Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
GABRD	2563	broad.mit.edu	37	1	1961584	1961584	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CF-06A-11D-A196-08	TCGA-D3-A3CF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4de17e47-b1e8-458e-a8f1-be1e5d095f17	5f9d120e-e36f-45c2-8cbf-d11e68d80b2a	g.chr1:1961584C>T	uc001aip.2	+	9	1317	c.1222C>T	c.(1222-1224)CGC>TGC	p.R408C		NM_000815	NP_000806	O14764	GBRD_HUMAN	gamma-aminobutyric acid (GABA) A receptor, delta	408	Cytoplasmic (Probable).					cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3	all_cancers(77;0.000708)|all_epithelial(69;0.000943)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;2.7e-19)|all_lung(118;1.22e-08)|Lung NSC(185;1.24e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Medulloblastoma(700;0.123)|Lung SC(97;0.128)		Epithelial(90;2.19e-38)|OV - Ovarian serous cystadenocarcinoma(86;3.17e-24)|GBM - Glioblastoma multiforme(42;9.56e-08)|Colorectal(212;4.12e-05)|COAD - Colon adenocarcinoma(227;0.000194)|Kidney(185;0.00231)|BRCA - Breast invasive adenocarcinoma(365;0.00441)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0344)|Lung(427;0.2)		GGGGGCAGCCCGCTCAGGAGG	0.701000													6	45					0	0	0.00116845	0	0
PLOD1	5351	broad.mit.edu	37	1	12025608	12025608	+	Silent	SNP	C	T	T			TCGA-D3-A3CF-06A-11D-A196-08	TCGA-D3-A3CF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4de17e47-b1e8-458e-a8f1-be1e5d095f17	5f9d120e-e36f-45c2-8cbf-d11e68d80b2a	g.chr1:12025608C>T	uc001atm.2	+	14	1633	c.1542C>T	c.(1540-1542)ACC>ACT	p.T514T	PLOD1_uc010obb.1_Silent_p.T561T	NM_000302	NP_000293	Q02809	PLOD1_HUMAN	lysyl hydroxylase 1 precursor	514					epidermis development|hydroxylysine biosynthetic process|protein modification process|response to hypoxia	rough endoplasmic reticulum membrane	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-lysine 5-dioxygenase activity|protein homodimerization activity			ovary(2)|breast(1)	3	Ovarian(185;0.249)	Lung NSC(185;8.69e-05)|all_lung(284;9.87e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.06e-06)|COAD - Colon adenocarcinoma(227;0.000273)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.000809)|KIRC - Kidney renal clear cell carcinoma(229;0.00267)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0649)	Minoxidil(DB00350)|Succinic acid(DB00139)|Vitamin C(DB00126)	ACCGCACCACCCACCTGCACA	0.562000													14	67					0	0	0.000308642	0	0
VPS13D	55187	broad.mit.edu	37	1	12433805	12433805	+	Silent	SNP	C	A	A			TCGA-D3-A3CF-06A-11D-A196-08	TCGA-D3-A3CF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4de17e47-b1e8-458e-a8f1-be1e5d095f17	5f9d120e-e36f-45c2-8cbf-d11e68d80b2a	g.chr1:12433805C>A	uc001atv.2	+	55	10950	c.10809C>A	c.(10807-10809)GGC>GGA	p.G3603G	VPS13D_uc001atw.2_Silent_p.G3578G|VPS13D_uc001atx.2_Silent_p.G2790G|VPS13D_uc009vnl.2_RNA	NM_015378	NP_056193	Q5THJ4	VP13D_HUMAN	vacuolar protein sorting 13D isoform 1	3602					protein localization					ovary(4)|pancreas(1)	5	Ovarian(185;0.249)	Lung NSC(185;4.08e-05)|all_lung(284;4.55e-05)|Renal(390;0.000147)|Colorectal(325;0.00058)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0327)|Colorectal(212;4.63e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000289)|COAD - Colon adenocarcinoma(227;0.000801)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0476)|Lung(427;0.209)		TAAATTCTAGCTTGCAGGAGG	0.303000													6	36					0.00116845	0.0075949	0.00116845	1	0
ESPNP	284729	broad.mit.edu	37	1	17023110	17023110	+	Missense_Mutation	SNP	G	A	A	rs11260887	by1000genomes	TCGA-D3-A3CF-06A-11D-A196-08	TCGA-D3-A3CF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4de17e47-b1e8-458e-a8f1-be1e5d095f17	5f9d120e-e36f-45c2-8cbf-d11e68d80b2a	g.chr1:17023110G>A	uc001azn.1	-	10	1754	c.1640C>T	c.(1639-1641)CCG>CTG	p.P547L		NR_026567				RecName: Full=Espin; AltName: Full=Ectoplasmic specialization protein; AltName: Full=Autosomal recessive deafness type 36 protein;												0						GTTGAGCAGCGGCTGAAACCC	0.687000													4	11					0	0	0.00116845	0	0
FAM151A	338094	broad.mit.edu	37	1	55076151	55076151	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A3CF-06A-11D-A196-08	TCGA-D3-A3CF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4de17e47-b1e8-458e-a8f1-be1e5d095f17	5f9d120e-e36f-45c2-8cbf-d11e68d80b2a	g.chr1:55076151G>C	uc001cxn.2	-	7	1150	c.1018C>G	c.(1018-1020)CTG>GTG	p.L340V	ACOT11_uc001cxm.1_Intron	NM_176782	NP_788954	Q8WW52	F151A_HUMAN	hypothetical protein LOC338094	340						integral to membrane					0						TCCACATTCAGACCGTCATCC	0.592000													4	48					0	0	0.00116845	0	0
HAO2	51179	broad.mit.edu	37	1	119925606	119925606	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A3CF-06A-11D-A196-08	TCGA-D3-A3CF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4de17e47-b1e8-458e-a8f1-be1e5d095f17	5f9d120e-e36f-45c2-8cbf-d11e68d80b2a	g.chr1:119925606A>T	uc001ehq.1	+	4	552	c.200A>T	c.(199-201)GAG>GTG	p.E67V	HAO2_uc001ehr.1_Missense_Mutation_p.E67V	NM_001005783	NP_001005783	Q9NYQ3	HAOX2_HUMAN	hydroxyacid oxidase 2	67	FMN hydroxy acid dehydrogenase.				fatty acid alpha-oxidation	peroxisome	(S)-2-hydroxy-acid oxidase activity			ovary(2)|skin(2)	4	all_neural(166;0.187)	all_lung(203;1.06e-06)|Lung NSC(69;7.5e-06)|all_epithelial(167;0.000284)		Lung(183;0.0155)|LUSC - Lung squamous cell carcinoma(189;0.0856)		ATCCAAGGGGAGGAGATCAGT	0.547000													5	18					0	0	0.000602214	0	0
