	79633	broad.mit.edu	37	4	126373774	126373774	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr4:126373774C>T	uc003ifj.3	+	9	11603	c.11603C>T	c.(11602-11604)CCA>CTA	p.P3868L	FAT4_uc011cgp.1_Missense_Mutation_p.P2166L|FAT4_uc003ifi.1_Missense_Mutation_p.P1346L	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	3868	EGF-like 2; calcium-binding (Potential).|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						GAATGTCTTCCATCACCTTGC	0.483000													5	30					0	0	0.00116845	0	0
PCDH18	54510	broad.mit.edu	37	4	138452734	138452734	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr4:138452734G>A	uc003ihe.3	-	1	896	c.509C>T	c.(508-510)TCC>TTC	p.S170F	PCDH18_uc003ihf.3_Missense_Mutation_p.S163F|PCDH18_uc011cgz.1_Intron|PCDH18_uc003ihg.3_5'UTR|PCDH18_uc011cha.1_Intron	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	170	Extracellular (Potential).|Cadherin 2.				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					TGTGTGGAGGGAATTTTCCCC	0.458000													5	33					0	0	0.000602214	0	0
MGST2	4258	broad.mit.edu	37	4	140625252	140625252	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr4:140625252G>A	uc003ihy.2	+	5	646	c.394G>A	c.(394-396)GAT>AAT	p.D132N	MGST2_uc010ioi.1_RNA	NM_002413	NP_002404	Q99735	MGST2_HUMAN	microsomal glutathione S-transferase 2	132					glutathione biosynthetic process|leukotriene biosynthetic process|leukotriene production involved in inflammatory response|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome|nuclear membrane|plasma membrane	enzyme activator activity|glutathione peroxidase activity|glutathione transferase activity|leukotriene-C4 synthase activity			ovary(1)	1	all_hematologic(180;0.162)				Glutathione(DB00143)	CAGCTTTCTGGATGAATATCT	0.478000													6	82					0	0	0.00198382	0	0
SMARCA5	8467	broad.mit.edu	37	4	144468576	144468576	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr4:144468576G>A	uc003ijg.2	+	21	3154	c.2692G>A	c.(2692-2694)GAG>AAG	p.E898K		NM_003601	NP_003592	O60264	SMCA5_HUMAN	SWI/SNF-related matrix-associated	898					CenH3-containing nucleosome assembly at centromere|nucleosome positioning|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	condensed chromosome|nucleolus|nucleoplasm|NURF complex|RSF complex	ATP binding|ATPase activity|DNA binding|helicase activity|nucleosome binding|protein binding			skin(1)	1	all_hematologic(180;0.158)					CCAGGACATAGAGAAGATTAT	0.338000													10	48					0	0	0.000978159	0	0
MAB21L2	10586	broad.mit.edu	37	4	151504946	151504946	+	Silent	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr4:151504946G>A	uc003ilw.2	+	1	1870	c.765G>A	c.(763-765)AAG>AAA	p.K255K	LRBA_uc003ils.3_5'Flank|LRBA_uc003ilt.3_Intron|LRBA_uc003ilu.3_Intron|LRBA_uc010ipj.2_Intron	NM_006439	NP_006430	Q9Y586	MB212_HUMAN	mab-21-like protein 2	255					nervous system development	nucleus				ovary(1)	1	all_hematologic(180;0.151)			GBM - Glioblastoma multiforme(119;0.159)		CAGTGCTGAAGACTCTGCGGG	0.622000													11	27					0	0	0.000978159	0	0
FHDC1	85462	broad.mit.edu	37	4	153896921	153896921	+	Silent	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr4:153896921C>T	uc003inf.2	+	11	2553	c.2478C>T	c.(2476-2478)TCC>TCT	p.S826S		NM_033393	NP_203751	Q9C0D6	FHDC1_HUMAN	FH2 domain containing 1	826					actin cytoskeleton organization		actin binding			large_intestine(1)|ovary(1)	2	all_hematologic(180;0.093)					ACCCTACATCCAGCCCCCCTG	0.642000													16	62					0	0	0.000308642	0	0
FSTL5	56884	broad.mit.edu	37	4	162508718	162508718	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr4:162508718C>T	uc003iqh.2	-	8	1340	c.904G>A	c.(904-906)GAT>AAT	p.D302N	FSTL5_uc003iqi.2_Missense_Mutation_p.D301N|FSTL5_uc010iqv.2_Missense_Mutation_p.D301N	NM_020116	NP_064501	Q8N475	FSTL5_HUMAN	follistatin-like 5 isoform a	302	Ig-like 1.					extracellular region	calcium ion binding			ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|skin(1)	8	all_hematologic(180;0.24)			COAD - Colon adenocarcinoma(41;0.179)		GACCCATCATCTCCAAAGTCC	0.323000													5	64					0	0	0.000602214	0	0
ODZ3	55714	broad.mit.edu	37	4	183601489	183601489	+	Silent	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr4:183601489G>A	uc003ivd.1	+	8	1663	c.1626G>A	c.(1624-1626)CCG>CCA	p.P542P	ODZ3_uc003ive.1_5'UTR	NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	542	Extracellular (Potential).|EGF-like 1.				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		TTCTGGGTCCGGATTGTTCAA	0.413000													4	21					0	0	0.00024832	0	0
DNAH5	1767	broad.mit.edu	37	5	13841135	13841135	+	Silent	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr5:13841135G>A	uc003jfd.2	-	34	5631	c.5589C>T	c.(5587-5589)TTC>TTT	p.F1863F		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1863	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GTAGCTCCAGGAAAGCCTGAT	0.403000									Kartagener_syndrome				9	44					0	0	0.000274275	0	0
CDH18	1016	broad.mit.edu	37	5	19473773	19473773	+	Silent	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr5:19473773G>A	uc003jgc.2	-	12	2312	c.1935C>T	c.(1933-1935)ATC>ATT	p.I645I	CDH18_uc003jgd.2_Silent_p.I645I|CDH18_uc011cnm.1_3'UTR	NM_004934	NP_004925	Q13634	CAD18_HUMAN	cadherin 18, type 2 preproprotein	645	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|large_intestine(1)|skin(1)	7	Lung NSC(1;0.00734)|all_lung(1;0.0197)					CTTCTGAAATGATCAAGGGCT	0.453000													31	102					0	0	0.00058488	0	0
CDH9	1007	broad.mit.edu	37	5	26881418	26881418	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr5:26881418C>T	uc003jgs.1	-	12	2366	c.2197G>A	c.(2197-2199)GAT>AAT	p.D733N	CDH9_uc011cnv.1_Missense_Mutation_p.D326N	NM_016279	NP_057363	Q9ULB4	CADH9_HUMAN	cadherin 9, type 2 preproprotein	733	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)	9						GCCAGCGAATCATATGGAGGT	0.413000													11	24					0	0	0.000673444	0	0
PDZD2	23037	broad.mit.edu	37	5	32053902	32053902	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr5:32053902C>T	uc003jhl.2	+	10	2201	c.1813C>T	c.(1813-1815)CGA>TGA	p.R605*	PDZD2_uc003jhm.2_Nonsense_Mutation_p.R605*|PDZD2_uc011cnx.1_Nonsense_Mutation_p.R431*	NM_178140	NP_835260	O15018	PDZD2_HUMAN	PDZ domain containing 2	605	PDZ 3.				cell adhesion	cell-cell junction|endoplasmic reticulum|extracellular region|nucleus				central_nervous_system(4)|ovary(2)|skin(2)|large_intestine(1)	9						TGCTGGAGGTCGAGACTGCAT	0.483000													7	107					0	0	0.000157383	0	0
GZMA	3001	broad.mit.edu	37	5	54404140	54404140	+	Missense_Mutation	SNP	G	A	A	rs142064253		TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr5:54404140G>A	uc003jpm.2	+	4	582	c.545G>A	c.(544-546)CGA>CAA	p.R182Q		NM_006144	NP_006135	P12544	GRAA_HUMAN	granzyme A precursor	182	Peptidase S1.				cleavage of lamin|cytolysis|immune response|negative regulation of DNA binding|negative regulation of endodeoxyribonuclease activity|negative regulation of oxidoreductase activity|positive regulation of apoptosis	extracellular region|immunological synapse|nucleus	protein homodimerization activity|serine-type endopeptidase activity			ovary(2)|pancreas(1)|skin(1)	4		Lung NSC(810;4.08e-05)|Breast(144;0.0433)|Prostate(74;0.183)				TGCAATGATCGAAATCACTAT	0.428000													15	40					0	0	0.000308642	0	0