ASH1L	55870	broad.mit.edu	37	1	155450458	155450458	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A3CF-06A-11D-A196-08	TCGA-D3-A3CF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4de17e47-b1e8-458e-a8f1-be1e5d095f17	5f9d120e-e36f-45c2-8cbf-d11e68d80b2a	g.chr1:155450458C>G	uc009wqq.2	-	3	2683	c.2203G>C	c.(2203-2205)GAA>CAA	p.E735Q	ASH1L_uc001fkt.2_Missense_Mutation_p.E735Q|ASH1L_uc009wqr.1_Missense_Mutation_p.E735Q	NM_018489	NP_060959	Q9NR48	ASH1L_HUMAN	absent, small, or homeotic 1-like	735					cell-cell signaling|DNA packaging|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	chromosome|Golgi apparatus|nucleus|tight junction	DNA binding|histone-lysine N-methyltransferase activity|zinc ion binding			skin(5)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	11	Hepatocellular(266;0.0997)|all_neural(408;0.129)|all_hematologic(923;0.145)		Epithelial(20;1.74e-08)|all cancers(21;3.29e-08)|BRCA - Breast invasive adenocarcinoma(34;0.021)			CTTTCTAATTCTAGCCCTTTT	0.393000													7	36					0	0	0.00198382	0	0
ASPM	259266	broad.mit.edu	37	1	197091378	197091378	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A3CF-06A-11D-A196-08	TCGA-D3-A3CF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4de17e47-b1e8-458e-a8f1-be1e5d095f17	5f9d120e-e36f-45c2-8cbf-d11e68d80b2a	g.chr1:197091378G>C	uc001gtu.2	-	15	3909	c.3652C>G	c.(3652-3654)CAC>GAC	p.H1218D	ASPM_uc001gtv.2_Missense_Mutation_p.H1218D|ASPM_uc001gtw.3_Intron	NM_018136	NP_060606	Q8IZT6	ASPM_HUMAN	asp (abnormal spindle)-like, microcephaly	1218	CH 2.				mitosis	cytoplasm|nucleus	calmodulin binding			ovary(4)|central_nervous_system(2)	6						CTAACCAAGTGAAAATTTTTC	0.348000													3	25					0	0	6.4e-05	0	0
MAPKAPK2	9261	broad.mit.edu	37	1	206905225	206905225	+	Silent	SNP	G	T	T			TCGA-D3-A3CF-06A-11D-A196-08	TCGA-D3-A3CF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4de17e47-b1e8-458e-a8f1-be1e5d095f17	5f9d120e-e36f-45c2-8cbf-d11e68d80b2a	g.chr1:206905225G>T	uc001hem.1	+	9	1306	c.1020G>T	c.(1018-1020)CGG>CGT	p.R340R	MAPKAPK2_uc001hel.1_Silent_p.R340R	NM_032960	NP_116584	P49137	MAPK2_HUMAN	mitogen-activated protein kinase-activated	340					activation of MAPK activity|hormone biosynthetic process|innate immune response|leukotriene biosynthetic process|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|prostanoid metabolic process|Ras protein signal transduction|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|protein binding|protein serine/threonine kinase activity|signal transducer activity				0	Breast(84;0.183)		BRCA - Breast invasive adenocarcinoma(75;0.211)			ACACCAGCCGGGTCCTGAAGG	0.622000													12	53					2.27111e-07	1.58557e-06	0.00136819	1	0
PTPN14	5784	broad.mit.edu	37	1	214549710	214549710	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A3CF-06A-11D-A196-08	TCGA-D3-A3CF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4de17e47-b1e8-458e-a8f1-be1e5d095f17	5f9d120e-e36f-45c2-8cbf-d11e68d80b2a	g.chr1:214549710T>C	uc001hkk.1	-	15	3030	c.2759A>G	c.(2758-2760)AAG>AGG	p.K920R	PTPN14_uc010pty.1_Missense_Mutation_p.K821R	NM_005401	NP_005392	Q15678	PTN14_HUMAN	protein tyrosine phosphatase, non-receptor type	920	Tyrosine-protein phosphatase.				lymphangiogenesis	cytoplasm|cytoskeleton	protein tyrosine phosphatase activity|receptor tyrosine kinase binding			breast(2)|ovary(1)|kidney(1)|skin(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.00181)|all cancers(67;0.00194)|Epithelial(68;0.0157)|GBM - Glioblastoma multiforme(131;0.155)		GCCATTCGCCTTTTTCTTTGG	0.458000													3	70					0	0	0.000602214	0	0
CTNNA3	29119	broad.mit.edu	37	10	68940148	68940148	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CF-06A-11D-A196-08	TCGA-D3-A3CF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4de17e47-b1e8-458e-a8f1-be1e5d095f17	5f9d120e-e36f-45c2-8cbf-d11e68d80b2a	g.chr10:68940148C>T	uc009xpn.1	-	7	1097	c.974G>A	c.(973-975)CGA>CAA	p.R325Q	CTNNA3_uc001jmw.2_Missense_Mutation_p.R325Q|CTNNA3_uc001jmx.3_Missense_Mutation_p.R325Q|CTNNA3_uc009xpo.1_Missense_Mutation_p.R185Q|CTNNA3_uc001jna.2_Missense_Mutation_p.R337Q	NM_001127384	NP_001120856	Q9UI47	CTNA3_HUMAN	catenin, alpha 3	325	Potential.				cell-cell adhesion	actin cytoskeleton|cytoplasm|fascia adherens	cadherin binding|structural molecule activity			skin(3)|ovary(2)|pancreas(1)|lung(1)|central_nervous_system(1)	8						AATCCGCTCTCGGTGTAAGTC	0.512000													10	30					0	0	0.000673444	0	0
IFIT2	3433	broad.mit.edu	37	10	91066107	91066107	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A3CF-06A-11D-A196-08	TCGA-D3-A3CF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4de17e47-b1e8-458e-a8f1-be1e5d095f17	5f9d120e-e36f-45c2-8cbf-d11e68d80b2a	g.chr10:91066107A>G	uc009xts.2	+	2	569	c.394A>G	c.(394-396)AGA>GGA	p.R132G	LIPA_uc001kgb.3_Intron|LIPA_uc001kgc.3_Intron|uc001kgd.2_Intron	NM_001547	NP_001538	P09913	IFIT2_HUMAN	interferon-induced protein with	132					negative regulation of protein binding|response to virus|type I interferon-mediated signaling pathway		protein binding			ovary(1)|skin(1)	2		Colorectal(252;0.0161)				CAGTCCCTATAGAATTGAGAG	0.458000													8	33					0	0	0.000442599	0	0
KIAA1826	84437	broad.mit.edu	37	11	105880673	105880673	+	Silent	SNP	T	C	C			TCGA-D3-A3CF-06A-11D-A196-08	TCGA-D3-A3CF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4de17e47-b1e8-458e-a8f1-be1e5d095f17	5f9d120e-e36f-45c2-8cbf-d11e68d80b2a	g.chr11:105880673T>C	uc001piy.2	-	3	800	c.627A>G	c.(625-627)AAA>AAG	p.K209K	KIAA1826_uc001piz.2_Silent_p.K209K	NM_032424	NP_115800	Q8NCY6	K1826_HUMAN	hypothetical protein LOC84437	209	Potential.					nucleus				breast(1)	1		Melanoma(852;0.000878)|Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0017)|Breast(348;0.0321)		BRCA - Breast invasive adenocarcinoma(274;5.56e-05)|Epithelial(105;0.00432)|all cancers(92;0.0309)		CTAGTTTCTGTTTCTCAATAT	0.438000													13	44					0	0	0.00244969	0	0
PLEKHA5	54477	broad.mit.edu	37	12	19522626	19522626	+	Splice_Site	SNP	G	C	C			TCGA-D3-A3CF-06A-11D-A196-08	TCGA-D3-A3CF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4de17e47-b1e8-458e-a8f1-be1e5d095f17	5f9d120e-e36f-45c2-8cbf-d11e68d80b2a	g.chr12:19522626G>C	uc001reb.2	+	25	3343	c.3257_splice	c.e25-1	p.V1086_splice	PLEKHA5_uc001rea.2_Splice_Site_p.V1144_splice|PLEKHA5_uc009zin.2_Splice_Site_p.V844_splice|PLEKHA5_uc010sif.1_Splice_Site_p.V1075_splice|PLEKHA5_uc010sig.1_Splice_Site_p.V1068_splice|PLEKHA5_uc009zio.2_Splice_Site_p.V352_splice	NM_019012	NP_061885	Q9HAU0	PKHA5_HUMAN	pleckstrin homology domain containing, family A								1-phosphatidylinositol binding|protein binding			ovary(1)|kidney(1)|skin(1)	3	Acute lymphoblastic leukemia(4;0.000455)|all_hematologic(4;0.00804)					GTGTGTTTTAGTGAAAAGTCT	0.408000													7	19					0	0	0.00198382	0	0
NBEA	26960	broad.mit.edu	37	13	35619181	35619181	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A3CF-06A-11D-A196-08	TCGA-D3-A3CF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4de17e47-b1e8-458e-a8f1-be1e5d095f17	5f9d120e-e36f-45c2-8cbf-d11e68d80b2a	g.chr13:35619181C>G	uc001uvb.2	+	4	830	c.624C>G	c.(622-624)ATC>ATG	p.I208M		NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	208						cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		AAAGTGGAATCTGGGTAAGCT	0.398000													4	5					0	0	0.000602214	0	0
NDFIP2	54602	broad.mit.edu	37	13	80125161	80125161	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A3CF-06A-11D-A196-08	TCGA-D3-A3CF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4de17e47-b1e8-458e-a8f1-be1e5d095f17	5f9d120e-e36f-45c2-8cbf-d11e68d80b2a	g.chr13:80125161T>C	uc001vlf.2	+	7	997	c.917T>C	c.(916-918)CTT>CCT	p.L306P	NDFIP2_uc010tib.1_Missense_Mutation_p.L286P|NDFIP2_uc001vlg.2_RNA	NM_019080	NP_061953	Q9NV92	NFIP2_HUMAN	Nedd4 family interacting protein 2 isoform 1	306	Helical; (Potential).				negative regulation of gene expression|negative regulation of protein transport|negative regulation of transporter activity|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of protein ubiquitination	endoplasmic reticulum|Golgi membrane|integral to membrane|mitochondrion|multivesicular body membrane|perinuclear region of cytoplasm	signal transducer activity|WW domain binding			ovary(1)	1		Acute lymphoblastic leukemia(28;0.205)		GBM - Glioblastoma multiforme(99;0.0196)		GGCCTGCTCCTTTTCTTCAGA	0.323000													3	112					0	0	0.000602214	0	0
GOLGA6D	653643	broad.mit.edu	37	15	75580622	75580622	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CF-06A-11D-A196-08	TCGA-D3-A3CF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4de17e47-b1e8-458e-a8f1-be1e5d095f17	5f9d120e-e36f-45c2-8cbf-d11e68d80b2a	g.chr15:75580622C>T	uc010uma.1	+	7	516	c.481C>T	c.(481-483)CGC>TGC	p.R161C	uc010umb.1_5'Flank	NM_001145224	NP_001138696	P0CG33	GOG6D_HUMAN	golgi autoantigen, golgin subfamily a, 6D	161	Potential.										0						TCTGGCTGGCCGCCTGCAATA	0.527000													5	33					0	0	0.000157383	0	0
CYBA	1535	broad.mit.edu	37	16	88713222	88713222	+	Silent	SNP	C	A	A			TCGA-D3-A3CF-06A-11D-A196-08	TCGA-D3-A3CF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4de17e47-b1e8-458e-a8f1-be1e5d095f17	5f9d120e-e36f-45c2-8cbf-d11e68d80b2a	g.chr16:88713222C>A	uc002flb.2	-	4	264	c.228G>T	c.(226-228)GTG>GTT	p.V76V	CYBA_uc002flc.1_5'Flank|CYBA_uc002fld.1_Silent_p.V76V|CYBA_uc010chx.1_Silent_p.V76V	NM_000101	NP_000092	P13498	CY24A_HUMAN	cytochrome b, alpha polypeptide	76					cytochrome complex assembly|electron transport chain|hydrogen peroxide biosynthetic process|inflammatory response|innate immune response|respiratory burst|smooth muscle hypertrophy|superoxide anion generation|transport	NADPH oxidase complex|stored secretory granule	electron carrier activity|heme binding|protein heterodimerization activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(80;0.0478)		ACAGCTTCACCACGGCGGTCA	0.652000													10	26					6.40141e-05	0.000438788	0.000978159	1	0