MAST4	375449	broad.mit.edu	37	5	66427663	66427663	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr5:66427663G>A	uc003jut.1	+	15	1478	c.1410G>A	c.(1408-1410)ATG>ATA	p.M470I	MAST4_uc003juu.1_Missense_Mutation_p.M480I|MAST4_uc011cra.1_Missense_Mutation_p.M453I|MAST4_uc003juv.2_Missense_Mutation_p.M465I|MAST4_uc003juw.2_Missense_Mutation_p.M465I	NM_015183	NP_055998	O15021	MAST4_HUMAN	microtubule associated serine/threonine kinase	662	Protein kinase.					cytoplasm	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			lung(6)|ovary(2)|kidney(2)|breast(2)|central_nervous_system(1)	13		Lung NSC(167;8.56e-06)|Prostate(74;0.00637)|Ovarian(174;0.0563)|Breast(144;0.0586)|Colorectal(97;0.245)		Lung(70;0.011)		CTACTTTAATGAAAAACATGG	0.398000													16	53					0	0	0.000566183	0	0
RGNEF	64283	broad.mit.edu	37	5	73153511	73153511	+	Silent	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr5:73153511C>T	uc011csq.1	+	14	1832	c.1821C>T	c.(1819-1821)ATC>ATT	p.I607I	RGNEF_uc003kcx.2_Silent_p.I607I|RGNEF_uc010izf.2_Silent_p.I607I|RGNEF_uc011csr.1_Silent_p.I294I	NM_001080479	NP_001073948	Q8N1W1	RGNEF_HUMAN	Rho-guanine nucleotide exchange factor	607					cell differentiation|intracellular signal transduction|regulation of Rho protein signal transduction	cytoplasm|plasma membrane	metal ion binding|Rho guanyl-nucleotide exchange factor activity|RNA binding				0		Lung NSC(167;0.0378)|all_lung(232;0.04)|Ovarian(174;0.0798)		OV - Ovarian serous cystadenocarcinoma(47;1.25e-51)		ATAAATACATCATACCTGCCA	0.323000													4	6					0	0	0.00024832	0	0
AP3S1	1176	broad.mit.edu	37	5	115238627	115238627	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr5:115238627G>A	uc003krl.2	+	5	507	c.391G>A	c.(391-393)GAG>AAG	p.E131K	AP3S1_uc003krk.2_Missense_Mutation_p.E109K|AP3S1_uc003krm.2_Intron	NM_001284	NP_001275	Q92572	AP3S1_HUMAN	adaptor-related protein complex 3, sigma 1	131					insulin receptor signaling pathway|intracellular protein transport|vesicle-mediated transport	AP-type membrane coat adaptor complex|cytoplasmic vesicle membrane|Golgi apparatus|transport vesicle	protein binding|protein transporter activity				0		all_cancers(142;0.00377)|all_epithelial(76;0.000129)|Prostate(80;0.0132)|Ovarian(225;0.0776)|Lung NSC(810;0.245)		OV - Ovarian serous cystadenocarcinoma(64;1.08e-07)|Epithelial(69;1.11e-06)|all cancers(49;5.2e-05)		AATGGTATTGGAGACAAATAT	0.323000													4	50					0	0	0.000602214	0	0
PCDHA7	56141	broad.mit.edu	37	5	140214183	140214183	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr5:140214183G>A	uc003lhq.2	+	1	215	c.215G>A	c.(214-216)GGG>GAG	p.G72E	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc011dac.1_Missense_Mutation_p.G72E	NM_018910	NP_061733	Q9UN72	PCDA7_HUMAN	protocadherin alpha 7 isoform 1 precursor	72	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AAATTCCGTGGGGATCTTCTG	0.617000													45	108					0	0	0.000680045	0	0
PCDHA8	56140	broad.mit.edu	37	5	140221176	140221176	+	Silent	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr5:140221176C>T	uc003lhs.2	+	1	270	c.270C>T	c.(268-270)ATC>ATT	p.I90I	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhr.1_Silent_p.I90I	NM_018911	NP_061734	Q9Y5H6	PCDA8_HUMAN	protocadherin alpha 8 isoform 1 precursor	90	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			upper_aerodigestive_tract(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ATTCTCGGATCGACCGCGAGG	0.612000													33	96					0	0	0.000953801	0	0
PCDHB10	56126	broad.mit.edu	37	5	140573298	140573298	+	Silent	SNP	C	T	T	rs139481353		TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr5:140573298C>T	uc003lix.2	+	1	1347	c.1173C>T	c.(1171-1173)TTC>TTT	p.F391F		NM_018930	NP_061753	Q9UN67	PCDBA_HUMAN	protocadherin beta 10 precursor	391	Cadherin 4.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ATCTGCCATTCCTACTAAAAC	0.433000													5	31					0	0	0.000602214	0	0
CDHR2	54825	broad.mit.edu	37	5	176011785	176011785	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr5:176011785G>A	uc003mem.1	+	19	2569	c.2503G>A	c.(2503-2505)GAT>AAT	p.D835N	CDHR2_uc003men.1_Missense_Mutation_p.D835N	NM_017675	NP_060145	Q9BYE9	CDHR2_HUMAN	protocadherin LKC precursor	835	Extracellular (Potential).|Cadherin 8.				homophilic cell adhesion|negative regulation of cell growth	apical plasma membrane|cell junction|integral to membrane	calcium ion binding|protein binding			ovary(2)	2						GGTTGCCTCGGATGTGGACAC	0.612000													18	59					0	0	0.000958276	0	0
ZNF354B	117608	broad.mit.edu	37	5	178309887	178309887	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr5:178309887C>T	uc003mjl.2	+	5	660	c.434C>T	c.(433-435)TCA>TTA	p.S145L	ZNF354B_uc003mjm.2_Missense_Mutation_p.S145L	NM_058230	NP_478137	Q96LW1	Z354B_HUMAN	zinc finger protein 354B	145					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2	all_cancers(89;0.000639)|all_epithelial(37;0.000109)|Renal(175;0.000159)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CAAATAATTTCAGTTGCCCAT	0.328000													7	31					0	0	0.00198382	0	0
TRIM15	89870	broad.mit.edu	37	6	30137018	30137018	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr6:30137018G>A	uc010jrx.2	+	4	1188	c.709G>A	c.(709-711)GAT>AAT	p.D237N		NM_033229	NP_150232	Q9C019	TRI15_HUMAN	tripartite motif protein 15	237					mesodermal cell fate determination	intracellular	zinc ion binding				0						TCTTTTGCAGGATGTCAGAGT	0.463000													15	50					0	0	0.000566183	0	0
CYP21A2	1589	broad.mit.edu	37	6	32008250	32008250	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr6:32008250C>T	uc003nze.1	+	8	1125	c.1007C>T	c.(1006-1008)CCC>CTC	p.P336L	CYP21A2_uc003nzf.1_Missense_Mutation_p.P306L	NM_000500	NP_000491	P08686	CP21A_HUMAN	cytochrome P450, family 21, subfamily A,	335					glucocorticoid biosynthetic process|mineralocorticoid biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	electron carrier activity|heme binding|steroid 21-monooxygenase activity|steroid binding				0						TCCCGGGTCCCCTACAAGGAC	0.667000													20	124					0	0	0.00278032	0	0
TREML1	340205	broad.mit.edu	37	6	41117514	41117514	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr6:41117514C>T	uc011duc.1	-	6	808	c.764G>A	c.(763-765)GGA>GAA	p.G255E	TREML1_uc003opx.2_3'UTR|TREML1_uc011dud.1_Missense_Mutation_p.G144E	NM_178174	NP_835468	Q86YW5	TRML1_HUMAN	triggering receptor expressed on myeloid	255	Pro-rich.|Cytoplasmic (Potential).				calcium-mediated signaling|innate immune response|platelet activation	cell surface|integral to membrane|plasma membrane|platelet alpha granule	protein binding|receptor activity			breast(1)	1	Ovarian(28;0.0418)|Colorectal(47;0.196)					TGAAGGTTTTCCTGATGGGGA	0.512000													10	61					0	0	0.000978159	0	0