KRTAP4-2	85291	broad.mit.edu	37	17	39334125	39334125	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A3CF-06A-11D-A196-08	TCGA-D3-A3CF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4de17e47-b1e8-458e-a8f1-be1e5d095f17	5f9d120e-e36f-45c2-8cbf-d11e68d80b2a	g.chr17:39334125G>C	uc002hwd.2	-	1	336	c.292C>G	c.(292-294)CCC>GCC	p.P98A		NM_033062	NP_149051	Q9BYR5	KRA42_HUMAN	keratin associated protein 4-2	98	20 X 5 AA repeats OF C-C-[GRQVS]-[SPT]- [VSTQ].|16.					keratin filament					0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000449)			CAGCAGGTGGGCTGGCAGTAC	0.667000													6	64					0	0	0.00116845	0	0
TOM1L1	10040	broad.mit.edu	37	17	52981124	52981124	+	Silent	SNP	C	T	T			TCGA-D3-A3CF-06A-11D-A196-08	TCGA-D3-A3CF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4de17e47-b1e8-458e-a8f1-be1e5d095f17	5f9d120e-e36f-45c2-8cbf-d11e68d80b2a	g.chr17:52981124C>T	uc002iud.2	+	2	289	c.114C>T	c.(112-114)ATC>ATT	p.I38I	TOM1L1_uc002iub.2_Silent_p.I3I|TOM1L1_uc002iuc.2_Silent_p.I38I|TOM1L1_uc010dca.1_Silent_p.I38I|TOM1L1_uc010wnb.1_Silent_p.I38I|TOM1L1_uc010wnc.1_Intron|TOM1L1_uc010dbz.2_Intron|TOM1L1_uc010wnd.1_5'UTR	NM_005486	NP_005477	O75674	TM1L1_HUMAN	target of myb1-like 1	38	VHS.				intracellular protein transport|ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway	cytosol|endosome membrane|Golgi stack|lysosome	SH3 domain binding|ubiquitin binding			ovary(1)	1						TCATGCACATCTGTGACATAA	0.428000													9	61					0	0	0.000442599	0	0
MUC16	94025	broad.mit.edu	37	19	9080450	9080450	+	Splice_Site	SNP	C	T	T			TCGA-D3-A3CF-06A-11D-A196-08	TCGA-D3-A3CF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4de17e47-b1e8-458e-a8f1-be1e5d095f17	5f9d120e-e36f-45c2-8cbf-d11e68d80b2a	g.chr19:9080450C>T	uc002mkp.2	-	2	9784	c.9580_splice	c.e2+1	p.G3194_splice		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16						cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TCTATATTTACCTGCTGGACT	0.393000													8	47					0	0	0.000442599	0	0
ILF3	3609	broad.mit.edu	37	19	10790580	10790580	+	Missense_Mutation	SNP	T	A	A			TCGA-D3-A3CF-06A-11D-A196-08	TCGA-D3-A3CF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4de17e47-b1e8-458e-a8f1-be1e5d095f17	5f9d120e-e36f-45c2-8cbf-d11e68d80b2a	g.chr19:10790580T>A	uc002mpn.2	+	8	1153	c.836T>A	c.(835-837)CTG>CAG	p.L279Q	ILF3_uc002mpm.2_Missense_Mutation_p.L279Q|ILF3_uc002mpl.2_Missense_Mutation_p.L279Q|ILF3_uc002mpk.2_Missense_Mutation_p.L279Q|ILF3_uc010xli.1_Intron|ILF3_uc002mpo.2_Missense_Mutation_p.L279Q|ILF3_uc002mpp.2_Missense_Mutation_p.L100Q	NM_012218	NP_036350	Q12906	ILF3_HUMAN	interleukin enhancer binding factor 3 isoform a	279	DZF.				M phase|negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrion|nucleolus|ribonucleoprotein complex	DNA binding|double-stranded RNA binding|protein binding|protein binding			ovary(3)	3			Epithelial(33;6.86e-06)|all cancers(31;1.65e-05)			CTGGAGTGCCTGGCGTCGGGC	0.632000													5	23					0	0	0.00116845	0	0
ZNF99	7652	broad.mit.edu	37	19	22940600	22940600	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A3CF-06A-11D-A196-08	TCGA-D3-A3CF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4de17e47-b1e8-458e-a8f1-be1e5d095f17	5f9d120e-e36f-45c2-8cbf-d11e68d80b2a	g.chr19:22940600G>T	uc010xrh.1	-	5	1838	c.1838C>A	c.(1837-1839)CCC>CAC	p.P613H		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				ACATTTGTAGGGTTTCTTTCC	0.373000													4	23					1.024e-07	7.28392e-07	0.000602214	1	0
ZNF99	7652	broad.mit.edu	37	19	22941562	22941562	+	Silent	SNP	G	A	A			TCGA-D3-A3CF-06A-11D-A196-08	TCGA-D3-A3CF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4de17e47-b1e8-458e-a8f1-be1e5d095f17	5f9d120e-e36f-45c2-8cbf-d11e68d80b2a	g.chr19:22941562G>A	uc010xrh.1	-	5	876	c.876C>T	c.(874-876)GCC>GCT	p.A292A		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				GTTTTCTAAGGGCTGACAAAT	0.368000													6	51					0	0	0.00198382	0	0
LGI4	163175	broad.mit.edu	37	19	35616221	35616221	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CF-06A-11D-A196-08	TCGA-D3-A3CF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4de17e47-b1e8-458e-a8f1-be1e5d095f17	5f9d120e-e36f-45c2-8cbf-d11e68d80b2a	g.chr19:35616221G>A	uc002nxx.2	-	9	2084	c.1490C>T	c.(1489-1491)CCG>CTG	p.P497L	LGI4_uc002nxy.1_Missense_Mutation_p.P325L|LGI4_uc002nxz.1_3'UTR	NM_139284	NP_644813	Q8N135	LGI4_HUMAN	leucine-rich repeat LGI family, member 4	497						extracellular region				pancreas(1)	1	all_lung(56;7.56e-09)|Lung NSC(56;1.1e-08)|Esophageal squamous(110;0.162)		Epithelial(14;5.54e-20)|OV - Ovarian serous cystadenocarcinoma(14;1.33e-18)|all cancers(14;4.27e-17)|LUSC - Lung squamous cell carcinoma(66;0.0849)			CACCAGGGCCGGAGGCCCCAG	0.642000													4	30					0	0	0.000602214	0	0