PTCRA	171558	broad.mit.edu	37	6	42891008	42891008	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr6:42891008C>T	uc003osx.2	+	2	383	c.302C>T	c.(301-303)TCC>TTC	p.S101F	PTCRA_uc011duz.1_Missense_Mutation_p.P112S|PTCRA_uc010jxx.1_Missense_Mutation_p.P62S|PTCRA_uc010jxy.2_Missense_Mutation_p.S76F|PTCRA_uc010jxz.2_Intron	NM_138296	NP_612153	Q6ISU1	PTCRA_HUMAN	pre T-cell antigen receptor alpha precursor	101	Extracellular (Potential).					integral to membrane	receptor activity			ovary(2)	2	Colorectal(47;0.196)		all cancers(41;0.000731)|Colorectal(64;0.00237)|COAD - Colon adenocarcinoma(64;0.00473)|KIRC - Kidney renal clear cell carcinoma(15;0.02)|OV - Ovarian serous cystadenocarcinoma(102;0.0218)|Kidney(15;0.0388)			GAGCTGGCATCCTGGGAGCCT	0.627000													11	54					0	0	0.000978159	0	0
GFRAL	389400	broad.mit.edu	37	6	55266587	55266587	+	Splice_Site	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr6:55266587G>A	uc003pcm.1	+	9	1208	c.1122_splice	c.e9-1	p.R374_splice		NM_207410	NP_997293	Q6UXV0	GFRAL_HUMAN	GDNF family receptor alpha like precursor							integral to membrane	receptor activity			ovary(1)|breast(1)	2	Lung NSC(77;0.0875)|Renal(3;0.122)		LUSC - Lung squamous cell carcinoma(124;0.23)			ATTTTATACAGAACTTCCAGA	0.358000													7	36					0	0	0.000157383	0	0
KCNQ5	56479	broad.mit.edu	37	6	73879504	73879504	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr6:73879504G>A	uc003pgk.2	+	11	1851	c.1504G>A	c.(1504-1506)GAA>AAA	p.E502K	KCNQ5_uc011dyh.1_Missense_Mutation_p.E521K|KCNQ5_uc011dyi.1_Missense_Mutation_p.E512K|KCNQ5_uc010kat.2_Missense_Mutation_p.E493K|KCNQ5_uc011dyj.1_Intron|KCNQ5_uc011dyk.1_Missense_Mutation_p.E252K	NM_019842	NP_062816	Q9NR82	KCNQ5_HUMAN	potassium voltage-gated channel, KQT-like	502					protein complex assembly|synaptic transmission	voltage-gated potassium channel complex	inward rectifier potassium channel activity			ovary(4)|large_intestine(2)|skin(1)	7		all_epithelial(107;0.116)|Lung NSC(302;0.219)		COAD - Colon adenocarcinoma(1;0.0107)|Colorectal(1;0.0583)		TGTATATGATGAAAAAGGATG	0.418000													8	49					0	0	0.000673444	0	0
SIM1	6492	broad.mit.edu	37	6	100838556	100838556	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr6:100838556G>A	uc003pqj.3	-	11	2189	c.1982C>T	c.(1981-1983)CCC>CTC	p.P661L	SIM1_uc010kcu.2_Missense_Mutation_p.P661L	NM_005068	NP_005059	P81133	SIM1_HUMAN	single-minded homolog 1	661	Single-minded C-terminal.				cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			ovary(4)	4		all_cancers(76;9.88e-06)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.0248)|Colorectal(196;0.13)		BRCA - Breast invasive adenocarcinoma(108;0.0774)		ATCCGAATTGGGACTACTTAT	0.458000													10	164					0	0	0.000442599	0	0
SYNE1	23345	broad.mit.edu	37	6	152644639	152644639	+	Silent	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr6:152644639G>A	uc010kiw.2	-	82	16493	c.15891C>T	c.(15889-15891)ATC>ATT	p.I5297I	SYNE1_uc003qot.3_Silent_p.I5226I|SYNE1_uc003qou.3_Silent_p.I5297I|SYNE1_uc010kiz.2_Silent_p.I1052I	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	5297	Potential.|Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		GCATGGCGGTGATTTCCTGCA	0.438000										HNSCC(10;0.0054)			14	55					0	0	0.000308642	0	0
RPS6KA2	6196	broad.mit.edu	37	6	166918061	166918061	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr6:166918061C>G	uc003qvb.1	-	6	718	c.499G>C	c.(499-501)GAG>CAG	p.E167Q	RPS6KA2_uc011ego.1_Missense_Mutation_p.E78Q|RPS6KA2_uc010kkl.1_Missense_Mutation_p.E78Q|RPS6KA2_uc003qvc.1_Missense_Mutation_p.E175Q|RPS6KA2_uc003qvd.1_Missense_Mutation_p.E192Q	NM_021135	NP_066958	Q15349	KS6A2_HUMAN	ribosomal protein S6 kinase, 90kDa, polypeptide	167	Protein kinase 1.				axon guidance|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|stress-activated MAPK cascade|synaptic transmission|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(2)|lung(2)|skin(2)|large_intestine(1)|central_nervous_system(1)	8		Breast(66;2.04e-05)|Ovarian(120;0.0652)|Prostate(117;0.105)		OV - Ovarian serous cystadenocarcinoma(33;2.76e-18)|GBM - Glioblastoma multiforme(31;9.94e-06)|BRCA - Breast invasive adenocarcinoma(81;1.36e-05)		AAGGCCAGCTCAGCCAGGTAG	0.423000													3	70					0	0	0.00024832	0	0
CCDC129	223075	broad.mit.edu	37	7	31617900	31617900	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr7:31617900C>T	uc003tcj.1	+	8	2015	c.1022C>T	c.(1021-1023)TCT>TTT	p.S341F	CCDC129_uc011kad.1_Missense_Mutation_p.S351F|CCDC129_uc003tci.1_Intron|CCDC129_uc011kae.1_Missense_Mutation_p.S367F|CCDC129_uc003tck.1_Missense_Mutation_p.S249F	NM_194300	NP_919276	Q6ZRS4	CC129_HUMAN	coiled-coil domain containing 129	341											0						CCTTGCTCATCTATGCCGGCC	0.498000													6	48					0	0	0.00116845	0	0
GCK	2645	broad.mit.edu	37	7	44189389	44189389	+	Missense_Mutation	SNP	C	T	T	rs147065275		TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr7:44189389C>T	uc003tkl.2	-	6	1119	c.649G>A	c.(649-651)GAC>AAC	p.D217N	GCK_uc003tkj.1_Missense_Mutation_p.D216N|GCK_uc003tkk.1_Missense_Mutation_p.D218N	NM_000162	NP_000153	P35557	HXK4_HUMAN	glucokinase isoform 1	217					cellular response to insulin stimulus|cellular response to leptin stimulus|detection of glucose|endocrine pancreas development|glucose homeostasis|glucose transport|glycolysis|negative regulation of gluconeogenesis|positive regulation of glycogen biosynthetic process|positive regulation of insulin secretion|regulation of glucose transport|regulation of glycolysis|transmembrane transport	cytosol|nucleoplasm	ATP binding|glucokinase activity|glucose binding|protein binding			skin(3)|lung(1)	4						CACTGATGGTCTTCGTAGTAG	0.567000													100	271					0	0	0.000781405	0	0
RABGEF1	27342	broad.mit.edu	37	7	66264330	66264330	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr7:66264330C>T	uc011kee.1	+	7	955	c.791C>T	c.(790-792)CCT>CTT	p.P264L	RABGEF1_uc003tvf.2_Missense_Mutation_p.P123L|RABGEF1_uc003tvg.2_Missense_Mutation_p.P58L|RABGEF1_uc010lag.2_Missense_Mutation_p.P250L|RABGEF1_uc003tvh.2_Missense_Mutation_p.P250L|RABGEF1_uc003tvi.2_Missense_Mutation_p.P84L	NM_014504	NP_055319	Q9UJ41	RABX5_HUMAN	RAB guanine nucleotide exchange factor (GEF) 1	467	VPS9.				endocytosis|protein transport	early endosome|recycling endosome	DNA binding|protein binding|zinc ion binding			ovary(1)	1						TGGGTTACGCCTCAGATGCTG	0.478000													7	72					0	0	0.000157383	0	0
FKBP6	8468	broad.mit.edu	37	7	72755321	72755321	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr7:72755321G>A	uc003tya.2	+	7	965	c.833G>A	c.(832-834)CGA>CAA	p.R278Q	FKBP6_uc003twz.2_Missense_Mutation_p.R248Q|FKBP6_uc011kew.1_Missense_Mutation_p.R273Q|FKBP6_uc010lbe.1_RNA	NM_003602	NP_003593	O75344	FKBP6_HUMAN	FK506 binding protein 6 isoform a	278	TPR 3.				protein folding	membrane	FK506 binding|peptidyl-prolyl cis-trans isomerase activity				0		Lung NSC(55;0.0908)|all_lung(88;0.198)				TTTCTAGTTCGAGCCCAGAAG	0.448000													12	155					0	0	0.00185496	0	0
ELN	2006	broad.mit.edu	37	7	73474338	73474338	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr7:73474338G>A	uc003tzw.2	+	23	1646	c.1555G>A	c.(1555-1557)GTT>ATT	p.V519I	RFC2_uc011kfa.1_Intron|ELN_uc003tzn.2_Missense_Mutation_p.V513I|ELN_uc003tzz.2_Missense_Mutation_p.V432I|ELN_uc003tzo.2_Missense_Mutation_p.V480I|ELN_uc003tzp.2_Missense_Mutation_p.V424I|ELN_uc003tzq.2_Missense_Mutation_p.V377I|ELN_uc003tzr.2_Intron|ELN_uc003tzs.2_Missense_Mutation_p.V494I|ELN_uc003tzt.2_Missense_Mutation_p.V518I|ELN_uc003tzu.2_Missense_Mutation_p.V499I|ELN_uc003tzv.2_Missense_Mutation_p.V484I|ELN_uc003tzx.2_Missense_Mutation_p.V503I|ELN_uc011kff.1_Missense_Mutation_p.V513I|ELN_uc003tzy.2_Missense_Mutation_p.V489I	NM_000501	NP_001075224	P15502	ELN_HUMAN	elastin isoform a precursor	542	Ala-rich.				blood circulation|cell proliferation|organ morphogenesis|respiratory gaseous exchange	proteinaceous extracellular matrix	extracellular matrix constituent conferring elasticity|protein binding			ovary(3)|pancreas(2)	5		Lung NSC(55;0.159)			Rofecoxib(DB00533)	GGCTCCTGGCGTTGGCGTGGC	0.657000			T	PAX5	B-ALL		Supravalvular Aortic Stenosis|Cutis laxa |Williams-Beuren Syndrome						10	136					0	0	0.000673444	0	0
CD36	948	broad.mit.edu	37	7	80302686	80302686	+	Silent	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr7:80302686G>A	uc003uhc.2	+	16	1899	c.1215G>A	c.(1213-1215)CTG>CTA	p.L405L	CD36_uc003uhd.3_Silent_p.L405L|CD36_uc011kgv.1_Silent_p.L329L|CD36_uc003uhe.3_Silent_p.L405L|CD36_uc003uhf.3_Silent_p.L405L|CD36_uc003uhg.3_Silent_p.L405L|CD36_uc003uhh.3_Silent_p.L405L	NM_001127444	NP_001120916	P16671	CD36_HUMAN	CD36 antigen	405	Extracellular (Potential).				cell adhesion|cGMP-mediated signaling|cholesterol transport|lipid metabolic process|lipid storage|lipoprotein transport|low-density lipoprotein particle clearance|nitric oxide mediated signal transduction|plasma membrane long-chain fatty acid transport|platelet activation|platelet degranulation|positive regulation of cell-matrix adhesion|positive regulation of macrophage derived foam cell differentiation	integral to plasma membrane|membrane fraction|platelet alpha granule membrane	lipid binding|low-density lipoprotein receptor activity|thrombospondin receptor activity|transforming growth factor beta binding			ovary(1)	1						TAAAGAATCTGAAGAGGAACT	0.224000													8	92					0	0	0.000274275	0	0
NPTX2	4885	broad.mit.edu	37	7	98254310	98254310	+	Silent	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr7:98254310C>T	uc003upl.2	+	3	897	c.720C>T	c.(718-720)ATC>ATT	p.I240I		NM_002523	NP_002514	P47972	NPTX2_HUMAN	neuronal pentraxin II precursor	240	Pentaxin.				synaptic transmission	extracellular region	metal ion binding|sugar binding			central_nervous_system(2)|skin(1)	3	all_cancers(62;2.28e-09)|all_epithelial(64;4.86e-10)|Esophageal squamous(72;0.00918)|Lung NSC(181;0.0128)|all_lung(186;0.0142)		STAD - Stomach adenocarcinoma(171;0.215)			ACGGCAAGATCAAGAAGACGC	0.592000													35	108					0	0	0.00111076	0	0
MUC17	140453	broad.mit.edu	37	7	100681536	100681536	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr7:100681536C>T	uc003uxp.1	+	3	6892	c.6839C>T	c.(6838-6840)CCA>CTA	p.P2280L	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	2280	Extracellular (Potential).|Ser-rich.|59 X approximate tandem repeats.|36.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					GGAACGACTCCATTAACAAGT	0.473000													72	154					0	0	0.000781405	0	0
SLC26A5	375611	broad.mit.edu	37	7	103053510	103053510	+	Silent	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr7:103053510G>A	uc003vbz.2	-	5	578	c.342C>T	c.(340-342)TAC>TAT	p.Y114Y	SLC26A5_uc003vbt.1_Silent_p.Y114Y|SLC26A5_uc003vbu.1_Silent_p.Y114Y|SLC26A5_uc003vbv.1_Silent_p.Y114Y|SLC26A5_uc003vbw.2_RNA|SLC26A5_uc003vbx.2_Silent_p.Y114Y|SLC26A5_uc003vby.2_RNA|SLC26A5_uc010liy.2_RNA	NM_198999	NP_945350	P58743	S26A5_HUMAN	prestin isoform a	114	Helical; Name=2; (Potential).				regulation of cell shape|sensory perception of sound	integral to membrane	secondary active sulfate transmembrane transporter activity			ovary(1)	1						AAAATGAAGAGTACAGGCCAA	0.398000													6	45					0	0	0.00198382	0	0
CBLL1	79872	broad.mit.edu	37	7	107393930	107393930	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr7:107393930C>T	uc003veq.2	+	3	586	c.256C>T	c.(256-258)CCT>TCT	p.P86S	CBLL1_uc011kme.1_5'UTR|CBLL1_uc011kmf.1_Missense_Mutation_p.P85S	NM_024814	NP_079090	Q75N03	HAKAI_HUMAN	Cas-Br-M (murine) ecotropic retroviral	86					cell-cell adhesion|negative regulation of cell adhesion|positive regulation of cell migration|positive regulation of endocytosis		protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(2)|skin(2)|lung(1)	5						GCGAAGATTTCCTGGACACCT	0.254000													22	39					0	0	0.00047179	0	0
GRM8	2918	broad.mit.edu	37	7	126086222	126086222	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr7:126086222C>T	uc003vlr.2	-	9	2946	c.2635G>A	c.(2635-2637)GGC>AGC	p.G879S	GRM8_uc003vls.2_RNA|GRM8_uc011kof.1_RNA|GRM8_uc003vlt.2_Missense_Mutation_p.G879S|GRM8_uc010lkz.1_RNA	NM_000845	NP_000836	O00222	GRM8_HUMAN	glutamate receptor, metabotropic 8 isoform a	879	Cytoplasmic (Potential).				negative regulation of cAMP biosynthetic process|sensory perception of smell|visual perception	integral to plasma membrane				lung(15)|ovary(5)|pancreas(1)|breast(1)|skin(1)	23		Prostate(267;0.186)			L-Glutamic Acid(DB00142)	TTCACCTCGCCATTTGGTCTG	0.448000										HNSCC(24;0.065)			22	70					0	0	0.00188189	0	0
FLNC	2318	broad.mit.edu	37	7	128494537	128494537	+	Silent	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr7:128494537C>T	uc003vnz.3	+	41	7007	c.6798C>T	c.(6796-6798)ATC>ATT	p.I2266I	FLNC_uc003voa.3_Silent_p.I2233I	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	2266	Filamin 20.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						CCGCAGAGATCGTCGAGGGCG	0.642000													4	10					0	0	0.000602214	0	0
ADCK2	90956	broad.mit.edu	37	7	140374464	140374464	+	Silent	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr7:140374464G>A	uc003vvy.1	+	2	1165	c.987G>A	c.(985-987)AAG>AAA	p.K329K	ADCK2_uc003vvz.2_Silent_p.K329K	NM_052853	NP_443085	Q7Z695	ADCK2_HUMAN	aarF domain containing kinase 2	329	Protein kinase.					integral to membrane	ATP binding|protein serine/threonine kinase activity				0	Melanoma(164;0.00956)					TGCTGATGAAGATTGGCAGCC	0.532000													18	39					0	0	0.00074312	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				27	47					0	0	0.00127121	0	0