PXDN	7837	broad.mit.edu	37	2	1652989	1652989	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CF-06A-11D-A196-08	TCGA-D3-A3CF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4de17e47-b1e8-458e-a8f1-be1e5d095f17	5f9d120e-e36f-45c2-8cbf-d11e68d80b2a	g.chr2:1652989G>A	uc002qxa.2	-	17	2627	c.2563C>T	c.(2563-2565)CCC>TCC	p.P855S		NM_012293	NP_036425	Q92626	PXDN_HUMAN	peroxidasin precursor	855					extracellular matrix organization|hydrogen peroxide catabolic process|immune response	endoplasmic reticulum|extracellular space|proteinaceous extracellular matrix	extracellular matrix structural constituent|heme binding|interleukin-1 receptor antagonist activity|peroxidase activity			pancreas(6)|ovary(2)	8	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.0845)|Lung NSC(108;0.00641)|all_epithelial(98;0.00716)		all cancers(51;0.0492)|OV - Ovarian serous cystadenocarcinoma(76;0.0973)|Epithelial(75;0.17)|GBM - Glioblastoma multiforme(21;0.228)		AAGCAGGGGGGGTCGTTGCTG	0.677000													4	102					0	0	0.00024832	0	0
ID2	3398	broad.mit.edu	37	2	8822514	8822514	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A3CF-06A-11D-A196-08	TCGA-D3-A3CF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4de17e47-b1e8-458e-a8f1-be1e5d095f17	5f9d120e-e36f-45c2-8cbf-d11e68d80b2a	g.chr2:8822514G>C	uc010yiu.1	+	3	714	c.219G>C	c.(217-219)TTG>TTC	p.L73F	ID2_uc002qza.2_Missense_Mutation_p.L73F	NM_002166	NP_002157	Q02363	ID2_HUMAN	inhibitor of DNA binding 2	73	Helix-loop-helix motif.				cellular senescence|embryonic digestive tract morphogenesis|endodermal digestive tract morphogenesis|epithelial cell differentiation involved in mammary gland alveolus development|mammary gland epithelial cell proliferation|negative regulation of neural precursor cell proliferation|negative regulation of neuron differentiation|negative regulation of sequence-specific DNA binding transcription factor activity|neuron fate commitment|positive regulation of blood pressure|positive regulation of cell cycle arrest|positive regulation of smooth muscle cell proliferation|positive regulation of transcription, DNA-dependent	protein complex	protein binding				0	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)					ACTACATCTTGGACCTGCAGA	0.587000													22	138					0	0	0.00188189	0	0
ID2	3398	broad.mit.edu	37	2	8822644	8822644	+	Splice_Site	SNP	G	A	A			TCGA-D3-A3CF-06A-11D-A196-08	TCGA-D3-A3CF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4de17e47-b1e8-458e-a8f1-be1e5d095f17	5f9d120e-e36f-45c2-8cbf-d11e68d80b2a	g.chr2:8822644G>A	uc010yiu.1	+	3	843	c.348_splice	c.e3+1	p.Q116_splice	ID2_uc002qza.2_Splice_Site_p.Q116_splice	NM_002166	NP_002157	Q02363	ID2_HUMAN	inhibitor of DNA binding 2						cellular senescence|embryonic digestive tract morphogenesis|endodermal digestive tract morphogenesis|epithelial cell differentiation involved in mammary gland alveolus development|mammary gland epithelial cell proliferation|negative regulation of neural precursor cell proliferation|negative regulation of neuron differentiation|negative regulation of sequence-specific DNA binding transcription factor activity|neuron fate commitment|positive regulation of blood pressure|positive regulation of cell cycle arrest|positive regulation of smooth muscle cell proliferation|positive regulation of transcription, DNA-dependent	protein complex	protein binding				0	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)					GTCCTTGCAGGTAAGACCTGC	0.632000													20	83					0	0	0.00121646	0	0
FOXD4L1	200350	broad.mit.edu	37	2	114257473	114257473	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A3CF-06A-11D-A196-08	TCGA-D3-A3CF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4de17e47-b1e8-458e-a8f1-be1e5d095f17	5f9d120e-e36f-45c2-8cbf-d11e68d80b2a	g.chr2:114257473C>G	uc002tjw.3	+	1	813	c.640C>G	c.(640-642)CTG>GTG	p.L214V		NM_012184	NP_036316	Q9NU39	FX4L1_HUMAN	forkhead box D4-like 1	214	Pro-rich.				axon extension involved in axon guidance|cartilage development|dichotomous subdivision of terminal units involved in ureteric bud branching|embryo development|enteric nervous system development|iridophore differentiation|lateral line nerve glial cell development|melanocyte differentiation|neural crest cell migration|pattern specification process|peripheral nervous system development|positive regulation of BMP signaling pathway|positive regulation of kidney development|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity|sympathetic nervous system development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding				0						GGGAGCCCACCTGCCCCACCC	0.697000													17	32					0	0	0.00047179	0	0
FRG1B	284802	broad.mit.edu	37	20	29628233	29628233	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A3CF-06A-11D-A196-08	TCGA-D3-A3CF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4de17e47-b1e8-458e-a8f1-be1e5d095f17	5f9d120e-e36f-45c2-8cbf-d11e68d80b2a	g.chr20:29628233A>G	uc010ztl.1	+	3	177	c.145A>G	c.(145-147)ATG>GTG	p.M49V	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Missense_Mutation_p.M1V					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						TTAGGGGAAAATGGCTTTGTT	0.333000													3	42					0	0	0.00116845	0	0
TPTE	7179	broad.mit.edu	37	21	10906929	10906929	+	Missense_Mutation	SNP	A	C	C			TCGA-D3-A3CF-06A-11D-A196-08	TCGA-D3-A3CF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4de17e47-b1e8-458e-a8f1-be1e5d095f17	5f9d120e-e36f-45c2-8cbf-d11e68d80b2a	g.chr21:10906929A>C	uc002yip.1	-	24	2000	c.1632T>G	c.(1630-1632)AGT>AGG	p.S544R	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Missense_Mutation_p.S526R|TPTE_uc002yir.1_Missense_Mutation_p.S506R|TPTE_uc010gkv.1_Missense_Mutation_p.S406R	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	544					signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		CTACAACATCACTGGAAGTCA	0.388000													3	62					0	0	0.00024832	0	0
ALS2CL	259173	broad.mit.edu	37	3	46722884	46722884	+	Nonsense_Mutation	SNP	C	A	A			TCGA-D3-A3CF-06A-11D-A196-08	TCGA-D3-A3CF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4de17e47-b1e8-458e-a8f1-be1e5d095f17	5f9d120e-e36f-45c2-8cbf-d11e68d80b2a	g.chr3:46722884C>A	uc003cqa.1	-	13	1478	c.1288G>T	c.(1288-1290)GAG>TAG	p.E430*	ALS2CL_uc003cpz.1_5'UTR|ALS2CL_uc003cqb.1_Nonsense_Mutation_p.E430*|ALS2CL_uc003cqc.1_RNA	NM_147129	NP_667340	Q60I27	AL2CL_HUMAN	ALS2 C-terminal like isoform 1	430	MORN 3.			E -> G (in Ref. 2; BAD18448).	endosome organization|regulation of Rho protein signal transduction		GTPase activator activity|identical protein binding|Rho guanyl-nucleotide exchange factor activity			breast(2)|central_nervous_system(2)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(193;0.000726)|KIRC - Kidney renal clear cell carcinoma(197;0.0171)|Kidney(197;0.0202)		TTGTACACCTCGTCGGTGCTG	0.652000													5	61					0.00116845	0.0075949	0.00116845	1	0
LAMB2	3913	broad.mit.edu	37	3	49165975	49165975	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CF-06A-11D-A196-08	TCGA-D3-A3CF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4de17e47-b1e8-458e-a8f1-be1e5d095f17	5f9d120e-e36f-45c2-8cbf-d11e68d80b2a	g.chr3:49165975G>A	uc003cwe.2	-	15	2233	c.1934C>T	c.(1933-1935)CCA>CTA	p.P645L	LAMB2_uc003cwf.1_Missense_Mutation_p.P645L	NM_002292	NP_002283	P55268	LAMB2_HUMAN	laminin, beta 2 precursor	645	Laminin IV type B.				cell adhesion	laminin-11 complex|laminin-3 complex	structural molecule activity			ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00219)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		CACAGGCCCTGGACGCTGCAC	0.597000													9	35					0	0	0.000442599	0	0
EGF	1950	broad.mit.edu	37	4	110882136	110882136	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A3CF-06A-11D-A196-08	TCGA-D3-A3CF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4de17e47-b1e8-458e-a8f1-be1e5d095f17	5f9d120e-e36f-45c2-8cbf-d11e68d80b2a	g.chr4:110882136C>T	uc003hzy.3	+	7	1632	c.1180C>T	c.(1180-1182)CGA>TGA	p.R394*	EGF_uc011cfu.1_Nonsense_Mutation_p.R352*|EGF_uc011cfv.1_Nonsense_Mutation_p.R394*	NM_001963	NP_001954	P01133	EGF_HUMAN	epidermal growth factor precursor	394	EGF-like 2; calcium-binding (Potential).|Extracellular (Potential).				angiogenesis|DNA replication|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of secretion|platelet activation|platelet degranulation|positive regulation of catenin import into nucleus|positive regulation of epidermal growth factor receptor activity|positive regulation of MAP kinase activity|positive regulation of mitosis|regulation of calcium ion import|regulation of protein localization at cell surface	integral to membrane|plasma membrane|platelet alpha granule lumen	calcium ion binding|epidermal growth factor receptor binding|growth factor activity|transmembrane receptor protein tyrosine kinase activator activity			ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	4		Hepatocellular(203;0.0893)		OV - Ovarian serous cystadenocarcinoma(123;9.87e-06)	Sulindac(DB00605)	TGATGGGAAACGATGTCATCG	0.398000													9	34					0	0	0.000274275	0	0
DNAH5	1767	broad.mit.edu	37	5	13737373	13737373	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CF-06A-11D-A196-08	TCGA-D3-A3CF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4de17e47-b1e8-458e-a8f1-be1e5d095f17	5f9d120e-e36f-45c2-8cbf-d11e68d80b2a	g.chr5:13737373C>T	uc003jfd.2	-	66	11485	c.11443G>A	c.(11443-11445)GAA>AAA	p.E3815K	DNAH5_uc003jfc.2_Intron	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3815	Potential.				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GGTCTGTATTCCTCCCGGGCT	0.428000									Kartagener_syndrome				15	106					0	0	0.000422831	0	0
DNAH5	1767	broad.mit.edu	37	5	13737425	13737425	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A3CF-06A-11D-A196-08	TCGA-D3-A3CF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4de17e47-b1e8-458e-a8f1-be1e5d095f17	5f9d120e-e36f-45c2-8cbf-d11e68d80b2a	g.chr5:13737425C>A	uc003jfd.2	-	66	11433	c.11391G>T	c.(11389-11391)CAG>CAT	p.Q3797H	DNAH5_uc003jfc.2_Intron	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3797	Potential.|AAA 5 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TTTCTAGCTTCTGTGTCACCT	0.463000									Kartagener_syndrome				15	108					2.32078e-09	1.68257e-08	0.000308642	1	0