PRSS1	5644	broad.mit.edu	37	7	142459860	142459860	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr7:142459860A>T	uc003wak.2	+	3	453	c.436A>T	c.(436-438)AAC>TAC	p.N146Y	uc011krr.1_Intron|uc003vzp.2_Intron|uc011ksh.1_Intron|uc011ksi.1_Intron|uc003vzw.1_Intron|uc010loj.1_Intron|uc003wad.2_Intron|uc003wag.1_Intron|TRY6_uc011ksn.1_Intron|PRSS1_uc003wam.2_Missense_Mutation_p.N86Y	NM_002769	NP_002760	P07477	TRY1_HUMAN	protease, serine, 1 preproprotein	146	Peptidase S1.				digestion|proteolysis	extracellular space	metal ion binding|protein binding|serine-type endopeptidase activity			large_intestine(1)|central_nervous_system(1)	2	Melanoma(164;0.047)	all_cancers(3;2.14e-49)|Acute lymphoblastic leukemia(3;7.3e-185)|all_hematologic(3;1.1e-165)	all cancers(2;0.000126)|Colorectal(2;0.000157)|Epithelial(2;0.000191)|COAD - Colon adenocarcinoma(2;0.00189)			TGGCTGGGGCAACACTGCGAG	0.577000									Hereditary_Pancreatitis				9	65					0	0	0.000442599	0	0
TRPV5	56302	broad.mit.edu	37	7	142612069	142612069	+	Silent	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr7:142612069G>A	uc003wby.1	-	11	1698	c.1434C>T	c.(1432-1434)TTC>TTT	p.F478F		NM_019841	NP_062815	Q9NQA5	TRPV5_HUMAN	transient receptor potential cation channel,	478	Cytoplasmic (Potential).				protein tetramerization	apical plasma membrane|integral to plasma membrane	calcium channel activity			ovary(3)|central_nervous_system(2)|skin(1)	6	Melanoma(164;0.059)					TCATGATGGTGAAGGGACCCA	0.557000													20	27					0	0	0.00121646	0	0
OR6V1	346517	broad.mit.edu	37	7	142749551	142749551	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr7:142749551G>A	uc011ksv.1	+	1	114	c.114G>A	c.(112-114)ATG>ATA	p.M38I		NM_001001667	NP_001001667	Q8N148	OR6V1_HUMAN	olfactory receptor, family 6, subfamily V,	38	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	Melanoma(164;0.059)					TCGCCTTCATGGGAAACACCA	0.502000													18	232					0	0	0.000566183	0	0
FAM131B	9715	broad.mit.edu	37	7	143053789	143053789	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr7:143053789C>T	uc003wct.2	-	6	2559	c.853G>A	c.(853-855)GAA>AAA	p.E285K	FAM131B_uc010loz.2_Missense_Mutation_p.E253K|FAM131B_uc003wcu.3_Missense_Mutation_p.E285K|FAM131B_uc010lpa.2_Missense_Mutation_p.E313K	NM_014690	NP_055505	Q86XD5	F131B_HUMAN	hypothetical protein LOC9715 isoform b	285	Poly-Glu.			E -> G (in Ref. 6; AAH45611).							0	Melanoma(164;0.205)					GCATCCTCTTCCTCCTCAGGT	0.627000													8	157					0	0	0.000442599	0	0
DLGAP2	9228	broad.mit.edu	37	8	1639759	1639759	+	Silent	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr8:1639759C>T	uc003wpl.2	+	10	2620	c.2523C>T	c.(2521-2523)TTC>TTT	p.F841F	DLGAP2_uc003wpm.2_Silent_p.F827F	NM_004745	NP_004736	Q9P1A6	DLGP2_HUMAN	discs large-associated protein 2	920					neuron-neuron synaptic transmission	cell junction|neurofilament|postsynaptic density|postsynaptic membrane	protein binding				0		Ovarian(12;0.0271)|Hepatocellular(245;0.0838)|Colorectal(14;0.0846)		BRCA - Breast invasive adenocarcinoma(11;0.000169)|READ - Rectum adenocarcinoma(644;0.171)		CCCAGAAATTCCAGCAGTTTT	0.393000													7	26					0	0	0.000274275	0	0
USP17L2	377630	broad.mit.edu	37	8	11995065	11995065	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr8:11995065C>G	uc003wvc.1	-	1	1205	c.1205G>C	c.(1204-1206)CGA>CCA	p.R402P	FAM66D_uc011kxp.1_Intron|FAM66D_uc011kxo.1_Intron	NM_201402	NP_958804	Q6R6M4	U17L2_HUMAN	deubiquitinating enzyme 3	402					apoptosis|cell cycle|G2/M transition checkpoint|mitotic cell cycle G1/S transition checkpoint|protein deubiquitination|ubiquitin-dependent protein catabolic process	nucleus	ubiquitin thiolesterase activity|ubiquitin-specific protease activity			skin(2)|upper_aerodigestive_tract(1)	3						TTGCGTTGCTCGCCTGTCTGT	0.562000													6	61					0	0	0.00198382	0	0
BMP1	649	broad.mit.edu	37	8	22066984	22066984	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr8:22066984G>A	uc003xbg.2	+	19	2846	c.2602G>A	c.(2602-2604)GTG>ATG	p.V868M	BMP1_uc011kzc.1_Missense_Mutation_p.V617M|BMP1_uc003xbh.2_RNA|BMP1_uc003xbi.2_RNA	NM_006129	NP_006120	P13497	BMP1_HUMAN	bone morphogenetic protein 1 isoform 3	868	CUB 5.				cartilage condensation|cell differentiation|lipid metabolic process|lipoprotein metabolic process|ossification|positive regulation of cartilage development|proteolysis	extracellular space	calcium ion binding|cytokine activity|growth factor activity|metalloendopeptidase activity|zinc ion binding			ovary(2)|breast(1)	3				Colorectal(74;0.00229)|COAD - Colon adenocarcinoma(73;0.0661)|READ - Rectum adenocarcinoma(644;0.11)		ACGGGCAGACGTGAAGACCAA	0.632000													10	62					0	0	0.000978159	0	0
TRIM55	84675	broad.mit.edu	37	8	67062108	67062108	+	Silent	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr8:67062108C>T	uc003xvv.2	+	5	1058	c.832C>T	c.(832-834)CTG>TTG	p.L278L	TRIM55_uc003xvu.2_Silent_p.L278L|TRIM55_uc003xvw.2_Silent_p.L278L|TRIM55_uc003xvx.2_Intron	NM_184085	NP_908973	Q9BYV6	TRI55_HUMAN	tripartite motif-containing 55 isoform 1	278	COS.					cytoplasm|microtubule|nucleus	signal transducer activity|zinc ion binding			skin(3)|ovary(1)|central_nervous_system(1)	5		Lung NSC(129;0.138)|all_lung(136;0.221)	Epithelial(68;0.0136)|all cancers(69;0.0582)|BRCA - Breast invasive adenocarcinoma(89;0.0628)|OV - Ovarian serous cystadenocarcinoma(28;0.0904)			GGCAGTGTTTCTGCAGGTAAG	0.368000													12	46					0	0	0.000978159	0	0
LRRC67	286187	broad.mit.edu	37	8	67900707	67900707	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr8:67900707C>T	uc003xxc.2	-	6	743	c.598G>A	c.(598-600)GAT>AAT	p.D200N		NM_001013626	NP_001013648	Q7Z4L9	LRC67_HUMAN	leucine rich repeat containing 67	200											0						CCATTTAGATCAATTTTCCAC	0.308000													7	26					0	0	0.00198382	0	0
SLCO5A1	81796	broad.mit.edu	37	8	70585448	70585448	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr8:70585448G>A	uc003xyl.2	-	10	2910	c.2203C>T	c.(2203-2205)CGT>TGT	p.R735C	SLCO5A1_uc010lzb.2_Missense_Mutation_p.R680C|SLCO5A1_uc011lfa.1_RNA|SLCO5A1_uc003xyk.2_3'UTR	NM_030958	NP_112220	Q9H2Y9	SO5A1_HUMAN	solute carrier organic anion transporter family,	735	Extracellular (Potential).					integral to membrane|plasma membrane	transporter activity			ovary(3)|upper_aerodigestive_tract(1)	4	Breast(64;0.0654)		Epithelial(68;0.0141)|OV - Ovarian serous cystadenocarcinoma(28;0.0315)|all cancers(69;0.0594)			TACACAAAACGAAACGACGTC	0.463000													71	136					0	0	0.000781405	0	0
FBXO43	286151	broad.mit.edu	37	8	101153270	101153270	+	Silent	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr8:101153270G>A	uc003yjd.2	-	2	1925	c.1212C>T	c.(1210-1212)CAC>CAT	p.H404H	FBXO43_uc003yje.2_Silent_p.H370H|FBXO43_uc010mbp.1_Silent_p.H404H	NM_001029860	NP_001025031	Q4G163	FBX43_HUMAN	F-box protein 43 isoform b	404					meiosis		zinc ion binding			kidney(1)|skin(1)	2	all_cancers(14;0.000139)|all_epithelial(15;2.84e-07)|Lung NSC(17;0.000274)|all_lung(17;0.000798)		Epithelial(11;1.17e-09)|all cancers(13;1.34e-07)|OV - Ovarian serous cystadenocarcinoma(57;3.82e-05)|STAD - Stomach adenocarcinoma(118;0.0957)			CAGAGTCAGGGTGGACAATCT	0.468000													20	134					0	0	0.00229938	0	0