MEGF10	84466	broad.mit.edu	37	5	126738307	126738307	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A3CF-06A-11D-A196-08	TCGA-D3-A3CF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4de17e47-b1e8-458e-a8f1-be1e5d095f17	5f9d120e-e36f-45c2-8cbf-d11e68d80b2a	g.chr5:126738307C>A	uc003kuh.3	+	9	1212	c.850C>A	c.(850-852)CAT>AAT	p.H284N	MEGF10_uc010jdc.1_Missense_Mutation_p.H284N|MEGF10_uc010jdd.1_Missense_Mutation_p.H284N|MEGF10_uc003kui.3_Missense_Mutation_p.H284N	NM_032446	NP_115822	Q96KG7	MEG10_HUMAN	multiple EGF-like-domains 10 precursor	284	Extracellular (Potential).|Necessary for interaction with AP2M1, self-assembly and formation of the irregular, mosaic-like adhesion pattern.|EGF-like 5.				cell adhesion|phagocytosis	basolateral plasma membrane|cell projection|integral to membrane|phagocytic cup				ovary(4)	4		Prostate(80;0.165)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0657)|Epithelial(69;0.123)		ATGCCAGTGCCATAATGGAGG	0.507000													23	74					5.45024e-15	4.0289e-14	0.00047179	1	0
PCDHA5	56143	broad.mit.edu	37	5	140203711	140203711	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A3CF-06A-11D-A196-08	TCGA-D3-A3CF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4de17e47-b1e8-458e-a8f1-be1e5d095f17	5f9d120e-e36f-45c2-8cbf-d11e68d80b2a	g.chr5:140203711A>G	uc003lhl.2	+	1	2351	c.2351A>G	c.(2350-2352)AAC>AGC	p.N784S	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Missense_Mutation_p.N784S|PCDHA5_uc003lhj.1_Missense_Mutation_p.N784S	NM_018908	NP_061731	Q9Y5H7	PCDA5_HUMAN	protocadherin alpha 5 isoform 1 precursor	784	Cytoplasmic (Potential).|5 X 4 AA repeats of P-X-X-P.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(1)|breast(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCTACAGACAACGTGAGTTTT	0.428000													7	85					0	0	0.00198382	0	0
NSD1	64324	broad.mit.edu	37	5	176721888	176721888	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CF-06A-11D-A196-08	TCGA-D3-A3CF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4de17e47-b1e8-458e-a8f1-be1e5d095f17	5f9d120e-e36f-45c2-8cbf-d11e68d80b2a	g.chr5:176721888G>A	uc003mfr.3	+	23	7657	c.7519G>A	c.(7519-7521)GGC>AGC	p.G2507S	NSD1_uc003mft.3_Missense_Mutation_p.G2238S|NSD1_uc011dfx.1_Missense_Mutation_p.G2155S	NM_022455	NP_071900	Q96L73	NSD1_HUMAN	nuclear receptor binding SET domain protein 1	2507					negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleus	androgen receptor binding|chromatin binding|estrogen receptor binding|histone methyltransferase activity (H3-K36 specific)|histone methyltransferase activity (H4-K20 specific)|ligand-dependent nuclear receptor binding|retinoid X receptor binding|thyroid hormone receptor binding|transcription corepressor activity|zinc ion binding			ovary(2)|kidney(1)	3	all_cancers(89;1.57e-05)|Renal(175;0.000269)|Lung NSC(126;0.00111)|all_lung(126;0.002)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)|Epithelial(233;0.198)	Kidney(146;0.235)		TGTTGAGAAAGGCTGTGTGTC	0.537000			T	NUP98	AML		Sotos Syndrome		Beckwith-Wiedemann_syndrome|Sotos_syndrome|Weaver_syndrome	HNSCC(47;0.14)			16	108					0	0	0.000958276	0	0
GFPT2	9945	broad.mit.edu	37	5	179731790	179731790	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A3CF-06A-11D-A196-08	TCGA-D3-A3CF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4de17e47-b1e8-458e-a8f1-be1e5d095f17	5f9d120e-e36f-45c2-8cbf-d11e68d80b2a	g.chr5:179731790C>A	uc003mlw.1	-	17	1922	c.1824G>T	c.(1822-1824)CAG>CAT	p.Q608H		NM_005110	NP_005101	O94808	GFPT2_HUMAN	glutamine-fructose-6-phosphate transaminase 2	608	SIS 2.				dolichol-linked oligosaccharide biosynthetic process|energy reserve metabolic process|fructose 6-phosphate metabolic process|glutamine metabolic process|post-translational protein modification|protein N-linked glycosylation via asparagine|UDP-N-acetylglucosamine biosynthetic process	cytosol	glutamine-fructose-6-phosphate transaminase (isomerizing) activity|sugar binding			ovary(1)|skin(1)	2	all_cancers(89;4.97e-05)|all_epithelial(37;1.22e-05)|Renal(175;0.000269)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.137)	Medulloblastoma(196;0.0392)|all_neural(177;0.0529)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)		L-Glutamine(DB00130)	CCGTGACTTGCTGCAGGGCGT	0.592000													12	186					0.00010058	0.000677118	0.00136819	1	0
SKIV2L	6499	broad.mit.edu	37	6	31928448	31928448	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A3CF-06A-11D-A196-08	TCGA-D3-A3CF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4de17e47-b1e8-458e-a8f1-be1e5d095f17	5f9d120e-e36f-45c2-8cbf-d11e68d80b2a	g.chr6:31928448A>G	uc003nyn.1	+	6	864	c.475A>G	c.(475-477)ATG>GTG	p.M159V	RDBP_uc003nyk.2_5'Flank|RDBP_uc011dot.1_5'Flank|RDBP_uc003nyl.1_5'Flank|RDBP_uc003nym.1_5'Flank|SKIV2L_uc011dou.1_Missense_Mutation_p.M1V|SKIV2L_uc011dov.1_Intron	NM_006929	NP_008860	Q15477	SKIV2_HUMAN	superkiller viralicidic activity 2-like homolog	159						nucleus	ATP binding|ATP-dependent RNA helicase activity|protein binding|RNA binding			ovary(1)|large_intestine(1)|breast(1)|central_nervous_system(1)	4						CCCAGGGGGGATGGATGAACC	0.522000													4	334					0	0	0.00024832	0	0