HSF1	3297	broad.mit.edu	37	8	145537689	145537689	+	Silent	SNP	C	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr8:145537689C>A	uc003zbt.3	+	12	1526	c.1356C>A	c.(1354-1356)CCC>CCA	p.P452P	HSF1_uc003zbu.3_RNA	NM_005526	NP_005517	Q00613	HSF1_HUMAN	heat shock transcription factor 1	452	Transactivation domain.					cytoplasm	protein binding|sequence-specific DNA binding transcription factor activity				0	all_cancers(97;6.64e-12)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;3.94e-40)|Epithelial(56;1.12e-39)|all cancers(56;9.11e-35)|BRCA - Breast invasive adenocarcinoma(115;0.0547)|Colorectal(110;0.055)			CCAGGCCTCCCGAGGCAGAGA	0.692000													4	33					0.00116845	0.00503737	0.00116845	1	0
INSL6	11172	broad.mit.edu	37	9	5185451	5185451	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr9:5185451C>T	uc003zix.2	-	1	168	c.152G>A	c.(151-153)AGC>AAC	p.S51N		NM_007179	NP_009110	Q9Y581	INSL6_HUMAN	insulin-like 6 precursor	51						extracellular region	hormone activity				0	all_hematologic(13;0.137)	Breast(48;0.147)|Acute lymphoblastic leukemia(23;0.158)		GBM - Glioblastoma multiforme(50;0.0128)|Lung(218;0.145)		ACGGAACTGGCTCCAGTTGGC	0.542000													8	78					0	0	0.000274275	0	0
IFNA5	3442	broad.mit.edu	37	9	21305122	21305122	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr9:21305122C>T	uc011lnh.1	-	1	134	c.134G>A	c.(133-135)GGA>GAA	p.G45E		NM_002169	NP_002160	P01569	IFNA5_HUMAN	interferon, alpha 5 precursor	45					blood coagulation|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|cytokine receptor binding			ovary(1)	1				Lung(24;2.34e-24)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)		AGAGATTCTTCCCATTTGTGC	0.493000													14	73					0	0	0.00185496	0	0
CDKN2A	1029	broad.mit.edu	37	9	21971096	21971097	+	Missense_Mutation	DNP	CC	TT	TT	rs121913384		TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr9:21971096_21971097CC>TT	uc003zpk.2	-	2	473_474	c.261_262GG>AA	c.(259-264)CGGGAG>CGAAAG	p.E88K	MTAP_uc003zpi.1_Intron|CDKN2A_uc003zpj.2_3'UTR|CDKN2A_uc010miu.2_RNA|CDKN2A_uc003zpl.2_Missense_Mutation_p.G143K	NM_000077	NP_000068	P42771	CD2A1_HUMAN	cyclin-dependent kinase inhibitor 2A isoform 1	88	ANK 3.		E -> D (in a biliary tract tumor).		cell cycle arrest|cell cycle checkpoint|G1 phase of mitotic cell cycle|G1/S transition of mitotic cell cycle|induction of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of cell-matrix adhesion|negative regulation of cyclin-dependent protein kinase activity|negative regulation of NF-kappaB transcription factor activity|positive regulation of macrophage apoptosis|positive regulation of smooth muscle cell apoptosis|Ras protein signal transduction|replicative senescence	cytosol|nucleus	cyclin-dependent protein kinase inhibitor activity|NF-kappaB binding|protein binding|protein binding|protein kinase binding	p.0?(1112)|p.?(13)|p.E88*(13)|p.E88E(6)|p.E88K(3)|p.H83fs*2(2)|p.E88D(2)|p.E88A(1)|p.E88G(1)|p.D84_F90del(1)|p.V82_E88del(1)|p.V82_G89>G(1)|p.E61_L94del(1)|p.R137fs*48(1)|p.A68fs*3(1)|p.E88V(1)|p.E87K(1)		haematopoietic_and_lymphoid_tissue(647)|skin(419)|upper_aerodigestive_tract(414)|central_nervous_system(381)|lung(325)|pancreas(244)|oesophagus(230)|urinary_tract(225)|pleura(94)|liver(91)|soft_tissue(79)|bone(77)|ovary(76)|biliary_tract(71)|stomach(46)|breast(46)|kidney(39)|NS(28)|thyroid(24)|cervix(23)|meninges(18)|genital_tract(15)|endometrium(13)|prostate(11)|autonomic_ganglia(10)|salivary_gland(10)|large_intestine(9)|adrenal_gland(6)|eye(4)|vulva(2)|small_intestine(1)	3678		all_cancers(5;0)|Acute lymphoblastic leukemia(3;0)|all_hematologic(3;0)|all_epithelial(2;2.37e-290)|Lung NSC(2;1.26e-139)|all_lung(2;4.48e-131)|Glioma(2;3.26e-60)|all_neural(2;2.1e-52)|Renal(3;1.07e-46)|Esophageal squamous(3;3.83e-46)|Melanoma(2;2.74e-34)|Breast(3;1.14e-11)|Ovarian(3;0.000128)|Hepatocellular(5;0.00162)|Colorectal(97;0.172)		all cancers(2;0)|GBM - Glioblastoma multiforme(3;0)|Lung(2;4.07e-74)|Epithelial(2;1.08e-61)|LUSC - Lung squamous cell carcinoma(2;3.82e-48)|LUAD - Lung adenocarcinoma(2;4.56e-26)|OV - Ovarian serous cystadenocarcinoma(39;7.64e-10)|BRCA - Breast invasive adenocarcinoma(2;5.01e-09)|STAD - Stomach adenocarcinoma(4;4.63e-07)|Kidney(2;5.79e-07)|KIRC - Kidney renal clear cell carcinoma(2;7.27e-07)|COAD - Colon adenocarcinoma(8;5.15e-05)		AGGAAGCCCTCCCGGGCAGCGT	0.752000	E88*(CAL33_UPPER_AERODIGESTIVE_TRACT)	17							Uveal_Melanoma_Familial|Familial_Malignant_Melanoma_and_Tumors_of_the_Nervous_System|Hereditary_Melanoma	HNSCC(2;<9.43e_08)|TSP Lung(5;3.83e-07)			14	94					0	0	6.4e-05	0	0
AQP7	364	broad.mit.edu	37	9	33395117	33395117	+	Silent	SNP	G	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr9:33395117G>T	uc003zst.2	-	3	275	c.103C>A	c.(103-105)CGA>AGA	p.R35R	SUGT1P1_uc010mjq.1_Intron|AQP7_uc003zsu.1_Intron|AQP7_uc010mjs.2_5'Flank|AQP7_uc010mjt.2_5'UTR|AQP7_uc011lnx.1_Silent_p.R35R|AQP7_uc011lny.1_Silent_p.R34R|AQP7_uc003zss.3_5'UTR|AQP7_uc011lnz.1_5'UTR|AQP7_uc011loa.1_5'UTR	NM_001170	NP_001161	O14520	AQP7_HUMAN	aquaporin 7	35	Cytoplasmic (Potential).				excretion|generation of precursor metabolites and energy	cell-cell junction|cytoplasm|integral to plasma membrane	glycerol channel activity|water channel activity				0			LUSC - Lung squamous cell carcinoma(29;0.00788)	GBM - Glioblastoma multiforme(74;0.191)		AGGAACTCTCGCACCATCTTC	0.587000													4	39					1.23904e-05	5.38468e-05	0.000602214	1	0
ALDH1B1	219	broad.mit.edu	37	9	38395820	38395820	+	Silent	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr9:38395820C>T	uc004aay.2	+	2	187	c.75C>T	c.(73-75)CTC>CTT	p.L25L		NM_000692	NP_000683	P30837	AL1B1_HUMAN	aldehyde dehydrogenase 1B1 precursor	25					carbohydrate metabolic process	mitochondrial matrix|nucleus	aldehyde dehydrogenase (NAD) activity			skin(1)	1				GBM - Glioblastoma multiforme(29;0.043)|Lung(182;0.115)	NADH(DB00157)	CAGCAGCCCTCCCAAGCCCCA	0.592000													9	39					0	0	0.000442599	0	0
LOC442421	442421	broad.mit.edu	37	9	66499794	66499794	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr9:66499794C>T	uc004aee.1	+	1	604	c.604C>T	c.(604-606)CGC>TGC	p.R202C	LOC442421_uc004aed.1_RNA					Homo sapiens hypothetical LOC442421, mRNA (cDNA clone IMAGE:40031134).												0						GTGCAAGTCGCGCAAGGAGCA	0.587000													6	43					0	0	0.000442599	0	0
PRUNE2	158471	broad.mit.edu	37	9	79465507	79465507	+	Silent	SNP	C	T	T	rs142442874	by1000genomes	TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr9:79465507C>T	uc010mpk.2	-	3	340	c.216G>A	c.(214-216)ACG>ACA	p.T72T	PRUNE2_uc004akn.2_Silent_p.T72T	NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	72					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						AAATAAACCTCGTCTCGGTGA	0.388000													15	135					0	0	0.000958276	0	0
DIRAS2	54769	broad.mit.edu	37	9	93375794	93375794	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr9:93375794C>T	uc004aqx.1	-	2	427	c.316G>A	c.(316-318)GAG>AAG	p.E106K		NM_017594	NP_060064	Q96HU8	DIRA2_HUMAN	Di-Ras2	106					small GTPase mediated signal transduction	intracellular|plasma membrane	GTP binding|GTPase activity				0						CCTTTGATCTCGCAGATTTGT	0.592000													8	84					0	0	0.000274275	0	0