ANKMY2	57037	broad.mit.edu	37	7	16650312	16650312	+	Missense_Mutation	SNP	A	C	C			TCGA-D3-A3CF-06A-11D-A196-08	TCGA-D3-A3CF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4de17e47-b1e8-458e-a8f1-be1e5d095f17	5f9d120e-e36f-45c2-8cbf-d11e68d80b2a	g.chr7:16650312A>C	uc003sti.2	-	6	808	c.608T>G	c.(607-609)TTG>TGG	p.L203W	ANKMY2_uc010ktz.2_RNA	NM_020319	NP_064715	Q8IV38	ANKY2_HUMAN	ankyrin repeat and MYND domain containing 2	203						cilium	zinc ion binding			central_nervous_system(1)	1	Lung NSC(10;0.103)|all_lung(11;0.204)			UCEC - Uterine corpus endometrioid carcinoma (126;0.195)		CTCACAAATCAAATCCATCAC	0.373000													11	46					0	0	0.00185496	0	0
GPR20	2843	broad.mit.edu	37	8	142367126	142367126	+	Missense_Mutation	SNP	C	T	T	rs150478338		TCGA-D3-A3CF-06A-11D-A196-08	TCGA-D3-A3CF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4de17e47-b1e8-458e-a8f1-be1e5d095f17	5f9d120e-e36f-45c2-8cbf-d11e68d80b2a	g.chr8:142367126C>T	uc003ywf.2	-	2	987	c.898G>A	c.(898-900)GTC>ATC	p.V300I		NM_005293	NP_005284	Q99678	GPR20_HUMAN	G protein-coupled receptor 20	300	Cytoplasmic (Potential).					integral to plasma membrane	G-protein coupled receptor activity			upper_aerodigestive_tract(1)	1	all_cancers(97;4.32e-16)|all_epithelial(106;6.61e-14)|Lung NSC(106;9.4e-06)|all_lung(105;1.35e-05)|Ovarian(258;0.0303)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0415)			CCACTGGTGACGAAGCAGTAG	0.647000													7	50					0	0	0.000157383	0	0
BRD3	8019	broad.mit.edu	37	9	136918456	136918456	+	Silent	SNP	C	T	T			TCGA-D3-A3CF-06A-11D-A196-08	TCGA-D3-A3CF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4de17e47-b1e8-458e-a8f1-be1e5d095f17	5f9d120e-e36f-45c2-8cbf-d11e68d80b2a	g.chr9:136918456C>T	uc004cew.2	-	2	332	c.144G>A	c.(142-144)AAG>AAA	p.K48K	BRD3_uc004cex.2_Silent_p.K48K	NM_007371	NP_031397	Q15059	BRD3_HUMAN	bromodomain containing protein 3	48						nucleus	protein binding		BRD3/C15orf55(3)	stomach(4)|midline_organs(3)|kidney(1)	8				OV - Ovarian serous cystadenocarcinoma(145;1.43e-08)|Epithelial(140;8.41e-08)|all cancers(34;5.21e-07)		TCCAGAGCGTCTTCACCACCA	0.637000			T	NUT|C15orf55	lethal midline carcinoma of young people								8	53					0	0	0.000274275	0	0
Unknown	0	broad.mit.edu	37	X	51150037	51150037	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A3CF-06A-11D-A196-08	TCGA-D3-A3CF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4de17e47-b1e8-458e-a8f1-be1e5d095f17	5f9d120e-e36f-45c2-8cbf-d11e68d80b2a	g.chrX:51150037G>A	uc004dpj.2	+	1	271	c.169G>A	c.(169-171)GGC>AGC	p.G57S		NM_203407	NP_981952			hypothetical protein LOC340602																		TCCCTCGGGCGGCGCCGCCCT	0.652000													3	10					0	0	0.00024832	0	0
CT47B1	643311	broad.mit.edu	37	X	120007818	120007818	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A3CF-06A-11D-A196-08	TCGA-D3-A3CF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4de17e47-b1e8-458e-a8f1-be1e5d095f17	5f9d120e-e36f-45c2-8cbf-d11e68d80b2a	g.chrX:120007818C>T	uc011muc.1	-	2	1087	c.832G>A	c.(832-834)GAG>AAG	p.E278K		NM_001145718	NP_001139190	P0C2W7	CT47B_HUMAN	cancer/testis antigen family 147, member B1	278	Potential.										0						TTCTCTTCCTCGCCTGCAGCA	0.468000													89	337					0	0	0.000781405	0	0
CLOCK	9575	broad.mit.edu	37	4	56336954	56336954	+	Frame_Shift_Del	DEL	A	-	-			TCGA-D3-A3CF-06A-11D-A196-08	TCGA-D3-A3CF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4de17e47-b1e8-458e-a8f1-be1e5d095f17	5f9d120e-e36f-45c2-8cbf-d11e68d80b2a	g.chr4:56336954delA	uc003haz.1	-	9	1294	c.368delT	c.(367-369)TTAfs	p.L123fs	CLOCK_uc003hba.1_Frame_Shift_Del_p.L123fs	NM_004898	NP_004889	O15516	CLOCK_HUMAN	clock	123	PAS 1.				circadian rhythm|photoperiodism|positive regulation of transcription from RNA polymerase II promoter	cytoplasm|transcription factor complex	DNA binding|histone acetyltransferase activity|sequence-specific DNA binding transcription factor activity|signal transducer activity			central_nervous_system(2)|ovary(1)	3	Lung NSC(11;0.00335)|Glioma(25;0.08)|all_epithelial(27;0.0992)|all_neural(26;0.101)		LUSC - Lung squamous cell carcinoma(4;1.62e-07)|Lung(4;1.34e-06)|Epithelial(7;0.0107)			CATGATTGCTAAAAAAAAACC	0.289													8	88	---	---	---	---					
NUDT11	55190	broad.mit.edu	37	X	51239296	51239309	+	Translation_Start_Site	DEL	TCCTCGAGGCAGCC	-	-			TCGA-D3-A3CF-06A-11D-A196-08	TCGA-D3-A3CF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	4de17e47-b1e8-458e-a8f1-be1e5d095f17	5f9d120e-e36f-45c2-8cbf-d11e68d80b2a	g.chrX:51239296_51239309delTCCTCGAGGCAGCC	uc010njt.2	-	1						NM_018159	NP_060629	Q96G61	NUD11_HUMAN	nudix-type motif 11							cytoplasm	diphosphoinositol-polyphosphate diphosphatase activity|metal ion binding				0	Ovarian(276;0.236)					TTGCACTTCATCCTCGAGGCAGCCTCCTCGAGGC	0.584										HNSCC(48;0.14)			4	9	---	---	---	---					