NOL8	55035	broad.mit.edu	37	9	95077144	95077144	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr9:95077144G>A	uc004arv.2	-	7	2100	c.1763C>T	c.(1762-1764)TCC>TTC	p.S588F	NOL8_uc010mqw.2_RNA|NOL8_uc004arw.2_Intron|NOL8_uc011ltw.1_Missense_Mutation_p.S520F	NM_017948	NP_060418	Q76FK4	NOL8_HUMAN	nucleolar protein 8	588					DNA replication|positive regulation of cell growth	nucleolus	nucleotide binding|protein binding|RNA binding			ovary(1)	1						GTCTTTCAAGGATTTTTTCAT	0.378000													4	25					0	0	0.00024832	0	0
CYLC2	1539	broad.mit.edu	37	9	105767288	105767288	+	Silent	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr9:105767288G>A	uc004bbs.2	+	5	445	c.375G>A	c.(373-375)AAG>AAA	p.K125K		NM_001340	NP_001331	Q14093	CYLC2_HUMAN	cylicin 2	125	31 X 3 AA repeats of K-K-X.				cell differentiation|multicellular organismal development|spermatogenesis	cytoskeletal calyx	structural constituent of cytoskeleton			skin(1)	1		all_hematologic(171;0.125)				CAACACAGAAGGACACAACAG	0.194000													11	48					0	0	0.00136819	0	0
OR13C4	138804	broad.mit.edu	37	9	107289152	107289152	+	Silent	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr9:107289152G>A	uc011lvn.1	-	1	339	c.339C>T	c.(337-339)TTC>TTT	p.F113F		NM_001001919	NP_001001919	Q8NGS5	O13C4_HUMAN	olfactory receptor, family 13, subfamily C,	113	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TGCCAAGGAGGAAACATTCTG	0.443000													9	79					0	0	0.000442599	0	0
OR13C3	138803	broad.mit.edu	37	9	107298289	107298289	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr9:107298289G>A	uc004bcb.1	-	1	806	c.806C>T	c.(805-807)TCC>TTC	p.S269F		NM_001001961	NP_001001961	Q8NGS6	O13C3_HUMAN	olfactory receptor, family 13, subfamily C,	269	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1						TGAGCACGTGGAAAATGCCTT	0.428000													10	64					0	0	0.00136819	0	0
PAPPA	5069	broad.mit.edu	37	9	119106879	119106879	+	Silent	SNP	T	G	G			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr9:119106879T>G	uc004bjn.2	+	14	4050	c.3669T>G	c.(3667-3669)GCT>GCG	p.A1223A	PAPPA_uc011lxq.1_Silent_p.A598A	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	1223	Sushi 1.				cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						TGGAGAATGCTTCTCTCAATT	0.572000													13	81					0	0	0.00244969	0	0
DBC1	1620	broad.mit.edu	37	9	121929768	121929768	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr9:121929768G>A	uc004bkc.2	-	8	2336	c.1880C>T	c.(1879-1881)ACC>ATC	p.T627I		NM_014618	NP_055433	O60477	DBC1_HUMAN	deleted in bladder cancer 1 precursor	627					cell cycle arrest|cell death	cytoplasm	protein binding			skin(3)|ovary(2)|central_nervous_system(2)|large_intestine(1)	8						TCGCAGTAGGGTAGGTAGCCG	0.532000													18	100					0	0	0.00074312	0	0
OR1L8	138881	broad.mit.edu	37	9	125330591	125330591	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr9:125330591G>A	uc004bmp.1	-	1	166	c.166C>T	c.(166-168)CTT>TTT	p.L56F		NM_001004454	NP_001004454	Q8NGR8	OR1L8_HUMAN	olfactory receptor, family 1, subfamily L,	56	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.L56V(1)		ovary(2)|central_nervous_system(1)	3						GGGGTCTGAAGATGGGGGTTG	0.458000													7	83					0	0	0.000157383	0	0
OR1L8	138881	broad.mit.edu	37	9	125330724	125330724	+	Silent	SNP	G	A	A	rs41305505		TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr9:125330724G>A	uc004bmp.1	-	1	33	c.33C>T	c.(31-33)TCC>TCT	p.S11S		NM_001004454	NP_001004454	Q8NGR8	OR1L8_HUMAN	olfactory receptor, family 1, subfamily L,	11	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3						GGATAAACTCGGAGACACTGC	0.458000													4	37					0	0	0.00024832	0	0
OR1L3	26735	broad.mit.edu	37	9	125437530	125437530	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr9:125437530G>A	uc011lzb.1	+	1	122	c.122G>A	c.(121-123)GGA>GAA	p.G41E		NM_001005234	NP_001005234	Q8NH93	OR1L3_HUMAN	olfactory receptor, family 1, subfamily L,	41	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						ACTTTGATGGGAAATCTGCTC	0.428000													19	94					0	0	0.00047179	0	0
OR1K1	392392	broad.mit.edu	37	9	125563032	125563032	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr9:125563032C>T	uc011lze.1	+	1	631	c.631C>T	c.(631-633)CCC>TCC	p.P211S		NM_080859	NP_543135	Q8NGR3	OR1K1_HUMAN	olfactory receptor, family 1, subfamily K,	211	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						GGTGGTCACTCCCTTCCTGCT	0.637000													6	49					0	0	0.00116845	0	0
DENND1A	57706	broad.mit.edu	37	9	126520023	126520023	+	Silent	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr9:126520023G>A	uc004bnz.1	-	5	494	c.261C>T	c.(259-261)TGC>TGT	p.C87C	DENND1A_uc004bny.1_5'UTR|DENND1A_uc011lzm.1_Silent_p.C55C|DENND1A_uc004boa.1_Silent_p.C87C|DENND1A_uc004bob.1_Silent_p.C57C|DENND1A_uc004boc.2_Silent_p.C55C	NM_020946	NP_065997	Q8TEH3	DEN1A_HUMAN	DENN/MADD domain containing 1A isoform 1	87	UDENN.					cell junction|clathrin coated vesicle membrane|presynaptic membrane	guanyl-nucleotide exchange factor activity			ovary(2)	2						AAGATAAGCGGCAGAACCCGA	0.488000													6	35					0	0	0.00116845	0	0
FUBP3	8939	broad.mit.edu	37	9	133495798	133495798	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr9:133495798G>A	uc004bzr.1	+	9	832	c.724G>A	c.(724-726)GGT>AGT	p.G242S	FUBP3_uc010mzd.1_Missense_Mutation_p.G182S|FUBP3_uc004bzs.1_Missense_Mutation_p.G155S	NM_003934	NP_003925	Q96I24	FUBP3_HUMAN	far upstream element (FUSE) binding protein 3	242					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|RNA binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(145;0.000279)		TGACTTTCGGGGTGTACGCGG	0.408000													16	83					0	0	0.000422831	0	0
CYBB	1536	broad.mit.edu	37	X	37670055	37670055	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chrX:37670055G>A	uc004ddr.2	+	13	1659	c.1598G>A	c.(1597-1599)GGA>GAA	p.G533E	CYBB_uc011mkf.1_Missense_Mutation_p.G501E|CYBB_uc011mkg.1_Missense_Mutation_p.G266E	NM_000397	NP_000388	P04839	CY24B_HUMAN	cytochrome b-245 beta polypeptide	533	Cytoplasmic (Potential).				electron transport chain|inflammatory response|innate immune response|respiratory burst|superoxide anion generation	NADPH oxidase complex	electron carrier activity|flavin adenine dinucleotide binding|heme binding|protein heterodimerization activity|superoxide-generating NADPH oxidase activity|voltage-gated ion channel activity			central_nervous_system(1)|skin(1)	2						ACCAGAATAGGAGTTTTCCTC	0.438000													5	13					0	0	0.00198382	0	0
RGN	9104	broad.mit.edu	37	X	46951461	46951461	+	Silent	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chrX:46951461G>A	uc004dgz.1	+	7	1665	c.696G>A	c.(694-696)GGG>GGA	p.G232G	RGN_uc004dha.1_Silent_p.G232G|RGN_uc010nho.1_Silent_p.G179G|RGN_uc010nhp.1_Silent_p.G160G	NM_152869	NP_690608	Q15493	RGN_HUMAN	regucalcin	232					cellular calcium ion homeostasis|positive regulation of ATPase activity|regulation of calcium-mediated signaling	cytoplasm|nucleus	calcium ion binding|enzyme regulator activity|gluconolactonase activity|zinc ion binding				0						GTGGTCTAGGGAAAAGACTTC	0.398000													4	9					0	0	0.00024832	0	0
RAB41	347517	broad.mit.edu	37	X	69502086	69502086	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chrX:69502086G>A	uc004dyc.2	+	1	19	c.19G>A	c.(19-21)GAC>AAC	p.D7N	RAB41_uc010nkv.2_5'UTR	NM_001032726	NP_001027898	Q5JT25	RAB41_HUMAN	RAB41, member RAS oncogene family	7					protein transport|small GTPase mediated signal transduction		GTP binding			ovary(2)|breast(2)	4						CTTTGGTCACGACGAGGCCTG	0.562000													6	17					0	0	0.00198382	0	0
P2RY10	27334	broad.mit.edu	37	X	78216281	78216281	+	Silent	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chrX:78216281C>T	uc004ede.2	+	4	633	c.264C>T	c.(262-264)CCC>CCT	p.P88P	P2RY10_uc004edf.2_Silent_p.P88P	NM_014499	NP_055314	O00398	P2Y10_HUMAN	G-protein coupled purinergic receptor P2Y10	88	Helical; Name=2; (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(2)|lung(2)|breast(1)	5						TATCTTTACCCCTCCGGATTT	0.458000													22	43					0	0	0.00229938	0	0
SLC6A14	11254	broad.mit.edu	37	X	115577962	115577962	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chrX:115577962G>A	uc004eqi.2	+	7	949	c.845G>A	c.(844-846)CGA>CAA	p.R282Q	SLC6A14_uc011mtm.1_RNA	NM_007231	NP_009162	Q9UN76	S6A14_HUMAN	solute carrier family 6 (amino acid	282					cellular amino acid metabolic process|response to toxin	integral to membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			ovary(2)|pancreas(1)	3					L-Proline(DB00172)	CTGTTAGTACGAGGTGCAACT	0.363000													27	41					0	0	0.00178596	0	0
ZNF280C	55609	broad.mit.edu	37	X	129364502	129364502	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chrX:129364502A>G	uc004evm.2	-	9	1125	c.971T>C	c.(970-972)GTT>GCT	p.V324A	ZNF280C_uc010nrf.1_Missense_Mutation_p.V324A	NM_017666	NP_060136	Q8ND82	Z280C_HUMAN	zinc finger protein 280C	324	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)	3						ATTTTTAAGAACTTTCGAGCA	0.308000													21	25					0	0	0.00121646	0	0
GPR112	139378	broad.mit.edu	37	X	135428902	135428902	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chrX:135428902C>T	uc004ezu.1	+	6	3328	c.3037C>T	c.(3037-3039)CAT>TAT	p.H1013Y	GPR112_uc010nsb.1_Missense_Mutation_p.H808Y|GPR112_uc010nsc.1_Missense_Mutation_p.H780Y	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	1013	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					GCCTGTTACTCATATGTTCTC	0.507000													18	35					0	0	0.00152264	0	0
FGF13	2258	broad.mit.edu	37	X	137785196	137785196	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chrX:137785196G>A	uc004fam.2	-	3	1014	c.352C>T	c.(352-354)CAA>TAA	p.Q118*	FGF13_uc004fan.2_Nonsense_Mutation_p.Q65*|FGF13_uc011mwi.1_Nonsense_Mutation_p.Q99*|FGF13_uc004faq.2_Nonsense_Mutation_p.Q128*|FGF13_uc004far.2_Nonsense_Mutation_p.Q99*|FGF13_uc011mwj.1_Nonsense_Mutation_p.Q128*|FGF13_uc011mwk.1_Nonsense_Mutation_p.Q72*	NM_004114	NP_004105	Q92913	FGF13_HUMAN	fibroblast growth factor 13 isoform 1	118					cell-cell signaling|MAPKKK cascade|nervous system development	cytoplasm|nucleus	growth factor activity|protein kinase activator activity			ovary(1)|large_intestine(1)|breast(1)	3	Acute lymphoblastic leukemia(192;0.000127)					AGCTTGGTTTGAACTCCTTGG	0.398000													23	36					0	0	0.000720815	0	0
DHX9	1660	broad.mit.edu	37	1	182844081	182844083	+	In_Frame_Del	DEL	GAT	-	-			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr1:182844081_182844083delGAT	uc001gpr.2	+	16	1970_1972	c.1807_1809delGAT	c.(1807-1809)GATdel	p.D605del	DHX9_uc001gps.2_In_Frame_Del_p.D391del	NM_001357	NP_001348	Q08211	DHX9_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 9	605					CRD-mediated mRNA stabilization|nuclear mRNA splicing, via spliceosome	centrosome|CRD-mediated mRNA stability complex|nucleolus|nucleoplasm|ribonucleoprotein complex	ATP binding|ATP-dependent DNA helicase activity|ATP-dependent RNA helicase activity|DNA binding|double-stranded RNA binding|protein binding			ovary(2)	2						tggtggtgaggatgatgatgTAA	0.291													10	61	---	---	---	---					
RNF146	81847	broad.mit.edu	37	6	127608556	127608558	+	In_Frame_Del	DEL	AGA	-	-			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr6:127608556_127608558delAGA	uc003qav.2	+	3	957_959	c.798_800delAGA	c.(796-801)GGAGAA>GGA	p.E268del	RNF146_uc003qat.2_In_Frame_Del_p.E267del|RNF146_uc003qau.2_In_Frame_Del_p.E267del|RNF146_uc003qaw.2_In_Frame_Del_p.E267del	NM_030963	NP_112225	Q9NTX7	RN146_HUMAN	ring finger protein 146	268					positive regulation of canonical Wnt receptor signaling pathway|protein autoubiquitination|protein K48-linked ubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|Wnt receptor signaling pathway	cytosol	poly-ADP-D-ribose binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			kidney(1)	1				GBM - Glioblastoma multiforme(226;0.0407)|all cancers(137;0.2)		GGGGAGAAGGAGAAGAAGATCAT	0.463													8	44	---	---	---	---					
PEX1	5189	broad.mit.edu	37	7	92146721	92146721	+	Frame_Shift_Del	DEL	T	-	-			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr7:92146721delT	uc003uly.2	-	5	1204	c.1108delA	c.(1108-1110)ATTfs	p.I370fs	PEX1_uc011khr.1_Frame_Shift_Del_p.I162fs|PEX1_uc010ley.2_Frame_Shift_Del_p.I370fs|PEX1_uc011khs.1_Intron|PEX1_uc011kht.1_RNA	NM_000466	NP_000457	O43933	PEX1_HUMAN	peroxin1	370					microtubule-based peroxisome localization|protein import into peroxisome matrix	cytosol|nucleus|peroxisomal membrane	ATP binding|ATPase activity, coupled|protein C-terminus binding|protein complex binding			ovary(1)|central_nervous_system(1)	2	all_cancers(62;9.35e-11)|all_epithelial(64;4.59e-10)|Breast(17;0.00201)|all_lung(186;0.0438)|Lung NSC(181;0.0592)	Breast(660;0.000932)|all_neural(109;0.00391)|Myeloproliferative disorder(862;0.0122)|Ovarian(593;0.023)|Medulloblastoma(109;0.123)	GBM - Glioblastoma multiforme(5;4.06e-06)|STAD - Stomach adenocarcinoma(4;4.51e-05)|all cancers(6;5.32e-05)|LUSC - Lung squamous cell carcinoma(200;0.225)|Lung(22;0.23)			TCTGACCTAATTTTTTTTTGA	0.353													7	209	---	---	---	---					
RANBP6	26953	broad.mit.edu	37	9	6012690	6012690	+	Frame_Shift_Del	DEL	T	-	-			TCGA-D3-A3CB-06A-11D-A196-08	TCGA-D3-A3CB-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	22328cd1-91d2-422e-8fd8-e23f2d6534d1	468ac982-9b6d-43d1-8af4-df6961fd9ca7	g.chr9:6012690delT	uc003zjr.2	-	1	2929	c.2918delA	c.(2917-2919)AATfs	p.N973fs	RANBP6_uc011lmf.1_Frame_Shift_Del_p.N621fs|RANBP6_uc003zjs.2_Frame_Shift_Del_p.N561fs	NM_012416	NP_036548	O60518	RNBP6_HUMAN	RAN binding protein 6	973	HEAT 7.				protein transport	cytoplasm|nucleus	binding			ovary(3)	3		Acute lymphoblastic leukemia(23;0.158)		GBM - Glioblastoma multiforme(50;0.00522)|Lung(218;0.101)		AGCAATGACATTTTTTTTGGT	0.358													7	84	---	---	---	---					
